Query 006071
Match_columns 662
No_of_seqs 706 out of 3560
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 15:10:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.1E-39 3.9E-44 343.3 43.7 487 124-632 82-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9.2E-40 3.2E-44 344.1 42.8 501 68-595 65-593 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.8E-28 2.7E-32 238.2 46.4 382 26-427 5-386 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-27 8.2E-32 234.7 47.4 378 101-498 9-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 6.1E-29 2.1E-33 248.7 25.2 204 75-278 9-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.7E-28 9.1E-33 244.0 25.3 205 109-314 8-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 5.2E-24 1.8E-28 219.6 42.3 455 56-555 6-483 (514)
8 2gw1_A Mitochondrial precursor 99.9 9.4E-24 3.2E-28 217.7 39.8 448 24-516 10-481 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 3.6E-22 1.2E-26 202.0 41.9 301 230-547 25-357 (450)
10 3fp2_A TPR repeat-containing p 99.9 3.2E-22 1.1E-26 207.5 41.2 253 280-547 216-490 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 4.2E-22 1.4E-26 201.5 39.9 318 37-365 9-357 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.8E-22 6E-27 209.4 37.9 403 24-444 29-492 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 2.1E-17 7.2E-22 174.9 60.6 378 24-469 989-1375(1630)
14 3ieg_A DNAJ homolog subfamily 99.9 7E-19 2.4E-23 172.0 39.5 313 24-347 7-350 (359)
15 2ooe_A Cleavage stimulation fa 99.9 5.2E-18 1.8E-22 174.5 47.8 434 149-615 2-492 (530)
16 3ieg_A DNAJ homolog subfamily 99.9 4.3E-19 1.5E-23 173.4 37.6 334 90-458 2-349 (359)
17 1xi4_A Clathrin heavy chain; a 99.9 2.3E-16 7.9E-21 167.1 56.7 519 9-607 1039-1584(1630)
18 2ooe_A Cleavage stimulation fa 99.9 7.9E-18 2.7E-22 173.2 44.5 217 284-513 256-492 (530)
19 2xm6_A Protein corresponding t 99.9 3.3E-17 1.1E-21 166.8 47.4 352 195-581 38-433 (490)
20 2xm6_A Protein corresponding t 99.9 1.8E-16 6E-21 161.4 50.8 220 125-363 38-285 (490)
21 3hym_B Cell division cycle pro 99.9 1.4E-18 4.6E-23 167.7 33.5 299 160-465 21-321 (330)
22 3hym_B Cell division cycle pro 99.9 1.1E-18 3.9E-23 168.2 32.7 291 334-638 19-322 (330)
23 1fch_A Peroxisomal targeting s 99.8 1.9E-18 6.5E-23 169.5 27.1 289 347-645 35-354 (368)
24 1fch_A Peroxisomal targeting s 99.8 4E-18 1.4E-22 167.1 25.4 267 93-365 66-358 (368)
25 4g1t_A Interferon-induced prot 99.8 2.7E-16 9.4E-21 159.8 35.6 385 195-617 50-461 (472)
26 1b89_A Protein (clathrin heavy 99.8 3E-17 1E-21 155.8 26.0 289 28-362 11-307 (449)
27 4eqf_A PEX5-related protein; a 99.8 2E-17 6.9E-22 161.8 25.7 262 379-646 64-352 (365)
28 4eqf_A PEX5-related protein; a 99.8 1.7E-17 5.6E-22 162.4 22.8 235 230-476 64-308 (365)
29 4g1t_A Interferon-induced prot 99.8 1.6E-15 5.5E-20 154.1 38.3 345 302-650 51-459 (472)
30 1b89_A Protein (clathrin heavy 99.8 3.7E-17 1.3E-21 155.2 23.8 288 67-401 14-303 (449)
31 3cv0_A Peroxisome targeting si 99.8 1.1E-16 3.6E-21 154.1 26.9 261 379-646 20-311 (327)
32 3cv0_A Peroxisome targeting si 99.8 1.8E-16 6.3E-21 152.5 26.8 278 232-545 22-312 (327)
33 3mkr_A Coatomer subunit epsilo 99.8 3.6E-16 1.2E-20 146.1 27.5 249 207-478 10-264 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 2.1E-16 7.2E-21 147.6 25.9 274 276-574 9-288 (291)
35 3e4b_A ALGK; tetratricopeptide 99.7 2.8E-15 9.5E-20 149.8 23.1 378 202-614 9-420 (452)
36 4e6h_A MRNA 3'-END-processing 99.7 2.4E-12 8.1E-17 132.6 44.1 451 141-618 47-573 (679)
37 3e4b_A ALGK; tetratricopeptide 99.7 1.1E-14 3.7E-19 145.6 26.0 308 24-363 7-348 (452)
38 2pl2_A Hypothetical conserved 99.7 6.1E-15 2.1E-19 131.5 21.1 189 382-576 7-210 (217)
39 3spa_A Mtrpol, DNA-directed RN 99.7 1.5E-16 5.3E-21 163.2 10.1 119 125-243 126-248 (1134)
40 3uq3_A Heat shock protein STI1 99.7 3E-14 1E-18 131.6 24.3 226 56-295 5-236 (258)
41 3spa_A Mtrpol, DNA-directed RN 99.7 2.4E-16 8.2E-21 161.8 10.5 150 91-245 127-286 (1134)
42 2pl2_A Hypothetical conserved 99.6 2E-14 6.7E-19 128.3 21.4 198 53-256 2-210 (217)
43 2h6f_A Protein farnesyltransfe 99.6 4.3E-14 1.5E-18 136.4 25.3 246 381-633 98-365 (382)
44 3u4t_A TPR repeat-containing p 99.6 4.8E-14 1.7E-18 131.4 25.0 246 381-631 4-265 (272)
45 1ouv_A Conserved hypothetical 99.6 1.8E-13 6E-18 127.5 28.7 224 380-617 6-253 (273)
46 4e6h_A MRNA 3'-END-processing 99.6 9.6E-12 3.3E-16 128.1 42.7 452 36-516 48-573 (679)
47 3uq3_A Heat shock protein STI1 99.6 7.9E-14 2.7E-18 128.7 25.0 222 269-512 8-235 (258)
48 2h6f_A Protein farnesyltransfe 99.6 1.6E-13 5.6E-18 132.3 27.0 225 25-257 102-344 (382)
49 3u4t_A TPR repeat-containing p 99.6 1.4E-13 4.9E-18 128.1 25.5 163 383-547 77-249 (272)
50 1ouv_A Conserved hypothetical 99.6 6E-13 2E-17 123.9 29.6 228 411-653 3-254 (273)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-13 3.7E-18 129.2 21.4 244 392-643 17-268 (275)
52 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.7E-14 1.6E-18 131.7 18.3 219 382-609 45-269 (275)
53 2ho1_A Type 4 fimbrial biogene 99.6 3.2E-12 1.1E-16 117.4 28.1 198 93-294 39-237 (252)
54 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-12 4.6E-17 119.9 25.5 201 56-260 37-238 (252)
55 3sf4_A G-protein-signaling mod 99.6 1.6E-13 5.6E-18 136.2 20.6 302 301-640 8-366 (406)
56 2vq2_A PILW, putative fimbrial 99.6 2.7E-12 9.3E-17 115.5 26.0 200 267-476 9-209 (225)
57 2vq2_A PILW, putative fimbrial 99.6 3.1E-12 1.1E-16 115.1 26.4 22 167-188 14-35 (225)
58 2q7f_A YRRB protein; TPR, prot 99.6 3.3E-13 1.1E-17 123.2 20.1 190 29-224 32-221 (243)
59 4a1s_A PINS, partner of inscut 99.5 1.1E-13 3.7E-18 137.8 17.8 271 382-652 50-374 (411)
60 2q7f_A YRRB protein; TPR, prot 99.5 6.2E-13 2.1E-17 121.4 20.9 126 234-363 26-151 (243)
61 4a1s_A PINS, partner of inscut 99.5 4.5E-13 1.5E-17 133.2 19.6 272 339-617 50-374 (411)
62 3sf4_A G-protein-signaling mod 99.5 4E-13 1.4E-17 133.4 19.1 282 195-511 8-334 (406)
63 2ond_A Cleavage stimulation fa 99.5 1.4E-11 4.7E-16 116.6 27.6 217 37-260 33-270 (308)
64 2ond_A Cleavage stimulation fa 99.5 1.9E-11 6.4E-16 115.7 28.4 216 397-617 33-272 (308)
65 3ro2_A PINS homolog, G-protein 99.5 5.1E-13 1.7E-17 128.8 17.4 269 383-651 8-333 (338)
66 4abn_A Tetratricopeptide repea 99.5 1.2E-12 4.1E-17 131.6 20.0 210 395-611 83-317 (474)
67 3vtx_A MAMA; tetratricopeptide 99.5 5.7E-12 2E-16 109.2 21.6 165 380-547 5-169 (184)
68 3ro2_A PINS homolog, G-protein 99.5 1.8E-12 6.3E-17 124.9 19.4 270 272-546 11-330 (338)
69 3ulq_A Response regulator aspa 99.5 8.3E-12 2.8E-16 122.6 22.8 233 308-547 109-367 (383)
70 3vtx_A MAMA; tetratricopeptide 99.4 1.3E-11 4.3E-16 107.0 20.9 163 448-615 4-170 (184)
71 3ulq_A Response regulator aspa 99.4 1.1E-11 3.7E-16 121.8 22.4 235 272-513 109-368 (383)
72 3nf1_A KLC 1, kinesin light ch 99.4 2.4E-12 8.3E-17 122.5 17.0 236 379-615 26-307 (311)
73 4abn_A Tetratricopeptide repea 99.4 6.4E-12 2.2E-16 126.3 19.4 214 72-292 84-318 (474)
74 3nf1_A KLC 1, kinesin light ch 99.4 4.3E-12 1.5E-16 120.7 14.9 99 268-366 113-224 (311)
75 3q15_A PSP28, response regulat 99.4 1.6E-10 5.5E-15 113.0 25.6 227 386-615 107-365 (378)
76 3q15_A PSP28, response regulat 99.3 2.2E-10 7.6E-15 112.0 24.8 166 273-442 108-289 (378)
77 1hz4_A MALT regulatory protein 99.3 5.2E-10 1.8E-14 109.3 26.7 229 386-614 59-321 (373)
78 1hz4_A MALT regulatory protein 99.3 7.3E-10 2.5E-14 108.3 27.4 238 271-512 58-321 (373)
79 4i17_A Hypothetical protein; T 99.3 3.1E-10 1.1E-14 102.1 21.6 195 411-617 4-211 (228)
80 3as5_A MAMA; tetratricopeptide 99.3 2.9E-10 9.9E-15 98.5 19.6 163 382-547 10-172 (186)
81 3as5_A MAMA; tetratricopeptide 99.3 7.3E-10 2.5E-14 95.9 22.0 165 56-224 8-172 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.3 1.5E-10 5.3E-15 120.9 20.2 166 379-547 8-173 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.3 1.8E-10 6.1E-15 120.4 20.0 164 266-441 9-172 (723)
84 3edt_B KLC 2, kinesin light ch 99.3 6.3E-11 2.1E-15 110.8 14.5 223 392-615 13-281 (283)
85 4i17_A Hypothetical protein; T 99.2 1.7E-09 5.8E-14 97.2 22.0 203 90-306 6-218 (228)
86 3edt_B KLC 2, kinesin light ch 99.2 4E-10 1.4E-14 105.3 16.4 134 233-366 45-198 (283)
87 3qky_A Outer membrane assembly 99.2 1.4E-09 4.9E-14 100.0 19.4 213 411-640 12-251 (261)
88 1qqe_A Vesicular transport pro 99.2 7.2E-10 2.5E-14 103.7 16.9 193 421-613 44-267 (292)
89 3mv2_B Coatomer subunit epsilo 99.2 9.5E-09 3.3E-13 93.6 23.4 242 66-331 23-282 (310)
90 2uy1_A Cleavage stimulation fa 99.2 2.3E-08 7.9E-13 100.2 28.0 376 173-614 6-412 (493)
91 3mv2_B Coatomer subunit epsilo 99.2 1.4E-08 4.8E-13 92.5 23.9 173 381-561 101-293 (310)
92 3dra_A Protein farnesyltransfe 99.1 3.3E-08 1.1E-12 91.2 26.2 230 392-626 45-298 (306)
93 2uy1_A Cleavage stimulation fa 99.1 9E-08 3.1E-12 95.9 31.5 370 105-547 28-412 (493)
94 2yhc_A BAMD, UPF0169 lipoprote 99.1 8.7E-09 3E-13 92.1 20.8 193 448-656 3-219 (225)
95 1qqe_A Vesicular transport pro 99.1 1.2E-09 4E-14 102.3 15.4 164 415-580 78-269 (292)
96 2r5s_A Uncharacterized protein 99.1 3.9E-09 1.3E-13 90.2 16.5 163 22-189 8-172 (176)
97 3qky_A Outer membrane assembly 99.1 5.3E-09 1.8E-13 96.2 18.3 206 379-604 14-250 (261)
98 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.1E-08 3.9E-13 91.4 19.8 187 413-617 3-215 (225)
99 3dra_A Protein farnesyltransfe 99.1 1.1E-07 3.9E-12 87.6 26.3 223 31-259 44-286 (306)
100 3urz_A Uncharacterized protein 99.1 4.6E-09 1.6E-13 92.5 16.2 158 27-190 11-186 (208)
101 4ga2_A E3 SUMO-protein ligase 99.0 1.1E-09 3.7E-14 90.6 10.4 145 27-176 4-149 (150)
102 3rjv_A Putative SEL1 repeat pr 99.0 2E-08 6.9E-13 88.6 19.2 174 432-617 4-199 (212)
103 2pzi_A Probable serine/threoni 99.0 3.8E-09 1.3E-13 111.2 16.9 174 31-211 402-583 (681)
104 3qou_A Protein YBBN; thioredox 99.0 1.1E-08 3.7E-13 95.3 17.5 161 481-645 114-279 (287)
105 2fo7_A Synthetic consensus TPR 99.0 3.4E-08 1.2E-12 79.9 17.9 128 417-547 4-131 (136)
106 2fo7_A Synthetic consensus TPR 99.0 2.6E-08 9E-13 80.6 16.9 132 382-515 3-134 (136)
107 3urz_A Uncharacterized protein 99.0 1.8E-08 6.3E-13 88.7 16.7 191 56-272 4-196 (208)
108 2pzi_A Probable serine/threoni 99.0 1.2E-08 4.1E-13 107.4 17.6 159 391-555 402-568 (681)
109 3rjv_A Putative SEL1 repeat pr 99.0 4.3E-08 1.5E-12 86.5 18.5 180 466-654 3-201 (212)
110 2r5s_A Uncharacterized protein 99.0 8.8E-09 3E-13 88.0 13.4 162 382-546 8-171 (176)
111 3qou_A Protein YBBN; thioredox 98.9 3.7E-08 1.3E-12 91.6 18.2 154 29-187 126-281 (287)
112 4ga2_A E3 SUMO-protein ligase 98.9 3.4E-09 1.2E-13 87.6 9.8 139 392-533 9-148 (150)
113 2ifu_A Gamma-SNAP; membrane fu 98.9 9.8E-09 3.4E-13 96.8 13.7 187 393-581 4-224 (307)
114 2vsy_A XCC0866; transferase, g 98.9 7.4E-08 2.5E-12 99.7 19.2 152 393-547 2-156 (568)
115 2vsy_A XCC0866; transferase, g 98.9 3.8E-08 1.3E-12 101.9 17.1 155 33-192 2-159 (568)
116 2ifu_A Gamma-SNAP; membrane fu 98.9 5.6E-08 1.9E-12 91.6 16.1 130 416-546 78-222 (307)
117 3q7a_A Farnesyltransferase alp 98.8 1.6E-06 5.5E-11 80.7 24.9 224 390-618 64-334 (349)
118 3q7a_A Farnesyltransferase alp 98.8 2.2E-06 7.4E-11 79.9 25.4 177 29-211 63-257 (349)
119 4f3v_A ESX-1 secretion system 98.8 1.4E-07 4.9E-12 84.7 14.7 185 392-581 18-238 (282)
120 4f3v_A ESX-1 secretion system 98.8 2.5E-07 8.4E-12 83.2 16.0 189 32-225 18-237 (282)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.6E-07 2.6E-11 78.7 18.7 93 450-547 7-99 (213)
122 3gyz_A Chaperone protein IPGC; 98.7 5.5E-08 1.9E-12 79.7 10.0 97 518-617 35-135 (151)
123 3u3w_A Transcriptional activat 98.7 3.1E-06 1E-10 79.0 23.4 161 454-614 80-265 (293)
124 3u3w_A Transcriptional activat 98.7 1.6E-06 5.6E-11 80.9 20.3 161 387-547 82-265 (293)
125 4gco_A Protein STI-1; structur 98.7 3.2E-07 1.1E-11 72.8 13.2 98 56-155 13-110 (126)
126 4gco_A Protein STI-1; structur 98.7 3E-07 1E-11 73.0 12.8 112 299-420 10-121 (126)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.7E-06 9.1E-11 75.1 19.6 129 58-191 8-151 (213)
128 2qfc_A PLCR protein; TPR, HTH, 98.7 6.9E-06 2.4E-10 76.6 23.3 162 385-546 80-264 (293)
129 3dss_A Geranylgeranyl transfer 98.7 2.1E-05 7.2E-10 73.0 25.8 220 391-616 40-305 (331)
130 3gyz_A Chaperone protein IPGC; 98.6 8.7E-08 3E-12 78.5 8.8 98 55-154 35-132 (151)
131 2e2e_A Formate-dependent nitri 98.6 1.5E-07 5.1E-12 80.4 10.7 123 30-156 20-145 (177)
132 3gw4_A Uncharacterized protein 98.6 5.3E-07 1.8E-11 79.0 13.8 155 392-546 4-174 (203)
133 3dss_A Geranylgeranyl transfer 98.6 3.2E-05 1.1E-09 71.8 25.9 219 349-581 41-305 (331)
134 1a17_A Serine/threonine protei 98.6 9.9E-07 3.4E-11 74.2 14.8 88 29-119 22-109 (166)
135 1a17_A Serine/threonine protei 98.6 2E-06 6.8E-11 72.3 16.2 127 416-545 15-143 (166)
136 1p5q_A FKBP52, FK506-binding p 98.6 1.2E-07 4E-12 90.4 9.0 151 394-546 127-292 (336)
137 2c2l_A CHIP, carboxy terminus 98.6 2E-06 6.8E-11 79.5 16.9 100 265-367 3-102 (281)
138 2vgx_A Chaperone SYCD; alterna 98.6 4.3E-07 1.5E-11 74.5 10.7 110 42-155 9-118 (148)
139 2qfc_A PLCR protein; TPR, HTH, 98.6 1.7E-05 6E-10 73.9 23.0 166 93-258 77-264 (293)
140 3gw4_A Uncharacterized protein 98.5 8.5E-07 2.9E-11 77.6 12.6 121 31-153 3-134 (203)
141 1p5q_A FKBP52, FK506-binding p 98.5 1.5E-06 5.2E-11 82.6 15.2 126 485-613 148-292 (336)
142 2vyi_A SGTA protein; chaperone 98.5 2.1E-06 7.2E-11 68.6 13.9 119 55-176 11-129 (131)
143 2vgx_A Chaperone SYCD; alterna 98.5 8.9E-07 3E-11 72.6 11.6 95 451-547 23-117 (148)
144 2c2l_A CHIP, carboxy terminus 98.5 4.1E-07 1.4E-11 84.2 10.7 97 231-330 4-100 (281)
145 2e2e_A Formate-dependent nitri 98.5 1.7E-06 5.9E-11 73.7 13.8 120 392-513 22-144 (177)
146 2lni_A Stress-induced-phosphop 98.5 2.4E-06 8.3E-11 68.6 14.0 118 53-173 13-130 (133)
147 1na0_A Designed protein CTPR3; 98.5 3.2E-06 1.1E-10 66.9 14.2 114 56-172 9-122 (125)
148 2lni_A Stress-induced-phosphop 98.5 3.6E-06 1.2E-10 67.5 14.6 98 379-477 15-112 (133)
149 1na0_A Designed protein CTPR3; 98.5 5.4E-06 1.9E-10 65.5 15.4 93 418-512 13-105 (125)
150 2vyi_A SGTA protein; chaperone 98.5 2.3E-06 7.9E-11 68.4 12.6 118 91-211 12-129 (131)
151 2xcb_A PCRH, regulatory protei 98.4 9.7E-07 3.3E-11 72.0 9.6 99 54-154 16-114 (142)
152 3upv_A Heat shock protein STI1 98.4 5.5E-06 1.9E-10 65.8 13.9 95 451-547 6-100 (126)
153 2fbn_A 70 kDa peptidylprolyl i 98.4 7.1E-07 2.4E-11 77.8 8.6 144 394-539 18-176 (198)
154 3upv_A Heat shock protein STI1 98.4 5.4E-06 1.9E-10 65.8 12.9 95 58-154 6-100 (126)
155 2xcb_A PCRH, regulatory protei 98.4 3.2E-06 1.1E-10 68.8 11.3 92 26-120 24-115 (142)
156 4gcn_A Protein STI-1; structur 98.3 5E-06 1.7E-10 66.0 11.4 96 58-154 10-111 (127)
157 1elw_A TPR1-domain of HOP; HOP 98.3 1.2E-05 4.3E-10 62.6 13.7 97 57-155 5-101 (118)
158 2fbn_A 70 kDa peptidylprolyl i 98.3 1.3E-06 4.3E-11 76.2 8.4 26 94-119 41-66 (198)
159 3sz7_A HSC70 cochaperone (SGT) 98.3 9.8E-06 3.3E-10 67.9 13.7 96 450-547 12-107 (164)
160 2kck_A TPR repeat; tetratricop 98.3 4.2E-06 1.5E-10 64.6 10.7 98 55-154 5-105 (112)
161 1hxi_A PEX5, peroxisome target 98.3 3.4E-06 1.2E-10 66.3 10.0 94 23-119 20-113 (121)
162 3q49_B STIP1 homology and U bo 98.3 1.6E-05 5.4E-10 64.1 14.4 100 265-367 8-107 (137)
163 1elw_A TPR1-domain of HOP; HOP 98.3 2.1E-05 7.3E-10 61.2 14.5 95 451-547 6-100 (118)
164 1hxi_A PEX5, peroxisome target 98.3 7.7E-06 2.6E-10 64.2 11.6 91 455-547 23-113 (121)
165 4gcn_A Protein STI-1; structur 98.3 1.1E-05 3.8E-10 64.0 12.5 95 383-477 11-111 (127)
166 4b4t_Q 26S proteasome regulato 98.3 2.9E-05 1E-09 77.2 18.5 54 388-441 12-82 (434)
167 3sz7_A HSC70 cochaperone (SGT) 98.3 1.6E-05 5.5E-10 66.5 13.8 98 380-478 11-108 (164)
168 3ro3_A PINS homolog, G-protein 98.2 7.7E-06 2.6E-10 68.3 11.0 55 560-614 98-157 (164)
169 2kck_A TPR repeat; tetratricop 98.2 1.6E-05 5.5E-10 61.2 12.0 98 380-478 6-106 (112)
170 3q49_B STIP1 homology and U bo 98.2 2.1E-05 7.3E-10 63.3 12.9 97 380-477 9-105 (137)
171 2dba_A Smooth muscle cell asso 98.2 4.2E-05 1.4E-09 62.5 14.8 96 449-547 28-127 (148)
172 4b4t_Q 26S proteasome regulato 98.2 4.4E-05 1.5E-09 75.9 17.6 198 26-223 10-243 (434)
173 1elr_A TPR2A-domain of HOP; HO 98.2 9.2E-06 3.2E-10 64.8 10.1 98 57-155 5-108 (131)
174 2xev_A YBGF; tetratricopeptide 98.2 4.9E-05 1.7E-09 60.4 14.2 92 26-120 8-105 (129)
175 2dba_A Smooth muscle cell asso 98.2 9.6E-05 3.3E-09 60.3 15.9 95 232-330 29-127 (148)
176 1elr_A TPR2A-domain of HOP; HO 98.2 1.3E-05 4.4E-10 64.0 10.2 109 24-136 8-122 (131)
177 1wao_1 Serine/threonine protei 98.1 7.4E-06 2.5E-10 81.9 10.1 118 29-150 15-134 (477)
178 3rkv_A Putative peptidylprolyl 98.1 2.1E-05 7.3E-10 65.6 10.8 59 557-616 69-127 (162)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.5E-05 1.2E-09 76.7 14.1 119 486-607 270-406 (457)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.8E-06 1.3E-10 83.7 6.8 131 395-547 249-379 (457)
181 2xev_A YBGF; tetratricopeptide 98.1 0.0001 3.6E-09 58.4 14.1 93 385-478 7-105 (129)
182 3ro3_A PINS homolog, G-protein 98.1 1.9E-05 6.4E-10 65.9 10.1 131 416-546 11-156 (164)
183 3k9i_A BH0479 protein; putativ 98.1 5.9E-06 2E-10 64.5 6.1 87 33-120 3-90 (117)
184 2hr2_A Hypothetical protein; a 98.1 5.8E-05 2E-09 60.9 11.8 103 487-615 14-131 (159)
185 1dce_A Protein (RAB geranylger 98.0 0.00018 6.1E-09 73.3 18.1 172 393-569 42-244 (567)
186 1wao_1 Serine/threonine protei 98.0 4.1E-05 1.4E-09 76.5 13.3 158 387-546 13-195 (477)
187 3k9i_A BH0479 protein; putativ 98.0 1.3E-05 4.3E-10 62.6 7.2 85 462-547 3-89 (117)
188 1dce_A Protein (RAB geranylger 98.0 0.0003 1E-08 71.7 18.9 173 33-211 42-241 (567)
189 1ihg_A Cyclophilin 40; ppiase 98.0 4.8E-05 1.6E-09 73.1 12.4 80 559-640 281-360 (370)
190 2hr2_A Hypothetical protein; a 98.0 0.00013 4.3E-09 58.9 12.6 96 451-547 13-130 (159)
191 2if4_A ATFKBP42; FKBP-like, al 98.0 2.9E-05 9.8E-10 73.9 10.4 61 486-547 232-292 (338)
192 3rkv_A Putative peptidylprolyl 98.0 0.00011 3.7E-09 61.3 12.3 95 382-477 13-125 (162)
193 1ihg_A Cyclophilin 40; ppiase 98.0 6E-05 2.1E-09 72.4 12.2 121 23-145 226-360 (370)
194 3n71_A Histone lysine methyltr 97.9 8.9E-05 3.1E-09 73.5 11.7 123 493-615 318-464 (490)
195 1klx_A Cysteine rich protein B 97.9 0.00022 7.6E-09 57.2 12.0 111 499-617 10-128 (138)
196 2if4_A ATFKBP42; FKBP-like, al 97.8 4.2E-05 1.5E-09 72.7 8.3 146 23-190 182-328 (338)
197 1klx_A Cysteine rich protein B 97.7 0.0012 4.1E-08 52.9 14.7 110 395-514 10-127 (138)
198 3n71_A Histone lysine methyltr 97.7 0.00017 5.7E-09 71.6 11.4 121 528-648 318-462 (490)
199 2kat_A Uncharacterized protein 97.7 0.00018 6.3E-09 55.6 9.5 80 38-120 3-82 (115)
200 1zu2_A Mitochondrial import re 97.7 6.2E-05 2.1E-09 60.6 5.7 87 31-120 13-120 (158)
201 2kat_A Uncharacterized protein 97.6 0.00041 1.4E-08 53.5 9.9 79 398-477 3-81 (115)
202 1zu2_A Mitochondrial import re 97.6 0.00025 8.5E-09 57.1 7.9 98 391-491 13-131 (158)
203 2l6j_A TPR repeat-containing p 97.5 0.00013 4.5E-09 55.9 6.1 58 26-85 10-67 (111)
204 2l6j_A TPR repeat-containing p 97.5 0.00036 1.2E-08 53.4 8.5 91 381-472 5-101 (111)
205 1na3_A Designed protein CTPR2; 97.5 0.00084 2.9E-08 48.9 9.6 82 55-138 8-89 (91)
206 1na3_A Designed protein CTPR2; 97.5 0.00092 3.1E-08 48.7 9.7 78 382-460 11-88 (91)
207 3ma5_A Tetratricopeptide repea 97.4 0.00068 2.3E-08 50.7 7.9 66 53-119 4-69 (100)
208 3ma5_A Tetratricopeptide repea 97.3 0.0017 5.7E-08 48.5 9.1 62 484-546 7-68 (100)
209 2kc7_A BFR218_protein; tetratr 97.2 0.0007 2.4E-08 50.5 6.4 56 491-547 7-63 (99)
210 3ly7_A Transcriptional activat 97.1 0.012 4.1E-07 54.8 15.0 62 484-547 277-338 (372)
211 3ly7_A Transcriptional activat 97.1 0.0095 3.3E-07 55.5 13.8 142 378-523 192-347 (372)
212 3qww_A SET and MYND domain-con 97.1 0.0039 1.3E-07 60.7 11.7 94 496-614 310-410 (433)
213 3lvg_A Clathrin heavy chain 1; 97.0 6E-07 2E-11 84.4 -15.0 115 412-541 408-534 (624)
214 3qwp_A SET and MYND domain-con 96.9 0.0087 3E-07 58.4 13.0 97 493-614 296-399 (429)
215 3qww_A SET and MYND domain-con 96.7 0.0054 1.9E-07 59.7 9.7 88 563-650 310-411 (433)
216 3mkq_A Coatomer beta'-subunit; 96.7 0.04 1.4E-06 59.6 17.6 127 384-542 633-759 (814)
217 3bee_A Putative YFRE protein; 96.7 0.024 8.3E-07 41.1 10.8 47 500-547 25-71 (93)
218 3mkq_A Coatomer beta'-subunit; 96.7 0.046 1.6E-06 59.1 17.7 45 495-545 663-707 (814)
219 3mkq_B Coatomer subunit alpha; 96.7 0.098 3.3E-06 42.7 15.0 100 494-611 15-114 (177)
220 2kc7_A BFR218_protein; tetratr 96.6 0.013 4.5E-07 43.3 8.8 62 25-88 5-67 (99)
221 1pc2_A Mitochondria fission pr 96.6 0.015 5.3E-07 46.1 9.2 70 482-553 30-103 (152)
222 3bee_A Putative YFRE protein; 96.4 0.017 5.7E-07 42.0 8.4 46 108-154 26-71 (93)
223 4ady_A RPN2, 26S proteasome re 96.2 1.6 5.5E-05 46.3 32.5 26 94-119 233-258 (963)
224 3mkq_B Coatomer subunit alpha; 96.2 0.3 1E-05 39.9 15.1 50 27-83 12-61 (177)
225 3qwp_A SET and MYND domain-con 96.2 0.019 6.4E-07 56.0 9.7 92 456-547 294-399 (429)
226 2v5f_A Prolyl 4-hydroxylase su 96.2 0.029 9.9E-07 41.9 8.7 64 554-617 8-77 (104)
227 2v5f_A Prolyl 4-hydroxylase su 96.2 0.047 1.6E-06 40.7 9.9 66 487-554 8-79 (104)
228 3u64_A Protein TP_0956; tetrat 96.2 0.029 1E-06 49.9 9.8 54 565-618 218-272 (301)
229 3lvg_A Clathrin heavy chain 1; 96.1 1.7E-05 5.8E-10 74.8 -11.2 263 162-469 55-324 (624)
230 3u64_A Protein TP_0956; tetrat 96.1 0.062 2.1E-06 47.9 11.5 91 396-486 179-279 (301)
231 4h7y_A Dual specificity protei 96.0 0.15 5.1E-06 39.9 11.7 105 411-517 10-127 (161)
232 4ady_A RPN2, 26S proteasome re 96.0 2.1 7.1E-05 45.5 40.2 257 346-616 383-659 (963)
233 4h7y_A Dual specificity protei 96.0 0.066 2.3E-06 41.8 9.6 104 53-158 10-126 (161)
234 1pc2_A Mitochondria fission pr 95.9 0.04 1.4E-06 43.8 8.4 83 36-120 14-100 (152)
235 1wy6_A Hypothetical protein ST 95.5 0.61 2.1E-05 35.6 14.0 61 384-444 95-155 (172)
236 1nzn_A CGI-135 protein, fissio 95.3 0.12 4E-06 39.5 8.7 66 482-547 33-102 (126)
237 3ffl_A Anaphase-promoting comp 94.2 0.2 6.7E-06 40.2 7.8 130 479-617 13-153 (167)
238 4b4t_P 26S proteasome regulato 93.7 5.6 0.00019 38.8 22.2 194 351-547 30-246 (445)
239 4gns_B Protein CSD3, chitin bi 93.4 0.49 1.7E-05 49.2 11.2 48 586-635 613-660 (754)
240 1nzn_A CGI-135 protein, fissio 93.3 1.3 4.3E-05 33.8 10.5 82 396-477 17-102 (126)
241 1wy6_A Hypothetical protein ST 93.3 2.1 7.3E-05 32.7 16.6 137 139-297 20-156 (172)
242 3o48_A Mitochondria fission 1 93.2 1.5 5.1E-05 33.6 10.6 71 482-554 38-111 (134)
243 3ffl_A Anaphase-promoting comp 93.0 0.58 2E-05 37.5 8.6 35 521-555 124-158 (167)
244 4fhn_B Nucleoporin NUP120; pro 92.8 1.1 3.6E-05 50.2 13.8 61 487-547 902-966 (1139)
245 4gns_B Protein CSD3, chitin bi 92.6 1.4 4.8E-05 45.8 13.2 52 561-613 347-398 (754)
246 1y8m_A FIS1; mitochondria, unk 92.6 2.9 0.0001 32.5 13.0 72 481-554 36-110 (144)
247 4fhn_B Nucleoporin NUP120; pro 91.8 3.2 0.00011 46.3 16.1 129 128-258 901-1048(1139)
248 3o48_A Mitochondria fission 1 89.6 3.3 0.00011 31.7 9.3 62 556-617 45-109 (134)
249 2ff4_A Probable regulatory pro 89.5 1.7 5.9E-05 41.5 9.9 72 93-165 173-249 (388)
250 4b4t_P 26S proteasome regulato 89.5 16 0.00056 35.5 19.9 184 394-579 30-246 (445)
251 2ff4_A Probable regulatory pro 88.4 1.7 5.7E-05 41.6 8.9 55 386-440 177-231 (388)
252 1zbp_A Hypothetical protein VP 87.7 14 0.00048 32.5 14.5 117 493-615 6-129 (273)
253 1y8m_A FIS1; mitochondria, unk 87.6 8.5 0.00029 29.9 10.9 62 556-617 44-108 (144)
254 3txn_A 26S proteasome regulato 87.2 21 0.0007 33.9 18.3 164 382-546 21-208 (394)
255 1qsa_A Protein (soluble lytic 86.6 30 0.001 35.2 34.6 124 163-296 9-132 (618)
256 1v54_E Cytochrome C oxidase po 86.4 7.2 0.00025 28.0 8.6 47 467-513 28-74 (109)
257 2uwj_G Type III export protein 83.3 8.3 0.00028 27.5 7.7 50 561-616 49-98 (115)
258 1v54_E Cytochrome C oxidase po 83.1 11 0.00037 27.2 9.4 47 177-223 26-72 (109)
259 1zbp_A Hypothetical protein VP 83.0 22 0.00075 31.3 12.1 57 458-515 6-62 (273)
260 3txn_A 26S proteasome regulato 82.2 35 0.0012 32.3 22.6 221 385-618 104-346 (394)
261 4b4t_R RPN7, 26S proteasome re 81.5 10 0.00034 36.8 10.9 98 450-547 132-236 (429)
262 1qsa_A Protein (soluble lytic 81.4 50 0.0017 33.7 35.0 74 61-140 77-150 (618)
263 3esl_A Checkpoint serine/threo 81.4 5.8 0.0002 33.0 7.6 53 567-619 95-148 (202)
264 2y69_E Cytochrome C oxidase su 80.6 16 0.00056 27.9 8.9 60 467-527 71-130 (152)
265 2uwj_G Type III export protein 78.8 15 0.00053 26.2 9.4 88 33-130 19-106 (115)
266 2p58_C Putative type III secre 78.7 16 0.00053 26.2 7.8 50 135-190 49-98 (116)
267 2y69_E Cytochrome C oxidase su 78.4 20 0.0007 27.4 9.4 46 179-224 71-116 (152)
268 2p58_C Putative type III secre 78.2 16 0.00056 26.1 10.1 88 33-130 20-107 (116)
269 4b4t_R RPN7, 26S proteasome re 76.7 32 0.0011 33.2 12.8 98 416-513 133-237 (429)
270 4a1g_A Mitotic checkpoint seri 74.6 15 0.0005 29.1 7.8 52 568-619 82-134 (152)
271 2wpv_A GET4, UPF0363 protein Y 74.5 51 0.0017 30.0 21.3 25 301-325 133-157 (312)
272 3esl_A Checkpoint serine/threo 73.4 39 0.0013 28.2 10.7 57 279-335 92-148 (202)
273 3lpz_A GET4 (YOR164C homolog); 72.9 58 0.002 29.9 22.2 25 301-325 135-159 (336)
274 2wvi_A Mitotic checkpoint seri 71.3 10 0.00035 30.4 6.3 52 568-619 77-129 (164)
275 4aez_C MAD3, mitotic spindle c 69.6 13 0.00045 31.5 6.9 52 568-619 131-183 (223)
276 2w2u_A Hypothetical P60 katani 60.4 25 0.00086 24.3 5.8 16 598-613 31-46 (83)
277 3ltm_A Alpha-REP4; protein eng 59.1 78 0.0027 26.4 19.9 142 54-211 31-172 (211)
278 3lpz_A GET4 (YOR164C homolog); 58.1 1.1E+02 0.0039 28.0 24.3 83 411-512 133-215 (336)
279 4a1g_A Mitotic checkpoint seri 55.7 74 0.0025 25.1 9.8 51 285-335 84-134 (152)
280 3mv2_A Coatomer subunit alpha; 55.4 86 0.0029 28.4 9.7 29 590-618 211-239 (325)
281 3eiq_C Programmed cell death p 54.8 1.3E+02 0.0045 27.9 11.3 65 234-299 220-286 (358)
282 2wpv_A GET4, UPF0363 protein Y 54.8 1.2E+02 0.0043 27.4 21.7 26 412-437 132-157 (312)
283 4gq2_M Nucleoporin NUP120; bet 53.8 1.4E+02 0.0046 32.6 13.1 131 26-175 816-950 (950)
284 2v6y_A AAA family ATPase, P60 52.7 37 0.0013 23.5 5.6 14 598-611 23-36 (83)
285 3ltj_A Alpharep-4; protein eng 50.4 1.1E+02 0.0036 25.3 20.1 142 54-211 26-167 (201)
286 2wvi_A Mitotic checkpoint seri 48.9 1E+02 0.0035 24.7 9.9 51 285-335 79-129 (164)
287 1wfd_A Hypothetical protein 15 48.0 41 0.0014 23.9 5.4 12 564-575 28-39 (93)
288 3ltm_A Alpha-REP4; protein eng 47.2 1.2E+02 0.0042 25.2 19.8 142 89-246 31-172 (211)
289 3eiq_C Programmed cell death p 46.2 1.9E+02 0.0064 26.9 11.8 24 200-223 58-81 (358)
290 1bpo_A Protein (clathrin); cla 46.0 1.1E+02 0.0037 29.5 9.2 44 463-509 343-386 (494)
291 1oai_A Nuclear RNA export fact 41.1 51 0.0017 20.9 4.4 34 23-56 22-56 (59)
292 2v6x_A Vacuolar protein sortin 40.6 68 0.0023 22.2 5.6 13 599-611 26-38 (85)
293 4aez_C MAD3, mitotic spindle c 39.2 1.8E+02 0.0061 24.7 9.1 52 431-482 131-183 (223)
294 2qx5_A Nucleoporin NIC96; mRNA 38.6 3.4E+02 0.012 27.8 20.3 17 597-613 549-565 (661)
295 1bpo_A Protein (clathrin); cla 38.4 2.8E+02 0.0096 26.8 12.6 109 29-143 338-446 (494)
296 4a5x_A MITD1, MIT domain-conta 38.4 70 0.0024 22.3 5.2 14 564-577 29-42 (86)
297 3ltj_A Alpharep-4; protein eng 37.4 1.7E+02 0.0058 24.0 19.0 111 89-211 26-136 (201)
298 2fe3_A Peroxide operon regulat 36.1 98 0.0033 24.1 6.5 59 475-534 13-71 (145)
299 3c1d_A Protein ORAA, regulator 35.0 1.7E+02 0.0058 23.2 10.5 99 430-533 46-144 (159)
300 2crb_A Nuclear receptor bindin 34.3 70 0.0024 22.4 4.4 25 588-612 17-41 (97)
301 2d2s_A Exocyst complex compone 34.1 2.3E+02 0.0078 24.4 9.6 21 98-118 25-45 (235)
302 2ijq_A Hypothetical protein; s 33.8 1.8E+02 0.0062 23.2 7.8 52 68-119 44-103 (161)
303 2cpt_A SKD1 protein, vacuolar 32.5 86 0.0029 23.4 5.2 11 638-648 74-84 (117)
304 1mzb_A Ferric uptake regulatio 31.9 1.1E+02 0.0036 23.6 6.0 58 475-533 9-67 (136)
305 2w57_A Ferric uptake regulatio 31.8 1E+02 0.0036 24.2 6.0 59 475-534 8-67 (150)
306 3mv2_A Coatomer subunit alpha; 31.7 3E+02 0.01 25.0 11.4 20 347-366 124-143 (325)
307 2d2s_A Exocyst complex compone 30.9 2.6E+02 0.0088 24.1 9.5 90 131-223 23-118 (235)
308 3ph0_C ASCG; type III secretio 30.8 72 0.0025 19.9 3.6 12 595-606 49-60 (61)
309 2ijq_A Hypothetical protein; s 30.8 2E+02 0.007 22.9 8.5 51 427-477 45-103 (161)
310 2xig_A Ferric uptake regulatio 30.7 1.9E+02 0.0066 22.6 7.5 44 96-139 31-74 (150)
311 2xig_A Ferric uptake regulatio 30.7 1.9E+02 0.0066 22.6 7.9 59 475-534 18-76 (150)
312 3bge_A Predicted ATPase; struc 30.5 2.3E+02 0.0079 23.4 9.5 20 105-124 21-40 (201)
313 3pvs_A Replication-associated 30.3 3.8E+02 0.013 25.8 12.3 56 138-193 267-327 (447)
314 3e3v_A Regulatory protein RECX 29.6 2.3E+02 0.0077 23.0 10.7 113 431-546 50-164 (177)
315 4gq2_M Nucleoporin NUP120; bet 29.1 4.5E+02 0.015 28.6 12.3 132 307-463 815-950 (950)
316 2nsz_A Programmed cell death p 29.1 1.9E+02 0.0064 22.0 7.3 25 417-441 10-34 (129)
317 3bge_A Predicted ATPase; struc 29.1 2.5E+02 0.0084 23.3 8.3 34 461-494 19-52 (201)
318 2r9g_A AAA ATPase, central reg 28.7 2.5E+02 0.0087 23.3 10.4 17 105-121 28-44 (204)
319 3ctd_A Putative ATPase, AAA fa 27.9 2.7E+02 0.0092 23.3 9.4 32 94-125 35-69 (213)
320 2fe3_A Peroxide operon regulat 27.5 2.1E+02 0.0073 22.1 7.2 14 107-120 37-50 (145)
321 4ets_A Ferric uptake regulatio 27.2 1.1E+02 0.0039 24.4 5.6 48 94-141 35-84 (162)
322 3eab_A Spastin; spastin, MIT, 26.3 54 0.0018 22.9 2.9 12 600-611 33-44 (89)
323 3hra_A Ankyrin repeat family p 26.0 1.6E+02 0.0056 23.9 6.9 16 67-82 13-28 (201)
324 3hra_A Ankyrin repeat family p 25.7 1.6E+02 0.0056 23.9 6.8 12 278-289 14-25 (201)
325 1wdy_A 2-5A-dependent ribonucl 25.7 3.3E+02 0.011 23.6 10.1 45 531-575 191-240 (285)
326 1mzb_A Ferric uptake regulatio 24.8 1.8E+02 0.0063 22.2 6.3 58 440-498 9-67 (136)
327 2ion_A PDCD4, programmed cell 24.5 1.7E+02 0.0057 23.1 5.9 25 417-441 12-36 (152)
328 3ax2_A Mitochondrial import re 24.3 1.6E+02 0.0056 19.6 5.3 38 591-633 22-59 (73)
329 4b4t_S RPN3, 26S proteasome re 24.0 5.3E+02 0.018 25.4 12.2 27 126-152 231-257 (523)
330 2r9g_A AAA ATPase, central reg 23.2 3.3E+02 0.011 22.7 9.8 55 461-516 26-85 (204)
331 3eyy_A Putative iron uptake re 23.1 1.6E+02 0.0055 22.9 5.7 34 500-533 33-66 (145)
332 1wdy_A 2-5A-dependent ribonucl 22.6 1.5E+02 0.005 26.0 6.2 77 496-576 191-275 (285)
333 2w57_A Ferric uptake regulatio 22.1 1.9E+02 0.0066 22.6 6.0 60 439-499 7-67 (150)
334 3eyy_A Putative iron uptake re 22.0 1.9E+02 0.0064 22.5 5.8 13 109-121 35-47 (145)
335 2fu4_A Ferric uptake regulatio 21.5 1.9E+02 0.0066 19.4 6.6 32 142-173 33-64 (83)
336 3t8k_A Uncharacterized protein 21.3 2.5E+02 0.0087 22.8 6.9 23 103-125 47-69 (186)
337 3bu8_A Telomeric repeat-bindin 20.7 3.8E+02 0.013 22.6 12.2 22 203-224 121-142 (235)
338 3kea_A K1L; tropism, ANK repea 20.7 4.3E+02 0.015 23.2 8.9 202 66-294 38-246 (285)
339 4ets_A Ferric uptake regulatio 20.6 1.9E+02 0.0065 23.1 5.7 59 117-176 24-84 (162)
340 2keb_A DNA polymerase subunit 20.5 2.4E+02 0.0082 20.1 6.6 28 471-498 31-58 (101)
341 2b7e_A PRE-mRNA processing pro 20.4 83 0.0029 20.0 2.7 29 213-241 3-31 (59)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-39 Score=343.35 Aligned_cols=487 Identities=13% Similarity=0.033 Sum_probs=361.5
Q ss_pred cCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006071 124 RSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMI 203 (662)
Q Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 203 (662)
+++..|+.++..+.+.|++++|+.+|+++.. ..|+..++..++.+|...|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 4445555555555555555555555555543 2344455555555555555555555555554332 34555555555
Q ss_pred HHHhhcCChHHHHHHHHHHHH---------------CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 006071 204 NGYNRFKKMDEAEKLFAEMKE---------------KNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVT 268 (662)
Q Consensus 204 ~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (662)
.+|.+.|++++|.++|+++.. .+.+++..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 555555555555555553211 1234457788888888888888888888888887753 334555
Q ss_pred HHHHHHHHHhCCCHHHHHH--H-HHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006071 269 YTALLPGLCDAGKMVEVQK--V-LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (662)
Q Consensus 269 ~~~ll~~~~~~g~~~~a~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (662)
+..+...+...+..+.+.. + +..+...+..+ ...++..++..|.+.|++++|..+|+++.+. +++..++..++.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF-LRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH-HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHH-HHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 5555544433322222111 1 33333322222 3344555677788889999999999988765 688999999999
Q ss_pred HHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
.|.+.|++++|+.+|+++.+.. + .+..++..++.++...|+.++|..+++.+.+..+.+..+++.++.+|.
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID----P-----YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----T-----TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC----c-----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 9999999999999999997643 2 256789999999999999999999999999888889999999999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHH
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASR 505 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 505 (662)
+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|.+
T Consensus 385 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998753 3368899999999999999999999999998753 4477889999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCC-----HHHHHHHHhccCCHHHHHHHHHH
Q 006071 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQS----GSVPN-----FDSLLSVLSEKGKTIAAVKLLDF 576 (662)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~ 576 (662)
+|+++.+..+. +..+|..++.+|.+.|++++|+++++++.+. +..|+ +..++.+|...|++++|.+++++
T Consensus 463 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999987655 7888999999999999999999999999874 66776 23577788899999999999999
Q ss_pred HhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 006071 577 CLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLN 632 (662)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (662)
+++.+ +.+...|..++.+|.+.|++++|.+.++++++..+ .+...+..|..+|.
T Consensus 542 ~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 542 GLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-NEIMASDLLKRALE 595 (597)
T ss_dssp HHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTC
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 99876 34677888999999999999999999999998743 35555555655543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.2e-40 Score=344.08 Aligned_cols=501 Identities=12% Similarity=0.073 Sum_probs=279.7
Q ss_pred hcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHH
Q 006071 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKR 147 (662)
Q Consensus 68 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 147 (662)
..|....+...+..+.. ++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 33444444444443322 35556666666666666666666666666542 3555666666666666666666666
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHhhcCCh
Q 006071 148 YFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR---------------GISLDVVTYNTMINGYNRFKKM 212 (662)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~~ 212 (662)
+|+++.. .+++..+++.++.+|.+.|++++|..+|+++... +.+++..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 6666543 2445566666666666666666666666632211 2233466666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH--H-HHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR--I-FDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL 289 (662)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 289 (662)
++|.++|+++.+.+ +.+...+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 66666666666543 2234444444444333322221111 1 333333333333444555555666666666666666
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhh
Q 006071 290 REMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEII 369 (662)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 369 (662)
+++.+. |.+..++..++..+.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|..+++.+.+..
T Consensus 296 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 369 (597)
T 2xpi_A 296 SSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-- 369 (597)
T ss_dssp HTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--
T ss_pred HHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--
Confidence 665543 2356666666666666666666666666665543 3455566666666666666666666666664322
Q ss_pred ccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 006071 370 LRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA 449 (662)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 449 (662)
+.+..++..++..|.+.|++++|..+|+++.+..+.+..+|+.++.+|.+.|++++|.++|+.+.+.+ +.+.
T Consensus 370 -------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 441 (597)
T 2xpi_A 370 -------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTH 441 (597)
T ss_dssp -------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCS
T ss_pred -------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 12345566666666666666666666666666556666666666666666666666666666666543 2355
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKEN--LDLVA 523 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~ 523 (662)
.+|..++.+|.+.|++++|..+|+++.+.. +.+..++..++..|.+.|++++|.++|+++.+. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 666666666666666666666666666532 234556666666666666666666666666554 44454 55666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 006071 524 KILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595 (662)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (662)
.++.+|.+.|++++|+++++++.+.. |+ +..++.+|...|++++|.++++++++..+. ++..+..++.+
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~ 593 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 66666666666666666666666522 32 234555666666666666666666665422 33444444443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=7.8e-28 Score=238.18 Aligned_cols=382 Identities=15% Similarity=0.089 Sum_probs=261.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 105 (662)
+...+...|++++|++.|+.+.+.. |.+..++..+..++...|++++|...++...+..+ .+..+|..+...+.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCC
Confidence 3456677888888888888888776 67777888888888888888888888888776543 36778888888888888
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFE 185 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 185 (662)
++++|...|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+.++ .+...+..+...+...|++++|...|+
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888888888887754 34566788888888888888888888888876532 234456666667777788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006071 186 DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (662)
Q Consensus 186 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (662)
++.+..+ .+..+|..+..++...|++++|...|+++...+ +.+...|..+...+...|++++|...|++..... +.+
T Consensus 160 ~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 160 KAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 8776532 256777777777788888888888887777653 3345667777777777777777777777766542 334
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006071 266 AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (662)
Q Consensus 266 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (662)
..++..+..++...|++++|...++++.+. .|.+..++..++..+.+.|++++|...|+++.+.. +.+..++..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 566677777777777777777777777664 45556666667777777777777777776666543 455566666666
Q ss_pred HHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
.+.+.|++++|...++++++.. +.+..++..+..++...|++++|...|+++.+..|.++.++..+...+.
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVF---------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC---------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 6666666666666666653211 1123345555555555555555555555555555555555555555444
Q ss_pred hc
Q 006071 426 KE 427 (662)
Q Consensus 426 ~~ 427 (662)
..
T Consensus 385 ~~ 386 (388)
T 1w3b_A 385 EM 386 (388)
T ss_dssp HT
T ss_pred Hc
Confidence 33
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.4e-27 Score=234.68 Aligned_cols=378 Identities=15% Similarity=0.109 Sum_probs=194.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 006071 101 YGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180 (662)
Q Consensus 101 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 180 (662)
+.+.|++++|.+.+..+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 334444444444444444332 2233334444444444444555544444444331 22344444444444455555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006071 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF 260 (662)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (662)
...|+++.+.. +.+...|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++...
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55555444432 1133444455555555555555555555544432 122333444444555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 006071 261 DVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHY 340 (662)
Q Consensus 261 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (662)
. +.+..+|..+...+...|++++|...|+++.+. .|.+...+..+...+...|++++|...+.+..... |.+..++
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 1 223445555555555555555555555555553 34455555555555555555555555555555432 3344555
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHH
Q 006071 341 GILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420 (662)
Q Consensus 341 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (662)
..+...|...|++++|+..|+++++.. | .+..++..+..++...|++++|...|+.+.+..|.++.++..+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~----p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ----P-----HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC----S-----SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC----C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 555555566666666666665554422 1 1233455556666666666666666666666666666666666
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcC
Q 006071 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDG 498 (662)
Q Consensus 421 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 498 (662)
...+...|++++|...++.+.+.. +.+..++..++.++.+.|++++|...++++.+. .|+ ...+..+...+...|
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 666666666666666666666542 234566666666666666666666666666642 232 444555555544443
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=6.1e-29 Score=248.69 Aligned_cols=204 Identities=18% Similarity=0.249 Sum_probs=154.5
Q ss_pred HHHHHHhcccCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCC---------hhH
Q 006071 75 ARCILLDMPKKGVQWDE-DMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR---------YMM 144 (662)
Q Consensus 75 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---------~~~ 144 (662)
+..+.+.+.+.+....+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. .+.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34455556555554443 45777788888888888888888888888888888888888888876554 567
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 006071 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (662)
Q Consensus 145 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 224 (662)
|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006071 225 KNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278 (662)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 278 (662)
.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888888888888777664
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.7e-28 Score=244.04 Aligned_cols=205 Identities=19% Similarity=0.219 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHcCCCcCHH-hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC---------HH
Q 006071 109 ESVKIFDIMKQLGVERSVK-SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK---------LE 178 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~ 178 (662)
.+..+.+.+.+.+..+.+. .++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3445556666666555443 4777788888888888888888888888888888888888888876554 56
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006071 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (662)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (662)
.|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 006071 259 SFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK 314 (662)
Q Consensus 259 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (662)
+.|+.||..||+.++.+|++.|+.++|.+++++|.+.+..| +..+++.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV-SKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB-CHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888877777 77777777777665
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.2e-24 Score=219.64 Aligned_cols=455 Identities=11% Similarity=-0.011 Sum_probs=239.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (662)
...+...+..+.+.|++++|...|+++.+.+ |+..++..+..++...|++++|...|+.+.+.+ +.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3445555666666666666666666665543 355566666666666666666666666665543 3445556666666
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHH
Q 006071 136 ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEA 215 (662)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 215 (662)
+...|++++|...|+++...+. ++......++..+........+...+..+...+..|+...+..-...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------- 151 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER---------- 151 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH----------
Confidence 6666666666666666655432 23333333333332222222222222222222111111111100000
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHH
Q 006071 216 EKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD---AGKMVEVQKVLREM 292 (662)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~ 292 (662)
.......|+.......+..+...... .....+.+...+......+.. .|++++|..+++++
T Consensus 152 ------~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 152 ------KDKQENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ------HhhccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 00000111111111111100000000 000001123334444443443 67777777777777
Q ss_pred HH-----cCCC-------CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 006071 293 VE-----RYIP-------PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360 (662)
Q Consensus 293 ~~-----~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 360 (662)
.. .... |.+..++..++..+...|+++.|...++.+.... |+...+..+...|...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66 2112 2234556666667777777777777777766653 22666666666777777777777777
Q ss_pred HHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006071 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIM 440 (662)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 440 (662)
+.+++.. +.+...+..+...+...|++++|...++.+....+.+..++..+...+...|++++|...++.+
T Consensus 294 ~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 294 DKALKLD---------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp HHHHTTC---------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHhhcC---------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7664322 1234456666666667777777777777777666666666777777777777777777777766
Q ss_pred hhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----HHhHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 006071 441 GRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS-PA----SSLFRSVMESLFE---DGRVQTASRVMKSMVE 512 (662)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 512 (662)
.+.. +.+...+..+...+...|++++|...++++.+.... ++ ...+..+...+.. .|++++|...++.+.+
T Consensus 365 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 365 KRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 6542 224556666667777777777777777666643211 11 2255666666666 6777777777777666
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 006071 513 KGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (662)
Q Consensus 513 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (662)
..+. +...+..++.+|...|++++|.+.++++.+ ..|+..
T Consensus 444 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 444 LDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred hCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 5443 455666666667777777777777766665 444433
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.4e-24 Score=217.73 Aligned_cols=448 Identities=10% Similarity=0.043 Sum_probs=263.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (662)
......+...|++++|+..|+.+++.+ |++.+|..++.++...|++++|...++++.+.++. +..++..+..++..
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHH
Confidence 445668889999999999999999986 58999999999999999999999999999987654 78899999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006071 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRF 183 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 183 (662)
.|++++|...|+.+...+ +++......++..+........+.+.+..+...+..|+...+..-.........
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 157 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN------- 157 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C-------
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC-------
Confidence 999999999999999876 345555555666555544444454444444333333333322221111111111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHhh-
Q 006071 184 FEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA---VERADDALRIFDEMKS- 259 (662)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~- 259 (662)
.|+.......+..+...... .....+.+...+......+.. .|++++|...|+++..
T Consensus 158 ---------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 218 (514)
T 2gw1_A 158 ---------LPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218 (514)
T ss_dssp ---------CCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred ---------CchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 12222211111111100000 000001122233333333332 4555555555555544
Q ss_pred ----CCC--------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006071 260 ----FDV--------KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327 (662)
Q Consensus 260 ----~~~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 327 (662)
... +.+..++..+...+...|++++|...++++... .|. ...+..++..+...|+++.|...++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--FPR-VNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--CCC-HHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred hhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 200 112334555555556666666666666666554 342 55555666666666666666666666
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006071 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407 (662)
Q Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (662)
+.... +.+...+..+...|...|++++|+..++.+++.. + .+...+..+...+...|++++|...++.+.
T Consensus 296 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 296 ALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD----P-----ENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp HHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC----S-----SCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----h-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65543 3445556666666666666666666666665432 1 133455556666666666667776666666
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC----HHhHHHHHHHHHh---cCChHHHHHHHHHHHHcC
Q 006071 408 KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-RD----ADAYICLIESYLR---KGEPADAKTALDSMIEDG 479 (662)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 479 (662)
+..+.++.++..+...+...|++++|...++.+.+.... ++ ...+..+..++.. .|++++|...++++.+..
T Consensus 366 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 666666666777777777777777777777766553211 11 2366777777777 777777777777777543
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006071 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK 516 (662)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 516 (662)
+.+..++..+...+...|++++|...++++.+..+.
T Consensus 446 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 446 -PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred -cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 234556666777777777777777777777776544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3.6e-22 Score=202.02 Aligned_cols=301 Identities=19% Similarity=0.186 Sum_probs=165.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 006071 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLL 309 (662)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (662)
+...+..+...+.+.|++++|+.+|+.+.... +.+..++..+..++...|++++|...++++.+. .|.+..++..++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 33444444555555555555555555544331 234444555555555555555555555555443 233445555555
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCh---hhHHHH------------HHHHHcCCcHHHHHHHHHHHHHhhhhccCCC
Q 006071 310 GVQCKSGHLNAAADVLKAMIRLSIPTEA---GHYGIL------------IENFCKAEMYDRAIKLLDKLVEKEIILRPQS 374 (662)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 374 (662)
.++...|++++|...|+.+.+.. +.+. ..+..+ ...+...|++++|+..|+.+++.. +
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~-- 174 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----V-- 174 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----T--
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C--
Confidence 55555555555555555554432 1122 222222 334566677777777777665432 1
Q ss_pred CCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHH
Q 006071 375 TLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYIC 454 (662)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (662)
.+...+..+..++...|++++|...|+.+.+..+.++.++..++.+|...|++++|...|+.+.... +.+...+..
T Consensus 175 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 250 (450)
T 2y4t_A 175 ---WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAH 250 (450)
T ss_dssp ---TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ---CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHH
Confidence 2344566666666677777777777777666666666677777777777777777777776666542 123333333
Q ss_pred H------------HHHHHhcCChHHHHHHHHHHHHcCCCCc-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 455 L------------IESYLRKGEPADAKTALDSMIEDGHSPA-----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE 517 (662)
Q Consensus 455 l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 517 (662)
+ +..+...|++++|...++++.+.. |+ ...+..+...+.+.|++++|...++++.+..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~- 327 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD- 327 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-
Confidence 3 555666666666666666665432 22 224455555566666666666666666555333
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 518 NLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 518 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+...|..++.+|...|++++|+..++++++
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455555566666666666666666666655
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=3.2e-22 Score=207.47 Aligned_cols=253 Identities=12% Similarity=0.061 Sum_probs=159.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcHH-------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCc
Q 006071 280 GKMVEVQKVLREMVERYIPPKDNS-------VFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEM 352 (662)
Q Consensus 280 g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 352 (662)
|++++|..+++++.+. .|.+.. ++..+...+...|+++.|...++.+.+. .|+...+..+...|...|+
T Consensus 216 ~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcC
Confidence 3566666666666653 343332 3444555566666777777777766664 2345666666666777777
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhH
Q 006071 353 YDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDS 432 (662)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 432 (662)
+++|...++.+++.. + .+..++..+...+...|++++|...++.+.+..+.+..++..+..++...|++++
T Consensus 292 ~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 362 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLN----P-----EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTE 362 (537)
T ss_dssp CHHHHHHHHHHHHHC----T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhccC----C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 777777777665433 1 1344566666667777777777777777777666666677777777777777777
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C----cHHhHHHHHHHHHhc----------
Q 006071 433 AFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS-P----ASSLFRSVMESLFED---------- 497 (662)
Q Consensus 433 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~---------- 497 (662)
|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... + ....+......+...
T Consensus 363 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 363 SEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 777777776643 234566677777777777777777777776643200 0 111122333445555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
|++++|...++++.+..+. +...+..++.+|...|++++|++.++++.+
T Consensus 442 ~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777777777777776544 556667777777777777777777777776
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.2e-22 Score=201.50 Aligned_cols=318 Identities=14% Similarity=0.089 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006071 37 EHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDI 116 (662)
Q Consensus 37 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 116 (662)
..+...+..+...+ |.+...+..++..+.+.|++++|..+|+++.+..+ .+..++..+..++...|++++|...|++
T Consensus 9 ~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444555555554 56677777777777777778878777777776543 2677777777777777778888777777
Q ss_pred HHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCH---HHHHHH------------HHHHHhcCCHHHHH
Q 006071 117 MKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTR---HTYNVM------------LWGFFLSLKLETAI 181 (662)
Q Consensus 117 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~ 181 (662)
+.+.+ +.+..++..+..++.+.|++++|...|+++.+.++ .+. ..+..+ ...+...|++++|.
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77654 34566777777777777888888877777776432 122 344333 33366778888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006071 182 RFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD 261 (662)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 261 (662)
..|+.+.+.. +.+...+..+..+|...|++++|..+|+.+.... +.+..+|..+...|...|++++|+..|+++....
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888877653 2367777788888888888888888888877542 4466778888888888888888888888877542
Q ss_pred CCCCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCChHHHHHHH
Q 006071 262 VKPNAVTYTAL------------LPGLCDAGKMVEVQKVLREMVERYIPPKD----NSVFMKLLGVQCKSGHLNAAADVL 325 (662)
Q Consensus 262 ~~~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 325 (662)
+.+...+..+ ...+...|++++|...++++... .|.+ ...+..++.++.+.|++++|...+
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2334444433 67777888888888888888774 4534 336677778888888888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 006071 326 KAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVE 365 (662)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 365 (662)
+.+.... +.+...+..+..+|...|++++|...++++++
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8877653 45677788888888888888888888888864
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.8e-22 Score=209.41 Aligned_cols=403 Identities=13% Similarity=0.080 Sum_probs=309.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (662)
......+...|++++|+..|+.+++.+ |.++.++..++.++...|++++|.+.++++...++. +..++..+..++..
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 445668889999999999999999987 789999999999999999999999999999887654 78899999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCC------CCcCHHH--------------
Q 006071 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG------IEPTRHT-------------- 163 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~-------------- 163 (662)
.|++++|...|+.+ .. .|+ .....+..+...+....|...++.+.... ..|+...
T Consensus 106 ~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 99999999999744 22 222 22233445555566677888888875421 1122221
Q ss_pred ----------------HHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhhcCCh
Q 006071 164 ----------------YNVMLWGFF--------LSLKLETAIRFFEDMKSRGISLDV-------VTYNTMINGYNRFKKM 212 (662)
Q Consensus 164 ----------------~~~ll~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~ 212 (662)
...+...+. ..|++++|..+++.+.+.... +. .++..+...+...|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccH
Confidence 111111111 124788999999999876432 32 3466677888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREM 292 (662)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 292 (662)
++|...|+.+... .|+...+..+...+...|++++|...|+++.... +.+..++..+...+...|++++|...++++
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999886 4668889999999999999999999999998764 557888999999999999999999999999
Q ss_pred HHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccC
Q 006071 293 VERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRP 372 (662)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 372 (662)
... .|.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|+.+++....
T Consensus 337 ~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--- 410 (537)
T 3fp2_A 337 QSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV--- 410 (537)
T ss_dssp HHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc---
Confidence 986 56678899999999999999999999999998864 566778999999999999999999999999876521
Q ss_pred CCCCCCccccHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 006071 373 QSTLDMEASSYNPMIQHLCHN----------GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (662)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 442 (662)
..........+.....++... |++++|...|+.+.+..+.++.++..+..++...|++++|...|+.+.+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111111222234445566666 8888888888888887777788888888888888888888888888777
Q ss_pred CC
Q 006071 443 RG 444 (662)
Q Consensus 443 ~~ 444 (662)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 53
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=2.1e-17 Score=174.92 Aligned_cols=378 Identities=13% Similarity=0.098 Sum_probs=209.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAG-LFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
....+.+...|.+.+|+++++.+.-.+ .+..+...-+.++....+. +..+..++..+..+. + ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 344455556667777777776665322 1223444444455544444 445555554444321 1 223555556
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIR 182 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 182 (662)
..|.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++...|++++|..
T Consensus 1061 ~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6666777766666652 12222222222 456666666666654 135556666666666677776666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006071 183 FFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDV 262 (662)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 262 (662)
.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.++++....+. .
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 66443 255666666666666677777766666555432 23333334666666666665422221 1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 006071 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGI 342 (662)
Q Consensus 263 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 342 (662)
.++...|..+...|...|++++|..+|..+ ..|..++.++.+.|+++.|.+.+++. .+..+|..
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 344555556666666666777766666653 24666666666666666666666654 23456666
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (662)
+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++......+.+...|+-+..
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Ii-------------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIV-------------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhh-------------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 6666666666666666554331 123345566666666777777777776666655555556666655
Q ss_pred HHHhc--CChhHHHHHHHHHhhCCCCC------CHHhHHHHHHHHHhcCChHHHH
Q 006071 423 GHSKE--GNPDSAFEIVKIMGRRGVPR------DADAYICLIESYLRKGEPADAK 469 (662)
Q Consensus 423 ~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~ 469 (662)
++++. ++..++.+.|..-. ++++ +...|..++..|.+.|+++.|.
T Consensus 1323 LyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 55553 22233333332211 1222 3455666666666666666665
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=7e-19 Score=171.95 Aligned_cols=313 Identities=12% Similarity=0.019 Sum_probs=255.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (662)
..+...+...|++++|+..|+.+.+.. |.++.++..++.++...|++++|...++++.+..+. +...+..+...+..
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHH
Confidence 455668889999999999999999987 788999999999999999999999999999886543 77899999999999
Q ss_pred cCChhHHHHHHHHHHHcCCC---cCHHhHHHH------------HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006071 104 KGIVQESVKIFDIMKQLGVE---RSVKSYDAL------------FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML 168 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 168 (662)
.|++++|...|+.+.+.. + .+...+..+ ...+...|++++|+..++++.+.. +.+...+..+.
T Consensus 84 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp HTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 999999999999998854 2 244455444 577889999999999999998764 34677888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHH------------H
Q 006071 169 WGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYT------------T 236 (662)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------~ 236 (662)
..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+...+.. +.+...+. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 3478899999999999999999999999988753 23333333 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 006071 237 MIKGYVAVERADDALRIFDEMKSFDVKPNA----VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQ 312 (662)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (662)
+...+...|++++|...++++.... +.+. ..+..+..++...|++++|...+++..+. .|.+..++..+..++
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 3667889999999999999988753 2233 23455778888999999999999999886 576888999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006071 313 CKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENF 347 (662)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 347 (662)
...|++++|...|+.+.+.. |.+...+..+..+.
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 99999999999999998864 44455555555443
No 15
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=5.2e-18 Score=174.54 Aligned_cols=434 Identities=10% Similarity=0.079 Sum_probs=263.2
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCC
Q 006071 149 FNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE 228 (662)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 228 (662)
|++.++.. +-+...|..++. +.+.|+++.|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++.... .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 34444432 235667777776 35677777777777777765 3346677777777777777777777777777765 3
Q ss_pred CCHhhHHHHHHHH-HhcCCHHHHHH----HHHHHhh-CCCCC-CHHHHHHHHHHHHh---------CCCHHHHHHHHHHH
Q 006071 229 PTVISYTTMIKGY-VAVERADDALR----IFDEMKS-FDVKP-NAVTYTALLPGLCD---------AGKMVEVQKVLREM 292 (662)
Q Consensus 229 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~ 292 (662)
|+...|..++... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666666665422 33455555443 5555433 23332 34555555554433 45666677777666
Q ss_pred HHcCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhc
Q 006071 293 VERYIPPKD--NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIIL 370 (662)
Q Consensus 293 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 370 (662)
+.. |.. ...|..........|. . +...++. ...+++..|..++..........
T Consensus 157 l~~---P~~~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 157 CVN---PMINIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp TTS---CCTTHHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred Hhc---hhhhHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHh
Confidence 652 211 1222221111111110 0 0011110 12345677777666532211111
Q ss_pred cC-CCCCCCc--------cccHHHHHHHHHhc----CCh----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-------
Q 006071 371 RP-QSTLDME--------ASSYNPMIQHLCHN----GQT----GKAEIFFRQLMKKGVLDPVAFNNLIRGHSK------- 426 (662)
Q Consensus 371 ~~-~~~~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 426 (662)
.. ...++|+ ...|...+...... ++. ..+..+|+++....|.++..|..++..+..
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhh
Confidence 00 0112232 13444444333222 222 367788998888888889999888888875
Q ss_pred cCChh-------HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHHhc
Q 006071 427 EGNPD-------SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA--SSLFRSVMESLFED 497 (662)
Q Consensus 427 ~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 497 (662)
.|+++ +|..+++...+.-.+.+...|..++..+.+.|++++|..+++++++. .|+ ...|...+..+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 68877 88889988886212346788888888888899999999999998874 343 24677777777888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHhccCCHHHHHHHH
Q 006071 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEA-LLMRGHVEEALGRIDLMMQS-GSVPN-FDSLLSVLSEKGKTIAAVKLL 574 (662)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~~~~~~g~~~~A~~~~ 574 (662)
|++++|..+|+++++..+. +...+...+.. +...|++++|..+|++.++. +..|. +..++..+...|+.++|+.+|
T Consensus 370 ~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 8899999999988876433 33333222222 33578888888888887762 22222 334566666788888888888
Q ss_pred HHHhcCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 575 DFCLGRDCII---DLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 575 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
++++...+.+ ....|...+......|+.+.+.++.+++.+.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888764321 2335666677777788888888888887765
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=4.3e-19 Score=173.44 Aligned_cols=334 Identities=11% Similarity=0.059 Sum_probs=191.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006071 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (662)
Q Consensus 90 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 169 (662)
++..+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566677777777777777777777777654 3456677777777777777777777777776653 225566667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGIS--LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA 247 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 247 (662)
.+...|++++|...++.+.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777765220 12333333311100 01122234555666666
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006071 248 DDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327 (662)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 327 (662)
++|...++++.... +.+...+..+..++...|++++|...++++... .|.+...+..+...+...|+++.|...++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666665542 345556666666666666666666666666653 454666666666666666666666666666
Q ss_pred HHhCCCCCChhhHH------------HHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCC
Q 006071 328 MIRLSIPTEAGHYG------------ILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQ 395 (662)
Q Consensus 328 ~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (662)
..+.. +.+...+. .+...+...|++++|...++++++.. +.. .......+..+..++...|+
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~-~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSV-AEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSS-HHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCc-hHHHHHHHHHHHHHHHHccC
Confidence 65542 22222222 22444566666666666666665432 110 00000123334455556666
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006071 396 TGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (662)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (662)
+++|...++.+.+..+.++.++..+..++...|++++|...|+.+.+..+ .+...+..+..+
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 349 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 66666666666665555666666666666666666666666666655431 134444444333
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=2.3e-16 Score=167.12 Aligned_cols=519 Identities=13% Similarity=0.114 Sum_probs=323.0
Q ss_pred HHHHHHhhcCCCCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCC
Q 006071 9 RLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQ 88 (662)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 88 (662)
.+..++..+. ..+..-+..++...|.+++|..+|+.+. ....+...++. ..+++++|.++++++.
T Consensus 1039 Rv~eyI~kLd-~~d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aervn----- 1103 (1630)
T 1xi4_A 1039 RVMEYINRLD-NYDAPDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN----- 1103 (1630)
T ss_pred hHHHHHHHhh-hccHHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----
Confidence 3444555555 5667778888888999999999998762 22223333332 6778899988888662
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006071 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML 168 (662)
Q Consensus 89 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 168 (662)
++.+|..+..++...|++++|+..|.+. .+...|..++..+.+.|++++|.+.+....+.. +++...+.++
T Consensus 1104 -~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1104 -EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 5778889999999999999999988664 567788888999999999999999988876653 3333344577
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 006071 169 WGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERAD 248 (662)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (662)
.+|++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+...+.+.|+++
T Consensus 1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHH
Confidence 8888888887544332 2 346667777888888999999999998874 37888888999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006071 249 DALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAM 328 (662)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (662)
+|.+.+++. .+..+|..+..+|...|++..|......+.. ++..+..++..|.+.|.+++|+.+++..
T Consensus 1239 ~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv------~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1239 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999888876 3567888888888888888888887664322 5666778888889999999999999887
Q ss_pred HhCCCCCChhhHHHHHHHHHcC--CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHH
Q 006071 329 IRLSIPTEAGHYGILIENFCKA--EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQL 406 (662)
Q Consensus 329 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 406 (662)
.... +.....|.-+...|++. ++..++.+.|..-.+...+. ...-+...|..++..|.+.|+++.|....-.-
T Consensus 1307 L~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~----r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1307 LGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL----RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred hccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh----HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 7654 44555666666666653 44556666665442221100 01124456788888888888888877322111
Q ss_pred Hhc------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 006071 407 MKK------------GVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDS 474 (662)
Q Consensus 407 ~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 474 (662)
... ...++..|...+..|.. ....++.-+.......+. +...+..+.+.|+..-+..++..
T Consensus 1382 ~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~--~~P~~lndLl~~l~~rlD-----~~R~V~l~~~~~~l~lik~yl~~ 1454 (1630)
T 1xi4_A 1382 PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRS 1454 (1630)
T ss_pred cHhhhhhHHHHHHhcccccHHHHHHHHHHHHh--hChHHHHHHHHHhhhcCC-----hHHHHHHHHHcCChHHhHHHHHH
Confidence 100 14456666666666652 222333332222221111 22344445555555555555555
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHH------------HHHHHcCCCCCHHHHHHHHHH-HHhCCCHHHHHHH
Q 006071 475 MIEDGHSPASSLFRSVMESLFEDGRVQTASRVM------------KSMVEKGVKENLDLVAKILEA-LLMRGHVEEALGR 541 (662)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~------------~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~ 541 (662)
....+ +...-..+.+.+....+++.-..-. +++.+. ...-+..+... |.+.|+|..|+++
T Consensus 1455 vq~~n---~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l 1527 (1630)
T 1xi4_A 1455 VQNHN---NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVEL 1527 (1630)
T ss_pred HHHhc---chhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44322 1112222233333333332211111 111110 11122334333 3444777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006071 542 IDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYS 607 (662)
Q Consensus 542 ~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
+++-. .+...+....+.|+.+.+.+++...++.+ ....|......++..-+++-+++
T Consensus 1528 ~k~d~------l~~dAm~~a~~S~d~e~~e~ll~~F~~~~---~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1528 CKKDS------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred HHhcc------CHHHHHHHHHHcCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCchHHHH
Confidence 65332 23445666667777777777777666652 23445455555555556665554
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=7.9e-18 Score=173.22 Aligned_cols=217 Identities=10% Similarity=0.114 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 006071 284 EVQKVLREMVERYIPPKDNSVFMKLLGVQCK-------SGHLN-------AAADVLKAMIRLSIPTEAGHYGILIENFCK 349 (662)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 349 (662)
.+..+|++++.. .|.++.+|..++..+.+ .|+++ .|..+|++..+.-.|.+...|..++..+.+
T Consensus 256 ~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 444555555543 34455555555555443 45544 555555555542123345555555555555
Q ss_pred CCcHHHHHHHHHHHHHhhhhccCCCCCCCc--cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH-HHh
Q 006071 350 AEMYDRAIKLLDKLVEKEIILRPQSTLDME--ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRG-HSK 426 (662)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 426 (662)
.|++++|..+|+++++.. |+ ...|...+..+.+.|+.+.|..+|++..+..+.+...+...+.. +..
T Consensus 334 ~g~~~~A~~~~~~al~~~----------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIE----------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp TTCHHHHHHHHHHHHHSS----------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCcc----------ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 555555555555554321 11 12455555555555555666666665555543333333322222 223
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCc--HHhHHHHHHHHHhcCCHHHH
Q 006071 427 EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG-HSPA--SSLFRSVMESLFEDGRVQTA 503 (662)
Q Consensus 427 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a 503 (662)
.|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+.+
T Consensus 404 ~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred cCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 566666666666555432 2245556666666666666666666666665532 1221 22454555555555666666
Q ss_pred HHHHHHHHHc
Q 006071 504 SRVMKSMVEK 513 (662)
Q Consensus 504 ~~~~~~~~~~ 513 (662)
..+++++.+.
T Consensus 483 ~~~~~r~~~~ 492 (530)
T 2ooe_A 483 LKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=3.3e-17 Score=166.80 Aligned_cols=352 Identities=13% Similarity=0.059 Sum_probs=177.9
Q ss_pred CHHHHHHHHHHHhh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCH
Q 006071 195 DVVTYNTMINGYNR----FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA----VERADDALRIFDEMKSFDVKPNA 266 (662)
Q Consensus 195 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 266 (662)
+...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|..+|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444444444444 455555555555555443 44455555555555 555555555555555433 33
Q ss_pred HHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChh
Q 006071 267 VTYTALLPGLCD----AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK----SGHLNAAADVLKAMIRLSIPTEAG 338 (662)
Q Consensus 267 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 338 (662)
..+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 444444444444 455555555555555432 34445555555544 455555555555555432 344
Q ss_pred hHHHHHHHHHc----CCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 006071 339 HYGILIENFCK----AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH----NGQTGKAEIFFRQLMKKG 410 (662)
Q Consensus 339 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 410 (662)
.+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .++.++|..+|++..+.+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-----------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 44445555544 455555555555553321 22233444444443 455555555555555442
Q ss_pred CCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCC
Q 006071 411 VLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK-----GEPADAKTALDSMIEDGHS 481 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~ 481 (662)
++..+..+..+|.. .+++++|..+|+...+.+ +...+..+...|... +++++|...+++..+.+
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-- 326 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-- 326 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence 33444455555554 556666666666655543 344555555555554 56666666666655543
Q ss_pred CcHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCH
Q 006071 482 PASSLFRSVMESLFEDG---RVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSVPNF 554 (662)
Q Consensus 482 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~ 554 (662)
+...+..+...+...| ++++|+++|++..+.+ +...+..+...|.. .+++++|++.+++..+.+.....
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~ 402 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQ 402 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 2233444444444434 5556666666655542 34455555555555 55666666666655554321112
Q ss_pred HHHHHHHhc----cCCHHHHHHHHHHHhcCC
Q 006071 555 DSLLSVLSE----KGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 555 ~~~~~~~~~----~g~~~~A~~~~~~~~~~~ 581 (662)
..+...|.. .+++++|..+++++++.+
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 334444443 456666666666655554
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.8e-16 Score=161.40 Aligned_cols=220 Identities=11% Similarity=0.007 Sum_probs=116.1
Q ss_pred CHHhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCH
Q 006071 125 SVKSYDALFKLILR----RGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL----SLKLETAIRFFEDMKSRGISLDV 196 (662)
Q Consensus 125 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 196 (662)
++..+..+...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|..+|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555555555555 566666666666665543 34444455555555 556666666666665543 44
Q ss_pred HHHHHHHHHHhh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHH
Q 006071 197 VTYNTMINGYNR----FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA----VERADDALRIFDEMKSFDVKPNAVT 268 (662)
Q Consensus 197 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (662)
..+..|...|.. .+++++|...|+.....| +...+..|...|.. .+++++|+..|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 445555555555 556666666666655543 44555555555554 455666666666555543 4445
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhH
Q 006071 269 YTALLPGLCD----AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK----SGHLNAAADVLKAMIRLSIPTEAGHY 340 (662)
Q Consensus 269 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (662)
+..+...|.. .+++++|..+|++..+.+ +......+...|.. .+++++|...|+...+.+ +...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 5555555554 555666666666555532 34445555555543 455555555555554432 23333
Q ss_pred HHHHHHHHc----CCcHHHHHHHHHHH
Q 006071 341 GILIENFCK----AEMYDRAIKLLDKL 363 (662)
Q Consensus 341 ~~l~~~~~~----~~~~~~a~~~~~~~ 363 (662)
..+...|.. .+++++|+..|+..
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 334444433 44444444444444
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.4e-18 Score=167.68 Aligned_cols=299 Identities=10% Similarity=0.026 Sum_probs=210.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006071 160 TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIK 239 (662)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 239 (662)
+...+..+...+...|++++|..+++++.+... .+...+..++.++...|++++|..+++++.... +.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 444455555566666666666666666665532 244455555566666677777777776666542 335556666677
Q ss_pred HHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCh
Q 006071 240 GYVAVE-RADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL 318 (662)
Q Consensus 240 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (662)
.+...| ++++|...|+++.... +.+...+..+...+...|++++|...++++.+. .|.+...+..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhH
Confidence 777777 6777777777766543 334566777777777777777777777777765 344566667777778888888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhH
Q 006071 319 NAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGK 398 (662)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (662)
+.|...++.+.+.. +.+...+..+...+...|++++|...++++++...........+.....+..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888877754 55667788888888888888888888888876542211111223345678888889999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH-HhcCCh
Q 006071 399 AEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY-LRKGEP 465 (662)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 465 (662)
|...++.+.+..+.+..++..+..++...|++++|...++.+.+.. +.+...+..+..++ ...|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 9999999998888888899999999999999999999999888764 33677777777777 344544
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.1e-18 Score=168.24 Aligned_cols=291 Identities=14% Similarity=0.019 Sum_probs=225.5
Q ss_pred CCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 006071 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (662)
Q Consensus 334 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (662)
+.+...+..+...+...|++++|+.+|+++++.. | .+...+..++.++...|++++|..+++++.+..+.+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD----P-----FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-----TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C-----CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 5566677777888888888888888888887653 2 234456667777888888999999998888888888
Q ss_pred HHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 006071 414 PVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVME 492 (662)
Q Consensus 414 ~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 492 (662)
+.++..+...+...| ++++|...++.+.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 167 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGL 167 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 888888888888888 8899999998888764 3356778888888999999999999999888754 233556667888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----C---CCC----HHHHHHHH
Q 006071 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG----S---VPN----FDSLLSVL 561 (662)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---~p~----~~~~~~~~ 561 (662)
.+...|++++|...++++.+..+. +...+..++..+...|++++|+..++++.+.. . .|. +..++.++
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 888899999999999998887655 67788888999999999999999988887621 0 022 34567778
Q ss_pred hccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHH-HhcCCcc
Q 006071 562 SEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGL-NQEGNTK 638 (662)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 638 (662)
...|++++|...++++++..+. +...+..++.++.+.|++++|.+.+++.+... +.+...+..+..++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 8889999999999998887543 45667789999999999999999999988764 34566677777777 5555543
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.9e-18 Score=169.49 Aligned_cols=289 Identities=13% Similarity=0.082 Sum_probs=226.5
Q ss_pred HHcCCcHHHHHH-HHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 347 FCKAEMYDRAIK-LLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 347 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
+...|++++|+. .+++.+... +. ....+...+..+...+...|++++|...|+.+.+..+.+..++..++.++.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~----~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFE----EE-NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109 (368)
T ss_dssp -----------CHHHHCCCCCC----SS-CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcC----CC-CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344578888888 777654321 11 112245678889999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHH---------------H
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRS---------------V 490 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l 490 (662)
..|++++|...++.+.+.. +.+..++..++.++...|++++|...++++.+.... +...+.. .
T Consensus 110 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 110 ENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CT
T ss_pred HCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHH
Confidence 9999999999999998865 347889999999999999999999999999975422 2222211 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccC
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKG 565 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g 565 (662)
+..+...|++++|...++++.+..+.. +...+..++.++...|++++|+..++++... .|+ +..++.++...|
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcC
Confidence 334448899999999999999885543 5788899999999999999999999999873 344 345677888999
Q ss_pred CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------cHhhHHHHHHHHHhcC
Q 006071 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT----------DWKSSDKLIAGLNQEG 635 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g 635 (662)
++++|+..++++++..+ .....+..++.++.+.|++++|.+.+++++...... ....|..+..+|...|
T Consensus 266 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 266 QSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 99999999999998753 456777889999999999999999999988753221 2677889999999999
Q ss_pred CcchhHHHHH
Q 006071 636 NTKQADILSR 645 (662)
Q Consensus 636 ~~~~a~~~~~ 645 (662)
++++|..+.+
T Consensus 345 ~~~~A~~~~~ 354 (368)
T 1fch_A 345 QSDAYGAADA 354 (368)
T ss_dssp CGGGHHHHHT
T ss_pred ChHhHHHhHH
Confidence 9999976654
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=4e-18 Score=167.13 Aligned_cols=267 Identities=10% Similarity=-0.006 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006071 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF 172 (662)
Q Consensus 93 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 172 (662)
.+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444445555555555555555554432 2344444555555555555555555555554432 223444444455555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHhhcCChHHHHHHHHHHHHCCCC-CCHhhHHH
Q 006071 173 LSLKLETAIRFFEDMKSRGISLDVVTYNT---------------MINGYNRFKKMDEAEKLFAEMKEKNIE-PTVISYTT 236 (662)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 236 (662)
..|++++|...++.+...... +...+.. .+..+...|++++|...|+.+...... ++..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 555555555555555443211 1111110 122233667777777777777654211 13566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 006071 237 MIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG 316 (662)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (662)
+...+...|++++|+..|+++.... +.+..++..+..++...|++++|...++++... .|.+..++..+..++...|
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCC
Confidence 7777777777777777777776542 345667777777777777777777777777764 4556777777777777777
Q ss_pred ChHHHHHHHHHHHhCCCC----------CChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 006071 317 HLNAAADVLKAMIRLSIP----------TEAGHYGILIENFCKAEMYDRAIKLLDKLVE 365 (662)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 365 (662)
++++|...|+.+...... ....+|..+..+|...|++++|..++...++
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 777777777776653211 1156777778888888888887777664443
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.7e-16 Score=159.77 Aligned_cols=385 Identities=11% Similarity=-0.014 Sum_probs=187.8
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHC--------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C
Q 006071 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEK--------NIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF-----D 261 (662)
Q Consensus 195 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 261 (662)
....|+.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++.... +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456677777777777777777777665431 01123445666666677777777776666665421 0
Q ss_pred --CCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH---hcCChHHHHHHHHHHHhCCCC
Q 006071 262 --VKPNAVTYTALLPGLCD--AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQC---KSGHLNAAADVLKAMIRLSIP 334 (662)
Q Consensus 262 --~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~ 334 (662)
......++.....++.. .+++++|+..|++.++. .|.++..+..+..++. ..++.+.|+..+++..+.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 01123344444433333 33566666666666653 4545555554444422 3344555555555555432 3
Q ss_pred CChhhHHHHHHHHHcC----CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 006071 335 TEAGHYGILIENFCKA----EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (662)
Q Consensus 335 ~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (662)
.+...+..+...+... +++++|...+++..... +.+...+..+...+...|++++|...++++.+..
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 3334444443333332 33444555555443322 1123334444455555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHH
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 490 (662)
|.+..++..+..+|...+... .... ... ........+.++.|...+++..+.. +.+...+..+
T Consensus 278 p~~~~~~~~lg~~y~~~~~~~---------~~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 340 (472)
T 4g1t_A 278 PNNAYLHCQIGCCYRAKVFQV---------MNLR-ENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSIL 340 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHh---------hhHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhH
Confidence 555555544444432211000 0000 000 0000011123466777777766543 2334556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCH
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENLD--LVAKILE-ALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKT 567 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~ 567 (662)
...+...|++++|+..|+++++..+.+... .+..+.. .+...|++++|++.+++.++ +.|+.... .+..
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~------~~~~ 412 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREK------EKMK 412 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHH------HHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHH------HHHH
Confidence 777788888888888888877765443221 1222222 23466778888888877776 45543211 1223
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
..+..++++++... +.++..|..++.+|...|++++|++.+++.++.+.
T Consensus 413 ~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 413 DKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34555666666654 33455666788888888888888888888776543
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=3e-17 Score=155.79 Aligned_cols=289 Identities=13% Similarity=0.134 Sum_probs=129.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006071 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (662)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 107 (662)
.++...|+.++|.++++.+. ++.+|+.++.++.+.|++.+|++.|.+. +|...|..++..+...|++
T Consensus 11 ~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCH
Confidence 35557788999999998872 2359999999999999999999999653 4777899999999999999
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 187 (662)
++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999988877763 4567788899999999999999887774 367779999999999999999999999876
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 006071 188 KSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV 267 (662)
Q Consensus 188 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (662)
..|..++.++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+. ..+.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHh
Confidence 37889999999999999999999988 278999999999999999999966554422 3334
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCC------Chhh
Q 006071 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKS--GHLNAAADVLKAMIRLSIPT------EAGH 339 (662)
Q Consensus 268 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~ 339 (662)
....++..|.+.|.++++..+++..+.. .+....+|+.+.-.|++- ++..+.++.|.. +.++++ +...
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 4556888899999999999999988754 555777888887777754 334444444432 122333 4556
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHH
Q 006071 340 YGILIENFCKAEMYDRAIKLLDK 362 (662)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~ 362 (662)
|.-++..|.+.++++.|....-+
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHHHh
Confidence 77777777788888877765443
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=2e-17 Score=161.81 Aligned_cols=262 Identities=14% Similarity=0.093 Sum_probs=216.5
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (662)
+...+..+...+...|++++|...|+.+.+..|.+..++..++.++...|++++|...|+.+.+.. +.+..+|..++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455688889999999999999999999999999999999999999999999999999999998864 3468899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcH-HhH----------HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPAS-SLF----------RSVMESLFEDGRVQTASRVMKSMVEKGVK-ENLDLVAKIL 526 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 526 (662)
|...|++++|...++++.+.. |+. ..+ ..+...+...|++++|...++++++..+. ++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998753 332 222 23467888999999999999999998654 2688899999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCH
Q 006071 527 EALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKT 602 (662)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 602 (662)
.+|...|++++|++.++++++ ..|+ +..++.++...|++++|+..++++++..+ .+...+..++.+|.+.|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 999999999999999999987 3444 34577788899999999999999999853 3467788899999999999
Q ss_pred HHHHHHHHHHHHcCCC-----------CcHhhHHHHHHHHHhcCCcchhHHHHHH
Q 006071 603 LNAYSILFKIMEKGGV-----------TDWKSSDKLIAGLNQEGNTKQADILSRM 646 (662)
Q Consensus 603 ~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (662)
++|++.+++++..... .....|..|..++...|+.+.|..+.+.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998864321 1356778899999999999988655443
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=1.7e-17 Score=162.45 Aligned_cols=235 Identities=12% Similarity=0.027 Sum_probs=131.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 006071 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLL 309 (662)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (662)
+...+..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...|+++... .|.+..++..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 34457777777778888888888887777653 446677777777777888888888888877775 455677777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChh----------hHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCc
Q 006071 310 GVQCKSGHLNAAADVLKAMIRLSIPTEAG----------HYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME 379 (662)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 379 (662)
.++...|++++|...++++.+.. +.+.. .+..+...+...|++++|+..++++++.. +. .++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~---~~~ 212 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN----GD---MID 212 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHS----CS---SCC
T ss_pred HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC----cC---ccC
Confidence 77777788888887777776642 11111 12223445555555555555555554432 11 012
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
..++..+...+...|++++|...|+++.+..+.++.++..++.+|...|++++|...++.+.+.. +.+..++..+..+|
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Confidence 33444444455555555555555555555444444455555555555555555555555444432 11344444444444
Q ss_pred HhcCChHHHHHHHHHHH
Q 006071 460 LRKGEPADAKTALDSMI 476 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~ 476 (662)
...|++++|...++++.
T Consensus 292 ~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 292 INLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHTCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 44444444444444444
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.6e-15 Score=154.06 Aligned_cols=345 Identities=12% Similarity=0.017 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCC
Q 006071 302 NSVFMKLLGVQCKSGHLNAAADVLKAMIRL--------SIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (662)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (662)
...|+.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...++++.+........
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666666666666666655331 113345677888888888899999888888877654321111
Q ss_pred CCCCCccccHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH---HhcCChhHHHHHHHHHhhCCCCCC
Q 006071 374 STLDMEASSYNPMIQHLCH--NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH---SKEGNPDSAFEIVKIMGRRGVPRD 448 (662)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 448 (662)
.......++.....++.. .+++++|...|+++.+..|.++..+..+..++ ...++.++|++.++...+.+ +.+
T Consensus 131 -~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 -YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp -SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred -cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 111122345555545544 45789999999999999998998888777664 45678889999999888764 336
Q ss_pred HHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006071 449 ADAYICLIESYLR----KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAK 524 (662)
Q Consensus 449 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 524 (662)
...+..+...+.. .|++++|...+++..... +.+...+..+...+...|++++|...++++.+..+. +...+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 6667666655554 467789999999988754 345677888899999999999999999999988766 6677777
Q ss_pred HHHHHHhC-------------------CCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHhccCCHHHHHHHHHHHhcCCCC
Q 006071 525 ILEALLMR-------------------GHVEEALGRIDLMMQS-GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (662)
Q Consensus 525 l~~~~~~~-------------------g~~~~A~~~~~~~~~~-~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (662)
+..+|... +.+++|+..+++..+. +..+. ...++..+...|++++|+.+|+++++..+.
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 77666432 2357788888887762 22222 556888889999999999999999987655
Q ss_pred CCh--hhHHHHHHH-HHhcCCHHHHHHHHHHHHHcC-----------------------CCCcHhhHHHHHHHHHhcCCc
Q 006071 584 IDL--ASYEKVLDA-LLAAGKTLNAYSILFKIMEKG-----------------------GVTDWKSSDKLIAGLNQEGNT 637 (662)
Q Consensus 584 ~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~ 637 (662)
+.. ..+..++.. +...|++++|++.+++.+... .+.+..++..|+.+|...|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKM 446 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 432 233344443 457899999999999877543 234566788899999999999
Q ss_pred chhHHHHHHhhhh
Q 006071 638 KQADILSRMIRGE 650 (662)
Q Consensus 638 ~~a~~~~~~~~~~ 650 (662)
++|....++....
T Consensus 447 ~~A~~~y~kALe~ 459 (472)
T 4g1t_A 447 QQADEDSERGLES 459 (472)
T ss_dssp C------------
T ss_pred HHHHHHHHHHHhc
Confidence 9996665554443
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=3.7e-17 Score=155.17 Aligned_cols=288 Identities=14% Similarity=0.153 Sum_probs=132.2
Q ss_pred HhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHH
Q 006071 67 GRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAK 146 (662)
Q Consensus 67 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 146 (662)
-+.|+.++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 36788999999999983 3359999999999999999999999753 67779999999999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCC
Q 006071 147 RYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN 226 (662)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 226 (662)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 987777663 4567788999999999999999998884 367789999999999999999999999976
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHH
Q 006071 227 IEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFM 306 (662)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 306 (662)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. . .+....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~-~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----V-HADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----T-CHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----h-CHhhHH
Confidence 47999999999999999999999988 278999999999999999999966555422 1 444456
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC--CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHH
Q 006071 307 KLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA--EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYN 384 (662)
Q Consensus 307 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (662)
.++..|.+.|.+++|..+++...... +.....|.-+..+|++- ++..+.++.|..-+....+.+. .-+...|.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~----~~~~~~w~ 286 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA----AEQAHLWA 286 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH----HHTTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHH
Confidence 78899999999999999999998765 56677788887777764 3455555555432111100000 01345677
Q ss_pred HHHHHHHhcCChhHHHH
Q 006071 385 PMIQHLCHNGQTGKAEI 401 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~ 401 (662)
.+...|...++++.|..
T Consensus 287 e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhchHHHHHH
Confidence 77777777777777654
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.1e-16 Score=154.14 Aligned_cols=261 Identities=10% Similarity=0.024 Sum_probs=218.2
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (662)
+...+......+...|++++|..+|+++.+..+.+..++..+..++...|++++|...++.+.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 455677888899999999999999999999999999999999999999999999999999998864 3478899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCc-HHhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPA-SSLFRSV--------------ME-SLFEDGRVQTASRVMKSMVEKGVKENLDLV 522 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 522 (662)
+...|++++|...++++.+.. |+ ...+..+ .. .+...|++++|...++++.+..+. +...+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 999999999999999999753 33 2233222 22 377889999999999999988665 78889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh
Q 006071 523 AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598 (662)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 598 (662)
..++.++...|++++|++.++++.+. .|+ +..++..+...|++++|...++++++..+ .+...+..++.++..
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 99999999999999999999999873 343 34567788899999999999999998763 356677789999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-----------cHhhHHHHHHHHHhcCCcchhHHHHHH
Q 006071 599 AGKTLNAYSILFKIMEKGGVT-----------DWKSSDKLIAGLNQEGNTKQADILSRM 646 (662)
Q Consensus 599 ~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (662)
.|++++|.+.++++....... ....+..+..++...|++++|..+.+.
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999988764432 466788899999999999999665443
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.8e-16 Score=152.45 Aligned_cols=278 Identities=12% Similarity=0.020 Sum_probs=181.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 006071 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGV 311 (662)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (662)
..+..+...+...|++++|..+|+++.... +.+..++..+..++...|++++|...++++.+. .|.+..++..++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHH
Confidence 344555566666666666666666665542 334555555666666666666666666666554 34455555555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHH-HH-H
Q 006071 312 QCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPM-IQ-H 389 (662)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-~ 389 (662)
+...|+++.|...++.+.... +.+...+..+.... |+......+ .. .
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~ 147 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------------------VDIDDLNVQSEDFF 147 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------------------CC
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------------------HHHHHHHHHHHhHH
Confidence 666666666666665555432 11111111110000 000011111 11 2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006071 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAK 469 (662)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 469 (662)
+...|++++|...++.+.+..+.+..++..++..+...|++++|...++.+.+.. +.+..++..+...+...|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 5667888999999999988888888889999999999999999999998888754 336788888888888999999999
Q ss_pred HHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhCCCHHHH
Q 006071 470 TALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-----------NLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A 538 (662)
..++++.+.. +.+...+..+...+...|++++|...++++.+..+.. +...+..+..++...|++++|
T Consensus 227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 9998888653 2346677788888888889999988888887764442 456777788888888888888
Q ss_pred HHHHHHH
Q 006071 539 LGRIDLM 545 (662)
Q Consensus 539 ~~~~~~~ 545 (662)
..++++.
T Consensus 306 ~~~~~~~ 312 (327)
T 3cv0_A 306 ELTYAQN 312 (327)
T ss_dssp HHHTTCC
T ss_pred HHHHHHH
Confidence 8776643
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=3.6e-16 Score=146.09 Aligned_cols=249 Identities=12% Similarity=0.134 Sum_probs=156.5
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 006071 207 NRFKKMDEAEKLFAEMKEKNIEPTV--ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVE 284 (662)
Q Consensus 207 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 284 (662)
...|++..|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 4456666666666554432 2222 23445566666777776666544331 24555566666666667777777
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHH
Q 006071 285 VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLV 364 (662)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 364 (662)
|++.++++...+..|.+...+..+...+...|++++|...++. +.+...+..++..|.+.|++++|...++.++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777766555565666666666777777777777776665 4556666667777777777777777777775
Q ss_pred HhhhhccCCCCCCCccccH---HHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 006071 365 EKEIILRPQSTLDMEASSY---NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG 441 (662)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 441 (662)
+.. |+.... ...+..+...|++++|..+|+++.+..|.++.+++.+..++...|++++|...++++.
T Consensus 158 ~~~----------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 158 DQD----------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHC----------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhC----------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432 222111 1122233344677777777777777777777777777777777777777777777776
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChHH-HHHHHHHHHHc
Q 006071 442 RRGVPRDADAYICLIESYLRKGEPAD-AKTALDSMIED 478 (662)
Q Consensus 442 ~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 478 (662)
+.. +.++.++..++..+...|+.++ +..+++++.+.
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 653 2366677777777777777754 45677776653
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=2.1e-16 Score=147.65 Aligned_cols=274 Identities=13% Similarity=0.066 Sum_probs=162.6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHH
Q 006071 276 LCDAGKMVEVQKVLREMVERYIPPKD-NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYD 354 (662)
Q Consensus 276 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 354 (662)
....|++..|+..++..... .|.+ ......+.++|...|+++.|...++. .-+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456666666665544321 2312 12334455666666666666654433 12445555666666666666666
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCC-ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHH
Q 006071 355 RAIKLLDKLVEKEIILRPQSTLDM-EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSA 433 (662)
Q Consensus 355 ~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 433 (662)
+|++.+++++... ..| +...+..+...+...|++++|+..+++ +.++.++..++..+.+.|++++|
T Consensus 83 ~A~~~l~~ll~~~--------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 83 AIVAELDREMSRS--------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HHHHHHHHHHHSC--------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcc--------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHH
Confidence 6666666664321 112 233344455566666777777666665 45666777777777777777777
Q ss_pred HHHHHHHhhCCCCCCHH-h--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 434 FEIVKIMGRRGVPRDAD-A--YICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (662)
Q Consensus 434 ~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (662)
...++.+.+.. |+.. . ...++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...++++
T Consensus 150 ~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 150 RKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777776643 3321 1 112233344456777777777777764 3345666677777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHH
Q 006071 511 VEKGVKENLDLVAKILEALLMRGHVEE-ALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLL 574 (662)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~ 574 (662)
++..+. +..++..++.++...|+.++ +.++++++.+ ..|+...+.+...+.+.++++..-|
T Consensus 227 l~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 227 LDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHHHHHHc
Confidence 776555 66667777777777777654 4567777766 5666555666555555555555443
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=2.8e-15 Score=149.83 Aligned_cols=378 Identities=10% Similarity=0.074 Sum_probs=216.5
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006071 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA---DDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 278 (662)
+...+.+.|++++|.+.|+...+.| +...+..|...|...|+. ++|..+|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4455566777777777777776654 344445555556666666 7777777777643 44445555554444
Q ss_pred CC-----CHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 006071 279 AG-----KMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLN---AAADVLKAMIRLSIPTEAGHYGILIENFCKA 350 (662)
Q Consensus 279 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (662)
.+ ++++|..+|++..+.+ +...+..+...|...+..+ .+...+......+ ++.....+...|...
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 43 6677888887777754 3335666666666554332 3444444444433 344556666667666
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 006071 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG---QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE 427 (662)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (662)
+.++.+......+.+.. .. .++..+..+...|...| +.++|...|++..+.++++...+..+..+|...
T Consensus 155 ~~~~~~~~~a~~~~~~a----~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAA----LN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA 226 (452)
T ss_dssp TCGGGGHHHHHHHHHHH----TT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG
T ss_pred CCcccCHHHHHHHHHHH----Hc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 64443333322222111 11 22336777777777788 888888888888888888887777777777654
Q ss_pred ----CChhHHHHHHHHHhhCCCCCCHHhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcC--
Q 006071 428 ----GNPDSAFEIVKIMGRRGVPRDADAYICLIES-Y--LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG-- 498 (662)
Q Consensus 428 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 498 (662)
+++++|..+|+... .| ++..+..+... + ...+++++|...|++..+.| +......+...|. .|
T Consensus 227 ~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 68888888888877 32 55566666665 3 45778888888888888765 4455555555555 45
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhc----cCCH
Q 006071 499 ---RVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKT 567 (662)
Q Consensus 499 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~ 567 (662)
++++|..+|++.. .-+...+..+...|.. ..++++|+..+++..+.|.......+...|.. ..+.
T Consensus 299 ~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp SCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCH
T ss_pred CCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCH
Confidence 8888888888876 2255666667776665 33788888888887776654445556655542 4578
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
++|..+++++.+.+........ ..+......++..+|..+.++...
T Consensus 375 ~~A~~~~~~A~~~g~~~a~~~l-~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDTPEANDLA-TQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8888888888777632211111 111111223455566666665444
No 36
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.68 E-value=2.4e-12 Score=132.64 Aligned_cols=451 Identities=12% Similarity=0.104 Sum_probs=289.6
Q ss_pred ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC---hHHHHH
Q 006071 141 RYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK---MDEAEK 217 (662)
Q Consensus 141 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~ 217 (662)
...+.+..|+..+..+ +-|..+|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.++ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555566665554 358888888888888888888888888888876 55577888888888888888 888888
Q ss_pred HHHHHHHCC-CCCCHhhHHHHHHHHHhcCCH--------HHHHHHHHHHhh-CCC-CC-CHHHHHHHHHHHHh-------
Q 006071 218 LFAEMKEKN-IEPTVISYTTMIKGYVAVERA--------DDALRIFDEMKS-FDV-KP-NAVTYTALLPGLCD------- 278 (662)
Q Consensus 218 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~------- 278 (662)
+|++..... .+|++..|...+....+.++. +.+.++|+.... .|. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 888887652 137777887777665555442 334466666543 454 34 34566666654432
Q ss_pred --CCCHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHH
Q 006071 279 --AGKMVEVQKVLREMVERYIPPKD-NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDR 355 (662)
Q Consensus 279 --~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 355 (662)
.++++.+..+|++++.. +..+ ..+|......-...+. ..+.. ++.- ...+++.
T Consensus 205 eeq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~-~~a~~-------------------~~~e--~~~~y~~ 260 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQ-LTARR-------------------HIGE--LSAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCT-TTHHH-------------------HHHH--HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCc-chHHH-------------------HHHH--hhHHHHH
Confidence 23456677777777642 2111 1222221111110000 00111 1111 1123444
Q ss_pred HHHHHHHHHHhhhhcc---CC-------CCCCC-c------cccHHHHHHHHHhcC-------ChhHHHHHHHHHHhcCC
Q 006071 356 AIKLLDKLVEKEIILR---PQ-------STLDM-E------ASSYNPMIQHLCHNG-------QTGKAEIFFRQLMKKGV 411 (662)
Q Consensus 356 a~~~~~~~~~~~~~~~---~~-------~~~~~-~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~ 411 (662)
|...+..+........ +. ..+++ + ...|...+.--...+ ..+.+..+|++++...+
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p 340 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC 340 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC
Confidence 5555544332211100 00 00010 0 123444444333322 12345678999999889
Q ss_pred CCHHHHHHHHHHHHhcCChhHHH-HHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------C
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAF-EIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH---------S 481 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~ 481 (662)
.++..|...+..+...|+.++|. .+|+..... .+.+...|..++....+.|+++.|..+|+++++... .
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999999997 999999874 345777788889999999999999999999986310 1
Q ss_pred C------------cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHh-
Q 006071 482 P------------ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG-HVEEALGRIDLMMQ- 547 (662)
Q Consensus 482 ~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~- 547 (662)
| ...+|...+....+.|..+.|..+|..+++..+......|...+..-.+.| +++.|.++|+..++
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3 123677778878888999999999999988622223445544444444554 58999999998887
Q ss_pred CCCCCCH-HHHHHHHhccCCHHHHHHHHHHHhcCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006071 548 SGSVPNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV 618 (662)
Q Consensus 548 ~~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 618 (662)
.+..|.+ ..++..+...|+.+.|+.+|++++...+++ ....|...+..-.+.|..+.+.++.+++.+.-+.
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3333332 345555667899999999999999986532 2456666667677899999999999999987543
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=1.1e-14 Score=145.57 Aligned_cols=308 Identities=11% Similarity=0.043 Sum_probs=169.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCCh---HHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKL---NHARCILLDMPKKGVQWDEDMFEVLIES 100 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (662)
..+...+.+.|++++|++.|+.+.+.+ ++.++..+..++...|+. ++|..+|++..+. ++..+..+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 456777888899999999999988765 445566677777777877 8899999888764 55566666665
Q ss_pred HHhcC-----ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhH---HHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006071 101 YGKKG-----IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMM---AKRYFNKMLSEGIEPTRHTYNVMLWGFF 172 (662)
Q Consensus 101 ~~~~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 172 (662)
+...| ++++|...|++..+.|. +..+..|...|...+..++ +.+.+......| +......+...|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 55554 67889999988888653 2366677777776554333 444444444333 2334445555565
Q ss_pred hcCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-
Q 006071 173 LSLKLETA----IRFFEDMKSRGISLDVVTYNTMINGYNRFK---KMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAV- 244 (662)
Q Consensus 173 ~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 244 (662)
..+.++.+ ..++...... +...+..|..+|...| +.++|...|+.....| +++...+..|...|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred cCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 55544333 3333333322 2236666666777777 7777777777777665 33444445566665444
Q ss_pred ---CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-H--HhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC--
Q 006071 245 ---ERADDALRIFDEMKSFDVKPNAVTYTALLPG-L--CDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG-- 316 (662)
Q Consensus 245 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 316 (662)
+++++|+.+|+... . -+...+..+... + ...+++++|..+|++..+.| +......+..+|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCC
Confidence 57777777777766 2 234444455444 3 34667777777777766643 5556666666665 44
Q ss_pred ---ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCcHHHHHHHHHHH
Q 006071 317 ---HLNAAADVLKAMIRLSIPTEAGHYGILIENFCK----AEMYDRAIKLLDKL 363 (662)
Q Consensus 317 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 363 (662)
++++|...|+... +.++.....+...|.. ..++++|...|+..
T Consensus 299 ~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp SCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 6666666666655 2344455555555544 22556666666555
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=6.1e-15 Score=131.52 Aligned_cols=189 Identities=22% Similarity=0.215 Sum_probs=81.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (662)
.+..+...+...|++++|...|+++.+..|.++.++..+..++...|++++|...++...+.+ +.+...+..+..++..
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444432 1133444444444444
Q ss_pred c-----------CChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 462 K-----------GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 462 ~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
. |++++|+..+++.++.. +-+...+..+...+...|++++|+..|+++++.+ .+...+..+..+|.
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 4 55555555555554432 1123344444445555555555555555555544 34444555555555
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHH
Q 006071 531 MRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDF 576 (662)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~ 576 (662)
..|++++|+..+++.++ ..|+ ...++.++...|++++|+..+++
T Consensus 163 ~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC-------------
T ss_pred HcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555544 2222 12233444455555555555543
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=163.22 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=90.8
Q ss_pred CHHhHHHHHHHHHHcCChhHHHHHHHHHHh---CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006071 125 SVKSYDALFKLILRRGRYMMAKRYFNKMLS---EGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNT 201 (662)
Q Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (662)
...+|+++|.+|++.|+.++|.++|.+|.+ .|+.||..|||++|.+|++.|++++|.++|++|...|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877653 36778888888888888888888888888888888888888888888
Q ss_pred HHHHHhhcCCh-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006071 202 MINGYNRFKKM-DEAEKLFAEMKEKNIEPTVISYTTMIKGYVA 243 (662)
Q Consensus 202 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (662)
+|.++++.|+. ++|.++|++|...|+.||..+|+.++..+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 88888887764 6777888888888888888888877755433
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3e-14 Score=131.60 Aligned_cols=226 Identities=12% Similarity=0.026 Sum_probs=144.6
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--cC----HHhH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVE--RS----VKSY 129 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~----~~~~ 129 (662)
...+..+...+...|++++|..+|+++.+.. .+..++..+...+...|++++|...|+.+.+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4566677777777777777777777777665 46677777777777777777777777776654211 11 4666
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 006071 130 DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF 209 (662)
Q Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 209 (662)
..+...+...|++++|...|++..... |+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 777777777777777777777776642 332 23444566677777777766652 12445566666666667
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 210 KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL 289 (662)
Q Consensus 210 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 289 (662)
|++++|...|+...... +.+..++..+...+...|++++|...|+.+.... +.+..++..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777777776666542 3345566666666666666666666666665542 334556666666666666666666666
Q ss_pred HHHHHc
Q 006071 290 REMVER 295 (662)
Q Consensus 290 ~~~~~~ 295 (662)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666553
No 41
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=161.85 Aligned_cols=150 Identities=12% Similarity=0.109 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 006071 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQ---LGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM 167 (662)
Q Consensus 91 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 167 (662)
..+|+++|.+|++.|++++|..+|+.|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC------HhhHHHHHHH
Q 006071 168 LWGFFLSLK-LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT------VISYTTMIKG 240 (662)
Q Consensus 168 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 240 (662)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+. .+++.++++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999998755443 333333333 2233433 4455556666
Q ss_pred HHhcC
Q 006071 241 YVAVE 245 (662)
Q Consensus 241 ~~~~~ 245 (662)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66655
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2e-14 Score=128.26 Aligned_cols=198 Identities=14% Similarity=0.045 Sum_probs=93.0
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
|+++..+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|...|++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 345555555555555556666666655555554332 45555555555555566666666555555543 2344455555
Q ss_pred HHHHHHc-----------CChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006071 133 FKLILRR-----------GRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNT 201 (662)
Q Consensus 133 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (662)
..++... |++++|+..|++.++..+ .+...+..+...+...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 5555555 555555555555544321 133444444444555555555555555554443 34444555
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDE 256 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 256 (662)
+..++...|++++|...|+...+.. +.+...+..+...+...|++++|+..|++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555555544431 22334444444555555555555544443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=4.3e-14 Score=136.38 Aligned_cols=246 Identities=9% Similarity=0.005 Sum_probs=202.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN-PDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
..|..+...+...|++++|+..+++++...|.+..+|+.+..++...|+ +++|+..|+++...+.. +...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4567777888899999999999999999999999999999999999997 99999999999987544 789999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CCCHHHH
Q 006071 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM-RGHVEEA 538 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A 538 (662)
...|++++|+..++++++.. +-+...|..+..++...|++++|+..++++++.++. +...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999999754 335788999999999999999999999999999877 78889999999999 6665777
Q ss_pred -----HHHHHHHHhCCCCCC----HHHHHHHHhccC--CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcC-------
Q 006071 539 -----LGRIDLMMQSGSVPN----FDSLLSVLSEKG--KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG------- 600 (662)
Q Consensus 539 -----~~~~~~~~~~~~~p~----~~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 600 (662)
++.+++.+. ..|+ +..+..++...| ++++|++.++++ +.. +.+...+..++++|.+.|
T Consensus 255 ~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 255 VLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccch
Confidence 588888887 5566 334566777777 689999999877 433 445677788999999874
Q ss_pred --CHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 006071 601 --KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (662)
Q Consensus 601 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (662)
..++|+++++++....++.....|..+...+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 358999999998333344344555555555443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=4.8e-14 Score=131.37 Aligned_cols=246 Identities=12% Similarity=0.055 Sum_probs=186.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--CHHhHHHHHHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR--DADAYICLIES 458 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 458 (662)
..+......+...|++++|...|+.+.+..|.++.++..+..++...|++++|...++.+.+....+ ....|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3456677788899999999999999999888888889999999999999999999999988842111 23448889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (662)
+...|++++|...+++..+.. +.+...+..+...+...|++++|+..++++++..+. +...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998753 234577888888999999999999999998877544 677777777344455699999
Q ss_pred HHHHHHHHhCCCCCCH----HHHHHHHhccCC---HHHHHHHHHHHhcCC---CCCC----hhhHHHHHHHHHhcCCHHH
Q 006071 539 LGRIDLMMQSGSVPNF----DSLLSVLSEKGK---TIAAVKLLDFCLGRD---CIID----LASYEKVLDALLAAGKTLN 604 (662)
Q Consensus 539 ~~~~~~~~~~~~~p~~----~~~~~~~~~~g~---~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~ 604 (662)
++.++++.+ ..|+. ..++.++...|+ +++|...++++++.. +.++ ...|..++..+...|++++
T Consensus 162 ~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999887 44442 234555556666 888999998888753 2211 2567778999999999999
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 006071 605 AYSILFKIMEKGGVTDWKSSDKLIAGL 631 (662)
Q Consensus 605 A~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (662)
|.+.+++++...+ .+......+....
T Consensus 240 A~~~~~~al~~~p-~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 240 ADAAWKNILALDP-TNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHC---
T ss_pred HHHHHHHHHhcCc-cHHHHHHHhhhhh
Confidence 9999999988753 3444444444333
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=1.8e-13 Score=127.48 Aligned_cols=224 Identities=9% Similarity=-0.048 Sum_probs=166.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHhHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGVPRDADAYICL 455 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 455 (662)
...+..+...+...|++++|...|++..+ +.++.++..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34566677777788888888888888877 4456677778888888 888888888888887764 67777788
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006071 456 IESYLR----KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE----DGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (662)
Q Consensus 456 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (662)
...|.. .+++++|...+++..+.+ +...+..+...|.. .|++++|...+++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 888888 888888888888887754 55666777777777 788888888888887765 4556666777
Q ss_pred HHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhc----cCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh-
Q 006071 528 ALLM----RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA- 598 (662)
Q Consensus 528 ~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 598 (662)
.|.. .+++++|+..+++..+.+.......+...+.. .+++++|+.+++++++.++ ...+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcC
Confidence 7777 77888888888887775432223456666666 7888888888888877643 4555667788887
Q ss_pred ---cCCHHHHHHHHHHHHHcCC
Q 006071 599 ---AGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 599 ---~g~~~~A~~~~~~~~~~~~ 617 (662)
.|++++|++.+++..+.+.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 7888888888888777653
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=9.6e-12 Score=128.15 Aligned_cols=452 Identities=9% Similarity=0.062 Sum_probs=271.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC---hhHHHH
Q 006071 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI---VQESVK 112 (662)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 112 (662)
..+-+..|+..+..+ |.+...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.|+ ++.+..
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 445666777777777 789999999999999999999999999999886 44578889999998888888 999999
Q ss_pred HHHHHHHcC-CCcCHHhHHHHHHHHHHcCCh--------hHHHHHHHHHHh-CCC-Cc-CHHHHHHHHHHHHh-------
Q 006071 113 IFDIMKQLG-VERSVKSYDALFKLILRRGRY--------MMAKRYFNKMLS-EGI-EP-TRHTYNVMLWGFFL------- 173 (662)
Q Consensus 113 ~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~------- 173 (662)
+|++..... .+|++..|...+....+.++. +...++|+..+. .|. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998753 138888998888777665553 334477777654 355 44 34677777765432
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 006071 174 --SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDAL 251 (662)
Q Consensus 174 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 251 (662)
.++++.+..+|+.++......-..+|......-...+. ..+.+++.+.. .+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~---------------------~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS---------------------AQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------------------HHHHHHH
Confidence 34567888999888864222112344332221111111 01111111110 0111122
Q ss_pred HHHHHHhh--CCC----C-----------C-----C---HHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCC
Q 006071 252 RIFDEMKS--FDV----K-----------P-----N---AVTYTALLPGLCDAG-------KMVEVQKVLREMVERYIPP 299 (662)
Q Consensus 252 ~~~~~~~~--~~~----~-----------~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~ 299 (662)
..+.++.. .++ + | + ...|...+..--..+ ..+.+..+|++++.. .|
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p 340 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VC 340 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cC
Confidence 22221100 000 0 0 0 122333333222211 123455666666664 44
Q ss_pred CcHHHHHHHHHHHHhcCChHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhh-------hcc
Q 006071 300 KDNSVFMKLLGVQCKSGHLNAAA-DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI-------ILR 371 (662)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~ 371 (662)
....+|...+..+...|+.+.|. .+|+..... +|.+...|...+...-+.|+++.|..+|+.+++... ...
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 46677777777777777776775 777776653 345555566666666677777777777777665310 000
Q ss_pred CC-----CCCC-CccccHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhhC
Q 006071 372 PQ-----STLD-MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK-GVLDPVAFNNLIRGHSKE-GNPDSAFEIVKIMGRR 443 (662)
Q Consensus 372 ~~-----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 443 (662)
|. .... .....|...+....+.|..+.|..+|.++.+. .......|...+..-.+. ++.+.|..+|+...+.
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 10 0000 01235667777777777788888888888776 433344454444443343 3478888888877765
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006071 444 GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK 516 (662)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 516 (662)
.+.+...|...+......|+.+.|..+|++.+.....+ ....|...+..-...|+.+.+..+.+++.+.-+.
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34466667777777777788888888888877643211 3456666666667778888888888888777554
No 47
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.9e-14 Score=128.72 Aligned_cols=222 Identities=11% Similarity=0.028 Sum_probs=97.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC----hhhHHH
Q 006071 269 YTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI--PTE----AGHYGI 342 (662)
Q Consensus 269 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 342 (662)
+..+...+...|++++|...++++.+.. .+..++..+..++...|+++.|...++.+.+... .++ ..++..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 3344444444444444444444444433 1344444444444444444444444444433210 001 234444
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (662)
+...|...|++++|+..|+++++.. |+ ...+...|++++|...++.+....+.+..++..+..
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~----------~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 147 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH----------RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----------CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC----------ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 5555555555555555555554321 11 122333344444555554444444444444444445
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHH
Q 006071 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQT 502 (662)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (662)
.+...|++++|...++.+.+.. +.+..+|..+..++...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHH
Confidence 5555555555555555444432 1134444444444444444444444444444322 1123334444444444444444
Q ss_pred HHHHHHHHHH
Q 006071 503 ASRVMKSMVE 512 (662)
Q Consensus 503 a~~~~~~~~~ 512 (662)
|...++++.+
T Consensus 226 A~~~~~~a~~ 235 (258)
T 3uq3_A 226 ALETLDAART 235 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=1.6e-13 Score=132.32 Aligned_cols=225 Identities=9% Similarity=0.054 Sum_probs=147.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 006071 25 LVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGK-LNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (662)
Q Consensus 25 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (662)
.+..++...|++++|+..|+.+++.+ |.+..+|..+..++...|+ +++|+..|++++...+. +..+|..+..++..
T Consensus 102 ~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 102 YFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 34446666777777777777777766 6677777777777777775 77777777777766544 66777777777777
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-cCCHHHH--
Q 006071 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL-SLKLETA-- 180 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a-- 180 (662)
.|++++|+..|+++.+.. +.+..+|..+..++...|++++|+..|+++++..+ .+...|+.+..++.. .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHH
Confidence 777777777777777654 35666777777777777777777777777776532 256666666666666 4444555
Q ss_pred ---HHHHHHHHhCCCCCCHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---------C
Q 006071 181 ---IRFFEDMKSRGISLDVVTYNTMINGYNRFK--KMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE---------R 246 (662)
Q Consensus 181 ---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~ 246 (662)
+..+++....... +...|+.+..++...| ++++|.+.+.++ +. .+.+...+..+...|.+.| .
T Consensus 257 ~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 257 EREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 3666666655322 5566666666666666 466666666665 22 2334556666666666543 2
Q ss_pred HHHHHHHHHHH
Q 006071 247 ADDALRIFDEM 257 (662)
Q Consensus 247 ~~~a~~~~~~~ 257 (662)
.++|+.+|+++
T Consensus 334 ~~~A~~~~~~l 344 (382)
T 2h6f_A 334 LNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36666666666
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=1.4e-13 Score=128.14 Aligned_cols=163 Identities=11% Similarity=0.036 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
|..+..++...|++++|...|+++.+..+.+..++..+..+|...|++++|...++...+.. +.+...|..+...+...
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444455555555555555555555555444432 22344444444122222
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhC
Q 006071 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKG-VKEN------LDLVAKILEALLMR 532 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~ 532 (662)
+++++|...++++.+.. +.+...+..+...+...|+ +++|...++++.+.. ..|+ ...|..+...|...
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 35555555555554422 1123333344444444444 444555555444331 1111 13344455555555
Q ss_pred CCHHHHHHHHHHHHh
Q 006071 533 GHVEEALGRIDLMMQ 547 (662)
Q Consensus 533 g~~~~A~~~~~~~~~ 547 (662)
|++++|++.++++.+
T Consensus 235 ~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 235 RDKVKADAAWKNILA 249 (272)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 555555555555554
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=6e-13 Score=123.87 Aligned_cols=228 Identities=12% Similarity=-0.059 Sum_probs=192.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHh
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KGEPADAKTALDSMIEDGHSPASSL 486 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 486 (662)
+.++.++..+...+...|++++|...|+...+. .+...+..+...|.. .+++++|...+++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 456788889999999999999999999999884 366788889999999 999999999999999865 6677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006071 487 FRSVMESLFE----DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSVPNFDSLL 558 (662)
Q Consensus 487 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 558 (662)
+..+...+.. .+++++|+..|++..+.+ +...+..+...|.. .|++++|++.+++..+.+.......+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 153 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8888888988 999999999999999875 67788889999999 999999999999999865222244566
Q ss_pred HHHhc----cCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 006071 559 SVLSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA----AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAG 630 (662)
Q Consensus 559 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 630 (662)
..+.. .+++++|+.+++++++.+ ++..+..++.+|.. .|++++|++.+++..+.+. ...+..+..+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHH
Confidence 67766 899999999999999874 35667789999999 9999999999999998853 5566778999
Q ss_pred HHh----cCCcchhHHHHHHhhhhccc
Q 006071 631 LNQ----EGNTKQADILSRMIRGEMSR 653 (662)
Q Consensus 631 ~~~----~g~~~~a~~~~~~~~~~~~~ 653 (662)
|.. .+++++|....++....++.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 998 99999997776666655543
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1.1e-13 Score=129.25 Aligned_cols=244 Identities=10% Similarity=-0.082 Sum_probs=193.7
Q ss_pred hcCChhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHH
Q 006071 392 HNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPAD 467 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 467 (662)
..|++++|...++.+.+.. +.++.++..++.++...|++++|...|+.+.+.. +.+...|..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 4578999999999999874 3456788999999999999999999999998864 3378999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 468 AKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +.. .......+...|++++|+..+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPF-RSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH-HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-ChH-HHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999999753 335678888999999999999999999999987654 332 23344445677999999999987776
Q ss_pred -CCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhh
Q 006071 548 -SGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID---LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKS 623 (662)
Q Consensus 548 -~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 623 (662)
.+..+....++..+...++.++|...+++++...+... ...+..++.++.+.|++++|.+.+++.+...+ .++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 251 (275)
T 1xnf_A 173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV-HNFVE 251 (275)
T ss_dssp HSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTCHH
T ss_pred cCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc-hhHHH
Confidence 33333344566677788889999999999988754321 46777899999999999999999999998753 24433
Q ss_pred HHHHHHHHHhcCCcchhHHH
Q 006071 624 SDKLIAGLNQEGNTKQADIL 643 (662)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~ 643 (662)
...++...|++++|...
T Consensus 252 ---~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 252 ---HRYALLELSLLGQDQDD 268 (275)
T ss_dssp ---HHHHHHHHHHHHHC---
T ss_pred ---HHHHHHHHHHHHhhHHH
Confidence 46677888888888533
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=4.7e-14 Score=131.68 Aligned_cols=219 Identities=17% Similarity=0.023 Sum_probs=96.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (662)
.+..+..++...|++++|...|+++....+.++.++..++.++...|++++|...++.+.+.. +.+...+..+..++..
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHH
Confidence 334444444444444444444444444444444455555555555555555555555544432 1134444555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006071 462 KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGR 541 (662)
Q Consensus 462 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 541 (662)
.|++++|...++++.+.. |+.......+..+...|++++|...++......+. +...+. ++..+...++.++|++.
T Consensus 124 ~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGWN-IVEFYLGNISEQTLMER 199 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHHH-HHHHHHHhcCHHHHHHH
Confidence 555555555555554422 22222222233334445555555555544443222 122222 33444444455555555
Q ss_pred HHHHHhCCCC--CC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006071 542 IDLMMQSGSV--PN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (662)
Q Consensus 542 ~~~~~~~~~~--p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
+++....... |+ +..++..+...|++++|...+++++...+.. +...+.++...|++++|++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN----FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT----CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh----HHHHHHHHHHHHHHHhhHHHH
Confidence 5544431110 00 1223444455556666666666555543211 112244555556666655554
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=3.2e-12 Score=117.38 Aligned_cols=198 Identities=11% Similarity=-0.013 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006071 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF 172 (662)
Q Consensus 93 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 172 (662)
.+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34444444445555555555555444432 2234444444555555555555555555544432 123344444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 006071 173 LSLKLETAIRFFEDMKSRGISL-DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDAL 251 (662)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 251 (662)
..|++++|..+++++...+..| +...+..+..++...|++++|...+++..... +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555544411122 23344444455555555555555555544432 223444445555555555555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 006071 252 RIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVE 294 (662)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 294 (662)
..++.+.... +.+...+..+...+...|++++|...++++.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555544432 23344444444445555555555555555544
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1.3e-12 Score=119.93 Aligned_cols=201 Identities=11% Similarity=0.040 Sum_probs=169.8
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (662)
+..+..++..+...|++++|...|+++.+..+. +..++..+...+...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 567888888999999999999999998876543 67888899999999999999999999988765 3577888889999
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHH
Q 006071 136 ILRRGRYMMAKRYFNKMLSEGIEP-TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDE 214 (662)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 214 (662)
+...|++++|...|+++...+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999997732233 456777888888899999999999999887643 368888899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006071 215 AEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF 260 (662)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (662)
|...++.+.... +.+...+..+...+...|++++|.+.++.+.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999988753 456778888889999999999999999998875
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.6e-13 Score=136.21 Aligned_cols=302 Identities=15% Similarity=0.046 Sum_probs=161.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCC
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE----AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTL 376 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 376 (662)
....+......+...|++++|...|+++.+.. +.+ ..++..+...|...|++++|...++++++.... .+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~ 82 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART----IGD 82 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh----ccc
Confidence 34445556666666666666666666666542 222 234555556666666666666666665443211 000
Q ss_pred CCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCHHh
Q 006071 377 DMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PRDADA 451 (662)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 451 (662)
. +....++..+...+...|++++|...++.+.+. +. .....+
T Consensus 83 ~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 83 Q---------------------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp H---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred c---------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 0 111233444444555555555555555444321 00 001234
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCCc-HHhHHHHHHHHHhcCCHHHHHHH
Q 006071 452 YICLIESYLRKGE--------------------PADAKTALDSMIED----GHSPA-SSLFRSVMESLFEDGRVQTASRV 506 (662)
Q Consensus 452 ~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 506 (662)
+..+...|...|+ +++|...+++..+. +..|. ..++..+...+...|++++|...
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 5555555555555 55555555554421 11111 23455555566666777777777
Q ss_pred HHHHHHcCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCCC-------HHHHHHHHhccCCHHHHHHH
Q 006071 507 MKSMVEKGVK-EN----LDLVAKILEALLMRGHVEEALGRIDLMMQS-GSVPN-------FDSLLSVLSEKGKTIAAVKL 573 (662)
Q Consensus 507 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-------~~~~~~~~~~~g~~~~A~~~ 573 (662)
++++.+.... ++ ...+..++.++...|++++|+..+++.... +..++ ...++..+...|++++|..+
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 6666544111 11 224556666777777777777777666541 11111 12345556667777777777
Q ss_pred HHHHhcCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----C-CcHhhHHHHHHHHHhcCCcchh
Q 006071 574 LDFCLGRDCIID-----LASYEKVLDALLAAGKTLNAYSILFKIMEKGG----V-TDWKSSDKLIAGLNQEGNTKQA 640 (662)
Q Consensus 574 ~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~a 640 (662)
++++++...... ...+..++.+|...|++++|.+.+++.+.... . .....+..+...+...|+...+
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 777665422111 44566788888888888888888888664311 1 1234555677778887776443
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=2.7e-12 Score=115.50 Aligned_cols=200 Identities=15% Similarity=0.095 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006071 267 VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIEN 346 (662)
Q Consensus 267 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (662)
..+..+...+...|++++|...++++.+. .|.+...+..++..+...|+++.|...++.+.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34444444555555555555555555443 23344455555555555555555555555554432 3344445555555
Q ss_pred HHcC-CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 347 FCKA-EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 347 ~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
+... |++++|...++.+++. + ..+.+...+..+..++...|++++|...++.+.+..+.++.++..+..++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-----~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-----P--TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM 158 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-----T--TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----c--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5555 5555555555555320 0 001112334444455555555555555555555555555555555555555
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 476 (662)
..|++++|...++.+.+.....+...+..+...+...|+.+++..+++.+.
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555555555555555543221244445555555555555555555555554
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=3.1e-12 Score=115.10 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006071 167 MLWGFFLSLKLETAIRFFEDMK 188 (662)
Q Consensus 167 ll~~~~~~~~~~~a~~~~~~~~ 188 (662)
+...+...|++++|...++.+.
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~ 35 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDAL 35 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333344444444433333
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=3.3e-13 Score=123.22 Aligned_cols=190 Identities=12% Similarity=0.081 Sum_probs=82.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
.+...|++++|+..|+.+.+.. |.+..++..++.++...|++++|...++++.+.... +..++..+...+...|+++
T Consensus 32 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp ----------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHhccHH
Confidence 4444455555555555554443 444455555555555555555555555554443221 3444444445555555555
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 188 (662)
+|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 109 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 109 EAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555544432 2334444444444445555555555554444331 1233344444444444444444444444444
Q ss_pred hCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 006071 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (662)
Q Consensus 189 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 224 (662)
+... .+..++..+..++...|++++|...++.+.+
T Consensus 187 ~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 187 EQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 3321 1334444444444444444444444444443
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=1.1e-13 Score=137.78 Aligned_cols=271 Identities=11% Similarity=0.041 Sum_probs=207.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC----C-CCCCHHhH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----G-VPRDADAY 452 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 452 (662)
.+..+...+...|++++|...|+.+.+..+.++ .++..+...|...|++++|...++++.+. + .+.....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344566678899999999999999999887766 47888999999999999999999887652 1 12234678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-cHHhHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 006071 453 ICLIESYLRKGEPADAKTALDSMIED----GHSP-ASSLFRSVMESLFEDGR-----------------VQTASRVMKSM 510 (662)
Q Consensus 453 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~ 510 (662)
..+...|...|++++|...++++.+. +-.+ ...++..+...+...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88999999999999999999988753 1112 24467778888999999 99999999987
Q ss_pred HHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHhccCCHHHHHHHHHHH
Q 006071 511 VEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLSVLSEKGKTIAAVKLLDFC 577 (662)
Q Consensus 511 ~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~ 577 (662)
.+. +..+ ....+..+..++...|++++|++.+++..+.. ..++ ...++..+...|++++|..+++++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 654 1111 23467788999999999999999999887621 1122 234667788899999999999988
Q ss_pred hcCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CcHhhHHHHHHHHHhcCCcchhHHHHHHh
Q 006071 578 LGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV-----TDWKSSDKLIAGLNQEGNTKQADILSRMI 647 (662)
Q Consensus 578 ~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 647 (662)
++..... ....+..++.++...|++++|.+.+++.+..... .....+..+..+|...|++++|....+..
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8754322 1456778999999999999999999998764211 12346677999999999999996666555
Q ss_pred hhhcc
Q 006071 648 RGEMS 652 (662)
Q Consensus 648 ~~~~~ 652 (662)
....+
T Consensus 370 l~~~~ 374 (411)
T 4a1s_A 370 LQLAX 374 (411)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 54433
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=6.2e-13 Score=121.43 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 006071 234 YTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQC 313 (662)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (662)
|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...++++.+. .|.+...+..+...+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGNVYV 102 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHHHHH
Confidence 3344444444444444444444444321 223344444444444444444444444444443 2333444444444444
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 006071 314 KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (662)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (662)
..|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444444444444444332 223333333444444444444444444443
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=4.5e-13 Score=133.24 Aligned_cols=272 Identities=13% Similarity=0.080 Sum_probs=202.2
Q ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCc--cccHHHHHHHHHhcCChhHHHHHHHHHHhcC------
Q 006071 339 HYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME--ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG------ 410 (662)
Q Consensus 339 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 410 (662)
.+..+...+...|++++|+..|+++++.. +. .+. ...+..+...+...|++++|...++++....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG----TE---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc----cc---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 34456667788899999999998887653 11 011 1357778888889999999999999887652
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC----C-CCCCHHhHHHHHHHHHhcCC-----------------hHHH
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----G-VPRDADAYICLIESYLRKGE-----------------PADA 468 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a 468 (662)
+....++..+...|...|++++|...++.+.+. + .+....++..+...|...|+ +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 344567888999999999999999999887653 1 11234578888899999999 9999
Q ss_pred HHHHHHHHHc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhCCCHHHH
Q 006071 469 KTALDSMIED----GHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK-EN----LDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 469 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A 538 (662)
...+++..+. +..+ ....+..+...+...|++++|...+++..+.... ++ ...+..+..+|...|++++|
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 9988887642 1111 2346777788899999999999999998765211 12 23677889999999999999
Q ss_pred HHHHHHHHhCCC-CCC-------HHHHHHHHhccCCHHHHHHHHHHHhcCCCCC-----ChhhHHHHHHHHHhcCCHHHH
Q 006071 539 LGRIDLMMQSGS-VPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII-----DLASYEKVLDALLAAGKTLNA 605 (662)
Q Consensus 539 ~~~~~~~~~~~~-~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A 605 (662)
++.+++...... ..+ ...++.++...|++++|..+++++++..... ....+..++.+|.+.|++++|
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 999998876211 111 2346667778999999999999888753221 144677899999999999999
Q ss_pred HHHHHHHHHcCC
Q 006071 606 YSILFKIMEKGG 617 (662)
Q Consensus 606 ~~~~~~~~~~~~ 617 (662)
.+.+++......
T Consensus 363 ~~~~~~al~~~~ 374 (411)
T 4a1s_A 363 LKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=4e-13 Score=133.42 Aligned_cols=282 Identities=12% Similarity=0.001 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006071 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT----VISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYT 270 (662)
Q Consensus 195 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 270 (662)
....+......+...|++++|...|++....+ +.+ ...+..+...+...|++++|...+++.....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------- 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------- 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---------
Confidence 34444455555555566666666665555432 112 1344455555555555555555555543210
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCChhhHHHHHH
Q 006071 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI-----PTEAGHYGILIE 345 (662)
Q Consensus 271 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~ 345 (662)
...+..|....++..+...+...|+++.|...+++...... .....++..+..
T Consensus 78 ----------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 78 ----------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp ----------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 00011111223344444444444555555544444433100 001234555666
Q ss_pred HHHcCCc--------------------HHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHH
Q 006071 346 NFCKAEM--------------------YDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQ 405 (662)
Q Consensus 346 ~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 405 (662)
.|...|+ +++|...+.+.++..... ........++..+...+...|++++|...+++
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6666666 666666666654432110 00001122445555566666666666666666
Q ss_pred HHhcC--CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHH
Q 006071 406 LMKKG--VLD----PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLIESYLRKGEPADAKTALDS 474 (662)
Q Consensus 406 ~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 474 (662)
..+.. .++ ..++..+..++...|++++|...++..... +..+ ...++..+...|...|++++|...+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 55432 111 124555555555566666666555554431 0000 023444555555555555555555555
Q ss_pred HHHcC----CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 475 MIEDG----HSPA-SSLFRSVMESLFEDGRVQTASRVMKSMV 511 (662)
Q Consensus 475 ~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 511 (662)
..+.. ..+. ..++..+...+...|++++|...+++..
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44220 0000 2233344444444555555555555443
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.4e-11 Score=116.61 Aligned_cols=217 Identities=10% Similarity=0.050 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHh-------cCCh-------HHHHHHHHhccc-CCCCCCHHHHHHHHHHH
Q 006071 37 EHALQFFRWVERAGLFNHDRETHLKMIEILGR-------VGKL-------NHARCILLDMPK-KGVQWDEDMFEVLIESY 101 (662)
Q Consensus 37 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 101 (662)
+.|+..|+.++... |.++..|..++..+.. .|++ ++|..+|++... ..+ .+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 78999999999986 8899999999988764 5776 889999998887 333 3677888888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcC-HH-hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-hcCCHH
Q 006071 102 GKKGIVQESVKIFDIMKQLGVERS-VK-SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF-LSLKLE 178 (662)
Q Consensus 102 ~~~g~~~~A~~~~~~~~~~g~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~ 178 (662)
.+.|++++|..+|+++.+.. |+ .. .|..++..+.+.|++++|..+|++.++.++ .+...|........ ..|+++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHH
T ss_pred HhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHH
Confidence 89999999999999988743 43 33 788888888888999999999998887642 34444443333322 258888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCC-CCC--CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 006071 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN-IEP--TVISYTTMIKGYVAVERADDALRIFD 255 (662)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 255 (662)
+|..+|+...+..+ .+...|..++..+.+.|++++|..+|++..... ++| ....|..++......|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888876532 367778888888888888888888888887752 344 35577777777777888888888887
Q ss_pred HHhhC
Q 006071 256 EMKSF 260 (662)
Q Consensus 256 ~~~~~ 260 (662)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.9e-11 Score=115.71 Aligned_cols=216 Identities=8% Similarity=0.022 Sum_probs=173.6
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSK-------EGNP-------DSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
++|...|+++....|.++..|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 688899999999889999999999888763 5886 89999999999831233677899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCc-HH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCCHHHHH
Q 006071 463 GEPADAKTALDSMIEDGHSPA-SS-LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL-MRGHVEEAL 539 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 539 (662)
|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++.++. +...|...+.... ..|++++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999964 454 33 7888888899999999999999999987554 4555544443322 379999999
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCC-CC--CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 540 GRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD-CI--IDLASYEKVLDALLAAGKTLNAYSILFKI 612 (662)
Q Consensus 540 ~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 612 (662)
++|++.++ ..|+ +..++..+...|++++|+.+|++++... .+ .....|..++..+.+.|+.++|..+++++
T Consensus 190 ~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999887 3344 3345667778899999999999999963 22 34667888888999999999999999998
Q ss_pred HHcCC
Q 006071 613 MEKGG 617 (662)
Q Consensus 613 ~~~~~ 617 (662)
.+..+
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87643
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=5.1e-13 Score=128.79 Aligned_cols=269 Identities=13% Similarity=0.043 Sum_probs=202.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCC-CCHHhHH
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVP-RDADAYI 453 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~ 453 (662)
+......+...|++++|...|+++.+..+.++ .++..+...+...|++++|...++.+... +.. ....++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 44556678899999999999999999886663 67888999999999999999999886542 111 1256788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----HHhHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 006071 454 CLIESYLRKGEPADAKTALDSMIEDGH-SPA----SSLFRSVMESLFEDGR--------------------VQTASRVMK 508 (662)
Q Consensus 454 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~~ 508 (662)
.+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 899999999999999999998875311 111 3367777788889999 999999999
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCCC-------HHHHHHHHhccCCHHHHHHHHH
Q 006071 509 SMVEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQS-GSVPN-------FDSLLSVLSEKGKTIAAVKLLD 575 (662)
Q Consensus 509 ~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-------~~~~~~~~~~~g~~~~A~~~~~ 575 (662)
+.... +..+ ....+..+...+...|++++|++.+++..+. +..++ ...++..+...|++++|..+++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87654 2111 2346778889999999999999999988752 11122 2345667778999999999999
Q ss_pred HHhcCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----C-CcHhhHHHHHHHHHhcCCcchhHHHHH
Q 006071 576 FCLGRDCIID-----LASYEKVLDALLAAGKTLNAYSILFKIMEKGG----V-TDWKSSDKLIAGLNQEGNTKQADILSR 645 (662)
Q Consensus 576 ~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (662)
++++...... ...+..++.++...|++++|.+.+++...... . .....+..+..+|...|++++|....+
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 8886532221 45677899999999999999999999875421 1 124466679999999999999977666
Q ss_pred Hhhhhc
Q 006071 646 MIRGEM 651 (662)
Q Consensus 646 ~~~~~~ 651 (662)
......
T Consensus 328 ~a~~~~ 333 (338)
T 3ro2_A 328 KHLEIS 333 (338)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 655443
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.2e-12 Score=131.64 Aligned_cols=210 Identities=12% Similarity=0.001 Sum_probs=172.7
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 006071 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP-DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALD 473 (662)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 473 (662)
..+.+...++......+.+...+..+..++...|++ ++|...|+++.+.. +.+...|..+..+|...|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356677777777777788899999999999999999 99999999988864 3368899999999999999999999999
Q ss_pred HHHHcCCCCcHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC--------CCHH
Q 006071 474 SMIEDGHSPASSLFRSVMESLFED---------GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR--------GHVE 536 (662)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 536 (662)
+..+. .|+...+..+...+... |++++|+..++++++..+. +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99864 47777888888888888 9999999999999988766 678888899999888 8899
Q ss_pred HHHHHHHHHHhCCCCC---C----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006071 537 EALGRIDLMMQSGSVP---N----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (662)
Q Consensus 537 ~A~~~~~~~~~~~~~p---~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
+|++.+++.++ ..| + +..++.++...|++++|...++++++..+. ....+..++.++...|++++|++.+
T Consensus 239 ~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998887 334 3 345677778889999999999988887643 4555667888888889998888765
Q ss_pred HH
Q 006071 610 FK 611 (662)
Q Consensus 610 ~~ 611 (662)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=5.7e-12 Score=109.22 Aligned_cols=165 Identities=16% Similarity=0.089 Sum_probs=108.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
+..|..+...+...|++++|+..|+++.+..|.++.++..+..+|...|++++|...+........ .+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHH
Confidence 345666667777777777777777777777777777777777777777777777777776665432 2555666666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006071 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (662)
...++++.|...+.+..+.. +.+...+..+...+...|++++|+..|+++++.++. +...|..++.+|...|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHH
Confidence 66777777777776666532 223455566666666677777777777776666554 5566666666677777777777
Q ss_pred HHHHHHHh
Q 006071 540 GRIDLMMQ 547 (662)
Q Consensus 540 ~~~~~~~~ 547 (662)
+.+++.++
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76666665
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=1.8e-12 Score=124.85 Aligned_cols=270 Identities=15% Similarity=0.050 Sum_probs=130.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCChhhHHH
Q 006071 272 LLPGLCDAGKMVEVQKVLREMVERYIPPKD----NSVFMKLLGVQCKSGHLNAAADVLKAMIRL----S-IPTEAGHYGI 342 (662)
Q Consensus 272 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 342 (662)
....+...|++++|...++++.+. .|.+ ...+..+...+...|+++.|...+++.... + .+....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 334445555555555555555553 2323 234445555555556666666555554331 1 0112345566
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCC--------------------hhHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQ--------------------TGKAEIF 402 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~ 402 (662)
+...|...|++++|...+++.++..... ........++..+...+...|+ +++|...
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISREL---NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 6777777777777777777765543110 0000112245556666666677 6667666
Q ss_pred HHHHHhcC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCHHhHHHHHHHHHhcCChHHHHHH
Q 006071 403 FRQLMKKG------VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PRDADAYICLIESYLRKGEPADAKTA 471 (662)
Q Consensus 403 ~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 471 (662)
++...... +....++..+...+...|++++|...++...+. +. .....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66654431 112234555566666666666666666555431 00 00112445555555555555555555
Q ss_pred HHHHHHcCCC-Cc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Q 006071 472 LDSMIEDGHS-PA----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK-----ENLDLVAKILEALLMRGHVEEALGR 541 (662)
Q Consensus 472 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 541 (662)
+++..+.... ++ ..++..+...+...|++++|...++++.+.... .....+..+..+|...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 5554421100 00 223344444455555555555555554432100 0022333444444444555555544
Q ss_pred HHHHH
Q 006071 542 IDLMM 546 (662)
Q Consensus 542 ~~~~~ 546 (662)
+++..
T Consensus 326 ~~~a~ 330 (338)
T 3ro2_A 326 AEKHL 330 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=8.3e-12 Score=122.55 Aligned_cols=233 Identities=10% Similarity=-0.013 Sum_probs=141.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC--CCC---ChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCC--CCcc
Q 006071 308 LLGVQCKSGHLNAAADVLKAMIRLS--IPT---EAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTL--DMEA 380 (662)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~ 380 (662)
....+...|+++.|...+++..+.. .+. ...++..+...|...|+++.|+..+.+.++... ..+. ....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~~ 184 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK----EHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TCSTTHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----hCccchHHHH
Confidence 5566777888888888888876631 111 235677788888899999999999988876542 1110 1122
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLD----PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PRDA 449 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 449 (662)
.++..+..+|...|++++|...++++.+.. ..+ ..++..+..+|...|++++|...+++..+. +. +...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 356667777778888888888887776543 111 235666777777777777777777766551 22 2234
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-CHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDG----HSPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKGVKE-NLDL 521 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~ 521 (662)
.++..+..+|.+.|++++|...+++..+.. -+.....+..+...+...|+ +++|..++++. +..| ....
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 341 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 566677777777777777777777665321 11111223445555566666 45555554443 1111 2234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 522 VAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+..+...|...|++++|.+.+++..+
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566666666666666666665553
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=1.3e-11 Score=107.01 Aligned_cols=163 Identities=14% Similarity=0.102 Sum_probs=87.3
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006071 448 DADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (662)
Q Consensus 448 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (662)
+...|..+...|.+.|++++|+..|++.++.. +-+...+..+...+...|++++|...++.+....+. +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34455555555555555555555555555432 123344455555555555555555555555554433 3444444555
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHH
Q 006071 528 ALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTL 603 (662)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 603 (662)
.+...++++.|.+.+++... ..|+ ...++.++...|++++|++.++++++..| .++..|..++.+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHH
Confidence 55555555555555555554 2222 22344455555666666666666665542 23445556666666666666
Q ss_pred HHHHHHHHHHHc
Q 006071 604 NAYSILFKIMEK 615 (662)
Q Consensus 604 ~A~~~~~~~~~~ 615 (662)
+|++.+++.++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 666666666654
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=1.1e-11 Score=121.76 Aligned_cols=235 Identities=14% Similarity=0.035 Sum_probs=162.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc----CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC------CCChhhHH
Q 006071 272 LLPGLCDAGKMVEVQKVLREMVER----YIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI------PTEAGHYG 341 (662)
Q Consensus 272 ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~ 341 (662)
....+...|++++|...+++.... +..+....++..+...+...|+++.|...+.+..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556667777777777776553 11111234566677777777777777777776654210 11234677
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCC-CCccccHHHHHHHHHhcCChhHHHHHHHHHHh-----cC-CCCH
Q 006071 342 ILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTL-DMEASSYNPMIQHLCHNGQTGKAEIFFRQLMK-----KG-VLDP 414 (662)
Q Consensus 342 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~ 414 (662)
.+...|...|++++|+..+++.++.... .+. .....++..+..+|...|++++|...+++... .. +...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEA----EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 7788888889999998888888765421 110 11123677788889999999999999999888 44 5567
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCCHHhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCc-HHh
Q 006071 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPRDADAYICLIESYLRKGE---PADAKTALDSMIEDGHSPA-SSL 486 (662)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~ 486 (662)
.++..+..++...|++++|...++...+. +-+.....+..+...+...|+ +++|+.++++. +..|+ ...
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 341 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 78899999999999999999999887652 111122345678888888888 67777777665 33333 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
+..+...|...|++++|...+++..+.
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 667888899999999999999998764
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=2.4e-12 Score=122.47 Aligned_cols=236 Identities=10% Similarity=0.016 Sum_probs=166.9
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC------C
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKK--------GVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR------G 444 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 444 (662)
...++..+...+...|++++|..+++.+.+. .+....++..+...+...|++++|...++.+... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456778888899999999999999999884 3555678889999999999999999999988753 1
Q ss_pred -CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 006071 445 -VPRDADAYICLIESYLRKGEPADAKTALDSMIED------GHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEK--- 513 (662)
Q Consensus 445 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 513 (662)
.+....++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1224567888999999999999999999998864 2223 3456777888899999999999999998875
Q ss_pred ---CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-------CCCCC---HHHH-------HHHHhccCCHHHHHH
Q 006071 514 ---GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQS-------GSVPN---FDSL-------LSVLSEKGKTIAAVK 572 (662)
Q Consensus 514 ---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~---~~~~-------~~~~~~~g~~~~A~~ 572 (662)
+..| ....+..+..+|...|++++|++.++++.+. ...+. .... ...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 3456778899999999999999999988752 12222 1111 112224566666677
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 573 LLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
.++.+.... +.....+..++.+|.+.|++++|.+.+++.++.
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777555532 233566778899999999999999999887653
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=6.4e-12 Score=126.33 Aligned_cols=214 Identities=10% Similarity=0.031 Sum_probs=149.5
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHH
Q 006071 72 LNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV-QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFN 150 (662)
Q Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 150 (662)
++++...++....... .+...+..+...+...|++ ++|.+.|+++.+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666666554332 3667777777777777777 77777777777654 3456677777777777777777777777
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc--------CChH
Q 006071 151 KMLSEGIEPTRHTYNVMLWGFFLS---------LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF--------KKMD 213 (662)
Q Consensus 151 ~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------g~~~ 213 (662)
+.++. .|+...+..+...+... |++++|...+++..+.... +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 77764 34556667777777777 7777777777777766332 567777777777777 7788
Q ss_pred HHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006071 214 EAEKLFAEMKEKNIE---PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLR 290 (662)
Q Consensus 214 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 290 (662)
+|...|++..... + .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|...+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888887777642 2 366677777777888888888888887776643 3455667777777777777777776665
Q ss_pred HH
Q 006071 291 EM 292 (662)
Q Consensus 291 ~~ 292 (662)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=4.3e-12 Score=120.72 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CC
Q 006071 268 TYTALLPGLCDAGKMVEVQKVLREMVER------YIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL------S-IP 334 (662)
Q Consensus 268 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~ 334 (662)
++..+...+...|++++|...++++.+. +..|.....+..+...+...|++++|...++.+... + .+
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 4444444555555555555555554442 112223444555556666666666666666655442 1 11
Q ss_pred CChhhHHHHHHHHHcCCcHHHHHHHHHHHHHh
Q 006071 335 TEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (662)
Q Consensus 335 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (662)
....++..+...|...|++++|...++++++.
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22345556666677777777777777766543
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=1.6e-10 Score=113.02 Aligned_cols=227 Identities=10% Similarity=-0.035 Sum_probs=166.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CC-CHHhHH
Q 006071 386 MIQHLCHNGQTGKAEIFFRQLMKKG--VL----DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PR-DADAYI 453 (662)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~ 453 (662)
....+...|++++|...|+++.... .+ ...++..+..+|...|+++.|...++...+. +. .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 4445678899999999999988754 22 3457888899999999999999999887652 11 11 245778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 006071 454 CLIESYLRKGEPADAKTALDSMIED----GHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVE-----KGVKENLDLVA 523 (662)
Q Consensus 454 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 523 (662)
.+..+|...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++.++ ..+. ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 8999999999999999999888753 1111 134567778888999999999999999887 4333 366778
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCC-C--CCCHH----HHHHHHhccCC---HHHHHHHHHHHhcCCCCCChhhHHHHH
Q 006071 524 KILEALLMRGHVEEALGRIDLMMQSG-S--VPNFD----SLLSVLSEKGK---TIAAVKLLDFCLGRDCIIDLASYEKVL 593 (662)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~--~p~~~----~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (662)
.++.++...|++++|++.+++..+.. . .|... .+...+...|+ +++|+.++++.- ..+.....+..++
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHH
Confidence 89999999999999999999888722 1 23322 23344556677 788888887521 1112244566789
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 006071 594 DALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 594 ~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
..|...|++++|.+.+++....
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887643
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=2.2e-10 Score=112.02 Aligned_cols=166 Identities=16% Similarity=0.110 Sum_probs=95.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC----CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CC----CChhhHHH
Q 006071 273 LPGLCDAGKMVEVQKVLREMVERYI----PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS--IP----TEAGHYGI 342 (662)
Q Consensus 273 l~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~----~~~~~~~~ 342 (662)
...+...|++++|...++++..... .+....++..+...+...|+++.|...+.+..... .. ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777765311 11123456667777777788877777777765421 01 12345667
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCC-CccccHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLD-MEASSYNPMIQHLCHNGQTGKAEIFFRQLMK-----KGVLDPVA 416 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 416 (662)
+...|...|++++|...+++.++.... .+.. ....++..+..++...|++++|...+++... ..+....+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMD----IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 777888888888888888877654311 0000 1122344555556666666666666666555 33333445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhh
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMGR 442 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 442 (662)
+..+..++...|++++|...++...+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555443
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=5.2e-10 Score=109.31 Aligned_cols=229 Identities=12% Similarity=0.025 Sum_probs=127.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC--CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCC--C-CHHhH
Q 006071 386 MIQHLCHNGQTGKAEIFFRQLMKKG--VLDP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVP--R-DADAY 452 (662)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~ 452 (662)
+...+...|+++.|...+++..... ..++ .++..+...+...|++++|...++..... +.. | ....+
T Consensus 59 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 138 (373)
T 1hz4_A 59 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHH
Confidence 3344444555555555555544432 1111 23445566666677777777666665431 111 1 22445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHH---
Q 006071 453 ICLIESYLRKGEPADAKTALDSMIEDGHS--P--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVA--- 523 (662)
Q Consensus 453 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~--- 523 (662)
..+...+...|++++|...+++....... + ....+..+...+...|++++|...+++.......+ ......
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 55666677777777777777776643211 1 12345555566677777777777777766541111 111111
Q ss_pred -HHHHHHHhCCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHhccCCHHHHHHHHHHHhcCCCCC----C-hhhHHH
Q 006071 524 -KILEALLMRGHVEEALGRIDLMMQSGSVPN------FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII----D-LASYEK 591 (662)
Q Consensus 524 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~-~~~~~~ 591 (662)
..+..+...|++++|...+++.......+. ...+...+...|++++|...+++++...... . ...+..
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 223345677777777777776654221111 1234455666777777777777666532111 1 124556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006071 592 VLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
++.++...|++++|...+++...
T Consensus 299 la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 67778888888888888887664
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=7.3e-10 Score=108.26 Aligned_cols=238 Identities=12% Similarity=0.045 Sum_probs=114.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC--C-Chhh
Q 006071 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKD----NSVFMKLLGVQCKSGHLNAAADVLKAMIRL----SIP--T-EAGH 339 (662)
Q Consensus 271 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~ 339 (662)
.+...+...|+++.|...+++.........+ ..++..+...+...|+++.|...+++.... +.+ | ....
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 3334444455555555555554432100001 122344555556666666666666555432 111 1 2234
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCHHHH
Q 006071 340 YGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAF 417 (662)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~ 417 (662)
+..+...+...|++++|...+++.++.. +..+......++..+...+...|++++|...++...... ...+..+
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 213 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVL----SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 213 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh----hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhH
Confidence 4556666777777777777777766543 111111112344555556666677777777766665432 1111111
Q ss_pred H-----HHHHHHHhcCChhHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCcH-
Q 006071 418 N-----NLIRGHSKEGNPDSAFEIVKIMGRRGVPR---DADAYICLIESYLRKGEPADAKTALDSMIED----GHSPAS- 484 (662)
Q Consensus 418 ~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~- 484 (662)
. ..+..+...|++++|...++........+ ....+..+...+...|++++|...+++.... |..++.
T Consensus 214 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 293 (373)
T 1hz4_A 214 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 293 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 1 22233556677777776666655432111 1123445555566666666666666555422 111111
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 485 SLFRSVMESLFEDGRVQTASRVMKSMVE 512 (662)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 512 (662)
..+..+..++...|+.++|...+++...
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1233334444555555555555555443
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=3.1e-10 Score=102.10 Aligned_cols=195 Identities=12% Similarity=-0.027 Sum_probs=145.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHH
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 490 (662)
+.++..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 457788888999999999999999999998886544677777779999999999999999999998753 2346678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHH----H
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENL-------DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN--FDS----L 557 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~----~ 557 (662)
...+...|++++|+..++++++..+. +. ..|..+..++...|++++|++.++++++ ..|+ ... +
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHH
Confidence 88899999999999999999887655 44 4577788888899999999999998887 5665 322 3
Q ss_pred HHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 558 LSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
+.++. ..+..+++++..... .+...|. .......|.+++|++.+++..+..+
T Consensus 160 ~~~~~-----~~~~~~~~~a~~~~~-~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 160 GVLFY-----NNGADVLRKATPLAS-SNKEKYA--SEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHH-----HHHHHHHHHHGGGTT-TCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHH-----HHHHHHHHHHHhccc-CCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 33333 334444555555432 2233332 2334456778999999999888743
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=2.9e-10 Score=98.49 Aligned_cols=163 Identities=17% Similarity=0.072 Sum_probs=105.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (662)
.+..+...+...|++++|...++.+....+.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 344555566667777777777777666666666677777777777777777777777666542 2355666666667777
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006071 462 KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGR 541 (662)
Q Consensus 462 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 541 (662)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.++...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777666542 234455566666666677777777777766665433 455666666666666777777666
Q ss_pred HHHHHh
Q 006071 542 IDLMMQ 547 (662)
Q Consensus 542 ~~~~~~ 547 (662)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=7.3e-10 Score=95.92 Aligned_cols=165 Identities=15% Similarity=0.060 Sum_probs=123.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (662)
...+..++..+...|++++|...++++.+..+. +..++..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 456677778888888888888888888776443 67778888888888888888888888887754 3466777777888
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHH
Q 006071 136 ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEA 215 (662)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 215 (662)
+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888877653 3356667777777777788888888887777653 23566777777777777777777
Q ss_pred HHHHHHHHH
Q 006071 216 EKLFAEMKE 224 (662)
Q Consensus 216 ~~~~~~~~~ 224 (662)
...++...+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=1.5e-10 Score=120.86 Aligned_cols=166 Identities=14% Similarity=0.088 Sum_probs=149.0
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (662)
+...++.+...+...|++++|+..|+++++..|.+..++..+..+|...|++++|+..|+++.+.+.. +...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999886533 68899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (662)
|.+.|++++|++.+++.++.. +-+...+..+...+...|++++|++.|+++++..+. +...+..++.+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999754 234678889999999999999999999999998776 788889999999999999999
Q ss_pred HHHHHHHHh
Q 006071 539 LGRIDLMMQ 547 (662)
Q Consensus 539 ~~~~~~~~~ 547 (662)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887764
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=1.8e-10 Score=120.36 Aligned_cols=164 Identities=20% Similarity=0.159 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006071 266 AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (662)
Q Consensus 266 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (662)
..+|+.+..++...|++++|+..|++.++. .|.+..++..+..++.+.|++++|+..|++.++.. +.+...+..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344555555555555555555555555553 44455555555555555555555555555555432 333444555555
Q ss_pred HHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
+|...|++++|++.|+++++.. + -+...|..+..++...|++++|+..|+++.+..|.+..++..++.++.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~----P-----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN----P-----AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 5555555555555555544332 1 123344444444445555555555555555444444445555555555
Q ss_pred hcCChhHHHHHHHHHh
Q 006071 426 KEGNPDSAFEIVKIMG 441 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~ 441 (662)
..|++++|.+.++++.
T Consensus 157 ~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLV 172 (723)
T ss_dssp HTTCCTTHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHH
Confidence 5555555544444443
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=6.3e-11 Score=110.79 Aligned_cols=223 Identities=11% Similarity=0.015 Sum_probs=152.7
Q ss_pred hcCChhHHHHHHHHHHhc-------C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC------CC-CCCHHhHHHHH
Q 006071 392 HNGQTGKAEIFFRQLMKK-------G-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR------GV-PRDADAYICLI 456 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 456 (662)
..|+++.|..++++..+. . +....++..+..++...|++++|...++.+.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 457777777777766652 2 345668889999999999999999999988753 11 22456788999
Q ss_pred HHHHhcCChHHHHHHHHHHHHc------CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-CHHHH
Q 006071 457 ESYLRKGEPADAKTALDSMIED------GHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GV-KE-NLDLV 522 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~ 522 (662)
..|...|++++|...++++.+. .-.| ...++..+...+...|++++|...++++++. +. .| ....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998864 1113 3566778888999999999999999998875 11 22 34567
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC-------CCCCC---H-HHHHHHHhc------cCCHHHHHHHHHHHhcCCCCCC
Q 006071 523 AKILEALLMRGHVEEALGRIDLMMQS-------GSVPN---F-DSLLSVLSE------KGKTIAAVKLLDFCLGRDCIID 585 (662)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~---~-~~~~~~~~~------~g~~~~A~~~~~~~~~~~~~~~ 585 (662)
..+..+|...|++++|+++++++.+. ...+. . ..+...... ...+.++...++... ...+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK-VDSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC-CCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-CCCHHH
Confidence 88999999999999999999988752 12222 1 112222222 223333444433221 111223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 586 LASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
...+..++.+|...|++++|.+.+++.++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556778999999999999999999987653
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.7e-09 Score=97.23 Aligned_cols=203 Identities=8% Similarity=0.022 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006071 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (662)
Q Consensus 90 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 169 (662)
++..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..|++.++..+ .+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 55677777777777777777777777777765335666666677777777777777777777776532 24556666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC---HhhHHHHHH
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGISLDV-------VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT---VISYTTMIK 239 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 239 (662)
.+...|++++|...+++..+..+. +. ..|..+...+...|++++|...|+...+. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 777777777777777777765322 34 34556666666777777777777776654 233 345555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHH
Q 006071 240 GYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFM 306 (662)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 306 (662)
+|...| ..+++.+...+ ..+...|..... ...+.+++|...+++..+. .|.+..+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~~~~~~ 218 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNRTEIKQ 218 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 554433 23334443332 223333333222 2334456666666666654 444444433
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=4e-10 Score=105.28 Aligned_cols=134 Identities=14% Similarity=0.158 Sum_probs=76.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC------CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC
Q 006071 233 SYTTMIKGYVAVERADDALRIFDEMKSF------DV-KPNAVTYTALLPGLCDAGKMVEVQKVLREMVER------YIPP 299 (662)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~ 299 (662)
++..+...+...|++++|...++++... +- +....++..+...+...|++++|...+.++... ...|
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 4444445555555555555555444321 11 112334555555555666666666665555443 1123
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHh
Q 006071 300 KDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL------S-IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (662)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (662)
....++..+...+...|++++|...+++..+. + .+....++..+...|...|++++|...++++++.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666666677777777777777666553 1 1223456677778888888888888888887664
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=1.4e-09 Score=100.02 Aligned_cols=213 Identities=11% Similarity=0.033 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc-HH
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD---ADAYICLIESYLRKGEPADAKTALDSMIEDGH-SPA-SS 485 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~ 485 (662)
+.++..+..+...+...|++++|...|+.+.+.... + ...+..+..+|.+.|++++|...|++.++... .|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 455666666666677777777777777776664321 2 45666666667777777777777777665421 111 23
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006071 486 LFRSVMESLFE--------DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSL 557 (662)
Q Consensus 486 ~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 557 (662)
.+..+..++.. .|++++|+..|+++++..+.. ......+.......+...+ ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~a~~~~~~~~~~~~~---------------~~~~l 154 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH-ELVDDATQKIRELRAKLAR---------------KQYEA 154 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC-TTHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc-hhHHHHHHHHHHHHHHHHH---------------HHHHH
Confidence 44455555555 666666666666666654331 1111111100000000000 01345
Q ss_pred HHHHhccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCc--Hhh
Q 006071 558 LSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAA----------GKTLNAYSILFKIMEKGGVTD--WKS 623 (662)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~--~~~ 623 (662)
+..+...|++++|+..++++++..+... ...+..++.+|... |++++|++.+++++...+... ...
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a 234 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTA 234 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHH
Confidence 6677788999999999998888765432 45566788888866 888999999999887643322 223
Q ss_pred HHHHHHHHHhcCCcchh
Q 006071 624 SDKLIAGLNQEGNTKQA 640 (662)
Q Consensus 624 ~~~l~~~~~~~g~~~~a 640 (662)
...+..++...|+.+++
T Consensus 235 ~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 235 EELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 34455556555555554
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=7.2e-10 Score=103.74 Aligned_cols=193 Identities=13% Similarity=0.017 Sum_probs=116.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhhC----CCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--HHhHHHH
Q 006071 421 IRGHSKEGNPDSAFEIVKIMGRR----GVPRD-ADAYICLIESYLRKGEPADAKTALDSMIEDGH---SPA--SSLFRSV 490 (662)
Q Consensus 421 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l 490 (662)
+..|...|++++|...|.+.... +-+++ ..+|+.+..+|...|++++|+..+++.++... .+. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566778888888877766542 21111 45777778888888888888888877764310 111 2356666
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-C--------HH
Q 006071 491 MESLFED-GRVQTASRVMKSMVEKGVKE-N----LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVP-N--------FD 555 (662)
Q Consensus 491 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~--------~~ 555 (662)
...|... |++++|+..|++.++..+.. + ..++..++..+...|++++|+..+++..+..... . +.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 6777775 88888888888777652211 1 3456677777778888888888887777632221 1 12
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhcCCCCCCh----hhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 006071 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDL----ASYEKVLDALL--AAGKTLNAYSILFKIM 613 (662)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 613 (662)
.++.++...|++++|+..++++++..+.... ..+..++..+. ..+++++|++.++++.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 2344556677888888888877776543221 12233444443 3456777777765543
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=9.5e-09 Score=93.57 Aligned_cols=242 Identities=10% Similarity=0.062 Sum_probs=131.6
Q ss_pred HHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHH
Q 006071 66 LGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMA 145 (662)
Q Consensus 66 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 145 (662)
..-.|++..++.-...+... ........+.++|...|++... ....|....+..+...+ ..+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 34556666666644433221 1223333444666666665531 01123332333332222 211 5
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 006071 146 KRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGI-SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (662)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 224 (662)
+..|++++..+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666665543 33444445566666677777777777777655543 12456666667777777777777777777765
Q ss_pred CCCCC-----CHhhHHHHHHH--HHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 006071 225 KNIEP-----TVISYTTMIKG--YVAVE--RADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVER 295 (662)
Q Consensus 225 ~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 295 (662)
. .| +..+...|+.+ ....| ++.+|..+|+++... .|+..+...++.++.+.|++++|...++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 34 23444444444 22223 677777777776554 344333333444666777777777777755442
Q ss_pred C-----C---CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006071 296 Y-----I---PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL 331 (662)
Q Consensus 296 ~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 331 (662)
. . .|.++.+...++......|+ .|.+++.++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 1 0 25566666566555555665 666777777664
No 90
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.16 E-value=2.3e-08 Score=100.20 Aligned_cols=376 Identities=7% Similarity=0.020 Sum_probs=219.6
Q ss_pred hcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHH
Q 006071 173 LSL-KLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER-ADDA 250 (662)
Q Consensus 173 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 250 (662)
+.| +++.|..+|+.+... -|. |+++.+..+|++.... .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377777777777654 223 8888888898888774 4688888888877776663 3455
Q ss_pred HHHHHHHhh-CCC-CCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHhcCChHHHHH
Q 006071 251 LRIFDEMKS-FDV-KPNAVTYTALLPGLCD----AGKMVEVQKVLREMVERYIPPKDN-SVFMKLLGVQCKSGHLNAAAD 323 (662)
Q Consensus 251 ~~~~~~~~~-~~~-~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~ 323 (662)
..+|+.... .|. ..+...|...+..+.. .++.+.+..+|++++.. ++.+. ..|...... ........+..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~f-E~~~~~~~~~~ 144 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENF-ELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHH-HHHhccccHHH
Confidence 667776654 232 3356677777665432 35677788888888773 22122 122222111 11111222222
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcC-C------h
Q 006071 324 VLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG-Q------T 396 (662)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~------~ 396 (662)
++.+. .+.+..|..+++.+.... +. .+...|...+..-...+ . .
T Consensus 145 ~~~~~---------------------~~~y~~ar~~y~~~~~~~----~~----~s~~~W~~y~~~E~~~~~~~~~~~~~ 195 (493)
T 2uy1_A 145 IVGDT---------------------LPIFQSSFQRYQQIQPLI----RG----WSVKNAARLIDLEMENGMKLGGRPHE 195 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHH----HT----CSHHHHHHHHHHHHTCTTCCCHHHHH
T ss_pred HHHHH---------------------hHHHHHHHHHHHHHHHHH----hh----ccHHHHHHHHHHHhcCCccCcchhhH
Confidence 22211 123444555555543221 11 12234555444433221 1 3
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 476 (662)
+.+..+|++++...+.++..|...+..+...|+.+.|..+++..... +.+...|.. |....+.++. ++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHH
Confidence 45678999999888888999999999999999999999999999887 334333332 2222122222 22222
Q ss_pred HcC---------C---CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHH
Q 006071 477 EDG---------H---SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG-HVEEALGRID 543 (662)
Q Consensus 477 ~~~---------~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 543 (662)
+.- . ......|...+..+.+.+..+.|..+|+++ .. +..+...|...+..-...+ +++.|..+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0 011245666666666778899999999998 32 2335555543333333334 6899999999
Q ss_pred HHHh-CCCCCCH-HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 544 LMMQ-SGSVPNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 544 ~~~~-~~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
..++ .+..|+. ...++.....|+.+.|+.+++++.+ ....|...++.-...|+.+.+.+++++...
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8887 3333332 2345555678899999999998732 355566666656677999999888888774
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=1.4e-08 Score=92.46 Aligned_cols=173 Identities=9% Similarity=0.015 Sum_probs=104.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-----CHHhHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV--LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR-----DADAYI 453 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~ 453 (662)
.++..+..++...|++++|+.++.+.+..++ .+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+..
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHH
Confidence 3344555666667777777777777666554 56667777777777777777777777777664 34 234444
Q ss_pred HHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCCHH
Q 006071 454 CLIES--YLRKG--EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV---------KENLD 520 (662)
Q Consensus 454 ~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~ 520 (662)
.++.+ ....| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.+..+ ..++.
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 44444 22223 777777777777643 24422333344467777788888777776554310 12455
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVL 561 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~ 561 (662)
++..++.+....|+ +|.+++.++.+ ..|+...+.+.-
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~d~~ 293 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIKHHQ 293 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHHHHH
Confidence 55455555555665 67777777776 556644444433
No 92
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.14 E-value=3.3e-08 Score=91.19 Aligned_cols=230 Identities=8% Similarity=-0.005 Sum_probs=179.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH----Hhc---
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG--NPDSAFEIVKIMGRRGVPRDADAYICLIESY----LRK--- 462 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 462 (662)
.....++|+.+++.++..+|.+..+|+.-..++...+ ++++++.+++.+...++. +..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3445578999999999999999999999999999999 999999999999986544 566776655555 555
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC------
Q 006071 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQ--TASRVMKSMVEKGVKENLDLVAKILEALLMRGH------ 534 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 534 (662)
+++++++.+++.+.+.. +-+..+|..-...+...|.++ ++++.++++++.++. |...|+.-...+...|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 78999999999999754 446788888777888888888 999999999999887 88888888887888776
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHH-HHHHHHHHHhcCC--CCCChhhHHHHHHHHHhcCCHHHHHH
Q 006071 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTI-AAVKLLDFCLGRD--CIIDLASYEKVLDALLAAGKTLNAYS 607 (662)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~-~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
++++++.+++++. ..|+ +.....++.+.|+.. ++..+.++.++.+ ...++..+..++++|.+.|+.++|++
T Consensus 202 ~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 8999999998887 5555 334555666777644 4666777766643 12345667789999999999999999
Q ss_pred HHHHHHHcCCCCcHhhHHH
Q 006071 608 ILFKIMEKGGVTDWKSSDK 626 (662)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~ 626 (662)
.++.+.++-++-...-|+.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHhccChHHHHHHHH
Confidence 9999887544434444443
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.14 E-value=9e-08 Score=95.92 Aligned_cols=370 Identities=9% Similarity=-0.019 Sum_probs=205.1
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCC-hhHHHHHHHHHHhC-CCC-cCHHHHHHHHHHHH----hcCCH
Q 006071 105 GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR-YMMAKRYFNKMLSE-GIE-PTRHTYNVMLWGFF----LSLKL 177 (662)
Q Consensus 105 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~~-~~~~~~~~ll~~~~----~~~~~ 177 (662)
|+++.+..+|++.... .|++..|...+....+.+. .+....+|+..+.. |.. .+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7888888888888873 4788888888877777663 35566777776553 432 35566776666543 23567
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEM 257 (662)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (662)
+.+..+|+.+.......-...|......- .......+..++.+.. +.+..|..+++.+
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTL---------------------PIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------HHHHHHHHHHHHH
Confidence 77888888888742111112232222211 1112222333322211 1223333333333
Q ss_pred hhCCCCCCHHHHHHHHHHHHhC--CC-----HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006071 258 KSFDVKPNAVTYTALLPGLCDA--GK-----MVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 258 ~~~~~~~~~~~~~~ll~~~~~~--g~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 330 (662)
...--..+...|...+..-... |- .+.+..+|++++.. .|..+..|...+..+.+.|+.+.|..++++...
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2110001333555544432221 11 34577888888885 355788899999999999999999999999988
Q ss_pred CCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 006071 331 LSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (662)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (662)
. |.+...+.. |....+.++ +++.+.+.... ...+.+. . ...
T Consensus 242 ~--P~~~~l~~~----y~~~~e~~~---~~~~l~~~~~~------------------------~~~~~~~-----~-~~~ 282 (493)
T 2uy1_A 242 M--SDGMFLSLY----YGLVMDEEA---VYGDLKRKYSM------------------------GEAESAE-----K-VFS 282 (493)
T ss_dssp H--CCSSHHHHH----HHHHTTCTH---HHHHHHHHTC----------------------------------------CH
T ss_pred C--CCcHHHHHH----HHhhcchhH---HHHHHHHHHHh------------------------hccchhh-----h-hcc
Confidence 7 444333322 221111111 13333211100 0000000 0 000
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCcHHhHHH
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG-EPADAKTALDSMIEDGHSPASSLFRS 489 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 489 (662)
.....+|...+....+.++.+.|..+|+.+ .. ...+...|...+..-...+ +++.|..+|+...+.. +-+...+..
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~ 359 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 112345666666666677788888888887 32 1234445543333222233 5888888888887643 222344555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 490 VMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.+......|+.+.|..+|+.+. .....|...+..-...|+.+.+.+++++...
T Consensus 360 yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666677788888888888862 1466777777766777888888887777664
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.12 E-value=8.7e-09 Score=92.13 Aligned_cols=193 Identities=10% Similarity=0.047 Sum_probs=119.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 006071 448 DADAYICLIESYLRKGEPADAKTALDSMIEDGHS-P-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--DLVA 523 (662)
Q Consensus 448 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 523 (662)
+...+..+...+.+.|++++|+..|+++++.... | ....+..+..++...|++++|+..|+++++..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456666777888889999999999998865321 1 1346677788888899999999999998887554322 2344
Q ss_pred HHHHHHHh------------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCC
Q 006071 524 KILEALLM------------------RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID 585 (662)
Q Consensus 524 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 585 (662)
.+..++.. .|++++|+..++++++ ..|+......++...+..... +
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~-------~------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDR-------L------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHH-------H-------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHH-------H-------
Confidence 45555544 3455555555555554 222211111111000000000 0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HhhHHHHHHHHHhcCCcchhHHHHHHhhhhccccch
Q 006071 586 LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD--WKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQ 656 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 656 (662)
......++..|.+.|++++|+..++++++..+... ...+..+..+|.+.|++++|....+.+...++....
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 00113567888888999999999998887643322 345677888899999999997777777766655544
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=1.2e-09 Score=102.30 Aligned_cols=164 Identities=18% Similarity=0.106 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHhc-CChHHHHHHHHHHHHcCC---CC-c-
Q 006071 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLIESYLRK-GEPADAKTALDSMIEDGH---SP-A- 483 (662)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~-~- 483 (662)
.+++.+..+|...|++++|+..++...+. |-.. -..++..+...|... |++++|+..+++.++... .+ .
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34555555555555555555555554431 1000 124566677777774 777777777777664310 00 0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH--
Q 006071 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL------DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD-- 555 (662)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-- 555 (662)
..++..+...+...|++++|+..|+++.+..+.... ..+..++.++...|++++|+..+++.++ +.|++.
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCc
Confidence 235666677777778888888888777776443221 1456677777778888888888777765 344321
Q ss_pred -------HHHHHHh--ccCCHHHHHHHHHHHhcC
Q 006071 556 -------SLLSVLS--EKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 556 -------~~~~~~~--~~g~~~~A~~~~~~~~~~ 580 (662)
.+...+. ..+++++|+..+++++..
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 1233332 346677777777765554
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.09 E-value=3.9e-09 Score=90.22 Aligned_cols=163 Identities=9% Similarity=-0.006 Sum_probs=114.6
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHH-
Q 006071 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES- 100 (662)
Q Consensus 22 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 100 (662)
........+...|++++|+..|+.+++.+ |.++.++..+..++...|++++|...++++....+ ++..+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 34455667788889999999998888776 77888888888889999999999999988877643 44433332222
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHH
Q 006071 101 YGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHTYNVMLWGFFLSLKLET 179 (662)
Q Consensus 101 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~ 179 (662)
+...+...+|...|++..+.. +.+...+..+..++...|++++|...|+++++..+.+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 122233345677777777654 3456777778888888888888888888877754332 34566677777777788887
Q ss_pred HHHHHHHHHh
Q 006071 180 AIRFFEDMKS 189 (662)
Q Consensus 180 a~~~~~~~~~ 189 (662)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776543
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=5.3e-09 Score=96.20 Aligned_cols=206 Identities=13% Similarity=-0.013 Sum_probs=135.7
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-C-CCHHhHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD---PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV-P-RDADAYI 453 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~ 453 (662)
+...+......+...|++++|...|+.+....|.+ +.++..+..++...|++++|...|+.+.+..+ . .....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 44556677778889999999999999999988777 88899999999999999999999999988532 1 2246677
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006071 454 CLIESYLR--------KGEPADAKTALDSMIEDGHSPAS-SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAK 524 (662)
Q Consensus 454 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 524 (662)
.+..++.. .|++++|...|+++++.. |+. .....+. .+..+... ....+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHHHHH
Confidence 88888888 999999999999999753 432 2221110 01111000 0112445
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC-CCCCCH----HHHHHHHhcc----------CCHHHHHHHHHHHhcCCCCCC--hh
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQS-GSVPNF----DSLLSVLSEK----------GKTIAAVKLLDFCLGRDCIID--LA 587 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~----~~~~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~--~~ 587 (662)
++.+|...|++++|+..++++++. +..|.. ..++.++... |++++|+..++++++..|... ..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 667777777777777777777662 222221 1233444433 777778888877777654433 22
Q ss_pred hHHHHHHHHHhcCCHHH
Q 006071 588 SYEKVLDALLAAGKTLN 604 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~ 604 (662)
....+..++...|++++
T Consensus 234 a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 234 AEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33344444444454444
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.08 E-value=1.1e-08 Score=91.38 Aligned_cols=187 Identities=13% Similarity=0.071 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH----h
Q 006071 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-R-DADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS----L 486 (662)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~ 486 (662)
++..+..++..+...|++++|...|+.+.+..+. | ....+..++.+|.+.|++++|+..|+++++.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4566777888899999999999999999875322 1 24678889999999999999999999999754 3321 3
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 006071 487 FRSVMESLFE------------------DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQS 548 (662)
Q Consensus 487 ~~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 548 (662)
+..+..++.. .|++++|+..|+++++..+. +...+...... +... ..+..
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~~~~------~~~~~- 148 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----VFLK------DRLAK- 148 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----HHHH------HHHHH-
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----HHHH------HHHHH-
Confidence 4444444443 57899999999999987554 22222211110 0000 01100
Q ss_pred CCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 549 GSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 549 ~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
....++..+...|++++|+..++++++..|... +..+..++.++.+.|++++|++.++++...++
T Consensus 149 ----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 149 ----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 012356677889999999999999999865543 35677899999999999999999998887654
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=1.1e-07 Score=87.61 Aligned_cols=223 Identities=11% Similarity=0.113 Sum_probs=153.5
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcC--ChHHHHHHHHhcccCCCCCCHHHHHHHHHHH----Hhc
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG--KLNHARCILLDMPKKGVQWDEDMFEVLIESY----GKK 104 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 104 (662)
......++|++.++.++..+ |.+..+|+.-..++...| ++++++.+++.+....+. +..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 34445679999999999987 788889999999998888 999999999988887655 666777665555 444
Q ss_pred ---CChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChh--HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC---
Q 006071 105 ---GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM--MAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK--- 176 (662)
Q Consensus 105 ---g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--- 176 (662)
+++++++.+++.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++++..+ .|...|+.....+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccch
Confidence 67888888888888765 567778877777777778877 88888888877643 366677666555555555
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHH
Q 006071 177 ---LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDE-AEKLFAEMKEKN--IEPTVISYTTMIKGYVAVERADDA 250 (662)
Q Consensus 177 ---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 250 (662)
++++++.++.+....+. |...|+.+-..+.+.|+... +..+.+.+...+ -+.+...+..++..|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 66677777766665433 66667666666666665333 334444443321 123455566666666666666666
Q ss_pred HHHHHHHhh
Q 006071 251 LRIFDEMKS 259 (662)
Q Consensus 251 ~~~~~~~~~ 259 (662)
+++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.06 E-value=4.6e-09 Score=92.53 Aligned_cols=158 Identities=12% Similarity=0.079 Sum_probs=88.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHH----------------HHHHHHhcCChHHHHHHHHhcccCCCCCC
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLK----------------MIEILGRVGKLNHARCILLDMPKKGVQWD 90 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 90 (662)
...+...|++++|+..|+.+.+.+ |.++.+|.. +..++.+.|++++|...|++..+..+. +
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~ 87 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-N 87 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-C
Confidence 346678999999999999999876 666777766 566666666666666666665554433 5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006071 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR--YMMAKRYFNKMLSEGIEPTRHTYNVML 168 (662)
Q Consensus 91 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~ll 168 (662)
...+..+...+...|++++|...|+++.+.. |.+..+|..+..++...|+ ...+...+..... ..|....+....
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 5556666666666666666666666665543 2345555555555544332 2233333433321 111111222223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 006071 169 WGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
.++...|++++|...|++..+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 3333445555555555555543
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=1.1e-09 Score=90.59 Aligned_cols=145 Identities=7% Similarity=-0.023 Sum_probs=108.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 106 (662)
..++...|+++.|+..++.+.... |.++..+..+..+|.+.|++++|...|++.++..+. +..+|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 345556778899999998887654 556667788888999999999999999988877654 78888888889999999
Q ss_pred hhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHH-HHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006071 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRY-FNKMLSEGIEPTRHTYNVMLWGFFLSLK 176 (662)
Q Consensus 107 ~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 176 (662)
+++|...|+...+.. +.++.+|..+...+.+.|++++|... +++.++.. +-++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999999888765 34677888888888888888776654 47776653 2356666666666555553
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.04 E-value=2e-08 Score=88.60 Aligned_cols=174 Identities=11% Similarity=0.014 Sum_probs=101.2
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcC----CHHHHHHHH
Q 006071 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG----RVQTASRVM 507 (662)
Q Consensus 432 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 507 (662)
+|...|+...+.| ++..+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3445555555543 55556666666666666666666666666543 33444444444544 4 666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCC---CC-HHHHHHHHhc----cCCHHHHHHHHH
Q 006071 508 KSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSV---PN-FDSLLSVLSE----KGKTIAAVKLLD 575 (662)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---p~-~~~~~~~~~~----~g~~~~A~~~~~ 575 (662)
++..+.+ +...+..+...|.. .+++++|++.+++..+.+.. |. ...+...|.. .+++++|+.+++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 34455556666655 56667777776666654442 22 3344555544 567777777777
Q ss_pred HHhcCCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 006071 576 FCLGRDCIIDLASYEKVLDALLAA-G-----KTLNAYSILFKIMEKGG 617 (662)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 617 (662)
++++.+ .++..+..++.+|... | ++++|++++++..+.+.
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777651 2233445577776653 3 77777777777777654
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=3.8e-09 Score=111.20 Aligned_cols=174 Identities=11% Similarity=-0.063 Sum_probs=113.7
Q ss_pred hcCCCHHHHHHHHHHHH--------HcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 31 HGAKNSEHALQFFRWVE--------RAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
...|++++|++.|+.++ +.+ |.+..++..+..++...|++++|...|+++.+..+. +...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 56677777777777776 444 566677777777777777777777777777665443 5667777777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIR 182 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 182 (662)
..|++++|...|+++.+.. +.+...|..+..++.+.|++++ +..|++.++.++ .+...|..+..++...|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777776654 3355666677777777777777 777777766532 255566666777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006071 183 FFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (662)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 211 (662)
.|+++.+.+.. +...+..+..++...++
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 77776655221 34555555555554443
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=1.1e-08 Score=95.29 Aligned_cols=161 Identities=13% Similarity=0.096 Sum_probs=127.8
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH--H--
Q 006071 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD--S-- 556 (662)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~-- 556 (662)
+.+...+..+...+...|++++|...|+++++..+. +...+..++.++.+.|++++|+..++++.. ..|+.. .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHH
Confidence 344566677778888999999999999999998776 678888899999999999999999998876 345532 1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHHhcC
Q 006071 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV-TDWKSSDKLIAGLNQEG 635 (662)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 635 (662)
....+...++.++|...++++++..| .+...+..++..|...|++++|++.+++++..... .+...+..|+..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22235567888889999999998864 34556668999999999999999999999987543 23667788999999999
Q ss_pred CcchhHHHHH
Q 006071 636 NTKQADILSR 645 (662)
Q Consensus 636 ~~~~a~~~~~ 645 (662)
+.++|....+
T Consensus 270 ~~~~a~~~~r 279 (287)
T 3qou_A 270 TGDALASXYR 279 (287)
T ss_dssp TTCHHHHHHH
T ss_pred CCCcHHHHHH
Confidence 9999854433
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=3.4e-08 Score=79.93 Aligned_cols=128 Identities=18% Similarity=0.256 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE 496 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (662)
+..++..+...|++++|..+++.+.+.+ +.+...+..++..+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4445555555556666666555555432 2244555555555555566666666666555432 2233445555555566
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 497 DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 497 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.|++++|..+++.+.+..+. +...+..++.++...|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666555333 344555566666666666666666665554
No 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=2.6e-08 Score=80.62 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=116.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (662)
.+..+...+...|++++|..+++.+.+..+.+..++..++..+...|++++|..+++.+...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 466778888899999999999999999888889999999999999999999999999998764 3467888999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 462 KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV 515 (662)
Q Consensus 462 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 515 (662)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.++
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999998754 33567788888999999999999999999987644
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=1.8e-08 Score=88.65 Aligned_cols=191 Identities=11% Similarity=0.039 Sum_probs=91.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (662)
...+...+..+...|++++|...|++.....+. +...+... ..... ..........+..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDKN--------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcch--------------hhhhHHHHHHHHHH
Confidence 334444555566677777777777776654321 23333330 00000 00001111225555
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC--hH
Q 006071 136 ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK--MD 213 (662)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~ 213 (662)
+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|...|+++.+..+. +...+..+..+|...|+ ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 556666666666666665542 224555555555666666666666666666554322 45555555555544332 22
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006071 214 EAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTAL 272 (662)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 272 (662)
.+...++.... ..|....+..+..++...|++++|+..|++..+. .|+......+
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 33344433321 1222223333444555566666666666666653 4555444433
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=1.2e-08 Score=107.44 Aligned_cols=159 Identities=9% Similarity=-0.046 Sum_probs=137.5
Q ss_pred HhcCChhHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 391 CHNGQTGKAEIFFRQLM--------KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 391 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
...|++++|+..++++. +..+.+...+..+..++...|++++|...++.+.+.+. .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 67899999999999998 66688888999999999999999999999999988643 3788999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (662)
|++++|...|++.++.. +-+...+..+..++...|++++ +..|+++++.++. +...|..+..++...|++++|++.+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998754 2245677888889999999999 9999999998776 6778888999999999999999999
Q ss_pred HHHHhCCCCCCHH
Q 006071 543 DLMMQSGSVPNFD 555 (662)
Q Consensus 543 ~~~~~~~~~p~~~ 555 (662)
+++.+ ..|+..
T Consensus 558 ~~al~--l~P~~~ 568 (681)
T 2pzi_A 558 DEVPP--TSRHFT 568 (681)
T ss_dssp HTSCT--TSTTHH
T ss_pred Hhhcc--cCcccH
Confidence 98876 677743
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=4.3e-08 Score=86.49 Aligned_cols=180 Identities=12% Similarity=-0.005 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----CHHHHHHH
Q 006071 466 ADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG----HVEEALGR 541 (662)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 541 (662)
.+|...|++..+.| +...+..+...|...+++++|+.+|++..+.+ +...+..+...|.. + ++++|++.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888764 66777788888889999999999999998875 56777778888888 6 89999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHhc----cCCHHHHHHHHHHHhcCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 006071 542 IDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRDCI-IDLASYEKVLDALLA----AGKTLNAYSILFKI 612 (662)
Q Consensus 542 ~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 612 (662)
+++..+.+.......+...|.. .+++++|+.+++++++.++. ..+..+..++.+|.. .+++++|++++++.
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999876654445667777776 78999999999999998643 125666789999998 88999999999999
Q ss_pred HHcCCCCcHhhHHHHHHHHHhc-C-----CcchhHHHHHHhhhhcccc
Q 006071 613 MEKGGVTDWKSSDKLIAGLNQE-G-----NTKQADILSRMIRGEMSRG 654 (662)
Q Consensus 613 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~~ 654 (662)
.+.++ +..++..|..+|... | +.++|....++....+...
T Consensus 156 ~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 156 SSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 98833 334566788888764 3 7899987777766655433
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.96 E-value=8.8e-09 Score=88.02 Aligned_cols=162 Identities=9% Similarity=0.032 Sum_probs=98.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH-HH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES-YL 460 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 460 (662)
.+......+...|++++|...|+++.+..|.++..+..+..++...|++++|...++.+.... |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 345556667777888888888888777777777888888888888888888888887776543 244333222211 11
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHH
Q 006071 461 RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEAL 539 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 539 (662)
..+...+|...+++..+.. +.+...+..+...+...|++++|...|+++++..+.+ +...+..+..++...|+.++|+
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222234566666665432 1234555566666666666666666666666655443 2345555666666666666666
Q ss_pred HHHHHHH
Q 006071 540 GRIDLMM 546 (662)
Q Consensus 540 ~~~~~~~ 546 (662)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=3.7e-08 Score=91.62 Aligned_cols=154 Identities=13% Similarity=0.033 Sum_probs=74.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHH-HHHHHHHHHhcCCh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDM-FEVLIESYGKKGIV 107 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~ 107 (662)
.+...|++++|+..|+.+++.. |.++.++..+..++...|++++|...++++....+ +... .......+...++.
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHHHHHHHHHTS
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHHHHHHhhccc
Confidence 4445555555555555555554 45555555555555555555555555555554322 2221 11122223444455
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHTYNVMLWGFFLSLKLETAIRFFED 186 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 186 (662)
++|...+++..... +.+...+..+...+...|++++|+..|.++++..+.. +...+..+...+...|+.++|...+++
T Consensus 202 ~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 202 TPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp CHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 55555555554433 2344455555555555555555555555554432211 133444455555555555555544444
Q ss_pred H
Q 006071 187 M 187 (662)
Q Consensus 187 ~ 187 (662)
.
T Consensus 281 a 281 (287)
T 3qou_A 281 Q 281 (287)
T ss_dssp H
T ss_pred H
Confidence 3
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=3.4e-09 Score=87.57 Aligned_cols=139 Identities=10% Similarity=-0.044 Sum_probs=71.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTA 471 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 471 (662)
..|++++|+..++......+.++..+..+...|...|++++|.+.|+...+.++ -+..+|..+..+|.+.|++++|...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHH
Confidence 345555555555555544444444555555556666666666666655555432 2455555555556666666666666
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 006071 472 LDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRV-MKSMVEKGVKENLDLVAKILEALLMRG 533 (662)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 533 (662)
|++.++.. +-+...+..+...+.+.|++++|.+. ++++++..+. ++..|......+...|
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 65555432 11234455555555555555444333 3555554443 4444544444444444
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=9.8e-09 Score=96.78 Aligned_cols=187 Identities=11% Similarity=-0.016 Sum_probs=104.8
Q ss_pred cCChhHHHHHHHHHHhcCC-------CCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHHhHHHHH
Q 006071 393 NGQTGKAEIFFRQLMKKGV-------LDP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLI 456 (662)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~-------~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~ 456 (662)
.|++++|.+++++..+..+ ++. ..|...+..|...|++++|...+....+. +-.+ -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666666666554221 111 23445556667777777777777665442 1000 134666677
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC---CCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHH
Q 006071 457 ESYLRKGEPADAKTALDSMIEDGH---SPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-----NLDLVAKIL 526 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~ 526 (662)
.+|...|++++|+..+++.++... .+. ..++..+...|.. |++++|+..+++.++..... ...++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 777777777777777777654210 111 2345556666666 77777777777766542111 134556667
Q ss_pred HHHHhCCCHHHHHHHHHHHHhC----CCCCCH----HHHHHHHhccCCHHHHHHHHHHHhcCC
Q 006071 527 EALLMRGHVEEALGRIDLMMQS----GSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~----~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (662)
.+|...|++++|++.+++.+.. +..+.. ..++.++...|++++|...+++++ ..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence 7777777777777777766651 111111 112233345577777777777776 44
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=7.4e-08 Score=99.72 Aligned_cols=152 Identities=12% Similarity=0.049 Sum_probs=115.4
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 006071 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472 (662)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 472 (662)
.|++++|...++++.+..+.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3678889999999988888889999999999999999999999999998864 336788999999999999999999999
Q ss_pred HHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHh
Q 006071 473 DSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR---GHVEEALGRIDLMMQ 547 (662)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 547 (662)
++..+.. +.+...+..+...+...|++++|.+.++++.+..+. +...+..+..++... |++++|.+.+++.++
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998754 234677888888999999999999999999888665 677888899999999 999999999998887
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=3.8e-08 Score=101.85 Aligned_cols=155 Identities=9% Similarity=-0.071 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006071 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (662)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 112 (662)
.|++++|++.|+.+.+.. |.+..++..+..++...|++++|...+++..+..+. +...+..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999998876 778889999999999999999999999998887544 67888899999999999999999
Q ss_pred HHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 006071 113 IFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS---LKLETAIRFFEDMKS 189 (662)
Q Consensus 113 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 189 (662)
.|++..+.. +.+...+..+..++.+.|++++|.+.|++..+.. +.+...+..+...+... |++++|...+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988865 4567788889999999999999999999988764 23567778888888888 899999999988887
Q ss_pred CCC
Q 006071 190 RGI 192 (662)
Q Consensus 190 ~~~ 192 (662)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 643
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=5.6e-08 Score=91.59 Aligned_cols=130 Identities=12% Similarity=-0.041 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--cHH
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLIESYLRKGEPADAKTALDSMIEDGH---SP--ASS 485 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~ 485 (662)
+++.+..+|...|++++|...+++..+. |-.. ...++..+...|.. |++++|+..+++.++... .+ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 4555666666666666666666655431 1110 12456666677766 777777777777664210 00 134
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVK----EN-LDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
++..+...+...|++++|+..|+++++.... +. ...+..++.++...|++++|+..+++.+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5666677777888888888888877764111 11 2245556667777788888888888776
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.84 E-value=1.6e-06 Score=80.73 Aligned_cols=224 Identities=7% Similarity=-0.025 Sum_probs=166.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc-C-ChH
Q 006071 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK-G-EPA 466 (662)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 466 (662)
....+..++|+.+++.++..+|.+..+|+.-..++...| .+++++.+++.+...+.+ +..+|+.-...+.+. + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 344566678999999999999999999999998888888 599999999999987644 788888888777776 7 889
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC----
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQ--------TASRVMKSMVEKGVKENLDLVAKILEALLMRGH---- 534 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 534 (662)
+++.+++++.+.. +-+...|+.-...+...|.++ ++++.++++++.++. |...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 9999999999643 346677776665655555555 899999999999887 88889888888888776
Q ss_pred ---HHHHHHHHHHHHhCCCCCCH----HHHHHHHhccCCH--------------------HHHHHHHHHHhcCC-----C
Q 006071 535 ---VEEALGRIDLMMQSGSVPNF----DSLLSVLSEKGKT--------------------IAAVKLLDFCLGRD-----C 582 (662)
Q Consensus 535 ---~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~ 582 (662)
++++++.+++.+. ..|+. ..+...+.+.|+. .+........+... .
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 7899999988887 55653 2334455554443 22222222222221 0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006071 583 IIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV 618 (662)
Q Consensus 583 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 618 (662)
..++.....++++|...|+.++|.+.++.+.++-++
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 234566678999999999999999999998876554
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.84 E-value=2.2e-06 Score=79.88 Aligned_cols=177 Identities=9% Similarity=0.047 Sum_probs=130.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc-C-
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG-KLNHARCILLDMPKKGVQWDEDMFEVLIESYGKK-G- 105 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 105 (662)
++...+..++|+++++.++..+ |.+..+|+.-..++...| .+++++.+++.+....++ +..+|+.-...+... +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 4455667788999999999987 788889998888888888 589999999998887665 788888887777776 6
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChh--------HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM--------MAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK- 176 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~- 176 (662)
++++++..++.+.+.. +.|..+|+-..-++.+.|.++ ++++.++++++..+ -|...|+.....+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc
Confidence 8888999999988765 467777777666666666665 78888888877643 367777777666666665
Q ss_pred ------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006071 177 ------LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (662)
Q Consensus 177 ------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 211 (662)
++++++.++++....+. |...|+-+-..+.+.|.
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 56777777776665433 66667665555555444
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.77 E-value=1.4e-07 Score=84.66 Aligned_cols=185 Identities=14% Similarity=-0.046 Sum_probs=105.4
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHhhCCCCCC----------------
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNL-------IRGHSKEGNPDSAFEIVKIMGRRGVPRD---------------- 448 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------- 448 (662)
..++...|...|.++....|.....|..+ ...+...++..+++..+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999999999999999988 5666666666666655555443 2222
Q ss_pred ------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HH
Q 006071 449 ------ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--LD 520 (662)
Q Consensus 449 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~ 520 (662)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.|++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 1223345556666677777777666665422 433344444445666666666666665432221 110 12
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHhccCCHHHHHHHHHHHhcCC
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-F----DSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~----~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (662)
.+..+..++...|++++|+..|++....+..|. . ...+.++.+.|+.++|..+|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344455556666666666666665554332243 1 123334445555555555555555543
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=2.5e-07 Score=83.15 Aligned_cols=189 Identities=7% Similarity=-0.114 Sum_probs=135.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCHHhHHHH-------HHHHHhcCChHHHHHHHHhcccC------------CC-----
Q 006071 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKM-------IEILGRVGKLNHARCILLDMPKK------------GV----- 87 (662)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~------------~~----- 87 (662)
..+++..|.+.|..+.+.+ |.....|..+ ..++...++..++...++.-... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999999998 8899999988 67777777777777666665541 11
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcC--HH
Q 006071 88 ---QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPT--RH 162 (662)
Q Consensus 88 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~ 162 (662)
.........+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 0113445566777888899999999998887644 433255566667888899999998888654431 111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 006071 163 TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLD--VVTYNTMINGYNRFKKMDEAEKLFAEMKEK 225 (662)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 225 (662)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 556667778888888888888888875432143 345566677778888888888888888775
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=7.6e-07 Score=78.70 Aligned_cols=93 Identities=8% Similarity=-0.094 Sum_probs=68.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (662)
..+..+...+...|++++|...+++.. .|+...+..+...+...|++++|+..++++++..+. +...+..++.+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 345556677777888888888777653 456677777777778888888888888887776544 566777777788
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 006071 530 LMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~ 547 (662)
...|++++|++.+++..+
T Consensus 82 ~~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALI 99 (213)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHH
Confidence 888888888888877776
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=5.5e-08 Score=79.69 Aligned_cols=97 Identities=13% Similarity=0.051 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 006071 518 NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVL 593 (662)
Q Consensus 518 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (662)
+...+..+...+.+.|++++|+..|++++. ..|+ +..++.++...|++++|+..|+++++..|. ++..|..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 345667788888899999999999998887 4444 345667777889999999999988888654 455566789
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 594 DALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 594 ~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
.+|.+.|++++|++.|++.+....
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999887654
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=3.1e-06 Score=79.04 Aligned_cols=161 Identities=7% Similarity=-0.010 Sum_probs=114.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 006071 454 CLIESYLRKGEPADAKTALDSMIEDG-HSPASS----LFRSVMESLFEDGRVQTASRVMKSMVEKGVK-EN----LDLVA 523 (662)
Q Consensus 454 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 523 (662)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..++++++.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888899999999999988632 122221 2223555667778999999999999885222 22 33678
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHh----C-CCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCC----C-hhhH
Q 006071 524 KILEALLMRGHVEEALGRIDLMMQ----S-GSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII----D-LASY 589 (662)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~-~~~~ 589 (662)
.++.+|...|++++|+..++++++ . +..+. ...++..|...|++++|+.+++++++..... . ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999988874 1 11111 2346667778999999999999888643221 1 5667
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 006071 590 EKVLDALLAAGK-TLNAYSILFKIME 614 (662)
Q Consensus 590 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 614 (662)
..++.++.+.|+ +++|.+.+++.+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 789999999994 6999999988664
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=1.6e-06 Score=80.94 Aligned_cols=161 Identities=11% Similarity=0.012 Sum_probs=100.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCHH------HHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC----HHhHHHH
Q 006071 387 IQHLCHNGQTGKAEIFFRQLMKKGVLDPV------AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-RD----ADAYICL 455 (662)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 455 (662)
+..+...|++++|..+++......+.++. .+..+...+...+++++|...++.+...... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566777777777777777765432222 2334566666667778888887777663211 12 2357777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 006071 456 IESYLRKGEPADAKTALDSMIED-----GHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKEN-LDLVAK 524 (662)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 524 (662)
..+|...|++++|...++++.+. +..+. ..++..+...|...|++++|...+++.++. +..+. ...|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777778888887777777631 11111 235566666777777777777777776654 11111 456666
Q ss_pred HHHHHHhCC-CHHHHHHHHHHHHh
Q 006071 525 ILEALLMRG-HVEEALGRIDLMMQ 547 (662)
Q Consensus 525 l~~~~~~~g-~~~~A~~~~~~~~~ 547 (662)
++.++...| .+++|++.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 777777777 35777777766553
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=3.2e-07 Score=72.82 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=54.8
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (662)
...+...+..+.+.|++++|+..|++.++..+. +..+|..+..+|...|++++|+..|++..+.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 344555555555566666666666555554332 45555555555555666666666665555543 2345555555566
Q ss_pred HHHcCChhHHHHHHHHHHhC
Q 006071 136 ILRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~ 155 (662)
+...|++++|+..|++.++.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 66666666666666655553
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=3e-07 Score=72.99 Aligned_cols=112 Identities=14% Similarity=0.082 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006071 299 PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDM 378 (662)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (662)
|.....+...+..+.+.|++++|+..|++.++.. |.+...|..+..+|.+.|++++|+..|++.++.. + .
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p-----~ 79 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD----S-----K 79 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-----T
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh----h-----h
Confidence 3333444444445555555555555555544432 3334444444444444444544444444443322 1 1
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (662)
+...|..+..++...|++++|...|++..+..|.+..+...+
T Consensus 80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 223344444444444444444444444444444444444333
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=2.7e-06 Score=75.13 Aligned_cols=129 Identities=9% Similarity=-0.063 Sum_probs=95.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 006071 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (662)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (662)
.+..+...+...|++++|...|++.. .++..++..+...+...|++++|...|+...+.. +.+...|..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556677778888888888888775 3467788888888888888888888888887754 456677888888888
Q ss_pred HcCChhHHHHHHHHHHhCCCCc---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006071 138 RRGRYMMAKRYFNKMLSEGIEP---------------TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (662)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 191 (662)
..|++++|+..|++..+..... ....+..+..++...|++++|...|+.+.+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887653211 12556667777777888888888888877663
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=6.9e-06 Score=76.61 Aligned_cols=162 Identities=10% Similarity=-0.012 Sum_probs=85.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CCC--HHhHH
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDP------VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV---PRD--ADAYI 453 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~ 453 (662)
..+..+...|++++|...+....+..+... ..+..+...+...|++++|...++....... .+. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344455566666666666666655443222 1233344555566666677666666654211 111 33566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH---cC-CCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CHHHH
Q 006071 454 CLIESYLRKGEPADAKTALDSMIE---DG-HSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKG----VKE-NLDLV 522 (662)
Q Consensus 454 ~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~ 522 (662)
.+...|...|++++|...++++.+ .. ..+ ...++..+...|...|++++|...+++.++.. ... -...|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666666666666666666666552 11 011 11355555556666666666666666655431 000 13445
Q ss_pred HHHHHHHHhCCCHHHH-HHHHHHHH
Q 006071 523 AKILEALLMRGHVEEA-LGRIDLMM 546 (662)
Q Consensus 523 ~~l~~~~~~~g~~~~A-~~~~~~~~ 546 (662)
..++.+|...|++++| ...+++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5566666666666666 44455443
No 129
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.65 E-value=2.1e-05 Score=72.97 Aligned_cols=220 Identities=8% Similarity=-0.112 Sum_probs=155.4
Q ss_pred HhcCChh-HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 391 CHNGQTG-KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN----------PDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 391 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
.+.|.++ +|+.+++.+...+|.+..+|+.--..+...+. +++++.+++.+...+++ +..+|+.-...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3445544 79999999999999999998876666655444 57888888888876543 788888888888
Q ss_pred HhcCC--hHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----
Q 006071 460 LRKGE--PADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR-VQTASRVMKSMVEKGVKENLDLVAKILEALLMR---- 532 (662)
Q Consensus 460 ~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 532 (662)
...+. +++++.+++.+.+.. +-|...|+.-...+...|. ++++++.++.+++.++. |...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 88774 789999999999754 3467778777777777887 68999999999998877 777887766666554
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHH----HHHHHHhcc-----------CCHHHHHHHHHHHhcCCCCCChh
Q 006071 533 ----------GHVEEALGRIDLMMQSGSVPNFD----SLLSVLSEK-----------GKTIAAVKLLDFCLGRDCIIDLA 587 (662)
Q Consensus 533 ----------g~~~~A~~~~~~~~~~~~~p~~~----~~~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~ 587 (662)
+.++++++.+++... ..|+.. ..-..+... +.++++++.++++++..|.. ..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred ccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-ch
Confidence 457788888888776 455532 222333332 35678888888888776543 22
Q ss_pred hHHHHHH---HHHhcCCHHHHHHHHHHHHHcC
Q 006071 588 SYEKVLD---ALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 588 ~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
.+..++. .+-..|..++..+.+.++.+..
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 2222221 1224677778888888877653
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.65 E-value=8.7e-08 Score=78.51 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=50.3
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 006071 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134 (662)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 134 (662)
+..++..+...+.+.|++++|...|+++....+. +...|..+..+|...|++++|+..|+++.+.. |.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 3444555555555555555555555555544332 44555555555555555555555555555443 233444555555
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 006071 135 LILRRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 135 ~~~~~g~~~~A~~~~~~~~~ 154 (662)
+|...|++++|+..|++.++
T Consensus 113 ~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555544
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.65 E-value=1.5e-07 Score=80.41 Aligned_cols=123 Identities=13% Similarity=0.123 Sum_probs=102.9
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHH-HHhcCCh-
Q 006071 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES-YGKKGIV- 107 (662)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 107 (662)
+...|+++.|+..|+.+.+.. |.++.+|..+..++...|++++|...|++.....+. +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcc
Confidence 356789999999999999887 788999999999999999999999999998876543 67788888888 7788998
Q ss_pred -hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006071 108 -QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156 (662)
Q Consensus 108 -~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 156 (662)
++|...|+.+.+.. +.+...+..+...+...|++++|...|++..+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999998865 4567888889999999999999999999998864
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=5.3e-07 Score=78.97 Aligned_cols=155 Identities=13% Similarity=-0.075 Sum_probs=79.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh----CCCC-CCHHhHHHHHHHHHhcCChH
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR----RGVP-RDADAYICLIESYLRKGEPA 466 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~ 466 (662)
..|++++|...++.+.........++..+...+...|++++|...+++... .+.. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 356666666644444332234555666666666667777777666666544 1111 12345555666666666666
Q ss_pred HHHHHHHHHHHc----CCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHhCCCH
Q 006071 467 DAKTALDSMIED----GHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKG--V-KEN--LDLVAKILEALLMRGHV 535 (662)
Q Consensus 467 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~g~~ 535 (662)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++..+.. . .+. ...+..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666665532 1011 12234445555666666666666666655331 1 100 12234455555566666
Q ss_pred HHHHHHHHHHH
Q 006071 536 EEALGRIDLMM 546 (662)
Q Consensus 536 ~~A~~~~~~~~ 546 (662)
++|.+.+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66665555444
No 133
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.62 E-value=3.2e-05 Score=71.76 Aligned_cols=219 Identities=10% Similarity=-0.014 Sum_probs=159.7
Q ss_pred cCCcH-HHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCHHHH
Q 006071 349 KAEMY-DRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQ----------TGKAEIFFRQLMKKGVLDPVAF 417 (662)
Q Consensus 349 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~ 417 (662)
+.|.+ ++|+.+++.++..+ |. +...|+.--..+...+. +++++.+++.+....|.+..+|
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n----P~-----~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW 111 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN----PD-----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW 111 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC----TT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC----ch-----hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 34443 46778877775433 11 22334433333322222 6789999999999999999999
Q ss_pred HHHHHHHHhcCC--hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 006071 418 NNLIRGHSKEGN--PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGE-PADAKTALDSMIEDGHSPASSLFRSVMESL 494 (662)
Q Consensus 418 ~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (662)
+.-..++...++ +++++.+++.+.+.... |...|+.-...+...|. ++++++.++++++.. +-|...|+.....+
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll 189 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 999888888884 89999999999987544 88899888888888888 599999999999865 34566776666555
Q ss_pred Hhc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHhCC
Q 006071 495 FED--------------GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR-----------GHVEEALGRIDLMMQSG 549 (662)
Q Consensus 495 ~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~ 549 (662)
... +.++++++.+..++...+. |...|+.+-..+.+. +.++++++.++++.+
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle-- 266 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE-- 266 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--
Confidence 544 4588999999999998877 888887666656555 457899999999998
Q ss_pred CCCCH--HH--H---HHHHhccCCHHHHHHHHHHHhcCC
Q 006071 550 SVPNF--DS--L---LSVLSEKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 550 ~~p~~--~~--~---~~~~~~~g~~~~A~~~~~~~~~~~ 581 (662)
..|+. .. + ...+...|..+++..++.+..+.+
T Consensus 267 ~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 267 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 66662 21 1 112234678889999999888875
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=9.9e-07 Score=74.24 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=44.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
.+...|+++.|+..|+.+.+.. |.+..++..++.++...|++++|...+++..+..+. +..++..+...+...|+++
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~ 98 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 98 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhccHH
Confidence 4444555555555555555443 444555555555555555555555555554443321 3444444555555555555
Q ss_pred HHHHHHHHHHH
Q 006071 109 ESVKIFDIMKQ 119 (662)
Q Consensus 109 ~A~~~~~~~~~ 119 (662)
+|...|+++.+
T Consensus 99 ~A~~~~~~a~~ 109 (166)
T 1a17_A 99 AALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=2e-06 Score=72.33 Aligned_cols=127 Identities=16% Similarity=0.059 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLF 495 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 495 (662)
.+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555555555555555555555432 2244555555555555566666665555555432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHH
Q 006071 496 EDGRVQTASRVMKSMVEKGVKENLDLVAK--ILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~ 545 (662)
..|++++|...++++.+..+. +...+.. .+..+...|++++|++.+.+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 566666666666665555333 3333322 222244555555555555443
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.58 E-value=1.2e-07 Score=90.41 Aligned_cols=151 Identities=11% Similarity=-0.072 Sum_probs=105.0
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--------------HHhHHHHHHHH
Q 006071 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD--------------ADAYICLIESY 459 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 459 (662)
+++++|...++......+.+...+..+...+...|++++|...|+...+...... ...|..+..+|
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444443344667788888888888999999999988887543221 46777777788
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH-
Q 006071 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA- 538 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A- 538 (662)
.+.|++++|+..+++.++.. +.+...+..+..++...|++++|+..|+++++..+. +...+..+..++...|++++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877643 234566777777777788888888888887777655 566677777777777777777
Q ss_pred HHHHHHHH
Q 006071 539 LGRIDLMM 546 (662)
Q Consensus 539 ~~~~~~~~ 546 (662)
..++++|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555554
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=2e-06 Score=79.54 Aligned_cols=100 Identities=16% Similarity=0.041 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006071 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILI 344 (662)
Q Consensus 265 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 344 (662)
+...+..+...+...|++++|...|++.+.. .|.+...+..+..++.+.|++++|...++...+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3455566666677777777777777777664 45567777777777777777777777777776653 44566677777
Q ss_pred HHHHcCCcHHHHHHHHHHHHHhh
Q 006071 345 ENFCKAEMYDRAIKLLDKLVEKE 367 (662)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~ 367 (662)
.+|...|++++|+..|+.+++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777777777777777776554
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=4.3e-07 Score=74.54 Aligned_cols=110 Identities=9% Similarity=-0.020 Sum_probs=78.0
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006071 42 FFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLG 121 (662)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 121 (662)
.|+.++..+ |.+...+..+...+...|++++|...|+......+. +...|..+..++...|++++|+..|+++....
T Consensus 9 ~~~~al~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEIS--SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCC--HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555544 556667777777777788888888888777765443 67777777777777788888888887777654
Q ss_pred CCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006071 122 VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (662)
+.++..+..+..++...|++++|+..|++.++.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666777777777788888888877777654
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.55 E-value=1.7e-05 Score=73.85 Aligned_cols=166 Identities=11% Similarity=-0.010 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC-----HHhHHHHHHHHHHcCChhHHHHHHHHHHhCCC---CcC--HH
Q 006071 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERS-----VKSYDALFKLILRRGRYMMAKRYFNKMLSEGI---EPT--RH 162 (662)
Q Consensus 93 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 162 (662)
.+...+..+...|++++|.+.+....+.....+ ...+..+...+...|++++|+..+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344445555666666666666665554321111 01233344455556666666666666654211 111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC-CC--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHC----CCCC-CH
Q 006071 163 TYNVMLWGFFLSLKLETAIRFFEDMKS---RGI-SL--DVVTYNTMINGYNRFKKMDEAEKLFAEMKEK----NIEP-TV 231 (662)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 231 (662)
+++.+...|...|++++|...++++.+ ... .+ ...++..+..+|...|++++|...+++.... +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 556666666666666666666666552 110 11 1145666666666677777777666665432 1111 13
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHHh
Q 006071 232 ISYTTMIKGYVAVERADDA-LRIFDEMK 258 (662)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 258 (662)
.+|..+..+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4566666667777777666 55555543
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=8.5e-07 Score=77.64 Aligned_cols=121 Identities=11% Similarity=0.058 Sum_probs=61.9
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccC----CC-CCCHHHHHHHHHHHHhcC
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK----GV-QWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g 105 (662)
...|++++|.+.++.+... .+....++..+..++...|++++|...+++.... +. .....++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3456777777755544332 1244556666666667777777776666665431 11 112334555555666666
Q ss_pred ChhHHHHHHHHHHHc----CCC--cCHHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006071 106 IVQESVKIFDIMKQL----GVE--RSVKSYDALFKLILRRGRYMMAKRYFNKML 153 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~----g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 153 (662)
++++|...+++..+. +.. .....+..+...+...|++++|...+++..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666666555442 100 112334455555555566666655555543
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=1.5e-06 Score=82.65 Aligned_cols=126 Identities=11% Similarity=0.002 Sum_probs=86.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 006071 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--------------LDLVAKILEALLMRGHVEEALGRIDLMMQSGS 550 (662)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 550 (662)
..+..+...+...|++++|+..|+++++..+... ...|..+..+|...|++++|+..++++++ .
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--L 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 3455555566666666666666666666544422 46677788888888888888888888877 3
Q ss_pred CCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 006071 551 VPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA-YSILFKIM 613 (662)
Q Consensus 551 ~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 613 (662)
.|+ +..++.++...|++++|+..|+++++..+. +...+..++.++.+.|++++| .+.++++.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 234566677788888888888888877543 345566788888888888888 44555554
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=2.1e-06 Score=68.62 Aligned_cols=119 Identities=12% Similarity=-0.000 Sum_probs=66.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 006071 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134 (662)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 134 (662)
+...+..++..+...|++++|...+++.....+. +...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3445555556666666666666666665544322 45555566666666666666666666655543 234555566666
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006071 135 LILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK 176 (662)
Q Consensus 135 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 176 (662)
.+...|++++|...|++..+..+ .+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666655421 244445555555555444
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.52 E-value=8.9e-07 Score=72.62 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
.+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|+..|++++..++. +...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 33344444444444444444444444322 112333444444444444444444444444444333 2333344444444
Q ss_pred hCCCHHHHHHHHHHHHh
Q 006071 531 MRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 531 ~~g~~~~A~~~~~~~~~ 547 (662)
..|++++|++.|++.++
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444443
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=4.1e-07 Score=84.19 Aligned_cols=97 Identities=11% Similarity=-0.021 Sum_probs=57.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 006071 231 VISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLG 310 (662)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (662)
...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|...+++.++. .|.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3445555555666666666666666655432 234555666666666666666666666666553 4555666666666
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 006071 311 VQCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 311 ~~~~~g~~~~a~~~~~~~~~ 330 (662)
++...|++++|...|....+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=1.7e-06 Score=73.69 Aligned_cols=120 Identities=8% Similarity=0.080 Sum_probs=55.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH-HHhcCCh--HHH
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES-YLRKGEP--ADA 468 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 468 (662)
..|++++|...++......+.++.++..+..+|...|++++|...|+.+.+.. +.+...+..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34555555555555555555555555555555555555555555555554432 1234444444444 4444444 555
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 469 KTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
...++++.+.. +.+...+..+...+...|++++|...++++++.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555444322 112333334444444444444444444444443
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.52 E-value=2.4e-06 Score=68.57 Aligned_cols=118 Identities=14% Similarity=0.018 Sum_probs=78.5
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
+.+...+..++..+...|++++|...|++..+.... +..++..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 445567777777777777888887777777665433 56677777777777777777777777777653 3456677777
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL 173 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 173 (662)
..++...|++++|...|++..+... .+...+..+...+..
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 7777777777777777777765422 233344444444443
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=3.2e-06 Score=66.88 Aligned_cols=114 Identities=14% Similarity=0.126 Sum_probs=76.6
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (662)
...+..++..+...|++++|..+++++.+..+ .+..++..+...+...|++++|...|+.+.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 55667777777777777777777777766543 256677777777777777777777777776654 3456677777777
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006071 136 ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF 172 (662)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 172 (662)
+...|++++|...|+++....+ .+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 7777778788777777766532 24444444444443
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=3.6e-06 Score=67.50 Aligned_cols=98 Identities=11% Similarity=0.012 Sum_probs=60.7
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (662)
+...+..+...+...|++++|...|+.+....+.+..++..+..++...|++++|...++.+.+.. +.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666666666666666666665542 2245556666666
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 006071 459 YLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~ 477 (662)
+...|++++|...+++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666654
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.49 E-value=5.4e-06 Score=65.49 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhc
Q 006071 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED 497 (662)
Q Consensus 418 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 497 (662)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 333333444444444444444333321 1123333334444444444444444444433321 11223333333334444
Q ss_pred CCHHHHHHHHHHHHH
Q 006071 498 GRVQTASRVMKSMVE 512 (662)
Q Consensus 498 g~~~~a~~~~~~~~~ 512 (662)
|++++|...++++.+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444433
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=2.3e-06 Score=68.39 Aligned_cols=118 Identities=8% Similarity=0.023 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 006071 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWG 170 (662)
Q Consensus 91 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 170 (662)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..... +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555555666666666666666655543 2345555556666666666666666666655542 2234455555556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006071 171 FFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (662)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 211 (662)
+...|++++|...++...+... .+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666555422 244555555555555544
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=9.7e-07 Score=71.97 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=54.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHH
Q 006071 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (662)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 133 (662)
.+...+..+...+...|++++|...|+.....++. +...|..+..++...|++++|...|+...... +.++..+..+.
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 34444555555555566666666666555554332 45555555555555566666666665555543 23444555555
Q ss_pred HHHHHcCChhHHHHHHHHHHh
Q 006071 134 KLILRRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 134 ~~~~~~g~~~~A~~~~~~~~~ 154 (662)
.++...|++++|...|++.++
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555556666666665555544
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=5.5e-06 Score=65.76 Aligned_cols=95 Identities=15% Similarity=0.067 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
.|..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..++++++.++. +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 44444555555555555555555555432 123444555555555555555555555555555443 3444555555555
Q ss_pred hCCCHHHHHHHHHHHHh
Q 006071 531 MRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 531 ~~g~~~~A~~~~~~~~~ 547 (662)
..|++++|++.+++.++
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555544
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=7.1e-07 Score=77.76 Aligned_cols=144 Identities=9% Similarity=-0.019 Sum_probs=73.9
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---------------HHhHHHHHHH
Q 006071 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD---------------ADAYICLIES 458 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~ 458 (662)
|+++.+.+.++......+.....+..+...+...|++++|...|+.......... ...|..+..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 97 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97 (198)
T ss_dssp ----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444332222223344566667777777777777777777766421111 1455555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (662)
|...|++++|+..+++.++.. +.+...+..+..++...|++++|...|+++++..+. +...+..+..++...++.+++
T Consensus 98 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 98 YNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655432 223444555555555666666666666665555433 444455555555544444444
Q ss_pred H
Q 006071 539 L 539 (662)
Q Consensus 539 ~ 539 (662)
.
T Consensus 176 ~ 176 (198)
T 2fbn_A 176 D 176 (198)
T ss_dssp -
T ss_pred H
Confidence 3
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.39 E-value=5.4e-06 Score=65.79 Aligned_cols=95 Identities=11% Similarity=-0.029 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 006071 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (662)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (662)
.|......+.+.|++++|...|++..+..+. +...|..+..++...|++++|...|++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4444444455555555555555554443322 34445555555555555555555555544432 223444444555555
Q ss_pred HcCChhHHHHHHHHHHh
Q 006071 138 RRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 138 ~~g~~~~A~~~~~~~~~ 154 (662)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555554443
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.37 E-value=3.2e-06 Score=68.81 Aligned_cols=92 Identities=12% Similarity=-0.053 Sum_probs=83.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 105 (662)
+...+...|++++|+..|+.+...+ |.++..|..+..++...|++++|...|++....++. ++..+..+..++...|
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 4557788999999999999999987 789999999999999999999999999999887654 7788999999999999
Q ss_pred ChhHHHHHHHHHHHc
Q 006071 106 IVQESVKIFDIMKQL 120 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~ 120 (662)
++++|...|+...+.
T Consensus 101 ~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 101 DLDGAESGFYSARAL 115 (142)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998875
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=5e-06 Score=65.98 Aligned_cols=96 Identities=10% Similarity=0.109 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CcC----HHhHHH
Q 006071 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGV--ERS----VKSYDA 131 (662)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~~~~~ 131 (662)
++..++..+.+.|++++|+..|++.++..+. +..+|..+..+|...|++++|+..|+...+... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3344444444444444444444444443322 344444444444444444444444444443210 000 123444
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 006071 132 LFKLILRRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 132 l~~~~~~~g~~~~A~~~~~~~~~ 154 (662)
+..++...|++++|++.|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555544
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=1.2e-05 Score=62.57 Aligned_cols=97 Identities=18% Similarity=0.080 Sum_probs=52.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 006071 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (662)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (662)
..+..++..+...|++++|...|+......+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34445555555555555555555555543322 44555555555555555555555555555443 23445555555555
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 006071 137 LRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~ 155 (662)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5566666666666555543
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=1.3e-06 Score=76.16 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 006071 94 FEVLIESYGKKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 94 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 119 (662)
+..+...+...|++++|...|++..+
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555554444
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=9.8e-06 Score=67.89 Aligned_cols=96 Identities=8% Similarity=-0.028 Sum_probs=45.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (662)
..+..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|+..++++++.++. +...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444455555555555555555554432 113344444444455555555555555555444333 344444445555
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 006071 530 LMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~ 547 (662)
...|++++|++.+++.++
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 555555555555444443
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=4.2e-06 Score=64.62 Aligned_cols=98 Identities=8% Similarity=-0.015 Sum_probs=46.9
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCc--CHHhHHHH
Q 006071 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVER--SVKSYDAL 132 (662)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~l 132 (662)
+...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 3444444455555555555555555554443222 34444444455555555555555555554432 12 34444445
Q ss_pred HHHHHHc-CChhHHHHHHHHHHh
Q 006071 133 FKLILRR-GRYMMAKRYFNKMLS 154 (662)
Q Consensus 133 ~~~~~~~-g~~~~A~~~~~~~~~ 154 (662)
..++... |++++|.+.++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 5555555 555555555555544
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.32 E-value=3.4e-06 Score=66.26 Aligned_cols=94 Identities=12% Similarity=-0.107 Sum_probs=62.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 23 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
.......+...|++++|+..|+.+++.. |.++.+|..+..++...|++++|+..|++..+..+. +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3444556666777777777777776665 566667777777777777777777777766665443 5566666666666
Q ss_pred hcCChhHHHHHHHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~ 119 (662)
..|++++|...|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66777777777766655
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.32 E-value=1.6e-05 Score=64.12 Aligned_cols=100 Identities=16% Similarity=0.041 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006071 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILI 344 (662)
Q Consensus 265 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 344 (662)
+...+..+...+...|++++|...|+..+.. .|.+..++..+..++...|+++.|...++...+.. +.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 4455555666666666666666666666554 34455666666666666666666666666665543 34455666666
Q ss_pred HHHHcCCcHHHHHHHHHHHHHhh
Q 006071 345 ENFCKAEMYDRAIKLLDKLVEKE 367 (662)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~ 367 (662)
.+|...|++++|+..|+.+++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHC
Confidence 66666666666666666665544
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=2.1e-05 Score=61.20 Aligned_cols=95 Identities=16% Similarity=0.017 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 33444444444444444444444444321 112333444444444445555555555444444332 3344444444444
Q ss_pred hCCCHHHHHHHHHHHHh
Q 006071 531 MRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 531 ~~g~~~~A~~~~~~~~~ 547 (662)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=7.7e-06 Score=64.18 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=41.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 006071 455 LIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (662)
Q Consensus 455 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (662)
+...+.+.|++++|...+++.++.. +.+...+..+..++...|++++|+..++++++.++. +...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3344444455555555555444322 113334444444444455555555555554444333 33444444444445555
Q ss_pred HHHHHHHHHHHHh
Q 006071 535 VEEALGRIDLMMQ 547 (662)
Q Consensus 535 ~~~A~~~~~~~~~ 547 (662)
+++|+..+++.++
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=1.1e-05 Score=63.95 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCC----HHhHHHHH
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV--PRD----ADAYICLI 456 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~ 456 (662)
+..+...+.+.|++++|+..|+++++..|.++.+|..+..+|...|++++|+..++...+.+. .++ ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 444555555666666666666666665555666666666666666666666666655543210 001 12344444
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 006071 457 ESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~ 477 (662)
.++...|++++|+..|++.++
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555555555443
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=2.9e-05 Score=77.20 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHhcCChhHHHHHHHHHh
Q 006071 388 QHLCHNGQTGKAEIFFRQLMKKGVLDP-----------------VAFNNLIRGHSKEGNPDSAFEIVKIMG 441 (662)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 441 (662)
..+...|++++|.+.|..+.+..+... .++..++..|...|++++|.+++..+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345566777777777777666552211 124445555555555555555554443
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.28 E-value=1.6e-05 Score=66.52 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=63.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
...+..+...+...|++++|+..|++..+..+.+...+..+..+|...|++++|+..++...+.. +.+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455566666666777777777777766666666666666666666777777777666666643 22456666666666
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 006071 460 LRKGEPADAKTALDSMIED 478 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~ 478 (662)
...|++++|...|++.++.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666666643
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=7.7e-06 Score=68.26 Aligned_cols=55 Identities=15% Similarity=-0.095 Sum_probs=30.8
Q ss_pred HHhccCCHHHHHHHHHHHhcCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 560 VLSEKGKTIAAVKLLDFCLGRDCI-----IDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
.+...|++++|..+++++++.... .....+..++..+...|++++|.+.+++...
T Consensus 98 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 98 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 334455555555555544432100 0133455677777777888888877777654
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.23 E-value=1.6e-05 Score=61.25 Aligned_cols=98 Identities=8% Similarity=-0.013 Sum_probs=66.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--CHHhHHHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR--DADAYICLIE 457 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 457 (662)
...+..+...+...|++++|...++++.+..+.+..++..+..++...|++++|...++...+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34555666666777777777777777777666667777777777777777777777777766642 22 4566666677
Q ss_pred HHHhc-CChHHHHHHHHHHHHc
Q 006071 458 SYLRK-GEPADAKTALDSMIED 478 (662)
Q Consensus 458 ~~~~~-~~~~~a~~~~~~~~~~ 478 (662)
++... |++++|.+.+++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 77777 7777777777776654
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.22 E-value=2.1e-05 Score=63.35 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=53.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
...+..+...+...|+++.|...|+......+.++.++..+..++...|++++|...++...+.+ +.+...+..+..++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 33445555555555666666666666555555555555555555555556665555555555533 22445555555555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 006071 460 LRKGEPADAKTALDSMIE 477 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~ 477 (662)
...|++++|...+++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555543
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=4.2e-05 Score=62.50 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=43.7
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006071 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAK 524 (662)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 524 (662)
...+..+...+...|++++|...+++..+. .|+ ...+..+...+...|++++|+..+++.++..+. +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 334444444444444444444444444432 122 233444444444455555555555554444332 3444444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHh
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+..++...|++++|++.+++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555554444
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=4.4e-05 Score=75.91 Aligned_cols=198 Identities=10% Similarity=-0.022 Sum_probs=113.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCH---------------HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDR---------------ETHLKMIEILGRVGKLNHARCILLDMPKKGVQW- 89 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~- 89 (662)
-.+.+...|++++|++.|..+++..+...+. .++..++.+|...|++++|.+.+..+.+.-...
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3556778899999999999998865222221 236677788888888888888877765421111
Q ss_pred CH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCc-CHHhHHHHHHHHHHcCChhHHHHHHHHHHhC--CC-
Q 006071 90 DE----DMFEVLIESYGKKGIVQESVKIFDIMKQL----GVER-SVKSYDALFKLILRRGRYMMAKRYFNKMLSE--GI- 157 (662)
Q Consensus 90 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~- 157 (662)
+. .+.+.+...+...|+++.|..++...... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 12222333334457777777777665432 1111 2345666677777777777777777666432 11
Q ss_pred -Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006071 158 -EP-TRHTYNVMLWGFFLSLKLETAIRFFEDMKSR----GISLD--VVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 158 -~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
.+ ...++..++..|...|++++|..+++..... +.++. ...+..+...+...|++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 1335556666666667777777666665432 11111 2334444455556666666665555443
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.19 E-value=9.2e-06 Score=64.80 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=51.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CcC----HHhHH
Q 006071 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGV--ERS----VKSYD 130 (662)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~~~~ 130 (662)
..+..++..+...|++++|...|++.....+. +..++..+...+...|++++|...++.+.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34455555555555666666555555544322 445555555555555566666555555544321 011 44455
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhC
Q 006071 131 ALFKLILRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 131 ~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (662)
.+..++...|++++|...|++....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555555556666666655555543
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.18 E-value=4.9e-05 Score=60.40 Aligned_cols=92 Identities=12% Similarity=-0.070 Sum_probs=57.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC---HHHHHHHHH
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDR---ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD---EDMFEVLIE 99 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 99 (662)
+...+...|++++|+..|+.+.+.. |.++ .++..+..++...|++++|...|+.+.+..+. + ..++..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 4445566677777777777776654 3344 46666666666777777777777666654332 2 445556666
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 006071 100 SYGKKGIVQESVKIFDIMKQL 120 (662)
Q Consensus 100 ~~~~~g~~~~A~~~~~~~~~~ 120 (662)
++...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666554
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=9.6e-05 Score=60.30 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 006071 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN----AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMK 307 (662)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 307 (662)
..+..+...+...|++++|...|++.... .|+ ...+..+..++...|++++|...+++.... .|.+...+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHH
Confidence 34444444445555555555555554443 233 344444455555555555555555555543 3334455555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 006071 308 LLGVQCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~ 330 (662)
+..++...|++++|...|++...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=1.3e-05 Score=63.96 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=90.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCC--CC----HHHHHHH
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQ--WD----EDMFEVL 97 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 97 (662)
..+...+...|+++.|+..|+.+.+.. |.++.++..++.++...|++++|...+++.....+. ++ ..++..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 445667888999999999999999887 778999999999999999999999999998765432 12 6788889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 006071 98 IESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (662)
Q Consensus 98 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (662)
...+...|++++|...|+.+.+.. |+...+..+....
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 999999999999999999998854 5666655554443
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=7.4e-06 Score=81.94 Aligned_cols=118 Identities=9% Similarity=-0.055 Sum_probs=92.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
.+...|++++|++.|+.+++.. |.+..+|..+..++.+.|++++|...+++..+..+. +..++..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 4567889999999999999887 778899999999999999999999999998887554 6788888999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHH--HHHcCChhHHHHHHH
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKL--ILRRGRYMMAKRYFN 150 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 150 (662)
+|.+.|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999988764 2344455555555 777888888888887
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=2.1e-05 Score=65.63 Aligned_cols=59 Identities=17% Similarity=0.012 Sum_probs=44.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006071 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
++.++...|++++|+..++++++.++ .+...|..++.+|...|++++|++.+++.+...
T Consensus 69 la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 69 MSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 45566677888888888888877653 345566678888888888888888888888764
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.10 E-value=3.5e-05 Score=76.73 Aligned_cols=119 Identities=11% Similarity=-0.057 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--------------LDLVAKILEALLMRGHVEEALGRIDLMMQSGSV 551 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 551 (662)
.+..+...+.+.|++++|+..|+++++..+... ...|..+..+|.+.|++++|+..++++++ ..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--LD 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cC
Confidence 344444455555555555555555555433211 45677777888888888888888887776 34
Q ss_pred CC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006071 552 PN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYS 607 (662)
Q Consensus 552 p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
|+ +..++.+|...|++++|+..|+++++..+. +...+..++.++.+.|++++|.+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 234556667778888888888888877543 33455567777878887777764
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.08 E-value=3.8e-06 Score=83.67 Aligned_cols=131 Identities=12% Similarity=-0.025 Sum_probs=64.7
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 006071 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDS 474 (662)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 474 (662)
++++|...|+......+.....+..+...+.+.|++++|...|+++.+....... + ..+... +
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~ 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----A 311 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----H
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----H
Confidence 3444444444333333344556777777788888888888888777663211110 0 000000 0
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 475 MIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
... .....+..+..++.+.|++++|+..++++++..+. +...|..+..+|...|++++|+..|+++++
T Consensus 312 ~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 312 SES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 000 01233444444555555555555555555554433 444455555555555555555555555554
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=0.0001 Score=58.41 Aligned_cols=93 Identities=16% Similarity=0.053 Sum_probs=54.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHhHHHHHHH
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDP---VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD---ADAYICLIES 458 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 458 (662)
.+...+...|++++|...|+.+.+..|.++ .++..+..++...|++++|...++.+.+.... + ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 344455566666666666666666554444 45556666666666666666666666553211 2 4445555666
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 006071 459 YLRKGEPADAKTALDSMIED 478 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~ 478 (662)
+...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666543
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=1.9e-05 Score=65.87 Aligned_cols=131 Identities=17% Similarity=0.024 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-cHH
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-RD----ADAYICLIESYLRKGEPADAKTALDSMIEDG----HSP-ASS 485 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 485 (662)
++..+...+...|++++|...++...+.... ++ ..++..+...+...|++++|...+++..+.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555555555555555555554431000 01 1244555555556666666666555554321 000 022
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKG--VK---ENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
.+..+...+...|++++|...+++..+.. .. .....+..+..++...|++++|++.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33444445555566666665555554330 00 012233444555555555555555555444
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=5.9e-06 Score=64.51 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHcCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 33 AKNSEHALQFFRWVERAGL-FNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
.|++++|+..|+.+++.+. .|.+..++..+..++...|++++|...|++..+..+. +..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777776520 0345566777777777777777777777777665543 5666777777777777777777
Q ss_pred HHHHHHHHc
Q 006071 112 KIFDIMKQL 120 (662)
Q Consensus 112 ~~~~~~~~~ 120 (662)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.05 E-value=5.8e-05 Score=60.88 Aligned_cols=103 Identities=17% Similarity=0.038 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKE------NL-----DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (662)
+......+...|++++|+..|++.++..+.. +. ..|..+..++...|++++|+..+++.++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~-------- 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH-------- 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 3444455666777777777777776664431 22 2666777777777777777776665544
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASY----EKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
+|++..+..+ .....| +..+.+|...|++++|++.|++.++.
T Consensus 86 -----------------l~n~~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 86 -----------------YFNRRGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp -----------------HHHHHCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------hhhccccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2333333332 223344 56777777888888888888777654
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.04 E-value=0.00018 Score=73.30 Aligned_cols=172 Identities=8% Similarity=-0.100 Sum_probs=138.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN----------PDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
....++|+..++.+....|.+..+|+.-..++...|+ ++++++.++.+.+.+.+ +..+|..-..++.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3455688999999999999999999988888888777 89999999999987544 888999888888899
Q ss_pred C--ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-------
Q 006071 463 G--EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG-RVQTASRVMKSMVEKGVKENLDLVAKILEALLMR------- 532 (662)
Q Consensus 463 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 532 (662)
+ ++++++..++++.+.. +-+...|+.-...+...| .++++++.++++++.++. |...|+....++...
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 9 6799999999999865 346778888777888888 899999999999988777 788888777776653
Q ss_pred -------CCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHH
Q 006071 533 -------GHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIA 569 (662)
Q Consensus 533 -------g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~ 569 (662)
+.++++++.+++... ..|+ +......+...++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999988887 4454 4445666666666554
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=4.1e-05 Score=76.55 Aligned_cols=158 Identities=8% Similarity=-0.005 Sum_probs=115.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChH
Q 006071 387 IQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPA 466 (662)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (662)
...+...|++++|...|+++.+..+.+..++..+..+|...|++++|...++++.+... .+...|..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 33456789999999999999999999999999999999999999999999999998753 37889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHH--HHhcCCHHHHHHHHH-----------HHHHcCC----------CCCHHHHH
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMES--LFEDGRVQTASRVMK-----------SMVEKGV----------KENLDLVA 523 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~-----------~~~~~~~----------~~~~~~~~ 523 (662)
+|...+++..+... .+...+..+..+ +...|++++|++.++ +...... ..+...+.
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~ 170 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMK 170 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHH
Confidence 99999999987531 223344444444 788899999999988 3332211 12345566
Q ss_pred HHHHHHHhCCC--HHHHHHHHHHHH
Q 006071 524 KILEALLMRGH--VEEALGRIDLMM 546 (662)
Q Consensus 524 ~l~~~~~~~g~--~~~A~~~~~~~~ 546 (662)
.++..+...+. .+++..++.+..
T Consensus 171 ~lie~l~~~~~l~e~~v~~L~~~a~ 195 (477)
T 1wao_1 171 ELMQWYKDQKKLHRKCAYQILVQVK 195 (477)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 67777776664 344444555443
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=1.3e-05 Score=62.60 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=49.9
Q ss_pred cCChHHHHHHHHHHHHcCC--CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006071 462 KGEPADAKTALDSMIEDGH--SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539 (662)
Q Consensus 462 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (662)
.|++++|+..|++.++.+. +.+...+..+...+...|++++|+..++++++..+. +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666664321 122345555666666667777777777766666554 4556666666667777777777
Q ss_pred HHHHHHHh
Q 006071 540 GRIDLMMQ 547 (662)
Q Consensus 540 ~~~~~~~~ 547 (662)
+.+++.+.
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666665
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.00 E-value=0.0003 Score=71.67 Aligned_cols=173 Identities=7% Similarity=-0.035 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCC----------hHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGK----------LNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
....++|++.++.++..+ |.+..+|+.-..++...|+ ++++...++.+.+..++ +..+|..-...+.
T Consensus 42 ~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 345678899999998887 7888888888888877777 78888888888876655 7778888888888
Q ss_pred hcC--ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-----
Q 006071 103 KKG--IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG-RYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS----- 174 (662)
Q Consensus 103 ~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----- 174 (662)
+.| +++++++.++++.+.. +.+..+|+...-++.+.| .++++++.++++++..+ -|...|+.....+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccc
Confidence 888 6688888888888765 467778887777777777 78888888888877643 3666676665555442
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006071 175 ---------LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (662)
Q Consensus 175 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 211 (662)
+.++++.+.++.+....+. |...|+.+-..+.+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 3345555555555544322 45555555444444444
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=4.8e-05 Score=73.10 Aligned_cols=80 Identities=14% Similarity=-0.058 Sum_probs=37.9
Q ss_pred HHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcc
Q 006071 559 SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTK 638 (662)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 638 (662)
.++...|++++|+..++++++..+ .+...|..++.+|...|++++|++.++++++... .+...+..+..++...++.+
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444432 2233344455555555555555555555554432 23333444455555555554
Q ss_pred hh
Q 006071 639 QA 640 (662)
Q Consensus 639 ~a 640 (662)
++
T Consensus 359 ~a 360 (370)
T 1ihg_A 359 DK 360 (370)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.99 E-value=0.00013 Score=58.94 Aligned_cols=96 Identities=16% Similarity=0.046 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------c-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSP------A-----SSLFRSVMESLFEDGRVQTASRVMKSMVEK------ 513 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 513 (662)
.+......+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666666666666666666432110 1 227777788888888999988888888876
Q ss_pred -CCCCCHHHH----HHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 514 -GVKENLDLV----AKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 514 -~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
++. +...| .....++...|++++|+..|++.++
T Consensus 93 ~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 554 45667 7788888999999999999888876
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=2.9e-05 Score=73.86 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.+..+..++.+.|++++|+..++++++..+. +...|..+..+|...|++++|+..|+++++
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555554433 444555555555555555555555555543
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.95 E-value=0.00011 Score=61.27 Aligned_cols=95 Identities=12% Similarity=0.075 Sum_probs=59.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKK------------------GVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 443 (662)
.+......+.+.|+++.|...|...+.. .+.+..++..+..+|.+.|++++|+..++.+.+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4566677788889999999999888775 2223345555555666666666666666655554
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 444 GVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
+ +.+...|..+..+|...|++++|...|++.++
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3 22455555556666666666666666665554
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.95 E-value=6e-05 Score=72.42 Aligned_cols=121 Identities=10% Similarity=-0.019 Sum_probs=68.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHcC--------------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCC
Q 006071 23 HNLVYNVLHGAKNSEHALQFFRWVERAG--------------LFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQ 88 (662)
Q Consensus 23 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 88 (662)
+..+...+...|++++|+..|+.+++.. ..+.+..+|..+..++.+.|++++|+..+++..+..+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 3445567778889999999988887621 00334455555556666666666666666655554332
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHH
Q 006071 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMA 145 (662)
Q Consensus 89 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 145 (662)
+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...++.+++
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666666666665555542 22344444444444444444433
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.85 E-value=8.9e-05 Score=73.51 Aligned_cols=123 Identities=11% Similarity=-0.035 Sum_probs=80.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------CCCCCC----HH
Q 006071 493 SLFEDGRVQTASRVMKSMVEK-----GVK-E-NLDLVAKILEALLMRGHVEEALGRIDLMMQ------SGSVPN----FD 555 (662)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~p~----~~ 555 (662)
.+...|++++|+.++++.++. |.. | ...+++.++.+|...|++++|+.++++.++ .+..|+ ..
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455678888888888777654 221 1 234567788888888888888887777664 123333 23
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhcC-----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 556 SLLSVLSEKGKTIAAVKLLDFCLGR-----DCII--DLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
.++.+|...|++++|+.+++++++. |+.. .......+..++...|++++|...++++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667777777777777776642 2221 1344456777777888888888888887653
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.85 E-value=0.00022 Score=57.23 Aligned_cols=111 Identities=11% Similarity=-0.070 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhc----cCCHHHHHHHH
Q 006071 499 RVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLL 574 (662)
Q Consensus 499 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~ 574 (662)
++++|..+|++..+.+.. ... +...|...+.+++|++.+++..+.+.......+...|.. .+++++|..++
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 456666666666655422 222 445555555566666666666654433334445555544 56777777777
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 006071 575 DFCLGRDCIIDLASYEKVLDALLA----AGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 617 (662)
+++.+.+ ++..+..++..|.. .+++++|++++++..+.+.
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7776653 23444556777766 6777777777777766653
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.81 E-value=4.2e-05 Score=72.66 Aligned_cols=146 Identities=12% Similarity=-0.007 Sum_probs=71.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 23 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
+......+...|++++|+..|+.+++.. +.+. . +...|+..++...+. ..+|..+..+|.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-M-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-H-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-h-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3455667778999999999999988764 2222 1 112233333332221 125666777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHhcCCHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWG-FFLSLKLETAI 181 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~ 181 (662)
+.|++++|+..|+...+.. +.+...|..+..+|...|++++|+..|++.++..+ .+...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776654 34566777777777777777777777777765421 123333333333 22345566666
Q ss_pred HHHHHHHhC
Q 006071 182 RFFEDMKSR 190 (662)
Q Consensus 182 ~~~~~~~~~ 190 (662)
..|..+...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777666654
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.0012 Score=52.86 Aligned_cols=110 Identities=10% Similarity=0.007 Sum_probs=58.7
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----cCChHHHHH
Q 006071 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KGEPADAKT 470 (662)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 470 (662)
+.++|...|++..+.+.+... +...|...+.+++|.++|+...+.| ++..+..+...|.. .+++++|..
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 455566666666665533333 5555555555566666666655543 44555555555555 455556666
Q ss_pred HHHHHHHcCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 006071 471 ALDSMIEDGHSPASSLFRSVMESLFE----DGRVQTASRVMKSMVEKG 514 (662)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 514 (662)
.|++..+.| +......+...|.. .+++++|..+|++..+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 665555543 23334444444444 455555555555555543
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.73 E-value=0.00017 Score=71.57 Aligned_cols=121 Identities=10% Similarity=-0.080 Sum_probs=89.6
Q ss_pred HHHhCCCHHHHHHHHHHHHh---CCCCC---C----HHHHHHHHhccCCHHHHHHHHHHHhcC-----CCC--CChhhHH
Q 006071 528 ALLMRGHVEEALGRIDLMMQ---SGSVP---N----FDSLLSVLSEKGKTIAAVKLLDFCLGR-----DCI--IDLASYE 590 (662)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~---~~~~p---~----~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~--~~~~~~~ 590 (662)
.+...|++++|+.++++.++ .-+.| + .+.++.+|...|++++|..+++++++. ++. .....++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 46688999999999998875 22333 3 344677888999999999999988853 211 1256688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-cHhhHHHHHHHHHhcCCcchhHHHHHHhh
Q 006071 591 KVLDALLAAGKTLNAYSILFKIMEK-----G-GVT-DWKSSDKLIAGLNQEGNTKQADILSRMIR 648 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 648 (662)
.|+.+|...|++++|..++++.+.. | +.| .......|..++...|++++|+.+..+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997742 1 223 23344567777888999999987766664
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.73 E-value=0.00018 Score=55.60 Aligned_cols=80 Identities=6% Similarity=-0.062 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006071 38 HALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIM 117 (662)
Q Consensus 38 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 117 (662)
.|+..|+.+.+.. |.++..+..+..++...|++++|...|++.....+. +...|..+..++...|++++|...|+..
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677888888776 678888888888888999999999988888876543 6778888888888888888888888887
Q ss_pred HHc
Q 006071 118 KQL 120 (662)
Q Consensus 118 ~~~ 120 (662)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 763
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.65 E-value=6.2e-05 Score=60.57 Aligned_cols=87 Identities=8% Similarity=-0.025 Sum_probs=64.7
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChH----------HHHHHHHhcccCCCCCCHHHHHHHHHH
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLN----------HARCILLDMPKKGVQWDEDMFEVLIES 100 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (662)
.+.+.+++|++.|+.+.+.+ |.++.+|..+..++...++++ +|+..|++.++..+. +..+|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34567899999999999987 889999999999998887654 777777777766544 56677777777
Q ss_pred HHhcC-----------ChhHHHHHHHHHHHc
Q 006071 101 YGKKG-----------IVQESVKIFDIMKQL 120 (662)
Q Consensus 101 ~~~~g-----------~~~~A~~~~~~~~~~ 120 (662)
|...| ++++|++.|++..+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 76653 566666666666653
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00041 Score=53.55 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
.+...|+.+.+..+.++..+..+..++...|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555666666666666666666666666666666666666665543 22455566666666666666666666666553
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.56 E-value=0.00025 Score=57.09 Aligned_cols=98 Identities=9% Similarity=-0.019 Sum_probs=73.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP----------DSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
.+.+.+++|...++...+..|.++..|..+..++...+++ ++|+..|++..+.++. +...|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3556788999999999999999999999999998888765 4888888888876433 6678888888887
Q ss_pred hcC-----------ChHHHHHHHHHHHHcCCCCcHHhHHHHH
Q 006071 461 RKG-----------EPADAKTALDSMIEDGHSPASSLFRSVM 491 (662)
Q Consensus 461 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 491 (662)
..| ++++|+..|++.++. .|+...|...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 764 667777777776653 35544443333
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00013 Score=55.91 Aligned_cols=58 Identities=12% Similarity=-0.009 Sum_probs=32.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccC
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK 85 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 85 (662)
+...+...|++++|++.|+.+++.. |.++.++..+..++...|++++|...+++....
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3344555556666666666555554 445555555555555556666665555555544
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00036 Score=53.39 Aligned_cols=91 Identities=15% Similarity=0.066 Sum_probs=62.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC------HHhHHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD------ADAYIC 454 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 454 (662)
..+..+...+...|++++|...|+++.+..|.++.++..+..++...|++++|...++...+.... + ...+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 356666777778888888888888888877777888888888888888888888888887765322 2 444555
Q ss_pred HHHHHHhcCChHHHHHHH
Q 006071 455 LIESYLRKGEPADAKTAL 472 (662)
Q Consensus 455 l~~~~~~~~~~~~a~~~~ 472 (662)
+..++...|+++.|...+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 555555555555544433
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.47 E-value=0.00084 Score=48.94 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=50.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 006071 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134 (662)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 134 (662)
+...+..+...+...|++++|...+++.....+. +..++..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455666666666677777777776666654332 55666666666667777777777776666543 234555555555
Q ss_pred HHHH
Q 006071 135 LILR 138 (662)
Q Consensus 135 ~~~~ 138 (662)
++..
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.47 E-value=0.00092 Score=48.73 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=42.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
.+..+...+...|++++|...+++.....+.++.++..+..++...|++++|...++...+.. +.+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344455555566666666666666665555555566666666666666666666666555532 123444444444443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.37 E-value=0.00068 Score=50.66 Aligned_cols=66 Identities=8% Similarity=0.060 Sum_probs=46.3
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 119 (662)
|.++.++..+..++...|++++|+..|++..+..+. +...|..+..+|...|++++|...|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556677777777777777777777777777765543 556677777777777777777777777654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.27 E-value=0.0017 Score=48.49 Aligned_cols=62 Identities=6% Similarity=0.038 Sum_probs=33.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
...+..+...+...|++++|+..|+++++.++. +...|..+..+|...|++++|++.+++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334445555555555555555555555555443 33445555555555555555555555544
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.20 E-value=0.0007 Score=50.46 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=35.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENLD-LVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
...+...|++++|+..++++++..+. +.. .+..+..+|...|++++|++.+++.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33455666667777777666665444 444 566666666666677777766666665
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.15 E-value=0.012 Score=54.82 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=31.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..++..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|++.+++...
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344443333444455555555555555554 3444444455555555555555555555544
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.09 E-value=0.0095 Score=55.46 Aligned_cols=142 Identities=8% Similarity=-0.062 Sum_probs=100.9
Q ss_pred CccccHHHHHHHHH--hc---CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---C-Ch-hHH---HHHHHHHhh-C
Q 006071 378 MEASSYNPMIQHLC--HN---GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE---G-NP-DSA---FEIVKIMGR-R 443 (662)
Q Consensus 378 ~~~~~~~~l~~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~-~~-~~a---~~~~~~~~~-~ 443 (662)
.+...|...+.+.. .. ....+|..+|+++++..|.....+..+..+|... + .. ... ...++.... .
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 35567777776543 22 3457899999999999998888887766665421 1 11 111 112222111 1
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006071 444 GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (662)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (662)
..+.++.+|..+...+...|++++|...+++++..+ |+...+..+...+...|++++|.+.++++...++. ..+|.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~--~~t~~ 347 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG--ANTLY 347 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS--HHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cChHH
Confidence 235578889888888888899999999999999875 77777777788889999999999999999987654 44443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.07 E-value=0.0039 Score=60.70 Aligned_cols=94 Identities=11% Similarity=-0.034 Sum_probs=61.3
Q ss_pred hcCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHH
Q 006071 496 EDGRVQTASRVMKSMVEK-----GVK-E-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTI 568 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~ 568 (662)
..|++++|..++++.++. |.. | ...+++.++.+|...|++++|+.++++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 457899999999888764 222 1 235678888889999999999988876653
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 569 AAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
++++.+-...+.....++.++.+|...|++++|+.++++.++
T Consensus 369 ----i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 ----PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp ----HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 223233322222244455677777777777777777776553
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.98 E-value=6e-07 Score=84.41 Aligned_cols=115 Identities=8% Similarity=0.001 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHH------------HHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAFE------------IVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 479 (662)
.+..+=.++-..|....|++.-+. +-+++.++ +-...-..-...|.++++|++++.+.++
T Consensus 408 N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk----- 479 (624)
T 3lvg_A 408 NNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK----- 479 (624)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST-----
T ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHh-----
Confidence 344444556666777777665433 22333332 2334444555667778888877655432
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006071 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGR 541 (662)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 541 (662)
...|.-.+.....+|+.+-+.++++-.++.| +.+.+.+.+..|...=+++-++++
T Consensus 480 ----DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 480 ----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp ----TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred ----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 1234444556677899999999999888875 446777777777777788888775
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.95 E-value=0.0087 Score=58.36 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=53.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccC
Q 006071 493 SLFEDGRVQTASRVMKSMVEK---GVKE----NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKG 565 (662)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g 565 (662)
.+...|++++|+.++++.++. -..| ...+++.++.+|...|++++|+.++++++.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~------------------ 357 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME------------------ 357 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH------------------
Confidence 344566667777666666543 1111 133455666666666666666666554432
Q ss_pred CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
++++.+-...+.....++.++.+|...|++++|+.++++.++
T Consensus 358 -------i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 358 -------PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp -------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 112122222112244556677777777777777777777553
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.75 E-value=0.0054 Score=59.68 Aligned_cols=88 Identities=9% Similarity=-0.152 Sum_probs=64.8
Q ss_pred ccCCHHHHHHHHHHHhcC---CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CC-CcHhhHHHHH
Q 006071 563 EKGKTIAAVKLLDFCLGR---DCII----DLASYEKVLDALLAAGKTLNAYSILFKIMEK-----G-GV-TDWKSSDKLI 628 (662)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~-~~~~~~~~l~ 628 (662)
..|++++|+.+++++++. -..+ ....++.++.+|...|++++|+.++++.+.. | .. ....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346788888888777653 1122 1466788999999999999999999997742 1 12 2555788899
Q ss_pred HHHHhcCCcchhHHHHHHhhhh
Q 006071 629 AGLNQEGNTKQADILSRMIRGE 650 (662)
Q Consensus 629 ~~~~~~g~~~~a~~~~~~~~~~ 650 (662)
..|...|++++|+.+.++..++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999997666655443
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.73 E-value=0.04 Score=59.63 Aligned_cols=127 Identities=12% Similarity=0.008 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC
Q 006071 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG 463 (662)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 463 (662)
..++..+.+.|..+.|.++.+... .-.......|+++.|.++.+.+ .+...|..+...+.+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~-----------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD-----------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH-----------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCCCcc-----------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcC
Confidence 455555666677666665442211 1122334567777776664322 25667777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (662)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (662)
+++.|..+|.++.. +..+...+...|+.+...++.+.+...|. ++....+|...|++++|++++
T Consensus 696 ~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp CHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 77777777776531 22333344445555554444444433321 222333344455555555544
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.73 E-value=0.024 Score=41.15 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 500 VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 500 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.++|..++++.++.++. +......+...+.+.|++++|+..|+++++
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555555555444 444444455555555555555555555554
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.69 E-value=0.046 Score=59.14 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=25.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 495 FEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456666665553322 24555666666666666666666666554
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.098 Score=42.73 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=60.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHH
Q 006071 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKL 573 (662)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~ 573 (662)
....|+++.|.++.+.+ .+...|..+.......|+++-|...|.+.. |+..+...|.-.|+.+.-.++
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------SFDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------CHHHHHHHHHHhCCHHHHHHH
Confidence 34567777777666554 256667777777777777777776666543 345555555566666666666
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 574 LDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (662)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
.+.+...+ .++....++.-.|+.++++++|.+
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55444433 233444555566777777776644
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.56 E-value=0.013 Score=43.27 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=51.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHhcccCCCC
Q 006071 25 LVYNVLHGAKNSEHALQFFRWVERAGLFNHDRE-THLKMIEILGRVGKLNHARCILLDMPKKGVQ 88 (662)
Q Consensus 25 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 88 (662)
.....+...|++++|+..|+.+.+.. |.++. ++..+..++...|++++|...|++..+..+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34556778889999999999998876 67778 8888899999999999999999988876544
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.55 E-value=0.015 Score=46.12 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=36.9
Q ss_pred CcHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 006071 482 PASSLFRSVMESLFEDG---RVQTASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (662)
Q Consensus 482 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (662)
++..+...+..++.+++ ++++++.+++...+.+ +.-+...+..+.-++.+.|++++|+++++.+++ ..|+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ 103 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 44444445555555555 4445666666655543 211234444455556666666666666666665 4454
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.45 E-value=0.017 Score=42.01 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 154 (662)
++|..++++..+.. +.++.+...+...+.+.|++++|+..|+++.+
T Consensus 26 ~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444443332 22333333344444444444444444444433
No 223
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.21 E-value=1.6 Score=46.30 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 006071 94 FEVLIESYGKKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 94 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 119 (662)
|..+++...+.++.+.+.++|..+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56666777788888888888888764
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.3 Score=39.85 Aligned_cols=50 Identities=18% Similarity=0.120 Sum_probs=24.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcc
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMP 83 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 83 (662)
+......|+++.|.++.+.+ .+...|..+.......|+++-|.++|++..
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34444455555555554433 234455555555555555555555555443
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.20 E-value=0.019 Score=56.04 Aligned_cols=92 Identities=14% Similarity=0.078 Sum_probs=64.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc---CCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CC-HHH
Q 006071 456 IESYLRKGEPADAKTALDSMIED---GHSPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GVK-EN-LDL 521 (662)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~ 521 (662)
+..+.+.|++++|..++++.++. -+.|+ ..+++.+..+|...|++++|+.++++++.. |.. |+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455678888888888887743 12222 346777788888899999999998887653 222 22 345
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 522 VAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
++.++..|...|++++|+.++++.++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67788888888888888888876654
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.19 E-value=0.029 Score=41.92 Aligned_cols=64 Identities=14% Similarity=0.023 Sum_probs=50.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhcCCC------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 554 FDSLLSVLSEKGKTIAAVKLLDFCLGRDC------IIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 554 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
...++..+...|++..|...++.+++... ......+..++.++.+.|++++|+..+++++...+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34577788889999999999998887521 12356778899999999999999999999887643
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.19 E-value=0.047 Score=40.72 Aligned_cols=66 Identities=9% Similarity=0.139 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEKG------VKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (662)
...+...+...|+++.|...++.+++.. ..+....+..+..++.+.|++++|+.+++++.+ ..|+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3455566666677777777776666541 112455666777777777777777777777766 45553
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.18 E-value=0.029 Score=49.91 Aligned_cols=54 Identities=13% Similarity=-0.062 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCC
Q 006071 565 GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA-AGKTLNAYSILFKIMEKGGV 618 (662)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~ 618 (662)
|+.++|.+.|+++++.++..+..++..+++.|+. .|++++|.+.+++.+..+..
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 6666666666666666544334444455666655 36666666666666655443
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.15 E-value=1.7e-05 Score=74.84 Aligned_cols=263 Identities=15% Similarity=0.115 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006071 162 HTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY 241 (662)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (662)
..|..+..+....+.+.+|++-| .+. -|...|..++.+..+.|.+++-...+....+. ..+...=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 34556666666666555555433 111 14555666666666666666666666554443 22334445666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHH
Q 006071 242 VAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAA 321 (662)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 321 (662)
++.++..+..+++ -.||..-...+.+-|...|.++.|.-+|..+ .-|..|..++...|++..|
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i----------sN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS----------CCCTTTSSSSSSCSGGGSS
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC----------ccHHHHHHHHHHHHHHHHH
Confidence 6666644332222 1345444555666666666666665555432 1233334444555555544
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHH
Q 006071 322 ADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEI 401 (662)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 401 (662)
.+.-+ -..++.||..+-.+|...+++.-|.-.--.++ ....-...++..|-..|.+++-+.
T Consensus 190 VdaAr------KAns~ktWKeV~~ACvd~~EfrLAqicGLniI-------------vhadeL~elv~~YE~~G~f~ELIs 250 (624)
T 3lvg_A 190 VDGAR------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-------------VHADELEELINYYQDRGYFEELIT 250 (624)
T ss_dssp TTTTT------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-------------CCSSCCSGGGSSSSTTCCCTTSTT
T ss_pred HHHHH------hcCChhHHHHHHHHHhCchHHHHHHHhcchhc-------------ccHHHHHHHHHHHHhCCCHHHHHH
Confidence 43221 13456677777778877777766544433332 111123345556777788888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCC------CHHhHHHHHHHHHhcCChHHHH
Q 006071 402 FFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPR------DADAYICLIESYLRKGEPADAK 469 (662)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~ 469 (662)
+++............|+-|.-.|++- ++++..+.++....+ +++. ....|.-++-.|..-.+++.|.
T Consensus 251 LlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 251 MLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp THHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 88887766677888888888888775 566666666554332 3221 2345777777777777777653
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.10 E-value=0.062 Score=47.85 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc-CChHH
Q 006071 396 TGKAEIFFRQLMKKGVL--DPVAFNNLIRGHSKE-----GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK-GEPAD 467 (662)
Q Consensus 396 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 467 (662)
...|...++++++..+. +...|..+...|... |+.++|.+.|++..+.+..-+..++..+...++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45677888888888765 667899999999884 89999999999988865333477788888888874 88999
Q ss_pred HHHHHHHHHHcCCC--CcHHh
Q 006071 468 AKTALDSMIEDGHS--PASSL 486 (662)
Q Consensus 468 a~~~~~~~~~~~~~--~~~~~ 486 (662)
+...+++.+..+.. |+...
T Consensus 259 a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHcCCCCCCCChhH
Confidence 99999998876544 44433
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.01 E-value=0.15 Score=39.88 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHhhCCCCCCHH-hHHHHHH------HHHhcCChHHHHHHHHHHHH
Q 006071 411 VLDPVAFNNLIRGHSKEGNP------DSAFEIVKIMGRRGVPRDAD-AYICLIE------SYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 477 (662)
+.|+.+|-..+....+.|++ ++.+++|++.... ++|+.. .|...+. .+...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45666777777766666777 6667777766653 444421 1111111 11233677777777777765
Q ss_pred cCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 478 DGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE 517 (662)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 517 (662)
.+-+- ...|.....--.+.|+...|.+++...+..++.|
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 42221 4445444444566777777777777777776664
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.98 E-value=2.1 Score=45.49 Aligned_cols=257 Identities=11% Similarity=0.023 Sum_probs=132.8
Q ss_pred HHHcCCcHHHHHHHHHHHHHhhhhccCCC-CCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCC--------CCHHH
Q 006071 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQS-TLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV--------LDPVA 416 (662)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~ 416 (662)
+....|+.++++.++...+. .. ...+....-..+.-+....|..+++..++........ +....
T Consensus 383 GlIh~g~~~~gl~~L~~yL~-------~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLP-------GSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTST-------TSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhcc-------ccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHH
Confidence 45667888888777766531 10 1111122223333445566666677777777665432 11112
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHHh--HH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHH
Q 006071 417 FNNLIRGHSKEGN-PDSAFEIVKIMGRRGVPRDADA--YI--CLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491 (662)
Q Consensus 417 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 491 (662)
-.++.-++...|. -+++.+.+..+.... +... .. .+...+.-.|+.+....++..+.+.. .-+..-...+.
T Consensus 456 gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalg 531 (963)
T 4ady_A 456 GASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVG 531 (963)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHH
Confidence 2233333333332 245566666655432 2211 22 23334556677777778888776532 11222222333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH-H--HHHHHhccCC
Q 006071 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLV--AKILEALLMRGHVEEALGRIDLMMQSGSVPNFD-S--LLSVLSEKGK 566 (662)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~--~~~~~~~~g~ 566 (662)
-++...|+.+.+..+.+.+... ..|....- ..+.-+|+..|+.....+++..+.+.. ..+.. . +.-++...|+
T Consensus 532 LGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSS
T ss_pred HHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCC
Confidence 3455778888888888887653 22222221 234556778889777777888887532 11111 1 2223334566
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 006071 567 TIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKT-LNAYSILFKIMEKG 616 (662)
Q Consensus 567 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 616 (662)
.+.+.++++...+. ..+....-..++-++...|.. .+|++.+.++....
T Consensus 610 ~e~v~rlv~~L~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~ 659 (963)
T 4ady_A 610 YTTVPRIVQLLSKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDP 659 (963)
T ss_dssp CSSHHHHTTTGGGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCC
Confidence 66677777644432 222222222334444445544 68899999987544
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.97 E-value=0.066 Score=41.82 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=52.8
Q ss_pred CCCHHhHHHHHHHHHhcCCh------HHHHHHHHhcccCCCCCCH-HHHHHHHH------HHHhcCChhHHHHHHHHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKL------NHARCILLDMPKKGVQWDE-DMFEVLIE------SYGKKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 119 (662)
|.++.+|-..+..+-+.|+. ++.+++|++.... ++|+. ..|...+. .+...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55666777666666666766 6666666665543 22221 11111111 11222556666666666654
Q ss_pred cCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 006071 120 LGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIE 158 (662)
Q Consensus 120 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 158 (662)
.+-. =...|......-.++|+...|.+++...+..+..
T Consensus 89 ~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3211 1444555555555566666666666665555443
No 234
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.89 E-value=0.04 Score=43.78 Aligned_cols=83 Identities=16% Similarity=0.086 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcC---ChHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG---KLNHARCILLDMPKKG-VQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
...+.+.|....+.+ +++..+...+.-++.+.+ ++++++.+|+.+.+.+ +..+...+..+..+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 445556666665555 466777777777777766 5557777777766654 1113455556666667777777777
Q ss_pred HHHHHHHHc
Q 006071 112 KIFDIMKQL 120 (662)
Q Consensus 112 ~~~~~~~~~ 120 (662)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777663
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.46 E-value=0.61 Score=35.61 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 006071 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG 444 (662)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 444 (662)
...++.....|..+.-.+++..+....++++...-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3334444444555555555554444334455555555555555555555555555554444
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.31 E-value=0.12 Score=39.46 Aligned_cols=66 Identities=17% Similarity=0.091 Sum_probs=29.7
Q ss_pred CcHHhHHHHHHHHHhcCCHHH---HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 482 PASSLFRSVMESLFEDGRVQT---ASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
++..+-..+..++.++..... ++.+++.+.+.+ +.-.......+.-++.+.|++++|+++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333333344444444444333 455555444432 111223333344555555555555555555554
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.22 E-value=0.2 Score=40.19 Aligned_cols=130 Identities=10% Similarity=0.089 Sum_probs=71.8
Q ss_pred CCCCcH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 006071 479 GHSPAS--SLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKEN-------LDLVAKILEALLMRGHVEEALGRIDLMMQS 548 (662)
Q Consensus 479 ~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 548 (662)
|+.|.. .++..-+..+...|.++.|+-+.+.+... +..|+ ..++..++.++...|++..|...|++.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444443 34445566778889999998888876654 22222 124456788888999999999988887641
Q ss_pred -CCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 549 -GSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 549 -~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
..-|...+......-...... ... ...+...-+.++.+|.+.|++++|+.+++.++.+.-
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~-------s~~--~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R 153 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQ-------SQC--LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR 153 (167)
T ss_dssp HHCC---------------------------C--CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC
T ss_pred HHHHhcCCCccccccccCCCcc-------ccc--ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc
Confidence 111111100000000000000 000 112234445699999999999999999998776644
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.67 E-value=5.6 Score=38.76 Aligned_cols=194 Identities=15% Similarity=0.123 Sum_probs=114.6
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH----Hh
Q 006071 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH----SK 426 (662)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 426 (662)
|+++.|++.+..+.+... ..............++..|...++++...+.+..+.+...........+++.+ ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r---~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTR---QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHS---SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh---hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 567777776655544321 23333344556777888899999999988888777665533344444444433 22
Q ss_pred cCChhHH--HHHHHHHhh--CC-CCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCc---HHhHHHHHHH
Q 006071 427 EGNPDSA--FEIVKIMGR--RG-VPR---DADAYICLIESYLRKGEPADAKTALDSMIED--GHSPA---SSLFRSVMES 493 (662)
Q Consensus 427 ~~~~~~a--~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~ 493 (662)
....+.. ..+.+.... .| +-. .......|...+...|++.+|..++..+... +.... ...+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3333321 122211111 01 111 1233456788888899999999999888632 22111 2345555677
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 494 LFEDGRVQTASRVMKSMVEK----GVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
|...+++..|..++.++... ...|+ ...+...+..+...+++.+|-..|.++..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88889999999888887532 22222 23345666677778888888887776654
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.39 E-value=0.49 Score=49.15 Aligned_cols=48 Identities=17% Similarity=-0.055 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcC
Q 006071 586 LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEG 635 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 635 (662)
..-|..+|....|.+.++||++.|+..+... -+..++..|+..|...+
T Consensus 613 ~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R--Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 613 GLEWELLGLIMLRTWHWEDAVACLRTSIVAR--FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHhcC
Confidence 4557778888888888888888888888654 37777778888887766
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.32 E-value=1.3 Score=33.80 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHhhCCCC-CCHHhHHHHHHHHHhcCChHHHHHH
Q 006071 396 TGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDS---AFEIVKIMGRRGVP-RDADAYICLIESYLRKGEPADAKTA 471 (662)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 471 (662)
...+...|......+.++..+-..+..++.++.+... ++.+++.+.+.+.+ -.....-.+.-++.+.|++++|...
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344444555444455666666666666666655544 56666665554211 1223334445556666666666666
Q ss_pred HHHHHH
Q 006071 472 LDSMIE 477 (662)
Q Consensus 472 ~~~~~~ 477 (662)
++.+++
T Consensus 97 ~~~lL~ 102 (126)
T 1nzn_A 97 VRGLLQ 102 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666664
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.28 E-value=2.1 Score=32.75 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=66.8
Q ss_pred cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHH
Q 006071 139 RGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKL 218 (662)
Q Consensus 139 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 218 (662)
.|..++..++..+.... .+..-||-+|--....-+-+...++++.+-+. + |. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHHHHH
Confidence 45556666666655543 23444455554444444555555555444332 1 11 223344333333
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 006071 219 FAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (662)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 297 (662)
+-.+-. +....+..+......|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333211 3333444455555556666555555554322 255555566666666666666666666666655543
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.15 E-value=1.5 Score=33.60 Aligned_cols=71 Identities=7% Similarity=0.022 Sum_probs=41.9
Q ss_pred CcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 006071 482 PASSLFRSVMESLFEDGR---VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (662)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (662)
|+..+--.+..++.++.+ ..+++.+++.+.+.++.-....+-.+.-++.+.|++++|.++.+.+++ ..|++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 444444444555555543 345666666666655433445555566667777777777777777766 56653
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.00 E-value=0.58 Score=37.50 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (662)
.-..+..||...|++++|+.+++.+....-.|..+
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvn 158 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKIN 158 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHH
Confidence 33446667777777777777666554333344433
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.82 E-value=1.1 Score=50.20 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENL----DLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
|..++..+.+.|.++.+.++-+.+++.....+. ..|..++.++...|++++|...+-.+..
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 445555566666666666666665554221111 2456666666667777776666655544
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.58 E-value=1.4 Score=45.79 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=45.7
Q ss_pred HhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 561 LSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIM 613 (662)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 613 (662)
|...|+++-|+.+.++++... +.+...|..|+.+|...|+++.|+=.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446799999999999999875 4568999999999999999999999998875
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.56 E-value=2.9 Score=32.46 Aligned_cols=72 Identities=7% Similarity=0.028 Sum_probs=44.5
Q ss_pred CCcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 006071 481 SPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (662)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (662)
.|+..+-..+..++.++.. ..+++.+++.+...++.-.......+.-++.+.|++++|.++.+.+++ ..|++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 3455554455555555543 345666777766655443455555567777777777777777777776 66664
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.83 E-value=3.2 Score=46.35 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006071 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPT----RHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMI 203 (662)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 203 (662)
-|..++..+.+.+.++.+.++-...++...+.+ ...|..+.+.+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 356666667777777777766655544321111 12456666777777777777777766665422 344445555
Q ss_pred HHHhhc------------CChHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHH-HHHHHh
Q 006071 204 NGYNRF------------KKMDEAEKLFAEMKEKN--IEPTVISYTTMIKGYVAVERADDALR-IFDEMK 258 (662)
Q Consensus 204 ~~~~~~------------g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~ 258 (662)
..++.. |..++..+++..-.+.. +...+.-|..|=.-+...|++.+|-. +|+.+.
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 444443 44556666665433211 11112234555555667777766554 444443
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.62 E-value=3.3 Score=31.72 Aligned_cols=62 Identities=11% Similarity=-0.081 Sum_probs=45.9
Q ss_pred HHHHHHhccC---CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 556 SLLSVLSEKG---KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 556 ~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
.+++++.+.. +..+++.+++..+..++......+..++-++++.|++++|.++++.+++..+
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3666776654 5567888888888766433445555688999999999999999999887643
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.51 E-value=1.7 Score=41.53 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCcCHHHHH
Q 006071 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLS-----EGIEPTRHTYN 165 (662)
Q Consensus 93 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 165 (662)
+...++..+...|++.++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34455666777788888877777776643 45677777888888888888888877776643 37777766543
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.49 E-value=16 Score=35.49 Aligned_cols=184 Identities=11% Similarity=0.141 Sum_probs=92.4
Q ss_pred CChhHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHhHHHHHHHH----Hhc
Q 006071 394 GQTGKAEIFFRQLMKKG------VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYICLIESY----LRK 462 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~----~~~ 462 (662)
++++.|.+.+..+.+.. .........++..|...++++...+.+..+... |.. ......++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 66777877766555421 455677788888888888888887777766553 322 22222333222 222
Q ss_pred CChHHH--HHHHHHHHH--cC-CCC---cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 006071 463 GEPADA--KTALDSMIE--DG-HSP---ASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GVKEN---LDLVAKILEAL 529 (662)
Q Consensus 463 ~~~~~a--~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 529 (662)
...+.. ..+.+.... .| +-. .......|...+...|++.+|..++..+... +.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 222211 111111100 01 000 1112234555666677777777777776543 22211 23444556666
Q ss_pred HhCCCHHHHHHHHHHHHh----CCCCCCH-----HHHHHHHhccCCHHHHHHHHHHHhc
Q 006071 530 LMRGHVEEALGRIDLMMQ----SGSVPNF-----DSLLSVLSEKGKTIAAVKLLDFCLG 579 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~----~~~~p~~-----~~~~~~~~~~g~~~~A~~~~~~~~~ 579 (662)
...+++..|..+++++.. ....|+. ...+..+...+++.+|.+.|..+.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 677777777766666542 1122221 1122333345666666666554444
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.37 E-value=1.7 Score=41.61 Aligned_cols=55 Identities=9% Similarity=0.015 Sum_probs=31.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006071 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIM 440 (662)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 440 (662)
++..+...|++.++...+..+....|.+...+..++.++...|+..+|++.|+.+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455566666665555555555555556666666666666666666555554
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.65 E-value=14 Score=32.48 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=62.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHH
Q 006071 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVK 572 (662)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~ 572 (662)
.+.+.|+++++++....-++..+. |...-..++..||-.|++++|.+-++...+ ..|+.......|.. .=.|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~---lI~aE~ 79 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRH---LVKAAQ 79 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHH---HHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHH---HHHHHH
Confidence 345667777777777776666555 666666677777777777777776666665 55554433333321 111222
Q ss_pred HHHHHhcCCCCC-----ChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 006071 573 LLDFCLGRDCII-----DLASYEKVLDALL--AAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 573 ~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 615 (662)
.-+....-.-.| .+.....++.++. ..|+.++|.+.-.++.+.
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222211111 1222234444443 357777777776666554
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.60 E-value=8.5 Score=29.93 Aligned_cols=62 Identities=11% Similarity=-0.081 Sum_probs=47.6
Q ss_pred HHHHHHhccC---CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 556 SLLSVLSEKG---KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 556 ~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
.+++++.+.. +..+++.+++..+..++.......+.++-++++.|++++|.++++.+++..+
T Consensus 44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 44 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 4677777654 5567899999888865544444455699999999999999999999998754
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.19 E-value=21 Score=33.90 Aligned_cols=164 Identities=6% Similarity=-0.043 Sum_probs=88.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcC--C---CCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHhH---
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKG--V---LDPVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAY--- 452 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~--- 452 (662)
....+...|.+.|+.++..+++......- . ........++..+.... ..+.-.++.....+..- .+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44566677778888888777777654432 1 12334566777776643 33333344333332100 011122
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHH
Q 006071 453 ---ICLIESYLRKGEPADAKTALDSMIEDGHSPAS-----SLFRSVMESLFEDGRVQTASRVMKSMVEK--GVKENLDLV 522 (662)
Q Consensus 453 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~ 522 (662)
.-++..|...|++.+|.+++.++.+.--+.|. ..+..-+..|...|++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 25677777888888887777777753212221 12333344566777888887777776544 222333322
Q ss_pred H----HHHHHHH-hCCCHHHHHHHHHHHH
Q 006071 523 A----KILEALL-MRGHVEEALGRIDLMM 546 (662)
Q Consensus 523 ~----~l~~~~~-~~g~~~~A~~~~~~~~ 546 (662)
. .-+..+. ..++|..|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2 2223345 6777777776655543
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.63 E-value=30 Score=35.24 Aligned_cols=124 Identities=8% Similarity=0.062 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006071 163 TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV 242 (662)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (662)
.|.....++ +.|++..+..+...+....+. ....|..+.... ......+....+.+-.. .+.....-...+..+.
T Consensus 9 ~~~~a~~a~-~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 9 RYAQIKQAW-DNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHH
Confidence 344444433 567777777766555433121 112333222211 22244544444444321 1111222344455666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 006071 243 AVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERY 296 (662)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 296 (662)
+.+++...+.++.. .+.+...-.....+....|+..+|......+-..+
T Consensus 84 ~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred hCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 67777766554432 13344444455666677787776766666655544
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.45 E-value=7.2 Score=28.05 Aligned_cols=47 Identities=9% Similarity=0.279 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
+..+-++.+....+.|++....+.+.+|.+.+++..|+++++.+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555555555566677777777777777777777777777766655
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.30 E-value=8.3 Score=27.52 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=31.2
Q ss_pred HhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006071 561 LSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
+...|+|++|..+.+ ..+.|+.+.| ++-+-.+.|-.+++...+.++-.++
T Consensus 49 LmNrG~Yq~Al~l~~----~~c~pdlepw--~ALce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAH----GNPWPALEPW--FALCEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGT----TCCCGGGHHH--HHHHHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcC----CCCCchHHHH--HHHHHHhcccHHHHHHHHHHHHhCC
Confidence 456677777776655 2334555555 3445567777777777776666554
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.08 E-value=11 Score=27.16 Aligned_cols=47 Identities=6% Similarity=0.101 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006071 177 LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
.-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33445555555555555666666666666666666666666665555
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.03 E-value=22 Score=31.29 Aligned_cols=57 Identities=23% Similarity=0.203 Sum_probs=36.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 458 SYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV 515 (662)
Q Consensus 458 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 515 (662)
...+.|++++++..+..-++.. +-|...-..++..++-.|+|++|..-++...+..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3456677777777777666543 33455555666677777777777777777766644
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.18 E-value=35 Score=32.35 Aligned_cols=221 Identities=8% Similarity=-0.048 Sum_probs=116.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC-C-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHhHH---
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKG-V-L----DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDADAYI--- 453 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~--- 453 (662)
.++..|...|++.+|..++..+.+.- . . -..++..-++.|...+++.++...+...... .+.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 56788899999999999998887753 1 1 1235666778889999999999999877642 2323443322
Q ss_pred -HHHHHHH-hcCChHHHHHHHHHHHHcCCC---Cc---HHhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHH
Q 006071 454 -CLIESYL-RKGEPADAKTALDSMIEDGHS---PA---SSLFRSVMESLFEDGRVQTASRVMK-SMVEKGVKENLDLVAK 524 (662)
Q Consensus 454 -~l~~~~~-~~~~~~~a~~~~~~~~~~~~~---~~---~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~ 524 (662)
.-...+. ..+++..|...|-+..+.--. |. ...| .++.+.. .++..+...++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkY-lvL~aLl-~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKY-MLLCKIM-LGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-HHHHHHH-TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHH-HHHHHHH-cCCHHHHHHHhccccccccCCccHHHHHH
Confidence 2233455 789999998887776532101 11 1122 2222222 233222222222 2111113344555566
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCH
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQSGSVPNF--DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKT 602 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 602 (662)
++.++ ..+++.+..++++.... .+..|. ...+..+.+ .-.+.++ .+.+. +-+......++..+.- ..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~-~Ir~~~L---~~i~~---pYsrIsl~~iA~~l~l--s~ 330 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYD-TMLEQNL---CRIIE---PYSRVQVAHVAESIQL--PM 330 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHH-HHHHHHH---HHHHT---TCSEEEHHHHHHHHTC--CH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHH-HHHHHHH---HHHhH---hhceeeHHHHHHHHCc--CH
Confidence 66654 55677666665554322 122231 111111111 0011111 11221 1234455556655533 67
Q ss_pred HHHHHHHHHHHHcCCC
Q 006071 603 LNAYSILFKIMEKGGV 618 (662)
Q Consensus 603 ~~A~~~~~~~~~~~~~ 618 (662)
+++...+-+++..|..
T Consensus 331 ~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 331 PQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCe
Confidence 8899999998877553
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.54 E-value=10 Score=36.81 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHH--
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEK---GVKENLDLV-- 522 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~-- 522 (662)
.++..+...|.+.|+++.|.+.+.++...-..+ -...+...+..+...+++..+...+.++... +..|+....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 466778888888899998988888887542222 2345666777788888888888888887654 222222211
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 523 AKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..-+..+...+++.+|-..|-.+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122223456778777777666554
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.43 E-value=50 Score=33.65 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=30.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcC
Q 006071 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG 140 (662)
Q Consensus 61 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 140 (662)
..+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..| ...+.....++..+.+.|
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 334444445555544443322 11234444444444445555544444444443333 122333344444444333
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.35 E-value=5.8 Score=33.05 Aligned_cols=53 Identities=15% Similarity=0.014 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 567 TIAAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (662)
Q Consensus 567 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 619 (662)
..++..+|..+...+.... ...|...+..|...|++.+|.++++..+.....|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666666666555544 4445555566666666666666666666655443
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.56 E-value=16 Score=27.89 Aligned_cols=60 Identities=7% Similarity=0.262 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (662)
+..+-++.+....+.|++......+.+|.+.+|+..|+++|+.+..+ ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44555555555567788888888888888888888888888877665 2222444554543
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.83 E-value=15 Score=26.20 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006071 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (662)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 112 (662)
....++|..+-+|+...+ . ...+-..-+..+...|+|++|..+.+... .||...|..+.. .+.|.-+.+..
T Consensus 19 ~H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 447899999999998765 2 22223333455678999999998877665 478888877654 47888888888
Q ss_pred HHHHHHHcCCCcCHHhHH
Q 006071 113 IFDIMKQLGVERSVKSYD 130 (662)
Q Consensus 113 ~~~~~~~~g~~~~~~~~~ 130 (662)
.+..+...| .|....|.
T Consensus 90 rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 888887766 34444443
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.68 E-value=16 Score=26.23 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=22.9
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 135 LILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 135 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
.+...|++++|..+.+.+ ..||...|..+.. .+.|-.+++...+..+...
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 344555555555544443 2445444443322 2445555554444444443
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.45 E-value=20 Score=27.40 Aligned_cols=46 Identities=7% Similarity=0.162 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 006071 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (662)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 224 (662)
+..+-++.+....+.|+.....+.+.+|.+.+|+..|.++|+-++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555666666666666666666666666666666653
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.21 E-value=16 Score=26.13 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006071 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (662)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 112 (662)
....++|..+-+|+...+ . ...+-..-+..+...|+|++|..+.+... .||...|..+.. .+.|.-+.+..
T Consensus 20 ~H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 347899999999998765 2 22223333455678999999999988776 478888877654 47788888888
Q ss_pred HHHHHHHcCCCcCHHhHH
Q 006071 113 IFDIMKQLGVERSVKSYD 130 (662)
Q Consensus 113 ~~~~~~~~g~~~~~~~~~ 130 (662)
.+..+...| .|....|.
T Consensus 91 rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 887887766 34444443
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.75 E-value=32 Score=33.23 Aligned_cols=98 Identities=11% Similarity=0.020 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCcHHhH--H
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDADAYICLIESYLRKGEPADAKTALDSMIED---GHSPASSLF--R 488 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~ 488 (662)
+...+...|.+.|+++.|.+.+.++... +..--...+..+++.+...+++..+...+.++... +-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3445555555666666666666555542 22223345555666666666666666666655422 212221110 0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 489 SVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
.-...+...+++..|...|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111234456677766666665443
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.62 E-value=15 Score=29.09 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 568 IAAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 619 (662)
+++..+|+.+...+.... ...|...+..+...|++.+|.++++..+.....|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 447888888888876666 5666777888888999999999999888876554
No 271
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.53 E-value=51 Score=29.98 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHH
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVL 325 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~ 325 (662)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5666677777777777777766554
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.41 E-value=39 Score=28.17 Aligned_cols=57 Identities=11% Similarity=0.065 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 006071 279 AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPT 335 (662)
Q Consensus 279 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (662)
.++......+|..|...++-..-...|...+..+...|++.+|..+|..-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344566777777777766655556667777777777777777777777776665555
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=72.88 E-value=58 Score=29.89 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHH
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVL 325 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~ 325 (662)
++.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6666777777777777777776655
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.34 E-value=10 Score=30.45 Aligned_cols=52 Identities=8% Similarity=0.029 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 568 IAAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 619 (662)
+++..+|+.+...+.... ...|...+..|-..|++.+|.++++..+.....|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 346667777777766655 5556677777778888888888888888776544
No 275
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=69.58 E-value=13 Score=31.54 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 568 IAAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 619 (662)
+++..+|..+...+.... ...|...+..|...|++.+|.++|+..+.....|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 577788888888877766 5666778888888999999999999988876554
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=60.45 E-value=25 Score=24.32 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=9.0
Q ss_pred hcCCHHHHHHHHHHHH
Q 006071 598 AAGKTLNAYSILFKIM 613 (662)
Q Consensus 598 ~~g~~~~A~~~~~~~~ 613 (662)
+.|++++|+..+.+.+
T Consensus 31 ~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAI 46 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4566666666555543
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.11 E-value=78 Score=26.43 Aligned_cols=142 Identities=9% Similarity=-0.027 Sum_probs=66.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHH
Q 006071 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (662)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 133 (662)
+++..-...+..+...|.......+.+.+ .. ++..+-...+.++...|+.+.. ..+..+.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l-~~---~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKAL-KD---EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHT-TC---SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHH-cC---CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 45555555556666666533333333333 21 3555666666666666654333 33333332 35555555566
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006071 134 KLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (662)
Q Consensus 134 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 211 (662)
.++.+.++.+ +...+..+.. .++..+-...+.++...+..+ +...+..+.+ .++..+-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 6666666533 3333333332 244444444555555555433 2333333332 2344444444555555444
No 278
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=58.12 E-value=1.1e+02 Score=27.98 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHH
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 490 (662)
..++.....+...|.+.+++.+|...|- . |-.+++..+..++.-+...+...++ +......+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHH
Confidence 4577777888888888888888887762 2 2233445664444444443332222 22222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006071 491 MESLFEDGRVQTASRVMKSMVE 512 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~ 512 (662)
+ -|.-.++...|..+++...+
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHHH
Confidence 2 24446778888777666554
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.69 E-value=74 Score=25.11 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 006071 285 VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPT 335 (662)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (662)
...+|..|...++-..-...|...+..+-..|++.+|..+|..-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 556666666665555455566666666666667777776666666655444
No 280
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=55.38 E-value=86 Score=28.45 Aligned_cols=29 Identities=7% Similarity=-0.038 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006071 590 EKVLDALLAAGKTLNAYSILFKIMEKGGV 618 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 618 (662)
...+...++.+++..|..+-+++++.+..
T Consensus 211 r~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 211 QVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 34455667888888888888888887653
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=54.80 E-value=1.3e+02 Score=27.95 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCC
Q 006071 234 YTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK--MVEVQKVLREMVERYIPP 299 (662)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~ 299 (662)
...++.-|...++.++|.+.++++...... ...+...+..++-+.++ .+...+++..+...++.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 355677788888888888888888532111 12333344444444332 345677777777766554
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.77 E-value=1.2e+02 Score=27.42 Aligned_cols=26 Identities=15% Similarity=-0.073 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHH
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAFEIV 437 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 437 (662)
.++.....+...|.+.+++.+|...|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 47777788888888888888877765
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.80 E-value=1.4e+02 Score=32.60 Aligned_cols=131 Identities=14% Similarity=0.017 Sum_probs=66.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 105 (662)
+...+...+.++.|.++..|+ +.++..-..++++|...|++++|.++|++.-. |+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~--------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV--------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG---------
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc---------
Confidence 444555556666555555444 33444444556666666666666666665532 22111000000
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHhcC
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTR----HTYNVMLWGFFLSL 175 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~ 175 (662)
......++.... . ......-|..++..+-+.+-++.+.++-+..++.-...|. ..|+.+.++.+..|
T Consensus 880 -~~~~~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 -LREFQEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -GHHHHHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -hhhhhhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 000011111100 0 0112235788889999999999999888888765222232 35666666665443
No 284
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=52.73 E-value=37 Score=23.48 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=6.8
Q ss_pred hcCCHHHHHHHHHH
Q 006071 598 AAGKTLNAYSILFK 611 (662)
Q Consensus 598 ~~g~~~~A~~~~~~ 611 (662)
+.|++++|+.++.+
T Consensus 23 ~~g~y~eAl~lY~~ 36 (83)
T 2v6y_A 23 KEGKVEDAITYYKK 36 (83)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 34555555544444
No 285
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=50.42 E-value=1.1e+02 Score=25.32 Aligned_cols=142 Identities=9% Similarity=-0.029 Sum_probs=61.7
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHH
Q 006071 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (662)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 133 (662)
+++..-...+..+...|.......+.+.+ . .++..+....+.++...|+.+....+ ..+.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPL-IKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHH-HHHHc---CCCHHHHHHHH
Confidence 44445555555555555433333333333 2 13555555555555555554333222 22322 24555555555
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006071 134 KLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (662)
Q Consensus 134 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 211 (662)
.++.+.++.+ +...+..+.. .++..+-...+.++.+.++.+ +...+..+... ++..+-...+.++...|+
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc
Confidence 5555555533 2233333332 234444444445555444432 22223333321 244444444444444444
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.91 E-value=1e+02 Score=24.71 Aligned_cols=51 Identities=6% Similarity=-0.001 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 006071 285 VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPT 335 (662)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (662)
...+|..|...++-..-...|...+..+-..|++..|..+|..-++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 455666666666655556666667777777777777777777776665555
No 287
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=47.97 E-value=41 Score=23.87 Aligned_cols=12 Identities=8% Similarity=0.063 Sum_probs=5.1
Q ss_pred cCCHHHHHHHHH
Q 006071 564 KGKTIAAVKLLD 575 (662)
Q Consensus 564 ~g~~~~A~~~~~ 575 (662)
.|++++|+.++.
T Consensus 28 ~g~y~eAl~~Y~ 39 (93)
T 1wfd_A 28 ESRYQQALVCYQ 39 (93)
T ss_dssp TTCHHHHHHHHH
T ss_pred hCCHHHHHHHHH
Confidence 344444444443
No 288
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=47.23 E-value=1.2e+02 Score=25.16 Aligned_cols=142 Identities=8% Similarity=-0.113 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006071 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML 168 (662)
Q Consensus 89 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 168 (662)
++...-...+..+.+.|..+. ...+..+.. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 456666666666666665333 333333333 245555555666666666533 3333333332 24444445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006071 169 WGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER 246 (662)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 246 (662)
.++.+.++.+.. ..+..+.. .++..+-...+.++...|+.+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 555555554322 22323332 235455455555555555432 2333333332 2344444444444444443
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.20 E-value=1.9e+02 Score=26.93 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=13.2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHH
Q 006071 200 NTMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 200 ~~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
..++.-|...++.++|...++++.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 344555555566666666555543
No 290
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=45.95 E-value=1.1e+02 Score=29.55 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (662)
.+.+-|.++..+. |++--...|..-...+...|++++|.++--.
T Consensus 343 ~n~~lA~~lA~R~---~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~ 386 (494)
T 1bpo_A 343 QNPDLALRMAVRN---NLAGAEELFARKFNALFAQGNYSEAAKVAAN 386 (494)
T ss_dssp CCHHHHHHHHHHT---TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhc---CCccHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4455444443332 4444444555555566666666666655444
No 291
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=41.07 E-value=51 Score=20.95 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=21.0
Q ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCCCH
Q 006071 23 HNLVYNVLHGAK-NSEHALQFFRWVERAGLFNHDR 56 (662)
Q Consensus 23 ~~~l~~~l~~~~-~~~~A~~~~~~~~~~~~~~~~~ 56 (662)
...-...|...+ |++.|+..|..+...+.+|++.
T Consensus 22 ~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 22 LEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 334444555544 7888888887776666555543
No 292
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=40.63 E-value=68 Score=22.18 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=5.7
Q ss_pred cCCHHHHHHHHHH
Q 006071 599 AGKTLNAYSILFK 611 (662)
Q Consensus 599 ~g~~~~A~~~~~~ 611 (662)
.|++++|+..+..
T Consensus 26 ~g~y~eAl~~Y~~ 38 (85)
T 2v6x_A 26 ATQYEEAYTAYYN 38 (85)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 3444444444443
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.25 E-value=1.8e+02 Score=24.74 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006071 431 DSAFEIVKIMGRRGVPR-DADAYICLIESYLRKGEPADAKTALDSMIEDGHSP 482 (662)
Q Consensus 431 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 482 (662)
+....+|..|...|+.- -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34555666666554432 23455666666666666666666666666655555
No 294
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=38.59 E-value=3.4e+02 Score=27.82 Aligned_cols=17 Identities=6% Similarity=-0.171 Sum_probs=12.9
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006071 597 LAAGKTLNAYSILFKIM 613 (662)
Q Consensus 597 ~~~g~~~~A~~~~~~~~ 613 (662)
+..|++++|++.++++.
T Consensus 549 ~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHTTCHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHhCC
Confidence 67888888888877754
No 295
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=38.40 E-value=2.8e+02 Score=26.78 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=66.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
+.....+++-|+++..+ .+ +|.-...|..-.+.+...|++.+|.++.-..++ |+-.++.+.+.+-..=...|+..
T Consensus 338 i~~~l~n~~lA~~lA~R---~~-LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~s 412 (494)
T 1bpo_A 338 ITNVLQNPDLALRMAVR---NN-LAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTS 412 (494)
T ss_dssp HHHTTCCHHHHHHHHHH---TT-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCC
T ss_pred hhhccCCHHHHHHHHHh---cC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCC
Confidence 44455777777666543 33 666677777778888888999999888877765 44446666655444333445666
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChh
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM 143 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 143 (662)
-....|..+.+.| ..+..--..+++.-...|+.+
T Consensus 413 plL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~ 446 (494)
T 1bpo_A 413 PLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQ 446 (494)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHH
Confidence 6666666666655 234333333444444444443
No 296
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=38.39 E-value=70 Score=22.25 Aligned_cols=14 Identities=7% Similarity=-0.102 Sum_probs=6.5
Q ss_pred cCCHHHHHHHHHHH
Q 006071 564 KGKTIAAVKLLDFC 577 (662)
Q Consensus 564 ~g~~~~A~~~~~~~ 577 (662)
.|++++|+.++..+
T Consensus 29 ~g~y~eAl~lY~~A 42 (86)
T 4a5x_A 29 ESRYPQALVCYQEG 42 (86)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 44444444444433
No 297
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=37.37 E-value=1.7e+02 Score=23.97 Aligned_cols=111 Identities=8% Similarity=-0.097 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006071 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML 168 (662)
Q Consensus 89 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 168 (662)
++.......+..+...|..+....+.+.+ . .++...-...+.++...+..+ +...+..+.. .++..+-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 35555555555555555533333333333 2 245555555555565555543 3333333332 24444445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006071 169 WGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (662)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 211 (662)
.++.+.++.+.... +..+.. .++..+-...+.++...++
T Consensus 98 ~aL~~~~~~~~~~~-L~~~l~---d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 98 VALGQIGDERAVEP-LIKALK---DEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHCCGGGHHH-HHHHTT---CSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCcHHHHHH-HHHHHc---CCCHHHHHHHHHHHHHhCC
Confidence 55555555432222 222222 2344444444555555444
No 298
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.05 E-value=98 Score=24.15 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=33.0
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 006071 475 MIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (662)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (662)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.++..+..+....+..+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4445655554332 3344444455555667777777666666566665556666666553
No 299
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.97 E-value=1.7e+02 Score=23.24 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 430 PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509 (662)
Q Consensus 430 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (662)
.+....++..+.+.|+-.|...-..++....+.| -....+-.++...|+.++. ....+..+. ....+.|..+.++
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~~--i~~al~~~~-~d~~~~a~~l~~k 120 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISREA--TEKAMREAD-IDWAALARDQATR 120 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHHH--HHHHHHHHC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHHH--HHHHHHHcC-HhHHHHHHHHHHH
Confidence 3445566666777776655555555666555544 2234556666666765432 222233221 1223445554443
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCC
Q 006071 510 MVEKGVKENLDLVAKILEALLMRG 533 (662)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~~g 533 (662)
-......++......++..+.+.|
T Consensus 121 k~~~~~~~~~~~~~K~~~~L~rrG 144 (159)
T 3c1d_A 121 KYGEPLPTVFSEKVKIQRFLLYRG 144 (159)
T ss_dssp HHCSSCCCSHHHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC
Confidence 322212234445566677777777
No 300
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=34.25 E-value=70 Score=22.44 Aligned_cols=25 Identities=40% Similarity=0.284 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 588 SYEKVLDALLAAGKTLNAYSILFKI 612 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~~ 612 (662)
.+.-.++.+.+.|++++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3445667777778887776665553
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.07 E-value=2.3e+02 Score=24.41 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=11.2
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 006071 98 IESYGKKGIVQESVKIFDIMK 118 (662)
Q Consensus 98 ~~~~~~~g~~~~A~~~~~~~~ 118 (662)
++.+....++++|..++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 344555555555555555443
No 302
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.75 E-value=1.8e+02 Score=23.19 Aligned_cols=52 Identities=8% Similarity=-0.043 Sum_probs=27.9
Q ss_pred hcCChHHHHHHHHhcccCCCCC--CHHHHHHHHH------HHHhcCChhHHHHHHHHHHH
Q 006071 68 RVGKLNHARCILLDMPKKGVQW--DEDMFEVLIE------SYGKKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 68 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 119 (662)
..|++-+|-++|+.+-+....+ ....|..||. ...+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4467777766666666544333 3344444444 12334666666666655543
No 303
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=32.53 E-value=86 Score=23.42 Aligned_cols=11 Identities=18% Similarity=0.449 Sum_probs=5.4
Q ss_pred chhHHHHHHhh
Q 006071 638 KQADILSRMIR 648 (662)
Q Consensus 638 ~~a~~~~~~~~ 648 (662)
+.|+.+...+.
T Consensus 74 ~RAE~LK~~l~ 84 (117)
T 2cpt_A 74 DRAEKLKEYLK 84 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44555555443
No 304
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.93 E-value=1.1e+02 Score=23.60 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=30.6
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 006071 475 MIEDGHSPASSLFRSVMESLFEDG-RVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG 533 (662)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 533 (662)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.++..+..+...-+..+...|
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444555544332 3344444444 45566667766666655556655555555555555
No 305
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.78 E-value=1e+02 Score=24.18 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=33.4
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 006071 475 MIEDGHSPASSLFRSVMESLFEDG-RVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (662)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (662)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.++..+..+...-+..+...|-
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 4445665554432 3344444444 455677777777666666666665556666666653
No 306
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.67 E-value=3e+02 Score=25.03 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=14.5
Q ss_pred HHcCCcHHHHHHHHHHHHHh
Q 006071 347 FCKAEMYDRAIKLLDKLVEK 366 (662)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~ 366 (662)
+...|++++|+..|+.++..
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHH
Confidence 35678888888888877543
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.88 E-value=2.6e+02 Score=24.07 Aligned_cols=90 Identities=12% Similarity=0.086 Sum_probs=47.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhC--CCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006071 131 ALFKLILRRGRYMMAKRYFNKMLSE--GIEP----TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMIN 204 (662)
Q Consensus 131 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 204 (662)
--+..+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+.+.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3567888899999999998877432 1221 111122223322222222233333333422 334444555566
Q ss_pred HHhhcCChHHHHHHHHHHH
Q 006071 205 GYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 205 ~~~~~g~~~~a~~~~~~~~ 223 (662)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 6677777777777665543
No 308
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=30.77 E-value=72 Score=19.86 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=2.4
Q ss_pred HHHhcCCHHHHH
Q 006071 595 ALLAAGKTLNAY 606 (662)
Q Consensus 595 ~~~~~g~~~~A~ 606 (662)
.+...|+|++|+
T Consensus 49 SLmNrG~Yq~Al 60 (61)
T 3ph0_C 49 SLMNQGDYQRAL 60 (61)
T ss_dssp HHHHC-------
T ss_pred HHHccchHhHhh
Confidence 344555555553
No 309
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.76 E-value=2e+02 Score=22.89 Aligned_cols=51 Identities=2% Similarity=0.004 Sum_probs=31.0
Q ss_pred cCChhHHHHHHHHHhhCCCCC--CHHhHHHHHH-H-----HHhcCChHHHHHHHHHHHH
Q 006071 427 EGNPDSAFEIVKIMGRRGVPR--DADAYICLIE-S-----YLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 427 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 477 (662)
.|++=+|.++|+..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777776654444 3455555555 1 2345677777766666653
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.73 E-value=1.9e+02 Score=22.59 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=17.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHc
Q 006071 96 VLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRR 139 (662)
Q Consensus 96 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 139 (662)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 33333333333444444444444433333333333333333333
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.70 E-value=1.9e+02 Score=22.59 Aligned_cols=59 Identities=17% Similarity=0.283 Sum_probs=30.7
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 006071 475 MIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (662)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (662)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.++..+..+....+..+...|-
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 344455544332 23344444444555666666666665555566555556666666664
No 312
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.52 E-value=2.3e+02 Score=23.45 Aligned_cols=20 Identities=5% Similarity=0.076 Sum_probs=12.0
Q ss_pred CChhHHHHHHHHHHHcCCCc
Q 006071 105 GIVQESVKIFDIMKQLGVER 124 (662)
Q Consensus 105 g~~~~A~~~~~~~~~~g~~~ 124 (662)
.+.+.|+-++-+|.+.|..|
T Consensus 21 SDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 56666666666666655433
No 313
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.34 E-value=3.8e+02 Score=25.85 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=30.9
Q ss_pred HcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCC
Q 006071 138 RRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK-----LETAIRFFEDMKSRGIS 193 (662)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 193 (662)
+.++.+.|+..+..|++.|..|....-..+..+.-.-|. +..|...++.....|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 346777788888888777765544433333333333332 23445555555555543
No 314
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=29.65 E-value=2.3e+02 Score=23.04 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (662)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (662)
+....++..+.+.|+-.|...-..++....+.|.+. ...+-.++...|+.++. ....+..+......+.|..++++-
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~~~--I~~al~~~~~~de~e~a~~l~~Kk 126 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDDNI--AEDALILYTDKLQVEKGVTLAEKL 126 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCHHH--HHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCHHH--HHHHHHhCCchhHHHHHHHHHHHH
Confidence 345556666666666655555555666555444332 23445556666764332 222222111111234455555443
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Q 006071 511 VEK-GVKENLDLVAKILEALLMRG-HVEEALGRIDLMM 546 (662)
Q Consensus 511 ~~~-~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 546 (662)
... ...++......+...+.+.| .++.+..+++.+.
T Consensus 127 ~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 127 ANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 332 22222334455666677777 4555556666554
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.14 E-value=4.5e+02 Score=28.56 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=74.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHH
Q 006071 307 KLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPM 386 (662)
Q Consensus 307 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 386 (662)
.++..+...|..+.+.++..- ++.++..--.+..+|...|++++|...|+++- .++..+......
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA---------~gl~~~~~~~~~- 879 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS---------LVLYSHTSQFAV- 879 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC---------CTTCSSCCSCGG-
T ss_pred HHHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh---------hhcccCcccccc-
Confidence 356666777777766553322 34555555667888999999999999998861 122111111000
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HhHHHHHHHHHhc
Q 006071 387 IQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA----DAYICLIESYLRK 462 (662)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 462 (662)
......++.. .+.......-|..++..+...+-++-+.++-+.+.+.--.-|. ..|..+..+.+..
T Consensus 880 ---------~~~~~~ll~~-~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 880 ---------LREFQEIAEK-YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp ---------GHHHHHHHHH-TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------hhhhhhccCc-ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 0001111111 0111112236778888888888888888888877763222233 3566666666544
Q ss_pred C
Q 006071 463 G 463 (662)
Q Consensus 463 ~ 463 (662)
|
T Consensus 950 g 950 (950)
T 4gq2_M 950 G 950 (950)
T ss_dssp C
T ss_pred C
Confidence 3
No 316
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.14 E-value=1.9e+02 Score=21.97 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHh
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMG 441 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~ 441 (662)
...++.-|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3445556666666666666666654
No 317
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.07 E-value=2.5e+02 Score=23.30 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=16.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 006071 461 RKGEPADAKTALDSMIEDGHSPASSLFRSVMESL 494 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (662)
+..+++.|+-.+-+|++.|-.|....-..++.+.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3345555566666665555444444333333333
No 318
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.69 E-value=2.5e+02 Score=23.30 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=10.3
Q ss_pred CChhHHHHHHHHHHHcC
Q 006071 105 GIVQESVKIFDIMKQLG 121 (662)
Q Consensus 105 g~~~~A~~~~~~~~~~g 121 (662)
.+.+.|+-++-+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 55666666666666655
No 319
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.87 E-value=2.7e+02 Score=23.35 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=17.4
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHHcCCCcC
Q 006071 94 FEVLIESYGK---KGIVQESVKIFDIMKQLGVERS 125 (662)
Q Consensus 94 ~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~ 125 (662)
+-.+|+++.+ -.+.+.|+-++-+|.+.|..|.
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~ 69 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPN 69 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHH
Confidence 3344444433 3566666666666666664343
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.53 E-value=2.1e+02 Score=22.14 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHHHc
Q 006071 107 VQESVKIFDIMKQL 120 (662)
Q Consensus 107 ~~~A~~~~~~~~~~ 120 (662)
.-.|.++++.+.+.
T Consensus 37 ~~sa~ei~~~l~~~ 50 (145)
T 2fe3_A 37 HPTADDIYKALEGK 50 (145)
T ss_dssp CCCHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHh
Confidence 33344444444433
No 321
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.16 E-value=1.1e+02 Score=24.37 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc--CCCcCHHhHHHHHHHHHHcCC
Q 006071 94 FEVLIESYGKKGIVQESVKIFDIMKQL--GVERSVKSYDALFKLILRRGR 141 (662)
Q Consensus 94 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~g~ 141 (662)
-..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 334444444444444555555555544 333444444444445554443
No 322
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=26.34 E-value=54 Score=22.94 Aligned_cols=12 Identities=25% Similarity=0.160 Sum_probs=5.4
Q ss_pred CCHHHHHHHHHH
Q 006071 600 GKTLNAYSILFK 611 (662)
Q Consensus 600 g~~~~A~~~~~~ 611 (662)
|+.++|+++|++
T Consensus 33 G~k~~A~~~Ykk 44 (89)
T 3eab_A 33 GQKEQAVEWYKK 44 (89)
T ss_dssp SSGGGSHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444444444444
No 323
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=26.02 E-value=1.6e+02 Score=23.94 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=9.5
Q ss_pred HhcCChHHHHHHHHhc
Q 006071 67 GRVGKLNHARCILLDM 82 (662)
Q Consensus 67 ~~~g~~~~a~~~~~~~ 82 (662)
+..|+.+.+..++..-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 4556666666666543
No 324
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.74 E-value=1.6e+02 Score=23.92 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=5.2
Q ss_pred hCCCHHHHHHHH
Q 006071 278 DAGKMVEVQKVL 289 (662)
Q Consensus 278 ~~g~~~~a~~~~ 289 (662)
..|+.+.+..++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444444443
No 325
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=25.65 E-value=3.3e+02 Score=23.57 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=22.2
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHhccCCHHHHHHHHH
Q 006071 531 MRGHVEEALGRIDLMMQSGSVPNF-----DSLLSVLSEKGKTIAAVKLLD 575 (662)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~~~~~~g~~~~A~~~~~ 575 (662)
..|+.....++++.+.+.|..++. .+.+......|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344443344555555555555441 234444445566655555554
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.83 E-value=1.8e+02 Score=22.17 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=34.1
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcC
Q 006071 440 MGRRGVPRDADAYICLIESYLRKG-EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG 498 (662)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (662)
+.+.|+.++.. -..++..+...+ .+-.|.++++.+.+.+...+..|....+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 45566665543 334445555555 56677788888777665566666666666655554
No 327
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.50 E-value=1.7e+02 Score=23.12 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHh
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMG 441 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~ 441 (662)
...++.-|...|+.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3445556666666666666666654
No 328
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=24.31 E-value=1.6e+02 Score=19.65 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 006071 591 KVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (662)
.++..+...|++++|...|-+.+...+.| .. |+..|.+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP--~~---LL~i~q~ 59 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP--QQ---LLQVLQQ 59 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC--HH---HHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH--HH---HHHHHHh
Confidence 46778888888888888777766654432 22 5555544
No 329
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.02 E-value=5.3e+02 Score=25.42 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=13.8
Q ss_pred HHhHHHHHHHHHHcCChhHHHHHHHHH
Q 006071 126 VKSYDALFKLILRRGRYMMAKRYFNKM 152 (662)
Q Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 152 (662)
...++.+++.|...+.++.|..+..+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 334455555555555555555555544
No 330
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.16 E-value=3.3e+02 Score=22.67 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=30.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCC
Q 006071 461 RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR-----VQTASRVMKSMVEKGVK 516 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~ 516 (662)
+..+++.|+-.+-+|++.| .|....-..++.+....|. ...|...++.....|..
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4466777777777777767 5555555555555555443 23344444444444543
No 331
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.09 E-value=1.6e+02 Score=22.87 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 006071 500 VQTASRVMKSMVEKGVKENLDLVAKILEALLMRG 533 (662)
Q Consensus 500 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 533 (662)
.-.|.++++.+.+.++..+..+...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4455555555555555555555444555555555
No 332
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=22.55 E-value=1.5e+02 Score=25.96 Aligned_cols=77 Identities=12% Similarity=0.001 Sum_probs=33.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCH-----HHHHHHHhccCCH
Q 006071 496 EDGRVQTASRVMKSMVEKGVKENLDL--VAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNF-----DSLLSVLSEKGKT 567 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-----~~~~~~~~~~g~~ 567 (662)
..|......++++.+.+.|..++... -...+......|+.+-+. .+++ .+..++. .+.+......|+.
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~ 266 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ----RLLEQEHIEINDTDSDGKTALLLAVELKLK 266 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHH----HHHHSSSCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH----HHHhccCCCccccCCCCCcHHHHHHHcCcH
Confidence 34444444555566666655443211 011233334556654433 3333 3444431 2333333445655
Q ss_pred HHHHHHHHH
Q 006071 568 IAAVKLLDF 576 (662)
Q Consensus 568 ~~A~~~~~~ 576 (662)
+-+.-+++.
T Consensus 267 ~i~~~Ll~~ 275 (285)
T 1wdy_A 267 KIAELLCKR 275 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 554444443
No 333
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.10 E-value=1.9e+02 Score=22.60 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=36.5
Q ss_pred HHhhCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCC
Q 006071 439 IMGRRGVPRDADAYICLIESYLRKG-EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR 499 (662)
Q Consensus 439 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 499 (662)
.+.+.|+.++..= ..++..+...+ .+-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3455666655432 33444454554 566788888888776655666666666666666554
No 334
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.01 E-value=1.9e+02 Score=22.52 Aligned_cols=13 Identities=8% Similarity=0.164 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHcC
Q 006071 109 ESVKIFDIMKQLG 121 (662)
Q Consensus 109 ~A~~~~~~~~~~g 121 (662)
.|.++++.+.+.+
T Consensus 35 ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 35 TPDDILGEVRKTA 47 (145)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhhC
Confidence 4444444444333
No 335
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.52 E-value=1.9e+02 Score=19.42 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006071 142 YMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL 173 (662)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 173 (662)
.-.+.++++.+.+.++..+..|....+..+..
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 33444444444443333333333333333333
No 336
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.30 E-value=2.5e+02 Score=22.76 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=10.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCcC
Q 006071 103 KKGIVQESVKIFDIMKQLGVERS 125 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~~~~ 125 (662)
..|+.+.-.++.+.+.+.|..++
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HcCCcchHHHHHHHHHHCCCCCC
Confidence 34444444445555555554443
No 337
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.75 E-value=3.8e+02 Score=22.57 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=14.1
Q ss_pred HHHHhhcCChHHHHHHHHHHHH
Q 006071 203 INGYNRFKKMDEAEKLFAEMKE 224 (662)
Q Consensus 203 l~~~~~~g~~~~a~~~~~~~~~ 224 (662)
+..|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3456666777777777766654
No 338
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.75 E-value=4.3e+02 Score=23.19 Aligned_cols=202 Identities=12% Similarity=0.070 Sum_probs=93.1
Q ss_pred HHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCH---HhHHHHHHHHHHcCCh
Q 006071 66 LGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSV---KSYDALFKLILRRGRY 142 (662)
Q Consensus 66 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~l~~~~~~~g~~ 142 (662)
.+..|+.+-+..+++.-...... + - ...+...+..|+.+-+..++ +.|..++. ..++.+ ...+..|+.
T Consensus 38 A~~~g~~~~v~~Ll~~g~~~~~~-~--g-~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~L-~~A~~~g~~ 108 (285)
T 3kea_A 38 AIADNNVRLVCTLLNAGALKNLL-E--N-EFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTAL-YYAVDSGNM 108 (285)
T ss_dssp HHHTTCHHHHHHHHHTTGGGSCC-T--T-CCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCHH-HHHHHTTCH
T ss_pred HHHcCCHHHHHHHHhCCCCCCCC-C--C-CCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcHH-HHHHHcCCH
Confidence 34567777776666653322111 1 1 12233344566665444443 34443332 222333 333456665
Q ss_pred hHHHHHHHHHHhCCCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChHHHHHH
Q 006071 143 MMAKRYFNKMLSEGIEPTRH---TYNVMLWGFFLSLKLETAIRFFEDMKSRGISL-DVVTYNTMINGYNRFKKMDEAEKL 218 (662)
Q Consensus 143 ~~A~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~ 218 (662)
+-+.-+++. |..++.. .+...+...+..|+.+-+.-++ +.|..+ +...-.+.+...+..|+.+-+.-+
T Consensus 109 ~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 109 QTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL----SEIPSTFDLAILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp HHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH----TTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence 544444333 3333321 1123344445667765444443 334332 211223445556677887766666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 006071 219 FAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVE 294 (662)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 294 (662)
++.-..... .+..-++..+...+..|+. ++.+.+.+.|..++.... .-...|+.+-+.-+++.-..
T Consensus 181 l~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~g~~ 246 (285)
T 3kea_A 181 LDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEKHVE 246 (285)
T ss_dssp HHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHHHHH
T ss_pred HHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHcCCC
Confidence 655433221 1212222223333445554 355556666766655432 12446666666666555443
No 339
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.63 E-value=1.9e+02 Score=23.05 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=32.1
Q ss_pred HHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCC
Q 006071 117 MKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE--GIEPTRHTYNVMLWGFFLSLK 176 (662)
Q Consensus 117 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~ 176 (662)
+.+.|...+.. -..++..+...+.+-.|.++++.+.+. ++..+..|.---+..+...|-
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34456555433 344556666666666777777777655 444454443334445555543
No 340
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.52 E-value=2.4e+02 Score=20.14 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=12.7
Q ss_pred HHHHHHHcCCCCcHHhHHHHHHHHHhcC
Q 006071 471 ALDSMIEDGHSPASSLFRSVMESLFEDG 498 (662)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (662)
+.+++..-|+.|+..+...++..|...+
T Consensus 31 L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 31 LAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3333333355555555555554444433
No 341
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.44 E-value=83 Score=19.96 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006071 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGY 241 (662)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (662)
++|.+.|.+|++..-.++..+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666655432233445666666655
Done!