BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006072
(662 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 122 bits (307), Expect = 4e-28, Method: Composition-based stats.
Identities = 73/186 (39%), Positives = 99/186 (53%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
+EL ++ AA +G+ +++ LI GAD N +D DGR+PLH AA G++EI+ LI KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N KD+ G TPL A K G +++K ++
Sbjct: 62 DVNAKDSDGRTPLHYAAK-------------------------------EGHKEIVKLLI 90
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
S G D N +D D RTPLH AA EG + KLL+ GA V D G TPLD R GN+
Sbjct: 91 SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 558 LIKLLE 563
++KLLE
Sbjct: 151 IVKLLE 156
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 66/129 (51%), Gaps = 13/129 (10%)
Query: 344 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
+G K + LL K +D+ K H + E H ++ +L LI G
Sbjct: 47 EGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG-----------HKEIVKL--LISKG 93
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
AD N D DGR+PLH AA G++EI+ LI KG D+N D+ G TPL A ++GN+
Sbjct: 94 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVK 153
Query: 464 LLVKEGASL 472
LL K+G L
Sbjct: 154 LLEKQGGWL 162
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 49/89 (55%)
Query: 474 VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 533
+ E G L A G+ D +K ++ NG D N D D RTPLH AA EG + KLL+ G
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 534 ASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
A V KD G TPL G+K ++KLL
Sbjct: 61 ADVNAKDSDGRTPLHYAAKEGHKEIVKLL 89
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 120 bits (302), Expect = 2e-27, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 99/186 (53%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
+EL ++ AA +G+ +++ L+ GADPN +D DGR+PLH AA G++EI+ L+ KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D N KD+ G TPL A + G+ +++K +L
Sbjct: 62 DPNAKDSDGRTPLHYAAENGH-------------------------------KEIVKLLL 90
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
S G DPN +D D RTPLH AA G + KLL+ GA D G TPLD R GN+
Sbjct: 91 SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 558 LIKLLE 563
++KLLE
Sbjct: 151 IVKLLE 156
Score = 75.5 bits (184), Expect = 9e-14, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 13/129 (10%)
Query: 344 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
+G K + LL K +D K H + H ++ +L L+ G
Sbjct: 47 NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG-----------HKEIVKL--LLSKG 93
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
ADPN D DGR+PLH AA G++EI+ L+ KG D N D+ G TPL A ++GN+
Sbjct: 94 ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVK 153
Query: 464 LLVKEGASL 472
LL K+G L
Sbjct: 154 LLEKQGGWL 162
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 48/89 (53%)
Query: 474 VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 533
+ E G L A G+ D +K +L NG DPN D D RTPLH AA G + KLL+ G
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Query: 534 ASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
A KD G TPL G+K ++KLL
Sbjct: 61 ADPNAKDSDGRTPLHYAAENGHKEIVKLL 89
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 119 bits (297), Expect = 8e-27, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 97/186 (52%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
+EL ++ AA +G+ +++ LI GAD N +D DGR+PLH AA G++E++ LI KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N KD+ G TPL A + G+ LL+ +GA
Sbjct: 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA--------------------------- 94
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
D N +D D RTPLH AA G + KLL+ GA V D G TPLD R GN+
Sbjct: 95 ----DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 558 LIKLLE 563
++KLLE
Sbjct: 151 VVKLLE 156
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/129 (37%), Positives = 67/129 (51%), Gaps = 13/129 (10%)
Query: 344 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
+G K + LL K +D+ K H H AE H ++ +L LI G
Sbjct: 47 NGHKEVVKLLISKGADVNAKDSDGRTPLH---HAAENG--------HKEVVKL--LISKG 93
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
AD N D DGR+PLH AA G++E++ LI KG D+N D+ G TPL A ++GN+
Sbjct: 94 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVK 153
Query: 464 LLVKEGASL 472
LL K+G L
Sbjct: 154 LLEKQGGWL 162
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 48/89 (53%)
Query: 474 VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 533
+ E G L A G+ D +K ++ NG D N D D RTPLH AA G + KLL+ G
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 534 ASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
A V KD G TPL G+K ++KLL
Sbjct: 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLL 89
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 114 bits (284), Expect = 2e-25, Method: Composition-based stats.
Identities = 68/186 (36%), Positives = 97/186 (52%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
+EL ++ AA +G+ +++ L+ GAD N +D DG++PLHLAA G++E++ L+ +G
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D N KD+ G TPL A + G+ LL L
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLL-------------------------------L 90
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
S G DPN +D D +TPLH+AA G + KLL+ GA D G TPLD R GN+
Sbjct: 91 SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 558 LIKLLE 563
++KLLE
Sbjct: 151 VVKLLE 156
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 13/129 (10%)
Query: 344 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
+G K + LL + +D K H++ H ++ +L L+ G
Sbjct: 47 NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG-----------HKEVVKL--LLSQG 93
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
ADPN D DG++PLHLAA G++E++ L+ +G D N D+ G TPL A ++GN+
Sbjct: 94 ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVK 153
Query: 464 LLVKEGASL 472
LL K+G L
Sbjct: 154 LLEKQGGWL 162
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 48/89 (53%)
Query: 474 VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 533
+ E G L A G+ D +K +L NG D N D D +TPLH+AA G + KLL+ G
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 534 ASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
A KD G TPL G+K ++KLL
Sbjct: 61 ADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 64/187 (34%), Positives = 95/187 (50%), Gaps = 31/187 (16%)
Query: 379 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 438
+L K+ AA G ++ L+ GAD N D DG +PLHLAA G+ EI+ L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 439 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS 498
+N KD G TPL A + G+ +L+K GA
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---------------------------- 92
Query: 499 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL 558
D N +D D TPLH+AA EG + ++L++AGA V +D++G TP D GN+++
Sbjct: 93 ---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 559 IKLLEDA 565
++L+ A
Sbjct: 150 AEVLQKA 156
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 404
G+K+L G++ ++R+ ++ + + ++ AA G L +E L++AGA
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 405 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL 464
D N D DG +PLHLAA G+ EI+ L++ G D+N KD G TPL A + G+ +
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 119
Query: 465 LVKEGASLNVEE 476
L+K GA +N ++
Sbjct: 120 LLKAGADVNAQD 131
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 96.3 bits (238), Expect = 4e-20, Method: Composition-based stats.
Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 31/187 (16%)
Query: 379 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 438
+L K+ AA G ++ L+ GAD N D DG +PLHLAA G+ EI+ L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 439 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS 498
+N KD G TPL A + G+ +L+K GA
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---------------------------- 92
Query: 499 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL 558
D N +D D TPLH+AA EG + ++L++AGA V +D++G TP D G++++
Sbjct: 93 ---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 559 IKLLEDA 565
++L+ A
Sbjct: 150 AEVLQKA 156
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 404
G+K+L G++ ++R+ ++ + + ++ AA G L +E L++AGA
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 405 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL 464
D N D DG +PLHLAA G+ EI+ L++ G D+N KD G TPL A + G+ +
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 119
Query: 465 LVKEGASLNVEE 476
L+K GA +N ++
Sbjct: 120 LLKAGADVNAQD 131
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 94.7 bits (234), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N D DG +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N KD G TPL A + G+ +L+K GA
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--------------------------- 104
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
D N +D D TPLH+AA EG + ++L++AGA V +D++G T D GN++
Sbjct: 105 ----DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNED 160
Query: 558 LIKLLE 563
L ++L+
Sbjct: 161 LAEILQ 166
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 404
G+K+L G++ ++R+ ++ + + ++ AA G L +E L++AGA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 405 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL 464
D N D DG +PLHLAA G+ EI+ L++ G D+N KD G TPL A + G+ +
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 131
Query: 465 LVKEGASLNVEE 476
L+K GA +N ++
Sbjct: 132 LLKAGADVNAQD 143
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 93.2 bits (230), Expect = 4e-19, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 412 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS 471
+GR+PLHLAA G+ E++ L++ G D+N KD G TPL A + G+ LL++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 472 LNVEEAG--SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLL 529
+N ++ + L A G +++K +L G D N +D + RTPLH+AA G + KLL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 530 VEAGA 534
+EAGA
Sbjct: 121 LEAGA 125
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 53/84 (63%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA +G L ++ L+ AGAD N D +GR+PLHLAA G+ E++ L++ G D+N KD G
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 101
Query: 447 NTPLLEAIKYGNDGAASLLVKEGA 470
TPL A + G+ LL++ GA
Sbjct: 102 RTPLHLAARNGHLEVVKLLLEAGA 125
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 484 AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWG 543
A G +++K +L G D N +D + RTPLH+AA G + KLL+EAGA V KD+ G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 544 NTPLDEGRMCGNKNLIKLLEDA 565
TPL G+ ++KLL +A
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEA 90
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 93.2 bits (230), Expect = 4e-19, Method: Composition-based stats.
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N TD+ G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N DN+G TPL A G+ +L+K GA
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA--------------------------- 104
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
D N +DY+ TPLH+AA +G + ++L++ GA V +D++G T D GN++
Sbjct: 105 ----DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 558 LIKLLE 563
L ++L+
Sbjct: 161 LAEILQ 166
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 54/87 (62%)
Query: 381 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 440
A ++ AA +G L +E L++ GAD N DY+G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 441 LKDNFGNTPLLEAIKYGNDGAASLLVK 467
+D FG T +I GN+ A +L K
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N TD DG +PLHLAAS G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N D G TPL A A G ++++ +L
Sbjct: 72 DVNASDLTGITPLHLA-------------------------------AATGHLEIVEVLL 100
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
+G D N D D TPLH+AA G + ++L++ GA V +D++G T D GN++
Sbjct: 101 KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 558 LIKLLE 563
L ++L+
Sbjct: 161 LAEILQ 166
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/132 (34%), Positives = 79/132 (59%), Gaps = 3/132 (2%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 404
G+K+L G++ ++R+ + + + + ++ L + AA +G L +E L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRI-LMANGADVNATDNDGYTPLHL--AASNGHLEIVEVLLKNGA 71
Query: 405 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL 464
D N +D G +PLHLAA+ G+ EI+ L++ G D+N DN G+TPL A KYG+ +
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 465 LVKEGASLNVEE 476
L+K GA +N ++
Sbjct: 132 LLKHGADVNAQD 143
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N D+ G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N KD+ G TPL A + RG ++++ +L
Sbjct: 72 DVNAKDSLGVTPLHLAAR-------------------------------RGHLEIVEVLL 100
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
NG D N D TPLH+AA G + ++L++ GA V +D++G T D GN++
Sbjct: 101 KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 558 LIKLLE 563
L ++L+
Sbjct: 161 LAEILQ 166
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 50/81 (61%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA G L +E L++ GAD N +D G +PLHLAA RG+ EI+ L++ G D+N +D FG
Sbjct: 87 AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146
Query: 447 NTPLLEAIKYGNDGAASLLVK 467
T +I GN+ A +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 52/102 (50%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535
+ G L A G D ++ +++NG D N RD+ TPLH+AA G + ++L++ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 536 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGF 577
V KD G TPL G+ ++++L + HGF
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGF 114
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 89.4 bits (220), Expect = 7e-18, Method: Composition-based stats.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N D G++PLHLAA +G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N D G+TPL A YG+ +L+K GA +N + F
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF----------------- 114
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
TPLH+AA G + ++L++ GA V +D++G T D GN++
Sbjct: 115 --------------TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 558 LIKLLE 563
L ++L+
Sbjct: 161 LAEILQ 166
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 50/81 (61%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA +G L +E L++ GAD N TD G +PLHLAA G+ EI+ L++ G D+N +D FG
Sbjct: 87 AALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146
Query: 447 NTPLLEAIKYGNDGAASLLVK 467
T +I GN+ A +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N +D+ G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N D+ G TPL A RG ++++ +L
Sbjct: 72 DVNADDSLGVTPLH-------------------------------LAADRGHLEVVEVLL 100
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
NG D N D++ TPLH+AA+ G + ++L++ GA V +D++G T D GN++
Sbjct: 101 KNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 558 LIKLLE 563
L ++L+
Sbjct: 161 LAEILQ 166
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 404
G+K+L G++ ++R+ + + + S H L + AAY G L +E L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRI-LMANGADVNASDHVGWTPLHL--AAYFGHLEIVEVLLKNGA 71
Query: 405 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL 464
D N D G +PLHLAA RG+ E++ L++ G D+N D+ G TPL A G+ +
Sbjct: 72 DVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEV 131
Query: 465 LVKEGASLNVEE 476
L+K GA +N ++
Sbjct: 132 LLKHGADVNAQD 143
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA G L +E L++ GAD N D++G +PLHLAA+ G+ EI+ L++ G D+N +D FG
Sbjct: 87 AADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFG 146
Query: 447 NTPLLEAIKYGNDGAASLLVK 467
T +I GN+ A +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 97/181 (53%), Gaps = 13/181 (7%)
Query: 382 LKVNSAAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 440
L V + AY G L +L E ++ + RTD D R+ LH A S G+ EI+ FL+Q GV +N
Sbjct: 8 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 441 LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN-VEEAGSFLCT----AVARGDSDLLKR 495
KD+ G +PL A G D L+ +GA +N V + G CT A ++ ++
Sbjct: 68 DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG---CTPLHYAASKNRHEIAVM 124
Query: 496 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL----DEGR 551
+L G +P+ +D+ T +H AA++G M +L+ AS +D GNTPL DE R
Sbjct: 125 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 184
Query: 552 M 552
+
Sbjct: 185 V 185
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L+ GA+P+ D+ + +H AA++G +++ L+ N++D GNTPL A
Sbjct: 125 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 184
Query: 459 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDL-LKRVL 497
A LLV +GAS+ +E VA+G L LKR++
Sbjct: 185 VEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMV 224
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N D G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N D G+TPL A +G+ +L+K GA +N ++
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD--------------------- 110
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
NGI TPLH+AA+ G + ++L++ GA V +D++G T D GN++
Sbjct: 111 DNGI----------TPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Query: 558 LIKLLE 563
L ++L+
Sbjct: 161 LAEILQ 166
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 52/81 (64%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA+ G L +E L++ GAD N D +G +PLHLAA+RG+ EI+ L++ G D+N +D FG
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
Query: 447 NTPLLEAIKYGNDGAASLLVK 467
T +I GN+ A +L K
Sbjct: 147 KTAFDISINNGNEDLAEILQK 167
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 97/181 (53%), Gaps = 13/181 (7%)
Query: 382 LKVNSAAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 440
L V + AY G L +L E ++ + RTD D R+ LH A S G+ EI+ FL+Q GV +N
Sbjct: 9 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 68
Query: 441 LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN-VEEAGSFLCT----AVARGDSDLLKR 495
KD+ G +PL A G D L+ +GA +N V + G CT A ++ ++
Sbjct: 69 DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG---CTPLHYAASKNRHEIAVM 125
Query: 496 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL----DEGR 551
+L G +P+ +D+ T +H AA++G M +L+ AS +D GNTPL DE R
Sbjct: 126 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 185
Query: 552 M 552
+
Sbjct: 186 V 186
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L+ GA+P+ D+ + +H AA++G +++ L+ N++D GNTPL A
Sbjct: 126 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 185
Query: 459 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDL-LKRVL 497
A LLV +GAS+ +E VA+G L LKR++
Sbjct: 186 VEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMV 225
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N D G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D++ D FG TPL A +G+ ++++ +L
Sbjct: 72 DVDASDVFGYTPLHLAAYWGH-------------------------------LEIVEVLL 100
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
NG D N D D TPLH+AA G + ++L++ GA V +D++G T D GN++
Sbjct: 101 KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 558 LIKLLE 563
L ++L+
Sbjct: 161 LAEILQ 166
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AAY G L +E L++ GAD N D DG +PLHLAA GY EI+ L++ G D+N +D FG
Sbjct: 87 AAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
Query: 447 NTPLLEAIKYGNDGAASLLVK 467
T +I GN+ A +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
GRK+L G++ ++R+ +D+ + L L AAY G L +E L++ G
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHL----AAYSGHLEIVEVLLKHG 70
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
AD + +D G +PLHLAA G+ EI+ L++ G D+N D+ G TPL A K+G
Sbjct: 71 ADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVE 130
Query: 464 LLVKEGASLNVEE 476
+L+K GA +N ++
Sbjct: 131 VLLKHGADVNAQD 143
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 388 AYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AY G L +L+ I A RTD D R+ LH A S G+ EI+ FL+Q GV +N KD+ G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLN-VEEAGSFLCT----AVARGDSDLLKRVLSNGI 501
+PL A G D L+ +GA +N V + G CT A ++ ++ +L G
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGA 130
Query: 502 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL----DEGRM 552
+P+ +D+ T +H AA++G M +L+ AS +D GNTPL DE R+
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 5/208 (2%)
Query: 343 CDGRKVLTNLL-QGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIR 401
C ++ NL GK +L+ + L + ++ AL +A H ++ +E L++
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEI--VEFLLQ 61
Query: 402 AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGA 461
G N D G SPLH+AAS G +EI+ L+ KG +N + G TPL A
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121
Query: 462 ASLLVKEGASLNVEEA--GSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAAS 519
A +L++ GA+ + ++ + + A A+G+ ++ +L N +D + TPLH+A
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACD 181
Query: 520 EGLYLMAKLLVEAGASVFPKDRWGNTPL 547
E AK LV GAS++ +++ TPL
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPL 209
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L+ GA+P+ D+ + +H AA++G +++ L+ N++D GNTPL A
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 459 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNG 500
A LV +GAS+ +E VA+G L+ + L+ G
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEG 226
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 480 FLCTAVARGDSDLLK-RVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 538
+C G D LK R+L++ D D RT LH A S G + + L++ G V
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 539 KDRWGNTPLDEGRMCGNKNLIKLL 562
KD G +PL G ++K L
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKAL 92
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 388 AYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AY G L +L+ I A RTD D R+ LH A S G+ EI+ FL+Q GV +N KD+ G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLN-VEEAGSFLCT----AVARGDSDLLKRVLSNGI 501
+PL A G D L+ +GA +N V + G CT A ++ ++ +L G
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGA 130
Query: 502 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL----DEGRM 552
+P+ +D+ T +H AA++G M +L+ AS +D GNTPL DE R+
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 5/208 (2%)
Query: 343 CDGRKVLTNLL-QGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIR 401
C ++ NL GK +L+ + L + ++ AL +A H ++ +E L++
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEI--VEFLLQ 61
Query: 402 AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGA 461
G N D G SPLH+AAS G +EI+ L+ KG +N + G TPL A
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121
Query: 462 ASLLVKEGASLNVEEA--GSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAAS 519
A +L++ GA+ + ++ + + A A+G+ ++ +L N +D + TPLH+A
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACD 181
Query: 520 EGLYLMAKLLVEAGASVFPKDRWGNTPL 547
E AK LV GAS++ +++ TPL
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPL 209
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L+ GA+P+ D+ + +H AA++G +++ L+ N++D GNTPL A
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 459 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNG 500
A LV +GAS+ +E VA+G L+ + L+ G
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEG 226
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 480 FLCTAVARGDSDLLK-RVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 538
+C G D LK R+L++ D D RT LH A S G + + L++ G V
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 539 KDRWGNTPLDEGRMCGNKNLIKLL 562
KD G +PL G ++K L
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKAL 92
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 82.8 bits (203), Expect = 5e-16, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N D G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N D+ G TPL A +G+ L + E +L
Sbjct: 72 DVNAVDHAGMTPLRLAALFGH-------------LEIVEV------------------LL 100
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
NG D N D + TPLH+AA G + ++L++ GA V +D++G T D GN++
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 558 LIKLLE 563
L ++L+
Sbjct: 161 LAEILQ 166
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 404
G+K+L G++ ++R+ ++ +A ++ AA++G L +E L++ GA
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGA---DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 405 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL 464
D N D+ G +PL LAA G+ EI+ L++ G D+N D G+TPL A +G+ +
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 465 LVKEGASLNVEE 476
L+K GA +N ++
Sbjct: 132 LLKNGADVNAQD 143
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA G L +E L++ GAD N D +G +PLHLAA G+ EI+ L++ G D+N +D FG
Sbjct: 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 447 NTPLLEAIKYGNDGAASLLVK 467
T +I GN+ A +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 82.8 bits (203), Expect = 6e-16, Method: Composition-based stats.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 31/185 (16%)
Query: 379 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 438
+L K+ AA G ++ L+ GAD N D+ GR+PLH+AA+ G+ EI+ L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 439 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS 498
+N D G TPL A G+ +L+K GA +N ++A
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDA--------------------- 99
Query: 499 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL 558
GI TPL++AA G + ++L++ GA V +D++G T D GN++L
Sbjct: 100 TGI----------TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDL 149
Query: 559 IKLLE 563
++L+
Sbjct: 150 AEILQ 154
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 3/132 (2%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 404
G+K+L G++ ++R+ + + + H L + +A H ++ +E L+R GA
Sbjct: 3 GKKLLEAARAGQDDEVRI-LMANGADANAYDHYGRTPLHMAAAVGHLEI--VEVLLRNGA 59
Query: 405 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL 464
D N D +G +PLHLAAS G+ EI+ L++ G D+N KD G TPL A +G+ +
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEV 119
Query: 465 LVKEGASLNVEE 476
L+K GA +N ++
Sbjct: 120 LLKHGADVNAQD 131
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 82.0 bits (201), Expect = 9e-16, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N D G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N +D G TPL A G+ +L+K GA +N ++A
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDA-------------------- 111
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
Y L TPLH+AA G + ++L++ GA V +D++G T D GN++
Sbjct: 112 ----------YGL-TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 558 LIKLLE 563
L ++L+
Sbjct: 161 LAEILQ 166
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
G+K+L G++ ++R+ +D+ H + L L AA+ G +E L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHL----AAWIGHPEIVEVLLKHG 70
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
AD N D DG +PLHLAA G+ EI+ L++ G D+N +D +G TPL A G+
Sbjct: 71 ADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVE 130
Query: 464 LLVKEGASLNVEE 476
+L+K GA +N ++
Sbjct: 131 VLLKHGADVNAQD 143
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 50/81 (61%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA +G L +E L++ GAD N D G +PLHLAA RG+ EI+ L++ G D+N +D FG
Sbjct: 87 AADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFG 146
Query: 447 NTPLLEAIKYGNDGAASLLVK 467
T +I GN+ A +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 84/178 (47%), Gaps = 34/178 (19%)
Query: 373 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGR--SPLHLAASRGYEEIMT 430
IS +E ++ AA GD+ ++ L + N D +GR +PLH AA ++
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 431 FLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS 490
+L+Q G D++ KD G PL A YG+ A LLVK GA +NV + F
Sbjct: 64 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 113
Query: 491 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD 548
TPLH AA++G Y + KLL++ GA K+R GNTPLD
Sbjct: 114 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 150
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 3/127 (2%)
Query: 439 INLKDNFGNTPLLEAIKYGNDGAASLL--VKEGASLNVE-EAGSFLCTAVARGDSDLLKR 495
I+L ++ + LLEA K G+ L V+ ++E + L A +++
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 496 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 555
+L +G D + +D PLH A S G Y +A+LLV+ GA V D W TPL E G
Sbjct: 65 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 124
Query: 556 KNLIKLL 562
+ KLL
Sbjct: 125 YEICKLL 131
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N TD G +PLHLAA+ G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N D G+TPL A G+ +L+K GA +N + GD
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW---------GD-------- 114
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
TPLH+AA G + ++L++ GA V +D++G T D GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 558 LIKLLE 563
L ++L+
Sbjct: 161 LAEILQ 166
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA G L +E L++ GAD N D G +PLHLAA G+ EI+ L++ G D+N +D FG
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 447 NTPLLEAIKYGNDGAASLLVK 467
T +I GN+ A +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 100/186 (53%), Gaps = 5/186 (2%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKDNF 445
AA + L ++ LI+AGA + D +G + LHLAA +G+ E++ +L+ G +D+N +D+
Sbjct: 51 AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 446 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT--AVARGDSDLLKRVLSNGIDP 503
G TP++ A +Y + LL+ +G+ +N+ + +C A G D+ + +L+ D
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 504 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
+ + +PLH+AA E Y L + + V K++ G TPL + N + L+
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL--NSQVWSALQ 228
Query: 564 DAKSTQ 569
+K+ Q
Sbjct: 229 MSKALQ 234
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Query: 414 RSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN 473
RSPLH AA G+ +I L+Q G +I+ TPL+EA + + A L+K GA ++
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 474 VEEAGSFLC--TAVARGDSDLLKRVLSNG-IDPNTRDYDLRTPLHVAASEGLYLMAKLLV 530
++A C A +G ++++ +LSNG +D N +D TP+ A + KLL+
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 531 EAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK 566
G+ + +D N L G ++ ++L AK
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 349 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNR 408
L LL K SD+ ++ + +I H AA+ G + E L+ A D +
Sbjct: 126 LVKLLLSKGSDINIRDNEENICLHW-------------AAFSGCVDIAEILLAAKCDLHA 172
Query: 409 TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL 450
+ G SPLH+AA + + + + D+ LK+ G TPL
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 59/183 (32%), Positives = 86/183 (46%), Gaps = 31/183 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ LI GAD N D G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D++ D +G TPL A G+ +L+K GA
Sbjct: 72 DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA--------------------------- 104
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
D N D TPLH+AA EG + ++L++ GA V +D++G T D GN++
Sbjct: 105 ----DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 558 LIK 560
L K
Sbjct: 161 LAK 163
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535
+ G L A G D ++ +++NG D N D TPLH+AA G + ++L++ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 536 VFPKDRWGNTPLDEGRMCGNKNLIKLL 562
V D +G TPL M G+ ++++L
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVL 99
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N TD G +PLHLAA+ G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N D G+TPL A G+ +L+K GA +N + GD
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW---------GD-------- 114
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
TPLH+AA G + ++L++ GA V +D++G T D GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 558 LIKLLE 563
L ++L+
Sbjct: 161 LAEILQ 166
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA G L +E L++ GAD N D G +PLHLAA G+ EI+ L++ G D+N +D FG
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 447 NTPLLEAIKYGNDGAASLLVK 467
T +I GN+ A +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 34/164 (20%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGR--SPLHLAASRGYEEIMTFLIQKGVDINLKDN 444
AA GD+ ++ L + N D +GR +PLH AA ++ +L+Q G D++ KD
Sbjct: 17 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 445 FGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPN 504
G PL A YG+ A LLVK GA +NV + F
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF------------------------ 111
Query: 505 TRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD 548
TPLH AA++G Y + KLL++ GA K+R GNTPLD
Sbjct: 112 -------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 148
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 31/138 (22%)
Query: 377 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 436
E + ++ AA + + +E L++ GAD + D G PLH A S G+ E+ L++ G
Sbjct: 41 EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 100
Query: 437 VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRV 496
+N+ D + TPL E A A+G ++ K +
Sbjct: 101 AVVNVADLWKFTPLHE-------------------------------AAAKGKYEICKLL 129
Query: 497 LSNGIDPNTRDYDLRTPL 514
L +G DP ++ D TPL
Sbjct: 130 LQHGADPTKKNRDGNTPL 147
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 492 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGR 551
+++ +L +G D + +D PLH A S G Y +A+LLV+ GA V D W TPL E
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 118
Query: 552 MCGNKNLIKLL 562
G + KLL
Sbjct: 119 AKGKYEICKLL 129
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLR--TPLHVAASEGLYLMAKLLVEAG 533
EA L A GD + +K+ L N RD + R TPLH AA + + L++ G
Sbjct: 9 EADRQLLEAAKAGDVETVKK-LCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 67
Query: 534 ASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
A V KD+ G PL G+ + +LL
Sbjct: 68 ADVHAKDKGGLVPLHNACSYGHYEVAELL 96
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 34/164 (20%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGR--SPLHLAASRGYEEIMTFLIQKGVDINLKDN 444
AA GD+ ++ L + N D +GR +PLH AA ++ +L+Q G D++ KD
Sbjct: 15 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 445 FGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPN 504
G PL A YG+ A LLVK GA +NV + F
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF------------------------ 109
Query: 505 TRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD 548
TPLH AA++G Y + KLL++ GA K+R GNTPLD
Sbjct: 110 -------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 31/138 (22%)
Query: 377 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 436
E + ++ AA + + +E L++ GAD + D G PLH A S G+ E+ L++ G
Sbjct: 39 EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98
Query: 437 VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRV 496
+N+ D + TPL E A A+G ++ K +
Sbjct: 99 AVVNVADLWKFTPLHE-------------------------------AAAKGKYEICKLL 127
Query: 497 LSNGIDPNTRDYDLRTPL 514
L +G DP ++ D TPL
Sbjct: 128 LQHGADPTKKNRDGNTPL 145
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 492 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGR 551
+++ +L +G D + +D PLH A S G Y +A+LLV+ GA V D W TPL E
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 552 MCGNKNLIKLL 562
G + KLL
Sbjct: 117 AKGKYEICKLL 127
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLR--TPLHVAASEGLYLMAKLLVEAG 533
EA L A GD + +K+ L N RD + R TPLH AA + + L++ G
Sbjct: 7 EADRQLLEAAKAGDVETVKK-LCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 534 ASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
A V KD+ G PL G+ + +LL
Sbjct: 66 ADVHAKDKGGLVPLHNACSYGHYEVAELL 94
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N D+ G +PLHL + G+ EI+ L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
D+N D G TPL A RG ++++ +L
Sbjct: 72 DVNASDKSGWTPLH-------------------------------LAAYRGHLEIVEVLL 100
Query: 498 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 557
G D N DY TPLH+AA +G + ++L++ GA V +D++G T D GN++
Sbjct: 101 KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 558 LIKLLE 563
L ++L+
Sbjct: 161 LAEILQ 166
Score = 72.0 bits (175), Expect = 9e-13, Method: Composition-based stats.
Identities = 37/81 (45%), Positives = 50/81 (61%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AAY G L +E L++ GAD N DY G +PLHLAA G+ EI+ L++ G D+N +D FG
Sbjct: 87 AAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 447 NTPLLEAIKYGNDGAASLLVK 467
T +I GN+ A +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 5/133 (3%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
G+K+L G++ ++R+ +D+ + L L VN+ G L +E L++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNN----GHLEIIEVLLKYA 70
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
AD N +D G +PLHLAA RG+ EI+ L++ G D+N D G TPL A + G+
Sbjct: 71 ADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVE 130
Query: 464 LLVKEGASLNVEE 476
+L+K GA +N ++
Sbjct: 131 VLLKYGADVNAQD 143
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 80.1 bits (196), Expect = 3e-15, Method: Composition-based stats.
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 33/187 (17%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N D G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEA-GSFLCTAVARGDSDLLKRV 496
D+N D G+TPL A K G+ +L+K GA +N ++ GS
Sbjct: 72 DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGS----------------- 114
Query: 497 LSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK 556
TPLH+AA G + ++L++ GA V +D++G T D GN+
Sbjct: 115 ---------------TPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 557 NLIKLLE 563
+L ++L+
Sbjct: 160 DLAEILQ 166
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
G+K+L G++ ++R+ +D+ + + L L AA G L +E L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHL----AARVGHLEIVEVLLKNG 70
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
AD N D+ G +PLHLAA RG+ EI+ L++ G D+N D G+TPL A G+
Sbjct: 71 ADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVE 130
Query: 464 LLVKEGASLNVEE 476
+L+K GA +N ++
Sbjct: 131 VLLKYGADVNAQD 143
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 4/175 (2%)
Query: 390 HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTP 449
H ++ +L L+ A+PN G +PLH+AA G+ E + L++K G TP
Sbjct: 92 HTNMVKL--LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP 149
Query: 450 LLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDPNTRD 507
L A KYG A LL++ A N L AV + D++K +L G P++
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209
Query: 508 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
++ TPLH+AA + +A+ L++ G S + G TPL G+ ++ LL
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 2/178 (1%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
A++ G L ++ L++ GA PN ++ +PLH+AA G+ E+ +L+Q +N K
Sbjct: 21 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDPN 504
TPL A + G+ LL++ A+ N+ L A G + + +L
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140
Query: 505 TRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
TPLHVAA G +A+LL+E A + G TPL N +++KLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 7/192 (3%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L++ G N G +PLHLAA G+ E++ L+ K + NL + G TPL + G+
Sbjct: 231 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 290
Query: 459 DGAASLLVKEGASLNVEEAGSFLCTAVAR--GDSDLLKRVLSNGIDPNTRDYDLRTPLHV 516
A +L+K G ++ + VA G+ L+K +L + D N + +PLH
Sbjct: 291 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 350
Query: 517 AASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG---NKNLIKLLEDAKSTQLLEF 573
AA +G + LL++ GAS G TPL + G +++K++ D S L+
Sbjct: 351 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 410
Query: 574 PH--GFQDTADK 583
H F +T D+
Sbjct: 411 KHRMSFPETVDE 422
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 8/181 (4%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
A +H +L ++ L+ G P+ ++G +PLH+AA + E+ L+Q G N + G
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNG--ID 502
TPL A + G+ +LL+ + A+ N+ L G + ++ +G +D
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 503 PNTR-DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKL 561
TR Y TPLHVA+ G + K L++ A V K + G +PL + G+ +++ L
Sbjct: 306 ATTRMGY---TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL 362
Query: 562 L 562
L
Sbjct: 363 L 363
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 415 SPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN- 473
+PLH+A+ G+ I+ L+Q+G N+ + TPL A + G+ A L++ A +N
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 474 -VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA 532
++ + L A G ++++K +L N +PN TPLH+AA EG L+E
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 533 GASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
AS + G TPL G + +LL
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 390 HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 432
H D+ L L++ GA PN DG +PL +A GY + L
Sbjct: 356 HTDIVTL--LLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 31/185 (16%)
Query: 379 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 438
+L K+ AA G ++ L+ GAD N TD +G +PLHLAA+ G EI+ L++ G D
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 439 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS 498
+N D+ G TPL A G+ +L+K GA +N + +
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW------------------ 106
Query: 499 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL 558
TPLH+AA G + ++L++ GA V +D G T D G ++L
Sbjct: 107 -------------TPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153
Query: 559 IKLLE 563
++L+
Sbjct: 154 AEILQ 158
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 7/151 (4%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
G+K+L G++ ++R+ +D+ L L AA +G L +E L++ G
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHL----AAANGQLEIVEVLLKNG 62
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
AD N +D G +PLHLAA G+ EI+ L++ G D+N D G TPL A G
Sbjct: 63 ADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVE 122
Query: 464 LLVKEGASLNVEEAGSFLC--TAVARGDSDL 492
+L+K GA +N ++A ++ +G DL
Sbjct: 123 VLLKHGADVNAQDALGLTAFDISINQGQEDL 153
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 475 EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 534
++ G L A A G D ++ +++NG D N D + TPLH+AA+ G + ++L++ GA
Sbjct: 4 QDLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 535 SVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
V D G TPL G+ ++++L
Sbjct: 64 DVNASDSAGITPLHLAAYDGHLEIVEVL 91
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 31/123 (25%)
Query: 412 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS 471
+GR+PLHLAA G+ E++ L++ G D+N KD G TPL A + G+ LL++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59
Query: 472 LNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 531
D N +D + RTPLH+AA G + KLL+E
Sbjct: 60 ------------------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 532 AGA 534
AGA
Sbjct: 90 AGA 92
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 53/84 (63%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA +G L ++ L+ AGAD N D +GR+PLHLAA G+ E++ L++ G D+N KD G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 447 NTPLLEAIKYGNDGAASLLVKEGA 470
TPL A + G+ LL++ GA
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGA 92
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 484 AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWG 543
A G +++K +L G D N +D + RTPLH+AA G + KLL+EAGA V KD+ G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 544 NTPLDEGRMCGNKNLIKLLEDA 565
TPL G+ ++KLL +A
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEA 90
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 511 RTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 565
RTPLH+AA G + KLL+EAGA V KD+ G TPL G+ ++KLL +A
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 55/96 (57%)
Query: 384 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 443
+++AA +G +++ L+ GAD N DG +PLHLAA G+ EI+ L+ KG D+N +
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 444 NFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS 479
GNTP A K G+ LL +GA +N GS
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 32/134 (23%)
Query: 412 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS 471
DG +PLH AA G+ E + L+ KG D+N + GNTPL A K G+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH------------- 54
Query: 472 LNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 531
++++K +L+ G D N R D TP H+A G + + KLL
Sbjct: 55 ------------------AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 532 AGASVFPKDRWGNT 545
GA V + WG++
Sbjct: 97 KGADVNARS-WGSS 109
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 481 LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD 540
L A G ++ +K++LS G D N R D TPLH+AA G + KLL+ GA V +
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 541 RWGNTPLDEGRMCGNKNLIKLLEDAKSTQL 570
+ GNTP + G+ ++KLL DAK +
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLL-DAKGADV 101
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 509 DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
D TPLH AA G K L+ GA V + + GNTPL G+ ++KLL
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 59/99 (59%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N D DG +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 476
D+N +DNFG TPL A G+ +L+K GA +N ++
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 404
G+K+L G++ ++R+ ++ + + ++ AA G L +E L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGA---DVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 405 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL 464
D N D G +PLHLAA RG+ EI+ L++ G D+N +D FG T +I GN+ A +
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 465 LVK 467
L K
Sbjct: 132 LQK 134
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 450 LLEAIKYGNDGAASLLVKEGASLNV--EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 507
LLEA + G D +L+ GA +N E+ + L A G ++++ +L G D N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 508 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
TPLH+AA G + ++L++ GA V +D++G T D GN++L ++L+
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 49/87 (56%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535
+ G L A G D ++ +++NG D N D D TPLH+AA G + ++L++ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 536 VFPKDRWGNTPLDEGRMCGNKNLIKLL 562
V +D +G TPL + G+ ++++L
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVL 99
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 450 LLEAIKYGNDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRD 507
LLEA + G D +L+ GA +N +++AG + L A RG ++++ +L +G D N RD
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 508 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
RTPLH+AA+ G + ++L+E GA V +D++G T D GN++L ++L+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
G+K+L G++ ++R+ +D+ L L AA G L +E L++ G
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL----AAKRGHLEIVEVLLKHG 70
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
AD N D GR+PLHLAA+ G+ EI+ L++ G D+N +D FG T +I GN+ A
Sbjct: 71 ADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 464 LLVK 467
+L K
Sbjct: 131 ILQK 134
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 57/99 (57%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ A G ++ L+ GAD N D G +PLHLAA RG+ EI+ L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 476
D+N +D +G TPL A G+ +L++ GA +N ++
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535
+ G L A G D ++ +++NG D N D TPLH+AA G + ++L++ GA
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 536 VFPKDRWGNTPLDEGRMCGNKNLIKLL 562
V +D WG TPL G+ ++++L
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
A +GDL +++ + G D NRT GR PLH AA G EI+ FL+ KG DIN D
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
TPLL A+ G+ LL+ +GA V+ G TA+ D+ +K +L
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVK--GPDGLTALEATDNQAIKALL 117
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 484 AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWG 543
A+ GD D +K ++ G D N R PLH AA G + + L+ GA + D+
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 544 NTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGF 577
TPL G+ + +KLL + + ++ P G
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL 102
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
A +GDL +++ + G D NRT GR PLH AA G EI+ FL+ KG DIN D
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 497
TPLL A+ G+ LL+ +GA V+ G TA D+ +K +L
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTVK--GPDGLTAFEATDNQAIKALL 122
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 484 AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWG 543
A+ GD D +K ++ G D N R PLH AA G + + L+ GA + D+
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 544 NTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGF 577
TPL G+ + +KLL + + ++ P G
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL 107
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 5/124 (4%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
G+K+L G++ ++R+ +D+ L L AA G L +E L++ G
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL----AAKRGHLEIVEVLLKHG 70
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
AD N +D GR+PLHLAA+ G+ EI+ L++ G D+N +D FG T +I GN+ A
Sbjct: 71 ADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 464 LLVK 467
+L K
Sbjct: 131 ILQK 134
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 450 LLEAIKYGNDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRD 507
LLEA + G D +L+ GA +N +++AG + L A RG ++++ +L +G D N D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 508 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
RTPLH+AA+ G + ++L+E GA V +D++G T D GN++L ++L+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 56/99 (56%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ A G ++ L+ GAD N D G +PLHLAA RG+ EI+ L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 476
D+N D +G TPL A G+ +L++ GA +N ++
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535
+ G L A G D ++ +++NG D N D TPLH+AA G + ++L++ GA
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 536 VFPKDRWGNTPLDEGRMCGNKNLIKLL 562
V D WG TPL G+ ++++L
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 5/124 (4%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
G+K+L G++ ++R+ +D+ L L AA G L +E L++ G
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL----AAKRGHLEIVEVLLKHG 70
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
AD N +D GR+PLHLAA+ G+ EI+ L++ G D+N +D FG T +I GN+ A
Sbjct: 71 ADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 464 LLVK 467
+L K
Sbjct: 131 ILQK 134
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 450 LLEAIKYGNDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRD 507
LLEA + G D +L+ GA +N +++AG + L A RG ++++ +L +G D N D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 508 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
RTPLH+AA+ G + ++L+E GA V +D++G T D GN++L ++L+
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 57/99 (57%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ A G ++ L+ GAD N D G +PLHLAA RG+ EI+ L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 476
D+N D++G TPL A G+ +L++ GA +N ++
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535
+ G L A G D ++ +++NG D N D TPLH+AA G + ++L++ GA
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 536 VFPKDRWGNTPLDEGRMCGNKNLIKLL 562
V D WG TPL G+ ++++L
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVL 99
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 5/124 (4%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
G+K+L G++ ++R+ +D+ + K L L AA + L +E L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHL----AADYDHLEIVEVLLKHG 70
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
AD N D DG +PLHLAA G+ EI+ L++ G D+N +D FG T +I GN+ A
Sbjct: 71 ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 464 LLVK 467
+L K
Sbjct: 131 ILQK 134
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 57/99 (57%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N D G +PLHLAA + EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 476
D+N DN G+TPL A +G+ +L+K GA +N ++
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQD 110
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 450 LLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 507
LLEA + G D +L+ GA +N + + L A ++++ +L +G D N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 508 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
D TPLH+AA G + ++L++ GA V +D++G T D GN++L ++L+
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535
+ G L A G D ++ +++NG D N D TPLH+AA + ++L++ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 536 VFPKDRWGNTPLDEGRMCGNKNLIKLL 562
V D G+TPL + G+ ++++L
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVL 99
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 88/178 (49%), Gaps = 5/178 (2%)
Query: 163 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 221
S + ++R+K+ + +Y+ +L +R++I+ + +Y + E + +++ SIR +
Sbjct: 5 SSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDV 64
Query: 222 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 281
+ + VP F G S F+ ++V L E F P + ++++G D+++F+ G ++
Sbjct: 65 ANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVD 124
Query: 282 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIID 339
I +G + L S FGE+ +L + +V+ C L + Q F ++D
Sbjct: 125 --IIMSDGV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLD 178
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL-------- 450
L+ GA+ N+ D +G PLH AAS GY +I +LI +G + ++ G+TPL
Sbjct: 92 LVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM 151
Query: 451 -----LEAIKYGNDGAASLLVKEGASL----------------NVEEAGSFLCTAVARGD 489
E + G D A+ +E L + + G+ L A A+G
Sbjct: 152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211
Query: 490 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDE 549
+++LK ++ D N +DYD TPLH AA G ++LVE + ++ G T D
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD- 270
Query: 550 GRMCGNKNLIKLLEDAKSTQLL 571
+++++ LE+ + Q L
Sbjct: 271 ---VADEDILGYLEELQKKQNL 289
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 87/206 (42%), Gaps = 29/206 (14%)
Query: 386 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 445
+A GD ++ L+ GAD N + DG + LH A +++ FL++ G +IN DN
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 446 GNTPLLEAIKYGNDGAASLLVKEGA---SLNVEEAGSFLCTAVARGDSDLLKRVLSNGID 502
G PL A G A L+ +GA ++N E + L V G+D
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165
Query: 503 -------------PNTRDY-------DLR------TPLHVAASEGLYLMAKLLVEAGASV 536
+ R + D+R T LHVAA++G + KLL++A V
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225
Query: 537 FPKDRWGNTPLDEGRMCGNKNLIKLL 562
KD G TPL G + ++L
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRIL 251
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 478 GSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF 537
G+ A + GD++ + R+L G D N + D T LH A + M K LVE GA++
Sbjct: 41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100
Query: 538 PKDRWGNTPLDEGRMCG 554
D G PL CG
Sbjct: 101 QPDNEGWIPLHAAASCG 117
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 450 LLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDPNTRD 507
L A G+ L++ GA +N L A + D++K ++ NG + N D
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 508 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD 548
+ PLH AAS G +A+ L+ GA V + G+TPLD
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 38/209 (18%)
Query: 369 ITFHISKHEA--ELALKVNSAAYH-----GDLYQLEGLIRAGADPNRTDYDGRSPLHLAA 421
+ ++ISK +L +NS H G L + L++ GADP+ D +G S +HLAA
Sbjct: 58 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 117
Query: 422 SRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFL 481
G+ I+ +LI KG D+++ D G TPL+ A
Sbjct: 118 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA---------------------------- 149
Query: 482 CTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD 540
A D + +L+ + N D Y T LH A G + LL+EAGA+V ++
Sbjct: 150 --AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN 207
Query: 541 RWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 569
G + LD + N +I L++A+ +
Sbjct: 208 IKGESALDLAKQRKNVWMINHLQEARQAK 236
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 51/89 (57%)
Query: 379 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 438
+L K+ AA G ++ L+ GAD N D DG +PLHLAA G+ EI+ L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 439 INLKDNFGNTPLLEAIKYGNDGAASLLVK 467
+N +D FG T +I GN+ A +L K
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535
+ G L A G D ++ +++NG D N +D D TPLH+AA EG + ++L++AGA
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 536 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 565
V +D++G T D GN++L ++L+ A
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 420 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 476
AA G ++ + L+ G D+N KD G TPL A + G+ +L+K GA +N ++
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 102/214 (47%), Gaps = 11/214 (5%)
Query: 163 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 221
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 3 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEI 62
Query: 222 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 281
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 63 INFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGV-- 120
Query: 282 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 341
V + G ++ + L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 121 -VSVLTKGNKE--TKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 177
Query: 342 FCDGRKVLTNLLQ-----GKESDLRLKQLQSDIT 370
R T L GK++ + L ++Q D+
Sbjct: 178 PMMRRAFETVALDRLDRIGKKNSILLHKVQHDLN 211
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
G+K+L G++ ++R+ +D+ +K E L + A HG L +E L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVN---AKDEYGLT-PLYLATAHGHLEIVEVLLKNG 70
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
AD N D G +PLHLAA G+ EI L++ G D+N +D FG T +I GN+ A
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAE 130
Query: 464 LLVK 467
+L K
Sbjct: 131 ILQK 134
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 450 LLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDPNTRD 507
LLEA + G D +L+ GA +N ++ L A A G ++++ +L NG D N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 508 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
TPLH+AA G +A++L++ GA V +D++G T D GN++L ++L+
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N D G +PL+LA + G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDL 492
D+N D G TPL A G+ A +L+K GA +N ++ + ++ G+ DL
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535
+ G L A G D ++ +++NG D N +D TPL++A + G + ++L++ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 536 VFPKDRWGNTPLDEGRMCGNKNLIKLL 562
V D G TPL G+ + ++L
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVL 99
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 345 GRKVLTNLLQGKESDLR-LKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
G+K+L G++ ++R L +D+ + L L AA G L +E L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHL----AAMLGHLEIVEVLLKNG 70
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
AD N T GR+PLHLAA + EI+ L++ G D+N +D FG T +I GN+ A
Sbjct: 71 ADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 464 LLVK 467
+L K
Sbjct: 131 ILQK 134
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 54/99 (54%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L GAD N DY G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 476
D+N N G TPL A + +L+K GA +N ++
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 450 LLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 507
LLEA + G D +L GA +N + + L A G ++++ +L NG D N
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 508 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
RTPLH+AA + ++L++ GA V +D++G T D GN++L ++L+
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535
+ G L A G D ++ + +NG D N DY TPLH+AA G + ++L++ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 536 VFPKDRWGNTPL 547
V G TPL
Sbjct: 73 VNATGNTGRTPL 84
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 163 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 221
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R KI
Sbjct: 6 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKI 65
Query: 222 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 281
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 66 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 123
Query: 282 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 341
V + G ++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 124 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 163 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 221
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 9 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEI 68
Query: 222 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 281
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 69 INFNXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGV-- 126
Query: 282 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 341
V + G ++ + L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 127 -VSVLTKGNKE--TKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 2/182 (1%)
Query: 384 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 443
++ AA HG L LI G N D SPLH A G+ + L++ G +N
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 444 NFGNTPLLEAIKYGNDGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGID 502
+TPL A G+ +LL++ GAS+ E + S + A RG + + +++ G +
Sbjct: 67 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 126
Query: 503 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
+ + L TPL++A K L+E+GA V + + ++PL ++ L LL
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLL 185
Query: 563 ED 564
D
Sbjct: 186 MD 187
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 415 SPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN- 473
SP+H AA G++ + LI +G +N+ +PL EA G+ +L+K GA +N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 474 -VEEAGSFLCTAVARGDSDLLKRVLSNG--IDPNTRDYDLRTPLHVAASEGLYLMAKLLV 530
+ + L A G D + +L +G + P + DL +P+H AA G L+
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES---DLASPIHEAARRGHVECVNSLI 121
Query: 531 EAGASVFPKDRWGNTPL-----DEGRMCGNKNL 558
G ++ K TPL ++ R C K L
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQQRACVKKLL 154
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 377 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 436
E++LA ++ AA G + + LI G + + +PL+LA + L++ G
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 437 VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEA 477
D+N + ++PL + ++ A LL+ GA + A
Sbjct: 158 ADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNA 197
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL 450
L+ +GAD N+ SPLH A EE+ L+ G D K+ G P+
Sbjct: 153 LLESGADVNQGKGQ-DSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPV 203
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 54/99 (54%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD N D G +PLHLAA + EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 476
D+N D G TPL YG+ +L+K GA +N ++
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQD 110
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 345 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALK-VNSAAYHGDLYQLEGLIRA 402
G+K+L G++ ++R+ +D+ E ++ L ++ AA + L +E L++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVN-----AEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
Query: 403 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAA 462
GAD N D G +PLHL A G+ EI+ L++ G D+N +D FG T +I GN+ A
Sbjct: 70 GADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 463 SLLVK 467
+L K
Sbjct: 130 EILQK 134
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 450 LLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDPNTRD 507
LLEA + G D +L+ GA +N E+ L A ++++ +L NG D N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 508 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
TPLH+ A G + ++L++ GA V +D++G T D GN++L ++L+
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535
+ G L A G D ++ +++NG D N D TPLH+AA + ++L++ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 536 VFPKDRWGNTPLDEGRMCGNKNLIKLL 562
V D G TPL M G+ ++++L
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVL 99
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 163 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 221
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 4 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 63
Query: 222 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 281
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 64 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 121
Query: 282 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 341
V + G ++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 122 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 178
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 92/187 (49%), Gaps = 8/187 (4%)
Query: 158 LIVKGSKTEK--FRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIP 214
L+ +GS + + +++K + +Y++ ++L D R +I + +Y+ + E S+L ++
Sbjct: 1 LVPRGSDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELN 60
Query: 215 ISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYF 274
+R +I + +PLF F+ ++ +L E F PG+ I+ +G + ++YF
Sbjct: 61 GPLREEIVNFNNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYF 120
Query: 275 VCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 334
+ G V + G ++ L S FGE+S+L + +V+ RL + +F
Sbjct: 121 IQHGV---VSVLTKGNKEMK--LSDGSYFGEISLLTRGRRTASVRADTYSRLYSLSVDNF 175
Query: 335 TNIIDIY 341
+++ Y
Sbjct: 176 NEVLEEY 182
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 163 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 221
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 6 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 65
Query: 222 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 281
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 66 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 123
Query: 282 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 341
V + G ++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 124 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 17/169 (10%)
Query: 396 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 455
+E L+R GADP +G +P LAA G +++ + KG D+N D +G T +EA
Sbjct: 55 VELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114
Query: 456 YGNDGAASLLVKEGASLNVEE------------AGSFLCTAVARGDSDLLKRVLSN-GID 502
YG A L K GA++N+ + L A +G ++LK +L G D
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174
Query: 503 PNTRDYDLRTPL-HVAAS---EGLYLMAKLLVEAGASVFPKDRWGNTPL 547
N D R L H S + + LL++ GA V + G TPL
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLNV-EEAGSF--LCTAVARGDSDLLKRVLSNGIDP 503
N L++A++ + L++ GA++N EE G + L AV D+++ +L +G DP
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65
Query: 504 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
R + TP +AA G + KL + GA V D +G T E + G +K L
Sbjct: 66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDINLKDNFGNTPLLEAIKYG 457
L+ GAD N G++PL LA + + ++ L+ Q+ ++IN D+ G T LL A++
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264
Query: 458 NDGAASLLVKEGAS 471
A LL K GAS
Sbjct: 265 LKKIAELLCKRGAS 278
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 36/139 (25%)
Query: 403 GADPNRTDYDGRSPL-HLAASRG---YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
GAD N D GR+ L H S E I L+ G D+N++ G TPL+ A++ +
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231
Query: 459 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSN-GIDPNTRDYDLRTPLHVA 517
G L++R+L I+ N D D +T L +A
Sbjct: 232 LG-------------------------------LVQRLLEQEHIEINDTDSDGKTALLLA 260
Query: 518 ASEGLYLMAKLLVEAGASV 536
L +A+LL + GAS
Sbjct: 261 VELKLKKIAELLCKRGAST 279
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 163 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 221
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 6 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 65
Query: 222 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 281
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 66 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 123
Query: 282 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 341
V + G ++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 124 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 163 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 221
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 9 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 68
Query: 222 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 281
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 69 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 126
Query: 282 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 341
V + G ++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 127 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 163 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 221
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 3 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEI 62
Query: 222 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 281
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 63 INFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGV-- 120
Query: 282 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 341
V + G ++ + L S FGE+ +L + V+ CRL + +F +++ Y
Sbjct: 121 -VSVLTKGNKE--TKLADGSYFGEICLLTRGRRTARVRADTYCRLYSLSVDNFNEVLEEY 177
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 17/169 (10%)
Query: 396 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 455
+E L+R GADP +G +P LAA G +++ + KG D+N D +G T +EA
Sbjct: 75 VELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 134
Query: 456 YGNDGAASLLVKEGASLNVEE------------AGSFLCTAVARGDSDLLKRVLSN-GID 502
YG A L K GA++N+ + L A +G ++LK +L G D
Sbjct: 135 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 194
Query: 503 PNTRDYDLRTPL-HVAAS---EGLYLMAKLLVEAGASVFPKDRWGNTPL 547
N D R L H S + + LL++ GA V + G TPL
Sbjct: 195 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 243
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDINLKDNFGNTPLLEAIKYG 457
L+ GAD N G++PL LA + + ++ L+ Q+ ++IN D+ G T LL A++
Sbjct: 225 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 284
Query: 458 NDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNG 500
A LL K GAS + G + TA D L+K +LS+G
Sbjct: 285 LKKIAELLCKRGASTDC---GDLVMTARRNYDHSLVKVLLSHG 324
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLNV-EEAGSF--LCTAVARGDSDLLKRVLSNGIDP 503
N L++A++ + L++ GA++N EE G + L AV D+++ +L +G DP
Sbjct: 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 85
Query: 504 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
R + TP +AA G + KL + GA V D +G T E + G +K L
Sbjct: 86 VLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 144
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
A+ A+ ++ A G ++ L+ + A PN+ D G +PL A S G+ E++ L+Q G
Sbjct: 117 ADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA 176
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV 474
IN +N GNT L EA+ + LL+ GAS+ V
Sbjct: 177 SINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV 213
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA HG + L++ GA+ + D PLHLA +G+ +++ L+ N KD G
Sbjct: 93 AALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSG 152
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLNV 474
NTPL+ A G+ +LL++ GAS+N
Sbjct: 153 NTPLIYACSGGHHELVALLLQHGASINA 180
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 436 GVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLL 493
G+ +N+ G++PL A +G LL+K GA+ A L A +G ++
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 494 KRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEG 550
K +L + PN +D TPL A S G + + LL++ GAS+ + GNT L E
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEA 192
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%)
Query: 469 GASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKL 528
G ++ ++ S L A G +DL+ +L +G + R+ D PLH+A +G + + K
Sbjct: 78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKC 137
Query: 529 LVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
L+++ A KD GNTPL G+ L+ LL
Sbjct: 138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 493 LKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRM 552
L +V ++G+ N D +PLHVAA G + LL++ GA+ ++ PL
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ 128
Query: 553 CGNKNLIKLLEDAKS 567
G+ ++K L D+ +
Sbjct: 129 QGHFQVVKCLLDSNA 143
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 465 LVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYL 524
LV G+ + + G L A G D ++ +++NG D +D + TPLH+AA G
Sbjct: 13 LVPRGSHMG-SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE 71
Query: 525 MAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
+ KLL+EAGA V +D++G T D GN++L ++L+
Sbjct: 72 VVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD D +G +PLHLAA G+ E++ L++ G
Sbjct: 22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLL 465
D+ +D FG T +I GN+ A +L
Sbjct: 82 DVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 420 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 476
AA G ++ + L+ G D+ KD G+TPL A + G+ LL++ GA + ++
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 509 DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 565
DL L AA G ++L+ GA V KD+ G+TPL G+ ++KLL +A
Sbjct: 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 437
++L K+ AA G ++ L+ GAD D +G +PLHLAA G+ E++ L++ G
Sbjct: 4 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLL 465
D+N +D FG T +I GN+ A +L
Sbjct: 64 DVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535
+ G L A G D ++ +++NG D +D + TPLH+AA G + KLL+EAGA
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 536 VFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
V +D++G T D GN++L ++L+
Sbjct: 65 VNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 420 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 476
AA G ++ + L+ G D+ KD G+TPL A + G+ LL++ GA +N ++
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 509 DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 565
DL L AA G ++L+ GA V KD+ G+TPL G+ ++KLL +A
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYG 457
L+ A AD N D GR+PLH A S + + LI+ + D++ + + G TPL+ A +
Sbjct: 44 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103
Query: 458 NDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH 515
+G L+ A +N V++ G S L A A + D +L NG + + ++ TPL
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163
Query: 516 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED---AKSTQL 570
+AA EG Y AK+L++ A+ D P D + + ++++LL++ +S QL
Sbjct: 164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 396 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 455
LE LI + AD N D G+S LH AA+ + L++ G + ++++N TPL A +
Sbjct: 108 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 167
Query: 456 YGNDGAASLLVKEGASLNVEE 476
G+ A +L+ A+ ++ +
Sbjct: 168 EGSYETAKVLLDHFANRDITD 188
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 428 IMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE-AGSFLCTAVA 486
I F+ Q N D G T L A +Y AA L++ A N+++ G A
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66
Query: 487 RGDSDLLKRVL--SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGN 544
D+ + ++L + D + R +D TPL +AA + M + L+ + A V D G
Sbjct: 67 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 126
Query: 545 TPL 547
+ L
Sbjct: 127 SAL 129
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 504 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
N D T LH+AA AK L+EA A +D G TPL + + ++L
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 564 DAKSTQL 570
++T L
Sbjct: 79 RNRATDL 85
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYG 457
L+ A AD D GR+PLH A S + + L++ + D++ + + G TPL+ A +
Sbjct: 41 LLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLA 100
Query: 458 NDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH 515
+G L+ A +N V++ G S L A A + D +L NG + + ++ TPL
Sbjct: 101 LEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLF 160
Query: 516 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 564
+AA EG Y AK+L++ A+ D P D + + ++++LL++
Sbjct: 161 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 396 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 455
LE LI + AD N D G+S LH AA+ + L++ G + ++++N TPL A +
Sbjct: 105 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 164
Query: 456 YGNDGAASLLVKEGASLNVEE 476
G+ A +L+ A+ ++ +
Sbjct: 165 EGSYETAKVLLDHFANRDITD 185
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 504 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
N D T LH+AA AK L+EA A +D G TPL + + ++L
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 564 DAKSTQL 570
++T L
Sbjct: 76 RNRATDL 82
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 407 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLV 466
N D R+PL +A G E + L++ + KD G+T L+ A+K G A L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 467 KEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYL 524
+G+++N ++ + L ++ G S++ +L +G + N R+ + TPL VA+ G
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 525 MAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK 566
+ K L+E GA + +D G T R+ G + +IK+ + +
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 397 EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKY 456
E L+ G++ N D+ G++PL + GY E+ FL++ G ++N ++ G TPL+ A KY
Sbjct: 85 EKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY 144
Query: 457 GNDGAASLLVKEGASLNVEEAGSFLCTAVAR 487
G L++ GA ++ + A AR
Sbjct: 145 GRSEIVKKLLELGADISARDLTGLTAEASAR 175
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 420 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS 479
AA+RG E +T L+Q V++N ++ FG T L + +K GN A L+ GA+ ++++
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 480 F--LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-V 536
F + A G D L+ +L N D N D + PLH+AA EG + + LV+ AS V
Sbjct: 71 FAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 537 FPKDRWGNTPLDEGRMCGNKNLIKLLE 563
++ G+T D R+ G ++ L++
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L+ GA+P+ D G + +H AA G+ + + L++ D+N++DN GN PL A K G+
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGH 115
Query: 459 DGAASLLVKEGAS 471
LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 384 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLK 442
++ AA G L L+ L+ AD N D +G PLHLAA G+ ++ FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 443 DNFGNTPLLEAIKYGNDGAASLLVKEGA 470
++ G+T A YG + SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA HG + +E L++ GADP S L LA S+GY +I+ L+ GVD+N D G
Sbjct: 41 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 100
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLNVE 475
TPLL A+ + +L++ GA +E
Sbjct: 101 GTPLLYAVHGNHVKCVKMLLESGADPTIE 129
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 31/183 (16%)
Query: 381 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 440
+L V+ A G++ L I N TD +G +PL AA+ G ++ FL+Q G D
Sbjct: 2 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 61
Query: 441 LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNG 500
L + G + A SL A ++G +D++K +L G
Sbjct: 62 L------------LGKGRESALSL-------------------ACSKGYTDIVKMLLDCG 90
Query: 501 IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK 560
+D N D++ TPL A K+L+E+GA + G +D G +++ +
Sbjct: 91 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ 150
Query: 561 LLE 563
++E
Sbjct: 151 VIE 153
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%)
Query: 475 EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 534
EE + L A A G +++ +L NG DP + L +A S+G + K+L++ G
Sbjct: 32 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 91
Query: 535 SVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGF 577
V D G TPL + +K+L ++ + +E G+
Sbjct: 92 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 134
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYG 457
L+ A AD N D GR+PLH A S + + LI+ + D++ + + G TPL+ A +
Sbjct: 77 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 136
Query: 458 NDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH 515
+G L+ A +N V++ G S L A A + D +L NG + + ++ TPL
Sbjct: 137 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 196
Query: 516 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED---AKSTQL 570
+AA EG Y AK+L++ A+ D P D + + ++++LL++ +S QL
Sbjct: 197 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 254
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 403 GADPNRTDYDGRSPLHLAASRG-------YEE-------IMTFLIQKGVDINLKDNFGNT 448
G D N DG +PL +A+ G EE I F+ Q N D G T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 449 PLLEAIKYGNDGAASLLVKEGASLNVEE-AGSFLCTAVARGDSDLLKRVL--SNGIDPNT 505
L A +Y AA L++ A N+++ G A D+ + ++L + D +
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 506 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL 547
R +D TPL +AA + M + L+ + A V D G + L
Sbjct: 121 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 162
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 396 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 455
LE LI + AD N D G+S LH AA+ + L++ G + ++++N TPL A +
Sbjct: 141 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 200
Query: 456 YGNDGAASLLVKEGASLNVEE 476
G+ A +L+ A+ ++ +
Sbjct: 201 EGSYETAKVLLDHFANRDITD 221
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 436 GVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKR 495
G+D+N++ G TPL+ A G ++ G S E+A + + + +G S
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGG------LETGNSEEEEDAPAVISDFIYQGAS----- 49
Query: 496 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 555
L N D T LH+AA AK L+EA A +D G TPL
Sbjct: 50 -LHNQTDRTGE-----TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 103
Query: 556 KNLIKLLEDAKSTQL 570
+ + ++L ++T L
Sbjct: 104 QGVFQILIRNRATDL 118
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA HG + +E L++ GADP S L LA S+GY +I+ L+ GVD+N D G
Sbjct: 59 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 118
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLNVE 475
TPLL A+ + +L++ GA +E
Sbjct: 119 GTPLLYAVHGNHVKCVKMLLESGADPTIE 147
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 31/183 (16%)
Query: 381 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 440
+L V+ A G++ L I N TD +G +PL AA+ G ++ FL+Q G D
Sbjct: 20 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 79
Query: 441 LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNG 500
L + G + A SL A ++G +D++K +L G
Sbjct: 80 L------------LGKGRESALSL-------------------ACSKGYTDIVKMLLDCG 108
Query: 501 IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK 560
+D N D++ TPL A K+L+E+GA + G +D G +++ +
Sbjct: 109 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ 168
Query: 561 LLE 563
++E
Sbjct: 169 VIE 171
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%)
Query: 475 EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 534
EE + L A A G +++ +L NG DP + L +A S+G + K+L++ G
Sbjct: 50 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 109
Query: 535 SVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGF 577
V D G TPL + +K+L ++ + +E G+
Sbjct: 110 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 152
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 387 AAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 445
AA +G E L+RAG + RT D R+PLH+AAS G+ I+ L++ G D+N KD
Sbjct: 41 AAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIVEVLLKHGADVNAKDML 99
Query: 446 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTA----VARGDSDL 492
T L A ++ + LL+K GA +V F TA + G+ DL
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGA--DVHTQSKFCKTAFDISIDNGNEDL 148
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 379 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 438
+L K+ AA G ++ L+ GA P TD+ G SPLHLAA G+ L++ GV
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 439 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS 498
+ + TPL A G+ +L+K GA +N + D+LK
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK---------------DMLK---- 100
Query: 499 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL 558
T LH A + +LL++ GA V + ++ T D GN++L
Sbjct: 101 ------------MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Query: 559 IKLLE 563
++L+
Sbjct: 149 AEILQ 153
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 163 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 221
S ++++K + +Y++ ++L D+R +I + +Y+ + E ++L ++ +R +I
Sbjct: 9 SSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQGKIFDEENILSELNDPLREEI 68
Query: 222 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 281
+ +PLF F+ ++ +L E F PG+ I+ +G V ++YF+ G
Sbjct: 69 VNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGV-- 126
Query: 282 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 341
G+ +++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 127 -AGVITKSSKEMK--LTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA HG + +E L++ GADP S L LA S+GY +I+ L+ GVD+N D G
Sbjct: 43 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLNVE 475
TPLL A+ + +L++ GA +E
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIE 131
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 31/183 (16%)
Query: 381 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 440
+L V+ A G++ L I N TD +G +PL AA+ G ++ FL+Q G D
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 441 LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNG 500
L + G + A SL A ++G +D++K +L G
Sbjct: 64 L------------LGKGRESALSL-------------------ACSKGYTDIVKMLLDCG 92
Query: 501 IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK 560
+D N D++ TPL A K+L+E+GA + G +D G +++ +
Sbjct: 93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ 152
Query: 561 LLE 563
++E
Sbjct: 153 VIE 155
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%)
Query: 475 EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 534
EE + L A A G +++ +L NG DP + L +A S+G + K+L++ G
Sbjct: 34 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 93
Query: 535 SVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGF 577
V D G TPL + +K+L ++ + +E G+
Sbjct: 94 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 136
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYG 457
L+ A AD N D GR+PLH A S + + LI+ + D++ + + G TPL+ A +
Sbjct: 76 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135
Query: 458 NDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH 515
+G L+ A +N V++ G S L A A + D +L NG + + ++ TPL
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 516 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
+AA EG Y AK+L++ A+ D P D + + ++++LL+
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 412 DGRSPLHLAASRG-------YEE-------IMTFLIQKGVDINLKDNFGNTPLLEAIKYG 457
DG +PL +A+ G EE I F+ Q N D G T L A +Y
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68
Query: 458 NDGAASLLVKEGASLNVEE-AGSFLCTAVARGDSDLLKRVL--SNGIDPNTRDYDLRTPL 514
AA L++ A N+++ G A D+ + ++L + D + R +D TPL
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Query: 515 HVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL 547
+AA + M + L+ + A V D G + L
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 396 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 455
LE LI + AD N D G+S LH AA+ + L++ G + ++++N TPL A +
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Query: 456 YGNDGAASLLVKEGASLNVEE 476
G+ A +L+ A+ ++ +
Sbjct: 200 EGSYETAKVLLDHFANRDITD 220
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 437 VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRV 496
+D+N++ G TPL+ A G ++ G S E+A + + + +G S
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGG------LETGNSEEEEDAPAVISDFIYQGAS------ 48
Query: 497 LSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK 556
L N D T LH+AA AK L+EA A +D G TPL +
Sbjct: 49 LHNQTDRTGE-----TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 103
Query: 557 NLIKLLEDAKSTQL 570
+ ++L ++T L
Sbjct: 104 GVFQILIRNRATDL 117
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 420 AASRG-YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG 478
AA+RG +E+ L ++ V + + FG T L + + +G+ A L+K+GAS NV++A
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 75
Query: 479 --SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 536
S + A G D LK ++ +G D N D P+H+A EG + L + +
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 134
Query: 537 FPKDRWGNTPLDEGRMCGNKNLIKLLE 563
+D G TPL+ R G +NL+ +L+
Sbjct: 135 HHRDASGLTPLELARQRGAQNLMDILQ 161
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L++ GA PN D G SP+H AA G+ + + L++ G D+N D+ G+ P+ AI+ G+
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 459 DGAASLLVKEGASLNVEEAG-SFLCTAVARGDSDLL 493
S L E + + +G + L A RG +L+
Sbjct: 122 SSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLM 157
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 384 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 443
V+ AA G L L+ L+ GAD N D G P+HLA G+ +++FL + D++ +D
Sbjct: 80 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES-DLHHRD 138
Query: 444 NFGNTPLLEAIKYGNDGAASLL 465
G TPL A + G +L
Sbjct: 139 ASGLTPLELARQRGAQNLMDIL 160
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 374 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 433
+ H E L + A+ GD+ +E L++ G+DPN D+ G +PLH A + G+ +++ L+
Sbjct: 6 TNHRGETLLHI--ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 434 QKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN 473
Q +N ++PL +A K G+ LL+ GAS N
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 32/166 (19%)
Query: 403 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAA 462
G DP T++ G + LH+A+ +G + +L+Q G D N+KD+ G TPL EA +G+
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 463 SLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGL 522
LL++ A +N T Y +PLH AA G
Sbjct: 60 ELLLQHKALVN-------------------------------TTGYQNDSPLHDAAKNGH 88
Query: 523 YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 568
+ KLL+ GAS + +G P+D K+L+ L E +S+
Sbjct: 89 VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 384 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 443
++ A HG L +E L++ A N T Y SPLH AA G+ +I+ L+ G N +
Sbjct: 47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 444 NFGNTPL 450
FG P+
Sbjct: 107 IFGLRPV 113
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 420 AASRG-YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG 478
AA+RG +E+ L ++ V + + FG T L + + +G+ A L+K+GAS NV++A
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 73
Query: 479 --SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 536
S + A G D LK ++ +G D N D P+H+A EG + L + +
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 132
Query: 537 FPKDRWGNTPLDEGRMCGNKNLIKLLE 563
+D G TPL+ R G +NL+ +L+
Sbjct: 133 HHRDASGLTPLELARQRGAQNLMDILQ 159
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L++ GA PN D G SP+H AA G+ + + L++ G D+N D+ G+ P+ AI+ G+
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 459 DGAASLLVKEGASLNVEEAG-SFLCTAVARGDSDLL 493
S L E + + +G + L A RG +L+
Sbjct: 120 SSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLM 155
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 384 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 443
V+ AA G L L+ L+ GAD N D G P+HLA G+ +++FL + D++ +D
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES-DLHHRD 136
Query: 444 NFGNTPLLEAIKYGNDGAASLL 465
G TPL A + G +L
Sbjct: 137 ASGLTPLELARQRGAQNLMDIL 158
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYG 457
L+ A AD N D GR+PLH A S + + LI+ + D++ + + G TPL+ A +
Sbjct: 76 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135
Query: 458 NDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH 515
+G L+ A +N V++ G S L A A + D +L NG + + ++ TPL
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 516 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563
+AA EG Y AK+L++ A+ D P D + + ++++LL+
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 396 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 455
LE LI + AD N D G+S LH AA+ + L++ G + ++++N TPL A +
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Query: 456 YGNDGAASLLVKEGASLNVEE 476
G+ A +L+ A+ ++ +
Sbjct: 200 EGSYETAKVLLDHFANRDITD 220
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 437 VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRV 496
+D+N++ G TPL+ A G ++ G S E+A + + + +G S
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGG------LETGNSEEEEDAPAVISDFIYQGAS------ 48
Query: 497 LSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK 556
L N D T LH+AA+ AK L+EA A +D G TPL +
Sbjct: 49 LHNQTDRTGA-----TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 103
Query: 557 NLIKLLEDAKSTQL 570
+ ++L ++T L
Sbjct: 104 GVFQILIRNRATDL 117
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L++ GA PN D G SP+H AA G+ + + L++ G D+N+ D G P+ A++ G+
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 459 DGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDP 503
S L E + L+ +A L A+ RG DL+ + + + P
Sbjct: 120 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 5/147 (3%)
Query: 420 AASRG-YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG 478
AA+RG +E+ L ++ V + + FG T L + + +G+ A L+K+GAS NV++
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 73
Query: 479 --SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 536
S + A G D LK ++ +G D N D P+H+A EG + L A + +
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL 132
Query: 537 FPKDRWGNTPLDEGRMCGNKNLIKLLE 563
+D G TPL+ G ++L+ +L+
Sbjct: 133 HRRDARGLTPLELALQRGAQDLVDILQ 159
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 384 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 443
V+ AA G L L+ L+ GAD N D G P+HLA G+ +++FL + D++ +D
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRD 136
Query: 444 NFGNTPLLEAIKYGNDGAASLL 465
G TPL A++ G +L
Sbjct: 137 ARGLTPLELALQRGAQDLVDIL 158
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 6/180 (3%)
Query: 163 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 221
S ++++K + +Y + ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 6 SSRRQYQEKYKQVEQYXSFHKLPADFRQKIHDYYEHRYQGKXFDEDSILGELNGPLREEI 65
Query: 222 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 281
+ PLF F+ + +L E F PG+ I+ +G + + YF+ G
Sbjct: 66 VNFNCRKLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGV-- 123
Query: 282 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 341
V + G ++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 124 -VSVLTKGNKE--XKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L++ GA PN D G SP+H AA G+ + + L++ G D+N+ D G P+ A++ G+
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 459 DGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLL 493
S L E + L+ +A L A+ RG DL+
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLV 149
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 5/147 (3%)
Query: 420 AASRG-YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG 478
AA+RG +E+ L ++ V + + FG T L + + +G+ A L+K+GAS NV++
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 67
Query: 479 --SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 536
S + A G D LK ++ +G D N D P+H+A EG + L A + +
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL 126
Query: 537 FPKDRWGNTPLDEGRMCGNKNLIKLLE 563
+D G TPL+ G ++L+ +L+
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 384 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 443
V+ AA G L L+ L+ GAD N D G P+HLA G+ +++FL + D++ +D
Sbjct: 72 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRD 130
Query: 444 NFGNTPLLEAIKYGNDGAASLL 465
G TPL A++ G +L
Sbjct: 131 ARGLTPLELALQRGAQDLVDIL 152
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 412 DGR--SPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEG 469
DGR +PLHLAA I+ L+Q G D++ KD G PL A YG+ LL+K G
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Query: 470 ASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDP 503
A +N + F L A ++ ++ +LS+G DP
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 7/165 (4%)
Query: 351 NLLQG-KESDLRL--KQLQSDITFHISKHEAELALKVNSAAYHGDLYQL-EGLIRAGADP 406
+LLQ +E+DL K L +I E AL A+ H Q+ E L+R GA+
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240
Query: 407 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLV 466
N + D +PLH+AA R + ++M L + G +N D+ G T L A G+ LL+
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300
Query: 467 KEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLR 511
G+ ++ F TA G+ + ++++LS T D D R
Sbjct: 301 SYGSDPSIISLQGF--TAAQMGN-EAVQQILSESTPMRTSDVDYR 342
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 79/223 (35%), Gaps = 59/223 (26%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L++ GAD + D G PLH A S G+ E+ L++ G +N D + TPL EA
Sbjct: 77 LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136
Query: 459 DGAASLLVKEGAS-----------------------LNVEEAGSFLCTAVARGDSDLLKR 495
SLL+ GA L E G L A D +K+
Sbjct: 137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK 196
Query: 496 VLS------------------------------------NGIDPNTRDYDLRTPLHVAAS 519
L+ G + N ++ D TPLHVAA
Sbjct: 197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256
Query: 520 EGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
+ ++L + GA + D G T L + G+ +LL
Sbjct: 257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 39/163 (23%)
Query: 404 ADPNRT-----DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
ADP+ +Y L A S E++M L V+ + D +TPL A Y
Sbjct: 11 ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR 70
Query: 459 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAA 518
LL++ GA ++ ++ G + PLH A
Sbjct: 71 VRIVQLLLQHGADVHAKDKGGLV-------------------------------PLHNAC 99
Query: 519 SEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKL 561
S G Y + +LL++ GA V D W TPL E +KN +++
Sbjct: 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEA---ASKNRVEV 139
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 361 RLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLA 420
++K++ D T+ + + + E +N A ++ D+ + LI GAD N + SP A
Sbjct: 20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 421 ASRGYEEIMTFLIQKGV-DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS 479
++G EI+ ++++ D+N + +G L+ A + G+ LL+++G +++
Sbjct: 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-DIDFQND 138
Query: 480 FLCTA------VARGD---SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV 530
F TA + G+ D++K ++ NG D + +D RT + A +G ++K+L
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Query: 531 E 531
+
Sbjct: 199 Q 199
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 407 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLV 466
+ D +G +PL++A EI LI +G DINL+++ ++P L A G + ++
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92
Query: 467 KEGA-SLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPL-------HV 516
K LN G+ L A +G D +K +L +G D D + V
Sbjct: 93 KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG----REDIDFQNDFGYTALIEAV 148
Query: 517 AASEGLYL---MAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
EG L + KLL+E GA KD G T +D G + K+L
Sbjct: 149 GLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 420 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS 479
AA+RG E +T L+Q V++N ++ FG T L + +K GN A L+ GA+ ++++
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 480 F--LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-V 536
F + A G D L+ +L D N D + PLH+AA EG + + LV+ AS V
Sbjct: 71 FAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 537 FPKDRWGNTPLDEGRMCGNKNLIKLLE 563
++ G+T D R+ G ++ L++
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 384 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLK 442
++ AA G L L+ L+ AD N D +G PLHLAA G+ ++ FL++ ++ +
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 443 DNFGNTPLLEAIKYGNDGAASLLVKEGA 470
++ G+T A YG + SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L+ GA+P+ D G + +H AA G + + L++ D+N++DN GN PL A K G+
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 459 DGAASLLVKEGAS 471
LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 1/154 (0%)
Query: 384 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 443
++ AA HG L LI G N D SPLH A G+ + L++ G +N
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 444 NFGNTPLLEAIKYGNDGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGID 502
+TPL A G+ +LL++ GAS+ E + S + A RG + + +++ G +
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182
Query: 503 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 536
+ + L TPL++A K L+E+GA V
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADV 216
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 415 SPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV 474
SP+H AA G++ + LI +G +N+ +PL EA G+ +L+K GA +N
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 475 EEAG--SFLCTAVARGDSDLLKRVLSNG--IDPNTRDYDLRTPLHVAASEGLYLMAKLLV 530
A + L A G D + +L +G + P + DL +P+H AA G L+
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES---DLASPIHEAARRGHVECVNSLI 177
Query: 531 EAGASVFPKDRWGNTPL-----DEGRMCGNKNLIKLLEDA 565
G ++ K TPL ++ R C + KLLE
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRAC----VKKLLESG 213
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 377 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 436
E++LA ++ AA G + + LI G + + +PL+LA + L++ G
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 437 VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEA 477
D+N + ++PL ++ ++ A LL+ GA + A
Sbjct: 214 ADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNA 253
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L+ +GAD N+ SPLH EE+ L+ G D K+ G P +E + +
Sbjct: 209 LLESGADVNQGKGQ-DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP-VELVPPES 266
Query: 459 DGAASLLVKEGASL 472
A L +EGASL
Sbjct: 267 PLAQLFLEREGASL 280
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 410 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NFGNTPLLEAIKYGNDGAASLLVKE 468
+YDG + LH+A + +E + L+++G DI+ D G +PL+ A++ + LL++
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172
Query: 469 GASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASE 520
GA++N + S L +A RG L++ ++ +G D + ++ TPL VA S
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 11/166 (6%)
Query: 408 RTDYDGRSPLHLAASRG----YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 463
R D DG +PLH+A +G ++ Q G ++++ +N TPL A+
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 464 LLVKEGAS-LNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT-----RDYDLRTPLHVA 517
LLV GAS + ++ G S R L + P T R+YD T LHVA
Sbjct: 64 LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123
Query: 518 ASEGLYLMAKLLVEAGASVFPKD-RWGNTPLDEGRMCGNKNLIKLL 562
+ +LL+E GA + D + G +PL + ++++LL
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
A + L ++ L++ GA+ N Y G S LH A+ RG ++ L++ G D +LK+
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216
Query: 447 NTPLLEA 453
+TPL+ A
Sbjct: 217 DTPLMVA 223
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 399 LIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 457
L+ GAD + D GRSPL A ++ L+Q G ++N + G++ L A G
Sbjct: 135 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 194
Query: 458 NDGAASLLVKEGA 470
LV+ GA
Sbjct: 195 LLPLVRTLVRSGA 207
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 420 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS 479
AA+RG E +T L+Q V++N ++ FG T L + +K GN A L+ GA+ ++++
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 480 F--LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-V 536
F + A G D L+ +L D N D + PLH+AA EG + + LV+ AS V
Sbjct: 71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 537 FPKDRWGNTPLDEGRMCGNKNLIKLLE 563
++ G+T D R+ G ++ L++
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L+ GA+P+ D G + +H AA G+ + + L++ D+N++DN GN PL A K G+
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 459 DGAASLLVKEGAS 471
LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 384 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLK 442
++ AA G L L+ L+ AD N D +G PLHLAA G+ ++ FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 443 DNFGNTPLLEAIKYGNDGAASLLVKEGA 470
++ G+T A YG + SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 420 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS 479
AA+RG E +T L+Q V++N ++ FG T L + +K GN A L+ GA+ ++++
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 480 F--LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-V 536
F + A G D L+ +L D N D + PLH+AA EG + + LV+ AS V
Sbjct: 71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 537 FPKDRWGNTPLDEGRMCGNKNLIKLLE 563
++ G+T D R+ G ++ L++
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L+ GA+P+ D G + +H AA G+ + + L++ D+N++DN GN PL A K G+
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 459 DGAASLLVKEGAS 471
LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 384 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLK 442
++ AA G L L+ L+ AD N D +G PLHLAA G+ ++ FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 443 DNFGNTPLLEAIKYGNDGAASLLVKEGA 470
++ G+T A YG + SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 3/169 (1%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYG 457
L+ AGAD N D GR+PLH A + + L++ + ++N + + G TPL+ A +
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 458 NDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH 515
+G L+ A +N + + L A A +++ + +L + + + +D TPL
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 516 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 564
+AA EG Y +K L++ A+ D P D + ++++LL++
Sbjct: 190 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 64/165 (38%), Gaps = 31/165 (18%)
Query: 399 LIRAGADPNRT-DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 457
L+ GA+ N T D G + LHLAA + L+ G D N +DN G TPL A+
Sbjct: 36 LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAAD 95
Query: 458 NDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVA 517
G +L++ A+ + N R +D TPL +A
Sbjct: 96 AMGVFQILLRNRAT------------------------------NLNARMHDGTTPLILA 125
Query: 518 ASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
A + M + L+ A A + D G T L N + +L
Sbjct: 126 ARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNIL 170
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 396 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 455
+E LI A AD N D G++ LH AA+ E + L+ + + +D+ TPL A +
Sbjct: 134 VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAR 193
Query: 456 YG 457
G
Sbjct: 194 EG 195
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 420 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE-AG 478
AA+RG E +T L+Q V++N ++ FG T L + +K GN A L+ GA+ ++++ G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 479 SFLCTAVAR-GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-V 536
+ + AR G D L+ +L D N D + PLH+AA EG + + LV+ AS V
Sbjct: 71 NAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 537 FPKDRWGNTPLDEGRMCGNKNLIKLLE 563
++ G+T D R+ G ++ L++
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458
L+ GA+P+ D G + +H AA G+ + + L++ D+N++DN GN PL A K G+
Sbjct: 56 LLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 459 DGAASLLVKEGAS 471
LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 384 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLK 442
++ AA G L L+ L+ AD N D +G PLHLAA G+ ++ FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 443 DNFGNTPLLEAIKYGNDGAASLLVKEGA 470
++ G+T A YG + SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%)
Query: 396 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 455
+E LI GA N + +PLHLAAS G+ +I+ L+Q DIN + GN PL A
Sbjct: 50 VEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF 109
Query: 456 YGNDGAASLLVKEGASLNV 474
+G D A LV GA +++
Sbjct: 110 WGQDQVAEDLVANGALVSI 128
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG--SFLCTAVARGDSDLLKR 495
D+N D+ G +PL A + G +L+ GA +NV G + L A + G D++++
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 496 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGR 551
+L D N + PLH A G +A+ LV GA V +++G P+D+ +
Sbjct: 86 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA HG ++ L++ AD N + G PLH A G +++ L+ G +++ + +G
Sbjct: 74 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Query: 447 NTPLLEA 453
P+ +A
Sbjct: 134 EMPVDKA 140
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 512 TPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
+PLH A EG + ++L+ GA + +R +TPL G++++++ L
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 86
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
A G +E LI GA N + +PLHLAAS G+ +I+ L+Q DIN + G
Sbjct: 46 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLNV 474
N PL A +G D A LV GA +++
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANGALVSI 133
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 438 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG--SFLCTAVARGDSDLLKR 495
D+N D+ G +PL A + G +L+ GA +NV G + L A + G D++++
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 496 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGR 551
+L D N + PLH A G +A+ LV GA V +++G P+D+ +
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 344 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 403
+GR + +L + + + + D H+ AA HG ++ L++
Sbjct: 49 EGRSAVVEMLIMRGARINVMNRGDDTPLHL-------------AASHGHRDIVQKLLQYK 95
Query: 404 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEA 453
AD N + G PLH A G +++ L+ G +++ + +G P+ +A
Sbjct: 96 ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 512 TPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562
+PLH A EG + ++L+ GA + +R +TPL G++++++ L
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
A+ G++ + L+ GADP+ + S L LA++ GY +I+ L+++ VDIN+ D G
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARG 488
TPLL A++ + L+ GA L E + + AVA G
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 417 LHLAASRGYEEIMTFLIQKGVD-INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV- 474
+H A++G + + ++KG + +N D G TPL+ A +G L++ GA ++
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 475 -EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 533
+E S L A G +D++ +L +D N D++ TPL A + L+ G
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 534 ASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 564
A + + G TP+D G + + +++E+
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 408 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL---KDNFGNTPLLEAIKYGNDGAASL 464
+ D DGR PLH + S EI +FL+ K ++NL D+ G TP A GN
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 465 L----VKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASE 520
L +K + + + L AV + ++ + ++ NG +D + PLH AAS
Sbjct: 91 LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 521 GLYLMAKLLVEAGAS-VFPKDRWGNTPL 547
G + +LL G S V +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 405 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL 464
D N+ G + LHLA + + E+ FLI+ G + +KD F PL A G+ L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 465 LVKEGAS-LNVEEAGSF--LCTAVARGDSD 491
L G S +N ++ + L A+A G D
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD-INLKDNFGNTPLLEAIKYG 457
LI GA D + PLH AAS G +++ L G +N +D G TPL A+ G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 458 NDGAASLLVKE 468
+ AA LLV++
Sbjct: 186 HGDAAVLLVEK 196
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 408 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL---KDNFGNTPLLEAIKYGNDGAASL 464
+ D DGR PLH + S EI +FL+ K ++NL D+ G TP A GN
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 465 L----VKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASE 520
L +K + + + L AV + ++ + ++ NG +D + PLH AAS
Sbjct: 91 LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 521 GLYLMAKLLVEAGAS-VFPKDRWGNTPL 547
G + +LL G S V +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 405 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL 464
D N+ G + LHLA + + E+ FLI+ G + +KD F PL A G+ L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 465 LVKEGAS-LNVEEAGSF--LCTAVARGDSD 491
L G S +N ++ + L A+A G D
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD-INLKDNFGNTPLLEAIKYG 457
LI GA D + PLH AAS G +++ L G +N +D G TPL A+ G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 458 NDGAASLLVKE 468
+ AA LLV++
Sbjct: 186 HGDAAVLLVEK 196
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 408 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL---KDNFGNTPLLEAIKYGNDGAASL 464
+ D DGR PLH + S EI +FL+ K ++NL D+ G TP A GN
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 465 L----VKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASE 520
L +K + + + L AV + ++ + ++ NG +D + PLH AAS
Sbjct: 91 LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 521 GLYLMAKLLVEAGAS-VFPKDRWGNTPL 547
G + +LL G S V +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 405 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL 464
D N+ G + LHLA + + E+ FLI+ G + +KD F PL A G+ L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 465 LVKEGAS-LNVEEAGSF--LCTAVARGDSD 491
L G S +N ++ + L A+A G D
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 399 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD-INLKDNFGNTPLLEAIKYG 457
LI GA D + PLH AAS G +++ L G +N +D G TPL A+ G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 458 NDGAASLLVKE 468
+ AA LLV++
Sbjct: 186 HGDAAVLLVEK 196
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
A+ G++ + L+ GADP+ + S L LA++ GY +I+ L+++ VDIN+ D G
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARG 488
TPLL A+ + L+ GA L E + + AVA G
Sbjct: 103 GTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 417 LHLAASRGYEEIMTFLIQKGVD-INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV- 474
+H A++G + + ++KG + +N D G TPL+ A +G L++ GA ++
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 475 -EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 533
+E S L A G +D++ +L +D N D++ TPL A + L+ G
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Query: 534 ASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 564
A + + G TP+D G + + +++E+
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 351 NLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD 410
+L GK ++LR K I + LAL ++S+ G+ ++ +I DP+ +
Sbjct: 10 SLPPGKRTNLR-KTGSERIAHGMRVKFNPLALLLDSS-LEGEFDLVQRIIYEVDDPSLPN 67
Query: 411 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGA 470
+G + LH A G+ EI+ FL+Q GV++N D+ G TPL A N LV+ GA
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 471 SL 472
++
Sbjct: 128 AV 129
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 471 SLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV 530
SL +E + L AV G ++++K ++ G++ N D D TPLH AAS + K LV
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 531 EAGASVF 537
E+GA+VF
Sbjct: 124 ESGAAVF 130
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 16/165 (9%)
Query: 479 SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 538
+ L + G+ DL++R++ DP+ + + T LH A G + K LV+ G +V
Sbjct: 39 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Query: 539 KDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTR----KCTVFP 594
D G TPL C N + K L ++ + Q ADK +C+ F
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Query: 595 FHPWDAKESRRHGIV--LWI--PQNIKDLIKTAAEQLDFRGGDCI 635
+ + G++ LW PQN ++L + GDC+
Sbjct: 159 YGVQEKMGIMNKGVIYALWDYEPQN--------DDELPMKEGDCM 195
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 351 NLLQGKESDLRLKQLQSDITFH---ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPN 407
+L GK ++LR + S+ H + + LAL ++S+ G+ ++ +I DP+
Sbjct: 8 SLPPGKRTNLR--KTGSERIAHGMRVKFNPLPLALLLDSS-LEGEFDLVQRIIYEVDDPS 64
Query: 408 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVK 467
+ +G + LH A G+ EI+ FL+Q GV++N D+ G TPL A N LV+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Query: 468 EGASL 472
GA++
Sbjct: 125 SGAAV 129
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 471 SLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV 530
SL +E + L AV G ++++K ++ G++ N D D TPLH AAS + K LV
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 531 EAGASVF 537
E+GA+VF
Sbjct: 124 ESGAAVF 130
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 16/165 (9%)
Query: 479 SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 538
+ L + G+ DL++R++ DP+ + + T LH A G + K LV+ G +V
Sbjct: 39 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Query: 539 KDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTR----KCTVFP 594
D G TPL C N + K L ++ + Q ADK +C+ F
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Query: 595 FHPWDAKESRRHGIV--LWI--PQNIKDLIKTAAEQLDFRGGDCI 635
+ + G++ LW PQN ++L + GDC+
Sbjct: 159 YGVQEKMGIMNKGVIYALWDYEPQN--------DDELPMKEGDCM 195
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 397 EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-----NF-GNTPL 450
E L+ AG DP D+ G +PLHLA +G + L Q +L N+ G+T L
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 451 LEAIKYGNDGAASLLVKEGASLNVEE---AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 507
A +G G LLV GA +N +E + L AV + DL+ +L G D N
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 181
Query: 508 YDLRTP 513
Y +P
Sbjct: 182 YQGYSP 187
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 414 RSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS-- 471
++PLHLA EI L+ G D L+D GNTPL A + G + +L + +
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 472 ----LNVEEAGSFLCTAVA--RGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYL 524
L C +A G +++ ++S G D N ++ + RT LH+A
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 525 MAKLLVEAGASVFPKDRWGNTP 546
+ LL++ GA V G +P
Sbjct: 166 LVSLLLKCGADVNRVTYQGYSP 187
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 397 EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-----NF-GNTPL 450
E L+ AG DP D+ G +PLHLA +G + L Q +L N+ G+T L
Sbjct: 59 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 118
Query: 451 LEAIKYGNDGAASLLVKEGASLNVEE---AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 507
A +G G LLV GA +N +E + L AV + DL+ +L G D N
Sbjct: 119 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 178
Query: 508 YDLRTPLHV 516
Y +P +
Sbjct: 179 YQGYSPYQL 187
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 414 RSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS-- 471
++PLHLA EI L+ G D L+D GNTPL A + G + +L + +
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 472 ----LNVEEAGSFLCTAVA--RGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYL 524
L C +A G +++ ++S G D N ++ + RT LH+A
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Query: 525 MAKLLVEAGASVFPKDRWGNTP 546
+ LL++ GA V G +P
Sbjct: 163 LVSLLLKCGADVNRVTYQGYSP 184
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 163 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE--SSYTEASVLQDIPISIRAK 220
S+ + + DL +I +RL + + +++ + + + + +L+D P +RA
Sbjct: 9 SRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRAD 68
Query: 221 ISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKL 280
I+ L ++ +PLF+ S + + + + F PGE ++ +G+ + +YFVC G +
Sbjct: 69 IAMHLNKELLQ-LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSM 127
Query: 281 E 281
E
Sbjct: 128 E 128
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 31/149 (20%)
Query: 417 LHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 476
L AA+RG E + L++ G D N + FG P+ + + G+ A LL+ GA N
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPN--- 71
Query: 477 AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 536
C DP T L P+H AA EG +L AGA +
Sbjct: 72 -----CA------------------DPAT----LTRPVHDAAREGFLDTLVVLHRAGARL 104
Query: 537 FPKDRWGNTPLDEGRMCGNKNLIKLLEDA 565
D WG P+D G++++ + L A
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAA 133
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 386 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 445
+AA G + + L+ AGADPN + GR P+ + G ++ L+ G + N D
Sbjct: 18 TAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPA 76
Query: 446 GNT-PLLEAIKYGNDGAASLLVKEGASLNVEEA 477
T P+ +A + G +L + GA L+V +A
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 31/149 (20%)
Query: 417 LHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 476
L AA+RG E + L++ G + N +++G P+ + + G+ A LL+ GA N
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPN--- 71
Query: 477 AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 536
C DP T L P+H AA EG +L AGA +
Sbjct: 72 -----CA------------------DPAT----LTRPVHDAAREGFLDTLVVLHRAGARL 104
Query: 537 FPKDRWGNTPLDEGRMCGNKNLIKLLEDA 565
+D WG P+D G++++ + L A
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAA 133
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 386 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 445
+AA G + ++ L+ AGA+PN + GR P+ + G + L+ G + N D
Sbjct: 18 TAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA 76
Query: 446 GNT-PLLEAIKYGNDGAASLLVKEGASLNVEEA 477
T P+ +A + G +L + GA L+V +A
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA 109
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 393 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE 452
L E L++ GA+ N+ D GR PLH A G+ + +++G D+ +D+ G PL
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Query: 453 AIKYGNDGAASLL 465
A++ N +LL
Sbjct: 308 AMETANADIVTLL 320
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 369 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI 428
+ F S H L ++ A+ D+ + G D +PL A +
Sbjct: 202 LLFRASGHPPSLPTMADALAHGADVNWVNG-----------GQDNATPLIQATAANSLLA 250
Query: 429 MTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEA 477
FL+Q G ++N D+ G PL A G+ G A L +K GA L ++
Sbjct: 251 CEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 496 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 555
+L NG + N D R PLH A G +A L ++ GA + +D G PL N
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 556 KNLIKLLEDAK 566
+++ LL AK
Sbjct: 314 ADIVTLLRLAK 324
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 393 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE 452
L E L++ GA+ N+ D GR PLH A G+ + +++G D+ +D+ G PL
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Query: 453 AIKYGNDGAASLL 465
A++ N +LL
Sbjct: 308 AMETANADIVTLL 320
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 369 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI 428
+ F S H L ++ A+ D+ + G D +PL A +
Sbjct: 202 LLFRASGHPPSLPTMADALAHGADVNWVNG-----------GQDNATPLIQATAANSLLA 250
Query: 429 MTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEA 477
FL+Q G ++N D+ G PL A G+ G A L +K GA L ++
Sbjct: 251 CEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 496 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 555
+L NG + N D R PLH A G +A L ++ GA + +D G PL N
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 556 KNLIKLLEDAK 566
+++ LL AK
Sbjct: 314 ADIVTLLRLAK 324
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 393 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE 452
L E L++ GA+ N+ D GR PLH A G+ + +++G D+ +D+ G PL
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Query: 453 AIKYGNDGAASLL 465
A++ N +LL
Sbjct: 308 AMETANADIVTLL 320
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 369 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI 428
+ F S H L ++ A+ D+ + G D +PL A +
Sbjct: 202 LLFRASGHPPSLPTMADALAHGADVNWVNG-----------GQDNATPLIQATAANSLLA 250
Query: 429 MTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEA 477
FL+Q G ++N D+ G PL A G+ G A L +K GA L ++
Sbjct: 251 CEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 496 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 555
+L NG + N D R PLH A G +A L ++ GA + +D G PL N
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 556 KNLIKLLEDAK 566
+++ LL AK
Sbjct: 314 ADIVTLLRLAK 324
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 31/149 (20%)
Query: 417 LHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 476
L AA+RG E + L++ G N +++G P+ + + G+ A LL+ GA N
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPN--- 71
Query: 477 AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 536
C DP T L P+H AA EG +L AGA +
Sbjct: 72 -----CA------------------DPAT----LTRPVHDAAREGFLDTLVVLHRAGARL 104
Query: 537 FPKDRWGNTPLDEGRMCGNKNLIKLLEDA 565
+D WG P+D G++++ + L A
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAA 133
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 386 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 445
+AA G + ++ L+ AGA PN + GR P+ + G + L+ G + N D
Sbjct: 18 TAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA 76
Query: 446 GNT-PLLEAIKYGNDGAASLLVKEGASLNVEEA 477
T P+ +A + G +L + GA L+V +A
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA 109
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNF 445
A HG + ++ L+ AD N D DG + L A G++EI L+ DI+L D
Sbjct: 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD 249
Query: 446 GNTPLLEAIKYGNDGAASLL 465
G+T L+ A+ G AS+L
Sbjct: 250 GSTALMVALDAGQSEIASML 269
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 392 DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLL 451
D+ + L R G + G++ L LA S G +++ L+ D+N++D+ G+T L+
Sbjct: 162 DIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALM 221
Query: 452 EAIKYGNDGAASLLVKEGA---SLNVEEAGSFLCTAVARGDSDL 492
A ++G+ A LL+ + SL + + L A+ G S++
Sbjct: 222 CACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEI 265
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 223 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKL-- 280
+ ++ +IE VPLFK +IV + E+ + GE I+ +G D Y + G++
Sbjct: 155 RKMFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSI 214
Query: 281 ---EEVGIEENG--TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFT 335
+ +NG E +++ H FGE++++ N P+ + + L +D Q+F
Sbjct: 215 LIRSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPRAASAYGVGDVKCLVMDVQAFE 274
Query: 336 NII 338
++
Sbjct: 275 RLL 277
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 235 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 294
LFK E ++Q++ + E+ E ++++G+ D Y + G + + ++N T
Sbjct: 45 LFKNLDQEQLSQVLDAMFEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSVG 104
Query: 295 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 354
Y + SFGE++++ N P+ T+ L +D+ +F II RK+ + ++
Sbjct: 105 QYDN-RGSFGELALMYNTPRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIE 163
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 399 LIRAGADPNRTDYDGRSPLH-LAASRGYEEIMTFLIQKGV--DINLKDNFGNTPL-LEAI 454
L +AGADP + RS LH AA+R + + L + DI D G T L + A
Sbjct: 185 LXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAH 244
Query: 455 KYGNDGAAS--LLVKEGASLNVEEAG----------SFLCTAVARGDSDLLKRVL-SNGI 501
G D AS LLV++GA ++ + A + L A + ++K ++ G
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGS 304
Query: 502 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKL 561
+ + +D D +TP+ +AA EG + L++ GASV D +T + + N++ +
Sbjct: 305 NKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 364
Query: 562 LE 563
+
Sbjct: 365 FD 366
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ + +F+G +N ++ + F G I ++G D+LY + GK++ +G
Sbjct: 28 LSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDG 87
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQ-VC 321
E+ ++ + P+ FGE+SI P P T VC
Sbjct: 88 RENLLTIMGPSDMFGELSIFD--PGPRTSSAVC 118
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ + +F+G I + +L F G + +G D+LY + GK++ +G
Sbjct: 6 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 65
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
E+ ++ + P+ FGE+SI P+ + R + +D+ + + I
Sbjct: 66 RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 114
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 235 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 294
LFK E ++Q++ + E+ GE ++++G+ D Y + G + + ++ +G V
Sbjct: 45 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 103
Query: 295 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
SFGE++++ N P+ T+ L +D+ +F II
Sbjct: 104 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 147
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ + +F+G I + +L F G + +G D+LY + GK++ +G
Sbjct: 8 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 67
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
E+ ++ + P+ FGE+SI P+ + R + +D+ + + I
Sbjct: 68 RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 116
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 235 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 294
LFK E ++Q++ + E+ GE ++++G+ D Y + G + + ++ +G V
Sbjct: 51 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 109
Query: 295 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
SFGE++++ N P+ T+ L +D+ +F II
Sbjct: 110 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 153
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ + +F+G I + +L F G + +G D+LY + GK++ +G
Sbjct: 5 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 64
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
E+ ++ + P+ FGE+SI P+ + R + +D+ + + I
Sbjct: 65 RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 113
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ + +F+G I + +L F G + +G D+LY + GK++ +G
Sbjct: 30 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 89
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
E+ ++ + P+ FGE+SI P+ + R + +D+ + + I
Sbjct: 90 RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 138
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 246 QIVIRLHEEFFLP-GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY------VSYLH 298
++VI EE +P G I+++G+ D Y V E GT D+ V+
Sbjct: 24 RLVINCLEEKSVPKGATIIKQGDQGDYFYVV-----------EKGTVDFYVNDNKVNSSG 72
Query: 299 PNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
P SSFGE++++ N P+ TV C L +D+ +F I+
Sbjct: 73 PGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKIL 112
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 21/155 (13%)
Query: 414 RSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASL 472
SPL LAA + ++ L++ +G +++ + G T L A Y N AA +L++ L
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 473 NVE-------EAGSFLCTAVARGDSDLLKRVLSNGID-------------PNTRDYDLRT 512
E E + L AV + +L++ +L+ G P+ Y
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 513 PLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL 547
PL AA G + +LL+E GA + +D GNT L
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 406 PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL 450
P+ Y G PL AA G EEI+ LI+ G DI +D+ GNT L
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 235 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 294
LFK E ++Q++ + E+ GE ++++G+ D Y + G + + ++ +G V
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 210
Query: 295 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 354
SFGE++++ N P+ T+ L +D+ +F II RK+ + ++
Sbjct: 211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE 270
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 223 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE- 281
+ +Y +IE +P K ++V + + + GE I+ +G++ D + V G+++
Sbjct: 262 RKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKI 321
Query: 282 ------EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFT 335
+ +EENG + ++ FGE++++ N P+ + + L +D Q+F
Sbjct: 322 TMKRKGKSEVEENGAVE-IARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFE 380
Query: 336 NII 338
++
Sbjct: 381 RLL 383
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 235 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 294
LFK E ++Q++ + E+ GE ++++G+ D Y + G + + ++ +G V
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 210
Query: 295 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 354
SFGE++++ N P+ T+ L +D+ +F II RK+ + ++
Sbjct: 211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE 270
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 223 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE- 281
+ +Y +IE +P K ++V + + + GE I+ +G++ D + V G+++
Sbjct: 262 RKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKI 321
Query: 282 ------EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFT 335
+ +EENG + ++ FGE++++ N P+ + + L +D Q+F
Sbjct: 322 TMKRKGKSEVEENGAVE-IARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFE 380
Query: 336 NII 338
++
Sbjct: 381 RLL 383
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 235 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 294
LFK E ++Q++ + E+ GE ++++G+ D Y + G + + ++ +G V
Sbjct: 41 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 99
Query: 295 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
SFGE++++ N P+ T+ L +D+ +F II
Sbjct: 100 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 143
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 223 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE- 281
+ +Y +IE +P K ++V + + + GE I+ +G+ D + V G++
Sbjct: 151 RKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRI 210
Query: 282 ------EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFT 335
+ IEENG + L FGE++++ N P+ + + L +D Q+F
Sbjct: 211 TMKRKGKSDIEENGAVEIARCLR-GQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFE 269
Query: 336 NII 338
++
Sbjct: 270 RLL 272
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 49/109 (44%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ + +F+G I + +L F G + +G D+LY + GK++ +G
Sbjct: 30 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 89
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
E+ ++ P+ FGE+SI P+ + R + +D+ + + I
Sbjct: 90 RENLLTIXGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 138
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 26/192 (13%)
Query: 408 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVK 467
++D + +H+AA +G + + LI+ GV +++ FG T L A K+G A L
Sbjct: 15 KSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74
Query: 468 EGASLNVEEAGSFLCTAVARGDSDLLKRVLS---------------------NGIDPNTR 506
G ++ + AV +DL+ ++ N I + +
Sbjct: 75 VGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVK 134
Query: 507 DYDLRTPLHVAASEGLYLMA--KLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 564
+T LH G + K+LV+ GAS KD+ TPL N+ + L D
Sbjct: 135 HCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXD 194
Query: 565 ---AKSTQLLEF 573
+KS+ L++
Sbjct: 195 TVPSKSSLRLDY 206
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 413 GRSPLHLAASRG--YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL---LVK 467
G++ LH G Y E + L+Q G KD TPL A ++ N A L V
Sbjct: 138 GQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVP 197
Query: 468 EGASLNVE----EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY 523
+SL ++ + S L A+ D+ R + GID N D + PL+++
Sbjct: 198 SKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXV 257
Query: 524 LMAKLLVE 531
L+ K L++
Sbjct: 258 LLTKELLQ 265
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 408 RTDY---DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL 464
R DY G S LH A +E++ ++ G+D+N +DN PL +++ A L
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVR----AAXVL 258
Query: 465 LVKE 468
L KE
Sbjct: 259 LTKE 262
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 446
AA G+L ++ ++ DP++ + +G + LH A I+ FLI G ++N D+ G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 447 NTPLLEAIKYGNDGAASLLVKEGASL 472
TPL A + LV+ GA++
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAI 113
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 475 EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 534
EE + L A+ + ++ +++ G + N+ D TPLH AAS ++ LV+ GA
Sbjct: 52 EEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
Query: 535 SVF 537
++F
Sbjct: 112 AIF 114
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 480 FLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPK 539
L A G+ +++++ + DP+ + + T LH A Y + L+ AGA+V
Sbjct: 24 LLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83
Query: 540 DRWGNTPLDEGRMCGN 555
D G TPL C +
Sbjct: 84 DSHGWTPLHCAASCND 99
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
IEK LF + I + F+ GE ++++G+ D Y + G+++ E
Sbjct: 40 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-- 97
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
+ + + SFGE++++ P+ TV+ +L ID+ S+ I+
Sbjct: 98 ---WATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 143
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 432 LIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN-VEEAG-SFLCTAVARGD 489
L + D++ + + G TPL+ A + +G L+ A +N V++ G S L A A +
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 490 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDE 549
D +L NG + + ++ TPL +AA EG Y AK+L++ A+ D P D
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 550 GRMCGNKNLIKLLED 564
+ + ++++LL++
Sbjct: 121 AQERMHHDIVRLLDE 135
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 396 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 455
LE LI + AD N D G+S LH AA+ + L++ G + ++++N TPL A +
Sbjct: 31 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 90
Query: 456 YGNDGAASLLVKEGASLNVEE 476
G+ A +L+ A+ ++ +
Sbjct: 91 EGSYETAKVLLDHFANRDITD 111
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
IEK LF + I + F+ GE ++++G+ D Y + G+++ E
Sbjct: 47 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-- 104
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
+ + + SFGE++++ P+ TV+ +L ID+ S+ I+
Sbjct: 105 ---WATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 150
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 257 LPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPY 316
+ GE ++++GN D Y V G EV + NG ++V+ + SFGE++++ P+
Sbjct: 159 IAGETVIQQGNEGDNFYVVDQG---EVDVYVNG--EWVTNISEGGSFGELALIYGTPRAA 213
Query: 317 TVQVCELCRLLRIDKQSFTNII 338
TV+ +L ID+ S+ I+
Sbjct: 214 TVKAKTDLKLWGIDRDSYRRIL 235
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 445
A H D + L AGAD N+ + GR+PLHLA ++ L++ G D +
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224
Query: 446 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFL 481
G TPL A+ N A LL GA E+ G L
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKL 259
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 32/126 (25%)
Query: 410 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NFGNTPLLEAIKYGNDGAASLLVKE 468
+YDG +PLH+A E++ L G D+N + G TPL A++ LL+K
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 469 GASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKL 528
GA DP R Y RTPL A ++A+L
Sbjct: 215 GA-------------------------------DPTARMYGGRTPLGSALLRPNPILARL 243
Query: 529 LVEAGA 534
L GA
Sbjct: 244 LRAHGA 249
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 413 GRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASL 472
G++ LHLAA G + L G + + + G+T L A + A +L++ S
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 473 NVEEAGSFL-----CT-----AVARGDSDLLKRVLSNGIDPNTRD---------YDLRTP 513
+ + ++L CT A A DS + N +P D YD TP
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDS---QPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 514 LHVAASEGLYLMAKLLVEAGASVF-PKDRWGNTPL 547
LHVA M +LL +AGA + P+ G TPL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 481 LCTAVARGDSDLLKRVLSNGIDPNTRDYDL-RTPLHVAASEGLYLMAKLLVEAGASVFPK 539
L AV D+++++ + G D N + RTPLH+A + +LL++AGA +
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 540 DRWGNTPLDEGRMCGNKNLIKLL 562
G TPL + N L +LL
Sbjct: 222 MYGGRTPLGSALLRPNPILARLL 244
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 387 AAYHGDLYQLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 445
A H D + L AGAD N+ + GR+PLHLA ++ L++ G D +
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224
Query: 446 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFL 481
G TPL A+ N A LL GA E+ G L
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKL 259
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 32/126 (25%)
Query: 410 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NFGNTPLLEAIKYGNDGAASLLVKE 468
+YDG +PLH+A E++ L G D+N + G TPL A++ LL+K
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 469 GASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKL 528
GA DP R Y RTPL A ++A+L
Sbjct: 215 GA-------------------------------DPTARMYGGRTPLGSALLRPNPILARL 243
Query: 529 LVEAGA 534
L GA
Sbjct: 244 LRAHGA 249
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 413 GRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASL 472
G++ LHLAA G + L G + + + G+T L A + A +L++ S
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 473 NVEEAGSFL-----CT-----AVARGDSDLLKRVLSNGIDPNTRD---------YDLRTP 513
+ + ++L CT A A DS + N +P D YD TP
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDS---QPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 514 LHVAASEGLYLMAKLLVEAGASVF-PKDRWGNTPL 547
LHVA M +LL +AGA + P+ G TPL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 481 LCTAVARGDSDLLKRVLSNGIDPNTRDYDL-RTPLHVAASEGLYLMAKLLVEAGASVFPK 539
L AV D+++++ + G D N + RTPLH+A + +LL++AGA +
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 540 DRWGNTPLDEGRMCGNKNLIKLL 562
G TPL + N L +LL
Sbjct: 222 MYGGRTPLGSALLRPNPILARLL 244
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 230 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 287
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 334
E L P + FGE++++ P+ TV LL + F
Sbjct: 288 VE-----LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADF 327
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 203 SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVI 262
S+ VLQ P +RA I L ++ P F+ S + + + PG++I
Sbjct: 2 SHMTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLI 61
Query: 263 MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 306
G VD L FV G LE + +E V+ L FG+V
Sbjct: 62 YHAGESVDSLCFVVSGSLEVIQDDE-----VVAILGKGDVFGDV 100
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 47/105 (44%)
Query: 234 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY 293
PLF G + E ++ + + G+ I +G++ LY V GK+ G E
Sbjct: 5 PLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT 64
Query: 294 VSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
++ L P FGE+S+L + + E LL + ++ + +I
Sbjct: 65 LALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALI 109
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
IEK LF + I + F+ GE ++++G+ D Y + G+++ V +
Sbjct: 41 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD-VYV---- 95
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
++ + + SFGE++++ P+ TV+ +L ID+ S+ I+
Sbjct: 96 NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 144
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
IEK LF + I + F+ GE ++++G+ D Y + G+++ V +
Sbjct: 37 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD-VYV---- 91
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
++ + + SFGE++++ P+ TV+ +L ID+ S+ I+
Sbjct: 92 NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 140
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
IEK LF + I + F+ GE ++++G+ D Y + G+++ V +
Sbjct: 39 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD-VYV---- 93
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
++ + + SFGE++++ P+ TV+ +L ID+ S+ I+
Sbjct: 94 NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 142
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
++ V F+ + QI + + E G + +G++ Y V G L+ E +
Sbjct: 44 LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSS 103
Query: 290 TEDYVSY--LHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 347
+D V+ L ++FGE SIL N P+ T+ E LLRI+++ F + + Y R+
Sbjct: 104 HQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY----RQ 158
Query: 348 VLTNLL 353
+ LL
Sbjct: 159 YMAGLL 164
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 259 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 318
G V+ +G Y + G + V I G V LH FG+++++ + P+ ++
Sbjct: 369 GTVLFNQGEEGTSWYIILKGSVNVV-IYGKGV---VCTLHEGDDFGKLALVNDAPRAASI 424
Query: 319 QVCE-LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESD 359
+ E C LR+DK+ F I+ R V N ++ KE D
Sbjct: 425 VLREDNCHFLRVDKEDFNRIL-------RDVEANTVRLKEHD 459
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 363 KQLQSDITFHISKHEAELALKVNSAAYHG----DLYQLEGLIRAGADPNRTDYDGRSPLH 418
KQL+S F SK + + +SA+Y+ ++ + L+ AGA N + PLH
Sbjct: 13 KQLKS---FLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL--LENEFPLH 67
Query: 419 LAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASL 472
AA+ +I+ L+ G+D + D+ GNT L A+ GN L VK+ L
Sbjct: 68 QAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRL 121
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
++ V F+ + QI + + E G + +G++ Y V G L+ E +
Sbjct: 44 LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSS 103
Query: 290 TEDYVSY--LHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 341
+D V+ L ++FGE SIL N P+ T+ E LLRI+++ F + + Y
Sbjct: 104 HQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 156
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
++ V F+ + QI + + E G + +G++ Y V G L+ E +
Sbjct: 44 LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSS 103
Query: 290 TEDYVSY--LHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 341
+D V+ L ++FGE SIL N P+ T+ E LLRI+++ F + + Y
Sbjct: 104 HQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 156
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 259 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 318
G V+ +G Y + G + V I G V LH FG+++++ + P+ ++
Sbjct: 369 GTVLFNQGEEGTSWYIILKGSVN-VVIYGKGV---VCTLHEGDDFGKLALVNDAPRAASI 424
Query: 319 QVCE-LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESD 359
+ E C LR+DK+ F I+ R V N ++ KE D
Sbjct: 425 VLREDNCHFLRVDKEDFNRIL-------RDVEANTVRLKEHD 459
>pdb|4AVA|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 From Mycobacterium Tuberculosis
pdb|4AVB|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVB|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 25/139 (17%)
Query: 235 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 294
+F+GC +E + + + G+V++ +G + G E + ++G +
Sbjct: 20 VFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-II 78
Query: 295 SYLHPNSSFGEVSILCNIPQPYTVQVCELC---------------------RLLRIDKQ- 332
+ P GE+++L + P+ TV E RLLR +Q
Sbjct: 79 ARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVGERLLRTARQR 138
Query: 333 --SFTNIIDIYFCDGRKVL 349
+F + I + DG +++
Sbjct: 139 LAAFVSPIPVRLADGTQLM 157
>pdb|3E97|A Chain A, Crystal Structure Of Transcriptional Regulator Of CrpFNR
Family (Yp_604437.1) From Deinococcus Geothermalis Dsm
11300 At 1.86 A Resolution
Length = 231
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 50/109 (45%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+++ PLF+ + + + + E F P E+++E+ + L+ V G + + G
Sbjct: 8 LKRSPLFQNVPEDAXREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGG 67
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
E + ++ GE ++L + + +V+ R L + ++ F I+
Sbjct: 68 RERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLXLHREHFELIL 116
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 15 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 72
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 334
E L P + FGE++++ P+ TV LL + F
Sbjct: 73 VE-----LGPGAFFGEMALISGEPESATVSAATTVSLLSLHSADF 112
>pdb|4AVC|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVC|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 26/146 (17%)
Query: 235 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 294
+F+GC +E + + + G+V++ +G + G E + ++G +
Sbjct: 20 VFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-II 78
Query: 295 SYLHPNSSFGEVSILCNIPQPYTVQVCELC---------------------RLLRIDKQ- 332
+ P GE+++L + P+ TV E RLLR +Q
Sbjct: 79 ARALPGXIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATXVHIPGVGERLLRTARQR 138
Query: 333 --SFTNIIDIYFCDGRKV-LTNLLQG 355
+F + I + DG ++ L +L G
Sbjct: 139 LAAFVSPIPVRLADGTQLXLRPVLPG 164
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 70
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 334
E L P + FGE++++ P+ TV LL + F
Sbjct: 71 VE-----LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADF 110
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 70
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 334
E L P + FGE++++ P+ TV LL + F
Sbjct: 71 VE-----LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADF 110
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 17 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 74
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 334
E L P + FGE++++ P+ TV LL + F
Sbjct: 75 VE-----LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADF 114
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 15 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 72
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 334
E L P + FGE++++ P+ TV LL + F
Sbjct: 73 VE-----LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADF 112
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 244 INQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303
I +IV ++ + I+++G+V +Y + GK+E + + G + + + P F
Sbjct: 55 IQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVE---VTKEGVK--LCTMGPGKVF 109
Query: 304 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
GE++IL N + TV+ +L ID+Q F I+
Sbjct: 110 GELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIM 144
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEV 283
+ +VPLF+ ++ I RL F ++ +G+ V+++ F+ G+LE V
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV 61
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ + PLF E ++ E G+ + +G+ D+LY V GK++ +G
Sbjct: 7 LRRNPLFAALDDEQSAELRASXSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDG 66
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI---DKQSFTNIIDIYFCDGR 346
E+ ++ + P+ GE+S+ P+ T +LL + D Q + N+
Sbjct: 67 RENXLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNV-------RP 119
Query: 347 KVLTNLLQGKESDLR-LKQLQSDITF 371
+V T LL+ LR SD+ F
Sbjct: 120 EVATALLRAVARRLRKTNDAXSDLVF 145
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 386 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 445
+AA D L L+ D + D +GR+ L A G ++ + L + G D++ +D
Sbjct: 50 TAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 108
Query: 446 GN-TPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVAR 487
G T L A Y LV+ GA + VE+ +AR
Sbjct: 109 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 31/137 (22%)
Query: 415 SPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV 474
+P AA + E+ ++ L++ D++ D G T LL G+D LL + GA
Sbjct: 46 TPWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA---- 100
Query: 475 EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 534
DL R + G+ T LH+AA + + LVE GA
Sbjct: 101 ----------------DLDHRDMRGGL----------TALHMAAGYVRPEVVEALVELGA 134
Query: 535 SVFPKDRWGNTPLDEGR 551
+ +D G T L+ R
Sbjct: 135 DIEVEDERGLTALELAR 151
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 15 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 72
Query: 290 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 334
E L P + FGE++++ P TV LL + F
Sbjct: 73 VE-----LGPGAFFGEMALISGEPWSATVSAATTVSLLSLHSADF 112
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 244 INQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303
I +IV ++ + I+++G+V +Y + GK+E + + G + + + P F
Sbjct: 39 IQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVE---VTKEGVK--LCTMGPGKVF 93
Query: 304 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 338
GE++IL N + TV+ +L ID+Q F I+
Sbjct: 94 GELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIM 128
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 259 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 318
G V+ +G Y + G + V I G V LH FG+++++ + P+ ++
Sbjct: 64 GTVLFNQGEEGTSWYIILKGSVN-VVIYGKGV---VCTLHEGDDFGKLALVNDAPRAASI 119
Query: 319 QVCE-LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESD 359
+ E C LR+DK+ F I+ R V N ++ KE D
Sbjct: 120 VLREDNCHFLRVDKEDFNRIL-------RDVEANTVRLKEHD 154
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 108 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 141
I ++Y SVVT+TTVGYGD +F ++Y+
Sbjct: 34 IDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYI 67
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 399 LIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL 450
L AGAD + D G + LH+AA E++ L++ G DI ++D G T L
Sbjct: 96 LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 405 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGN-TPLLEAIKYGNDGAAS 463
D + D +GR+ L A G ++ + L + G D++ +D G T L A Y
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 464 LLVKEGASLNVEEAGSFLCTAVAR 487
LV+ GA + VE+ +AR
Sbjct: 129 ALVELGADIEVEDERGLTALELAR 152
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 31/137 (22%)
Query: 415 SPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV 474
+P AA + E+ ++ L++ D++ D G T LL G+D LL + GA
Sbjct: 47 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA---- 101
Query: 475 EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 534
DL R + G+ T LH+AA + + LVE GA
Sbjct: 102 ----------------DLDHRDMRGGL----------TALHMAAGYVRPEVVEALVELGA 135
Query: 535 SVFPKDRWGNTPLDEGR 551
+ +D G T L+ R
Sbjct: 136 DIEVEDERGLTALELAR 152
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV+T TTVGYGD++ V L
Sbjct: 40 TYPRALWWSVITATTVGYGDLYPVTL 65
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKT 165
+Y +++ ++VT TTVGYGD+ V I S M+ G IG +T+ I +
Sbjct: 43 NYPDALWWAIVTATTVGYGDIVPVT----PIGRILASIMMLFGIAFIGMITSTITNFFRC 98
Query: 166 EK 167
+K
Sbjct: 99 KK 100
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 108 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 141
I ++Y SVVT+TTVG+GD +F ++Y+
Sbjct: 34 IDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYI 67
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 108 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 141
I +++ SVVT+TTVGYGD +F ++Y+
Sbjct: 34 IDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYI 67
>pdb|3H3Z|A Chain A, Crystal Structure Of A Putative Cyclic Nucleotide Binding
Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3 At 2.35
A Resolution
pdb|3H3Z|B Chain B, Crystal Structure Of A Putative Cyclic Nucleotide Binding
Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3 At 2.35
A Resolution
Length = 235
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 31/79 (39%)
Query: 259 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 318
GE + + ++ V G ++ G+E VS SFGE L N P P +
Sbjct: 40 GETLFLQEEKAQAIHVVIDGWVKLFRXTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSA 99
Query: 319 QVCELCRLLRIDKQSFTNI 337
+ C + I F ++
Sbjct: 100 EAVTPCEVXHIPSPVFVSL 118
>pdb|1ZYB|A Chain A, Crystal Structure Of Transcription Regulator From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.15 A
Resolution
Length = 232
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 232 KVPLFKGCSSEFINQIV--IRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 289
++PLF+G E I+ ++LH GE I++ GN QL F+ G E+ I N
Sbjct: 22 QLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKG---EISIVTNA 78
Query: 290 TEDYVS---------YLHPNSSFG 304
E+ + + P S FG
Sbjct: 79 KENIYTVIEQIEAPYLIEPQSLFG 102
>pdb|3FX3|A Chain A, Structure Of A Putative Camp-Binding Regulatory Protein
From Silicibacter Pomeroyi Dss-3
pdb|3FX3|B Chain B, Structure Of A Putative Camp-Binding Regulatory Protein
From Silicibacter Pomeroyi Dss-3
Length = 237
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 31/79 (39%)
Query: 259 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 318
GE + + ++ V G ++ G+E VS SFGE L N P P +
Sbjct: 42 GETLFLQEEKAQAIHVVIDGWVKLFRXTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSA 101
Query: 319 QVCELCRLLRIDKQSFTNI 337
+ C + I F ++
Sbjct: 102 EAVTPCEVXHIPSPVFVSL 120
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 108 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 141
I +++ SVVT+TTVGYGD +F ++Y+
Sbjct: 34 IDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYI 67
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 108 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 141
I ++Y SVVT+TTVGYG+ +F ++Y+
Sbjct: 34 IDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYI 67
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 108 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 141
I ++Y SVVT+TTVGYG+ +F ++Y+
Sbjct: 34 IDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYI 67
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL-REMVFIMIYV----SFDMILGA 149
+Y +++ SV T TTVGYGD++ V L +V +++ V SF ++ A
Sbjct: 68 TYPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAA 116
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 89 KMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILG 148
++GD A+ GF + + + SV T+ TVGYGD+H + V+ + ++ +G
Sbjct: 83 QLGDAPIANQSPPGF----VGAFFFSVETLATVGYGDMHP----QTVYAHAIATLEIFVG 134
Query: 149 AYLIGNMTALI 159
I T L+
Sbjct: 135 MSGIALSTGLV 145
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 411 YDGRSPLHLAASRGYEEIMTFLIQ---KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVK 467
Y G PL LAA +++++L++ + + D+ GNT L + ++ A ++ +
Sbjct: 139 YFGELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALV 198
Query: 468 EGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEG 521
+ +AG+ LC V D R+ TPL +AA EG
Sbjct: 199 TSXYDGLLQAGARLCPTVQLED---------------IRNLQDLTPLKLAAKEG 237
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 89 KMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILG 148
++GD A+ GF + + + SV T+ TVGYGD+H + V+ + ++ +G
Sbjct: 83 QLGDAPIANQSPPGF----VGAFFFSVETLATVGYGDMHP----QTVYAHAIATLEIFVG 134
Query: 149 AYLIGNMTALI 159
I T L+
Sbjct: 135 MSGIALSTGLV 145
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
SY +++ SV T TTVGYGD++ V L
Sbjct: 84 SYPDALWWSVETATTVGYGDLYPVTL 109
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVATATTVGYGDLYPVTL 86
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 40 TYPRALWWSVATATTVGYGDLYPVTL 65
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL-REMVFIMIYV----SFDMILGA 149
+Y +++ SV T TTVGYGD++ V L +V +++ V SF ++ A
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAA 109
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL-REMVFIMIYV----SFDMILGA 149
+Y +++ SV T TTVGYGD++ V L +V +++ V SF ++ A
Sbjct: 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAA 115
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL-REMVFIMIYV----SFDMILGA 149
+Y +++ SV T TTVGYGD++ V L +V +++ V SF ++ A
Sbjct: 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAA 88
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPAALWWSVETATTVGYGDLYPVTL 86
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 40 TYPRALWWSVSTATTVGYGDLYPVTL 65
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 40 TYPRALWWSVQTATTVGYGDLYPVTL 65
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTL 86
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 41 TYPRALWWSVETATTVGYGDLYPVTL 66
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTL 86
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTL 86
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 40 TYPRALWWSVETATTVGYGDLYPVTL 65
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTL 86
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTL 86
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 39 TYPRALWWSVETATTVGYGDLYPVTL 64
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 411 YDGRSPLHLAASRGYEEIMTFLIQKG---VDINLKDNFGNTPL 450
Y G PL LAA I+ FL+Q DI+ +D+ GNT L
Sbjct: 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL 188
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 411 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN 444
Y G++ LH+A R ++T L++ G D+ N
Sbjct: 99 YKGQTALHIAIERRNXTLVTLLVENGADVQAAAN 132
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 415 SPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN-DGAASLLVKEGASLN 473
+PLH AA RG + + V +N D G+T L A G+ D L + LN
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 474 VEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAAS 519
+ + L A +G +D+++ +L+ G + R+ + + A +
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATN 182
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL 131
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVHTATTVGYGDLYPVTL 86
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 108 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 141
I ++Y SVVT+TTVG GD +F ++Y+
Sbjct: 34 IDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYI 67
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 410 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND 459
D G +PLH S E++ L++ G + DN G + L++A+K N+
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 177
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 450 LLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS-DLLKRVLSNGIDPNTRDY 508
+LEA G D L + + EE L VA S L+ ++ NG + +
Sbjct: 148 VLEAFANGQDFGQPLPGPDAQA--PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA 205
Query: 509 DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 567
D T LH AA KLL++ A V + G T LD R +K +LLE A++
Sbjct: 206 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 264
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 412 DGRSP----LHLA---ASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASL 464
D ++P LHLA A++ ++ F+IQ G ++ K GNT L A Y L
Sbjct: 166 DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL 225
Query: 465 LVKEGASL-NVEEAG 478
L+K A + V EAG
Sbjct: 226 LLKGRALVGTVNEAG 240
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 33/66 (50%)
Query: 244 INQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303
+++++ H + I+ G+ + L+F+ G + + +++G E + YL+ F
Sbjct: 6 LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF 65
Query: 304 GEVSIL 309
GE+ +
Sbjct: 66 GELGLF 71
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL-REMVFIMIYV----SFDMILGA 149
+Y +++ SV T TTVGYGD+ V L +V +++ V SF ++ A
Sbjct: 39 TYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAA 87
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 106 SYITSMYASVVTMTTVGYGDVHAVNL-REMVFIMIYV----SFDMILGA 149
+Y +++ SV T TTVGYGD+ V L +V +++ V SF ++ A
Sbjct: 40 TYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAA 88
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 105 KSYITSMYASVVTMTTVGYGDV 126
KS +++ +VVT TTVGYGDV
Sbjct: 176 KSVFDALWWAVVTATTVGYGDV 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,941,103
Number of Sequences: 62578
Number of extensions: 865888
Number of successful extensions: 2887
Number of sequences better than 100.0: 222
Number of HSP's better than 100.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1942
Number of HSP's gapped (non-prelim): 623
length of query: 662
length of database: 14,973,337
effective HSP length: 105
effective length of query: 557
effective length of database: 8,402,647
effective search space: 4680274379
effective search space used: 4680274379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)