Query 006072
Match_columns 662
No_of_seqs 838 out of 4927
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 15:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xai_A ASB-9, ankyrin repeat a 100.0 5.4E-37 1.9E-41 304.0 24.2 206 379-585 2-208 (261)
2 1oy3_D Transcription factor in 100.0 2.8E-37 9.7E-42 309.9 21.1 213 374-586 3-268 (282)
3 3d9h_A CDNA FLJ77766, highly s 100.0 1.5E-36 5E-41 304.8 24.7 211 373-584 52-263 (285)
4 3b7b_A Euchromatic histone-lys 100.0 2.9E-36 1E-40 294.3 24.3 214 372-585 3-219 (237)
5 1yyh_A HN1;, notch 1, ankyrin 100.0 7.8E-37 2.7E-41 301.5 20.1 209 373-581 3-228 (253)
6 3utm_A Tankyrase-1; tankyrase, 100.0 4.7E-36 1.6E-40 311.0 25.9 239 343-582 22-319 (351)
7 1k1a_A B-cell lymphoma 3-encod 100.0 7E-36 2.4E-40 292.4 25.4 211 374-584 3-224 (241)
8 4b93_B Ankyrin repeat domain-c 100.0 3.2E-36 1.1E-40 298.7 20.4 210 375-584 6-226 (269)
9 3aji_A 26S proteasome non-ATPa 100.0 4.7E-36 1.6E-40 291.7 21.0 196 373-568 33-230 (231)
10 2rfa_A Transient receptor pote 100.0 6.8E-36 2.3E-40 290.7 21.4 196 379-574 2-228 (232)
11 2f8y_A Notch homolog 1, transl 100.0 4.8E-35 1.6E-39 282.8 25.2 195 376-570 21-218 (223)
12 2dzn_A Probable 26S proteasome 100.0 3.9E-35 1.3E-39 284.5 24.5 206 380-585 2-217 (228)
13 1yyh_A HN1;, notch 1, ankyrin 100.0 3.9E-35 1.3E-39 289.3 22.9 194 375-568 52-248 (253)
14 3aji_A 26S proteasome non-ATPa 100.0 5.4E-35 1.8E-39 284.1 22.5 204 379-582 5-211 (231)
15 1ikn_D Protein (I-kappa-B-alph 100.0 3.6E-36 1.2E-40 293.5 14.0 204 375-578 3-221 (236)
16 1wdy_A 2-5A-dependent ribonucl 100.0 2.8E-34 9.5E-39 288.3 27.2 236 345-581 5-258 (285)
17 4b93_B Ankyrin repeat domain-c 100.0 2E-35 6.9E-40 293.0 16.5 197 372-568 44-244 (269)
18 1k1a_A B-cell lymphoma 3-encod 100.0 2.9E-35 9.9E-40 288.0 16.9 223 345-567 9-240 (241)
19 3hra_A Ankyrin repeat family p 100.0 3E-34 1E-38 272.4 22.9 188 379-566 4-201 (201)
20 3kea_A K1L; tropism, ANK repea 100.0 3.4E-35 1.2E-39 294.7 16.4 198 373-573 24-225 (285)
21 4gpm_A Engineered protein OR26 100.0 3.4E-34 1.2E-38 262.3 21.2 159 381-570 5-163 (169)
22 1s70_B 130 kDa myosin-binding 100.0 1.4E-34 4.8E-39 293.0 19.9 208 376-583 36-272 (299)
23 1wdy_A 2-5A-dependent ribonucl 100.0 1.1E-33 3.9E-38 283.8 26.3 225 347-573 41-283 (285)
24 2etb_A Transient receptor pote 100.0 2.9E-35 1E-39 290.8 13.4 193 380-572 2-250 (256)
25 2xai_A ASB-9, ankyrin repeat a 100.0 2.4E-34 8.2E-39 285.0 20.0 214 350-569 8-223 (261)
26 3ljn_A Hypothetical protein; a 100.0 2.4E-34 8.2E-39 299.9 20.9 227 343-573 18-274 (364)
27 2fo1_E LIN-12 protein; beta-ba 100.0 2.5E-34 8.6E-39 300.2 19.5 227 343-569 123-372 (373)
28 1n11_A Ankyrin; clathrin, BAND 100.0 1.1E-33 3.7E-38 302.6 24.6 211 373-583 172-384 (437)
29 2pnn_A Transient receptor pote 100.0 8.6E-35 2.9E-39 290.4 14.2 205 373-577 6-268 (273)
30 3d9h_A CDNA FLJ77766, highly s 100.0 1.2E-33 4.1E-38 283.6 21.6 216 349-570 63-281 (285)
31 3b7b_A Euchromatic histone-lys 100.0 3.1E-33 1.1E-37 272.9 22.4 215 348-564 14-231 (237)
32 3ljn_A Hypothetical protein; a 100.0 1E-33 3.5E-38 295.1 20.1 211 370-582 10-250 (364)
33 1n11_A Ankyrin; clathrin, BAND 100.0 3.7E-33 1.3E-37 298.5 24.1 235 345-581 14-250 (437)
34 3eu9_A Huntingtin-interacting 100.0 5.8E-33 2E-37 271.2 22.9 206 375-580 4-214 (240)
35 2fo1_E LIN-12 protein; beta-ba 100.0 6.2E-34 2.1E-38 297.2 16.3 210 373-582 117-352 (373)
36 1oy3_D Transcription factor in 100.0 1.2E-33 4.1E-38 283.4 17.8 209 347-555 11-270 (282)
37 3eu9_A Huntingtin-interacting 100.0 7.6E-33 2.6E-37 270.4 22.5 221 349-571 13-238 (240)
38 4g8k_A 2-5A-dependent ribonucl 100.0 1.9E-32 6.4E-37 282.3 25.3 226 345-571 25-301 (337)
39 2dzn_A Probable 26S proteasome 100.0 6.7E-33 2.3E-37 268.7 18.9 213 349-565 6-227 (228)
40 3beh_A MLL3241 protein; transm 100.0 2.6E-34 9E-39 296.9 9.5 254 14-355 95-348 (355)
41 2f8y_A Notch homolog 1, transl 100.0 8E-33 2.7E-37 267.2 18.7 191 391-581 2-196 (223)
42 3utm_A Tankyrase-1; tankyrase, 100.0 3.4E-32 1.2E-36 281.9 24.7 210 373-582 17-286 (351)
43 3jxi_A Vanilloid receptor-rela 100.0 1.2E-33 4.2E-38 279.8 12.6 194 379-572 4-254 (260)
44 3kea_A K1L; tropism, ANK repea 100.0 2.8E-33 9.4E-38 280.8 15.2 219 344-573 30-251 (285)
45 4g8k_A 2-5A-dependent ribonucl 100.0 6.4E-32 2.2E-36 278.4 25.0 208 375-582 20-279 (337)
46 1s70_B 130 kDa myosin-binding 100.0 2.6E-32 8.9E-37 276.3 16.6 216 346-563 41-285 (299)
47 4hbd_A KN motif and ankyrin re 100.0 7.8E-32 2.7E-36 268.8 15.3 191 377-567 73-274 (276)
48 2rfm_A Putative ankyrin repeat 100.0 1E-30 3.5E-35 246.1 18.0 161 406-566 28-190 (192)
49 2ptm_A Hyperpolarization-activ 100.0 6.5E-30 2.2E-34 241.6 22.4 190 162-355 4-194 (198)
50 3v31_A Ankyrin repeat family A 100.0 2.4E-30 8.3E-35 237.6 18.8 162 379-571 2-163 (167)
51 2y1l_E Darpin-8.4; hydrolase-i 100.0 5.4E-30 1.8E-34 235.7 20.7 160 376-566 10-169 (169)
52 1ihb_A P18-INK4C(INK6), cyclin 100.0 2E-30 6.8E-35 236.8 17.5 157 380-568 5-162 (162)
53 3v30_A DNA-binding protein rfx 100.0 2.5E-30 8.6E-35 238.8 15.8 168 381-579 3-171 (172)
54 3v30_A DNA-binding protein rfx 100.0 5.4E-30 1.8E-34 236.5 17.6 139 413-582 2-141 (172)
55 1ikn_D Protein (I-kappa-B-alph 100.0 9.9E-31 3.4E-35 254.9 12.1 207 347-553 10-229 (236)
56 3ukn_A Novel protein similar t 100.0 5.7E-30 1.9E-34 244.8 16.7 194 156-355 1-199 (212)
57 2rfa_A Transient receptor pote 100.0 2.1E-29 7.1E-34 244.8 20.1 169 412-580 2-201 (232)
58 3bpz_A Potassium/sodium hyperp 100.0 3.5E-29 1.2E-33 237.3 20.7 188 162-354 5-193 (202)
59 1sw6_A Regulatory protein SWI6 100.0 3.1E-30 1.1E-34 264.0 13.8 195 382-584 99-324 (327)
60 1awc_B Protein (GA binding pro 100.0 4.5E-29 1.5E-33 225.5 19.6 151 380-562 2-152 (153)
61 3twr_A Tankyrase-2; ankyrin re 100.0 1.9E-29 6.5E-34 231.1 17.2 160 376-567 4-164 (165)
62 3f6q_A Integrin-linked protein 100.0 2.4E-29 8.3E-34 233.7 17.4 166 378-574 3-169 (179)
63 2rfm_A Putative ankyrin repeat 100.0 1.1E-29 3.9E-34 238.9 14.6 165 369-533 24-190 (192)
64 1sw6_A Regulatory protein SWI6 100.0 5.2E-30 1.8E-34 262.3 12.7 176 371-554 121-327 (327)
65 3hra_A Ankyrin repeat family p 100.0 3.8E-28 1.3E-32 230.2 20.9 171 411-581 3-183 (201)
66 2etb_A Transient receptor pote 100.0 2.9E-29 1E-33 247.7 13.5 170 412-581 1-226 (256)
67 2vge_A RELA-associated inhibit 100.0 6.7E-32 2.3E-36 261.0 -5.8 185 374-561 15-206 (229)
68 1bd8_A P19INK4D CDK4/6 inhibit 100.0 3.4E-28 1.2E-32 220.4 18.8 153 380-565 2-155 (156)
69 2pnn_A Transient receptor pote 100.0 4.8E-29 1.6E-33 248.7 12.7 206 343-548 11-272 (273)
70 4gpm_A Engineered protein OR26 100.0 1.6E-27 5.5E-32 217.9 17.7 156 350-538 9-164 (169)
71 1ycs_B 53BP2, P53BP2; ankyrin 99.9 7.5E-29 2.6E-33 241.8 7.3 162 379-572 4-168 (239)
72 3jxi_A Vanilloid receptor-rela 99.9 5.1E-28 1.7E-32 239.4 11.8 193 346-538 6-253 (260)
73 1ycs_B 53BP2, P53BP2; ankyrin 99.9 4.7E-28 1.6E-32 236.2 11.0 139 445-583 4-144 (239)
74 3t8k_A Uncharacterized protein 99.9 5.7E-28 1.9E-32 224.8 10.6 168 378-572 4-183 (186)
75 4hbd_A KN motif and ankyrin re 99.9 2.1E-27 7.3E-32 236.6 15.0 164 370-533 101-273 (276)
76 1d9s_A Cyclin-dependent kinase 99.9 4.1E-27 1.4E-31 207.9 13.5 134 403-568 2-136 (136)
77 2vge_A RELA-associated inhibit 99.9 7.1E-28 2.4E-32 232.7 5.3 186 396-584 1-196 (229)
78 1bi7_B P16INK4A, MTS1, multipl 99.9 1.6E-26 5.3E-31 209.4 11.1 142 407-549 6-150 (156)
79 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.3E-24 4.4E-29 188.9 16.7 126 412-568 1-126 (126)
80 2jab_A H10-2-G3; HER2, darpin, 99.9 8.7E-25 3E-29 192.9 14.8 125 411-566 12-136 (136)
81 2aja_A Ankyrin repeat family p 99.9 4.4E-27 1.5E-31 242.8 -0.3 186 376-569 88-345 (376)
82 1d9s_A Cyclin-dependent kinase 99.9 2.5E-25 8.4E-30 196.4 10.8 132 372-535 4-136 (136)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 2.9E-25 9.9E-30 201.0 11.5 141 439-580 5-148 (156)
84 3v31_A Ankyrin repeat family A 99.9 1.7E-24 5.7E-29 198.5 16.2 139 412-581 2-140 (167)
85 3c5r_A BARD-1, BRCA1-associate 99.9 3.5E-25 1.2E-29 195.7 9.8 134 403-568 1-134 (137)
86 1ihb_A P18-INK4C(INK6), cyclin 99.9 4.2E-24 1.4E-28 194.7 16.1 155 348-535 8-162 (162)
87 2y1l_E Darpin-8.4; hydrolase-i 99.9 4E-24 1.4E-28 196.3 16.0 140 411-581 12-151 (169)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 6.5E-24 2.2E-28 187.3 16.0 128 375-533 9-136 (136)
89 2aja_A Ankyrin repeat family p 99.9 2.1E-26 7.2E-31 237.7 -0.8 179 379-572 64-254 (376)
90 3deo_A Signal recognition part 99.9 1.9E-25 6.6E-30 208.0 5.5 140 377-565 41-181 (183)
91 3twr_A Tankyrase-2; ankyrin re 99.9 7.7E-24 2.6E-28 193.6 16.0 143 410-583 5-148 (165)
92 3f6q_A Integrin-linked protein 99.9 1.5E-23 5.3E-28 194.4 17.4 141 411-582 3-144 (179)
93 1awc_B Protein (GA binding pro 99.9 9.2E-24 3.1E-28 190.4 14.7 137 414-582 3-139 (153)
94 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.4E-23 4.8E-28 182.3 14.7 126 379-535 1-126 (126)
95 3ui2_A Signal recognition part 99.9 1.4E-23 4.6E-28 205.0 14.1 144 377-569 42-186 (244)
96 1bd8_A P19INK4D CDK4/6 inhibit 99.9 5.5E-23 1.9E-27 186.0 16.6 151 348-532 5-155 (156)
97 2b0o_E UPLC1; arfgap, structur 99.9 3.2E-23 1.1E-27 208.4 12.1 138 413-556 151-299 (301)
98 3ehr_A Osteoclast-stimulating 99.9 1.7E-23 5.9E-28 201.4 9.4 141 410-580 70-210 (222)
99 3aaa_C Myotrophin, protein V-1 99.9 5.5E-23 1.9E-27 177.8 11.1 111 411-552 5-115 (123)
100 3deo_A Signal recognition part 99.9 1.1E-22 3.9E-27 189.2 13.8 112 343-457 42-154 (183)
101 3t8k_A Uncharacterized protein 99.9 3.8E-23 1.3E-27 192.1 9.0 159 353-540 14-184 (186)
102 3ehr_A Osteoclast-stimulating 99.9 8.9E-23 3.1E-27 196.4 9.4 138 376-544 69-207 (222)
103 3c5r_A BARD-1, BRCA1-associate 99.9 9.3E-23 3.2E-27 180.1 7.8 130 375-535 5-134 (137)
104 3aaa_C Myotrophin, protein V-1 99.9 4.6E-22 1.6E-26 172.0 11.7 118 377-525 4-121 (123)
105 1dcq_A PYK2-associated protein 99.9 1.2E-21 3.9E-26 194.8 16.0 192 376-571 62-266 (278)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.3E-21 1.5E-25 156.7 12.4 93 476-568 1-93 (93)
107 3jue_A Arfgap with coiled-coil 99.8 6.6E-21 2.2E-25 195.8 15.7 145 379-554 198-348 (368)
108 2b0o_E UPLC1; arfgap, structur 99.8 7.6E-21 2.6E-25 191.1 15.5 125 444-568 149-284 (301)
109 3lvq_E ARF-GAP with SH3 domain 99.8 4.5E-21 1.5E-25 207.3 14.8 126 382-538 134-268 (497)
110 1dcq_A PYK2-associated protein 99.8 2.4E-20 8.2E-25 185.2 17.2 130 376-536 126-264 (278)
111 3ui2_A Signal recognition part 99.8 3.2E-22 1.1E-26 195.3 2.2 143 378-555 13-156 (244)
112 3jue_A Arfgap with coiled-coil 99.8 1.9E-20 6.4E-25 192.4 14.5 123 447-569 200-327 (368)
113 3lvq_E ARF-GAP with SH3 domain 99.8 1.9E-20 6.5E-25 202.4 15.1 128 449-576 135-273 (497)
114 1n0q_A 3ANK, 3 ankyrin repeats 99.8 4E-20 1.4E-24 150.9 11.5 93 379-471 1-93 (93)
115 4f8a_A Potassium voltage-gated 99.8 1.3E-19 4.3E-24 164.5 14.2 143 206-353 5-149 (160)
116 2l6b_A NR1C; ankyrin, consensu 99.8 2.9E-20 1E-24 158.5 8.5 107 409-546 5-111 (115)
117 2l6b_A NR1C; ankyrin, consensu 99.8 1.4E-19 4.8E-24 154.2 9.4 106 475-580 7-112 (115)
118 1orq_C Potassium channel; volt 99.8 1.2E-18 4.2E-23 166.8 12.7 137 1-161 81-220 (223)
119 3gyd_A CNMP-BD protein, cyclic 99.8 3.7E-18 1.3E-22 158.9 13.3 150 204-353 11-164 (187)
120 3mdp_A Cyclic nucleotide-bindi 99.8 4.8E-18 1.6E-22 150.6 12.7 128 227-354 5-135 (142)
121 3idb_B CAMP-dependent protein 99.7 6.5E-18 2.2E-22 153.3 11.4 127 223-350 33-159 (161)
122 3ocp_A PRKG1 protein; serine/t 99.7 7.5E-18 2.6E-22 148.8 10.8 131 212-347 7-137 (139)
123 2pqq_A Putative transcriptiona 99.7 2.3E-17 7.8E-22 147.5 14.1 128 227-354 4-131 (149)
124 2a9h_A Voltage-gated potassium 99.7 1.4E-17 4.7E-22 146.7 12.2 57 106-162 84-140 (155)
125 2zgd_A 3 repeat synthetic anky 99.7 2.1E-17 7.1E-22 139.3 11.6 88 475-562 22-109 (110)
126 2z69_A DNR protein; beta barre 99.7 4.5E-17 1.5E-21 146.5 14.1 130 226-355 10-140 (154)
127 2ih3_C Voltage-gated potassium 99.7 2.3E-17 7.8E-22 139.9 10.5 56 106-161 61-116 (122)
128 2zgd_A 3 repeat synthetic anky 99.7 5.1E-17 1.7E-21 136.9 11.1 96 370-465 14-109 (110)
129 4h33_A LMO2059 protein; bilaye 99.7 6.3E-17 2.2E-21 140.0 10.2 92 106-197 43-135 (137)
130 3dn7_A Cyclic nucleotide bindi 99.7 1.8E-16 6.1E-21 148.6 13.6 128 227-354 6-134 (194)
131 4ev0_A Transcription regulator 99.7 2.5E-16 8.5E-21 150.4 14.5 126 230-355 1-126 (216)
132 1vp6_A CNBD, cyclic-nucleotide 99.7 3.4E-16 1.2E-20 137.9 13.5 124 226-356 9-132 (138)
133 3fx3_A Cyclic nucleotide-bindi 99.7 3.5E-16 1.2E-20 151.7 13.7 131 225-355 8-138 (237)
134 3e97_A Transcriptional regulat 99.7 3.3E-16 1.1E-20 151.3 13.0 129 227-355 5-133 (231)
135 3d0s_A Transcriptional regulat 99.7 2E-16 6.7E-21 152.4 10.9 129 227-355 5-133 (227)
136 3vou_A ION transport 2 domain 99.7 1.4E-15 4.8E-20 134.2 15.3 112 50-191 26-148 (148)
137 3pna_A CAMP-dependent protein 99.7 7.3E-16 2.5E-20 138.5 13.6 119 224-347 34-152 (154)
138 1wgp_A Probable cyclic nucleot 99.7 2E-16 7E-21 139.1 9.7 118 228-346 6-134 (137)
139 3dv8_A Transcriptional regulat 99.7 9.4E-16 3.2E-20 146.8 14.8 127 228-354 3-131 (220)
140 1zyb_A Transcription regulator 99.7 9.4E-16 3.2E-20 148.1 14.5 131 225-355 15-148 (232)
141 3dkw_A DNR protein; CRP-FNR, H 99.6 4.5E-16 1.5E-20 149.9 10.3 129 227-355 8-137 (227)
142 3shr_A CGMP-dependent protein 99.6 1.3E-15 4.3E-20 153.4 13.5 141 209-354 20-160 (299)
143 4ava_A Lysine acetyltransferas 99.6 2E-15 7E-20 154.4 15.1 127 227-355 12-138 (333)
144 2gau_A Transcriptional regulat 99.6 1.5E-15 5.1E-20 146.8 13.1 125 231-355 13-137 (232)
145 3iwz_A CAP-like, catabolite ac 99.6 3.4E-15 1.1E-19 144.1 14.3 128 227-354 10-143 (230)
146 3eff_K Voltage-gated potassium 99.6 2E-15 7E-20 131.8 11.0 90 48-161 6-95 (139)
147 3shr_A CGMP-dependent protein 99.6 2.3E-15 7.8E-20 151.5 11.8 132 224-355 153-285 (299)
148 2d93_A RAP guanine nucleotide 99.6 3E-16 1E-20 137.5 4.5 116 223-343 11-128 (134)
149 2r9r_B Paddle chimera voltage 99.6 1.3E-15 4.3E-20 162.6 10.0 124 14-161 306-430 (514)
150 3ryp_A Catabolite gene activat 99.6 1.3E-14 4.6E-19 137.6 13.8 122 234-355 2-124 (210)
151 3tnp_B CAMP-dependent protein 99.6 5.1E-15 1.7E-19 155.3 10.6 124 222-346 139-262 (416)
152 2oz6_A Virulence factor regula 99.6 2.2E-14 7.5E-19 135.8 14.0 117 239-355 1-121 (207)
153 2qcs_B CAMP-dependent protein 99.6 2.8E-14 9.4E-19 143.0 14.1 129 225-353 154-283 (291)
154 3of1_A CAMP-dependent protein 99.5 1.6E-14 5.5E-19 140.8 11.5 124 226-354 5-128 (246)
155 2qcs_B CAMP-dependent protein 99.5 4.9E-14 1.7E-18 141.2 15.2 127 224-355 35-161 (291)
156 3kcc_A Catabolite gene activat 99.5 5E-14 1.7E-18 138.4 13.4 119 237-355 55-174 (260)
157 1o7f_A CAMP-dependent RAP1 gua 99.5 1.9E-14 6.4E-19 154.6 11.0 142 213-355 27-170 (469)
158 1o5l_A Transcriptional regulat 99.5 2.6E-14 8.8E-19 136.0 10.7 123 233-355 4-127 (213)
159 3of1_A CAMP-dependent protein 99.5 3.7E-14 1.3E-18 138.2 12.0 117 225-345 122-238 (246)
160 4din_B CAMP-dependent protein 99.5 4.5E-14 1.5E-18 146.5 13.2 127 224-355 126-252 (381)
161 2fmy_A COOA, carbon monoxide o 99.5 2.1E-14 7.2E-19 137.4 9.3 120 228-355 4-123 (220)
162 4din_B CAMP-dependent protein 99.5 3.6E-14 1.2E-18 147.3 11.7 130 223-352 243-373 (381)
163 2q67_A Potassium channel prote 99.5 4.1E-13 1.4E-17 111.9 14.3 55 107-161 50-104 (114)
164 1ft9_A Carbon monoxide oxidati 99.5 3.1E-14 1.1E-18 136.4 8.5 119 229-355 1-119 (222)
165 3tnp_B CAMP-dependent protein 99.5 6.2E-14 2.1E-18 147.0 10.6 127 226-352 265-397 (416)
166 3e6c_C CPRK, cyclic nucleotide 99.5 1.2E-13 4.1E-18 134.9 10.7 124 229-355 10-133 (250)
167 2k1e_A Water soluble analogue 99.5 1.1E-14 3.6E-19 119.5 2.4 89 49-161 7-95 (103)
168 3ldc_A Calcium-gated potassium 99.4 4.8E-13 1.6E-17 104.2 10.7 53 107-159 29-81 (82)
169 3ouf_A Potassium channel prote 99.4 8.7E-13 3E-17 106.4 11.9 82 50-161 6-87 (97)
170 1o7f_A CAMP-dependent RAP1 gua 99.4 6.4E-13 2.2E-17 142.6 13.4 123 224-350 333-457 (469)
171 3la7_A Global nitrogen regulat 99.4 9.1E-13 3.1E-17 128.0 12.7 114 241-354 30-148 (243)
172 2bgc_A PRFA; bacterial infecti 99.4 1.3E-12 4.6E-17 126.4 13.3 117 238-355 3-124 (238)
173 4f7z_A RAP guanine nucleotide 99.4 9.1E-13 3.1E-17 154.2 13.3 122 223-345 37-160 (999)
174 3cf6_E RAP guanine nucleotide 99.3 2.3E-12 7.7E-17 142.7 11.3 127 218-348 22-150 (694)
175 3b02_A Transcriptional regulat 99.3 9E-12 3.1E-16 116.5 10.1 94 254-354 2-95 (195)
176 4f7z_A RAP guanine nucleotide 99.2 4.1E-11 1.4E-15 140.2 14.4 113 224-340 333-447 (999)
177 1xl4_A Inward rectifier potass 99.2 3.9E-11 1.3E-15 117.8 10.4 56 106-161 82-137 (301)
178 2zcw_A TTHA1359, transcription 99.2 3.3E-11 1.1E-15 113.3 8.0 100 247-354 1-102 (202)
179 1p7b_A Integral membrane chann 99.2 3.3E-11 1.1E-15 119.5 7.3 56 106-161 96-151 (333)
180 2qks_A KIR3.1-prokaryotic KIR 99.2 1.4E-10 4.7E-15 114.8 11.5 56 106-161 78-133 (321)
181 3pjs_K KCSA, voltage-gated pot 99.2 1.9E-12 6.6E-17 116.2 -1.6 56 106-161 67-122 (166)
182 3um7_A Potassium channel subfa 99.1 4.6E-10 1.6E-14 109.4 10.0 56 106-161 115-170 (309)
183 3sya_A G protein-activated inw 99.0 1.7E-09 5.9E-14 106.7 13.0 99 50-161 46-148 (340)
184 3rvy_A ION transport protein; 99.0 5.2E-10 1.8E-14 110.9 6.9 122 16-161 113-241 (285)
185 4gx0_A TRKA domain protein; me 99.0 2.2E-09 7.4E-14 117.5 11.9 87 48-159 18-105 (565)
186 3um7_A Potassium channel subfa 99.0 1.5E-09 5.1E-14 105.9 9.3 55 107-161 225-285 (309)
187 3spc_A Inward-rectifier K+ cha 98.9 7.2E-09 2.5E-13 102.4 11.4 99 50-161 48-151 (343)
188 3ukm_A Potassium channel subfa 98.8 5E-09 1.7E-13 100.5 7.9 56 106-161 93-148 (280)
189 3ukm_A Potassium channel subfa 98.8 1.4E-08 4.7E-13 97.5 10.8 55 107-161 202-263 (280)
190 1lnq_A MTHK channels, potassiu 98.5 6.9E-09 2.4E-13 105.6 -1.8 55 107-161 46-100 (336)
191 4dxw_A Navrh, ION transport pr 97.7 0.00017 6E-09 68.3 10.6 57 105-161 164-225 (229)
192 3kg2_A Glutamate receptor 2; I 89.5 0.44 1.5E-05 54.1 6.9 55 106-161 563-617 (823)
193 2kyh_A KVAP, voltage-gated pot 84.3 0.78 2.7E-05 39.3 3.8 34 1-34 94-127 (147)
194 1ors_C Potassium channel; volt 81.2 1.5 5.2E-05 36.7 4.4 26 14-39 92-117 (132)
195 2r9r_B Paddle chimera voltage 75.5 1.6 5.5E-05 46.1 3.5 23 16-38 305-327 (514)
196 3rvy_A ION transport protein; 71.6 4.1 0.00014 39.2 5.1 19 12-30 112-130 (285)
197 2kyh_A KVAP, voltage-gated pot 68.4 3.9 0.00013 34.9 3.6 25 16-40 106-130 (147)
198 2a9h_A Voltage-gated potassium 66.9 17 0.00059 31.1 7.5 17 57-73 59-75 (155)
199 4g26_A Pentatricopeptide repea 65.0 16 0.00056 38.3 8.5 140 381-527 30-195 (501)
200 1orq_C Potassium channel; volt 63.1 10 0.00035 34.8 5.8 20 10-29 96-115 (223)
201 3fjs_A Uncharacterized protein 57.5 41 0.0014 26.7 7.8 66 251-327 38-103 (114)
202 2dnf_A Doublecortin domain-con 57.2 13 0.00045 29.6 4.6 47 613-660 39-87 (108)
203 4g26_A Pentatricopeptide repea 56.2 30 0.001 36.2 8.6 108 393-504 90-209 (501)
204 2ozj_A Cupin 2, conserved barr 53.8 32 0.0011 27.2 6.7 64 255-329 44-107 (114)
205 3rns_A Cupin 2 conserved barre 53.3 43 0.0015 30.6 8.3 68 251-329 39-106 (227)
206 4dxw_A Navrh, ION transport pr 48.8 14 0.00046 34.1 4.0 51 19-69 101-152 (229)
207 1ors_C Potassium channel; volt 46.9 22 0.00074 29.5 4.6 23 15-37 90-112 (132)
208 3lwc_A Uncharacterized protein 43.2 35 0.0012 27.5 5.2 43 254-303 45-87 (119)
209 1yhf_A Hypothetical protein SP 42.3 88 0.003 24.4 7.6 68 251-329 42-109 (115)
210 3es1_A Cupin 2, conserved barr 42.2 30 0.001 30.2 4.8 68 253-329 83-150 (172)
211 1dgw_A Canavalin; duplicated s 39.8 29 0.00099 30.4 4.5 52 251-304 43-94 (178)
212 2xp1_A SPT6; transcription, IW 39.3 99 0.0034 27.0 7.7 88 230-355 11-101 (178)
213 4e2g_A Cupin 2 conserved barre 38.1 1.2E+02 0.004 24.2 7.8 78 251-339 43-124 (126)
214 1zvf_A 3-hydroxyanthranilate 3 36.3 47 0.0016 28.7 5.0 59 267-331 52-113 (176)
215 2eel_A Cell death activator CI 34.8 23 0.00078 27.0 2.5 49 612-660 26-79 (91)
216 1v70_A Probable antibiotics sy 34.6 92 0.0032 23.5 6.4 69 252-329 31-100 (105)
217 2pfw_A Cupin 2, conserved barr 34.5 1.1E+02 0.0037 23.9 7.0 68 251-329 36-103 (116)
218 3c3v_A Arachin ARAH3 isoform; 34.4 48 0.0017 34.5 5.7 60 244-303 367-427 (510)
219 3beh_A MLL3241 protein; transm 34.4 79 0.0027 31.1 7.3 36 2-37 85-121 (355)
220 1ibx_B Chimera of IGG binding 33.8 34 0.0012 28.4 3.5 49 612-660 80-135 (145)
221 1fxz_A Glycinin G1; proglycini 33.5 54 0.0018 33.9 5.9 55 249-303 338-393 (476)
222 1o5u_A Novel thermotoga mariti 33.2 90 0.0031 24.2 5.9 45 252-303 34-78 (101)
223 2gu9_A Tetracenomycin polyketi 33.0 92 0.0032 24.0 6.3 46 252-303 24-72 (113)
224 1f2r_I Inhibitor of caspase-ac 32.6 46 0.0016 25.8 3.8 50 611-660 34-90 (100)
225 1yfu_A 3-hydroxyanthranilate-3 32.4 52 0.0018 28.5 4.6 35 268-304 54-88 (174)
226 3ibm_A Cupin 2, conserved barr 32.0 93 0.0032 26.7 6.4 69 252-329 59-128 (167)
227 2d5f_A Glycinin A3B4 subunit; 30.6 58 0.002 33.8 5.6 60 244-303 362-422 (493)
228 3fz3_A Prunin; TREE NUT allerg 30.2 62 0.0021 33.7 5.6 61 243-303 388-449 (531)
229 3d0j_A Uncharacterized protein 30.1 62 0.0021 26.9 4.5 64 263-331 44-109 (140)
230 4b8b_A General negative regula 29.5 4.3E+02 0.015 27.8 11.6 68 183-250 442-515 (603)
231 3es4_A Uncharacterized protein 29.1 60 0.0021 26.1 4.2 44 255-304 48-91 (116)
232 1o4t_A Putative oxalate decarb 27.9 70 0.0024 26.1 4.8 46 252-303 60-106 (133)
233 1fi2_A Oxalate oxidase, germin 27.6 1E+02 0.0036 27.3 6.2 53 251-303 74-129 (201)
234 3i7d_A Sugar phosphate isomera 26.6 89 0.0031 26.7 5.4 45 253-303 47-93 (163)
235 1vj2_A Novel manganese-contain 25.9 1.1E+02 0.0039 24.4 5.7 68 253-329 52-119 (126)
236 2i45_A Hypothetical protein; n 25.7 65 0.0022 24.9 4.0 68 256-334 35-103 (107)
237 3h8u_A Uncharacterized conserv 25.5 1.5E+02 0.0053 23.4 6.5 70 251-328 41-111 (125)
238 3rns_A Cupin 2 conserved barre 25.4 1.3E+02 0.0046 27.2 6.7 67 251-328 155-222 (227)
239 2vqa_A SLL1358 protein, MNCA; 25.2 90 0.0031 30.7 5.8 51 252-303 55-106 (361)
240 2oa2_A BH2720 protein; 1017534 25.2 1.5E+02 0.0052 24.5 6.5 51 253-303 47-98 (148)
241 3pjz_A Potassium uptake protei 24.6 1.4E+02 0.0047 31.0 7.1 44 104-147 304-349 (494)
242 3bcw_A Uncharacterized protein 24.6 56 0.0019 26.5 3.4 44 255-304 55-98 (123)
243 4i4a_A Similar to unknown prot 24.5 2.2E+02 0.0074 22.5 7.2 79 254-341 39-119 (128)
244 2qnk_A 3-hydroxyanthranilate 3 24.0 74 0.0025 29.9 4.4 63 261-331 44-106 (286)
245 3jzv_A Uncharacterized protein 23.9 69 0.0024 27.6 4.0 44 254-303 58-101 (166)
246 2pyt_A Ethanolamine utilizatio 23.6 1.5E+02 0.0051 24.3 5.9 43 254-304 62-104 (133)
247 1j58_A YVRK protein; cupin, de 23.5 1.5E+02 0.005 29.5 7.1 75 251-329 259-334 (385)
248 2bnm_A Epoxidase; oxidoreducta 23.5 1.3E+02 0.0045 26.3 6.1 70 255-329 123-196 (198)
249 2cav_A Protein (canavalin); vi 23.3 68 0.0023 32.8 4.4 53 250-304 87-139 (445)
250 3zrh_A Ubiquitin thioesterase 23.0 1.9E+02 0.0064 28.8 7.1 56 379-434 21-90 (454)
251 2fqp_A Hypothetical protein BP 22.7 53 0.0018 25.0 2.8 48 253-304 22-70 (97)
252 1j58_A YVRK protein; cupin, de 22.7 86 0.0029 31.3 5.1 52 251-303 81-132 (385)
253 3kgz_A Cupin 2 conserved barre 22.6 81 0.0028 26.8 4.2 65 255-328 50-114 (156)
254 2vpv_A Protein MIF2, MIF2P; nu 22.1 97 0.0033 26.7 4.5 52 269-329 110-161 (166)
255 3or8_A Transcription elongatio 21.8 2.1E+02 0.0071 25.4 6.7 96 231-355 6-105 (197)
256 2vqa_A SLL1358 protein, MNCA; 21.3 1.3E+02 0.0046 29.4 6.2 53 251-304 236-289 (361)
257 1gp8_A Protein (scaffolding pr 21.2 67 0.0023 19.8 2.3 22 380-401 13-34 (40)
258 3kgl_A Cruciferin; 11S SEED gl 21.2 1E+02 0.0034 31.7 5.1 61 243-303 317-378 (466)
259 1sfn_A Conserved hypothetical 21.0 1.7E+02 0.0058 26.9 6.5 70 250-328 166-236 (246)
260 1d4b_A CIDE B, human cell deat 20.8 22 0.00075 28.7 0.2 50 610-659 50-103 (122)
261 3l2h_A Putative sugar phosphat 20.4 1.2E+02 0.0039 25.7 4.8 46 252-303 49-96 (162)
262 4axo_A EUTQ, ethanolamine util 20.2 1.6E+02 0.0055 24.8 5.5 50 269-329 84-133 (151)
No 1
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=5.4e-37 Score=304.02 Aligned_cols=206 Identities=26% Similarity=0.274 Sum_probs=196.8
Q ss_pred hhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCC
Q 006072 379 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458 (662)
Q Consensus 379 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 458 (662)
.|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCccc-ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCC
Q 006072 459 DGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF 537 (662)
Q Consensus 459 ~~~v~~Ll~~g~~~~~~-~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 537 (662)
.+++++|+++|++++.. ++.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 161 (261)
T 2xai_A 82 WDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161 (261)
T ss_dssp HHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 99999999999998764 48899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCccccccCC
Q 006072 538 PKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRN 585 (662)
Q Consensus 538 ~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 585 (662)
. |..|.||||+|+..|+.+++++|+++|+++..++..|.++...+..
T Consensus 162 ~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~ 208 (261)
T 2xai_A 162 Q-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPP 208 (261)
T ss_dssp C-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred C-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccc
Confidence 5 8899999999999999999999999999999999999998876653
No 2
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.8e-37 Score=309.88 Aligned_cols=213 Identities=22% Similarity=0.214 Sum_probs=189.6
Q ss_pred chhhhhhhhhHhHHhccCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHH
Q 006072 374 SKHEAELALKVNSAAYHGDLYQLEGLIRAGAD---PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL 450 (662)
Q Consensus 374 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 450 (662)
+..+..|.||||.||..|+.+++++|++.|++ ++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 45678899999999999999999999999988 788999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCCCC-----------------------------------------------cc--cccchHH
Q 006072 451 LEAIKYGNDGAASLLVKEGASL-----------------------------------------------NV--EEAGSFL 481 (662)
Q Consensus 451 ~~A~~~~~~~~v~~Ll~~g~~~-----------------------------------------------~~--~~~~~~l 481 (662)
|+|+..|+.+++++|+++|++. +. ..|.|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence 9999999999999999988652 22 3578999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHH
Q 006072 482 CTAVARGDSDLLKRVLSNGIDPNTRDY-DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK 560 (662)
Q Consensus 482 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~ 560 (662)
|.|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus 163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~ 242 (282)
T 1oy3_D 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence 999999999999999999999999985 4999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccCCCCCccccccCCC
Q 006072 561 LLEDAKSTQLLEFPHGFQDTADKRNP 586 (662)
Q Consensus 561 ~Ll~~ga~~~~~~~~~~~~~~~~~~~ 586 (662)
+|+++|+++..++..|.++.......
T Consensus 243 ~Ll~~ga~~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 243 LLRAHGAPEPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp HHHHTTCCCCCCC-------------
T ss_pred HHHHcCCCcCcCCCcccccccccCCc
Confidence 99999999999999998877654433
No 3
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=304.83 Aligned_cols=211 Identities=25% Similarity=0.268 Sum_probs=201.5
Q ss_pred cchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHH
Q 006072 373 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE 452 (662)
Q Consensus 373 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 452 (662)
....+..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~ 131 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN 131 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCCccc-ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHH
Q 006072 453 AIKYGNDGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 531 (662)
Q Consensus 453 A~~~~~~~~v~~Ll~~g~~~~~~-~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 531 (662)
|+..|+.+++++|++.|++++.. +|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 132 A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 211 (285)
T 3d9h_A 132 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998754 48899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCccccccC
Q 006072 532 AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR 584 (662)
Q Consensus 532 ~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 584 (662)
+|++++. |..|.||||+|+..|+.+++++|+++|+++..++..|.++...+.
T Consensus 212 ~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 212 SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP 263 (285)
T ss_dssp TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc
Confidence 9999995 889999999999999999999999999999999999988776554
No 4
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.9e-36 Score=294.31 Aligned_cols=214 Identities=25% Similarity=0.261 Sum_probs=202.6
Q ss_pred ccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHH
Q 006072 372 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLL 451 (662)
Q Consensus 372 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 451 (662)
+++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 45567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcC-CCCccc--ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHH
Q 006072 452 EAIKYGNDGAASLLVKEG-ASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKL 528 (662)
Q Consensus 452 ~A~~~~~~~~v~~Ll~~g-~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 528 (662)
+|+..|+.+++++|++.| .+++.. .|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence 999999999999999998 676654 48899999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCccccccCC
Q 006072 529 LVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRN 585 (662)
Q Consensus 529 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 585 (662)
|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++..++..|.++...+..
T Consensus 163 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 219 (237)
T 3b7b_A 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219 (237)
T ss_dssp HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCT
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887765443
No 5
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=7.8e-37 Score=301.46 Aligned_cols=209 Identities=23% Similarity=0.247 Sum_probs=129.2
Q ss_pred cchhhhhhhhhHhHHhccC-------------CHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 006072 373 ISKHEAELALKVNSAAYHG-------------DLYQLEGLIRAGADPNR-TDYDGRSPLHLAASRGYEEIMTFLIQKGVD 438 (662)
Q Consensus 373 ~~~~~~~~~~~L~~A~~~g-------------~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 438 (662)
++..+..|.||||.|+..| +.++++.|++.|++++. .|..|.||||+|+..|+.+++++|+++|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4556667777777777766 77777777777777644 467777777777777777777777777777
Q ss_pred CcccCCCCCcHHHHHHHhCCHHHHHHHHHcCC-CCccc--ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 006072 439 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGA-SLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH 515 (662)
Q Consensus 439 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 515 (662)
++..|..|.||||+|+..|+.+++++|++.|+ +++.. .|.||||.|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~ 162 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162 (253)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 77777777777777777777777777777765 55443 4667777777777777777777777777777777777777
Q ss_pred HHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCcccc
Q 006072 516 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTA 581 (662)
Q Consensus 516 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~ 581 (662)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++...+..|.++..
T Consensus 163 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 228 (253)
T 1yyh_A 163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 228 (253)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHH
Confidence 777777777777777777777777777777777777777777777777777777777766666544
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=4.7e-36 Score=311.02 Aligned_cols=239 Identities=25% Similarity=0.299 Sum_probs=215.5
Q ss_pred hcHHHHHHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 006072 343 CDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAAS 422 (662)
Q Consensus 343 ~~~~~il~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 422 (662)
..+...+..+...++...+...+.. ....++..+..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Confidence 3445556666666666655555543 344566678889999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcc----------------------------
Q 006072 423 RGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV---------------------------- 474 (662)
Q Consensus 423 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---------------------------- 474 (662)
.|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 101 ~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~ 180 (351)
T 3utm_A 101 YGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180 (351)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999998764
Q ss_pred ----------------------------cccchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcH
Q 006072 475 ----------------------------EEAGSFLCTAVAR---GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY 523 (662)
Q Consensus 475 ----------------------------~~~~~~l~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 523 (662)
..+.||||.|+.. +..+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 260 (351)
T 3utm_A 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN 260 (351)
T ss_dssp HHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCH
Confidence 2357999999999 558999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCccccc
Q 006072 524 LMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTAD 582 (662)
Q Consensus 524 ~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~ 582 (662)
+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++...+..|.++...
T Consensus 261 ~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~ 319 (351)
T 3utm_A 261 DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM 319 (351)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhh
Confidence 99999999999999999999999999999999999999999999999999888776543
No 7
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=7e-36 Score=292.37 Aligned_cols=211 Identities=21% Similarity=0.242 Sum_probs=196.2
Q ss_pred chhhhhhhhhHhHHhccCCHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcH
Q 006072 374 SKHEAELALKVNSAAYHGDLYQLEGLIR----AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTP 449 (662)
Q Consensus 374 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 449 (662)
+..|..|.||||.||..|+.+++++|++ .|.+++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 4678889999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCC----CCccc--ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHhCc
Q 006072 450 LLEAIKYGNDGAASLLVKEGA----SLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGL 522 (662)
Q Consensus 450 L~~A~~~~~~~~v~~Ll~~g~----~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~ 522 (662)
||+|+..|+.+++++|++.++ +++.. .|.||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 999999999999999999987 55543 58899999999999999999999999999998 889999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCccccccC
Q 006072 523 YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR 584 (662)
Q Consensus 523 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 584 (662)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++..++..|.++...+.
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 224 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888877765443
No 8
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=298.73 Aligned_cols=210 Identities=23% Similarity=0.245 Sum_probs=168.7
Q ss_pred hhhhhhhhhHhHHhccCCHHHHHHHHHcCCC--------CCCCCCCCCcHHHHHHHcCcH-HHHHHHHhcCCCCcccCCC
Q 006072 375 KHEAELALKVNSAAYHGDLYQLEGLIRAGAD--------PNRTDYDGRSPLHLAASRGYE-EIMTFLIQKGVDINLKDNF 445 (662)
Q Consensus 375 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~~~~~~~~ 445 (662)
.+|..+.++|+.||..|++++|++|++.|++ ++..+..|.||||.|+..++. .++++|++.|+++|.+|.+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 3455678999999999999999999998875 456678899999999988776 4889999999999999999
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCccc--ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcH
Q 006072 446 GNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY 523 (662)
Q Consensus 446 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 523 (662)
|.||||+|+..|+.+++++|++.|++++.. +|.||++.|+..++.+++++|+++|+++|.+|..|.||||+||..|+.
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~ 165 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH 165 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 999999999999999999999999998875 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCccccccC
Q 006072 524 LMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR 584 (662)
Q Consensus 524 ~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 584 (662)
+++++|+++|+|+|.+|..|.||||+|+..|+.+++++|+++|+++..++..|.++...+.
T Consensus 166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~ 226 (269)
T 4b93_B 166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAE 226 (269)
T ss_dssp GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSC
T ss_pred HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988776553
No 9
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.7e-36 Score=291.65 Aligned_cols=196 Identities=29% Similarity=0.382 Sum_probs=167.1
Q ss_pred cchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHH
Q 006072 373 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE 452 (662)
Q Consensus 373 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 452 (662)
.+..+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 112 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHY 112 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 34556777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhCCHHHHHHHHHcCCCCcccc--cchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHH
Q 006072 453 AIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV 530 (662)
Q Consensus 453 A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 530 (662)
|+..|+.+++++|+++|++++..+ |.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus 113 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 192 (231)
T 3aji_A 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192 (231)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 888888888888888888877654 778888888888888888888888888888888888888888888888888888
Q ss_pred HCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhcccc
Q 006072 531 EAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 568 (662)
Q Consensus 531 ~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~ 568 (662)
++|++++.+|..|.||+|+|+..++.+++++|+++|++
T Consensus 193 ~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 193 TQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 88888888888888888888888888888888888775
No 10
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=6.8e-36 Score=290.74 Aligned_cols=196 Identities=20% Similarity=0.210 Sum_probs=182.8
Q ss_pred hhhhhHhHHhccCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCC-----cccCCCCCcHHHH
Q 006072 379 ELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI-----NLKDNFGNTPLLE 452 (662)
Q Consensus 379 ~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~~~~~~g~t~L~~ 452 (662)
.|.||||.|+..|+.++++.|++. |++++.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 478999999999999999999998 9999999999999999999999999999999999987 6677899999999
Q ss_pred HHHhCCHHHHHHHHHcCCCCccc---------------ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 006072 453 AIKYGNDGAASLLVKEGASLNVE---------------EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVA 517 (662)
Q Consensus 453 A~~~~~~~~v~~Ll~~g~~~~~~---------------~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 517 (662)
|+..|+.+++++|+++|++++.. .|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 99999999999999999998875 488999999999999999999999999999999999999999
Q ss_pred HHhCcHHHH----HHHHHCCCCC------CCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCC
Q 006072 518 ASEGLYLMA----KLLVEAGASV------FPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFP 574 (662)
Q Consensus 518 ~~~~~~~~v----~~Ll~~ga~~------~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~ 574 (662)
+..|+.+++ ++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++......
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 228 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHH 228 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhhhc
Confidence 999999988 9999999998 58999999999999999999999999999988765543
No 11
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.8e-35 Score=282.84 Aligned_cols=195 Identities=27% Similarity=0.326 Sum_probs=188.1
Q ss_pred hhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCC-CCcccCCCCCcHHHHHH
Q 006072 376 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV-DINLKDNFGNTPLLEAI 454 (662)
Q Consensus 376 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~ 454 (662)
.+..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++++ +++..+..|.||||+|+
T Consensus 21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 100 (223)
T 2f8y_A 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 100 (223)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred HhCCHHHHHHHHHcCCCCcccc--cchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHC
Q 006072 455 KYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA 532 (662)
Q Consensus 455 ~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 532 (662)
..|+.+++++|+++|++++..+ |.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 101 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 180 (223)
T 2f8y_A 101 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180 (223)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999988765 88999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhcccccc
Q 006072 533 GASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL 570 (662)
Q Consensus 533 ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~ 570 (662)
|++++.+|..|.||+++|+..++.+++++|+++|+...
T Consensus 181 ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999998754
No 12
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.9e-35 Score=284.52 Aligned_cols=206 Identities=26% Similarity=0.284 Sum_probs=192.0
Q ss_pred hhhhHhHHhccCCHHHHHHHHHcCCCCC-CCCCCCCcHHHHHHHcCcHHHHHHHHhcC--CCCcc-cCCCCCcHHHHHHH
Q 006072 380 LALKVNSAAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKG--VDINL-KDNFGNTPLLEAIK 455 (662)
Q Consensus 380 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~-~~~~g~t~L~~A~~ 455 (662)
|.||||.|+..|+.++++.|++.|.++. ..|..|.||||+|+..|+.+++++|+++| ++++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 5799999999999999999999998865 48999999999999999999999999999 56666 78899999999999
Q ss_pred hCCHHHHHHHHHcC--CCCccc--ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHH
Q 006072 456 YGNDGAASLLVKEG--ASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 531 (662)
Q Consensus 456 ~~~~~~v~~Ll~~g--~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 531 (662)
.|+.+++++|+++| ++++.. .|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999998 776654 48899999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCCCCCCCChHHHHHHcCCHHHHHHHH-hccccccccCCCCCccccccCC
Q 006072 532 AG-ASVFPKDRWGNTPLDEGRMCGNKNLIKLLE-DAKSTQLLEFPHGFQDTADKRN 585 (662)
Q Consensus 532 ~g-a~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll-~~ga~~~~~~~~~~~~~~~~~~ 585 (662)
+| ++++.+|..|+||||+|+..|+.+++++|+ ++|+++...+..|.++...+..
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence 99 999999999999999999999999999999 9999999999999888765543
No 13
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.9e-35 Score=289.27 Aligned_cols=194 Identities=27% Similarity=0.326 Sum_probs=184.1
Q ss_pred hhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCC-CCcccCCCCCcHHHHH
Q 006072 375 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV-DINLKDNFGNTPLLEA 453 (662)
Q Consensus 375 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A 453 (662)
..+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|
T Consensus 52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 131 (253)
T 1yyh_A 52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131 (253)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHH
Confidence 346788999999999999999999999999999999999999999999999999999999987 8999999999999999
Q ss_pred HHhCCHHHHHHHHHcCCCCcccc--cchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHH
Q 006072 454 IKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 531 (662)
Q Consensus 454 ~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 531 (662)
+..|+.+++++|++.|++++..+ |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 132 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 211 (253)
T 1yyh_A 132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211 (253)
T ss_dssp HHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999998765 8899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhcccc
Q 006072 532 AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 568 (662)
Q Consensus 532 ~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~ 568 (662)
+|++++.+|..|.||+|+|+.+|+.+++++|.+....
T Consensus 212 ~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred cCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999877544
No 14
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.4e-35 Score=284.14 Aligned_cols=204 Identities=30% Similarity=0.343 Sum_probs=193.4
Q ss_pred hhhhhHhHHhccCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhC
Q 006072 379 ELALKVNSAAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 457 (662)
Q Consensus 379 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 457 (662)
.+.+|||.|+..|+.+.++.+++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 356899999999999999999988654 6788999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCcccc--cchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCC
Q 006072 458 NDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535 (662)
Q Consensus 458 ~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 535 (662)
+.+++++|+++|++++..+ |.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 164 (231)
T 3aji_A 85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164 (231)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence 9999999999999998754 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCccccc
Q 006072 536 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTAD 582 (662)
Q Consensus 536 ~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~ 582 (662)
++.+|..|.||||+|+..|+.+++++|+++|+++..++..|.++...
T Consensus 165 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 211 (231)
T 3aji_A 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211 (231)
T ss_dssp SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999888888776553
No 15
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=3.6e-36 Score=293.51 Aligned_cols=204 Identities=23% Similarity=0.195 Sum_probs=184.7
Q ss_pred hhhhhhhhhHhHHhccCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHH
Q 006072 375 KHEAELALKVNSAAYHGDLYQLEGLIRAGA----DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL 450 (662)
Q Consensus 375 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 450 (662)
..+..|.||||.|+..|+.++++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 356788999999999999999999998765 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCCCCc--------ccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHhC
Q 006072 451 LEAIKYGNDGAASLLVKEGASLN--------VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDY-DLRTPLHVAASEG 521 (662)
Q Consensus 451 ~~A~~~~~~~~v~~Ll~~g~~~~--------~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~ 521 (662)
|+|+..|+.+++++|++.|++++ ...|.||||.|+..|+.+++++|+++|++++.++. .|.||||+|+..|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~ 162 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence 99999999999999999997632 23588999999999999999999999999999997 9999999999999
Q ss_pred cHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhcccccc--ccCCCCCc
Q 006072 522 LYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL--LEFPHGFQ 578 (662)
Q Consensus 522 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~--~~~~~~~~ 578 (662)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++. .+...+.+
T Consensus 163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~ 221 (236)
T 1ikn_D 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEE 221 (236)
T ss_dssp CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTT
T ss_pred CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHH
Confidence 9999999999999999999999999999999999999999999999987 44444433
No 16
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.8e-34 Score=288.30 Aligned_cols=236 Identities=26% Similarity=0.316 Sum_probs=208.7
Q ss_pred HHHHHHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 006072 345 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG 424 (662)
Q Consensus 345 ~~~il~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 424 (662)
+...+..++..++...+...++.....+.. .+..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 345556666666666666666655443322 2567889999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccc------------ccchHHHHHHHcCCHHH
Q 006072 425 YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE------------EAGSFLCTAVARGDSDL 492 (662)
Q Consensus 425 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~------------~~~~~l~~A~~~~~~~~ 492 (662)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. .|.||||.|+..|+.++
T Consensus 84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 163 (285)
T 1wdy_A 84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163 (285)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999988753 47799999999999999
Q ss_pred HHHHHHc-CCCCCCCCCCCCcHHHHHHHhCc----HHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHh-cc
Q 006072 493 LKRVLSN-GIDPNTRDYDLRTPLHVAASEGL----YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED-AK 566 (662)
Q Consensus 493 v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~-~g 566 (662)
+++|++. |++++..|..|.||||+|+..++ .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|
T Consensus 164 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g 243 (285)
T 1wdy_A 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243 (285)
T ss_dssp HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred HHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccC
Confidence 9999987 99999999999999999999998 899999999999999999999999999999999999999999 89
Q ss_pred ccccccCCCCCcccc
Q 006072 567 STQLLEFPHGFQDTA 581 (662)
Q Consensus 567 a~~~~~~~~~~~~~~ 581 (662)
+++...+..|.++..
T Consensus 244 ~~~~~~~~~g~t~l~ 258 (285)
T 1wdy_A 244 IEINDTDSDGKTALL 258 (285)
T ss_dssp CCTTCCCTTSCCHHH
T ss_pred CCccccCCCCCcHHH
Confidence 999888888777654
No 17
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=293.01 Aligned_cols=197 Identities=23% Similarity=0.310 Sum_probs=153.1
Q ss_pred ccchhhhhhhhhHhHHhccCCHH-HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHH
Q 006072 372 HISKHEAELALKVNSAAYHGDLY-QLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL 450 (662)
Q Consensus 372 ~~~~~~~~~~~~L~~A~~~g~~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 450 (662)
.++..+..+.+||+.|+..++.+ +++.|++.|+++|.+|.+|+||||+|+..|+.+++++|++.|++++..+..|.||+
T Consensus 44 ~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l 123 (269)
T 4b93_B 44 TVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPL 123 (269)
T ss_dssp -------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred cccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcc
Confidence 34566778899999999988764 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCCCCcccc--cchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHH
Q 006072 451 LEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKL 528 (662)
Q Consensus 451 ~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 528 (662)
|+|+..++.+++++|++.|++++..+ |.||||+|+..|+.+++++|+++|+++|.++..|.||||+|+..|+.++|++
T Consensus 124 ~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~ 203 (269)
T 4b93_B 124 HLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL 203 (269)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred ccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHH
Confidence 99999999999999999999998764 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCCCCCCCCChHHHHHHcCC-HHHHHHHHhcccc
Q 006072 529 LVEAGASVFPKDRWGNTPLDEGRMCGN-KNLIKLLEDAKST 568 (662)
Q Consensus 529 Ll~~ga~~~~~d~~g~tpl~~A~~~~~-~~iv~~Ll~~ga~ 568 (662)
|+++|||++.+|.+|+||||+|+.+++ .+++++|.+.++.
T Consensus 204 Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~ 244 (269)
T 4b93_B 204 LLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS 244 (269)
T ss_dssp HHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence 999999999999999999999998775 3444555555443
No 18
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.9e-35 Score=287.98 Aligned_cols=223 Identities=20% Similarity=0.226 Sum_probs=194.9
Q ss_pred HHHHHHHHhcCCcchhhhhhhcC--ccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 006072 345 GRKVLTNLLQGKESDLRLKQLQS--DITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAAS 422 (662)
Q Consensus 345 ~~~il~~l~~~~~~~~~~~~l~~--d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 422 (662)
+...+..++..++.......++. +....++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+.
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 34445555555555444444431 1223445567789999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhcCC----CCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccc---cchHHHHHHHcCCHHHHHH
Q 006072 423 RGYEEIMTFLIQKGV----DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE---AGSFLCTAVARGDSDLLKR 495 (662)
Q Consensus 423 ~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---~~~~l~~A~~~~~~~~v~~ 495 (662)
.|+.+++++|++.++ +++..+..|.||||+|+..|+.+++++|++.|++++..+ |.||||.|+..|+.+++++
T Consensus 89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 168 (241)
T 1k1a_A 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168 (241)
T ss_dssp TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHH
Confidence 999999999999987 889999999999999999999999999999999998754 8899999999999999999
Q ss_pred HHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccc
Q 006072 496 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 567 (662)
Q Consensus 496 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga 567 (662)
|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.++
T Consensus 169 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998775
No 19
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=3e-34 Score=272.42 Aligned_cols=188 Identities=26% Similarity=0.313 Sum_probs=178.9
Q ss_pred hhhhhHhHHhccCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhC
Q 006072 379 ELALKVNSAAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 457 (662)
Q Consensus 379 ~~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 457 (662)
.+.+|||.|+..|+.+.++.|+..+. +++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 45789999999999999999999876 99999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHH-HcCCCCccc--ccchHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHhCc-----HHHHHH
Q 006072 458 NDGAASLLV-KEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNG-IDPNTRDYDLRTPLHVAASEGL-----YLMAKL 528 (662)
Q Consensus 458 ~~~~v~~Ll-~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~ 528 (662)
+.+++++|+ ..+++++.. .|.||||.|+..|+.+++++|+++| ++++.+|..|.||||+|+..++ .+++++
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 999999999 556677665 4789999999999999999999999 9999999999999999999987 999999
Q ss_pred HHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhcc
Q 006072 529 LVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK 566 (662)
Q Consensus 529 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g 566 (662)
|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999999999999999987
No 20
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=3.4e-35 Score=294.71 Aligned_cols=198 Identities=21% Similarity=0.149 Sum_probs=186.3
Q ss_pred cchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHH
Q 006072 373 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE 452 (662)
Q Consensus 373 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 452 (662)
++..+..|.||||.|+..|+.+++++|++.|++++.. +|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 101 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY 101 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence 4567788999999999999999999999999999988 49999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCCcccc--c-chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHH
Q 006072 453 AIKYGNDGAASLLVKEGASLNVEE--A-GSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLL 529 (662)
Q Consensus 453 A~~~~~~~~v~~Ll~~g~~~~~~~--~-~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 529 (662)
|+..|+.+++++|+++|++++..+ | .||||.|+..|+.+++++|+++|+++... ..|.||||+|+..|+.+++++|
T Consensus 102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHH
Confidence 999999999999999999998765 5 79999999999999999999999887433 2899999999999999999999
Q ss_pred HHCCCCCCCCCCCCCCh-HHHHHHcCCHHHHHHHHhccccccccC
Q 006072 530 VEAGASVFPKDRWGNTP-LDEGRMCGNKNLIKLLEDAKSTQLLEF 573 (662)
Q Consensus 530 l~~ga~~~~~d~~g~tp-l~~A~~~~~~~iv~~Ll~~ga~~~~~~ 573 (662)
+++|++++.+|..|+|| ||+|+..|+.+++++|+++|+++...+
T Consensus 181 l~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred HHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 99999999999999998 999999999999999999999987765
No 21
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.4e-34 Score=262.29 Aligned_cols=159 Identities=43% Similarity=0.607 Sum_probs=133.8
Q ss_pred hhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHH
Q 006072 381 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDG 460 (662)
Q Consensus 381 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 460 (662)
.++|+.||..|+.++|+.|++.|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 35788899999999999999999999998889999999999999999999999999999888888888888888777766
Q ss_pred HHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCC
Q 006072 461 AASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD 540 (662)
Q Consensus 461 ~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d 540 (662)
++++|+++ |+++|.+|.+|+||||+|+..|+.+++++|+++|+|++.+|
T Consensus 85 ~v~~Ll~~-------------------------------gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 133 (169)
T 4gpm_A 85 VVKLLISK-------------------------------GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133 (169)
T ss_dssp HHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHC-------------------------------cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 66666555 45677888889999999999999999999999999999999
Q ss_pred CCCCChHHHHHHcCCHHHHHHHHhcccccc
Q 006072 541 RWGNTPLDEGRMCGNKNLIKLLEDAKSTQL 570 (662)
Q Consensus 541 ~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~ 570 (662)
.+|+||||+|+..|+.+++++|+++||+..
T Consensus 134 ~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 134 SDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 999999999999999999999999998764
No 22
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-34 Score=292.99 Aligned_cols=208 Identities=27% Similarity=0.301 Sum_probs=191.7
Q ss_pred hhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHH
Q 006072 376 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 455 (662)
Q Consensus 376 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 455 (662)
.+..+.|+||.||..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~ 115 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS 115 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHcCCCCccc--ccchHHHHHHHcCCHHHHHHHHHc-CCCC--------------------------CCC
Q 006072 456 YGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSN-GIDP--------------------------NTR 506 (662)
Q Consensus 456 ~~~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~-g~~~--------------------------~~~ 506 (662)
.|+.+++++|+++|++++.. .|.||||.|+..++.++++.++.. |.++ ...
T Consensus 116 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 195 (299)
T 1s70_B 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH 195 (299)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhh
Confidence 99999999999999998875 488999999999999999877753 4433 335
Q ss_pred CCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCcccccc
Q 006072 507 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK 583 (662)
Q Consensus 507 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 583 (662)
+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++...+..|.++...+
T Consensus 196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A 272 (299)
T 1s70_B 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272 (299)
T ss_dssp TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred cCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999988887766544
No 23
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-33 Score=283.84 Aligned_cols=225 Identities=24% Similarity=0.254 Sum_probs=203.1
Q ss_pred HHHHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcH
Q 006072 347 KVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE 426 (662)
Q Consensus 347 ~il~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 426 (662)
..+..+...+.......+++...+ ++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus 41 t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 118 (285)
T 1wdy_A 41 TPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 118 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCH
Confidence 445555555555555555554333 344567789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccc----------CCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCccc--ccchHHHHHHHcCC----
Q 006072 427 EIMTFLIQKGVDINLK----------DNFGNTPLLEAIKYGNDGAASLLVKE-GASLNVE--EAGSFLCTAVARGD---- 489 (662)
Q Consensus 427 ~~v~~Ll~~g~~~~~~----------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~--~~~~~l~~A~~~~~---- 489 (662)
+++++|+++|++++.. +..|.||||+|+..|+.+++++|++. |++++.. .|.||||.|+..++
T Consensus 119 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~ 198 (285)
T 1wdy_A 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198 (285)
T ss_dssp HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTH
T ss_pred HHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchH
Confidence 9999999999999887 78899999999999999999999997 9988875 48899999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHH-CCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhcccc
Q 006072 490 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE-AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 568 (662)
Q Consensus 490 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~ 568 (662)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 199 ~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~ 278 (285)
T 1wdy_A 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278 (285)
T ss_dssp HHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred ccccC
Q 006072 569 QLLEF 573 (662)
Q Consensus 569 ~~~~~ 573 (662)
+..++
T Consensus 279 ~~~~d 283 (285)
T 1wdy_A 279 TDCGD 283 (285)
T ss_dssp SCCSS
T ss_pred CCccc
Confidence 87764
No 24
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.9e-35 Score=290.84 Aligned_cols=193 Identities=20% Similarity=0.119 Sum_probs=180.1
Q ss_pred hhhhHhHHhccCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CcHHHHHHHHhcCCCCccc------
Q 006072 380 LALKVNSAAYHGDLY----QLEGLIRAGADPNR----TDYDGRSPLHLAASR---GYEEIMTFLIQKGVDINLK------ 442 (662)
Q Consensus 380 ~~~~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~------ 442 (662)
|.||||.||..|+.+ ++++|++.|++++. .|..|.||||+|+.. |+.+++++|+++|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 579999999999997 66777779999998 899999999999999 9999999999999887643
Q ss_pred -----CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccc---------------cchHHHHHHHcCCHHHHHHHHH---c
Q 006072 443 -----DNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE---------------AGSFLCTAVARGDSDLLKRVLS---N 499 (662)
Q Consensus 443 -----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------------~~~~l~~A~~~~~~~~v~~Ll~---~ 499 (662)
|..|.||||+|+..|+.+++++|+++|++++..+ |.||||.|+..|+.+++++|++ +
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 3679999999999999999999999999998765 8899999999999999999999 9
Q ss_pred CCCCCCCCCCCCcHHHHHHH--hCcHH-------HHHHHHHCCCCC-------CCCCCCCCChHHHHHHcCCHHHHHHHH
Q 006072 500 GIDPNTRDYDLRTPLHVAAS--EGLYL-------MAKLLVEAGASV-------FPKDRWGNTPLDEGRMCGNKNLIKLLE 563 (662)
Q Consensus 500 g~~~~~~~~~g~t~L~~A~~--~~~~~-------~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~~~~~~iv~~Ll 563 (662)
|+++|.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+
T Consensus 162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999 78888 999999999999 999999999999999999999999999
Q ss_pred hcccccccc
Q 006072 564 DAKSTQLLE 572 (662)
Q Consensus 564 ~~ga~~~~~ 572 (662)
++|++....
T Consensus 242 ~~g~~~~~~ 250 (256)
T 2etb_A 242 QREFSGAAA 250 (256)
T ss_dssp HHHHHHHHH
T ss_pred hCCCCCCCc
Confidence 999886544
No 25
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=284.99 Aligned_cols=214 Identities=21% Similarity=0.248 Sum_probs=188.9
Q ss_pred HHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 006072 350 TNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIM 429 (662)
Q Consensus 350 ~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 429 (662)
..+...++.......++... +++..+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++
T Consensus 8 ~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 85 (261)
T 2xai_A 8 HEAAIHGHQLSLRNLISQGW--AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCV 85 (261)
T ss_dssp HHHHHHTCHHHHHHHHHTTC--CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 33444444444444444432 3456677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccc--cchHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 006072 430 TFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 507 (662)
Q Consensus 430 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~ 507 (662)
++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++..+ |.||||.|+..|+.+++++|+++|+++|. +
T Consensus 86 ~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~ 163 (261)
T 2xai_A 86 NLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-G 163 (261)
T ss_dssp HHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-C
T ss_pred HHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-C
Confidence 999999999985 4569999999999999999999999999998754 78999999999999999999999999996 8
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccc
Q 006072 508 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 569 (662)
Q Consensus 508 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~ 569 (662)
..|.||||+|+..|+.+++++|+++|+|++.+|..|+||+|+|+.++ +++++|++.++.+
T Consensus 164 ~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~ 223 (261)
T 2xai_A 164 KGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPP 223 (261)
T ss_dssp BTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCC
T ss_pred CCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCc
Confidence 89999999999999999999999999999999999999999999654 5899999987754
No 26
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.4e-34 Score=299.85 Aligned_cols=227 Identities=18% Similarity=0.136 Sum_probs=170.3
Q ss_pred hcHHHHHHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 006072 343 CDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAAS 422 (662)
Q Consensus 343 ~~~~~il~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 422 (662)
..+...+..+...++...+..+++...+ ++..+..|.||||.|+..|+.+++++|++.|++++. .+|.||||+|+.
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~ 93 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLIETGVS--PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVM 93 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHH
Confidence 3455666666666666666666655433 344556667777777777777777777777775443 357777777777
Q ss_pred cCcHHHHHHHHhc----CCCCcc-----------------cCCCCCcHHHHHHHhC--CHHHHHHHHHcCCCCcccc--c
Q 006072 423 RGYEEIMTFLIQK----GVDINL-----------------KDNFGNTPLLEAIKYG--NDGAASLLVKEGASLNVEE--A 477 (662)
Q Consensus 423 ~~~~~~v~~Ll~~----g~~~~~-----------------~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~--~ 477 (662)
.|+.+++++|+++ |++++. .+..|.||||+|+..| +.+++++|+++|++++..+ |
T Consensus 94 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g 173 (364)
T 3ljn_A 94 ANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD 173 (364)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTS
T ss_pred cCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCC
Confidence 7777777777776 666665 6777888888888888 8888888888888877654 6
Q ss_pred chHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHH
Q 006072 478 GSFLCTAVARGDSDLLKRVLSNGID-----PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRM 552 (662)
Q Consensus 478 ~~~l~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 552 (662)
.||||+|+..|+.+++++|+++|++ +|..|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+.
T Consensus 174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~ 253 (364)
T 3ljn_A 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVR 253 (364)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 7888888888888888888888877 88888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHhccccccccC
Q 006072 553 CGNKNLIKLLEDAKSTQLLEF 573 (662)
Q Consensus 553 ~~~~~iv~~Ll~~ga~~~~~~ 573 (662)
.|+.+++++|+++|++.....
T Consensus 254 ~g~~~~v~~Ll~~~~~~~~~~ 274 (364)
T 3ljn_A 254 AAMVLLTKELLQKTDVFLIQA 274 (364)
T ss_dssp TCCHHHHHHHHHHSCHHHHHT
T ss_pred hChHHHHHHHHHcCCchhhhc
Confidence 888888888888887765443
No 27
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-34 Score=300.16 Aligned_cols=227 Identities=21% Similarity=0.266 Sum_probs=197.0
Q ss_pred hcHHHHHHHHhcCCcchhhhhhhcC------ccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 006072 343 CDGRKVLTNLLQGKESDLRLKQLQS------DITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSP 416 (662)
Q Consensus 343 ~~~~~il~~l~~~~~~~~~~~~l~~------d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 416 (662)
..+...+..+...+....+..++.. +...+++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~ 202 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 202 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence 3455666666666555444333311 1223445667889999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHhcC---CCCcccCCCCCcHHHHHHHhC---CHHHHHHHHHcCCCCcc----------cccchH
Q 006072 417 LHLAASRGYEEIMTFLIQKG---VDINLKDNFGNTPLLEAIKYG---NDGAASLLVKEGASLNV----------EEAGSF 480 (662)
Q Consensus 417 L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g~~~~~----------~~~~~~ 480 (662)
||+|+..|+.+++++|+++| ++++..|..|.||||+|+..+ +.+++++|+++|++++. ..|.||
T Consensus 203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~ 282 (373)
T 2fo1_E 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282 (373)
T ss_dssp HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCH
Confidence 99999999999999999988 899999999999999999988 89999999999999875 257899
Q ss_pred HHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHH
Q 006072 481 LCTAVARGDSDLLKRVLSNG-IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLI 559 (662)
Q Consensus 481 l~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv 559 (662)
||.|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.+|+.+++
T Consensus 283 Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv 362 (373)
T 2fo1_E 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 362 (373)
T ss_dssp HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHH
Confidence 99999999999999999876 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccc
Q 006072 560 KLLEDAKSTQ 569 (662)
Q Consensus 560 ~~Ll~~ga~~ 569 (662)
++|+++|++.
T Consensus 363 ~~Ll~~~a~~ 372 (373)
T 2fo1_E 363 DIFDRCRPER 372 (373)
T ss_dssp HHHHTTC---
T ss_pred HHHHhcCccc
Confidence 9999999874
No 28
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-33 Score=302.64 Aligned_cols=211 Identities=24% Similarity=0.293 Sum_probs=199.7
Q ss_pred cchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHH
Q 006072 373 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE 452 (662)
Q Consensus 373 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 452 (662)
.+..+..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+
T Consensus 172 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 251 (437)
T 1n11_A 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 251 (437)
T ss_dssp TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 34456678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCCccc--ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHH
Q 006072 453 AIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV 530 (662)
Q Consensus 453 A~~~~~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 530 (662)
|+..|+.+++++|+++|++++.. .|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++|++|+
T Consensus 252 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 331 (437)
T 1n11_A 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331 (437)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH
T ss_pred HHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999998765 4789999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCcccccc
Q 006072 531 EAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK 583 (662)
Q Consensus 531 ~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 583 (662)
++|+++|.+|..|+||||+|+..|+.+++++|+++|+++...+..|.++...+
T Consensus 332 ~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A 384 (437)
T 1n11_A 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384 (437)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred hcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999998888776543
No 29
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=8.6e-35 Score=290.39 Aligned_cols=205 Identities=20% Similarity=0.168 Sum_probs=175.5
Q ss_pred cchhhhhhhhhHhHHhccCCHHHHHHHHH----cCCCCC----CCCCCCCcHHHHHHHc---CcHHHHHHHHhcCCCC--
Q 006072 373 ISKHEAELALKVNSAAYHGDLYQLEGLIR----AGADPN----RTDYDGRSPLHLAASR---GYEEIMTFLIQKGVDI-- 439 (662)
Q Consensus 373 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~~----~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~-- 439 (662)
.+..+..+.||||.||..|+.++|+.|++ .+.+++ ..+..|.||||+|+.. |+.+++++|+++|+++
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 34567788999999999999999998887 566665 4578999999999987 9999999999998653
Q ss_pred -----cc----cCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccc----------------cchHHHHHHHcCCHHHHH
Q 006072 440 -----NL----KDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE----------------AGSFLCTAVARGDSDLLK 494 (662)
Q Consensus 440 -----~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~~~l~~A~~~~~~~~v~ 494 (662)
+. .|..|.||||+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.++++
T Consensus 86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 165 (273)
T 2pnn_A 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165 (273)
T ss_dssp HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence 22 56789999999999999999999999999998764 889999999999999999
Q ss_pred HHHH---cCCCCCCCCCCCCcHHHHHHHhCc---------HHHHHHHHHCCCCCC-------CCCCCCCChHHHHHHcCC
Q 006072 495 RVLS---NGIDPNTRDYDLRTPLHVAASEGL---------YLMAKLLVEAGASVF-------PKDRWGNTPLDEGRMCGN 555 (662)
Q Consensus 495 ~Ll~---~g~~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~ga~~~-------~~d~~g~tpl~~A~~~~~ 555 (662)
+|++ +|++++.+|..|+||||+|+..|+ .+++++|+++|++++ .+|..|+||||+|+..|+
T Consensus 166 ~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~ 245 (273)
T 2pnn_A 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245 (273)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence 9999 999999999999999999999988 899999999999997 489999999999999999
Q ss_pred HHHHHHHHhccc-cccccCCCCC
Q 006072 556 KNLIKLLEDAKS-TQLLEFPHGF 577 (662)
Q Consensus 556 ~~iv~~Ll~~ga-~~~~~~~~~~ 577 (662)
.+++++|+++|| |+..+.+.++
T Consensus 246 ~~iv~~Ll~~ga~dp~~~~~~~~ 268 (273)
T 2pnn_A 246 IGVLAYILQREIHEPECRHAAAH 268 (273)
T ss_dssp HHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHCCCCCchhhhhhhh
Confidence 999999999999 6666655443
No 30
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=283.60 Aligned_cols=216 Identities=20% Similarity=0.249 Sum_probs=187.7
Q ss_pred HHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 006072 349 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI 428 (662)
Q Consensus 349 l~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 428 (662)
+..+...++...+..+++... +++..+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.++
T Consensus 63 L~~Aa~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~ 140 (285)
T 3d9h_A 63 MHEAAIHGHQLSLRNLISQGW--AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC 140 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC--CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHH
Confidence 333444444444444444332 344567788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccc--ccchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 006072 429 MTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 506 (662)
Q Consensus 429 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~ 506 (662)
+++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++.. .|.||||.|+..|+.+++++|+++|++++.
T Consensus 141 v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~- 218 (285)
T 3d9h_A 141 VNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ- 218 (285)
T ss_dssp HHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-
T ss_pred HHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-
Confidence 999999999998654 5999999999999999999999999998875 478999999999999999999999999995
Q ss_pred CCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhc-ccccc
Q 006072 507 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA-KSTQL 570 (662)
Q Consensus 507 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~-ga~~~ 570 (662)
|..|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+ ++.+++++|+++ |++..
T Consensus 219 ~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 219 GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 889999999999999999999999999999999999999999999 567999999998 66643
No 31
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.1e-33 Score=272.85 Aligned_cols=215 Identities=26% Similarity=0.348 Sum_probs=191.9
Q ss_pred HHHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHH
Q 006072 348 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE 427 (662)
Q Consensus 348 il~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 427 (662)
.+..+...++.......++...+ ++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 91 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYE 91 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCcHHHHHHHHHcCCC--cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence 34444444444444444444333 3445667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC-CCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccc--ccchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 006072 428 IMTFLIQKG-VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPN 504 (662)
Q Consensus 428 ~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~ 504 (662)
++++|+++| .+++..+..|.||||+|+..|+.+++++|+++|++++.. .|.||||.|+..|+.+++++|+++|++++
T Consensus 92 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 171 (237)
T 3b7b_A 92 VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH 171 (237)
T ss_dssp HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT
T ss_pred HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence 999999998 899999999999999999999999999999999998875 48899999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHh
Q 006072 505 TRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 564 (662)
Q Consensus 505 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 564 (662)
.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+.+..|++
T Consensus 172 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 172 AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876666554
No 32
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1e-33 Score=295.07 Aligned_cols=211 Identities=20% Similarity=0.191 Sum_probs=194.5
Q ss_pred ccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcH
Q 006072 370 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTP 449 (662)
Q Consensus 370 ~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 449 (662)
.++.+..+.+|.||||.||..|+.++|++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++. ..|.||
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~ 87 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKP 87 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCH
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCH
Confidence 456677889999999999999999999999999999999999999999999999999999999999997654 478999
Q ss_pred HHHHHHhCCHHHHHHHHHc----CCCCcc-----------------c--ccchHHHHHHHcC--CHHHHHHHHHcCCCCC
Q 006072 450 LLEAIKYGNDGAASLLVKE----GASLNV-----------------E--EAGSFLCTAVARG--DSDLLKRVLSNGIDPN 504 (662)
Q Consensus 450 L~~A~~~~~~~~v~~Ll~~----g~~~~~-----------------~--~~~~~l~~A~~~~--~~~~v~~Ll~~g~~~~ 504 (662)
||+|+..|+.+++++|++. |++++. . .|.||||+|+..| +.+++++|+++|++++
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~ 167 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence 9999999999999999999 777654 2 4789999999999 9999999999999999
Q ss_pred CCCCCCCcHHHHHHHhCcHHHHHHHHHCCCC-----CCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCcc
Q 006072 505 TRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-----VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQD 579 (662)
Q Consensus 505 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-----~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~ 579 (662)
..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|+++...+..|.++
T Consensus 168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 247 (364)
T 3ljn_A 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVP 247 (364)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 9999999999999999999999999999999 99999999999999999999999999999999999999999887
Q ss_pred ccc
Q 006072 580 TAD 582 (662)
Q Consensus 580 ~~~ 582 (662)
...
T Consensus 248 L~~ 250 (364)
T 3ljn_A 248 LYL 250 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 33
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.7e-33 Score=298.46 Aligned_cols=235 Identities=23% Similarity=0.216 Sum_probs=181.8
Q ss_pred HHHHHHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 006072 345 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG 424 (662)
Q Consensus 345 ~~~il~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 424 (662)
+...+..+...+....+..+++...+ ++..+..+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|
T Consensus 14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 14 GLTPLHVASFMGHLPIVKNLLQRGAS--PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCC--SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 44556666666666666666665433 3344556678888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccc--ccchHHHHHHHcCCHHHHHHHHHcCCC
Q 006072 425 YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGID 502 (662)
Q Consensus 425 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~ 502 (662)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+++.+.. .|.||||.|+..|+.+++++|+++|++
T Consensus 92 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 171 (437)
T 1n11_A 92 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH 171 (437)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 888888888888888888888888888888888888888888887776543 467888888888888888888888888
Q ss_pred CCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCcccc
Q 006072 503 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTA 581 (662)
Q Consensus 503 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~ 581 (662)
++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++....+..|.++..
T Consensus 172 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 250 (437)
T 1n11_A 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250 (437)
T ss_dssp TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888887777777766655
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=5.8e-33 Score=271.22 Aligned_cols=206 Identities=24% Similarity=0.253 Sum_probs=124.0
Q ss_pred hhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccC-CCCCcHHHHH
Q 006072 375 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NFGNTPLLEA 453 (662)
Q Consensus 375 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A 453 (662)
..+..+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 334455566666666666666666666666666666666666666666666666666666666555433 2356666666
Q ss_pred HHhCCHHHHHHHHHcCCCCccc--ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCc-HHHHHHHH
Q 006072 454 IKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGL-YLMAKLLV 530 (662)
Q Consensus 454 ~~~~~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll 530 (662)
+..|+.+++++|++.|++++.. .+.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++ .+++++|+
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~ 163 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHH
Confidence 6666666666666666655543 24566666666666666666666666666666666666666664444 55666666
Q ss_pred HCCCCCCCCCC-CCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCccc
Q 006072 531 EAGASVFPKDR-WGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDT 580 (662)
Q Consensus 531 ~~ga~~~~~d~-~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~ 580 (662)
+.|++++..+. .|.||||+|+..|+.+++++|+++|+++...+..|.++.
T Consensus 164 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l 214 (240)
T 3eu9_A 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214 (240)
T ss_dssp HTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHH
T ss_pred hcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 66666666554 566666666666666666666666666655555554443
No 35
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=6.2e-34 Score=297.21 Aligned_cols=210 Identities=19% Similarity=0.197 Sum_probs=193.8
Q ss_pred cchhh-hhhhhhHhHHhccCCHHHHHHHH--------HcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccC
Q 006072 373 ISKHE-AELALKVNSAAYHGDLYQLEGLI--------RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 443 (662)
Q Consensus 373 ~~~~~-~~~~~~L~~A~~~g~~~~v~~Ll--------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 443 (662)
++..+ ..|.||||+|+..|+.+++++|+ +.|+++|..|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 117 ~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~ 196 (373)
T 2fo1_E 117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN 196 (373)
T ss_dssp TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccC
Confidence 33444 67899999999999998888776 7899999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHcC---CCCcc--cccchHHHHHHHcC---CHHHHHHHHHcCCCCCC--------CC
Q 006072 444 NFGNTPLLEAIKYGNDGAASLLVKEG---ASLNV--EEAGSFLCTAVARG---DSDLLKRVLSNGIDPNT--------RD 507 (662)
Q Consensus 444 ~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~--~~~~~~l~~A~~~~---~~~~v~~Ll~~g~~~~~--------~~ 507 (662)
..|.||||+|+..|+.+++++|++++ ++++. ..|.||||+|+..+ +.+++++|+++|++++. .|
T Consensus 197 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d 276 (373)
T 2fo1_E 197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276 (373)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSS
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCccc
Confidence 99999999999999999999999987 66665 45889999999998 89999999999999986 57
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHHCC-CCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCccccc
Q 006072 508 YDLRTPLHVAASEGLYLMAKLLVEAG-ASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTAD 582 (662)
Q Consensus 508 ~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~ 582 (662)
..|.||||+|+..|+.++|++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|++....+..|.++...
T Consensus 277 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~ 352 (373)
T 2fo1_E 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352 (373)
T ss_dssp CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHH
T ss_pred ccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHH
Confidence 78999999999999999999999886 9999999999999999999999999999999999999998888776553
No 36
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.2e-33 Score=283.44 Aligned_cols=209 Identities=24% Similarity=0.216 Sum_probs=172.5
Q ss_pred HHHHHHhcCCcchhhhhhhcCcccc-ccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCc
Q 006072 347 KVLTNLLQGKESDLRLKQLQSDITF-HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY 425 (662)
Q Consensus 347 ~il~~l~~~~~~~~~~~~l~~d~~~-~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 425 (662)
..+..+...+....+..++...... .++..+..|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~ 90 (282)
T 1oy3_D 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRA 90 (282)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTC
T ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 3444555555555555555433322 255667789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC-----------------------------------------------CcccCCCCCcHHHHHHHhCC
Q 006072 426 EEIMTFLIQKGVD-----------------------------------------------INLKDNFGNTPLLEAIKYGN 458 (662)
Q Consensus 426 ~~~v~~Ll~~g~~-----------------------------------------------~~~~~~~g~t~L~~A~~~~~ 458 (662)
.+++++|+++|++ ++..+..|.||||+|+..|+
T Consensus 91 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~ 170 (282)
T 1oy3_D 91 HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKD 170 (282)
T ss_dssp HHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTC
T ss_pred cchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCC
Confidence 9999999998765 67788899999999999999
Q ss_pred HHHHHHHHHcCCCCcccc---cchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCC
Q 006072 459 DGAASLLVKEGASLNVEE---AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535 (662)
Q Consensus 459 ~~~v~~Ll~~g~~~~~~~---~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 535 (662)
.+++++|+++|++++..+ |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++||+
T Consensus 171 ~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 250 (282)
T 1oy3_D 171 AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250 (282)
T ss_dssp HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCC
Confidence 999999999999998864 88999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHcCC
Q 006072 536 VFPKDRWGNTPLDEGRMCGN 555 (662)
Q Consensus 536 ~~~~d~~g~tpl~~A~~~~~ 555 (662)
++.+|..|.||+++|....+
T Consensus 251 ~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 251 EPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp CCCCC---------------
T ss_pred cCcCCCcccccccccCCccc
Confidence 99999999999999987664
No 37
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=7.6e-33 Score=270.36 Aligned_cols=221 Identities=22% Similarity=0.238 Sum_probs=194.4
Q ss_pred HHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCcHH
Q 006072 349 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEE 427 (662)
Q Consensus 349 l~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~ 427 (662)
+..++..++.......++...+ ++..+..|.||||.|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ 90 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYD--VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS 90 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHH
T ss_pred HHHHHHcCChHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHH
Confidence 4445555555555555555433 44556778999999999999999999999999987654 45999999999999999
Q ss_pred HHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccc--ccchHHHHHHHcCC-HHHHHHHHHcCCCCC
Q 006072 428 IMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGD-SDLLKRVLSNGIDPN 504 (662)
Q Consensus 428 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~-~~~v~~Ll~~g~~~~ 504 (662)
++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. .|.||||.|+..++ .+++++|++.|++++
T Consensus 91 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~ 170 (240)
T 3eu9_A 91 MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN 170 (240)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTT
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999999998875 47899999997776 899999999999999
Q ss_pred CCCC-CCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccc
Q 006072 505 TRDY-DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL 571 (662)
Q Consensus 505 ~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~ 571 (662)
..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|++++++...
T Consensus 171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238 (240)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred hhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence 9997 899999999999999999999999999999999999999999999999999999999987643
No 38
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.9e-32 Score=282.34 Aligned_cols=226 Identities=24% Similarity=0.289 Sum_probs=186.6
Q ss_pred HHHHHHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCC-----------------
Q 006072 345 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPN----------------- 407 (662)
Q Consensus 345 ~~~il~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~----------------- 407 (662)
+...+..++++++...+..+++...+.+.. .+..|.||||.||..|+.++|++|+++|++++
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~-~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 103 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence 455667777777777777777765543332 22347899999999999999999999887654
Q ss_pred ----------------CCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCccc----------CCCCCcHHHHHHHhCCHHH
Q 006072 408 ----------------RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK----------DNFGNTPLLEAIKYGNDGA 461 (662)
Q Consensus 408 ----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------~~~g~t~L~~A~~~~~~~~ 461 (662)
..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~ 183 (337)
T 4g8k_A 104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 183 (337)
T ss_dssp CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHH
T ss_pred cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHH
Confidence 45667889999999999999999999999887653 4468899999999999999
Q ss_pred HHHHHH-cCCCCcccc--cchHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHC-C
Q 006072 462 ASLLVK-EGASLNVEE--AGSFLCTAVARGD----SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA-G 533 (662)
Q Consensus 462 v~~Ll~-~g~~~~~~~--~~~~l~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g 533 (662)
+++|++ .|++++..+ |.++++.++..+. ..++++|+++|+++|.+|..|.||||+|+..|+.++++.|++. |
T Consensus 184 v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~ 263 (337)
T 4g8k_A 184 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 263 (337)
T ss_dssp HHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT
T ss_pred HHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC
Confidence 999995 588887754 6788887776544 3578889999999999999999999999999999999999985 8
Q ss_pred CCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccc
Q 006072 534 ASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL 571 (662)
Q Consensus 534 a~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~ 571 (662)
++++.+|.+|+||||+|+..|+.++|++|+++||+++.
T Consensus 264 ~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~ 301 (337)
T 4g8k_A 264 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 301 (337)
T ss_dssp CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 99999999999999999999999999999999998754
No 39
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=6.7e-33 Score=268.70 Aligned_cols=213 Identities=23% Similarity=0.174 Sum_probs=185.0
Q ss_pred HHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHHcCc
Q 006072 349 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG--ADPNR-TDYDGRSPLHLAASRGY 425 (662)
Q Consensus 349 l~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~g~t~L~~A~~~~~ 425 (662)
+..++..++.......++.... .....+..|.||||.|+..|+.+++++|++.| .+++. .+..|.||||+|+..|+
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 84 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN 84 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGG-GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCC
T ss_pred HHHHHHhCCHHHHHHHHhcCcc-ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCC
Confidence 3344444444444444443322 12335778899999999999999999999999 55555 78899999999999999
Q ss_pred HHHHHHHHhcC--CCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccc--cchHHHHHHHcCCHHHHHHHHHcC-
Q 006072 426 EEIMTFLIQKG--VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNG- 500 (662)
Q Consensus 426 ~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g- 500 (662)
.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++..+ |.||||.|+..|+.+++++|+++|
T Consensus 85 ~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 164 (228)
T 2dzn_A 85 LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164 (228)
T ss_dssp HHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred HHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 99999999998 8999999999999999999999999999999999998764 889999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHhCcHHHHHHHH-HCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhc
Q 006072 501 IDPNTRDYDLRTPLHVAASEGLYLMAKLLV-EAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 565 (662)
Q Consensus 501 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ 565 (662)
++++.+|..|+||||+|+..|+.+++++|+ ++|+|++.+|..|.||+++|+.. +++++|+++
T Consensus 165 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 165 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred ccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 999999999999999999999999999999 89999999999999999999754 677777654
No 40
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=2.6e-34 Score=296.89 Aligned_cols=254 Identities=18% Similarity=0.213 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEeeccCCCC
Q 006072 14 EAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDY 93 (662)
Q Consensus 14 ~~~~~lrl~rllRl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~H~~aC~~~~i~~~~~~~~~~~~w~~~~~~~~~ 93 (662)
+.+|++|++|++|+.|..+.++.+..... .....+..+++.+++++|++||+++.+....+
T Consensus 95 ~~~r~lr~~R~lrl~r~~~~~~~l~~~l~--~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~~~----------------- 155 (355)
T 3beh_A 95 PDWSLYCAVWLLKPLRDSTFFPVLGRVLA--NEARNLIGVTTLFGVVLFAVALAAYVIERDIQ----------------- 155 (355)
T ss_dssp GGGGGGGGGGGSHHHHTCSSHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------------
Confidence 34444444444444444333333333222 12335667777788889999999998864211
Q ss_pred CcchhhccchHHHHHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHH
Q 006072 94 SYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMT 173 (662)
Q Consensus 94 ~~~~~~~~~~~~~Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 173 (662)
.+.+..|..|+||+++|||||||||+.|.|..++++++++|++|++++++++|.+++.+.+. .++
T Consensus 156 -------~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~-----~~~--- 220 (355)
T 3beh_A 156 -------PEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQE-----VRR--- 220 (355)
T ss_dssp -------HHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---
T ss_pred -------CcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---
Confidence 11234689999999999999999999999999999999999999999999999998876431 000
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhhccHhHHHhhchHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHhccc
Q 006072 174 DLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHE 253 (662)
Q Consensus 174 ~~~~~m~~~~l~~~l~~~i~~~~~~~~~~~~~~~~~l~~Lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~ 253 (662)
++++ ...+.++++|+|++++++++++++..++.
T Consensus 221 -------------------~~~~----------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~ 253 (355)
T 3beh_A 221 -------------------GDFV----------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRA 253 (355)
T ss_dssp -------------------HHHH----------------------------HHHC-------------------------
T ss_pred -------------------Hhhc----------------------------ccchhhhcccccccCCHHHHHHHHHhceE
Confidence 0000 02367888999999999999999999999
Q ss_pred eeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEecHHH
Q 006072 254 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 333 (662)
Q Consensus 254 ~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~~~ 333 (662)
+.|+|||.|+++||.++++|||.+|.++++..+ ...+++|++|||.+++.+.|++++++|.++|+++.+++++
T Consensus 254 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~~ 326 (355)
T 3beh_A 254 RTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSAD 326 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECCCCEEEeCCCcCceEEEEEeeEEEEEECC-------eeEECCCCEEeehHHhCCCCcceEEEECccEEEEEEeHHH
Confidence 999999999999999999999999999988633 2468999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcHHHHHHHHhcC
Q 006072 334 FTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 334 ~~~~l~~~~~~~~~il~~l~~~ 355 (662)
|.++++.+|+....+++.+.++
T Consensus 327 f~~ll~~~p~~~~~l~~~l~~r 348 (355)
T 3beh_A 327 FQMLCSSSPEIAEIFRKTALER 348 (355)
T ss_dssp ----------------------
T ss_pred HHHHHHHCHHHHHHHHHHHHHH
Confidence 9999999999999888776554
No 41
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=8e-33 Score=267.22 Aligned_cols=191 Identities=24% Similarity=0.260 Sum_probs=178.1
Q ss_pred CCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q 006072 391 GDLYQLEGLIRAGADPNRT-DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEG 469 (662)
Q Consensus 391 g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 469 (662)
|+.+++++|++.|++++.. |..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.+
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 6788899999999998765 899999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCcc--cccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCCh
Q 006072 470 A-SLNV--EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTP 546 (662)
Q Consensus 470 ~-~~~~--~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 546 (662)
+ +++. ..+.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 161 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence 7 5555 458899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhccccccccCCCCCcccc
Q 006072 547 LDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTA 581 (662)
Q Consensus 547 l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~ 581 (662)
||+|+..|+.+++++|+++|+++...+..|.++..
T Consensus 162 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~ 196 (223)
T 2f8y_A 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 196 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHH
Confidence 99999999999999999999999888887766554
No 42
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.4e-32 Score=281.90 Aligned_cols=210 Identities=26% Similarity=0.299 Sum_probs=195.3
Q ss_pred cchhhhhhhhhHhHHhccCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHH
Q 006072 373 ISKHEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLL 451 (662)
Q Consensus 373 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 451 (662)
....+..+.++||.|+..|+.+.++.++.. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 96 (351)
T 3utm_A 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 345567788999999999999999999976 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCCcccc--cchHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------------------
Q 006072 452 EAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD---------------------- 507 (662)
Q Consensus 452 ~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~---------------------- 507 (662)
+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|+++|++++..+
T Consensus 97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~ 176 (351)
T 3utm_A 97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE 176 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence 9999999999999999999998765 7899999999999999999999999987654
Q ss_pred --------------------------------CCCCcHHHHHHHh---CcHHHHHHHHHCCCCCCCCCCCCCChHHHHHH
Q 006072 508 --------------------------------YDLRTPLHVAASE---GLYLMAKLLVEAGASVFPKDRWGNTPLDEGRM 552 (662)
Q Consensus 508 --------------------------------~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 552 (662)
..|.||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 256 (351)
T 3utm_A 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256 (351)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHH
Confidence 4577999999998 66899999999999999999999999999999
Q ss_pred cCCHHHHHHHHhccccccccCCCCCccccc
Q 006072 553 CGNKNLIKLLEDAKSTQLLEFPHGFQDTAD 582 (662)
Q Consensus 553 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~ 582 (662)
.|+.+++++|+++|++++..+..|.++...
T Consensus 257 ~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~ 286 (351)
T 3utm_A 257 RAHNDVMEVLHKHGAKMNALDSLGQTALHR 286 (351)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred cCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 999999999999999999999888887653
No 43
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=1.2e-33 Score=279.85 Aligned_cols=194 Identities=19% Similarity=0.144 Sum_probs=175.4
Q ss_pred hhhhhHhHHhccCCHHHHHHHHH----cCCCCCCCC----CCCCcHHHHHH---HcCcHHHHHHHHhcCCC---------
Q 006072 379 ELALKVNSAAYHGDLYQLEGLIR----AGADPNRTD----YDGRSPLHLAA---SRGYEEIMTFLIQKGVD--------- 438 (662)
Q Consensus 379 ~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~----~~g~t~L~~A~---~~~~~~~v~~Ll~~g~~--------- 438 (662)
-+.++||.|+..|+.+.++.|++ .|++++..+ ..|.||||+|+ ..|+.+++++|++.|++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 35789999999999996555554 899998765 77999999999 67999999999998754
Q ss_pred --CcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccc----------------cchHHHHHHHcCCHHHHHHHHH--
Q 006072 439 --INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE----------------AGSFLCTAVARGDSDLLKRVLS-- 498 (662)
Q Consensus 439 --~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~~~l~~A~~~~~~~~v~~Ll~-- 498 (662)
++..|..|.||||+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|++
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 44455689999999999999999999999999998865 8899999999999999999999
Q ss_pred -cCCCCCCCCCCCCcHHHHHHHhCc---------HHHHHHHHHCCCCC-------CCCCCCCCChHHHHHHcCCHHHHHH
Q 006072 499 -NGIDPNTRDYDLRTPLHVAASEGL---------YLMAKLLVEAGASV-------FPKDRWGNTPLDEGRMCGNKNLIKL 561 (662)
Q Consensus 499 -~g~~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~~~~~~iv~~ 561 (662)
+|++++.+|..|+||||+|+..++ .+++++|+++|+++ +.+|..|+||||+|+..|+.+++++
T Consensus 164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~ 243 (260)
T 3jxi_A 164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243 (260)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999999998887 79999999999998 6799999999999999999999999
Q ss_pred HHhcccccccc
Q 006072 562 LEDAKSTQLLE 572 (662)
Q Consensus 562 Ll~~ga~~~~~ 572 (662)
|+++|+++...
T Consensus 244 Ll~~g~~~~~~ 254 (260)
T 3jxi_A 244 IIRREIADAAA 254 (260)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHhCCCcccc
Confidence 99999987554
No 44
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.8e-33 Score=280.84 Aligned_cols=219 Identities=16% Similarity=0.175 Sum_probs=197.3
Q ss_pred cHHHHHHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 006072 344 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR 423 (662)
Q Consensus 344 ~~~~il~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 423 (662)
.+...+..+...+....+..+++...+.+.. +|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus 30 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 30 HGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence 3445666666677666666666665544333 379999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhcCCCCcccCCCC-CcHHHHHHHhCCHHHHHHHHHcCCCCccc-ccchHHHHHHHcCCHHHHHHHHHcCC
Q 006072 424 GYEEIMTFLIQKGVDINLKDNFG-NTPLLEAIKYGNDGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGI 501 (662)
Q Consensus 424 ~~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~~l~~A~~~~~~~~v~~Ll~~g~ 501 (662)
|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|++.... .|.||||.|+..|+.+++++|+++|+
T Consensus 106 g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp TCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCC
Confidence 99999999999999999999999 89999999999999999999999988665 78999999999999999999999999
Q ss_pred CCCCCCCCCCcH-HHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccC
Q 006072 502 DPNTRDYDLRTP-LHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEF 573 (662)
Q Consensus 502 ~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~ 573 (662)
+++.+|..|.|| ||+|+..|+.+++++|+++|++++.+|. .|+..|+.+++++|+++|++.....
T Consensus 186 d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~~ 251 (285)
T 3kea_A 186 STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSDS 251 (285)
T ss_dssp HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTCT
T ss_pred CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCcc
Confidence 999999999998 9999999999999999999999999883 5678999999999999999876543
No 45
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6.4e-32 Score=278.35 Aligned_cols=208 Identities=26% Similarity=0.290 Sum_probs=187.5
Q ss_pred hhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHhcCCCCc-------------
Q 006072 375 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDIN------------- 440 (662)
Q Consensus 375 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------- 440 (662)
+.+.++.|+||.|+.+|++++|+.|+++|+++|.++. .|+||||+||..|+.+++++|+++|++++
T Consensus 20 ~~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 20 RAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99 (337)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence 4456789999999999999999999999999998875 59999999999999999999999988654
Q ss_pred --------------------ccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccc------------ccchHHHHHHHcC
Q 006072 441 --------------------LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE------------EAGSFLCTAVARG 488 (662)
Q Consensus 441 --------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~------------~~~~~l~~A~~~~ 488 (662)
..|..|.||||+|+..|+.+++++|+++|++++.. .|.||||.|+..|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence 45677899999999999999999999999988652 3679999999999
Q ss_pred CHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHhCc----HHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHH
Q 006072 489 DSDLLKRVLS-NGIDPNTRDYDLRTPLHVAASEGL----YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563 (662)
Q Consensus 489 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll 563 (662)
+.+++++|++ .|+++|.+|..|.||||.++..+. .+++++|+++|+++|.+|..|+||||+|+..|+.++++.|+
T Consensus 180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259 (337)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 9999999996 599999999999999999887543 46899999999999999999999999999999999999999
Q ss_pred hc-cccccccCCCCCccccc
Q 006072 564 DA-KSTQLLEFPHGFQDTAD 582 (662)
Q Consensus 564 ~~-ga~~~~~~~~~~~~~~~ 582 (662)
+. |++...++..|.++...
T Consensus 260 ~~~~~~vn~~d~~G~TpL~~ 279 (337)
T 4g8k_A 260 EQEHIEINDTDSDGKTALLL 279 (337)
T ss_dssp TSTTCCTTCBCTTSCBHHHH
T ss_pred HhcCCcccCcCCCCCCHHHH
Confidence 85 89999999999887653
No 46
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.98 E-value=2.6e-32 Score=276.27 Aligned_cols=216 Identities=26% Similarity=0.339 Sum_probs=185.7
Q ss_pred HHHHHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCc
Q 006072 346 RKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY 425 (662)
Q Consensus 346 ~~il~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 425 (662)
...+..+...++...+..+++...+ ++..+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+
T Consensus 41 ~t~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~ 118 (299)
T 1s70_B 41 GAVFLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118 (299)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred ccHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 3445555555555555555554433 44566778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCcc----------------------------cc
Q 006072 426 EEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKE-GASLNV----------------------------EE 476 (662)
Q Consensus 426 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~----------------------------~~ 476 (662)
.+++++|+++|++++..+..|.||||+|+..++.++++.++.. |.+++. ..
T Consensus 119 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 198 (299)
T 1s70_B 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS 198 (299)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCC
Confidence 9999999999999999999999999999999999999877753 444332 35
Q ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCH
Q 006072 477 AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK 556 (662)
Q Consensus 477 ~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~ 556 (662)
|.||||.|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+.....
T Consensus 199 g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~ 278 (299)
T 1s70_B 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILG 278 (299)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGH
T ss_pred CCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999765444
Q ss_pred HHHHHHH
Q 006072 557 NLIKLLE 563 (662)
Q Consensus 557 ~iv~~Ll 563 (662)
.+.+++.
T Consensus 279 ~l~~l~~ 285 (299)
T 1s70_B 279 YLEELQK 285 (299)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 47
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=7.8e-32 Score=268.82 Aligned_cols=191 Identities=21% Similarity=0.254 Sum_probs=179.9
Q ss_pred hhhhhhhHhHHhccCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCC-CCcccCCCCCcHHHHH
Q 006072 377 EAELALKVNSAAYHGDLYQLEGLIRAGAD--PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV-DINLKDNFGNTPLLEA 453 (662)
Q Consensus 377 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A 453 (662)
+....+++|.|+..|+.+.++.+++.+.+ +|..|.+|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|
T Consensus 73 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 73 RLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence 34456889999999999999999988766 89999999999999999999999999999998 9999999999999999
Q ss_pred H-----HhCCHHHHHHHHHcCCCCccc--ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHH
Q 006072 454 I-----KYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMA 526 (662)
Q Consensus 454 ~-----~~~~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 526 (662)
+ ..++.+++++|++.|.+++.. .|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv 232 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIA 232 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence 9 678899999999999887764 488999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-CCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccc
Q 006072 527 KLLVE-AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 567 (662)
Q Consensus 527 ~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga 567 (662)
++|++ .|+|++.+|..|.||||+|+..|+.+++++|++++.
T Consensus 233 ~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 233 GLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 99999 899999999999999999999999999999998763
No 48
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=1e-30 Score=246.09 Aligned_cols=161 Identities=29% Similarity=0.377 Sum_probs=138.3
Q ss_pred CCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccc--cchHHHH
Q 006072 406 PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCT 483 (662)
Q Consensus 406 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~ 483 (662)
+|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+ |.||||.
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 45567777788888888888888888877777777777777788888888888888888887777776544 6778888
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHH
Q 006072 484 AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 563 (662)
Q Consensus 484 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll 563 (662)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.+++++|+
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 187 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc
Q 006072 564 DAK 566 (662)
Q Consensus 564 ~~g 566 (662)
++|
T Consensus 188 ~~~ 190 (192)
T 2rfm_A 188 EVR 190 (192)
T ss_dssp HHH
T ss_pred hcc
Confidence 876
No 49
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=6.5e-30 Score=241.57 Aligned_cols=190 Identities=21% Similarity=0.475 Sum_probs=178.6
Q ss_pred CcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh-ccHhHHHhhchHHHHHHHHHHHHHHHhcccccccCCC
Q 006072 162 GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCS 240 (662)
Q Consensus 162 ~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~i~~~~~~~~~~~-~~~~~~l~~Lp~~L~~~i~~~~~~~~l~~~~~f~~~~ 240 (662)
+....+|+++++.+++||+.+++|..||.||++|++|.|+.. ++++++++.||++||.++..+.+.++++++|+|.+++
T Consensus 4 ~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~ 83 (198)
T 2ptm_A 4 DSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGAD 83 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCC
Confidence 456778999999999999999999999999999999999754 6788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEE
Q 006072 241 SEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV 320 (662)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a 320 (662)
++++..++..++...|.||++|+++||.++.+|||.+|.|+++. .+|+ .+..+++|++|||.+++.+.|++++++|
T Consensus 84 ~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a 159 (198)
T 2ptm_A 84 SNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERRVASVKC 159 (198)
T ss_dssp HHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCCSSEEEE
T ss_pred HHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe--EEEEecCCCEechHHHcCCCccceEEEE
Confidence 99999999999999999999999999999999999999999985 3444 7889999999999999999999999999
Q ss_pred ccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 321 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 321 ~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
.++|+++.+++++|.+++..+|.....++..+.++
T Consensus 160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~r 194 (198)
T 2ptm_A 160 ETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRR 194 (198)
T ss_dssp SSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred eeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 99999999999999999999999999888877654
No 50
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=2.4e-30 Score=237.58 Aligned_cols=162 Identities=27% Similarity=0.334 Sum_probs=123.5
Q ss_pred hhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCC
Q 006072 379 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458 (662)
Q Consensus 379 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 458 (662)
.+.||||.|+..|+.+++++|++.|.+++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666655555
Q ss_pred HHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCC
Q 006072 459 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 538 (662)
Q Consensus 459 ~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 538 (662)
.+ ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 82 ~~-------------------------------~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 130 (167)
T 3v31_A 82 TD-------------------------------IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130 (167)
T ss_dssp HH-------------------------------HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HH-------------------------------HHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 54 55555555667888899999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHcCCHHHHHHHHhccccccc
Q 006072 539 KDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL 571 (662)
Q Consensus 539 ~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~ 571 (662)
+|..|.||||+|+..|+.+++++|++++++...
T Consensus 131 ~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~ 163 (167)
T 3v31_A 131 ETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163 (167)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887543
No 51
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=5.4e-30 Score=235.71 Aligned_cols=160 Identities=37% Similarity=0.526 Sum_probs=129.8
Q ss_pred hhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHH
Q 006072 376 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 455 (662)
Q Consensus 376 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 455 (662)
....+.++|+.||..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 34556677888888888888888888888888777788888888888888888888888888887777777777777777
Q ss_pred hCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCC
Q 006072 456 YGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535 (662)
Q Consensus 456 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 535 (662)
.|+.+++++|++ +|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 90 ~~~~~~~~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 138 (169)
T 2y1l_E 90 FGHLEIVEVLLK-------------------------------NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138 (169)
T ss_dssp TTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHH-------------------------------cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 666665555555 4556778888899999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHcCCHHHHHHHHhcc
Q 006072 536 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK 566 (662)
Q Consensus 536 ~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g 566 (662)
++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 139 ~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 9999999999999999999999999999876
No 52
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=2e-30 Score=236.83 Aligned_cols=157 Identities=29% Similarity=0.387 Sum_probs=121.0
Q ss_pred hhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCH
Q 006072 380 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND 459 (662)
Q Consensus 380 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 459 (662)
..+|||.|+..|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3567777777777777777777777777777777777777766 777777777777777776666666666666665555
Q ss_pred HHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCC-CCC
Q 006072 460 GAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-VFP 538 (662)
Q Consensus 460 ~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~ 538 (662)
+++++ |+++|++++.+|..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus 84 ~~v~~-------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 132 (162)
T 1ihb_A 84 DTLQT-------------------------------LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132 (162)
T ss_dssp HHHHH-------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC
T ss_pred HHHHH-------------------------------HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCC
Confidence 55555 4555567778888999999999999999999999999998 589
Q ss_pred CCCCCCChHHHHHHcCCHHHHHHHHhcccc
Q 006072 539 KDRWGNTPLDEGRMCGNKNLIKLLEDAKST 568 (662)
Q Consensus 539 ~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~ 568 (662)
+|..|.||||+|+..|+.+++++|+++|||
T Consensus 133 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 133 RNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999999999999999999999999986
No 53
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.5e-30 Score=238.75 Aligned_cols=168 Identities=24% Similarity=0.304 Sum_probs=123.3
Q ss_pred hhhHhHHhccCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCH
Q 006072 381 ALKVNSAAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND 459 (662)
Q Consensus 381 ~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 459 (662)
.+|||.|+..|+.+.++.|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 4677777777777777777777666 666777777777777777777777777777777777777777777777766666
Q ss_pred HHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCC
Q 006072 460 GAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPK 539 (662)
Q Consensus 460 ~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 539 (662)
+++++|+++ |++++.+|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 83 ~~v~~Ll~~-------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 131 (172)
T 3v30_A 83 DIVGLLLER-------------------------------DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131 (172)
T ss_dssp HHHHHHHTT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHc-------------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 665555554 5566777778888888888888888888888888888888
Q ss_pred CCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCcc
Q 006072 540 DRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQD 579 (662)
Q Consensus 540 d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~ 579 (662)
|..|.||||+|+..|+.+++++|+++|++....+..+.+|
T Consensus 132 ~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 132 ADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred CCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 8888888888888888888888888888777666555443
No 54
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=5.4e-30 Score=236.51 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=114.3
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcCCC-CcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHH
Q 006072 413 GRSPLHLAASRGYEEIMTFLIQKGVD-INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSD 491 (662)
Q Consensus 413 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~ 491 (662)
+.||||.|+..|+.++++.|++.|.+ ++..+..|.||||+|+..|+.+++++|++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------------------------ 57 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE------------------------ 57 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH------------------------
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHH------------------------
Confidence 35677777777777777777777665 66666677777777666665555555554
Q ss_pred HHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccc
Q 006072 492 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL 571 (662)
Q Consensus 492 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~ 571 (662)
+|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++..
T Consensus 58 -------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 130 (172)
T 3v30_A 58 -------WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130 (172)
T ss_dssp -------HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred -------cCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 5567778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccc
Q 006072 572 EFPHGFQDTAD 582 (662)
Q Consensus 572 ~~~~~~~~~~~ 582 (662)
.+..|.++...
T Consensus 131 ~~~~g~t~l~~ 141 (172)
T 3v30_A 131 EADSGYTPMDL 141 (172)
T ss_dssp CCTTSCCHHHH
T ss_pred cCCCCCCHHHH
Confidence 99998887653
No 55
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=9.9e-31 Score=254.88 Aligned_cols=207 Identities=22% Similarity=0.236 Sum_probs=179.4
Q ss_pred HHHHHHhcCCcchhhhhhhcCccc--cccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 006072 347 KVLTNLLQGKESDLRLKQLQSDIT--FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG 424 (662)
Q Consensus 347 ~il~~l~~~~~~~~~~~~l~~d~~--~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 424 (662)
..+..++..+........++.... ..++..+..|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|
T Consensus 10 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 89 (236)
T 1ikn_D 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 89 (236)
T ss_dssp CTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHT
T ss_pred chhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 344555555555554444443322 246667788999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCC------CcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccc---ccchHHHHHHHcCCHHHHHH
Q 006072 425 YEEIMTFLIQKGVD------INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE---EAGSFLCTAVARGDSDLLKR 495 (662)
Q Consensus 425 ~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~---~~~~~l~~A~~~~~~~~v~~ 495 (662)
+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++.. .|.||||+|+..|+.+++++
T Consensus 90 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~ 169 (236)
T 1ikn_D 90 CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169 (236)
T ss_dssp CHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 99999999999876 5677889999999999999999999999999999875 57899999999999999999
Q ss_pred HHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCC--CCCCCCCChHHHHHHc
Q 006072 496 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF--PKDRWGNTPLDEGRMC 553 (662)
Q Consensus 496 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~~A~~~ 553 (662)
|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.. ..+..|.||.+.+...
T Consensus 170 Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 170 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred HHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 999999999999999999999999999999999999999876 8889999998766543
No 56
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=5.7e-30 Score=244.80 Aligned_cols=194 Identities=20% Similarity=0.422 Sum_probs=173.3
Q ss_pred HHHHHc-CcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh--ccHhHHHhhchHHHHHHHHHHHHHHHhcc
Q 006072 156 TALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS--YTEASVLQDIPISIRAKISQTLYLPYIEK 232 (662)
Q Consensus 156 ~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~i~~~~~~~~~~~--~~~~~~l~~Lp~~L~~~i~~~~~~~~l~~ 232 (662)
++++++ +.++++|+++++.+++||+.+++|++||.||++||+|.|+.. .+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 356677 677889999999999999999999999999999999999744 567889999999999999999998877 8
Q ss_pred cccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccC
Q 006072 233 VPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI 312 (662)
Q Consensus 233 ~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~ 312 (662)
+|+|.+++++++..++..++++.|.|||+|+++||.++++|||.+|.|+++. +| ..+..+++|++|||.+++.+.
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~--~~~~~l~~G~~fGe~~~~~~~ 154 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DN--TVLAILGKGDLIGSDSLTKEQ 154 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SS--CEEEEECTTCEEECSCCSSSS
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CC--eEEEEecCCCCcCcHHhccCC
Confidence 9999999999999999999999999999999999999999999999999885 33 678899999999999999988
Q ss_pred --CccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 313 --PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 313 --~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
+++++++|.++|+++.|++++|.+++..+|.....++..+.+.
T Consensus 155 ~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~ 199 (212)
T 3ukn_A 155 VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHD 199 (212)
T ss_dssp CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887653
No 57
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=2.1e-29 Score=244.81 Aligned_cols=169 Identities=27% Similarity=0.311 Sum_probs=156.1
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhc-CCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCc-----c--cccchHHHH
Q 006072 412 DGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN-----V--EEAGSFLCT 483 (662)
Q Consensus 412 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~--~~~~~~l~~ 483 (662)
.|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|+++. . ..|.||||.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 589999999999999999999998 99999999999999999999999999999999998762 2 358899999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCC-------------CCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHH
Q 006072 484 AVARGDSDLLKRVLSNGIDPNTRDY-------------DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEG 550 (662)
Q Consensus 484 A~~~~~~~~v~~Ll~~g~~~~~~~~-------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 550 (662)
|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999998875 799999999999999999999999999999999999999999
Q ss_pred HHcCCHHHH----HHHHhcccccc------ccCCCCCccc
Q 006072 551 RMCGNKNLI----KLLEDAKSTQL------LEFPHGFQDT 580 (662)
Q Consensus 551 ~~~~~~~iv----~~Ll~~ga~~~------~~~~~~~~~~ 580 (662)
+..|+.+++ ++|+++|++.. ..+..|.++.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl 201 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPF 201 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHH
T ss_pred HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHH
Confidence 999999988 99999999873 5555555544
No 58
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=3.5e-29 Score=237.25 Aligned_cols=188 Identities=23% Similarity=0.456 Sum_probs=175.3
Q ss_pred CcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh-ccHhHHHhhchHHHHHHHHHHHHHHHhcccccccCCC
Q 006072 162 GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCS 240 (662)
Q Consensus 162 ~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~i~~~~~~~~~~~-~~~~~~l~~Lp~~L~~~i~~~~~~~~l~~~~~f~~~~ 240 (662)
+....+|+++++.+++||+.+++|..||.||++|++|.|+.. ++++++++.||+.||.++..+.+.++++++|+|.+++
T Consensus 5 ~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~ 84 (202)
T 3bpz_A 5 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFANAD 84 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCC
Confidence 456778999999999999999999999999999999999744 7789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEE
Q 006072 241 SEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV 320 (662)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a 320 (662)
++++..++..+++..|+||++|+++||.++++|||.+|.|+++. .+|+. ..+++|++|||.+++.+.+++++++|
T Consensus 85 ~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~---~~l~~G~~fGe~~~~~~~~~~~~v~a 159 (202)
T 3bpz_A 85 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKE---MKLSDGSYFGEICLLTRGRRTASVRA 159 (202)
T ss_dssp HHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCC---EEEETTCEECHHHHHHCSBCSSEEEE
T ss_pred HHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeE---EEEcCCCEeccHHHhcCCCcccEEEE
Confidence 99999999999999999999999999999999999999999874 44544 35899999999999999999999999
Q ss_pred ccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhc
Q 006072 321 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 354 (662)
Q Consensus 321 ~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~ 354 (662)
.++|+++.|++++|.+++..+|.....++..+.+
T Consensus 160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~ 193 (202)
T 3bpz_A 160 DTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID 193 (202)
T ss_dssp SSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred eeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999888877654
No 59
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=3.1e-30 Score=263.96 Aligned_cols=195 Identities=19% Similarity=0.205 Sum_probs=163.5
Q ss_pred hhHhHHhccCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCC--
Q 006072 382 LKVNSAAYHGDLYQLEGLIRAGADPNR-TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN-- 458 (662)
Q Consensus 382 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-- 458 (662)
..+|.|+..+..++++.|++.|+++|. +|..|.||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~ 178 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence 446888888889999999999999999 89999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHHHcC-CCCccc--ccchHHHHHHH----cCCHHHHHHHHHc--------------------CCCCCCCCCCC
Q 006072 459 -DGAASLLVKEG-ASLNVE--EAGSFLCTAVA----RGDSDLLKRVLSN--------------------GIDPNTRDYDL 510 (662)
Q Consensus 459 -~~~v~~Ll~~g-~~~~~~--~~~~~l~~A~~----~~~~~~v~~Ll~~--------------------g~~~~~~~~~g 510 (662)
.++++.|++.+ ++++.. .|.||||+|+. .|+.+++++|++. |++++.++..|
T Consensus 179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g 258 (327)
T 1sw6_A 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258 (327)
T ss_dssp HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence 78888888876 556654 58899999999 8999999999987 89999999999
Q ss_pred CcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCccccccC
Q 006072 511 RTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR 584 (662)
Q Consensus 511 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 584 (662)
.||||.|+. +++|+++ +++.+|..|+||||+|+..|+.+++++|+++|+++..++..|.++...+.
T Consensus 259 ~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 259 KDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp -CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred CChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 999999985 8999998 68889999999999999999999999999999999999999988876543
No 60
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=4.5e-29 Score=225.47 Aligned_cols=151 Identities=32% Similarity=0.409 Sum_probs=126.0
Q ss_pred hhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCH
Q 006072 380 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND 459 (662)
Q Consensus 380 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 459 (662)
..++|+.|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence 4578888888888888888888887766 467788888888888888888888888888888887788887777776666
Q ss_pred HHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCC
Q 006072 460 GAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPK 539 (662)
Q Consensus 460 ~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 539 (662)
+++++|+++ |++++.+|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 81 ~~v~~Ll~~-------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 129 (153)
T 1awc_B 81 NIVEVLLKH-------------------------------GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129 (153)
T ss_dssp HHHHHHHTT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHc-------------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 666655554 5567788889999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHcCCHHHHHHH
Q 006072 540 DRWGNTPLDEGRMCGNKNLIKLL 562 (662)
Q Consensus 540 d~~g~tpl~~A~~~~~~~iv~~L 562 (662)
|..|.||||+|+..|+.+++++|
T Consensus 130 ~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 130 SKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999987
No 61
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.9e-29 Score=231.09 Aligned_cols=160 Identities=34% Similarity=0.465 Sum_probs=133.2
Q ss_pred hhhhhhhhHhHHhccCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHH
Q 006072 376 HEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 454 (662)
Q Consensus 376 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 454 (662)
.+.++.++||.|+..|+.++++.|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 356678888888888888888888874 5567777788888888888888888888888888888888888888888887
Q ss_pred HhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCC
Q 006072 455 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 534 (662)
Q Consensus 455 ~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 534 (662)
..|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 84 ~~~~~~~v~~Ll~~-------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 132 (165)
T 3twr_A 84 SYGHYEVAELLVKH-------------------------------GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132 (165)
T ss_dssp HTTCHHHHHHHHHT-------------------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HcCcHHHHHHHHhC-------------------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 77766666666554 55677888899999999999999999999999999
Q ss_pred CCCCCCCCCCChHHHHHHcCCHHHHHHHHhccc
Q 006072 535 SVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 567 (662)
Q Consensus 535 ~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga 567 (662)
+++.+|..|.||||+|+. |+.+++++|+++||
T Consensus 133 ~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 133 DPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 999999999999999877 99999999999886
No 62
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=2.4e-29 Score=233.74 Aligned_cols=166 Identities=25% Similarity=0.260 Sum_probs=129.2
Q ss_pred hhhhhhHhHHhccCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHh
Q 006072 378 AELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKY 456 (662)
Q Consensus 378 ~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 456 (662)
.++.++|+.||..|+.++++.|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 3456777777777777777777776 556777777777777777777777777777777777777777777777777766
Q ss_pred CCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCC
Q 006072 457 GNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 536 (662)
Q Consensus 457 ~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 536 (662)
|+.+++++|++ +|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 83 ~~~~~v~~Ll~-------------------------------~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 131 (179)
T 3f6q_A 83 GHRDIVQKLLQ-------------------------------YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131 (179)
T ss_dssp TCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHH-------------------------------cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 66665555555 45567778888999999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCC
Q 006072 537 FPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFP 574 (662)
Q Consensus 537 ~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~ 574 (662)
+.+|..|.|||++|+..++.+++++|+++|++......
T Consensus 132 ~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~ 169 (179)
T 3f6q_A 132 SICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPY 169 (179)
T ss_dssp SBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCC
T ss_pred chhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCc
Confidence 99999999999999999999999999999988765443
No 63
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=1.1e-29 Score=238.91 Aligned_cols=165 Identities=24% Similarity=0.285 Sum_probs=157.3
Q ss_pred cccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCc
Q 006072 369 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNT 448 (662)
Q Consensus 369 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 448 (662)
.+...+..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.|
T Consensus 24 ~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 103 (192)
T 2rfm_A 24 LDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT 103 (192)
T ss_dssp HHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred hHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence 34455667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCcccc--cchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHH
Q 006072 449 PLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMA 526 (662)
Q Consensus 449 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 526 (662)
|||+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v 183 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence 9999999999999999999999998764 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCC
Q 006072 527 KLLVEAG 533 (662)
Q Consensus 527 ~~Ll~~g 533 (662)
++|+++|
T Consensus 184 ~~Ll~~~ 190 (192)
T 2rfm_A 184 KIFTEVR 190 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9999875
No 64
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=5.2e-30 Score=262.27 Aligned_cols=176 Identities=20% Similarity=0.184 Sum_probs=153.9
Q ss_pred cccch-hhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCc---HHHHHHHHhcC-CCCcccCCC
Q 006072 371 FHISK-HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY---EEIMTFLIQKG-VDINLKDNF 445 (662)
Q Consensus 371 ~~~~~-~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g-~~~~~~~~~ 445 (662)
.+++. .+..|.||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+ .++++.|++.+ ++++.+|..
T Consensus 121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~ 200 (327)
T 1sw6_A 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM 200 (327)
T ss_dssp CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTT
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCC
Confidence 44555 68889999999999999999999999999999999999999999999998 78888888876 789999999
Q ss_pred CCcHHHHHHH----hCCHHHHHHHHHc--------------------CCCCcccc--cchHHHHHHHcCCHHHHHHHHHc
Q 006072 446 GNTPLLEAIK----YGNDGAASLLVKE--------------------GASLNVEE--AGSFLCTAVARGDSDLLKRVLSN 499 (662)
Q Consensus 446 g~t~L~~A~~----~~~~~~v~~Ll~~--------------------g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~ 499 (662)
|.||||+|+. .|+.+++++|++. |++++..+ |.||||.|+. +++|+++
T Consensus 201 g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~ 274 (327)
T 1sw6_A 201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN 274 (327)
T ss_dssp CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH
T ss_pred CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh
Confidence 9999999999 8999999999987 77777654 7899999985 8999998
Q ss_pred CCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcC
Q 006072 500 GIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG 554 (662)
Q Consensus 500 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~ 554 (662)
++|.+|..|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+.+|
T Consensus 275 --~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 275 --MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp --TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred --CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999998765
No 65
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=3.8e-28 Score=230.22 Aligned_cols=171 Identities=25% Similarity=0.248 Sum_probs=161.3
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhcCC-CCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccc--cchHHHHHHHc
Q 006072 411 YDGRSPLHLAASRGYEEIMTFLIQKGV-DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVAR 487 (662)
Q Consensus 411 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~ 487 (662)
..+.||||.|+..|+.+.++.|+..+. +++..|..|.||||+|+..|+.+++++|+++|++++..+ |.||||.|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 568899999999999999999999876 999999999999999999999999999999999998765 78999999999
Q ss_pred CCHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCC-CCCCCCCCCCCChHHHHHHcCC-----HHHHH
Q 006072 488 GDSDLLKRVL-SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG-ASVFPKDRWGNTPLDEGRMCGN-----KNLIK 560 (662)
Q Consensus 488 ~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~-----~~iv~ 560 (662)
|+.+++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 9999999999 667899999999999999999999999999999999 9999999999999999999998 99999
Q ss_pred HHHhccccccccCCCCCcccc
Q 006072 561 LLEDAKSTQLLEFPHGFQDTA 581 (662)
Q Consensus 561 ~Ll~~ga~~~~~~~~~~~~~~ 581 (662)
+|+++|+++...+..|.++..
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~ 183 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMD 183 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHH
T ss_pred HHHHCCCCCCccCCCCCCHHH
Confidence 999999999998888877654
No 66
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=2.9e-29 Score=247.68 Aligned_cols=170 Identities=22% Similarity=0.219 Sum_probs=156.9
Q ss_pred CCCcHHHHHHHcCcHH----HHHHHHhcCCCCcc----cCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCCcc------
Q 006072 412 DGRSPLHLAASRGYEE----IMTFLIQKGVDINL----KDNFGNTPLLEAIKY---GNDGAASLLVKEGASLNV------ 474 (662)
Q Consensus 412 ~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~------ 474 (662)
.|.||||.|+..|+.+ ++++|+++|++++. .|..|.||||+|+.. |+.+++++|++.|++++.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 3789999999999997 66777889999998 899999999999999 999999999999987653
Q ss_pred -------cccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-------------CCcHHHHHHHhCcHHHHHHHHH---
Q 006072 475 -------EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYD-------------LRTPLHVAASEGLYLMAKLLVE--- 531 (662)
Q Consensus 475 -------~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-------------g~t~L~~A~~~~~~~~v~~Ll~--- 531 (662)
..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 34899999999999999999999999999999886 9999999999999999999999
Q ss_pred CCCCCCCCCCCCCChHHHHHH--cCCHH-------HHHHHHhccccc-------cccCCCCCcccc
Q 006072 532 AGASVFPKDRWGNTPLDEGRM--CGNKN-------LIKLLEDAKSTQ-------LLEFPHGFQDTA 581 (662)
Q Consensus 532 ~ga~~~~~d~~g~tpl~~A~~--~~~~~-------iv~~Ll~~ga~~-------~~~~~~~~~~~~ 581 (662)
+|++++.+|..|+||||+|+. .++.+ ++++|+++|+++ ...+..|.++..
T Consensus 161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~ 226 (256)
T 2etb_A 161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK 226 (256)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHH
T ss_pred cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHH
Confidence 999999999999999999999 88888 999999999999 777777766654
No 67
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.7e-32 Score=260.98 Aligned_cols=185 Identities=20% Similarity=0.214 Sum_probs=170.6
Q ss_pred chhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHH
Q 006072 374 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEA 453 (662)
Q Consensus 374 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 453 (662)
+..+..+.||||.|+..|+.++++.|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A 94 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA 94 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHcCCCCccc---ccchHHHHH--HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHH
Q 006072 454 IKYGNDGAASLLVKEGASLNVE---EAGSFLCTA--VARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKL 528 (662)
Q Consensus 454 ~~~~~~~~v~~Ll~~g~~~~~~---~~~~~l~~A--~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 528 (662)
+..|+.+++++|++.|++++.. +|.||||+| +..|+.+++++|+++|++++..|..|.||++.++..+. .++
T Consensus 95 ~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---~~~ 171 (229)
T 2vge_A 95 ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DEL 171 (229)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---TBC
T ss_pred HHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---ccc
Confidence 9999999999999999999864 688999999 99999999999999999999999999999997665543 367
Q ss_pred HHHCCCC--CCCCCCCCCChHHHHHHcCCHHHHHH
Q 006072 529 LVEAGAS--VFPKDRWGNTPLDEGRMCGNKNLIKL 561 (662)
Q Consensus 529 Ll~~ga~--~~~~d~~g~tpl~~A~~~~~~~iv~~ 561 (662)
|++.|++ ++.+|..|+||||+|+..|+.++|+-
T Consensus 172 ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 172 SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp CBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred CccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 8899998 77889999999999999999998865
No 68
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=3.4e-28 Score=220.45 Aligned_cols=153 Identities=25% Similarity=0.397 Sum_probs=127.0
Q ss_pred hhhhHhHHhccCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCC
Q 006072 380 LALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458 (662)
Q Consensus 380 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 458 (662)
+.++||.|+..|+.++++.|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 46788888888888888888877 34777778888888888 77888888888888888888888878888777777666
Q ss_pred HHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCC
Q 006072 459 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 538 (662)
Q Consensus 459 ~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 538 (662)
.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|+++ ++++.
T Consensus 81 ~~~v~~Ll~~-------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~ 128 (156)
T 1bd8_A 81 LDTLKVLVEH-------------------------------GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR 128 (156)
T ss_dssp HHHHHHHHHT-------------------------------TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC
T ss_pred HHHHHHHHHc-------------------------------CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC
Confidence 6666655554 556778888899999999999999999999999 99999
Q ss_pred CCCCCCChHHHHHHcCCHHHHHHHHhc
Q 006072 539 KDRWGNTPLDEGRMCGNKNLIKLLEDA 565 (662)
Q Consensus 539 ~d~~g~tpl~~A~~~~~~~iv~~Ll~~ 565 (662)
+|..|.||||+|+..|+.+++++|+++
T Consensus 129 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 129 RDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999999999999999875
No 69
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=4.8e-29 Score=248.68 Aligned_cols=206 Identities=18% Similarity=0.211 Sum_probs=164.7
Q ss_pred hcHHHHHHHHhcCCcchhhhhhhcCc--cccccc----hhhhhhhhhHhHHhcc---CCHHHHHHHHHcCCCC-------
Q 006072 343 CDGRKVLTNLLQGKESDLRLKQLQSD--ITFHIS----KHEAELALKVNSAAYH---GDLYQLEGLIRAGADP------- 406 (662)
Q Consensus 343 ~~~~~il~~l~~~~~~~~~~~~l~~d--~~~~~~----~~~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~------- 406 (662)
..+...+..++..++...+..+++.. ....++ ..+..|.||||.|+.. |+.+++++|++.|+++
T Consensus 11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i 90 (273)
T 2pnn_A 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV 90 (273)
T ss_dssp CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence 34556677777777776666555531 122222 3477899999999987 9999999999987652
Q ss_pred C----CCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCC--------------CCCcHHHHHHHhCCHHHHHHHHH-
Q 006072 407 N----RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN--------------FGNTPLLEAIKYGNDGAASLLVK- 467 (662)
Q Consensus 407 ~----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------------~g~t~L~~A~~~~~~~~v~~Ll~- 467 (662)
+ ..|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++
T Consensus 91 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 170 (273)
T 2pnn_A 91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170 (273)
T ss_dssp TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred hcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 2 2567899999999999999999999999999999987 79999999999999999999999
Q ss_pred --cCCCCccc--ccchHHHHHHHcCC---------HHHHHHHHHcCCCCC-------CCCCCCCcHHHHHHHhCcHHHHH
Q 006072 468 --EGASLNVE--EAGSFLCTAVARGD---------SDLLKRVLSNGIDPN-------TRDYDLRTPLHVAASEGLYLMAK 527 (662)
Q Consensus 468 --~g~~~~~~--~~~~~l~~A~~~~~---------~~~v~~Ll~~g~~~~-------~~~~~g~t~L~~A~~~~~~~~v~ 527 (662)
.|++++.. .|.||||+|+..|+ .+++++|+++|+++| .+|..|.||||+|+..|+.++++
T Consensus 171 ~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~ 250 (273)
T 2pnn_A 171 SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA 250 (273)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHH
Confidence 99999876 48899999999998 899999999999997 48999999999999999999999
Q ss_pred HHHHCCC-CCCCCCCCCCChHH
Q 006072 528 LLVEAGA-SVFPKDRWGNTPLD 548 (662)
Q Consensus 528 ~Ll~~ga-~~~~~d~~g~tpl~ 548 (662)
+|+++|| |+......+.+|-+
T Consensus 251 ~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 251 YILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHHHHHTC--------------
T ss_pred HHHHCCCCCchhhhhhhhhccC
Confidence 9999999 88888877777643
No 70
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=1.6e-27 Score=217.91 Aligned_cols=156 Identities=34% Similarity=0.463 Sum_probs=131.6
Q ss_pred HHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 006072 350 TNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIM 429 (662)
Q Consensus 350 ~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 429 (662)
..+.++++...+..+++...+ ++..+..|.||||.|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++
T Consensus 9 ~~Aa~~G~~~~v~~Ll~~Gad--vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v 86 (169)
T 4gpm_A 9 IEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV 86 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHH
Confidence 345566777777777776544 455678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 006072 430 TFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYD 509 (662)
Q Consensus 430 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 509 (662)
++|+++|+++|.+|..|+||||+|+..|+.+++++|+++| ++++.+|..
T Consensus 87 ~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-------------------------------ad~~~~d~~ 135 (169)
T 4gpm_A 87 KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG-------------------------------ADVNTSDSD 135 (169)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-------------------------------CCTTCCCTT
T ss_pred HHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-------------------------------CCccccCCC
Confidence 9999999999999999999999999888777776666655 466788888
Q ss_pred CCcHHHHHHHhCcHHHHHHHHHCCCCCCC
Q 006072 510 LRTPLHVAASEGLYLMAKLLVEAGASVFP 538 (662)
Q Consensus 510 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 538 (662)
|+||||+|+..|+.+++++|+++||+++.
T Consensus 136 G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 136 GRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 99999999999999999999999999865
No 71
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=7.5e-29 Score=241.84 Aligned_cols=162 Identities=23% Similarity=0.159 Sum_probs=84.6
Q ss_pred hhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCC
Q 006072 379 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458 (662)
Q Consensus 379 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 458 (662)
.|.||||.|+..|+.+.++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~ 82 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH 82 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 4566777777777777777777766666643 556677777777777777777777666666666666666666666666
Q ss_pred HHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCC
Q 006072 459 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 538 (662)
Q Consensus 459 ~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 538 (662)
.+++++|+++| +++|.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 83 ~~~v~~Ll~~g-------------------------------a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 131 (239)
T 1ycs_B 83 TEIVKFLVQFG-------------------------------VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131 (239)
T ss_dssp HHHHHHHHHHT-------------------------------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHcC-------------------------------CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce
Confidence 66665555555 45556666666666666666666666666666666666
Q ss_pred CCCCCC-ChHHHH--HHcCCHHHHHHHHhcccccccc
Q 006072 539 KDRWGN-TPLDEG--RMCGNKNLIKLLEDAKSTQLLE 572 (662)
Q Consensus 539 ~d~~g~-tpl~~A--~~~~~~~iv~~Ll~~ga~~~~~ 572 (662)
+|..|. ||||+| +..|+.+++++|+++|++....
T Consensus 132 ~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~ 168 (239)
T 1ycs_B 132 MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM 168 (239)
T ss_dssp CCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTT
T ss_pred ecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccccc
Confidence 665555 666666 5566666666666666665543
No 72
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=5.1e-28 Score=239.39 Aligned_cols=193 Identities=19% Similarity=0.218 Sum_probs=160.9
Q ss_pred HHHHHHHhcCCcchhhhhhhc----Cccccccc--hhhhhhhhhHhHHh---ccCCHHHHHHHHHcCCC-----------
Q 006072 346 RKVLTNLLQGKESDLRLKQLQ----SDITFHIS--KHEAELALKVNSAA---YHGDLYQLEGLIRAGAD----------- 405 (662)
Q Consensus 346 ~~il~~l~~~~~~~~~~~~l~----~d~~~~~~--~~~~~~~~~L~~A~---~~g~~~~v~~Ll~~g~~----------- 405 (662)
+..+..++..++...+...++ .....+.. ..+..|.||||.|+ ..|+.+++++|++.|++
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 85 (260)
T 3jxi_A 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP 85 (260)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence 344455555555554443433 22222222 23477999999999 77999999999998744
Q ss_pred CCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccC--------------CCCCcHHHHHHHhCCHHHHHHHHH---c
Q 006072 406 PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD--------------NFGNTPLLEAIKYGNDGAASLLVK---E 468 (662)
Q Consensus 406 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------~~g~t~L~~A~~~~~~~~v~~Ll~---~ 468 (662)
.+..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++ +
T Consensus 86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 165 (260)
T 3jxi_A 86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165 (260)
T ss_dssp BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 34455689999999999999999999999999999998 689999999999999999999999 9
Q ss_pred CCCCcccc--cchHHHHHHHcCC---------HHHHHHHHHcCCCC-------CCCCCCCCcHHHHHHHhCcHHHHHHHH
Q 006072 469 GASLNVEE--AGSFLCTAVARGD---------SDLLKRVLSNGIDP-------NTRDYDLRTPLHVAASEGLYLMAKLLV 530 (662)
Q Consensus 469 g~~~~~~~--~~~~l~~A~~~~~---------~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll 530 (662)
|++++..+ |.||||+|+..++ .+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+
T Consensus 166 ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 245 (260)
T 3jxi_A 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245 (260)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99998764 8899999999888 79999999999998 679999999999999999999999999
Q ss_pred HCCCCCCC
Q 006072 531 EAGASVFP 538 (662)
Q Consensus 531 ~~ga~~~~ 538 (662)
++|++...
T Consensus 246 ~~g~~~~~ 253 (260)
T 3jxi_A 246 RREIADAA 253 (260)
T ss_dssp HHHHHHHC
T ss_pred HhCCCccc
Confidence 99977543
No 73
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=4.7e-28 Score=236.16 Aligned_cols=139 Identities=22% Similarity=0.251 Sum_probs=95.9
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCCCCccc-ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcH
Q 006072 445 FGNTPLLEAIKYGNDGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY 523 (662)
Q Consensus 445 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 523 (662)
.|.||||.|+..++.+.++.|+++|++++.. .+.||||.|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~ 83 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT 83 (239)
T ss_dssp ---------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 4666666666666666666666666666543 246777777777777778888888889999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCC-cccccc
Q 006072 524 LMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGF-QDTADK 583 (662)
Q Consensus 524 ~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~-~~~~~~ 583 (662)
+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++....+..+. ++....
T Consensus 84 ~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a 144 (239)
T 1ycs_B 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 144 (239)
T ss_dssp HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHH
Confidence 999999999999999999999999999999999999999999999998887776 655533
No 74
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.95 E-value=5.7e-28 Score=224.80 Aligned_cols=168 Identities=22% Similarity=0.285 Sum_probs=146.3
Q ss_pred hhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCcH----HHHHHHHhcCCCCcccCCCCCcHHHH
Q 006072 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYE----EIMTFLIQKGVDINLKDNFGNTPLLE 452 (662)
Q Consensus 378 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~ 452 (662)
..+.++|+.|+..|+.+.++.+++.+. +..+ ..|+||||+|+.+|+. +++++|+++|+++|.+|..|+||||+
T Consensus 4 ~~~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~ 81 (186)
T 3t8k_A 4 MSEYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFP 81 (186)
T ss_dssp HHHCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHH
T ss_pred cccccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 345689999999999999999998774 4445 6799999999999975 59999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHh-----CcHHHH
Q 006072 453 AIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLR-TPLHVAASE-----GLYLMA 526 (662)
Q Consensus 453 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~-----~~~~~v 526 (662)
|+..++.++.+ ..+++++|+++|+++|.+|..|. ||||+|+.. ++.+++
T Consensus 82 a~~~~~~~~~~-------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv 136 (186)
T 3t8k_A 82 LFQGGGNDITG-------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLY 136 (186)
T ss_dssp HHHHCTTCHHH-------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHH
T ss_pred HHHcCCcchhh-------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHH
Confidence 99988765432 24788889999999999999999 999999984 456799
Q ss_pred HHHHH-CCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhcccccccc
Q 006072 527 KLLVE-AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLE 572 (662)
Q Consensus 527 ~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~ 572 (662)
++|++ +|+|++.+|..|+||||+|+..|+.+++++|++...+...+
T Consensus 137 ~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 137 KLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp HHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 99999 99999999999999999999999999999999887655443
No 75
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=236.64 Aligned_cols=164 Identities=21% Similarity=0.264 Sum_probs=155.0
Q ss_pred ccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHH-----HcCcHHHHHHHHhcCCCCcccC
Q 006072 370 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAA-----SRGYEEIMTFLIQKGVDINLKD 443 (662)
Q Consensus 370 ~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~ 443 (662)
...++..|..|.||||.|+..|+.+++++|++.|+ +++..+..|.||||+|+ ..++.+++++|++.|.+++..+
T Consensus 101 ~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~ 180 (276)
T 4hbd_A 101 DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKAS 180 (276)
T ss_dssp HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCT
T ss_pred hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccC
Confidence 33466778899999999999999999999999998 99999999999999999 6789999999999999999999
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHcCCCCccc--ccchHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHh
Q 006072 444 NFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLS-NGIDPNTRDYDLRTPLHVAASE 520 (662)
Q Consensus 444 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~ 520 (662)
..|.||||+|+..|+.+++++|+++|++++.. +|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..
T Consensus 181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~ 260 (276)
T 4hbd_A 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDA 260 (276)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHc
Confidence 99999999999999999999999999999875 48899999999999999999999 8999999999999999999999
Q ss_pred CcHHHHHHHHHCC
Q 006072 521 GLYLMAKLLVEAG 533 (662)
Q Consensus 521 ~~~~~v~~Ll~~g 533 (662)
|+.+++++|++++
T Consensus 261 g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 261 GQSEIASMLYSRM 273 (276)
T ss_dssp TCHHHHHHHHHHC
T ss_pred CCHHHHHHHHhcc
Confidence 9999999999874
No 76
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=4.1e-27 Score=207.87 Aligned_cols=134 Identities=30% Similarity=0.443 Sum_probs=111.3
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHH
Q 006072 403 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLC 482 (662)
Q Consensus 403 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~ 482 (662)
+++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-------------- 66 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLH-------------- 66 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH--------------
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC--------------
Confidence 45677778888888888888888888888888888888888888888887777 766666666555
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHH
Q 006072 483 TAVARGDSDLLKRVLSNGIDPNTRDYD-LRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKL 561 (662)
Q Consensus 483 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~ 561 (662)
|++++.+|.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++
T Consensus 67 -----------------g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~ 129 (136)
T 1d9s_A 67 -----------------GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129 (136)
T ss_dssp -----------------TCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred -----------------CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence 4566777777 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccc
Q 006072 562 LEDAKST 568 (662)
Q Consensus 562 Ll~~ga~ 568 (662)
|+++|||
T Consensus 130 Ll~~Gad 136 (136)
T 1d9s_A 130 LHAATGD 136 (136)
T ss_dssp HHHHHCC
T ss_pred HHHcCCC
Confidence 9999885
No 77
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=7.1e-28 Score=232.70 Aligned_cols=186 Identities=18% Similarity=0.064 Sum_probs=158.6
Q ss_pred HHHHHHcCCCCCCC---CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCC
Q 006072 396 LEGLIRAGADPNRT---DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASL 472 (662)
Q Consensus 396 v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 472 (662)
++.|+++|++++.. +.+|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++.|+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 46788999887654 456778899999999999999999999999999999999999999999999999999999999
Q ss_pred cccc--cchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHH--HHhCcHHHHHHHHHCCCCCCCCCCCCCChH
Q 006072 473 NVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVA--ASEGLYLMAKLLVEAGASVFPKDRWGNTPL 547 (662)
Q Consensus 473 ~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A--~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl 547 (662)
+..+ |.||||+|+..|+.+++++|+++|++++..+ ..|.||||+| +..|+.+++++|+++|++++.+|..|.||+
T Consensus 81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l 160 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160 (229)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence 8764 8899999999999999999999999999987 6999999999 999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcccc--ccccCCCCCccccccC
Q 006072 548 DEGRMCGNKNLIKLLEDAKST--QLLEFPHGFQDTADKR 584 (662)
Q Consensus 548 ~~A~~~~~~~iv~~Ll~~ga~--~~~~~~~~~~~~~~~~ 584 (662)
+.++..+. .++|++.|++ ...++..|.++...+.
T Consensus 161 ~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~ 196 (229)
T 2vge_A 161 WDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAA 196 (229)
T ss_dssp SCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEE
T ss_pred HHHhhccc---cccCccccccccccccCCCcccHHHHHH
Confidence 96655543 3688999998 5567777888776443
No 78
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=1.6e-26 Score=209.41 Aligned_cols=142 Identities=23% Similarity=0.229 Sum_probs=85.9
Q ss_pred CCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccc--cch-HHHH
Q 006072 407 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGS-FLCT 483 (662)
Q Consensus 407 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~-~l~~ 483 (662)
+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++..+ |.| |||+
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD 84 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 344566777777777777777777777777777777777777777764 666777777666666555443 444 5666
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHH
Q 006072 484 AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDE 549 (662)
Q Consensus 484 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 549 (662)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||.+-
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG 150 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence 666666666666666666777777777777777777777777777777777777777777777653
No 79
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=1.3e-24 Score=188.87 Aligned_cols=126 Identities=44% Similarity=0.646 Sum_probs=102.0
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHH
Q 006072 412 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSD 491 (662)
Q Consensus 412 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~ 491 (662)
+|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----------------------- 57 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA----------------------- 57 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-----------------------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHc-----------------------
Confidence 467777777777777777777777777777777777777777766666655555554
Q ss_pred HHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhcccc
Q 006072 492 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 568 (662)
Q Consensus 492 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~ 568 (662)
|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++||+
T Consensus 58 --------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 58 --------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp --------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred --------CCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 456677788889999999999999999999999999999999999999999999999999999998875
No 80
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=8.7e-25 Score=192.88 Aligned_cols=125 Identities=34% Similarity=0.460 Sum_probs=89.0
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCH
Q 006072 411 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS 490 (662)
Q Consensus 411 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~ 490 (662)
..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------------------- 69 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN---------------------- 69 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT----------------------
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc----------------------
Confidence 4456667777777777777777776666666666666666666665555555554444
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhcc
Q 006072 491 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK 566 (662)
Q Consensus 491 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g 566 (662)
|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 70 ---------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 70 ---------GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp ---------TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred ---------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 4455666777788888888888888888888888888888888888888888888888888887765
No 81
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.92 E-value=4.4e-27 Score=242.76 Aligned_cols=186 Identities=15% Similarity=0.031 Sum_probs=145.4
Q ss_pred hhhhhhhhHhHHhccCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCC---cccCCCCCcH
Q 006072 376 HEAELALKVNSAAYHGDLYQLEGLIRAGADP---NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI---NLKDNFGNTP 449 (662)
Q Consensus 376 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~ 449 (662)
.+.++.||||.|+..|+.++|++|++.|+.. +..+..|.||||+||..|+.+++++|+++|+++ +..+.+ .||
T Consensus 88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA 166 (376)
T ss_dssp HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence 3445569999999999999999999988732 234456788999999999999999999999762 222222 899
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCcc--c--ccchHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHH
Q 006072 450 LLEAIKYGNDGAASLLVKEGASLNV--E--EAGSFLCTAV-ARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYL 524 (662)
Q Consensus 450 L~~A~~~~~~~~v~~Ll~~g~~~~~--~--~~~~~l~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 524 (662)
||+|+..|+.+++++|+++|++++. . .|.||||.|+ ..|+.+++++|+++|++ |.||||+|+..|+.+
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~e 239 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKY 239 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTT
T ss_pred HHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHH
Confidence 9999999999999999999988654 3 4789999999 99999999999987742 789999999999999
Q ss_pred HHHHHHHCCCCCC-------------------------------------------------------------CCCCCC
Q 006072 525 MAKLLVEAGASVF-------------------------------------------------------------PKDRWG 543 (662)
Q Consensus 525 ~v~~Ll~~ga~~~-------------------------------------------------------------~~d~~g 543 (662)
++++|+++|++++ .....+
T Consensus 240 vv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~ 319 (376)
T 2aja_A 240 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA 319 (376)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCC
T ss_pred HHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCc
Confidence 9998888765421 112346
Q ss_pred CChHHHHHHcCCHHHHHHHHhccccc
Q 006072 544 NTPLDEGRMCGNKNLIKLLEDAKSTQ 569 (662)
Q Consensus 544 ~tpl~~A~~~~~~~iv~~Ll~~ga~~ 569 (662)
.||||+|+..|+.+++++|++.|+..
T Consensus 320 ~~~L~~A~~~g~~e~v~lLl~~~~v~ 345 (376)
T 2aja_A 320 NELLRLALRLGNQGACALLLSIPSVL 345 (376)
T ss_dssp CHHHHHHHHHTCTTHHHHHTTSHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHcChHHH
Confidence 68899999999999999999887543
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=2.5e-25 Score=196.41 Aligned_cols=132 Identities=24% Similarity=0.314 Sum_probs=118.4
Q ss_pred ccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCC-CCcHH
Q 006072 372 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF-GNTPL 450 (662)
Q Consensus 372 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~L 450 (662)
+++..+..+.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+. |+.+++++|+++|++++.+|.. |.|||
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV 82 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence 345667788999999999999999999999999999999999999999999 9999999999999999999999 89999
Q ss_pred HHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHH
Q 006072 451 LEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV 530 (662)
Q Consensus 451 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 530 (662)
|+|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~g-------------------------------a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll 131 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAG-------------------------------ARLDVCDAWGRLPVDLAEEQGHRDIARYLH 131 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTC-------------------------------CCCCCCSSSSSCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcC-------------------------------CCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9998888777777666655 466777888999999999999999999999
Q ss_pred HCCCC
Q 006072 531 EAGAS 535 (662)
Q Consensus 531 ~~ga~ 535 (662)
++|||
T Consensus 132 ~~Gad 136 (136)
T 1d9s_A 132 AATGD 136 (136)
T ss_dssp HHHCC
T ss_pred HcCCC
Confidence 98886
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=2.9e-25 Score=201.03 Aligned_cols=141 Identities=23% Similarity=0.267 Sum_probs=118.2
Q ss_pred CcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccc--ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc-HHH
Q 006072 439 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRT-PLH 515 (662)
Q Consensus 439 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~ 515 (662)
.+..+..|.||||+|+..|+.+++++|+++|++++.. .|.||||+|+ .|+.+++++|+++|++++.+|..|.| |||
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH 83 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 3456778999999999999999999999999998875 4889999985 99999999999999999999999999 999
Q ss_pred HHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCCCccc
Q 006072 516 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDT 580 (662)
Q Consensus 516 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~ 580 (662)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++...+..|.++.
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~ 148 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAA 148 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------
T ss_pred HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccc
Confidence 99999999999999999999999999999999999999999999999999999998888776654
No 84
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.92 E-value=1.7e-24 Score=198.50 Aligned_cols=139 Identities=24% Similarity=0.311 Sum_probs=118.6
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHH
Q 006072 412 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSD 491 (662)
Q Consensus 412 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~ 491 (662)
.|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------------------- 58 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN----------------------- 58 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------------------
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-----------------------
Confidence 467788888888888888888888878887777777777777776666666655554
Q ss_pred HHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccc
Q 006072 492 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL 571 (662)
Q Consensus 492 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~ 571 (662)
|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++..
T Consensus 59 --------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 130 (167)
T 3v31_A 59 --------GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130 (167)
T ss_dssp --------TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred --------CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 456677888999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCcccc
Q 006072 572 EFPHGFQDTA 581 (662)
Q Consensus 572 ~~~~~~~~~~ 581 (662)
.+..|.++..
T Consensus 131 ~~~~g~t~l~ 140 (167)
T 3v31_A 131 ETDSGYNSMD 140 (167)
T ss_dssp CCTTSCCHHH
T ss_pred cCCCCCCHHH
Confidence 8887766554
No 85
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.92 E-value=3.5e-25 Score=195.69 Aligned_cols=134 Identities=36% Similarity=0.453 Sum_probs=103.5
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHH
Q 006072 403 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLC 482 (662)
Q Consensus 403 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~ 482 (662)
|+|+ .+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------------- 65 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-------------- 65 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--------------
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc--------------
Confidence 4566 5677788888888888888888888888888887777777777777776666666655554
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHH
Q 006072 483 TAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 562 (662)
Q Consensus 483 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~L 562 (662)
|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..++.+++++|
T Consensus 66 -----------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 66 -----------------KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp -----------------TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred -----------------CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence 456777888899999999999999999999999999999999999999999999999998888
Q ss_pred Hhcccc
Q 006072 563 EDAKST 568 (662)
Q Consensus 563 l~~ga~ 568 (662)
.+.++.
T Consensus 129 ~~~~~s 134 (137)
T 3c5r_A 129 EKNESS 134 (137)
T ss_dssp ------
T ss_pred cccccC
Confidence 877654
No 86
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.91 E-value=4.2e-24 Score=194.73 Aligned_cols=155 Identities=25% Similarity=0.292 Sum_probs=130.0
Q ss_pred HHHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHH
Q 006072 348 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE 427 (662)
Q Consensus 348 il~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 427 (662)
.+..+...++.......++... +++..+..+.||||.|+. |+.+++++|++.|++++.++..|.||||+|+..|+.+
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 84 (162)
T 1ihb_A 8 ELASAAARGDLEQLTSLLQNNV--NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD 84 (162)
T ss_dssp HHHHHHHHTCHHHHHHHTTSCC--CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCC--CccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 3444455555555555555443 345567788999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 006072 428 IMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 507 (662)
Q Consensus 428 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~ 507 (662)
++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ +++..|
T Consensus 85 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------~~~~~~ 134 (162)
T 1ihb_A 85 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS------------------------------NVGHRN 134 (162)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC------------------------------CTTCCC
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC------------------------------CCCCcC
Confidence 99999999999999999999999999998888888888777664 246778
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHHCCCC
Q 006072 508 YDLRTPLHVAASEGLYLMAKLLVEAGAS 535 (662)
Q Consensus 508 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 535 (662)
..|.||||+|+..|+.+++++|+++|||
T Consensus 135 ~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 135 HKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 8899999999999999999999999986
No 87
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.91 E-value=4e-24 Score=196.35 Aligned_cols=140 Identities=29% Similarity=0.330 Sum_probs=118.5
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCH
Q 006072 411 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS 490 (662)
Q Consensus 411 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~ 490 (662)
..+.++|+.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------------------- 69 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN---------------------- 69 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----------------------
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----------------------
Confidence 4566788888888888888888888888887777777777777776666666555554
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhcccccc
Q 006072 491 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL 570 (662)
Q Consensus 491 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~ 570 (662)
|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus 70 ---------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 140 (169)
T 2y1l_E 70 ---------GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140 (169)
T ss_dssp ---------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ---------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 55677888899999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCcccc
Q 006072 571 LEFPHGFQDTA 581 (662)
Q Consensus 571 ~~~~~~~~~~~ 581 (662)
..+..|.++..
T Consensus 141 ~~~~~g~t~l~ 151 (169)
T 2y1l_E 141 AQDKFGKTAFD 151 (169)
T ss_dssp CCCTTSCCHHH
T ss_pred CcCCCCCCHHH
Confidence 88887776654
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=6.5e-24 Score=187.26 Aligned_cols=128 Identities=34% Similarity=0.420 Sum_probs=112.7
Q ss_pred hhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHH
Q 006072 375 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 454 (662)
Q Consensus 375 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 454 (662)
.....+.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCC
Q 006072 455 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 533 (662)
Q Consensus 455 ~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 533 (662)
..|+.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 89 ~~~~~~~v~~Ll~~g~-------------------------------~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGA-------------------------------DVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCC-------------------------------CCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 8887777777666554 66677888888999998888888888888876
No 89
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.91 E-value=2.1e-26 Score=237.65 Aligned_cols=179 Identities=13% Similarity=0.024 Sum_probs=155.4
Q ss_pred hhhhhHhHHhc-cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCC---cccCCCCCcHHHHHH
Q 006072 379 ELALKVNSAAY-HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI---NLKDNFGNTPLLEAI 454 (662)
Q Consensus 379 ~~~~~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~ 454 (662)
.+.++++.|.. .++.+.+++++++|.+ +.||||+|+..|+.+++++|+++|+.. +..+..|.||||+|+
T Consensus 64 ~~ll~~~~a~~~~~~~~~~~~l~~~g~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa 136 (376)
T 2aja_A 64 RQLLCLYYAHYNRNAKQLWSDAHKKGIK-------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 136 (376)
T ss_dssp HHHHHHHHHHTTTTCTTHHHHHHHHTCC-------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCC-------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence 35678888877 5889999999998765 459999999999999999999999832 234456789999999
Q ss_pred HhCCHHHHHHHHHcCCC-----CcccccchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCcHHHHHH-HhCcHHHH
Q 006072 455 KYGNDGAASLLVKEGAS-----LNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT--RDYDLRTPLHVAA-SEGLYLMA 526 (662)
Q Consensus 455 ~~~~~~~v~~Ll~~g~~-----~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~-~~~~~~~v 526 (662)
..|+.++|++|+++|++ ++..+ .||||.|+..|+.+++++|+++|++++. .|..|.||||+|+ ..|+.++|
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv 215 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 215 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence 99999999999999975 34444 8999999999999999999999999887 8888999999999 99999999
Q ss_pred HHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhcccccccc
Q 006072 527 KLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLE 572 (662)
Q Consensus 527 ~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~ 572 (662)
++|+++|++ |.|||++|+..|+.+++++|+++|++....
T Consensus 216 ~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~~~~ 254 (376)
T 2aja_A 216 NFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNRLKEM 254 (376)
T ss_dssp HHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCcccccc
Confidence 999998853 899999999999999999999999987544
No 90
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=1.9e-25 Score=208.04 Aligned_cols=140 Identities=24% Similarity=0.280 Sum_probs=89.9
Q ss_pred hhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccC-CCCCcHHHHHHH
Q 006072 377 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NFGNTPLLEAIK 455 (662)
Q Consensus 377 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~ 455 (662)
+..|.||||.|+..|+.++++.|++ |++++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~- 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA- 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH-
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH-
Confidence 3455555555555555555555555 55555555555555555555555555555555555555554 44555555554
Q ss_pred hCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCC
Q 006072 456 YGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535 (662)
Q Consensus 456 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 535 (662)
..|+.+++++|+++|++++.+|..|.||||+|+..++.
T Consensus 119 ------------------------------~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------ 156 (183)
T 3deo_A 119 ------------------------------GYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------ 156 (183)
T ss_dssp ------------------------------HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------
T ss_pred ------------------------------hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------
Confidence 45555555556666667788888999999999875433
Q ss_pred CCCCCCCCCChHHHHHHcCCHHHHHHHHhc
Q 006072 536 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 565 (662)
Q Consensus 536 ~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ 565 (662)
..+.+||++|+..|+.+++++|.++
T Consensus 157 -----~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 -----TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp -----CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred -----cccccHHHHHHHcCHHHHHHHHHHh
Confidence 3467899999999999999998765
No 91
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.91 E-value=7.7e-24 Score=193.60 Aligned_cols=143 Identities=29% Similarity=0.296 Sum_probs=114.6
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHh-cCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcC
Q 006072 410 DYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARG 488 (662)
Q Consensus 410 ~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~ 488 (662)
|..|.||||.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.++++
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~------------------------- 59 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE------------------------- 59 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHH-------------------------
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHH-------------------------
Confidence 4556677777777777777777766 34455566666666666666655555555
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhcccc
Q 006072 489 DSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 568 (662)
Q Consensus 489 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~ 568 (662)
+|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 60 ------~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 133 (165)
T 3twr_A 60 ------YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133 (165)
T ss_dssp ------HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ------HHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 45555667788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcccccc
Q 006072 569 QLLEFPHGFQDTADK 583 (662)
Q Consensus 569 ~~~~~~~~~~~~~~~ 583 (662)
+..++..|.++....
T Consensus 134 ~~~~~~~g~t~l~~a 148 (165)
T 3twr_A 134 PTKKNRDGNTPLDLV 148 (165)
T ss_dssp TTCCCTTSCCTGGGS
T ss_pred CcccCCCCCChhHhH
Confidence 999998888776543
No 92
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.91 E-value=1.5e-23 Score=194.42 Aligned_cols=141 Identities=21% Similarity=0.241 Sum_probs=114.4
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhc-CCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCC
Q 006072 411 YDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD 489 (662)
Q Consensus 411 ~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~ 489 (662)
..+.++||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---------------------- 60 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM---------------------- 60 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHH----------------------
Confidence 3466777777777777777777776 55677777777777777766666555555554
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccc
Q 006072 490 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 569 (662)
Q Consensus 490 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~ 569 (662)
+|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 61 ---------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 131 (179)
T 3f6q_A 61 ---------RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131 (179)
T ss_dssp ---------TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred ---------cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 55577788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccccc
Q 006072 570 LLEFPHGFQDTAD 582 (662)
Q Consensus 570 ~~~~~~~~~~~~~ 582 (662)
...+..|.++...
T Consensus 132 ~~~~~~g~tpl~~ 144 (179)
T 3f6q_A 132 SICNKYGEMPVDK 144 (179)
T ss_dssp SBCCTTSCCGGGG
T ss_pred chhccCCCCcHHH
Confidence 9998888776543
No 93
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.91 E-value=9.2e-24 Score=190.45 Aligned_cols=137 Identities=26% Similarity=0.311 Sum_probs=107.9
Q ss_pred CcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHH
Q 006072 414 RSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLL 493 (662)
Q Consensus 414 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v 493 (662)
.||||.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+ .+++
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~-------------------------------~~~v 50 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGH-------------------------------FSTT 50 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTC-------------------------------HHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCC-------------------------------HHHH
Confidence 355666666666666666666665554 34555555555555554 4555
Q ss_pred HHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccC
Q 006072 494 KRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEF 573 (662)
Q Consensus 494 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~ 573 (662)
++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++...+
T Consensus 51 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 130 (153)
T 1awc_B 51 EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130 (153)
T ss_dssp HHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 55555566778888999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCccccc
Q 006072 574 PHGFQDTAD 582 (662)
Q Consensus 574 ~~~~~~~~~ 582 (662)
..|.++...
T Consensus 131 ~~g~t~l~~ 139 (153)
T 1awc_B 131 KFCKTAFDI 139 (153)
T ss_dssp TTSCCHHHH
T ss_pred CCCCCHHHH
Confidence 888776543
No 94
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=1.4e-23 Score=182.25 Aligned_cols=126 Identities=44% Similarity=0.611 Sum_probs=113.8
Q ss_pred hhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCC
Q 006072 379 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458 (662)
Q Consensus 379 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 458 (662)
+|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCC
Q 006072 459 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535 (662)
Q Consensus 459 ~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 535 (662)
.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|+++|||
T Consensus 81 ~~~~~~Ll~~g~-------------------------------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAGA-------------------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCC-------------------------------CCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 777776666554 6667788889999999999999999999998886
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.90 E-value=1.4e-23 Score=205.01 Aligned_cols=144 Identities=24% Similarity=0.271 Sum_probs=102.7
Q ss_pred hhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccC-CCCCcHHHHHHH
Q 006072 377 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NFGNTPLLEAIK 455 (662)
Q Consensus 377 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~ 455 (662)
+.+|.||||.|+..|+.++++.|++ |+++|.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence 3456666666666666666666666 66666666666666666666666666666666666666665 556666666655
Q ss_pred hCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCC
Q 006072 456 YGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 535 (662)
Q Consensus 456 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 535 (662)
.|+.+ ++++|+++|++++.+|..|.||||+|+..++
T Consensus 121 ~g~~~-------------------------------~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~------------- 156 (244)
T 3ui2_A 121 YVRPE-------------------------------VVEALVELGADIEVEDERGLTALELAREILK------------- 156 (244)
T ss_dssp TTCHH-------------------------------HHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-------------
T ss_pred cCCHH-------------------------------HHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-------------
Confidence 55554 5555555566788889999999999986322
Q ss_pred CCCCCCCCCChHHHHHHcCCHHHHHHHHhccccc
Q 006072 536 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 569 (662)
Q Consensus 536 ~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~ 569 (662)
+..+.|||++|+..|+.+++++|++++.+.
T Consensus 157 ----~~~~~~~l~~a~~~g~~~iv~~L~~~~~~~ 186 (244)
T 3ui2_A 157 ----TTPKGNPMQFGRRIGLEKVINVLEGQVFEY 186 (244)
T ss_dssp ----TCCCSSHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred ----ccCCCCHHHHHHHcChHHHHHHHHHhcccc
Confidence 256899999999999999999999986653
No 96
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.90 E-value=5.5e-23 Score=185.96 Aligned_cols=151 Identities=25% Similarity=0.338 Sum_probs=127.7
Q ss_pred HHHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHH
Q 006072 348 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE 427 (662)
Q Consensus 348 il~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 427 (662)
.+..+...++.......++. ...+.+..+..|.||||. +..|+.+++++|++.|++++.+|..|.||||+|+..|+.+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 82 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD 82 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 34445555555555555555 334556677789999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 006072 428 IMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 507 (662)
Q Consensus 428 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~ 507 (662)
++++|+++|++++.+|..|.||||+|+..|+.+++++|++. + +++.+|
T Consensus 83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~-------------------------------~~~~~~ 130 (156)
T 1bd8_A 83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S-------------------------------DLHRRD 130 (156)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-S-------------------------------CTTCCC
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-c-------------------------------CCCCcC
Confidence 99999999999999999999999999998888888777765 4 566778
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHHC
Q 006072 508 YDLRTPLHVAASEGLYLMAKLLVEA 532 (662)
Q Consensus 508 ~~g~t~L~~A~~~~~~~~v~~Ll~~ 532 (662)
..|.||||+|+..|+.+++++|+++
T Consensus 131 ~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 131 ARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 8889999999999999999988864
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.89 E-value=3.2e-23 Score=208.43 Aligned_cols=138 Identities=18% Similarity=0.077 Sum_probs=98.2
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcCCCCcc------cCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCCccc--ccchHH
Q 006072 413 GRSPLHLAASRGYEEIMTFLIQKGVDINL------KDNFGNTPLLEAIKY---GNDGAASLLVKEGASLNVE--EAGSFL 481 (662)
Q Consensus 413 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~--~~~~~l 481 (662)
+.++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. ++.+++++|+++|++++.. +|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 44567777777777777777777776665 466667777777765 6667777777777666553 356666
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCH
Q 006072 482 CTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK 556 (662)
Q Consensus 482 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~ 556 (662)
|+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 777777777777777777888889999999999999999999999999999887 478999999988864
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=1.7e-23 Score=201.41 Aligned_cols=141 Identities=23% Similarity=0.245 Sum_probs=89.3
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCC
Q 006072 410 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD 489 (662)
Q Consensus 410 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~ 489 (662)
+..|.||||+||..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------------------- 128 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ--------------------- 128 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTS---------------------
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcC---------------------
Confidence 44566777777777777777777777777777777777777777766666665555554
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccc
Q 006072 490 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 569 (662)
Q Consensus 490 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~ 569 (662)
.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|++.|+..
T Consensus 129 ---------~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 129 ---------PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp ---------TTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred ---------CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 14466677777888888888888888888888888888888888888888888888888888888888887
Q ss_pred cccCCCCCccc
Q 006072 570 LLEFPHGFQDT 580 (662)
Q Consensus 570 ~~~~~~~~~~~ 580 (662)
...+..++...
T Consensus 200 ~~~~~~~~l~~ 210 (222)
T 3ehr_A 200 TLSNAEDYLDD 210 (222)
T ss_dssp -----------
T ss_pred hccchhhhccc
Confidence 77766665543
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=5.5e-23 Score=177.81 Aligned_cols=111 Identities=27% Similarity=0.227 Sum_probs=83.1
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCH
Q 006072 411 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS 490 (662)
Q Consensus 411 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~ 490 (662)
..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------------------- 62 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK---------------------- 62 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT----------------------
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHc----------------------
Confidence 4566777777777777777777777777777777777777777666665555555544
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHH
Q 006072 491 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRM 552 (662)
Q Consensus 491 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 552 (662)
|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+|+|..
T Consensus 63 ---------g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 63 ---------GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp ---------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred ---------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 45667778888888888888888888888888888888888888888888843
No 100
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=1.1e-22 Score=189.22 Aligned_cols=112 Identities=21% Similarity=0.165 Sum_probs=99.6
Q ss_pred hcHHHHHHHHhcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHH
Q 006072 343 CDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAA 421 (662)
Q Consensus 343 ~~~~~il~~l~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~ 421 (662)
..+...+..+...++.......++ ..+++..+..|.||||.|+..|+.+++++|++.|++++..+ ..|+||||+|+
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 455677788888888877777776 34556677889999999999999999999999999999998 89999999999
Q ss_pred HcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhC
Q 006072 422 SRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 457 (662)
Q Consensus 422 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 457 (662)
..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus 119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~ 154 (183)
T 3deo_A 119 GYVRPEVVEALVELGADIEVEDERGLTALELAREIL 154 (183)
T ss_dssp HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH
T ss_pred hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc
Confidence 999999999999999999999999999999998743
No 101
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=3.8e-23 Score=192.12 Aligned_cols=159 Identities=16% Similarity=0.056 Sum_probs=129.1
Q ss_pred hcCCcchhhhhhhcCccccccchhhhhhhhhHhHHhccCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCc---
Q 006072 353 LQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDL----YQLEGLIRAGADPNRTDYDGRSPLHLAASRGY--- 425 (662)
Q Consensus 353 ~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--- 425 (662)
.+.++.......+..+.+ ...+..|.||||.|+..|+. +++++|++.|+++|.+|..|+||||+|+..|+
T Consensus 14 a~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~ 90 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDI 90 (186)
T ss_dssp HHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCH
T ss_pred HHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcch
Confidence 334444444444444322 12236799999999999985 58999999999999999999999999999987
Q ss_pred ---HHHHHHHHhcCCCCcccCCCCC-cHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHH-cC
Q 006072 426 ---EEIMTFLIQKGVDINLKDNFGN-TPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS-NG 500 (662)
Q Consensus 426 ---~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~-~g 500 (662)
.+++++|+++|+++|.+|..|. ||||+|+..+..+ .++.+++++|++ +|
T Consensus 91 ~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~--------------------------~~~~~iv~~Ll~~~g 144 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE--------------------------NEMIPLYKLIFSQSG 144 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCH--------------------------HHHHHHHHHHHTSTT
T ss_pred hhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCCh--------------------------hhHHHHHHHHHHhcC
Confidence 6889999999999999999999 9999998754321 123467788888 88
Q ss_pred CCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCC
Q 006072 501 IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD 540 (662)
Q Consensus 501 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d 540 (662)
++++.+|..|.||||+|+..|+.++|++|+++..+.+.++
T Consensus 145 ad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 145 LQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp CCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999998876666554
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=8.9e-23 Score=196.41 Aligned_cols=138 Identities=19% Similarity=0.252 Sum_probs=110.6
Q ss_pred hhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhc-CCCCcccCCCCCcHHHHHH
Q 006072 376 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEAI 454 (662)
Q Consensus 376 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~ 454 (662)
.+..+.||||.||..|+.++++.|++.|++++.+|..|.||||+||..|+.+++++|+++ |++++.+|..|.||||+|+
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 356678999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred HhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCC
Q 006072 455 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 534 (662)
Q Consensus 455 ~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 534 (662)
..|+.+++++|+++| ++++.+|..|.||||+|+..|+.++++.|++.|+
T Consensus 149 ~~~~~~~v~~Ll~~g-------------------------------a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 149 WKGYADIVQLLLAKG-------------------------------ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HHTCHHHHHHHHHHT-------------------------------CCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHcC-------------------------------CCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 888777777666655 4667888899999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 006072 535 SVFPKDRWGN 544 (662)
Q Consensus 535 ~~~~~d~~g~ 544 (662)
+.+..|..|+
T Consensus 198 ~~~~~~~~~~ 207 (222)
T 3ehr_A 198 VRTLSNAEDY 207 (222)
T ss_dssp ----------
T ss_pred hhhccchhhh
Confidence 9887776543
No 103
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=9.3e-23 Score=180.06 Aligned_cols=130 Identities=25% Similarity=0.321 Sum_probs=111.8
Q ss_pred hhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHH
Q 006072 375 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 454 (662)
Q Consensus 375 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 454 (662)
..+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCC
Q 006072 455 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 534 (662)
Q Consensus 455 ~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 534 (662)
..|+.+++++|+++| ++++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus 85 ~~~~~~~v~~Ll~~g-------------------------------a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 85 KNGHVDIVKLLLSYG-------------------------------ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HTTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HcCCHHHHHHHHHcC-------------------------------CCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 887777776666654 4667888889999999999888898888877654
Q ss_pred C
Q 006072 535 S 535 (662)
Q Consensus 535 ~ 535 (662)
.
T Consensus 134 s 134 (137)
T 3c5r_A 134 S 134 (137)
T ss_dssp -
T ss_pred C
Confidence 3
No 104
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=4.6e-22 Score=171.97 Aligned_cols=118 Identities=34% Similarity=0.455 Sum_probs=101.5
Q ss_pred hhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHh
Q 006072 377 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKY 456 (662)
Q Consensus 377 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 456 (662)
+..+.+|||.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHH
Q 006072 457 GNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLM 525 (662)
Q Consensus 457 ~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 525 (662)
|+.+++++|+++|+ +++.+|..|.||||+|+..+..++
T Consensus 84 ~~~~~v~~Ll~~ga-------------------------------~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 84 GHVSCVKLLLSKGA-------------------------------DKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp TCHHHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred CCHHHHHHHHHcCC-------------------------------CCCCcCCCCCCHHHHhCCHHHHHH
Confidence 87777777666554 666778888888888854444443
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.87 E-value=1.2e-21 Score=194.75 Aligned_cols=192 Identities=17% Similarity=0.077 Sum_probs=144.0
Q ss_pred hhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCcHHHHHHHHhcCC-CCcccCCCCCcHHHHH
Q 006072 376 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNR-TDYDGRSPLHLAASRGYEEIMTFLIQKGV-DINLKDNFGNTPLLEA 453 (662)
Q Consensus 376 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A 453 (662)
-|..+.++++.+...|+....+.+...-..... +...+.... .....-..+++...-. ..+.......++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 344566788888888887776665433221111 101111111 1111112223332211 1122222345789999
Q ss_pred HHhCCHHHHHHHHHcCCCCcc--------cccchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCc
Q 006072 454 IKYGNDGAASLLVKEGASLNV--------EEAGSFLCTAVAR---GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGL 522 (662)
Q Consensus 454 ~~~~~~~~v~~Ll~~g~~~~~--------~~~~~~l~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 522 (662)
+..|+.+.++.+++.|++++. ..|.||||+|+.. |+.+++++|+++|+++|.+|..|+||||+|+..|+
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~ 217 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence 999999999999999998652 3588999999999 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccc
Q 006072 523 YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL 571 (662)
Q Consensus 523 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~ 571 (662)
.+++++|+++|||++.+|..|.||||+|+..|+.+++++|+++|++...
T Consensus 218 ~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 266 (278)
T 1dcq_A 218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN 266 (278)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999999999999999999997543
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=4.3e-21 Score=156.75 Aligned_cols=93 Identities=39% Similarity=0.523 Sum_probs=85.8
Q ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCC
Q 006072 476 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 555 (662)
Q Consensus 476 ~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~ 555 (662)
+|.||||.|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 36788888888888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccc
Q 006072 556 KNLIKLLEDAKST 568 (662)
Q Consensus 556 ~~iv~~Ll~~ga~ 568 (662)
.+++++|+++||+
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999985
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=6.6e-21 Score=195.78 Aligned_cols=145 Identities=29% Similarity=0.311 Sum_probs=106.6
Q ss_pred hhhhhHhHHhcc-CCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHH
Q 006072 379 ELALKVNSAAYH-GDLYQLEGLIRAGADPNRTD--YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 455 (662)
Q Consensus 379 ~~~~~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 455 (662)
.+.++||.|+.. |++++++.|++.|+++|..+ ..|.||||+|+..|+.+++++|+++|+++|..|..|.||||+|+.
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~ 277 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 456899999999 99999999999999999887 789999999999999999999999999999999999999998888
Q ss_pred hCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCC--
Q 006072 456 YGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG-- 533 (662)
Q Consensus 456 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-- 533 (662)
.|+.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+.++
T Consensus 278 ~g~~~~v~~LL~~G-------------------------------ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 278 LGHTGLACLFLKRG-------------------------------ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred cCcHHHHHHHHHCc-------------------------------CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 87777766666655 466777888888888888888888888888765
Q ss_pred -CCCCCCCCCCCChHHHHHHcC
Q 006072 534 -ASVFPKDRWGNTPLDEGRMCG 554 (662)
Q Consensus 534 -a~~~~~d~~g~tpl~~A~~~~ 554 (662)
++....+..+.|+++++....
T Consensus 327 ~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 327 EAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp ----------------------
T ss_pred cccccccCCCCCCHHHHHHHHH
Confidence 334455667778887776544
No 108
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=7.6e-21 Score=191.07 Aligned_cols=125 Identities=25% Similarity=0.156 Sum_probs=118.3
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcc--------cccchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCc
Q 006072 444 NFGNTPLLEAIKYGNDGAASLLVKEGASLNV--------EEAGSFLCTAVAR---GDSDLLKRVLSNGIDPNTRDYDLRT 512 (662)
Q Consensus 444 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--------~~~~~~l~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t 512 (662)
..+.++|+.|+..|+.+.++.|++.|++++. ..|.||||+|+.. ++.+++++|+++|+++|.+|..|+|
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~T 228 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 228 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCC
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCC
Confidence 3456889999999999999999999999875 3588999999997 8999999999999999999999999
Q ss_pred HHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhcccc
Q 006072 513 PLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 568 (662)
Q Consensus 513 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~ 568 (662)
|||+|+..|+.+++++|+++|||++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=4.5e-21 Score=207.28 Aligned_cols=126 Identities=25% Similarity=0.259 Sum_probs=79.4
Q ss_pred hhHhHHhccCCHHHHHHHHHcCCCCCCC------CCCCCcHHHHHHH---cCcHHHHHHHHhcCCCCcccCCCCCcHHHH
Q 006072 382 LKVNSAAYHGDLYQLEGLIRAGADPNRT------DYDGRSPLHLAAS---RGYEEIMTFLIQKGVDINLKDNFGNTPLLE 452 (662)
Q Consensus 382 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~~g~t~L~~A~~---~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 452 (662)
..||.|+..|+.+.++.|++.|+++|.. +..|.||||+||. .|+.+++++|+++|+++|.+|..|.||||+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 4566666666666666666666666655 5566666666644 566666666666666666666666666666
Q ss_pred HHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHC
Q 006072 453 AIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA 532 (662)
Q Consensus 453 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 532 (662)
|+..|+.+++++|+++ |+++|.+|..|.||||+|+..|+.+++++|+++
T Consensus 214 A~~~g~~~~v~~Ll~~-------------------------------ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 262 (497)
T 3lvq_E 214 AALYNQPDCLKLLLKG-------------------------------RALVGTVNEAGETALDIARKKHHKECEELLEQA 262 (497)
T ss_dssp HTTTTCHHHHHHHHHT-------------------------------CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc-------------------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 6665555555555554 556666667777777777777777777777777
Q ss_pred CCCCCC
Q 006072 533 GASVFP 538 (662)
Q Consensus 533 ga~~~~ 538 (662)
||+++.
T Consensus 263 ga~~~~ 268 (497)
T 3lvq_E 263 QAGTFA 268 (497)
T ss_dssp CC----
T ss_pred CCCCCC
Confidence 777655
No 110
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=2.4e-20 Score=185.22 Aligned_cols=130 Identities=21% Similarity=0.200 Sum_probs=99.7
Q ss_pred hhhhhhhhHhHHhccCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHHc---CcHHHHHHHHhcCCCCcccCCCC
Q 006072 376 HEAELALKVNSAAYHGDLYQLEGLIRAGADPN------RTDYDGRSPLHLAASR---GYEEIMTFLIQKGVDINLKDNFG 446 (662)
Q Consensus 376 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g 446 (662)
......++|+.|+..|+.+.++.+++.|++++ ..+..|.||||+|+.. |+.+++++|+++|+++|.+|..|
T Consensus 126 ~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g 205 (278)
T 1dcq_A 126 DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG 205 (278)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTC
T ss_pred ccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCC
Confidence 34455677888888888888888888777743 3467777888888877 77778888888888877777777
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHH
Q 006072 447 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMA 526 (662)
Q Consensus 447 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 526 (662)
.||||+|+..|+.+++++|++ +|++++.+|..|.||||+|+..|+.+++
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~-------------------------------~gad~~~~d~~g~tpL~~A~~~~~~~~v 254 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLR-------------------------------GKASIEIANESGETPLDIAKRLKHEHCE 254 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHH-------------------------------cCCCCCCccCCCCCHHHHHHHcCCHHHH
Confidence 777777777666666555555 4557778888999999999999999999
Q ss_pred HHHHHCCCCC
Q 006072 527 KLLVEAGASV 536 (662)
Q Consensus 527 ~~Ll~~ga~~ 536 (662)
++|+++|++.
T Consensus 255 ~~Ll~~ga~~ 264 (278)
T 1dcq_A 255 ELLTQALSGR 264 (278)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHcCCCC
Confidence 9999998863
No 111
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.84 E-value=3.2e-22 Score=195.28 Aligned_cols=143 Identities=28% Similarity=0.246 Sum_probs=118.1
Q ss_pred hhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhC
Q 006072 378 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 457 (662)
Q Consensus 378 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 457 (662)
..+.+++..++..|+.+.+..+...+.++ +..|.||||+|+..|+.++++.|++ |+++|.+|..|.||||+|+..|
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g 88 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLG 88 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGSCHHH---HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHT
T ss_pred CCCccHHHHHHHcCCCccccccccccccc---ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCC
Confidence 34556777777777776665554444333 2568899999999999999999999 9999999999999999998888
Q ss_pred CHHHHHHHHHcCCCCcccccchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHhCcHHHHHHHHHCCCCC
Q 006072 458 NDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYLMAKLLVEAGASV 536 (662)
Q Consensus 458 ~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 536 (662)
+.+++++|+++|+ ++|.++ ..|.||||+|+..|+.+++++|+++|+++
T Consensus 89 ~~~~v~~Ll~~ga-------------------------------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 137 (244)
T 3ui2_A 89 SDKCVRLLAEAGA-------------------------------DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 137 (244)
T ss_dssp CHHHHHHHHHTTC-------------------------------CTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CHHHHHHHHHcCC-------------------------------CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 7777776666555 666666 77999999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHcCC
Q 006072 537 FPKDRWGNTPLDEGRMCGN 555 (662)
Q Consensus 537 ~~~d~~g~tpl~~A~~~~~ 555 (662)
+.+|..|.||||+|+..++
T Consensus 138 ~~~d~~g~t~l~~A~~~~~ 156 (244)
T 3ui2_A 138 EVEDERGLTALELAREILK 156 (244)
T ss_dssp TCCCTTCCCHHHHHHHHHT
T ss_pred CCCCCCCCcHHHHHHHHHh
Confidence 9999999999999997544
No 112
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=1.9e-20 Score=192.40 Aligned_cols=123 Identities=26% Similarity=0.240 Sum_probs=91.6
Q ss_pred CcHHHHHHHh-CCHHHHHHHHHcCCCCcccc----cchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhC
Q 006072 447 NTPLLEAIKY-GNDGAASLLVKEGASLNVEE----AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEG 521 (662)
Q Consensus 447 ~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~----~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 521 (662)
.||||.|+.. ++.++++.|++.|++++..+ |.||||+|+..|+.+++++|+++|+++|..|..|.||||+|+..|
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g 279 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 3444444444 44444444444444444322 344555555555556666666667788899999999999999999
Q ss_pred cHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccc
Q 006072 522 LYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 569 (662)
Q Consensus 522 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~ 569 (662)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++...
T Consensus 280 ~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~ 327 (368)
T 3jue_A 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327 (368)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence 999999999999999999999999999999999999999999988543
No 113
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=1.9e-20 Score=202.36 Aligned_cols=128 Identities=25% Similarity=0.156 Sum_probs=95.1
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCccc--------ccchHHHHHHH---cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 006072 449 PLLEAIKYGNDGAASLLVKEGASLNVE--------EAGSFLCTAVA---RGDSDLLKRVLSNGIDPNTRDYDLRTPLHVA 517 (662)
Q Consensus 449 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~--------~~~~~l~~A~~---~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 517 (662)
.||.|+..|+.+.++.|++.|++++.. .|.||||+|+. .|+.+++++|+++|+++|.+|..|+||||+|
T Consensus 135 ~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A 214 (497)
T 3lvq_E 135 RLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYA 214 (497)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHH
T ss_pred HHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence 344444444444444444444444322 34555555543 6777778888888889999999999999999
Q ss_pred HHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccccCCCC
Q 006072 518 ASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHG 576 (662)
Q Consensus 518 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~ 576 (662)
+..|+.+++++|+++|||++.+|..|+||||+|+..|+.+++++|+++|+++.....+.
T Consensus 215 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h~ 273 (497)
T 3lvq_E 215 ALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHV 273 (497)
T ss_dssp TTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---------
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCccee
Confidence 99999999999999999999999999999999999999999999999999988765443
No 114
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=4e-20 Score=150.93 Aligned_cols=93 Identities=40% Similarity=0.563 Sum_probs=84.8
Q ss_pred hhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCC
Q 006072 379 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 458 (662)
Q Consensus 379 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 458 (662)
+|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 006072 459 DGAASLLVKEGAS 471 (662)
Q Consensus 459 ~~~v~~Ll~~g~~ 471 (662)
.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999998874
No 115
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.82 E-value=1.3e-19 Score=164.52 Aligned_cols=143 Identities=24% Similarity=0.397 Sum_probs=126.6
Q ss_pred HhHHHhhchHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEee
Q 006072 206 EASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGI 285 (662)
Q Consensus 206 ~~~~l~~Lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~ 285 (662)
.+++++.||+++|.++..+++.++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++++|||.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ecCCcccEEEEeCCCccccchhhhcc--CCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHh
Q 006072 286 EENGTEDYVSYLHPNSSFGEVSILCN--IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL 353 (662)
Q Consensus 286 ~~~~~~~~~~~l~~G~~fGe~~~l~~--~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~ 353 (662)
.+..+..+++|++||+.+++.+ .+++++++|.++|+++.+++++|.++++.+|.....++..+.
T Consensus 84 ----~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~ 149 (160)
T 4f8a_A 84 ----DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLI 149 (160)
T ss_dssp ----TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHCC
T ss_pred ----CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999988 799999999999999999999999999999999999888773
No 116
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=2.9e-20 Score=158.45 Aligned_cols=107 Identities=37% Similarity=0.479 Sum_probs=69.1
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccccchHHHHHHHcC
Q 006072 409 TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARG 488 (662)
Q Consensus 409 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~ 488 (662)
+|.+|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-------------------- 64 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-------------------- 64 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT--------------------
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc--------------------
Confidence 455666666666666666666666666666666666666666666655555555544444
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCCh
Q 006072 489 DSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTP 546 (662)
Q Consensus 489 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 546 (662)
|++++.+|..|.||||+|+..|+.+++++|+++|+++|.++..|.||
T Consensus 65 -----------g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 65 -----------GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp -----------TCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred -----------CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 34555666677777777777777777777777777777777777766
No 117
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=1.4e-19 Score=154.20 Aligned_cols=106 Identities=30% Similarity=0.413 Sum_probs=92.0
Q ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcC
Q 006072 475 EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG 554 (662)
Q Consensus 475 ~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~ 554 (662)
.+|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~ 86 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG 86 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCC
Confidence 34566666666666777777777777888899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhccccccccCCCCCccc
Q 006072 555 NKNLIKLLEDAKSTQLLEFPHGFQDT 580 (662)
Q Consensus 555 ~~~iv~~Ll~~ga~~~~~~~~~~~~~ 580 (662)
+.+++++|+++|++++.....+.++.
T Consensus 87 ~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 87 HHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp CHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred CHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999888876654
No 118
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.77 E-value=1.2e-18 Score=166.76 Aligned_cols=137 Identities=22% Similarity=0.201 Sum_probs=95.9
Q ss_pred CchhHHHHh-hCc--chhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 006072 1 MPWDLIYKA-SGR--KEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPP 77 (662)
Q Consensus 1 ~P~~~i~~~-~~~--~~~~~~lrl~rllRl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~H~~aC~~~~i~~~~~~ 77 (662)
+|++++... .+. .+.+|++|++|++|+.|+.+...+....+.......++..+++.++++.|+.||+++++....+
T Consensus 81 lP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~- 159 (223)
T 1orq_C 81 VPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDP- 159 (223)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSST-
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-
Confidence 377666431 111 2345666666666666655422222222221112235677788888889999999988743211
Q ss_pred CCCCceEEeeccCCCCCcchhhccchHHHHHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006072 78 EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA 157 (662)
Q Consensus 78 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~ 157 (662)
++| +.+|..|+||+++|||||||||+.|.|+.|+++++++|++|+.++++++|.+++
T Consensus 160 ----~~~-------------------~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~ 216 (223)
T 1orq_C 160 ----NSS-------------------IKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSN 216 (223)
T ss_dssp ----TCS-------------------CCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCC-------------------cCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 125999999999999999999999999999999999999999999999999999
Q ss_pred HHHc
Q 006072 158 LIVK 161 (662)
Q Consensus 158 ~~~~ 161 (662)
.+++
T Consensus 217 ~~~~ 220 (223)
T 1orq_C 217 MFQK 220 (223)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 119
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.76 E-value=3.7e-18 Score=158.94 Aligned_cols=150 Identities=16% Similarity=0.170 Sum_probs=135.6
Q ss_pred ccHhHHHhhchHHH----HHHHHHHHHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCE
Q 006072 204 YTEASVLQDIPISI----RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGK 279 (662)
Q Consensus 204 ~~~~~~l~~Lp~~L----~~~i~~~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~ 279 (662)
.-++.+.+.++|++ +.+........+++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.
T Consensus 11 ~~~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~ 90 (187)
T 3gyd_A 11 HHENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGE 90 (187)
T ss_dssp CCHHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEE
T ss_pred cccceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCE
Confidence 34566677777765 34455566778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHh
Q 006072 280 LEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL 353 (662)
Q Consensus 280 v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~ 353 (662)
|+++....+|++..+..+++|++||+.+++.+.+++++++|.++|+++.+++++|.+++..+|.....++..+.
T Consensus 91 v~v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~ 164 (187)
T 3gyd_A 91 VNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLL 164 (187)
T ss_dssp EEEEEEETTTEEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHH
Confidence 99999888999999999999999999999999999999999999999999999999999999999988885544
No 120
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.76 E-value=4.8e-18 Score=150.63 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=114.5
Q ss_pred HHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccE---EEEeCCCccc
Q 006072 227 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY---VSYLHPNSSF 303 (662)
Q Consensus 227 ~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~---~~~l~~G~~f 303 (662)
.+.++++|+|.+++++.+..++..++.+.|++|++|+++|+..+.+|||.+|.|+++....+|++.. +..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 3578899999999999999999999999999999999999999999999999999998888888888 9999999999
Q ss_pred cchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhc
Q 006072 304 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 354 (662)
Q Consensus 304 Ge~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~ 354 (662)
|+.+++.+.+++++++|.++|+++.+++++|.+++..+|.....++..+.+
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 135 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAA 135 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988887765
No 121
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.74 E-value=6.5e-18 Score=153.32 Aligned_cols=127 Identities=22% Similarity=0.361 Sum_probs=118.1
Q ss_pred HHHHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcc
Q 006072 223 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 302 (662)
Q Consensus 223 ~~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~ 302 (662)
...+..+++++|+|.+++++.+..++..++.+.|++|++|+++|+.++++|||.+|.|+++. ..+|++..+..+.+|++
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~~ 111 (161)
T 3idb_B 33 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGS 111 (161)
T ss_dssp HHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESCCE
T ss_pred HHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCCCE
Confidence 45567889999999999999999999999999999999999999999999999999999998 77888999999999999
Q ss_pred ccchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHH
Q 006072 303 FGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT 350 (662)
Q Consensus 303 fGe~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~ 350 (662)
||+.+++.+.++.++++|.++|.++.+++++|.+++..+|.....++.
T Consensus 112 fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 159 (161)
T 3idb_B 112 FGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 159 (161)
T ss_dssp ECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred echHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence 999999999999999999999999999999999999999987665443
No 122
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.74 E-value=7.5e-18 Score=148.76 Aligned_cols=131 Identities=24% Similarity=0.265 Sum_probs=116.2
Q ss_pred hchHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcc
Q 006072 212 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTE 291 (662)
Q Consensus 212 ~Lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~ 291 (662)
++|+.+|.+........+++++|+|.+++++.+..++..++.+.|++|++|+++|+..+.+|||.+|.|++.. +|
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g-- 81 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EG-- 81 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TT--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CC--
Confidence 5777778888888889999999999999999999999999999999999999999999999999999999864 33
Q ss_pred cEEEEeCCCccccchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHH
Q 006072 292 DYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 347 (662)
Q Consensus 292 ~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~ 347 (662)
..+..+.+|++||+.+++.+.++.++++|.++|+++.+++++|.+++..+|...++
T Consensus 82 ~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 82 VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp EEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred EEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 47888999999999999999999999999999999999999999999999987655
No 123
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.74 E-value=2.3e-17 Score=147.52 Aligned_cols=128 Identities=19% Similarity=0.299 Sum_probs=121.5
Q ss_pred HHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccch
Q 006072 227 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 306 (662)
Q Consensus 227 ~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 306 (662)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++....+|++..+..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 45788999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred hhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhc
Q 006072 307 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 354 (662)
Q Consensus 307 ~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~ 354 (662)
+++.+.|+.++++|.++|+++.+++++|.+++..+|.....++..+.+
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 131 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVAR 131 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888877655
No 124
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.73 E-value=1.4e-17 Score=146.66 Aligned_cols=57 Identities=26% Similarity=0.353 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 006072 106 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 162 (662)
Q Consensus 106 ~Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~~ 162 (662)
.|.+|+||+++|||||||||+.|.|..+++++++++++|+.+++++++.+++.+.+.
T Consensus 84 s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~ 140 (155)
T 2a9h_A 84 SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGR 140 (155)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999883
No 125
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.73 E-value=2.1e-17 Score=139.31 Aligned_cols=88 Identities=36% Similarity=0.571 Sum_probs=81.5
Q ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHHCCCCCCCCCCCCCChHHHHHHcC
Q 006072 475 EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG 554 (662)
Q Consensus 475 ~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~ 554 (662)
.++.|+||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~ 101 (110)
T 2zgd_A 22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101 (110)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcC
Confidence 35678888888888888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHH
Q 006072 555 NKNLIKLL 562 (662)
Q Consensus 555 ~~~iv~~L 562 (662)
+.+++++|
T Consensus 102 ~~~~~~~L 109 (110)
T 2zgd_A 102 NEDLAEIL 109 (110)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHh
Confidence 99999987
No 126
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.72 E-value=4.5e-17 Score=146.49 Aligned_cols=130 Identities=14% Similarity=0.217 Sum_probs=118.1
Q ss_pred HHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccc
Q 006072 226 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 305 (662)
Q Consensus 226 ~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe 305 (662)
..++++++++|..++++.+..++..++.+.|++|++|+++|+..+.+|||.+|.|+++....+|++..+..+++|++||+
T Consensus 10 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~ 89 (154)
T 2z69_A 10 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE 89 (154)
T ss_dssp HHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESG
T ss_pred HHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeecc
Confidence 34678999999999999999999999999999999999999999999999999999998777888889999999999999
Q ss_pred hhhhccCC-ccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 306 VSILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 306 ~~~l~~~~-~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
.+++.+.+ +.++++|.++|+++.+++++|.+++..+|.....++..+.++
T Consensus 90 ~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~r 140 (154)
T 2z69_A 90 AMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTR 140 (154)
T ss_dssp GGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 99999998 999999999999999999999999999999999998887653
No 127
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.72 E-value=2.3e-17 Score=139.85 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 106 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 106 ~Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
.|.+|+||+++|+|||||||+.|.|..+++++++++++|+.+++++++.+++.+.+
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999998866
No 128
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.70 E-value=5.1e-17 Score=136.90 Aligned_cols=96 Identities=33% Similarity=0.479 Sum_probs=85.3
Q ss_pred ccccchhhhhhhhhHhHHhccCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCcH
Q 006072 370 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTP 449 (662)
Q Consensus 370 ~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 449 (662)
.......+.++.|+||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 14 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93 (110)
T ss_dssp --------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence 33455667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHH
Q 006072 450 LLEAIKYGNDGAASLL 465 (662)
Q Consensus 450 L~~A~~~~~~~~v~~L 465 (662)
||+|+..|+.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 9999999999999886
No 129
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.69 E-value=6.3e-17 Score=140.04 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhcCC
Q 006072 106 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKY-INRNRL 184 (662)
Q Consensus 106 ~Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~-m~~~~l 184 (662)
.|.+|+||+++|||||||||++|.|..|+++++++|++|+++++++++.+++.+.+....++.+++.+...+. .+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3889999999999999999999999999999999999999999999999999887743333333333333333 344456
Q ss_pred CHHHHHHHHHHHH
Q 006072 185 GRDIRDQIIGHLR 197 (662)
Q Consensus 185 ~~~l~~~i~~~~~ 197 (662)
+++.+..++++++
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 6666666666654
No 130
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.69 E-value=1.8e-16 Score=148.64 Aligned_cols=128 Identities=19% Similarity=0.203 Sum_probs=119.8
Q ss_pred HHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccch
Q 006072 227 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 306 (662)
Q Consensus 227 ~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 306 (662)
..+++.+++|.+++++.+..+...++.+.|++|++|+++||.++++|||.+|.|+++..+.+|++..+..+.+|++|||.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 45677899999999999999999999999999999999999999999999999999988889999999999999999987
Q ss_pred -hhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhc
Q 006072 307 -SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 354 (662)
Q Consensus 307 -~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~ 354 (662)
+++.+.|++++++|.++|+++.+++++|.+++..+|.....++..+.+
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 134 (194)
T 3dn7_A 86 MAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQK 134 (194)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 688899999999999999999999999999999999998877766654
No 131
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.68 E-value=2.5e-16 Score=150.44 Aligned_cols=126 Identities=21% Similarity=0.344 Sum_probs=117.9
Q ss_pred hcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhh
Q 006072 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSIL 309 (662)
Q Consensus 230 l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l 309 (662)
++++|+|.+++++.+..++..++.+.|++|++|+++|+.++++|||.+|.|+++....+|++..+..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 46789999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred ccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 310 CNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 310 ~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
.+.|++++++|.++|+++.+++++|.+++..+|.....++..+...
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 126 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARR 126 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888777653
No 132
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.68 E-value=3.4e-16 Score=137.88 Aligned_cols=124 Identities=22% Similarity=0.314 Sum_probs=114.5
Q ss_pred HHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccc
Q 006072 226 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 305 (662)
Q Consensus 226 ~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe 305 (662)
..++++++|+|.+++++.+..++..++.+.|++|++|+++|+..+.+|||.+|.|+++... ...+++|++||+
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-------~~~~~~G~~~G~ 81 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGE 81 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS-------CEEECTTCEECH
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC-------cceECCCCEeee
Confidence 4567899999999999999999999999999999999999999999999999999987532 246899999999
Q ss_pred hhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcCC
Q 006072 306 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGK 356 (662)
Q Consensus 306 ~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~~ 356 (662)
.+++.+.++.++++|.++|+++.+++++|.+++..+|.....++..+.++.
T Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~ 132 (138)
T 1vp6_A 82 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 132 (138)
T ss_dssp HHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred hHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999988876653
No 133
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.67 E-value=3.5e-16 Score=151.74 Aligned_cols=131 Identities=16% Similarity=0.224 Sum_probs=123.9
Q ss_pred HHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcccc
Q 006072 225 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 304 (662)
Q Consensus 225 ~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fG 304 (662)
.....++++|+|.+++++.+..++..++.+.|++|++|+++|+.++++|||.+|.|+++....+|++..+..+++|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence 34568899999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred chhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 305 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 305 e~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
+.+++.+.|++++++|.++|+++.+++++|.+++..+|.....++..+...
T Consensus 88 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 138 (237)
T 3fx3_A 88 EAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGH 138 (237)
T ss_dssp HHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888777653
No 134
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.67 E-value=3.3e-16 Score=151.30 Aligned_cols=129 Identities=18% Similarity=0.261 Sum_probs=120.8
Q ss_pred HHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccch
Q 006072 227 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 306 (662)
Q Consensus 227 ~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 306 (662)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|+..+.+|||.+|.|+++....+|++..+..+++|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 35788999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 307 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 307 ~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
+++.+.|++++++|.++|+++.+++++|.+++..+|.....++..+.+.
T Consensus 85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 133 (231)
T 3e97_A 85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARR 133 (231)
T ss_dssp TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888877654
No 135
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.66 E-value=2e-16 Score=152.44 Aligned_cols=129 Identities=20% Similarity=0.322 Sum_probs=122.0
Q ss_pred HHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccch
Q 006072 227 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 306 (662)
Q Consensus 227 ~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 306 (662)
.+.++++|+|.+++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++....+|++..+..+.+|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 45788999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred hhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 307 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 307 ~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
+++.+.|++++++|.++|+++.+++++|.+++..+|.....++..+.+.
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 133 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARR 133 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888776553
No 136
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.66 E-value=1.4e-15 Score=134.17 Aligned_cols=112 Identities=19% Similarity=0.272 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEeeccCCCCCcchhhccchHHHHHHHHHHHHHHhhcccCCCcccC
Q 006072 50 IVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAV 129 (662)
Q Consensus 50 ~~~l~~~~~~~~H~~aC~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~ttvGygdi~p~ 129 (662)
.+.+++.++++.+++++++|.... .| .|.+|+||+++|+|||||||++|.
T Consensus 26 ~~~~~~~~~~~~~~~g~~~~~~~e---------~~---------------------~~~~a~y~~~~t~tTvGyGd~~p~ 75 (148)
T 3vou_A 26 EFQVLFVLTFLTLTSGTIFYSTVE---------GL---------------------RPLDALYFSVVTLTTVGDGNFSPQ 75 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS---------CC---------------------CHHHHHHHHHHHHTTCCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---------CC---------------------CHHHHHHHHHHHHHccCCCCCCCC
Confidence 445566666667777887776431 12 388899999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHc-----CcccHHHHHHHHHHHHHHhhcCCCHHHHHH
Q 006072 130 NLREMVFIMIYVSFDMILGAYLIGNMTA------LIVK-----GSKTEKFRDKMTDLMKYINRNRLGRDIRDQ 191 (662)
Q Consensus 130 ~~~e~~~~i~~~~~g~~~~~~~i~~i~~------~~~~-----~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~ 191 (662)
|..+++++++++++|+.+++++++.++. +... +....+..++++++++++++++.|+.|+.|
T Consensus 76 t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 76 TDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 9999999999999999999999999886 2222 223345667888999999999999998765
No 137
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.66 E-value=7.3e-16 Score=138.50 Aligned_cols=119 Identities=24% Similarity=0.367 Sum_probs=108.4
Q ss_pred HHHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 224 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 224 ~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
.....+++++|+|.+++++.+..++..++.+.|.+|++|+++|+.++++|||.+|.|+++. +| ..+..+.+|++|
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~--~~~~~~~~G~~f 108 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGSF 108 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TT--EEEEEECTTCEE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CC--EEEEEecCCCEe
Confidence 3456788899999999999999999999999999999999999999999999999999986 33 367889999999
Q ss_pred cchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHH
Q 006072 304 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 347 (662)
Q Consensus 304 Ge~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~ 347 (662)
|+.+++.+.++.++++|.++|.++.|++++|.+++..++.....
T Consensus 109 Ge~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~ 152 (154)
T 3pna_A 109 GELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK 152 (154)
T ss_dssp CCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred eehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence 99999999999999999999999999999999999998876554
No 138
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.66 E-value=2e-16 Score=139.09 Aligned_cols=118 Identities=19% Similarity=0.355 Sum_probs=106.9
Q ss_pred HHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEE--EeCCCccccc
Q 006072 228 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVS--YLHPNSSFGE 305 (662)
Q Consensus 228 ~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~--~l~~G~~fGe 305 (662)
++++++|+|..++++.+..++..++.+.|++|++|+++||..+.+|||.+|.|++. ...+|++..+. .+.+|++||+
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fGe 84 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCGD 84 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSST
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEecH
Confidence 46789999999999999999999999999999999999999999999999999955 56677777666 9999999999
Q ss_pred hhh---hccCC------ccceEEEccceeEEEecHHHHHHHHHHhhhcHH
Q 006072 306 VSI---LCNIP------QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR 346 (662)
Q Consensus 306 ~~~---l~~~~------~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~ 346 (662)
.++ +.+.+ ++++++|.++|+++.|++++|.+++..+|....
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 85 ELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 985 77774 579999999999999999999999999997654
No 139
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.66 E-value=9.4e-16 Score=146.85 Aligned_cols=127 Identities=15% Similarity=0.118 Sum_probs=119.7
Q ss_pred HHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcc--ccc
Q 006072 228 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS--FGE 305 (662)
Q Consensus 228 ~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~--fGe 305 (662)
++++++|+|.+++++.+..+...++.+.|++|++|+++|+.++++|||.+|.|+++....+|++..+..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 568899999999999999999999999999999999999999999999999999998888999999999999999 899
Q ss_pred hhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhc
Q 006072 306 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 354 (662)
Q Consensus 306 ~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~ 354 (662)
.+++.+.|++++++|.++|+++.+++++|.+++..+|.....++..+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 131 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT 131 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888776655
No 140
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.65 E-value=9.4e-16 Score=148.10 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=122.8
Q ss_pred HHHHHhcccccccCCCHHHHHHHHHh--ccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcc
Q 006072 225 LYLPYIEKVPLFKGCSSEFINQIVIR--LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 302 (662)
Q Consensus 225 ~~~~~l~~~~~f~~~~~~~~~~l~~~--~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~ 302 (662)
.....+.++|+|..++++.+..++.. ++.+.|++|++|+++||.++.+|||.+|.|+++....+|++..+..+++|++
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~ 94 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYL 94 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEE
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCe
Confidence 34567889999999999999999998 9999999999999999999999999999999998888999999999999999
Q ss_pred ccchhhhccCC-ccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 303 FGEVSILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 303 fGe~~~l~~~~-~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
||+.+++.+.+ +.++++|.++|+++.+++++|.+++..+|.....++..+...
T Consensus 95 fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 148 (232)
T 1zyb_A 95 IEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNR 148 (232)
T ss_dssp ECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHH
T ss_pred eeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999988 999999999999999999999999999999998888777553
No 141
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.64 E-value=4.5e-16 Score=149.87 Aligned_cols=129 Identities=14% Similarity=0.224 Sum_probs=122.0
Q ss_pred HHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccch
Q 006072 227 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 306 (662)
Q Consensus 227 ~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 306 (662)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++++|||.+|.|+++....+|++..+..+++|++||+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 46788999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred hhhccCC-ccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 307 SILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 307 ~~l~~~~-~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
+++.+.| ++++++|.++|+++.+++++|.+++..+|.....++..+...
T Consensus 88 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 137 (227)
T 3dkw_A 88 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTR 137 (227)
T ss_dssp TTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHH
T ss_pred HhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999999999998888777653
No 142
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.63 E-value=1.3e-15 Score=153.39 Aligned_cols=141 Identities=23% Similarity=0.244 Sum_probs=127.2
Q ss_pred HHhhchHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecC
Q 006072 209 VLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 288 (662)
Q Consensus 209 ~l~~Lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~ 288 (662)
...++|+..|.+.......+.++++++|.+++++.+..|+..++.+.|++|++|+++||.++.+|||.+|.|++.. +
T Consensus 20 ~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~ 96 (299)
T 3shr_A 20 SMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---E 96 (299)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---T
T ss_pred ccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---C
Confidence 4567888888888889999999999999999999999999999999999999999999999999999999999864 3
Q ss_pred CcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhc
Q 006072 289 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 354 (662)
Q Consensus 289 ~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~ 354 (662)
| ..+..+.+|++|||.+++.+.|+.++++|.++|.++.|++++|.+++..+|......+..+++
T Consensus 97 g--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~ 160 (299)
T 3shr_A 97 G--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLK 160 (299)
T ss_dssp T--EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C--EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHh
Confidence 3 568889999999999999999999999999999999999999999999998776655555544
No 143
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.63 E-value=2e-15 Score=154.37 Aligned_cols=127 Identities=17% Similarity=0.304 Sum_probs=119.8
Q ss_pred HHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccch
Q 006072 227 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 306 (662)
Q Consensus 227 ~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 306 (662)
.++++++|+|.+++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++....+|++ .+..+.+|++|||.
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~ 90 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEI 90 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHH
Confidence 46788999999999999999999999999999999999999999999999999999987877876 88999999999999
Q ss_pred hhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 307 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 307 ~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
+++.+.|++++++|.++|+++.|++++|.+++ .+|.....++..+.+.
T Consensus 91 ~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~ 138 (333)
T 4ava_A 91 ALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQR 138 (333)
T ss_dssp HHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHH
T ss_pred HhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 8999999988877664
No 144
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.63 E-value=1.5e-15 Score=146.79 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=114.3
Q ss_pred cccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhc
Q 006072 231 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC 310 (662)
Q Consensus 231 ~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~ 310 (662)
..+|+|..++++.+..++..++.+.|++|++|+++|+..+.+|||.+|.|+++....+|++..+..+++|++||+.+++.
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~ 92 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA 92 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence 36899999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred cCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 311 NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 311 ~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
+.|++++++|.++|+++.+++++|.+++..+|.....++..+.+.
T Consensus 93 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 137 (232)
T 2gau_A 93 EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKE 137 (232)
T ss_dssp TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888877653
No 145
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.62 E-value=3.4e-15 Score=144.06 Aligned_cols=128 Identities=13% Similarity=0.198 Sum_probs=109.9
Q ss_pred HHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccch
Q 006072 227 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 306 (662)
Q Consensus 227 ~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 306 (662)
...++..++|.+++++.+..+...++.+.|++|++|+++||.++++|||.+|.|+++....+|++..+..+++|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 45678899999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hhhccC-CccceEEEccceeEEEecHHHHHHHHHHh-----hhcHHHHHHHHhc
Q 006072 307 SILCNI-PQPYTVQVCELCRLLRIDKQSFTNIIDIY-----FCDGRKVLTNLLQ 354 (662)
Q Consensus 307 ~~l~~~-~~~~~~~a~~~~~l~~l~~~~~~~~l~~~-----~~~~~~il~~l~~ 354 (662)
+++.+. |++++++|.++|+++.+++++|.+++..+ |.....++..+.+
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~ 143 (230)
T 3iwz_A 90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK 143 (230)
T ss_dssp GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH
T ss_pred hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH
Confidence 999875 79999999999999999999999999999 8888887777655
No 146
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.61 E-value=2e-15 Score=131.80 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEeeccCCCCCcchhhccchHHHHHHHHHHHHHHhhcccCCCcc
Q 006072 48 SRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVH 127 (662)
Q Consensus 48 ~~~~~l~~~~~~~~H~~aC~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~ttvGygdi~ 127 (662)
..++..++.+++++++.+++++++....+ .+..| .|..|+||+++|+|||||||+.
T Consensus 6 r~~~~~~~~~~~~~~~~a~~~~~~e~~~~---~~~~~---------------------~~~~a~yf~~~T~tTvGyGd~~ 61 (139)
T 3eff_K 6 RAAGAATVLLVIVLLAGSYLAVLAERGAP---GAQLI---------------------TYPRALWWSVETATTVGYGDLY 61 (139)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTTSSCT---TCCCC---------------------CHHHHHHHHHHHHTTCCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CcccC---------------------CHHHHHHHHheeeecccCCCCc
Confidence 34555666666676777777776654221 11111 4889999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 128 AVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 128 p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
|.|..+++++++++++|+++++++++.++..+.+
T Consensus 62 P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 62 PVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988755
No 147
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.60 E-value=2.3e-15 Score=151.52 Aligned_cols=132 Identities=22% Similarity=0.328 Sum_probs=123.8
Q ss_pred HHHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeee-cCCcccEEEEeCCCcc
Q 006072 224 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIE-ENGTEDYVSYLHPNSS 302 (662)
Q Consensus 224 ~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~-~~~~~~~~~~l~~G~~ 302 (662)
..+..++.++|+|..++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++... .+|++..+..+++|++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~ 232 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence 445678889999999999999999999999999999999999999999999999999999866 5788889999999999
Q ss_pred ccchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 303 FGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 303 fGe~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
|||.+++.+.|+.++++|.++|+++.|++++|.+++..+|.....++..+.++
T Consensus 233 fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r 285 (299)
T 3shr_A 233 FGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAK 285 (299)
T ss_dssp ECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred eChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999888664
No 148
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.60 E-value=3e-16 Score=137.45 Aligned_cols=116 Identities=20% Similarity=0.293 Sum_probs=104.4
Q ss_pred HHHHHHHhcccccccCCCHHHHHHHHHhccceecc-CCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCc
Q 006072 223 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL-PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNS 301 (662)
Q Consensus 223 ~~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~-~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~ 301 (662)
......+++++++|..++++.+..++..++.+.|. +|++|+++|+..+.+|||.+|.|+++. .+|+. ..+.+|+
T Consensus 11 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~---~~l~~G~ 85 (134)
T 2d93_A 11 IEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV---ENLFMGN 85 (134)
T ss_dssp HHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE---EEECTTC
T ss_pred HHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE---EEecCCC
Confidence 34455678899999999999999999999999999 999999999999999999999999884 45544 5589999
Q ss_pred cccchhhhccCCccceE-EEccceeEEEecHHHHHHHHHHhhh
Q 006072 302 SFGEVSILCNIPQPYTV-QVCELCRLLRIDKQSFTNIIDIYFC 343 (662)
Q Consensus 302 ~fGe~~~l~~~~~~~~~-~a~~~~~l~~l~~~~~~~~l~~~~~ 343 (662)
+||+.+++.+.++.+++ +|.++|.++.|++++|.+++...+.
T Consensus 86 ~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 86 SFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp EESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred ccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 99999999999999999 9999999999999999999876654
No 149
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.60 E-value=1.3e-15 Score=162.56 Aligned_cols=124 Identities=17% Similarity=0.187 Sum_probs=88.3
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEeeccCCC
Q 006072 14 EAVRYLLWIRLYRVRKVSQFFHKMEKDIRI-NYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGD 92 (662)
Q Consensus 14 ~~~~~lrl~rllRl~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~H~~aC~~~~i~~~~~~~~~~~~w~~~~~~~~ 92 (662)
..+|++|++|++|++|+.+....++..... ......+..+++++++.++++||++|++... ....
T Consensus 306 ~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~-----~~~~--------- 371 (514)
T 2r9r_B 306 RVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAD-----ERDS--------- 371 (514)
T ss_dssp HHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CTTC---------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecc-----CCCc---------
Confidence 345666666666666666555544433221 1122334555566666778888887766321 0111
Q ss_pred CCcchhhccchHHHHHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 93 YSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 93 ~~~~~~~~~~~~~~Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
.+..|..|+||+++|||||||||+.|.+..++++++++|++|+++++++++.+.+.+..
T Consensus 372 ----------~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 372 ----------QFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp ----------SCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ----------cccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12358899999999999999999999999999999999999999999999999887765
No 150
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.58 E-value=1.3e-14 Score=137.65 Aligned_cols=122 Identities=16% Similarity=0.260 Sum_probs=111.2
Q ss_pred ccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccC-
Q 006072 234 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI- 312 (662)
Q Consensus 234 ~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~- 312 (662)
+++..++++.+..++..++.+.|++|++|+++|+.++++|||.+|.|+++....+|++..+..+++|++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 4566789999999999999999999999999999999999999999999988889999999999999999999999988
Q ss_pred CccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 313 PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 313 ~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
|+.++++|.++|+++.+++++|.+++..+|.....++..+...
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 124 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR 124 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998888777553
No 151
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.57 E-value=5.1e-15 Score=155.26 Aligned_cols=124 Identities=22% Similarity=0.358 Sum_probs=115.9
Q ss_pred HHHHHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCc
Q 006072 222 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNS 301 (662)
Q Consensus 222 ~~~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~ 301 (662)
........++++++|.+++++.+..|+..++.+.|++|++|+++||.++.+|||.+|.|+++. ..+|++..+..+.+|+
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~ 217 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRG 217 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCC
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCC
Confidence 345667889999999999999999999999999999999999999999999999999999987 6778888999999999
Q ss_pred cccchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHH
Q 006072 302 SFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR 346 (662)
Q Consensus 302 ~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~ 346 (662)
+|||.+++.+.|+.++++|.++|.++.|++++|..++..+|....
T Consensus 218 ~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 218 SFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp EECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred EEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 999999999999999999999999999999999999998886544
No 152
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.57 E-value=2.2e-14 Score=135.82 Aligned_cols=117 Identities=15% Similarity=0.259 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccC----Cc
Q 006072 239 CSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI----PQ 314 (662)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~----~~ 314 (662)
++++.+..++..++.+.|++|++|+++|+..+++|||.+|.|+++....+|++..+..+++|++||+.+++.+. |+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 57899999999999999999999999999999999999999999988888999999999999999999999988 89
Q ss_pred cceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 315 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 315 ~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
+++++|.++|+++.+++++|.+++..+|.....++..+.+.
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 121 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADR 121 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888776553
No 153
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.55 E-value=2.8e-14 Score=142.98 Aligned_cols=129 Identities=18% Similarity=0.255 Sum_probs=116.4
Q ss_pred HHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCC-cccEEEEeCCCccc
Q 006072 225 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG-TEDYVSYLHPNSSF 303 (662)
Q Consensus 225 ~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~-~~~~~~~l~~G~~f 303 (662)
+...++.++++|..++...+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++....+| +...+..+++|++|
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f 233 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYF 233 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEe
Confidence 34566788999999999999999999999999999999999999999999999999998765555 45788999999999
Q ss_pred cchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHh
Q 006072 304 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL 353 (662)
Q Consensus 304 Ge~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~ 353 (662)
||.+++.+.|++++++|.++|+++.|++++|.+++..+|.....++....
T Consensus 234 Ge~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~ 283 (291)
T 2qcs_B 234 GEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYN 283 (291)
T ss_dssp CSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHH
T ss_pred cHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987766665543
No 154
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.6e-14 Score=140.77 Aligned_cols=124 Identities=27% Similarity=0.343 Sum_probs=112.3
Q ss_pred HHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccc
Q 006072 226 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 305 (662)
Q Consensus 226 ~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe 305 (662)
..+.++++|+|.+++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++. ++. .+..+++|++|||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~--~~~~~~~g~~fGe 79 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDN--KVNSSGPGSSFGE 79 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTS--CCEEECTTCEECH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCE--EEEecCCCCeeeh
Confidence 45678899999999999999999999999999999999999999999999999999885 333 3688999999999
Q ss_pred hhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhc
Q 006072 306 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 354 (662)
Q Consensus 306 ~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~ 354 (662)
.+++.+.|++++++|.++|.++.+++++|.+++..+|.....++..+++
T Consensus 80 ~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (246)
T 3of1_A 80 LALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLK 128 (246)
T ss_dssp HHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHH
T ss_pred hHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999777666555544
No 155
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.55 E-value=4.9e-14 Score=141.15 Aligned_cols=127 Identities=23% Similarity=0.364 Sum_probs=117.1
Q ss_pred HHHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 224 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 224 ~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
....+.++++|+|.+++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +| ..+..+.+|++|
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g--~~~~~l~~G~~f 109 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGSF 109 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT--EEEEEECTTCEE
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC--eEEEEcCCCCcc
Confidence 4566789999999999999999999999999999999999999999999999999999886 34 468889999999
Q ss_pred cchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 304 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 304 Ge~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
||.+++.+.|+.++++|.++|.++.+++++|.+++..+|.....++..++..
T Consensus 110 Ge~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (291)
T 2qcs_B 110 GELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK 161 (291)
T ss_dssp CGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998888877766654
No 156
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.53 E-value=5e-14 Score=138.38 Aligned_cols=119 Identities=16% Similarity=0.274 Sum_probs=109.3
Q ss_pred cCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccC-Ccc
Q 006072 237 KGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-PQP 315 (662)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~-~~~ 315 (662)
..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++....+|++..+..+++|++||+.+++.+. |++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~ 134 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 134 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCC
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCc
Confidence 4589999999999999999999999999999999999999999999988889999999999999999999999988 899
Q ss_pred ceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 316 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 316 ~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
++++|.++|+++.+++++|.+++..+|.....++..+...
T Consensus 135 ~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~ 174 (260)
T 3kcc_A 135 AWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR 174 (260)
T ss_dssp SEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred eEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888776553
No 157
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.53 E-value=1.9e-14 Score=154.62 Aligned_cols=142 Identities=20% Similarity=0.224 Sum_probs=128.0
Q ss_pred chHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCc--
Q 006072 213 IPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT-- 290 (662)
Q Consensus 213 Lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~-- 290 (662)
.|+..|.+.........++++++|.+++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++....+|+
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 456666666677788899999999999999999999999999999999999999999999999999999998777775
Q ss_pred ccEEEEeCCCccccchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 291 EDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 291 ~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
+..+..+++|++||+.+ +.+.|+.++++|.++|.++.|++++|.+++..+|.....++..+...
T Consensus 107 ~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~~ 170 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGV 170 (469)
T ss_dssp CEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTSC
T ss_pred ceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 47899999999999999 99999999999999999999999999999999999877776555443
No 158
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.53 E-value=2.6e-14 Score=135.98 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=108.1
Q ss_pred cccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccC
Q 006072 233 VPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI 312 (662)
Q Consensus 233 ~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~ 312 (662)
-|.|+..++.....+...++.+.|++|++|+++|+..+.+|||.+|.|+++....+|++..+..+++|++||+.+++.+.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~ 83 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE 83 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC
Confidence 46788888889999999999999999999999999999999999999999988889999999999999999999998876
Q ss_pred -CccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 313 -PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 313 -~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
++.++++|.++|+++.+++++|.+++..+|.....++..+.+.
T Consensus 84 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 127 (213)
T 1o5l_A 84 PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEH 127 (213)
T ss_dssp CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998888877654
No 159
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.7e-14 Score=138.25 Aligned_cols=117 Identities=19% Similarity=0.382 Sum_probs=106.5
Q ss_pred HHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcccc
Q 006072 225 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 304 (662)
Q Consensus 225 ~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fG 304 (662)
++..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++....+ .+..+++|++||
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~----~~~~l~~g~~fG 197 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG----VINKLKDHDYFG 197 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE----EEEEEETTCEEC
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc----eEEEcCCCCccc
Confidence 3456678899999999999999999999999999999999999999999999999999863221 688899999999
Q ss_pred chhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcH
Q 006072 305 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDG 345 (662)
Q Consensus 305 e~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~ 345 (662)
|.+++.+.|+.++++|.++|+++.|++++|.+++..+|...
T Consensus 198 e~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~ 238 (246)
T 3of1_A 198 EVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVL 238 (246)
T ss_dssp HHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred HHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999998877654
No 160
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.52 E-value=4.5e-14 Score=146.53 Aligned_cols=127 Identities=25% Similarity=0.369 Sum_probs=116.5
Q ss_pred HHHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 224 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 224 ~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
......++++++|.+++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++. +| ..+..+++|++|
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~--~~v~~l~~G~~f 200 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NG--EWVTNISEGGSF 200 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TT--EEEEEEESSCCB
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CC--eEeeeCCCCCEE
Confidence 4456789999999999999999999999999999999999999999999999999999986 33 367889999999
Q ss_pred cchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 304 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 304 Ge~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
||.+++.+.|+.++++|.++|.++.|++++|.+++..+|.....++..++++
T Consensus 201 Ge~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~ 252 (381)
T 4din_B 201 GELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK 252 (381)
T ss_dssp CGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999998888777766653
No 161
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.52 E-value=2.1e-14 Score=137.39 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=112.4
Q ss_pred HHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchh
Q 006072 228 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVS 307 (662)
Q Consensus 228 ~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~ 307 (662)
.+++++|+|..++++.+..++..++.+.|++|++|+++||.++++|||.+|.|+++ ...+|++..+..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~-- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT-- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES--
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC--
Confidence 46788999999999999999999999999999999999999999999999999995 678899999999999999998
Q ss_pred hhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 308 ILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 308 ~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
|++++++|.++|+++.+++++|.+++..+|.....++..+...
T Consensus 81 -----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~ 123 (220)
T 2fmy_A 81 -----HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDL 123 (220)
T ss_dssp -----CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred -----ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998888777553
No 162
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.52 E-value=3.6e-14 Score=147.27 Aligned_cols=130 Identities=19% Similarity=0.274 Sum_probs=117.5
Q ss_pred HHHHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCc-ccEEEEeCCCc
Q 006072 223 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT-EDYVSYLHPNS 301 (662)
Q Consensus 223 ~~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~-~~~~~~l~~G~ 301 (662)
..++..++.++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++....+|. ...+..+++|+
T Consensus 243 ~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd 322 (381)
T 4din_B 243 RKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSD 322 (381)
T ss_dssp HHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTC
T ss_pred HHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCC
Confidence 34566788999999999999999999999999999999999999999999999999999997655554 56789999999
Q ss_pred cccchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHH
Q 006072 302 SFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNL 352 (662)
Q Consensus 302 ~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l 352 (662)
+|||.+++.+.|+.++++|.++|+++.|++++|.+++..+|....+.+...
T Consensus 323 ~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 323 YFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp EECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred EechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987766655443
No 163
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.50 E-value=4.1e-13 Score=111.91 Aligned_cols=55 Identities=27% Similarity=0.352 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 107 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 107 Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
|.+|+||+++|+|||||||+.|.|..+++++++++++|+.++++.++.+++.+..
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999998855
No 164
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.49 E-value=3.1e-14 Score=136.36 Aligned_cols=119 Identities=12% Similarity=0.092 Sum_probs=111.2
Q ss_pred HhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhh
Q 006072 229 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSI 308 (662)
Q Consensus 229 ~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~ 308 (662)
+++++|+|..++++.+..++..++.+.|++|++|+++|+..+++|||.+|.|+++ ...+|++..+..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG---- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC---- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec----
Confidence 3678999999999999999999999999999999999999999999999999997 67889999999999999999
Q ss_pred hccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 309 LCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 309 l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
.|++++++|.++|+++.+++++|.+++..+|.....++..+...
T Consensus 76 ---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 119 (222)
T 1ft9_A 76 ---MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRA 119 (222)
T ss_dssp ---SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ---CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999888877653
No 165
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.48 E-value=6.2e-14 Score=146.99 Aligned_cols=127 Identities=17% Similarity=0.317 Sum_probs=109.9
Q ss_pred HHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecC------CcccEEEEeCC
Q 006072 226 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN------GTEDYVSYLHP 299 (662)
Q Consensus 226 ~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~------~~~~~~~~l~~ 299 (662)
+..++.++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++....+ |++..+..+++
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~ 344 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFR 344 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECT
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCC
Confidence 445778899999999999999999999999999999999999999999999999999876655 77888999999
Q ss_pred CccccchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHH
Q 006072 300 NSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNL 352 (662)
Q Consensus 300 G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l 352 (662)
|++|||.+++.+.|+.++++|.++|.++.|++++|.+++..+|....+.+..+
T Consensus 345 G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~ 397 (416)
T 3tnp_B 345 GQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY 397 (416)
T ss_dssp TCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC----
T ss_pred CCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887665554443
No 166
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.47 E-value=1.2e-13 Score=134.88 Aligned_cols=124 Identities=16% Similarity=0.121 Sum_probs=113.7
Q ss_pred HhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhh
Q 006072 229 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSI 308 (662)
Q Consensus 229 ~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~ 308 (662)
++.++..|..++++.+..+...++.+.|++|++|+++|+.++.+|||.+|.|+++....+|++..+..+++|++||+ +
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~ 87 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--L 87 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--C
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--e
Confidence 34444445889999999999999999999999999999999999999999999999888999999999999999999 7
Q ss_pred hccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 309 LCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 309 l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
+.+. ++++++|.++|+++.++++.|.+++..+|.....++..+.+.
T Consensus 88 l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 133 (250)
T 3e6c_C 88 YPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTK 133 (250)
T ss_dssp SCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred cCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 7777 999999999999999999999999999999998888877653
No 167
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.47 E-value=1.1e-14 Score=119.54 Aligned_cols=89 Identities=20% Similarity=0.077 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEeeccCCCCCcchhhccchHHHHHHHHHHHHHHhhcccCCCccc
Q 006072 49 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA 128 (662)
Q Consensus 49 ~~~~l~~~~~~~~H~~aC~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~ttvGygdi~p 128 (662)
+++..++.+++++.+.+++++++....+.+ .+..|.+|+||+++|+|||||||+.|
T Consensus 7 ~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~------------------------~~~~~~~a~y~~~~T~tTvGyGDi~P 62 (103)
T 2k1e_A 7 EAQKAEEELQKVLEEASKKAVEAERGAPGA------------------------ALISYPDAIWWSVETATTVGYGDRYP 62 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTC------------------------CCCCGGGTTTTTTGGGGCCSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCc------------------------ccccHHHHHHHHHHHHhcccCCCCCC
Confidence 345555666666677888888876432110 01247789999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 129 VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 129 ~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
.|..+++++++++++|+.+++++++.++..+.+
T Consensus 63 ~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~ 95 (103)
T 2k1e_A 63 VTEEGRKVAEQVMKAGIEVFALVTAALATDFVR 95 (103)
T ss_dssp CSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGG
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988865
No 168
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.45 E-value=4.8e-13 Score=104.23 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006072 107 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI 159 (662)
Q Consensus 107 Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~ 159 (662)
|.+|+||+++|+|||||||+.|.|..+|+++++.+++|+.++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999998865
No 169
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.44 E-value=8.7e-13 Score=106.37 Aligned_cols=82 Identities=27% Similarity=0.354 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEeeccCCCCCcchhhccchHHHHHHHHHHHHHHhhcccCCCcccC
Q 006072 50 IVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAV 129 (662)
Q Consensus 50 ~~~l~~~~~~~~H~~aC~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~ttvGygdi~p~ 129 (662)
.+..++.++++..+.+++.|.... .| .|.+|+||+++|+|||||||+.|.
T Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~~e---------~~---------------------~~~~a~yf~~~T~tTvGyGdi~P~ 55 (97)
T 3ouf_A 6 EFQVLFVLTILTLISGTIFYSTVE---------GL---------------------RPIDALYFSVVTLTTVGYGDFSPQ 55 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS---------CC---------------------CHHHHHHHHHHHHTTCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---------CC---------------------CHHHHHHHHHHHHHccCCCCCCCC
Confidence 444555566666667777665442 12 388899999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 130 NLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 130 ~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
|..+++++++.+++|+.+++++++.++..++.
T Consensus 56 t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 56 TDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999987753
No 170
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.42 E-value=6.4e-13 Score=142.61 Aligned_cols=123 Identities=19% Similarity=0.322 Sum_probs=107.5
Q ss_pred HHHHHHhcccccccCCCHHHHHHHHHhccc-eeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcc
Q 006072 224 TLYLPYIEKVPLFKGCSSEFINQIVIRLHE-EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 302 (662)
Q Consensus 224 ~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~-~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~ 302 (662)
....+.+..+++|.+++++.+..++..+.. +.|++|++|+++||.++.+|||.+|.|+++.. +. ..+..+.+|++
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~---~~-~~~~~l~~G~~ 408 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GK-GVVCTLHEGDD 408 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEET---TT-EEEEEEETTCE
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEc---CC-eeEEEecCCCE
Confidence 445678899999999999999999999985 49999999999999999999999999999862 22 37889999999
Q ss_pred ccchhhhccCCccceEEEcc-ceeEEEecHHHHHHHHHHhhhcHHHHHH
Q 006072 303 FGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNIIDIYFCDGRKVLT 350 (662)
Q Consensus 303 fGe~~~l~~~~~~~~~~a~~-~~~l~~l~~~~~~~~l~~~~~~~~~il~ 350 (662)
|||.+++.+.|+.++++|.+ +|+++.|++++|.+++..+|.....+..
T Consensus 409 fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e 457 (469)
T 1o7f_A 409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 457 (469)
T ss_dssp ECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC------
T ss_pred EEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHh
Confidence 99999999999999999998 7999999999999999999998777544
No 171
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.42 E-value=9.1e-13 Score=127.99 Aligned_cols=114 Identities=21% Similarity=0.239 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcc---ceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCc--c
Q 006072 241 SEFINQIVIRLH---EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ--P 315 (662)
Q Consensus 241 ~~~~~~l~~~~~---~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~--~ 315 (662)
++.++.|..... .+.|++|++|+++|+.++.+|||.+|.|+++....+|++..+..+++|++||+.+++.+.|. .
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 667788888888 99999999999999999999999999999999888999999999999999999999998874 5
Q ss_pred ceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhc
Q 006072 316 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 354 (662)
Q Consensus 316 ~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~ 354 (662)
++++|.++|+++.+++++|.+++..+|.....++..+.+
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 148 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS 148 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999888877655
No 172
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.41 E-value=1.3e-12 Score=126.39 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHH--hccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCc-
Q 006072 238 GCSSEFINQIVI--RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ- 314 (662)
Q Consensus 238 ~~~~~~~~~l~~--~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~- 314 (662)
+++++.+.++.. .++.+.|++|++|+++||..+++|||.+|.|+++....+|++..+..+ +|++||+.+++.+.++
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~~ 81 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSV 81 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBS
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCcC
Confidence 578888888885 599999999999999999999999999999999988889999999999 9999999999998874
Q ss_pred -cceEEEc-cceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 315 -PYTVQVC-ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 315 -~~~~~a~-~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
..++.|. ++|+++.+++++|.+++..+|.....++..+...
T Consensus 82 ~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 124 (238)
T 2bgc_A 82 GYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQ 124 (238)
T ss_dssp CCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 7778887 5999999999999999999999998888777553
No 173
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.40 E-value=9.1e-13 Score=154.20 Aligned_cols=122 Identities=24% Similarity=0.309 Sum_probs=110.3
Q ss_pred HHHHHHHhcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeec--CCcccEEEEeCCC
Q 006072 223 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEE--NGTEDYVSYLHPN 300 (662)
Q Consensus 223 ~~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~--~~~~~~~~~l~~G 300 (662)
.+.....|+.+++|.++++..+.+|+..|..+.|++|++||++||.++++|+|.+|.|.++.... ++.+..+..+++|
T Consensus 37 l~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G 116 (999)
T 4f7z_A 37 VDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIG 116 (999)
T ss_dssp HHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETT
T ss_pred HHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCC
Confidence 34555778999999999999999999999999999999999999999999999999999986433 3456678899999
Q ss_pred ccccchhhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcH
Q 006072 301 SSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDG 345 (662)
Q Consensus 301 ~~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~ 345 (662)
++||| +++.+.||+++++|.++|+++++++++|..++..+|+..
T Consensus 117 ~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 117 TAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp CEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred cchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 99999 899999999999999999999999999999999887543
No 174
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.34 E-value=2.3e-12 Score=142.75 Aligned_cols=127 Identities=20% Similarity=0.334 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcccccccCCCHHHHHHHHHhcc-ceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEE
Q 006072 218 RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLH-EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSY 296 (662)
Q Consensus 218 ~~~i~~~~~~~~l~~~~~f~~~~~~~~~~l~~~~~-~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~ 296 (662)
|.+.......+.+.++++|.+++++.+..++..+. .+.|++|++|+++||.++.+|||.+|.|+++.. |+ ..+..
T Consensus 22 r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~---g~-~il~~ 97 (694)
T 3cf6_E 22 RTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GK-GVVCT 97 (694)
T ss_dssp CCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET---TT-EEEEE
T ss_pred CCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe---CC-EEEEE
Confidence 44334445667889999999999999999999998 789999999999999999999999999999863 33 57889
Q ss_pred eCCCccccchhhhccCCccceEEEcc-ceeEEEecHHHHHHHHHHhhhcHHHH
Q 006072 297 LHPNSSFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNIIDIYFCDGRKV 348 (662)
Q Consensus 297 l~~G~~fGe~~~l~~~~~~~~~~a~~-~~~l~~l~~~~~~~~l~~~~~~~~~i 348 (662)
+.+|++||+.+++.+.+++++++|.+ +|+++.+++++|.+++..+|.....+
T Consensus 98 l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~~l 150 (694)
T 3cf6_E 98 LHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 150 (694)
T ss_dssp EETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCEEE
T ss_pred eCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 99999999999999999999999999 59999999999999999999775543
No 175
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.28 E-value=9e-12 Score=116.47 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=85.8
Q ss_pred eeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEecHHH
Q 006072 254 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 333 (662)
Q Consensus 254 ~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~~~ 333 (662)
+.|++|++|+++|+..+.+|||.+|.|+++....+|++..+..+.+|++||+ +++.+.|++++++|.++|+++.+++++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 5799999999999999999999999999998888899999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhcHHHHHHHHhc
Q 006072 334 FTNIIDIYFCDGRKVLTNLLQ 354 (662)
Q Consensus 334 ~~~~l~~~~~~~~~il~~l~~ 354 (662)
|. |.....++..+..
T Consensus 81 ~~------p~~~~~~~~~l~~ 95 (195)
T 3b02_A 81 MD------HEALHRVARNLAR 95 (195)
T ss_dssp CC------HHHHHHHHHHHHH
T ss_pred cC------HHHHHHHHHHHHH
Confidence 98 6666666665544
No 176
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.23 E-value=4.1e-11 Score=140.23 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=100.9
Q ss_pred HHHHHHhcccccccCCCHHHHHHHHHhccce-eccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcc
Q 006072 224 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEE-FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 302 (662)
Q Consensus 224 ~~~~~~l~~~~~f~~~~~~~~~~l~~~~~~~-~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~ 302 (662)
+...+.+..+|.|.+++....++|+..+... ++..|++|++|||.++.+|||.+|.|+++. . .+..+..+++|++
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~-~~~~v~~L~~Gd~ 408 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---Y-GKGVVCTLHEGDD 408 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---T-TTEEEEEEETTCE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---c-CCcceEEecCCCc
Confidence 4556778999999999999999999999865 567899999999999999999999999885 1 2235788999999
Q ss_pred ccchhhhccCCccceEEEccc-eeEEEecHHHHHHHHHH
Q 006072 303 FGEVSILCNIPQPYTVQVCEL-CRLLRIDKQSFTNIIDI 340 (662)
Q Consensus 303 fGe~~~l~~~~~~~~~~a~~~-~~l~~l~~~~~~~~l~~ 340 (662)
|||.+++.+.||.++++|.++ |+++++++++|..++..
T Consensus 409 FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp ECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred ccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 999999999999999999985 99999999999998863
No 177
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.20 E-value=3.9e-11 Score=117.82 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 106 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 106 ~Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
.|..|+||+++|||||||||++|.+..+++++++.+++|++++++++|.+.+.+.+
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48899999999999999999999999999999999999999999999988887754
No 178
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.18 E-value=3.3e-11 Score=113.30 Aligned_cols=100 Identities=21% Similarity=0.222 Sum_probs=86.0
Q ss_pred HHHhccceeccCCCeEEecCCcc--CeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccce
Q 006072 247 IVIRLHEEFFLPGEVIMEKGNVV--DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELC 324 (662)
Q Consensus 247 l~~~~~~~~~~~ge~I~~~g~~~--~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~ 324 (662)
|...++.+.|++|++|+++|+.. +.+|||.+|.|+++....+|++..+..+.+|++||+ +++.+.|+.++++|.++|
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~ 79 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDV 79 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCE
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccE
Confidence 34667889999999999999999 999999999999998888999999999999999999 999999999999999999
Q ss_pred eEEEecHHHHHHHHHHhhhcHHHHHHHHhc
Q 006072 325 RLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 354 (662)
Q Consensus 325 ~l~~l~~~~~~~~l~~~~~~~~~il~~l~~ 354 (662)
+++.+ +++|. |.....++..+..
T Consensus 80 ~v~~i-~~~~~------p~~~~~~~~~l~~ 102 (202)
T 2zcw_A 80 RLEPL-PENPD------PELLKDLAQHLSQ 102 (202)
T ss_dssp EEEEC-CSSCC------HHHHHHHHHHHHH
T ss_pred EEEEE-hHhcC------HHHHHHHHHHHHH
Confidence 99999 98886 6666666655543
No 179
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.16 E-value=3.3e-11 Score=119.52 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 106 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 106 ~Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
.|..||||+++|+|||||||++|.+..+++++++.+++|++++++++|.+...+.+
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~ 151 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 151 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999998866
No 180
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.15 E-value=1.4e-10 Score=114.78 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 106 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 106 ~Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
.|..|+||+++|||||||||+.|.+..+++++++.+++|++++++++|.+.+.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999988866
No 181
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.15 E-value=1.9e-12 Score=116.21 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 106 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 106 ~Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
.|..|+||+++|+|||||||+.|.|..+++++++++++|+++++++++.+++.+.+
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37779999999999999999999999999999999999999999999999988866
No 182
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.05 E-value=4.6e-10 Score=109.43 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 106 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 106 ~Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
.|..|+||+++|+|||||||++|.|..+++|+++++++|+.+++++++.++..+.+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999998854
No 183
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.03 E-value=1.7e-09 Score=106.75 Aligned_cols=99 Identities=18% Similarity=0.321 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCceEEeeccCCCCCcchhhccchHHHHHHHHHHHHHHhhcccCCCcc
Q 006072 50 IVKLIAVELYCSHIAACIFYYLATTLPP--EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVH 127 (662)
Q Consensus 50 ~~~l~~~~~~~~H~~aC~~~~i~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~ttvGygdi~ 127 (662)
++-+++.+++..-++|++||.++....+ ...+..|.++... ...+..+|||+++|+|||||||+.
T Consensus 46 llif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~~-------------~~sf~~af~fSv~T~TTvGYGd~~ 112 (340)
T 3sya_A 46 LLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTN-------------LNGFVSAFLFSIETETTIGYGYRV 112 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBSC-------------CCSTTHHHHHHHHHHSCCCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhcc-------------ccCHHHHHhhhheeeeeecCCCcc
Confidence 4445555666667789999998743111 1111223222111 123677999999999999999999
Q ss_pred cC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 128 AV--NLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 128 p~--~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
|. ++..++++++.+++|+++.|+++|.+..-+..
T Consensus 113 p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 113 ITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp BCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 97 78899999999999999999999988887755
No 184
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.97 E-value=5.2e-10 Score=110.92 Aligned_cols=122 Identities=13% Similarity=0.130 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEeeccCCCCC
Q 006072 16 VRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYS 94 (662)
Q Consensus 16 ~~~lrl~rllRl~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~H~~aC~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 94 (662)
++++|++|++|++|+.+....++.... .......+..+++.++++.-.+|++-+.+-.. ..
T Consensus 113 ~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~----~~-------------- 174 (285)
T 3rvy_A 113 FEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGE----RF-------------- 174 (285)
T ss_dssp CTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTT----TC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----cc--------------
Confidence 455666666666666665554443322 11122234444444444444455543333211 00
Q ss_pred cchhhccchHHHHHHHHHHHHHHhhcccCC-Ccc-cCChhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 95 YADFREIGFWKSYITSMYASVVTMTTVGYG-DVH-AVNLRE----MVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 95 ~~~~~~~~~~~~Y~~s~yw~~~t~ttvGyg-di~-p~~~~e----~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
++.+..+..|+||+++|+||+||| |+. |.+... ..+++++++.|+++.+.++|.+.+-+.+
T Consensus 175 ------~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~ 241 (285)
T 3rvy_A 175 ------PEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAI 241 (285)
T ss_dssp ------HHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ------ccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123456889999999999999999 986 776644 7888999999999999999999888766
No 185
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.96 E-value=2.2e-09 Score=117.52 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEeeccCCCCCcchhhccchHHHHHHHHHHHHHHhhcccCCCcc
Q 006072 48 SRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVH 127 (662)
Q Consensus 48 ~~~~~l~~~~~~~~H~~aC~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~ttvGygdi~ 127 (662)
.++..+++.+++++++.+|+|+++...... ..| .|+.||||+++|||||||||++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~---------------------~~~~~~y~~~~t~tTvGygd~~ 72 (565)
T 4gx0_A 18 KVLLLYCAFLLVMLLAYASIFRYLMWHLEG----RAY---------------------SFMAGIYWTITVMTTLGFGDIT 72 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCC---------------------CHHHHHHHHHHHHTTCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCC---------------------chhhhhheeeeeeeeecCCCcC
Confidence 346667777777778888888776542111 112 2688999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 006072 128 AVNLREMVFIMIYVSFDMILGAYLIGN-MTALI 159 (662)
Q Consensus 128 p~~~~e~~~~i~~~~~g~~~~~~~i~~-i~~~~ 159 (662)
|.|..+++++++++++|++++++.++. +...+
T Consensus 73 p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 73 FESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 55554
No 186
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.95 E-value=1.5e-09 Score=105.86 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhcccCCCcccCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 107 YITSMYASVVTMTTVGYGDVHAVNLREM------VFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 107 Y~~s~yw~~~t~ttvGygdi~p~~~~e~------~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
|++|+||+++|+|||||||+.|.+..++ +++++++++|+.+++++++.++.++..
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999998886 599999999999999999999998866
No 187
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.89 E-value=7.2e-09 Score=102.44 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCceEEeeccCCCCCcchhhccchHHHHHHHHHHHHHHhhcccCCCc
Q 006072 50 IVKLIAVELYCSHIAACIFYYLATTLPP---EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDV 126 (662)
Q Consensus 50 ~~~l~~~~~~~~H~~aC~~~~i~~~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~ttvGygdi 126 (662)
++-+++.+++..-++|.+||+++....+ .....+|.++... ...+..+|||+++|+|||||||+
T Consensus 48 ll~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~~-------------~~sf~~af~fSv~T~TTvGYGd~ 114 (343)
T 3spc_A 48 LLLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQ-------------VNGFVAAFLFSIETQTTIGYGFR 114 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEET-------------CCSHHHHHHHHHHHHSCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccc-------------cCCHHHHhheeeeeeEeecCCCc
Confidence 4445556666677788999987643211 1111223221110 12478899999999999999999
Q ss_pred ccC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 127 HAV--NLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 127 ~p~--~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
.|. ++..++++++.+++|+++.|+++|.+..-+.+
T Consensus 115 ~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 115 CVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp EECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 864 89999999999999999999999988887765
No 188
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.83 E-value=5e-09 Score=100.50 Aligned_cols=56 Identities=14% Similarity=0.354 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 106 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 106 ~Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
.|..|+||+++|+|||||||++|.|..+++++++++++|+.+++++++.++..+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999998876543
No 189
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.83 E-value=1.4e-08 Score=97.46 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhcccCCCcccCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 107 YITSMYASVVTMTTVGYGDVHAVNLR-------EMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 107 Y~~s~yw~~~t~ttvGygdi~p~~~~-------e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
|++|+||+++|+|||||||+.|.+.. .++++++++++|+.+++++++.+++++..
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999985 49999999999999999999999887754
No 190
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.51 E-value=6.9e-09 Score=105.57 Aligned_cols=55 Identities=24% Similarity=0.409 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 107 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 107 Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
|..|+||+++|+|||||||+.|.|..+++++++++++|+++++++++.+...+.+
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4559999999999999999999999999999999999999999999998887755
No 191
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.69 E-value=0.00017 Score=68.34 Aligned_cols=57 Identities=9% Similarity=0.176 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhcccCCCccc----CChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHc
Q 006072 105 KSYITSMYASVVTMTTVGYGDVHA----VNLREMVFIM-IYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 105 ~~Y~~s~yw~~~t~ttvGygdi~p----~~~~e~~~~i-~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
+.+..|+||...++||.||+|+.. .++...++.+ +..+.+.++...+++.+.+-+++
T Consensus 164 ~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 164 GDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQ 225 (229)
T ss_dssp SSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999622 1223334433 34444455566666655555443
No 192
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=89.53 E-value=0.44 Score=54.12 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhcccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006072 106 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 161 (662)
Q Consensus 106 ~Y~~s~yw~~~t~ttvGygdi~p~~~~e~~~~i~~~~~g~~~~~~~i~~i~~~~~~ 161 (662)
....++||++.++++.| ++..|.+...|++.++++++++++.+...+++++++..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46689999999999999 78999999999999999999999999999999999864
No 193
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=84.31 E-value=0.78 Score=39.26 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=14.2
Q ss_pred CchhHHHHhhCcchhhHHHHHHHHHHHHhHHHHH
Q 006072 1 MPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFF 34 (662)
Q Consensus 1 ~P~~~i~~~~~~~~~~~~lrl~rllRl~~~~~~~ 34 (662)
+|+.......+..+++|++|++|++|++|+.|++
T Consensus 94 lP~~~~~~~~~~lr~lRvlRllRv~Rllrl~r~~ 127 (147)
T 2kyh_A 94 VPAGLLALIEGHLAGLGLFRLVRLLRFLRILLII 127 (147)
T ss_dssp CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4665443321222334444444444444444443
No 194
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=81.22 E-value=1.5 Score=36.72 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHH
Q 006072 14 EAVRYLLWIRLYRVRKVSQFFHKMEK 39 (662)
Q Consensus 14 ~~~~~lrl~rllRl~~~~~~~~~~~~ 39 (662)
..+|.+|++|++|++|+.|+...++.
T Consensus 92 ~~lr~lRllRv~Rvlkl~r~~~~l~~ 117 (132)
T 1ors_C 92 AGLGLFRLVRLLRFLRILLIISRGSK 117 (132)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34556666666666666666555543
No 195
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=75.49 E-value=1.6 Score=46.11 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHH
Q 006072 16 VRYLLWIRLYRVRKVSQFFHKME 38 (662)
Q Consensus 16 ~~~lrl~rllRl~~~~~~~~~~~ 38 (662)
++++|++|++|++|+.++.+...
T Consensus 305 ~~~lrvlRllRvlRilkL~r~~~ 327 (514)
T 2r9r_B 305 RRVVQIFRIMRILRIFKLSRHSK 327 (514)
T ss_dssp HHHHHHHHHHGGGGGGGGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 55667777777777766655443
No 196
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=71.55 E-value=4.1 Score=39.22 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=11.5
Q ss_pred cchhhHHHHHHHHHHHHhH
Q 006072 12 RKEAVRYLLWIRLYRVRKV 30 (662)
Q Consensus 12 ~~~~~~~lrl~rllRl~~~ 30 (662)
..+.+|++|++|++|+.|.
T Consensus 112 ~~~~lr~~RilR~lrl~~~ 130 (285)
T 3rvy_A 112 GFEILRVLRVLRLFRLVTA 130 (285)
T ss_dssp SCTHHHHHGGGGGGHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666554
No 197
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=68.37 E-value=3.9 Score=34.87 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Q 006072 16 VRYLLWIRLYRVRKVSQFFHKMEKD 40 (662)
Q Consensus 16 ~~~lrl~rllRl~~~~~~~~~~~~~ 40 (662)
++++|++|++|++|+.+++..+...
T Consensus 106 lr~lRvlRllRv~Rllrl~r~~~~~ 130 (147)
T 2kyh_A 106 LAGLGLFRLVRLLRFLRILLIISRG 130 (147)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777777777666655433
No 198
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=66.92 E-value=17 Score=31.12 Aligned_cols=17 Identities=0% Similarity=-0.142 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006072 57 ELYCSHIAACIFYYLAT 73 (662)
Q Consensus 57 ~~~~~H~~aC~~~~i~~ 73 (662)
+++++-+.+++++++..
T Consensus 59 ~~~~i~~~a~~~~~~E~ 75 (155)
T 2a9h_A 59 LVIVLLAGSYLAVLAER 75 (155)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33334456666666654
No 199
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=65.02 E-value=16 Score=38.29 Aligned_cols=140 Identities=16% Similarity=0.108 Sum_probs=74.0
Q ss_pred hhhHhHHhccCCHHHHHHH----HHcCCCCCCCCCCCCcHHHHHHHcC-c-------------HHHHHHHHhcCCCCccc
Q 006072 381 ALKVNSAAYHGDLYQLEGL----IRAGADPNRTDYDGRSPLHLAASRG-Y-------------EEIMTFLIQKGVDINLK 442 (662)
Q Consensus 381 ~~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~~-~-------------~~~v~~Ll~~g~~~~~~ 442 (662)
...|...++.|+++....+ .+.|..+|.. -.+.|..|+... . .++.+.+.+.|..||..
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~---tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQY---HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3446666777776544433 3456655533 234444444321 1 24455556667666543
Q ss_pred CCCCCcHHHHHHHhCCHHHHH----HHHHcCCCCcccccchHHHHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCcHH
Q 006072 443 DNFGNTPLLEAIKYGNDGAAS----LLVKEGASLNVEEAGSFLCTAVARGDSDL----LKRVLSNGIDPNTRDYDLRTPL 514 (662)
Q Consensus 443 ~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L 514 (662)
.. .+.+...+..|+.+-+. .+.+.|..++...-.+.+...+..|+.+- .+.+.+.|..+|.... .+.+
T Consensus 107 ty--n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~Li 182 (501)
T 4g26_A 107 TF--TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AALL 182 (501)
T ss_dssp HH--HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHHH
T ss_pred HH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHHH
Confidence 21 13455556677765443 33456777766666666777777777653 3444456766654321 2334
Q ss_pred HHHHHhCcHHHHH
Q 006072 515 HVAASEGLYLMAK 527 (662)
Q Consensus 515 ~~A~~~~~~~~v~ 527 (662)
...+..|+.+-+.
T Consensus 183 ~~~~~~g~~d~A~ 195 (501)
T 4g26_A 183 KVSMDTKNADKVY 195 (501)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHhhCCCHHHHH
Confidence 4445566655433
No 200
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=63.12 E-value=10 Score=34.77 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=13.2
Q ss_pred hCcchhhHHHHHHHHHHHHh
Q 006072 10 SGRKEAVRYLLWIRLYRVRK 29 (662)
Q Consensus 10 ~~~~~~~~~lrl~rllRl~~ 29 (662)
....+.+|++|++|++|+.+
T Consensus 96 ~~~lr~lRllRllR~~r~~~ 115 (223)
T 1orq_C 96 LGLFRLVRLLRFLRILLIIS 115 (223)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777765
No 201
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=57.51 E-value=41 Score=26.74 Aligned_cols=66 Identities=14% Similarity=0.050 Sum_probs=41.6
Q ss_pred ccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEE
Q 006072 251 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 327 (662)
Q Consensus 251 ~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~ 327 (662)
+....++||..+-..--...+++++++|++++.. +++ ...+++|+++=- =.+.+. .+++.+++.++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i~i---p~~~~H--~~~~~~~~~~~ 103 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV---DGA---QRRLHQGDLLYL---GAGAAH--DVNAITNTSLL 103 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE---TTE---EEEECTTEEEEE---CTTCCE--EEEESSSEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE---CCE---EEEECCCCEEEE---CCCCcE--EEEeCCCcEEE
Confidence 3445678888776655556799999999998764 333 245889986532 113343 34555665543
No 202
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=57.21 E-value=13 Score=29.57 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=38.4
Q ss_pred CCcHHHHHHHHHhHcCCCC--CcccccCCCceeeeeeeeecCCeEEEeec
Q 006072 613 PQNIKDLIKTAAEQLDFRG--GDCILSSEGGKILDVDMINDDQKLYLIQE 660 (662)
Q Consensus 613 ~~~~~el~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 660 (662)
..+++.+++...+++.... -.++.+-+|.++.+++-+.||+ .|+|+.
T Consensus 39 ~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~~l~dl~dg~-~YVa~g 87 (108)
T 2dnf_A 39 LNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQ-FYVAVG 87 (108)
T ss_dssp HTCHHHHHHHHHHHCCCTTSSCCEEEETTCCEESSTTSCCSSC-BEEEEC
T ss_pred ccCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeCCHHHhCCCC-EEEEeC
Confidence 3689999999999887642 3677888999999988888888 888876
No 203
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=56.16 E-value=30 Score=36.19 Aligned_cols=108 Identities=14% Similarity=0.165 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH----hcCCCCcccCCCCCcHHHHHHHhCCHHH----HHH
Q 006072 393 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI----QKGVDINLKDNFGNTPLLEAIKYGNDGA----ASL 464 (662)
Q Consensus 393 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~ 464 (662)
.++++.+.+.|..+|... -.+.+...+..|+.+-+..++ +.|..++.... .+.+...+..|..+- .+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEAT--FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY--GPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHTTCCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee--hHHHHHHHHCCCHHHHHHHHHH
Confidence 356677777888776542 234566777888886655444 46776664431 234555667787654 445
Q ss_pred HHHcCCCCcccccchHHHHHHHcCCHHHHHHHH----HcCCCCC
Q 006072 465 LVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL----SNGIDPN 504 (662)
Q Consensus 465 Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll----~~g~~~~ 504 (662)
+.+.|..++...-.+.+...+..|+.+-+..++ +.|..++
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 556788888777777888888999987555544 4465554
No 204
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=53.83 E-value=32 Score=27.17 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=37.8
Q ss_pred eccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEe
Q 006072 255 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 329 (662)
Q Consensus 255 ~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l 329 (662)
.+.+|..+-...-...++++|++|.+.+.. ++. ...+++|+++= +=.+.+..+. +.+++.++.+
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i---~~~---~~~l~~Gd~i~---i~~~~~H~~~--~~~~~~~~~i 107 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF---DDQ---KIDLVPEDVLM---VPAHKIHAIA--GKGRFKMLQI 107 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE---TTE---EEEECTTCEEE---ECTTCCBEEE--EEEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE---CCE---EEEecCCCEEE---ECCCCcEEEE--eCCCcEEEEE
Confidence 355665544344445689999999998764 333 34589998652 1124454443 4456665544
No 205
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=53.27 E-value=43 Score=30.61 Aligned_cols=68 Identities=12% Similarity=0.183 Sum_probs=48.3
Q ss_pred ccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEe
Q 006072 251 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 329 (662)
Q Consensus 251 ~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l 329 (662)
+....+.||+.+-..--+.+.+++|++|++++.. +|.. ..+++|+++= + ....+-.+++.++|.++.+
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i---~~~~---~~l~~Gd~~~----~-p~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI---ENNK---KTISNGDFLE----I-TANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE---SSCE---EEEETTEEEE----E-CSSCCEEEEESSSEEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEE---CCEE---EEECCCCEEE----E-CCCCCEEEEECCCcEEEEE
Confidence 3455788999988877778899999999999875 3433 4578888542 1 2223345567888988876
No 206
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=48.81 E-value=14 Score=34.11 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006072 19 LLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFY 69 (662)
Q Consensus 19 lrl~rllRl~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~H~~aC~~~ 69 (662)
+|++|++|++|+.|....++.... .......+..+.+.++++.-.+|.+-+
T Consensus 101 lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~ 152 (229)
T 4dxw_A 101 LRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGA 152 (229)
T ss_dssp CTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443322 222233455555555555555555433
No 207
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=46.91 E-value=22 Score=29.46 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHH
Q 006072 15 AVRYLLWIRLYRVRKVSQFFHKM 37 (662)
Q Consensus 15 ~~~~lrl~rllRl~~~~~~~~~~ 37 (662)
.++.+|++|++|++|+.|.....
T Consensus 90 ~l~~lr~lRllRv~Rvlkl~r~~ 112 (132)
T 1ors_C 90 HLAGLGLFRLVRLLRFLRILLII 112 (132)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555554433
No 208
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=43.20 E-value=35 Score=27.52 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=30.2
Q ss_pred eeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 254 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 254 ~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
..+.||..+-.. ...+++++|++|++.+.. +|. ...+++||++
T Consensus 45 ~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~---~g~---~~~l~~GD~v 87 (119)
T 3lwc_A 45 GRYAPGQSLTET-MAVDDVMIVLEGRLSVST---DGE---TVTAGPGEIV 87 (119)
T ss_dssp EEECTTCEEEEE-CSSEEEEEEEEEEEEEEE---TTE---EEEECTTCEE
T ss_pred EEECCCCCcCcc-CCCCEEEEEEeCEEEEEE---CCE---EEEECCCCEE
Confidence 456677655444 266799999999998864 343 2458999976
No 209
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=42.33 E-value=88 Score=24.39 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=39.8
Q ss_pred ccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEe
Q 006072 251 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 329 (662)
Q Consensus 251 ~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l 329 (662)
+....+.||..+-..--...++++|++|.+.+.. +++. ..+++|+++=- =.+.+.. +++.+++.++.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~---~~l~~Gd~~~i---p~~~~H~--~~~~~~~~~~~v 109 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQET---YRVAEGQTIVM---PAGIPHA--LYAVEAFQMLLV 109 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TTEE---EEEETTCEEEE---CTTSCEE--EEESSCEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE---CCEE---EEECCCCEEEE---CCCCCEE--EEECCCceEEEE
Confidence 3444677777664433335689999999998764 3332 45888886531 1133333 344456665543
No 210
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=42.24 E-value=30 Score=30.18 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=39.2
Q ss_pred ceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEe
Q 006072 253 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 329 (662)
Q Consensus 253 ~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l 329 (662)
...++||...-.......++++|++|++++.. +++. ...+++||++ - -.+.+..+.-...+.|+++.+
T Consensus 83 ~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l--d~ge---~~~L~~GDsi-~---~~g~~H~~~N~g~~~ar~l~V 150 (172)
T 3es1_A 83 VVDMLPGKESPMHRTNSIDYGIVLEGEIELEL--DDGA---KRTVRQGGII-V---QRGTNHLWRNTTDKPCRIAFI 150 (172)
T ss_dssp EEEECTTCBCCCBCCSEEEEEEEEESCEEEEC--GGGC---EEEECTTCEE-E---ECSCCBEEECCSSSCEEEEEE
T ss_pred EEEECCCCCCCCeecCceEEEEEEeCEEEEEE--CCCe---EEEECCCCEE-E---eCCCcEEEEeCCCCCEEEEEE
Confidence 34566665432222233468899999999764 1133 2458999987 3 235555554444455665543
No 211
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=39.76 E-value=29 Score=30.42 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=35.5
Q ss_pred ccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcccc
Q 006072 251 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 304 (662)
Q Consensus 251 ~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fG 304 (662)
+....+.||......-...+++++|++|++.+.....++. ....+++||++=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~--~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR--DTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE--EEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc--EEEEECCCCEEE
Confidence 4555778887765553335699999999998876444432 245689998753
No 212
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=39.31 E-value=99 Score=26.99 Aligned_cols=88 Identities=16% Similarity=0.230 Sum_probs=55.1
Q ss_pred hcccccccCCCHHHHHHHHHhccceeccCCCeEEecCCccCeEEEE---EeCEEEEEeeecCCcccEEEEeCCCccccch
Q 006072 230 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFV---CLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 306 (662)
Q Consensus 230 l~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~~~~y~i---~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 306 (662)
.-.+|.|.+++.....+++.. .+||+|++.....+++.+. .+|.+.-+.+. ..|..+
T Consensus 11 ~I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit~Kv~d~~~~Hi~I~-----------E~~k~l--- 70 (178)
T 2xp1_A 11 FYKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLVIKFASDVFVHMKIE-----------EHSEHY--- 70 (178)
T ss_dssp GGGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEEEEEETTEEEEEEEE-----------ECSSCE---
T ss_pred eccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEEEEECCCcEEEEEEE-----------ECCCEE---
Confidence 346899999999988888887 3699999999887764333 24444444333 333210
Q ss_pred hhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 307 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 307 ~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
. .+.. ..+++++++..|-+--...+..++..
T Consensus 71 -~------------ig~~-----~fedLDElI~~yv~pm~~~~~~~~~h 101 (178)
T 2xp1_A 71 -T------------CSNK-----HFEDIDEVISVYVRPILRNLKSIKAH 101 (178)
T ss_dssp -E------------ETTE-----EESSHHHHHHHTHHHHHHHHHHHHHS
T ss_pred -E------------ECCc-----EECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 0 0000 24688899998876555555555543
No 213
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=38.11 E-value=1.2e+02 Score=24.19 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=44.8
Q ss_pred ccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccc-eeEEEe
Q 006072 251 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCEL-CRLLRI 329 (662)
Q Consensus 251 ~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~-~~l~~l 329 (662)
+....+.||..+-..--...++++|++|.+.+.. ++. ...+++|+++=- =.+.+..+ .+.+. |.++.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~i---p~~~~H~~--~~~~~~~~~l~v 111 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI---GEE---TRVLRPGMAYTI---PGGVRHRA--RTFEDGCLVLDI 111 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE---TTE---EEEECTTEEEEE---CTTCCEEE--ECCTTCEEEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE---CCE---EEEeCCCCEEEE---CCCCcEEe--EECCCCEEEEEE
Confidence 3445677777665444445689999999998764 333 245888986521 12344333 33333 554433
Q ss_pred ---cHHHHHHHHH
Q 006072 330 ---DKQSFTNIID 339 (662)
Q Consensus 330 ---~~~~~~~~l~ 339 (662)
.++++.+.+.
T Consensus 112 ~~p~~~d~~~~~~ 124 (126)
T 4e2g_A 112 FSPPREDYARMAE 124 (126)
T ss_dssp EESCCHHHHHHHH
T ss_pred ECCCCcchhhhhc
Confidence 4566665543
No 214
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=36.32 E-value=47 Score=28.74 Aligned_cols=59 Identities=8% Similarity=0.047 Sum_probs=33.6
Q ss_pred CccCeEEEEEeCEEEEEeeecCC---cccEEEEeCCCccccchhhhccCCccceEEEccceeEEEecH
Q 006072 267 NVVDQLYFVCLGKLEEVGIEENG---TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 331 (662)
Q Consensus 267 ~~~~~~y~i~~G~v~~~~~~~~~---~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~ 331 (662)
+..+++|++++|.+.+-..+ +| .+..--.+++|++|=-- .+.|..- ++...+..+.+.+
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d-~g~~~~~~~dv~i~eGdmfllP---~gvpHsP--~r~~e~v~lviEr 113 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVD-ETDAEPKFIDIIINEGDSYLLP---GNVPHSP--VRFADTVGIVVEQ 113 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEE-CSSSSCEEEEEEECTTEEEEEC---TTCCEEE--EECTTCEEEEEEE
T ss_pred CCCceEEEEEeCEEEEEEEc-CCCcccceeeEEECCCCEEEcC---CCCCcCC--cccCCcEEEEEEe
Confidence 34568999999999887644 34 11223458999987421 1333322 2234555555543
No 215
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.78 E-value=23 Score=27.02 Aligned_cols=49 Identities=12% Similarity=0.329 Sum_probs=34.9
Q ss_pred cCCcHHHHHHHHHhHcCCCC-Ccc-cccCCCceeee---eeeeecCCeEEEeec
Q 006072 612 IPQNIKDLIKTAAEQLDFRG-GDC-ILSSEGGKILD---VDMINDDQKLYLIQE 660 (662)
Q Consensus 612 l~~~~~el~~~~~~~~~~~~-~~~-~~~~~~~~~~~---~~~~r~~~~~~~~~~ 660 (662)
.-.+++||+..+..+|.... +.. ++.+||.+++| +...-|+..+.++..
T Consensus 26 ~A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp~nT~lmvL~~ 79 (91)
T 2eel_A 26 MASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEK 79 (91)
T ss_dssp EESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSCSSEEEEEEET
T ss_pred EcCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCCCCCEEEEEcC
Confidence 35789999999999988732 233 35567888866 666777777766653
No 216
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=34.63 E-value=92 Score=23.46 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=38.7
Q ss_pred cceeccCCCeEEecCCc-cCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEe
Q 006072 252 HEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 329 (662)
Q Consensus 252 ~~~~~~~ge~I~~~g~~-~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l 329 (662)
....+.||..+-..--. .+++++|++|.+.+.. ++. ...+++|+++=- =.+.+..+.....+.+.++.+
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~---~~~l~~Gd~~~i---p~~~~H~~~~~~~~~~~~~~v 100 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE---EALLAPGMAAFA---PAGAPHGVRNESASPALLLVV 100 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE---EEEECTTCEEEE---CTTSCEEEECCSSSCEEEEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEEEE---CCCCcEEeEeCCCCCEEEEEE
Confidence 34467777776443323 3579999999998764 232 345889986521 113444433333344555443
No 217
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=34.52 E-value=1.1e+02 Score=23.88 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=39.8
Q ss_pred ccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEe
Q 006072 251 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 329 (662)
Q Consensus 251 ~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l 329 (662)
+....+.||..+-..--...++++|++|.+.+.. ++. ...+.+|+++=- =.+.+.. +++.+++.++.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~i---p~~~~H~--~~~~~~~~~l~v 103 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV---DGV---IKVLTAGDSFFV---PPHVDHG--AVCPTGGILIDT 103 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE---TTE---EEEECTTCEEEE---CTTCCEE--EEESSCEEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE---CCE---EEEeCCCCEEEE---CcCCcee--eEeCCCcEEEEE
Confidence 3445677777653333335689999999998764 333 345899986421 1133333 344456666554
No 218
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=34.40 E-value=48 Score=34.49 Aligned_cols=60 Identities=10% Similarity=0.167 Sum_probs=42.7
Q ss_pred HHHHHHhccceeccCCCeEEecCCc-cCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 244 INQIVIRLHEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 244 ~~~l~~~~~~~~~~~ge~I~~~g~~-~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
+..+-..+....+.||..+-..=-+ .+++++|++|...+...+.+|.......+++||+|
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 4445556667788888866443323 57999999999998776666665555678999976
No 219
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=34.39 E-value=79 Score=31.07 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=23.4
Q ss_pred chhHHHH-hhCcchhhHHHHHHHHHHHHhHHHHHHHH
Q 006072 2 PWDLIYK-ASGRKEAVRYLLWIRLYRVRKVSQFFHKM 37 (662)
Q Consensus 2 P~~~i~~-~~~~~~~~~~lrl~rllRl~~~~~~~~~~ 37 (662)
|+..+.. .....+++|++|++|++|..+..+.+.+.
T Consensus 85 p~~~~~~~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~ 121 (355)
T 3beh_A 85 PLAAFLLDGSPDWSLYCAVWLLKPLRDSTFFPVLGRV 121 (355)
T ss_dssp HHHHHHSCCSGGGGGGGGGGGSHHHHTCSSHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544322 23567888888888888887766655543
No 220
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=33.80 E-value=34 Score=28.37 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=36.1
Q ss_pred cCCcHHHHHHHHHhHcCCCC---C-cccccCCCceeee---eeeeecCCeEEEeec
Q 006072 612 IPQNIKDLIKTAAEQLDFRG---G-DCILSSEGGKILD---VDMINDDQKLYLIQE 660 (662)
Q Consensus 612 l~~~~~el~~~~~~~~~~~~---~-~~~~~~~~~~~~~---~~~~r~~~~~~~~~~ 660 (662)
.-.+++||+..+..+|.... + .-++.+||.+++| +...-|+..+.++..
T Consensus 80 ~A~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp~nT~LmvL~~ 135 (145)
T 1ibx_B 80 AASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALAS 135 (145)
T ss_dssp CCSSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSCSSCBEEEECS
T ss_pred EcCCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCCCCCEEEEECC
Confidence 45789999999999988743 2 3445577888866 777778887777653
No 221
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=33.51 E-value=54 Score=33.90 Aligned_cols=55 Identities=9% Similarity=0.108 Sum_probs=38.9
Q ss_pred HhccceeccCCCeEEecCCc-cCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 249 IRLHEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 249 ~~~~~~~~~~ge~I~~~g~~-~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
..+....+.||..+-..--+ ..++++|++|...+...+.+|.......+++||+|
T Consensus 338 is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 338 LSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp CCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 34555677888766444333 57999999999998776666655555678999876
No 222
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=33.15 E-value=90 Score=24.16 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=30.6
Q ss_pred cceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 252 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 252 ~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
....+.||+.-.. -...++++|++|.+.+.. +++.. ..+++||++
T Consensus 34 ~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i--~~g~~---~~l~~GD~i 78 (101)
T 1o5u_A 34 PIWEKEVSEFDWY--YDTNETCYILEGKVEVTT--EDGKK---YVIEKGDLV 78 (101)
T ss_dssp CEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE--TTCCE---EEEETTCEE
T ss_pred EEEEeCCCccccc--CCceEEEEEEeCEEEEEE--CCCCE---EEECCCCEE
Confidence 3456777776554 335799999999998764 11332 458899965
No 223
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=33.03 E-value=92 Score=24.00 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=30.7
Q ss_pred cceeccCCCeEEec--CCc-cCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 252 HEEFFLPGEVIMEK--GNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 252 ~~~~~~~ge~I~~~--g~~-~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
....+.||..+-.. --. ..++++|++|.+.+.. +++ ...+++|+++
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~ 72 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DGH---TQALQAGSLI 72 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TTE---EEEECTTEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 34467788766443 223 5689999999998764 332 2458888865
No 224
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=32.57 E-value=46 Score=25.84 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=36.8
Q ss_pred EcCCcHHHHHHHHHhHcCCCC---Cccc-ccCCCceeee---eeeeecCCeEEEeec
Q 006072 611 WIPQNIKDLIKTAAEQLDFRG---GDCI-LSSEGGKILD---VDMINDDQKLYLIQE 660 (662)
Q Consensus 611 ~l~~~~~el~~~~~~~~~~~~---~~~~-~~~~~~~~~~---~~~~r~~~~~~~~~~ 660 (662)
-.-.+++||+..+..+|.... +..+ +.+||.+++| +...-|+..+.++..
T Consensus 34 V~A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~ 90 (100)
T 1f2r_I 34 VAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVALAC 90 (100)
T ss_dssp EEESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEECS
T ss_pred EEcCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCCCCCEEEEEcC
Confidence 345799999999999998843 2333 5678888866 777788887777653
No 225
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=32.42 E-value=52 Score=28.51 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=24.4
Q ss_pred ccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcccc
Q 006072 268 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 304 (662)
Q Consensus 268 ~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fG 304 (662)
..+++|++++|.+.+-..+ +|+... -.+++|++|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d-~g~~~~-v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWV-DGRRER-ADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEE-TTEEEE-EEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEc-CCceee-EEECCCCEEE
Confidence 4568999999999877533 343223 4589999873
No 226
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=31.96 E-value=93 Score=26.72 Aligned_cols=69 Identities=19% Similarity=0.045 Sum_probs=39.6
Q ss_pred cceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEE-ccceeEEEe
Q 006072 252 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV-CELCRLLRI 329 (662)
Q Consensus 252 ~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a-~~~~~l~~l 329 (662)
....+.||..+-..--...++++|++|.+.+.. ++. ...+++|+++= +-.+.+..+.... .+.+.++.+
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i~---ip~~~~H~~~n~~~~~~~~~l~i 128 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL---DDR---VEPLTPLDCVY---IAPHAWHQIHATGANEPLGFLCI 128 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE---TTE---EEEECTTCEEE---ECTTCCEEEEEESSSCCEEEEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE---CCE---EEEECCCCEEE---ECCCCcEEEEeCCCCCCEEEEEE
Confidence 344566666543333345789999999998764 333 34578998652 2224454444333 445555544
No 227
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=30.58 E-value=58 Score=33.81 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=41.8
Q ss_pred HHHHHHhccceeccCCCeEEecC-CccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 244 INQIVIRLHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 244 ~~~l~~~~~~~~~~~ge~I~~~g-~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
+..+-..+....+.||..+-..- ...+++++|++|.+.+...+.+|....-..+++||+|
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~ 422 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLL 422 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEE
Confidence 44554566677788887654433 3357999999999988766665554444668999976
No 228
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=30.21 E-value=62 Score=33.71 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=45.7
Q ss_pred HHHHHHHhccceeccCCCeEEecC-CccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 243 FINQIVIRLHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 243 ~~~~l~~~~~~~~~~~ge~I~~~g-~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
.+..+-..+....+.||-++-..= -.++++.+|++|.+.+...+.+|.......+++||+|
T Consensus 388 ~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~ 449 (531)
T 3fz3_A 388 ILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLF 449 (531)
T ss_dssp HHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEE
Confidence 455555666777888888775442 3367999999999998877777766666789999986
No 229
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=30.13 E-value=62 Score=26.88 Aligned_cols=64 Identities=8% Similarity=0.130 Sum_probs=37.3
Q ss_pred EecCCccCeEEEEEeCEEEEEeeecC--CcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEecH
Q 006072 263 MEKGNVVDQLYFVCLGKLEEVGIEEN--GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 331 (662)
Q Consensus 263 ~~~g~~~~~~y~i~~G~v~~~~~~~~--~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~ 331 (662)
++.-+..|++|+|++|++.+...+.. +.+...-.+++|++|=--. |. .-.-.|.+.|.++.+..
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPk---Gv--eH~p~a~~e~~vLLiEp 109 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPA---EC--WFYSITQKDTKMMYVQD 109 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECT---TC--EEEEEECTTCEEEEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCC---Cc--cCcccCCCceEEEEEEe
Confidence 34445668999999999988754321 1112234578888763110 11 12334567788877754
No 230
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=29.50 E-value=4.3e+02 Score=27.82 Aligned_cols=68 Identities=10% Similarity=0.181 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhhccHhHHHhhchH------HHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHh
Q 006072 183 RLGRDIRDQIIGHLRLQYESSYTEASVLQDIPI------SIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIR 250 (662)
Q Consensus 183 ~l~~~l~~~i~~~~~~~~~~~~~~~~~l~~Lp~------~L~~~i~~~~~~~~l~~~~~f~~~~~~~~~~l~~~ 250 (662)
.+|+++.+++..||+..|..+...+++++.|-. ..-+++...+...++..+.+|...+.+.+.-.+..
T Consensus 442 ~~~~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~L 515 (603)
T 4b8b_A 442 GINNDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVL 515 (603)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 578999999999999999888776666555432 33467888999999999999999999887654443
No 231
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=29.06 E-value=60 Score=26.09 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=29.1
Q ss_pred eccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcccc
Q 006072 255 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 304 (662)
Q Consensus 255 ~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fG 304 (662)
...||..-+.. +..+++++|++|.+.+.. ++|.. ..+++||.|-
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~--ddG~~---~~l~aGD~~~ 91 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQ--ADADP---VKIGPGSIVS 91 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEE--TTCCC---EEECTTEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEe--CCCeE---EEECCCCEEE
Confidence 44556555444 334589999999998864 34543 4589999764
No 232
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=27.92 E-value=70 Score=26.12 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=29.7
Q ss_pred cceeccCCCeEEecCCc-cCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 252 HEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 252 ~~~~~~~ge~I~~~g~~-~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
....+.||..+-..--. ..++++|++|.+.+.. ++. ...+++||++
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i 106 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGK---DVPIKAGDVC 106 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTE---EEEEETTEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEE---CCE---EEEeCCCcEE
Confidence 34467787765332222 3589999999998764 333 3457888865
No 233
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=27.56 E-value=1e+02 Score=27.32 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=33.3
Q ss_pred ccceeccCCCeEEec-CCccCeEEEEEeCEEEEEeeecC--CcccEEEEeCCCccc
Q 006072 251 LHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEEN--GTEDYVSYLHPNSSF 303 (662)
Q Consensus 251 ~~~~~~~~ge~I~~~-g~~~~~~y~i~~G~v~~~~~~~~--~~~~~~~~l~~G~~f 303 (662)
+....+.||...-.. -....++++|++|++.+...+.+ +.+.....+++||+|
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~ 129 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETF 129 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEE
Confidence 344567777755333 23356999999999987653322 123234568999876
No 234
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=26.61 E-value=89 Score=26.66 Aligned_cols=45 Identities=18% Similarity=0.088 Sum_probs=28.8
Q ss_pred ceeccCCCeE--EecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 253 EEFFLPGEVI--MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 253 ~~~~~~ge~I--~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
...+.||... .+.-...+++++|++|.+.+.. ++. ...+++|+++
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~~---~~~l~~GD~i 93 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQG---EHPMVPGDCA 93 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TTE---EEEECTTCEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CCE---EEEeCCCCEE
Confidence 4456677643 2222233689999999998764 333 3458888865
No 235
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=25.93 E-value=1.1e+02 Score=24.44 Aligned_cols=68 Identities=16% Similarity=0.059 Sum_probs=37.5
Q ss_pred ceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEe
Q 006072 253 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 329 (662)
Q Consensus 253 ~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l 329 (662)
...+.||..+-..--...++++|++|.+.+.. +++. ..+++|+++=- =.+.+..+.....+.+.++.+
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~---~~l~~Gd~i~i---p~g~~H~~~~~~~~~~~~l~v 119 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK---EQGE---ETVEEGFYIFV---EPNEIHGFRNDTDSEVEFLCL 119 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEEC---SSCE---EEEETTEEEEE---CTTCCEEEECCSSSCEEEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEE---CCEE---EEECCCCEEEE---CCCCcEEeEeCCCCCEEEEEE
Confidence 34556665553333335689999999988764 3332 45788886521 114444443333334555443
No 236
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=25.72 E-value=65 Score=24.91 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=38.6
Q ss_pred ccCCCeEEecCCccCeEEEEEeCEEEEEeeecCC-cccEEEEeCCCccccchhhhccCCccceEEEccceeEEEecHHHH
Q 006072 256 FLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG-TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 334 (662)
Q Consensus 256 ~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~-~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~~~~ 334 (662)
..||+...+.-+..+++++|++|.+.+.. ++ . ...+++|+++= +=.+.+..... .+.+.++.++....
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~~---~~~l~~Gd~~~---ip~~~~H~~~~--~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDF---ADGG---SMTIREGEMAV---VPKSVSHRPRS--ENGCSLVLIELSDP 103 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEE---TTSC---EEEECTTEEEE---ECTTCCEEEEE--EEEEEEEEEECC--
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEE---CCCc---EEEECCCCEEE---ECCCCcEeeEe--CCCeEEEEEECCCc
Confidence 34555443333334799999999998764 22 3 24589998652 12244544433 35677777765443
No 237
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=25.54 E-value=1.5e+02 Score=23.38 Aligned_cols=70 Identities=14% Similarity=-0.031 Sum_probs=39.0
Q ss_pred ccceeccCCCeEEecCCcc-CeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEE
Q 006072 251 LHEEFFLPGEVIMEKGNVV-DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLR 328 (662)
Q Consensus 251 ~~~~~~~~ge~I~~~g~~~-~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~ 328 (662)
+....+.||..+-..--.. .++++|++|.+.+.. .++.. ..+++|+++= +=.+.+..+.....+.+.++.
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~~~~---~~l~~Gd~~~---i~~~~~H~~~n~~~~~~~~l~ 111 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ--GNGIV---THLKAGDIAI---AKPGQVHGAMNSGPEPFIFVS 111 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC--STTCE---EEEETTEEEE---ECTTCCCEEEECSSSCEEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE--CCCeE---EEeCCCCEEE---ECCCCEEEeEeCCCCCEEEEE
Confidence 3445677777664443333 578999999988652 13332 4578888652 122445544433334444443
No 238
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=25.41 E-value=1.3e+02 Score=27.18 Aligned_cols=67 Identities=22% Similarity=0.156 Sum_probs=42.6
Q ss_pred ccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEE-ccceeEEE
Q 006072 251 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV-CELCRLLR 328 (662)
Q Consensus 251 ~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a-~~~~~l~~ 328 (662)
+....+.||+.+-..--..++++++++|.+.+.. ++. ...+++|+++=- =.+.+. .+.+ .+.++++.
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~g~---~~~l~~Gd~i~i---p~~~~H--~~~~~~~~~~~ll 222 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV---DGK---PFIVKKGESAVL---PANIPH--AVEAETENFKMLL 222 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE---TTE---EEEEETTEEEEE---CTTSCE--EEECCSSCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE---CCE---EEEECCCCEEEE---CCCCcE--EEEeCCCCEEEEE
Confidence 4456788888876554556689999999998764 333 245788886421 113343 3445 66666554
No 239
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=25.21 E-value=90 Score=30.75 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=33.6
Q ss_pred cceeccCCCeEEec-CCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 252 HEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 252 ~~~~~~~ge~I~~~-g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
....+.||...-.. -...+++++|++|++.+...+.+|... ...+++||++
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~-~~~l~~GD~~ 106 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE-IADVDKGGLW 106 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE-EEEEETTEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE-EEEEcCCCEE
Confidence 34456777765332 233679999999999887655455332 3568999865
No 240
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=25.15 E-value=1.5e+02 Score=24.50 Aligned_cols=51 Identities=14% Similarity=-0.067 Sum_probs=28.4
Q ss_pred ceeccCCCeEEecC-CccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 253 EEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 253 ~~~~~~ge~I~~~g-~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
...+.||..+-..- ...+++++|++|.+.+...+..+.......+.+|+++
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEE
Confidence 34566766542222 2234899999999987652211110112457888864
No 241
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=24.63 E-value=1.4e+02 Score=31.04 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhhcccCCCc--ccCChhhHHHHHHHHHHHHHH
Q 006072 104 WKSYITSMYASVVTMTTVGYGDV--HAVNLREMVFIMIYVSFDMIL 147 (662)
Q Consensus 104 ~~~Y~~s~yw~~~t~ttvGygdi--~p~~~~e~~~~i~~~~~g~~~ 147 (662)
.++...|++-+++..||.||..+ ..-+..-.++.++.|++|.+-
T Consensus 304 ~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~ 349 (494)
T 3pjz_A 304 YDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCA 349 (494)
T ss_dssp HHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCT
T ss_pred HHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCc
Confidence 45777899999999999999744 444555667778888888543
No 242
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=24.58 E-value=56 Score=26.53 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=28.5
Q ss_pred eccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcccc
Q 006072 255 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 304 (662)
Q Consensus 255 ~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fG 304 (662)
...||..-.+..+ .+++++|++|.+.+.. ++|.. ..+++||++-
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~--~~g~~---~~l~~GD~~~ 98 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVD--PDGTV---HAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEEC--TTCCE---EEEETTCEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEE--CCCeE---EEECCCCEEE
Confidence 4456665544332 2789999999998763 23433 3589999763
No 243
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=24.51 E-value=2.2e+02 Score=22.55 Aligned_cols=79 Identities=13% Similarity=-0.021 Sum_probs=43.0
Q ss_pred eeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeE--EEecH
Q 006072 254 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRL--LRIDK 331 (662)
Q Consensus 254 ~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l--~~l~~ 331 (662)
..+.||...-..--...++++|++|...+.. +++ ...+++|+++=- -.+.+........+.++. +.++.
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i---~~~---~~~l~~Gd~~~i---~~~~~H~~~~~~~~~~~~~~i~f~~ 109 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRI---NDE---DFPVTKGDLIII---PLDSEHHVINNNQEDFHFYTIWWDK 109 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEE---TTE---EEEEETTCEEEE---CTTCCEEEEECSSSCEEEEEEEECH
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEE---CCE---EEEECCCcEEEE---CCCCcEEeEeCCCCCEEEEEEEECH
Confidence 3455555332222234589999999988764 333 345788886521 114444443333344444 34566
Q ss_pred HHHHHHHHHh
Q 006072 332 QSFTNIIDIY 341 (662)
Q Consensus 332 ~~~~~~l~~~ 341 (662)
+-+..++...
T Consensus 110 ~~~~~~~~~~ 119 (128)
T 4i4a_A 110 ESTLNFLTRL 119 (128)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6666655544
No 244
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=23.95 E-value=74 Score=29.90 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=37.2
Q ss_pred eEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEecH
Q 006072 261 VIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 331 (662)
Q Consensus 261 ~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l~~ 331 (662)
..++ -+..+++|++++|.+.+-..+ +|..+.+ .+++|++|=--. +.|. +-++.++|..+.+.+
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~d-~g~~~~V-~i~eGemfllP~---gv~H--sP~r~~et~gLviE~ 106 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVLE-QGKHRDV-VIRQGEIFLLPA---RVPH--SPQRFANTVGLVVER 106 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEE-TTEEEEE-EECTTEEEEECT---TCCE--EEEECTTCEEEEEEE
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEEe-CCceeeE-EECCCeEEEeCC---CCCc--CCcccCCeEEEEEee
Confidence 4444 455679999999999877543 4533333 488988773211 2332 223345666666653
No 245
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=23.87 E-value=69 Score=27.60 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=28.2
Q ss_pred eeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 254 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 254 ~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
..+.||..+-..--...++++|++|++.+.. +++ ...+++|+++
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v---~g~---~~~l~~GD~i 101 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV---GRA---VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE---TTE---EEEECTTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 3456665543333334579999999998764 333 3457888865
No 246
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=23.57 E-value=1.5e+02 Score=24.26 Aligned_cols=43 Identities=12% Similarity=-0.021 Sum_probs=28.5
Q ss_pred eeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcccc
Q 006072 254 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 304 (662)
Q Consensus 254 ~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fG 304 (662)
..+.||..-.+. ..+++++|++|.+.+.. +|.. ..+++||.|-
T Consensus 62 ~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~---~g~~---~~l~~GD~i~ 104 (133)
T 2pyt_A 62 MQWDNAFFPWTL--NYDEIDMVLEGELHVRH---EGET---MIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEC--SSEEEEEEEEEEEEEEE---TTEE---EEEETTCEEE
T ss_pred EEECCCCccccC--CCCEEEEEEECEEEEEE---CCEE---EEECCCcEEE
Confidence 356677432332 35799999999998764 3433 3589999763
No 247
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=23.53 E-value=1.5e+02 Score=29.53 Aligned_cols=75 Identities=11% Similarity=-0.077 Sum_probs=43.0
Q ss_pred ccceeccCCCeEEecCCcc-CeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEe
Q 006072 251 LHEEFFLPGEVIMEKGNVV-DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 329 (662)
Q Consensus 251 ~~~~~~~~ge~I~~~g~~~-~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l 329 (662)
+....+.||...-..--.. .++++|++|++.+.....+|... ...+++||+|=-- .+.+..+.....+.+.++.+
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~-~~~l~~GD~~~ip---~~~~H~~~n~~~~~~~~l~v 334 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHAR-TFNYQAGDVGYVP---FAMGHYVENIGDEPLVFLEI 334 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEE-EEEEESSCEEEEC---TTCBEEEEECSSSCEEEEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEE-EEEEcCCCEEEEC---CCCeEEEEECCCCCEEEEEE
Confidence 3444677877664333334 79999999999876543444322 3458899976321 13343333333345655554
No 248
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=23.47 E-value=1.3e+02 Score=26.33 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=37.7
Q ss_pred eccCCCeEE---ecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEE-EccceeEEEe
Q 006072 255 FFLPGEVIM---EKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQ-VCELCRLLRI 329 (662)
Q Consensus 255 ~~~~ge~I~---~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~-a~~~~~l~~l 329 (662)
.+.||...- .......++++|++|.+.+.. .. +.......+++||++=- =.+.++.+... ..+.|.++.+
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~-~~-~~~~~~~~l~~GD~~~~---~~~~~H~~~n~~~~~~~~~l~v 196 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKW-GD-KENPKEALLPTGASMFV---EEHVPHAFTAAKGTGSAKLIAV 196 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEE-SC-TTSCEEEEECTTCEEEE---CTTCCEEEEESTTSCCEEEEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEE-CC-cCCcccEEECCCCEEEe---CCCCceEEEecCCCCCeEEEEE
Confidence 455665432 112233689999999998775 22 11112456899997632 12445444332 2345665543
No 249
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=23.28 E-value=68 Score=32.85 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=37.3
Q ss_pred hccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcccc
Q 006072 250 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 304 (662)
Q Consensus 250 ~~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fG 304 (662)
.+....+.||..+-..--..++++||++|+..+.....++. ....+++||++=
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~--~~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR--DTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE--EEEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC--EEEEecCCCEEE
Confidence 44556888988776664445699999999998775444332 456689998763
No 250
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=22.99 E-value=1.9e+02 Score=28.85 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=43.0
Q ss_pred hhhhhHhHHhccCCHHHHHHHHHcCCCCCCC--------------CCCCCcHHHHHHHcCcHHHHHHHHh
Q 006072 379 ELALKVNSAAYHGDLYQLEGLIRAGADPNRT--------------DYDGRSPLHLAASRGYEEIMTFLIQ 434 (662)
Q Consensus 379 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~--------------~~~g~t~L~~A~~~~~~~~v~~Ll~ 434 (662)
.....-...+..|+...|+..+..|.|++.+ -.-|.|.+|+|++..+.+++..|+.
T Consensus 21 w~~l~ac~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 21 WLFLNACVGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhHHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 3344445567789999999999998887543 1358889999999999888888886
No 251
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=22.74 E-value=53 Score=24.98 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=28.7
Q ss_pred ceeccCCCeE-EecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcccc
Q 006072 253 EEFFLPGEVI-MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 304 (662)
Q Consensus 253 ~~~~~~ge~I-~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fG 304 (662)
...++||... .+.-+..+++++|++|.+.+.. .++. ....+++|+.+=
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~--~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGS--VTSQLTRGVSYT 70 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEE--EEEEECTTCCEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCC--EEEEEcCCCEEE
Confidence 3456777654 2222222359999999998764 2221 234689998763
No 252
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=22.72 E-value=86 Score=31.26 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=34.3
Q ss_pred ccceeccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 251 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 251 ~~~~~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
+....+.||..+-..--...++++|++|++++...+.+|+.. ...+++||++
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~-~~~l~~GD~~ 132 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF-IDDVGEGDLW 132 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE-EEEEETTEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE-EEEeCCCCEE
Confidence 344567788765333233679999999999987655455532 2368999865
No 253
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=22.63 E-value=81 Score=26.77 Aligned_cols=65 Identities=9% Similarity=-0.084 Sum_probs=35.7
Q ss_pred eccCCCeEEecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEE
Q 006072 255 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLR 328 (662)
Q Consensus 255 ~~~~ge~I~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~ 328 (662)
.+.||..+-..--...++++|++|++++.. +++ ...+++|+++= +=.+.+..+.....+.+.+++
T Consensus 50 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v---~g~---~~~l~~Gd~i~---ip~~~~H~~~n~g~~~~~~l~ 114 (156)
T 3kgz_A 50 EVDEGGYSTLERHAHVHAVMIHRGHGQCLV---GET---ISDVAQGDLVF---IPPMTWHQFRANRGDCLGFLC 114 (156)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEEEEEEEE---TTE---EEEEETTCEEE---ECTTCCEEEECCSSSCEEEEE
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEEE---ECCCCcEEeEeCCCCCEEEEE
Confidence 455665543333334579999999998764 333 34578888652 112444444333344444443
No 254
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=22.07 E-value=97 Score=26.70 Aligned_cols=52 Identities=10% Similarity=-0.024 Sum_probs=30.9
Q ss_pred cCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEe
Q 006072 269 VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 329 (662)
Q Consensus 269 ~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l 329 (662)
...++||++|.+.+.. +++. ..+.+|++|=-- .+.++.+.-...+.|+++.+
T Consensus 110 gEE~~yVLeG~v~vtl---~g~~---~~L~~Gds~~iP---~g~~H~~~N~~d~~Arll~V 161 (166)
T 2vpv_A 110 TYITFHVIQGIVEVTV---CKNK---FLSVKGSTFQIP---AFNEYAIANRGNDEAKMFFV 161 (166)
T ss_dssp EEEEEEEEESEEEEEE---TTEE---EEEETTCEEEEC---TTCEEEEEECSSSCEEEEEE
T ss_pred ceEEEEEEEeEEEEEE---CCEE---EEEcCCCEEEEC---CCCCEEEEECCCCCEEEEEE
Confidence 3579999999999875 3332 458899876321 13344433334444555543
No 255
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=21.81 E-value=2.1e+02 Score=25.40 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=57.4
Q ss_pred cccccccCCCHHHHHHHHHhccceeccCCCeEEecCCcc-CeEEE---EEeCEEEEEeeecCCcccEEEEeCCCccccch
Q 006072 231 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVV-DQLYF---VCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 306 (662)
Q Consensus 231 ~~~~~f~~~~~~~~~~l~~~~~~~~~~~ge~I~~~g~~~-~~~y~---i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 306 (662)
-.+|.|.+++-....+.+.. -..||+|++....+ +++.+ +.+|...-..+.+.+++.. -..|..
T Consensus 6 I~HP~F~n~~~~qAe~~L~~-----~~~Ge~iIRPSSkg~dhLtvTwKv~d~v~qHidI~E~~K~~~-------~slG~~ 73 (197)
T 3or8_A 6 INHPYYFPFNGKQAEDYLRS-----KERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENP-------LALGKV 73 (197)
T ss_dssp CCCTTEECCCHHHHHHHHTT-----SCTTCEEEEECSSCTTEEEEEEEEETTEEEEEEEEEESCSST-------TSCCSE
T ss_pred cCCCCcCCCCHHHHHHHHhc-----CCCCCEEEeeCCCCCCcEEEEEEECCCcEEEEEEEEcCCccc-------cccCce
Confidence 46899999998888887765 26899999998874 45433 3455544443333332210 001110
Q ss_pred hhhccCCccceEEEccceeEEEecHHHHHHHHHHhhhcHHHHHHHHhcC
Q 006072 307 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 355 (662)
Q Consensus 307 ~~l~~~~~~~~~~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l~~~ 355 (662)
-.+.+ -..+|+++++..+-.--...+..+..+
T Consensus 74 L~i~~-----------------~~y~DLDElI~~~V~pm~~~v~el~~h 105 (197)
T 3or8_A 74 LVVEG-----------------QRYHDLDQIIVEYLQNKIRLLNELTSN 105 (197)
T ss_dssp EEETT-----------------EEESSHHHHHHHTHHHHHHHHHHHHTS
T ss_pred EEECC-----------------eEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 00000 035689999998876666666666653
No 256
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=21.27 E-value=1.3e+02 Score=29.44 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=35.0
Q ss_pred ccceeccCCCeEEecCCc-cCeEEEEEeCEEEEEeeecCCcccEEEEeCCCcccc
Q 006072 251 LHEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 304 (662)
Q Consensus 251 ~~~~~~~~ge~I~~~g~~-~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fG 304 (662)
+....+.||..+-..--. ..++++|++|++.+...+.+|+ .....+++||+|=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~-~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGK-ASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTC-EEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCc-EEEEEECCCCEEE
Confidence 445577888766433223 3799999999998765444444 2235689999763
No 257
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=21.21 E-value=67 Score=19.79 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.2
Q ss_pred hhhhHhHHhccCCHHHHHHHHH
Q 006072 380 LALKVNSAAYHGDLYQLEGLIR 401 (662)
Q Consensus 380 ~~~~L~~A~~~g~~~~v~~Ll~ 401 (662)
..-.+..||..||++.++.|-.
T Consensus 13 iEQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 13 IRKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 3456788999999999988743
No 258
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=21.17 E-value=1e+02 Score=31.70 Aligned_cols=61 Identities=7% Similarity=0.140 Sum_probs=44.3
Q ss_pred HHHHHHHhccceeccCCCeEEecC-CccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 243 FINQIVIRLHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 243 ~~~~l~~~~~~~~~~~ge~I~~~g-~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
.+..+-..+....+.||-+.--.= -.+.++.++++|.+.+-..+.+|+......+.+||+|
T Consensus 317 ~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 378 (466)
T 3kgl_A 317 ILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLL 378 (466)
T ss_dssp THHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEE
Confidence 345555666667777776653332 2467899999999999887777776666789999986
No 259
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=21.03 E-value=1.7e+02 Score=26.90 Aligned_cols=70 Identities=11% Similarity=0.008 Sum_probs=42.8
Q ss_pred hccceeccCCCeEEe-cCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEE
Q 006072 250 RLHEEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLR 328 (662)
Q Consensus 250 ~~~~~~~~~ge~I~~-~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~ 328 (662)
.+....++||..+-. .--...+.++|++|+..... +++. ..+++||++- +=.+.|..+.....+.|+.+.
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~~~---~~l~~GD~~~---~~~~~pH~~~n~g~~~~~yl~ 236 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EENY---YPVTAGDIIW---MGAHCPQWYGALGRNWSKYLL 236 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTEE---EEEETTCEEE---ECTTCCEEEEEESSSCEEEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CCEE---EEcCCCCEEE---ECCCCCEEEEcCCCCCEEEEE
Confidence 455667889887654 33344589999999988654 4443 3589999753 122445554444444554443
No 260
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=20.83 E-value=22 Score=28.69 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=35.3
Q ss_pred EEcCCcHHHHHHHHHhHcCCCCCccc-ccCCCceeee---eeeeecCCeEEEee
Q 006072 610 LWIPQNIKDLIKTAAEQLDFRGGDCI-LSSEGGKILD---VDMINDDQKLYLIQ 659 (662)
Q Consensus 610 ~~l~~~~~el~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~r~~~~~~~~~ 659 (662)
--.-.+++|++..+.++|...++..+ +.+||.+++| +...-|+..+.++.
T Consensus 50 GV~A~SL~EL~~K~~~~l~l~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~ 103 (122)
T 1d4b_A 50 GLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQ 103 (122)
T ss_dssp EEEECCSSTHHHHHHHHHSCCSSCEEEETTTTEEECSTHHHHHSSSCCCCCEEC
T ss_pred eEEcCCHHHHHHHHHHHhccCCCcEEEEEeCCcEEechhHhhcCCCCCEEEEec
Confidence 33457899999999999888644444 4467888866 66666777666554
No 261
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=20.42 E-value=1.2e+02 Score=25.71 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=29.2
Q ss_pred cceeccCCCe-E-EecCCccCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccc
Q 006072 252 HEEFFLPGEV-I-MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 303 (662)
Q Consensus 252 ~~~~~~~ge~-I-~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~f 303 (662)
....+.||.. . .+.-....++++|++|.+.+.. +++ ...+++||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~---~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---END---QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TTE---EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CCE---EEEeCCCCEE
Confidence 3356677763 2 1222245689999999998764 333 2458999876
No 262
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=20.22 E-value=1.6e+02 Score=24.81 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=30.3
Q ss_pred cCeEEEEEeCEEEEEeeecCCcccEEEEeCCCccccchhhhccCCccceEEEccceeEEEe
Q 006072 269 VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 329 (662)
Q Consensus 269 ~~~~y~i~~G~v~~~~~~~~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~a~~~~~l~~l 329 (662)
.+++++|++|++++.. +|. ...+++||.|=- =.+.+..+. +.+.|+++.+
T Consensus 84 ~eE~~yVLeG~~~l~i---~g~---~~~l~~GD~i~i---P~G~~h~~~--n~~~a~~l~V 133 (151)
T 4axo_A 84 YDEIDYVIDGTLDIII---DGR---KVSASSGELIFI---PKGSKIQFS--VPDYARFIYV 133 (151)
T ss_dssp SEEEEEEEEEEEEEEE---TTE---EEEEETTCEEEE---CTTCEEEEE--EEEEEEEEEE
T ss_pred CcEEEEEEEeEEEEEE---CCE---EEEEcCCCEEEE---CCCCEEEEE--eCCCEEEEEE
Confidence 4689999999998774 443 245889986521 113333333 3356665554
Done!