Query 006073
Match_columns 662
No_of_seqs 363 out of 2256
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 17:57:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 2.2E-28 4.8E-33 279.3 14.7 371 129-542 114-545 (775)
2 COG0326 HtpG Molecular chapero 99.9 4.3E-22 9.3E-27 223.5 13.7 170 144-323 8-207 (623)
3 PRK05218 heat shock protein 90 99.9 1.6E-20 3.6E-25 215.2 23.7 306 143-533 6-350 (613)
4 PTZ00130 heat shock protein 90 99.8 3E-21 6.4E-26 223.2 13.3 197 110-324 42-270 (814)
5 PRK14083 HSP90 family protein; 99.8 8.6E-20 1.9E-24 208.2 23.0 302 145-532 5-329 (601)
6 KOG1845 MORC family ATPases [C 99.8 6.3E-22 1.4E-26 226.7 4.4 336 200-602 1-357 (775)
7 PTZ00272 heat shock protein 83 99.8 8.3E-20 1.8E-24 210.6 20.8 169 145-324 7-205 (701)
8 KOG0019 Molecular chaperone (H 99.7 2.8E-17 6E-22 182.2 11.0 151 164-325 59-235 (656)
9 KOG0020 Endoplasmic reticulum 99.7 2E-17 4.4E-22 178.7 8.9 159 151-325 88-281 (785)
10 PF13589 HATPase_c_3: Histidin 99.7 6E-18 1.3E-22 159.2 2.7 97 163-264 3-100 (137)
11 PF07496 zf-CW: CW-type Zinc F 99.6 1.4E-16 3E-21 125.8 0.7 45 552-596 1-49 (50)
12 PRK00095 mutL DNA mismatch rep 99.5 1.4E-12 3.1E-17 150.5 21.0 111 142-261 1-117 (617)
13 COG0323 MutL DNA mismatch repa 99.4 1.3E-12 2.8E-17 150.9 11.3 139 144-294 4-148 (638)
14 TIGR00585 mutl DNA mismatch re 99.4 4.7E-12 1E-16 134.8 12.3 141 142-295 1-148 (312)
15 COG1389 DNA topoisomerase VI, 99.1 2.5E-10 5.3E-15 124.4 10.6 136 159-299 33-183 (538)
16 KOG1979 DNA mismatch repair pr 99.0 1.7E-09 3.8E-14 120.3 9.3 139 143-294 7-152 (694)
17 KOG1978 DNA mismatch repair pr 98.9 3.2E-09 6.9E-14 120.6 8.4 138 145-294 2-145 (672)
18 PRK04184 DNA topoisomerase VI 98.8 5.7E-08 1.2E-12 110.2 13.8 96 163-261 37-142 (535)
19 PRK14868 DNA topoisomerase VI 98.6 1.3E-07 2.8E-12 109.9 11.6 130 162-297 46-189 (795)
20 TIGR01052 top6b DNA topoisomer 98.6 2.1E-07 4.5E-12 104.7 11.3 97 161-262 27-133 (488)
21 PRK05559 DNA topoisomerase IV 98.5 3.5E-07 7.7E-12 106.3 10.8 122 161-296 36-175 (631)
22 TIGR01055 parE_Gneg DNA topois 98.4 5.5E-07 1.2E-11 104.5 9.8 120 164-297 32-169 (625)
23 PRK14939 gyrB DNA gyrase subun 98.3 2.8E-06 6E-11 100.1 11.9 120 163-297 38-174 (756)
24 smart00433 TOP2c Topoisomerase 98.3 2E-06 4.4E-11 99.4 9.9 115 167-296 6-138 (594)
25 PRK05644 gyrB DNA gyrase subun 98.3 3.6E-06 7.9E-11 98.0 11.9 120 163-296 38-173 (638)
26 TIGR01059 gyrB DNA gyrase, B s 98.3 4.4E-06 9.6E-11 97.7 11.5 120 163-297 31-167 (654)
27 PRK14867 DNA topoisomerase VI 98.2 4.2E-06 9E-11 97.0 10.3 94 163-261 37-140 (659)
28 PF02518 HATPase_c: Histidine 98.2 1E-06 2.2E-11 78.6 3.6 88 163-258 6-98 (111)
29 KOG1977 DNA mismatch repair pr 97.9 9.1E-06 2E-10 92.7 4.5 139 146-295 4-149 (1142)
30 TIGR01058 parE_Gpos DNA topois 97.7 0.00015 3.2E-09 84.7 9.9 117 166-297 38-172 (637)
31 COG0187 GyrB Type IIA topoisom 97.5 0.00023 5.1E-09 81.5 8.4 154 167-345 41-212 (635)
32 PLN03237 DNA topoisomerase 2; 97.4 0.00056 1.2E-08 85.1 10.0 86 163-257 78-179 (1465)
33 COG3290 CitA Signal transducti 97.3 0.00045 9.7E-09 78.1 7.2 84 162-257 427-518 (537)
34 smart00387 HATPase_c Histidine 97.2 0.00063 1.4E-08 58.0 5.9 73 163-243 6-80 (111)
35 PHA02569 39 DNA topoisomerase 97.2 0.00086 1.9E-08 78.0 8.6 116 167-297 50-185 (602)
36 cd00075 HATPase_c Histidine ki 97.2 0.0007 1.5E-08 56.7 5.6 85 165-258 3-93 (103)
37 PRK10604 sensor protein RstB; 97.1 0.0011 2.4E-08 73.3 7.9 89 163-258 320-411 (433)
38 PRK10364 sensor protein ZraS; 97.0 0.0018 3.8E-08 71.8 8.1 82 163-257 349-435 (457)
39 PRK09467 envZ osmolarity senso 96.9 0.0023 4.9E-08 69.9 7.9 86 163-257 332-420 (435)
40 PRK09470 cpxA two-component se 96.9 0.002 4.4E-08 70.5 7.5 88 163-257 354-444 (461)
41 PTZ00109 DNA gyrase subunit b; 96.9 0.0029 6.2E-08 75.8 8.7 117 167-297 134-307 (903)
42 TIGR01386 cztS_silS_copS heavy 96.8 0.0031 6.8E-08 68.7 8.2 87 163-256 354-445 (457)
43 COG0642 BaeS Signal transducti 96.8 0.0021 4.5E-08 65.0 5.9 71 161-242 227-298 (336)
44 PRK10755 sensor protein BasS/P 96.7 0.0027 5.8E-08 67.7 6.6 87 162-259 247-338 (356)
45 TIGR02938 nifL_nitrog nitrogen 96.7 0.0034 7.4E-08 68.5 7.5 85 163-257 388-481 (494)
46 PRK09303 adaptive-response sen 96.7 0.0046 1E-07 67.5 8.5 91 163-259 273-366 (380)
47 PRK11086 sensory histidine kin 96.7 0.0051 1.1E-07 68.8 8.4 82 163-257 434-522 (542)
48 TIGR02966 phoR_proteo phosphat 96.6 0.0069 1.5E-07 62.4 8.5 89 163-258 230-323 (333)
49 PTZ00108 DNA topoisomerase 2-l 96.5 0.0097 2.1E-07 74.6 10.4 122 163-297 58-203 (1388)
50 PRK11006 phoR phosphate regulo 96.5 0.0072 1.6E-07 66.6 8.1 89 162-257 317-410 (430)
51 PLN03128 DNA topoisomerase 2; 96.4 0.0055 1.2E-07 75.7 7.4 122 163-297 53-195 (1135)
52 PRK11100 sensory histidine kin 96.4 0.0072 1.5E-07 66.1 7.2 88 162-257 368-460 (475)
53 PRK15053 dpiB sensor histidine 96.4 0.0055 1.2E-07 69.2 6.5 84 163-256 433-525 (545)
54 PRK10549 signal transduction h 96.3 0.0085 1.8E-07 65.9 7.5 89 163-258 353-446 (466)
55 PRK10815 sensor protein PhoQ; 96.2 0.0089 1.9E-07 67.7 7.2 84 163-257 379-465 (485)
56 TIGR02916 PEP_his_kin putative 96.2 0.0089 1.9E-07 70.3 7.0 83 163-258 580-668 (679)
57 PRK11360 sensory histidine kin 96.2 0.011 2.4E-07 66.0 7.4 83 163-258 501-589 (607)
58 COG4191 Signal transduction hi 95.9 0.012 2.5E-07 67.6 5.8 57 163-225 498-559 (603)
59 PRK10337 sensor protein QseC; 95.8 0.021 4.5E-07 62.8 7.2 83 163-257 353-438 (449)
60 PRK15347 two component system 95.8 0.025 5.3E-07 68.1 8.3 86 163-259 514-603 (921)
61 PRK11091 aerobic respiration c 95.7 0.026 5.6E-07 67.1 7.9 92 163-259 399-494 (779)
62 TIGR01925 spIIAB anti-sigma F 95.6 0.033 7.1E-07 51.7 6.9 81 162-256 39-124 (137)
63 TIGR03785 marine_sort_HK prote 95.5 0.035 7.5E-07 66.0 8.2 89 163-258 598-691 (703)
64 PRK09835 sensor kinase CusS; P 95.5 0.036 7.8E-07 61.2 7.7 87 163-257 376-468 (482)
65 PRK11073 glnL nitrogen regulat 95.4 0.034 7.3E-07 58.9 7.0 89 163-258 238-336 (348)
66 PRK13837 two-component VirA-li 95.3 0.033 7.2E-07 67.1 7.3 90 163-259 561-664 (828)
67 PRK11466 hybrid sensory histid 95.0 0.052 1.1E-06 65.5 7.7 86 163-259 562-651 (914)
68 TIGR02956 TMAO_torS TMAO reduc 94.9 0.061 1.3E-06 65.2 8.0 87 163-259 580-672 (968)
69 KOG0787 Dehydrogenase kinase [ 94.8 0.065 1.4E-06 58.7 6.9 74 163-242 261-349 (414)
70 PRK10490 sensor protein KdpD; 94.8 0.052 1.1E-06 66.2 6.9 87 163-258 779-870 (895)
71 PRK10547 chemotaxis protein Ch 94.6 0.078 1.7E-06 62.8 7.5 87 164-258 387-511 (670)
72 PRK11107 hybrid sensory histid 94.4 0.1 2.2E-06 62.8 7.9 95 163-260 409-508 (919)
73 PRK10841 hybrid sensory kinase 94.2 0.11 2.3E-06 63.8 7.7 89 163-259 563-656 (924)
74 PRK04069 serine-protein kinase 94.1 0.069 1.5E-06 51.8 4.8 52 163-220 43-99 (161)
75 PRK03660 anti-sigma F factor; 94.0 0.17 3.7E-06 47.3 7.1 44 163-212 40-88 (146)
76 TIGR01924 rsbW_low_gc serine-p 93.7 0.14 3E-06 49.7 6.1 85 162-256 42-131 (159)
77 PRK10618 phosphotransfer inter 93.5 0.19 4.1E-06 61.5 8.1 92 163-260 566-662 (894)
78 COG3850 NarQ Signal transducti 93.5 0.11 2.4E-06 59.2 5.6 75 163-260 482-558 (574)
79 PF13581 HATPase_c_2: Histidin 93.4 0.15 3.3E-06 46.4 5.5 77 163-254 32-113 (125)
80 PRK13557 histidine kinase; Pro 93.1 0.25 5.5E-06 55.0 7.8 92 163-259 278-383 (540)
81 COG4585 Signal transduction hi 92.9 0.12 2.6E-06 56.1 4.8 71 162-258 279-353 (365)
82 PRK09959 hybrid sensory histid 92.9 0.26 5.5E-06 61.6 8.1 93 163-259 829-925 (1197)
83 COG2205 KdpD Osmosensitive K+ 91.7 0.56 1.2E-05 56.1 8.4 60 163-226 776-836 (890)
84 COG0643 CheA Chemotaxis protei 91.4 0.45 9.8E-06 56.9 7.4 100 145-260 423-563 (716)
85 COG2972 Predicted signal trans 91.2 0.29 6.3E-06 55.2 5.4 54 162-219 350-407 (456)
86 PRK11644 sensory histidine kin 91.1 0.22 4.7E-06 56.9 4.2 45 163-213 411-456 (495)
87 COG3920 Signal transduction hi 90.7 0.26 5.7E-06 50.6 4.1 44 165-213 125-174 (221)
88 COG5002 VicK Signal transducti 90.6 0.27 5.8E-06 53.8 4.1 71 164-242 344-417 (459)
89 PRK10600 nitrate/nitrite senso 90.5 0.26 5.5E-06 56.7 4.2 45 163-213 470-515 (569)
90 COG2172 RsbW Anti-sigma regula 90.2 0.52 1.1E-05 45.5 5.4 85 161-259 39-129 (146)
91 COG4192 Signal transduction hi 88.0 0.89 1.9E-05 51.3 5.8 60 162-226 564-626 (673)
92 PRK13560 hypothetical protein; 87.9 0.47 1E-05 55.7 4.0 44 165-213 714-762 (807)
93 COG5000 NtrY Signal transducti 87.3 0.71 1.5E-05 53.7 4.7 51 164-220 602-661 (712)
94 COG4564 Signal transduction hi 82.7 2.3 5E-05 46.4 5.7 72 167-261 364-439 (459)
95 PRK10935 nitrate/nitrite senso 80.0 2 4.3E-05 48.8 4.4 46 163-213 472-518 (565)
96 PRK13559 hypothetical protein; 79.7 1.7 3.8E-05 46.3 3.7 47 163-213 268-319 (361)
97 COG4251 Bacteriophytochrome (l 79.6 2.7 6E-05 49.2 5.3 52 163-220 637-691 (750)
98 smart00249 PHD PHD zinc finger 79.3 1.4 3.1E-05 32.6 2.1 33 550-582 10-45 (47)
99 COG3852 NtrB Signal transducti 69.1 8.1 0.00018 42.0 5.3 58 163-220 242-309 (363)
100 COG3851 UhpB Signal transducti 65.8 7.1 0.00015 43.3 4.1 44 163-212 411-455 (497)
101 PF00628 PHD: PHD-finger; Int 51.5 2.2 4.8E-05 33.1 -2.0 34 549-582 9-46 (51)
102 KOG0355 DNA topoisomerase type 50.2 38 0.00082 41.2 6.9 45 163-215 54-102 (842)
103 COG3275 LytS Putative regulato 48.2 23 0.00049 40.7 4.5 42 166-213 460-507 (557)
104 PF14501 HATPase_c_5: GHKL dom 35.2 65 0.0014 28.3 4.6 41 163-209 6-51 (100)
105 COG2865 Predicted transcriptio 27.0 70 0.0015 36.8 4.1 68 161-242 269-351 (467)
106 PF05180 zf-DNL: DNL zinc fing 20.3 34 0.00073 29.1 -0.0 23 548-570 23-45 (66)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.2e-28 Score=279.28 Aligned_cols=371 Identities=23% Similarity=0.287 Sum_probs=271.3
Q ss_pred CCCceeeecCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhccccc---CCCccEEEEEecccccCCCCCCEEEEE-
Q 006073 129 PEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII- 204 (662)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~v~p~~L~slsts~~~~~f~AIaELIdNA~DA---~At~V~I~I~~~~~~~~~~~~~~L~I~- 204 (662)
.+++-+.+...+.-.++.++|+|||+++++| .|.++|++||+|||+|. +|+.+.|.-. . ...+.....++|.
T Consensus 114 ~a~~~~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd~I--~-p~~d~~i~a~~v~~ 189 (775)
T KOG1845|consen 114 LAELDVIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVDYI--N-PVMDIFIRALVVQL 189 (775)
T ss_pred cccccceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEeeee--c-ccccccceeEEeec
Confidence 3444445555555689999999999999999 79999999999999997 5666554322 1 1112223445555
Q ss_pred ----eCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCceeeeeccccCCeEEEEEeeC------CCCceeEEEeeec--
Q 006073 205 ----DDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQSLN-- 272 (662)
Q Consensus 205 ----DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~------g~~s~~~ls~sf~-- 272 (662)
|||+||.++-+..+|.+|++.+. +-...+|+||+||+++.|++|.+++|++|.. .++++|+++++|.
T Consensus 190 ~~~s~~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~ 268 (775)
T KOG1845|consen 190 KRISDDGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRK 268 (775)
T ss_pred cceeccccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeecc
Confidence 78999999999999999998875 3367899999999999999999999999943 3578999999994
Q ss_pred CCCccEEEcC----cccCCC---CcEEEEEecccchhhhhhhhhh-----hhhcCCCchh--hHHHhh-------cc---
Q 006073 273 QGKDNLEIPI----VSYYRK---GQFMELDTVVQSEATAKYNLKS-----IKEFSPFNKY--LIGEKA-------GL--- 328 (662)
Q Consensus 273 ~g~~~i~VP~----~~~~~~---Gt~I~l~~~~~~e~~~~~~L~~-----I~kySpF~s~--~I~e~~-------~~--- 328 (662)
++.++++||+ ..++.. -..|.. +. ...|..++.. +++|+||.+. .+.+.. ..
T Consensus 269 t~~~d~iv~~~~i~~~~e~~~~~~~~i~~--~s--~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~ 344 (775)
T KOG1845|consen 269 TGKRDFIVPMRLIKMDYEKSDQLWQGILY--KS--GVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGH 344 (775)
T ss_pred ccCCceeEecchhhhhhhcccccccceee--cc--ccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcc
Confidence 5788999999 444321 112222 11 1223444444 9999999984 222200 01
Q ss_pred -cc-CCCCCcEEEEEeccCCC---CceeeeccCCCCCCCCCCcCCeeeecccccCCCCcccccCcchhhHHHHHhhhhcC
Q 006073 329 -FQ-DKCTGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLV 403 (662)
Q Consensus 329 -~~-~~~~GT~IiI~NL~r~~---~~~eLdF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL~ 403 (662)
+. ...+||.+|+||+++|. +-.+++|+.+ +++|. -...++++.|.++||+.
T Consensus 345 ~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~~~ 400 (775)
T KOG1845|consen 345 QFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILLLT 400 (775)
T ss_pred hhhhccCCCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccchh
Confidence 11 24799999999997774 3488889765 24442 02456889999999974
Q ss_pred --CCeEEEEcCeEeccchhhccccccee--ecccccc-------eEEEEEEccccccc-ccccceEEEEEeCeeee----
Q 006073 404 --PRMKIYVQGSLVRSRPLAKSLNKTCV--ETGIIMG-------KSAHLTLGRCQLEW-EQMNCGIFLYWHGRLIE---- 467 (662)
Q Consensus 404 --Prm~I~LnG~kV~~~~i~~~L~~~~v--~~~~~~~-------~~V~it~G~~~~e~-~~~~~Gi~vY~nnRLI~---- 467 (662)
++|.+.+.|+.+.++.+......+.. +.+.... .......|+.+... +...+|+.|||.+|||.
T Consensus 401 ~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~ 480 (775)
T KOG1845|consen 401 RRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCR 480 (775)
T ss_pred ccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhccc
Confidence 79999999999999998876655432 1111100 11222455555432 23456999999999999
Q ss_pred eeeeccccccCCCCCceEEEEEecCcccccCCCccccccCccCccCchHHHHHHHHHHHHHHHHHhhcccccccc
Q 006073 468 AYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVV 542 (662)
Q Consensus 468 ~~~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~~~eYW~~~~~~~~~~ 542 (662)
++||.++. ....++++++|+..+ +. +++|++|+|+++-.-.+++.+..++++.||...|+.+++.
T Consensus 481 ~~~k~~n~--~~s~~~~~~~il~~n-~~-------~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~ 545 (775)
T KOG1845|consen 481 PFVKIDNA--TGSLGQAVIPILVGN-FV-------ETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEA 545 (775)
T ss_pred ceeeecCC--Cccccccccceeccc-cc-------ccCCCccccccccccccchhhhhhcccccccccccccCcc
Confidence 99999985 557999999999997 43 3699999999999889999999999999999999988765
No 2
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.3e-22 Score=223.49 Aligned_cols=170 Identities=25% Similarity=0.329 Sum_probs=134.1
Q ss_pred eeecCHHH-HHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCCCEEEEEeC
Q 006073 144 FVRADPSY-LQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDD 206 (662)
Q Consensus 144 ~~~v~p~~-L~slsts~~~~~f~AIaELIdNA~DA~----------------At~V~I~I~~~~~~~~~~~~~~L~I~DN 206 (662)
.|+++-+- |+.+..+.|+...-.|+|||+||.||. ...+.|.|.. ++...+|+|.||
T Consensus 8 ~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~------Dk~~kTLtI~DN 81 (623)
T COG0326 8 GFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISF------DKDNKTLTISDN 81 (623)
T ss_pred hhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEE------cccCCEEEEEeC
Confidence 45555543 455567777777777999999999992 2356666653 355789999999
Q ss_pred CCCCCHHHHHHHhh-cccCCC--------CC-CCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCc
Q 006073 207 GHGMTHQDVVRMTY-FGHKQP--------DA-DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD 276 (662)
Q Consensus 207 G~GMt~eel~~~l~-fG~s~k--------~~-~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~ 276 (662)
|+|||++|+.+.++ ++.|.. .. ++...|||||||||||+| ++++|+|.||+.+..... .|.+ .|.+
T Consensus 82 GIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~~~~-~W~S--~g~g 157 (623)
T COG0326 82 GIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGEDEAY-HWES--DGEG 157 (623)
T ss_pred CCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCCcce-EEEE--cCCC
Confidence 99999999999875 333321 11 357889999999999999 999999999999975444 6766 6788
Q ss_pred cEEEcCcccCC-CCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073 277 NLEIPIVSYYR-KGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 323 (662)
Q Consensus 277 ~i~VP~~~~~~-~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~ 323 (662)
+|+|....-+. +||.|+|+++++. +++.+|.|+. |++||.|..+||.
T Consensus 158 ~ytv~~~~~~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~ 207 (623)
T COG0326 158 EYTVEDIDKEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIY 207 (623)
T ss_pred ceEEeeccCCCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceE
Confidence 99998877777 4999999998754 7889999975 8999999999986
No 3
>PRK05218 heat shock protein 90; Provisional
Probab=99.86 E-value=1.6e-20 Score=215.21 Aligned_cols=306 Identities=20% Similarity=0.218 Sum_probs=193.2
Q ss_pred eeeecCHH-HHHHhhcccccCHHHHHHHHHhccccc----------------CCCccEEEEEecccccCCCCCCEEEEEe
Q 006073 143 NFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDA----------------KATKLEISIESIYFKKAGKDIPMLSIID 205 (662)
Q Consensus 143 ~~~~v~p~-~L~slsts~~~~~f~AIaELIdNA~DA----------------~At~V~I~I~~~~~~~~~~~~~~L~I~D 205 (662)
..|+++-+ .|..++.+.|+.+..+|+|||+||+|| ++....|.|.. +.+...|.|.|
T Consensus 6 ~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~------d~~~~~i~I~D 79 (613)
T PRK05218 6 GEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISF------DKEARTLTISD 79 (613)
T ss_pred eehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEE------cCCCCeEEEEE
Confidence 34455544 557778888999999999999999999 34455666542 23345799999
Q ss_pred CCCCCCHHHHHHHh-hcccCCCC----------CCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCC
Q 006073 206 DGHGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG 274 (662)
Q Consensus 206 NG~GMt~eel~~~l-~fG~s~k~----------~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g 274 (662)
||+||+.+++...+ .+|.|.+. ..+...||+||+||+++ |.++++++|.||+.+....++.|.+ ++
T Consensus 80 nG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~-f~va~~v~V~Sr~~~~~~~~~~w~~--~g 156 (613)
T PRK05218 80 NGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSA-FMVADKVTVITRSAGPAAEAVRWES--DG 156 (613)
T ss_pred CCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhh-hhccCEEEEEEcCCCCCCceEEEEE--eC
Confidence 99999999999865 46665321 12467899999999875 4599999999999774456788866 45
Q ss_pred CccEEEcCcccCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHHHhhccccCCCCCcEEEEEeccCCCCceee
Q 006073 275 KDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCL 352 (662)
Q Consensus 275 ~~~i~VP~~~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~NL~r~~~~~eL 352 (662)
...+.+-..+-..+||+|+++++.+. ++...+.++. |.+||.|..+||.. .. +. | +.-+....
T Consensus 157 ~~~~~i~~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~-----~~----~~---~---~~in~~~~ 221 (613)
T PRK05218 157 EGEYTIEEIEKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKL-----EK----EE---E---ETINSASA 221 (613)
T ss_pred CceeEEeECCCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEE-----ec----cc---c---eeecCCcc
Confidence 55666654443468999999998764 5666777765 89999998877742 10 00 0 00000111
Q ss_pred eccCCCCCCCCCCcCCeeeecccccCCCCcccccCcchhhHHHHHhhhh---cCCCeEEEEcCeEeccchhhccccccee
Q 006073 353 EWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIF---LVPRMKIYVQGSLVRSRPLAKSLNKTCV 429 (662)
Q Consensus 353 dF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLY---L~Prm~I~LnG~kV~~~~i~~~L~~~~v 429 (662)
-|..+ ..|+. +.-...|..-++ -+|-+.|.++..-
T Consensus 222 ~w~~~--------~~~i~-------------------~~~~~~fy~~~~~~~~~pl~~i~~~~e~--------------- 259 (613)
T PRK05218 222 LWTRS--------KSEIT-------------------DEEYKEFYKHLAHDFDDPLFWIHNNVEG--------------- 259 (613)
T ss_pred ceecC--------Ccccc-------------------HHHHHHHhhhhcccccCCcEEEEcccCC---------------
Confidence 11111 01211 011113322222 2344444432111
Q ss_pred ecccccceEEEEEEcccccc----c-ccccceEEEEEeCeeeeee-eeccccccCCCCCceEEEEEecCcccccCCCccc
Q 006073 430 ETGIIMGKSAHLTLGRCQLE----W-EQMNCGIFLYWHGRLIEAY-KRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVW 503 (662)
Q Consensus 430 ~~~~~~~~~V~it~G~~~~e----~-~~~~~Gi~vY~nnRLI~~~-~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~ 503 (662)
...++-.+++.... . .....|+.+|.|+|+|.-. ..+-|. +-+=|-|||+.+.| |
T Consensus 260 ------~~~~~gll~iP~~~~~~~~~~~~~~~~~lyvn~v~I~d~~~~lLP~-----wl~Fv~GVVDs~dL--p------ 320 (613)
T PRK05218 260 ------PFEYTGLLYIPKKAPFDLFNRDRKGGLKLYVKRVFIMDDAEELLPE-----YLRFVKGVIDSEDL--P------ 320 (613)
T ss_pred ------ceEEEEEEEeCCCCccchhhhcccccEEEEECcEEeeCchhhhchH-----HHhheEEEeecCCC--C------
Confidence 01111122221100 0 1245899999999999744 335554 45677889999876 2
Q ss_pred cccCccCccCchHHHHHHHHHHHHHHHHHh
Q 006073 504 VHNNKQGFLDCEPYARLEEWLGKVADEYWD 533 (662)
Q Consensus 504 pthnKQdFe~t~~y~~L~~~L~e~~~eYW~ 533 (662)
|+-+...+..+..++++.+.|.+++.++..
T Consensus 321 lnvSRE~lq~~~~l~~i~~~l~~kv~~~l~ 350 (613)
T PRK05218 321 LNVSREILQEDRVVKKIRKAITKKVLDELE 350 (613)
T ss_pred CccCHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 367777889999899988888887766553
No 4
>PTZ00130 heat shock protein 90; Provisional
Probab=99.85 E-value=3e-21 Score=223.17 Aligned_cols=197 Identities=23% Similarity=0.328 Sum_probs=148.3
Q ss_pred CcccccCCCCCccccccCCCCCceeeecCCCCceeeecCHH-HHHHhhcccccCHHHHHHHHHhcccccCC---------
Q 006073 110 SPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAKA--------- 179 (662)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~p~-~L~slsts~~~~~f~AIaELIdNA~DA~A--------- 179 (662)
.|.|--|.-|-+.|++....- .......|+..-+ +|+.+..+.|+.+..+|+|||+||+||.+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-------~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~ 114 (814)
T PTZ00130 42 KEEVKKDRDNIPEIEDGEKPT-------SGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSD 114 (814)
T ss_pred cchhhcccccCcccccCCCCC-------cccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCC
Confidence 356666777777676655421 1223345666554 55666888888898999999999999964
Q ss_pred -------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCC---------CCCCCcccccCceee
Q 006073 180 -------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPD---------ADDPNRIGRFGVGFK 242 (662)
Q Consensus 180 -------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~---------~~~~~~IG~fGiGfK 242 (662)
+.+.|.|.. +.....|+|.|||+|||++++.+.++ +++|... ..+...||||||||+
T Consensus 115 ~~~~~~~~~~~I~I~~------D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFY 188 (814)
T PTZ00130 115 ESVLGEEKKLEIRISA------NKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFY 188 (814)
T ss_pred chhcCCCCCceEEEEE------CCCCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchh
Confidence 466777763 34567999999999999999988764 5554311 224679999999999
Q ss_pred eeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcCccc---CCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCC
Q 006073 243 TGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY---YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPF 317 (662)
Q Consensus 243 sA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~~---~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF 317 (662)
|++| ++++|.|.||+.+. .++.|.+ .+...|.|-..+- ..+||+|+|+++++. ++...+.++. |.+||.|
T Consensus 189 SaFm-VAdkV~V~Trs~~~--~~~~W~s--~g~g~y~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~f 263 (814)
T PTZ00130 189 SAFL-VADKVIVYTKNNND--EQYIWES--TADAKFTIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQF 263 (814)
T ss_pred heee-ecCEEEEEEcCCCC--ceEEEEE--CCCCcEEEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhcc
Confidence 9988 99999999998773 4678877 5666777755432 368999999999765 6888899875 8999999
Q ss_pred chhhHHH
Q 006073 318 NKYLIGE 324 (662)
Q Consensus 318 ~s~~I~e 324 (662)
..+||+.
T Consensus 264 I~~PI~l 270 (814)
T PTZ00130 264 IQYPIYL 270 (814)
T ss_pred CCCCEEE
Confidence 9999963
No 5
>PRK14083 HSP90 family protein; Provisional
Probab=99.84 E-value=8.6e-20 Score=208.16 Aligned_cols=302 Identities=15% Similarity=0.178 Sum_probs=195.2
Q ss_pred eecCHH-HHHHhhcccccCHHHHHHHHHhcccccCCC----------ccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 006073 145 VRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 213 (662)
Q Consensus 145 ~~v~p~-~L~slsts~~~~~f~AIaELIdNA~DA~At----------~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 213 (662)
|+++.+ .|+.++.+.|+++..+|+|||+||+||++. .|.|.+. +.+...|+|.|||.||+.+
T Consensus 5 Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-------d~~~~~l~I~DnGiGmt~e 77 (601)
T PRK14083 5 FQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELT-------DAGGGTLIVEDNGIGLTEE 77 (601)
T ss_pred chHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-------cCCCcEEEEEeCCCCCCHH
Confidence 444444 557778888899999999999999999764 4555541 1346799999999999999
Q ss_pred HHHHHh-hcccCCCCCC-----CCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcCc--cc
Q 006073 214 DVVRMT-YFGHKQPDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV--SY 285 (662)
Q Consensus 214 el~~~l-~fG~s~k~~~-----~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~--~~ 285 (662)
++.+.+ .+|.|.+... +...||+|||||++++| +|+++.|.||+.+. ..++.|.+. +...+.|... .-
T Consensus 78 el~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~-vad~v~V~Tr~~~~-~~~~~W~~~--~~g~y~i~~~~~~~ 153 (601)
T PRK14083 78 EVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL-VADEIVVVSRSAKD-GPAVEWRGK--ADGTYSVRKLETER 153 (601)
T ss_pred HHHHHHhhhccchhhhhhhcccccccccccccceEEEEE-ecCEEEEEeccCCC-CceEEEEEC--CCCceEEEeCCCCC
Confidence 999864 6887766431 35689999999987766 99999999999752 567888774 3445666542 33
Q ss_pred CCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHHHhhccccCCCCCcEEEEEeccCCCCceeeeccCCCCCCCC
Q 006073 286 YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSS 363 (662)
Q Consensus 286 ~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~NL~r~~~~~eLdF~~d~~~~~~ 363 (662)
..+||+|+|+++++. ++..++.++. |.+||.|..+||... |+...| .. ...-|..+
T Consensus 154 ~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~---------~~~~~i---N~----~~~lW~~~------ 211 (601)
T PRK14083 154 AEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVE---------GEKGGV---NE----TPPPWTRD------ 211 (601)
T ss_pred CCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccC---------Cceeee---cC----CCCCccCC------
Confidence 458999999998654 5666677764 889999999988521 211111 00 01112111
Q ss_pred CCcCCeeeecccccCCCCcccccCcchhhHHHHHhhhhc-CCCeEEEEcCeEeccchhhcccccceeecccccceEEEEE
Q 006073 364 FHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFL-VPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLT 442 (662)
Q Consensus 364 ~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL-~Prm~I~LnG~kV~~~~i~~~L~~~~v~~~~~~~~~V~it 442 (662)
..+|. ..+.-..+|..-+|= +|-+.|.++-.- ... ..+-..
T Consensus 212 --~~eit-----------------~~~eey~~Fyk~~~~~~Pl~~ih~~~e~---~~~----------------~~~Ly~ 253 (601)
T PRK14083 212 --YPDPE-----------------TRREALLAYGEELLGFTPLDVIPLDVPS---GGL----------------EGVAYV 253 (601)
T ss_pred --ccccC-----------------ccHHHHHHHHHHhcCCCchheeeecccc---hhh----------------eEEEEe
Confidence 11210 011123355555553 465555554221 000 111112
Q ss_pred EcccccccccccceEEEEEeCeeeeee-eeccccccCCCCCceEEEEEecCcccccCCCccccccCccCccCchHHHHHH
Q 006073 443 LGRCQLEWEQMNCGIFLYWHGRLIEAY-KRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLE 521 (662)
Q Consensus 443 ~G~~~~e~~~~~~Gi~vY~nnRLI~~~-~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~ 521 (662)
++-.... ....|+-+|+|+=||..- .-+-|. .-+=|=|||+.+.| | ++-+...+.+...++++.
T Consensus 254 iP~~~~~--~~~~~v~LY~~rVfI~d~~~~lLP~-----wl~FvrGVVDS~DL--p------LNvSRE~LQ~~~~l~~ir 318 (601)
T PRK14083 254 LPYAVSP--AARRKHRVYLKRMLLSEEAENLLPD-----WAFFVRCVVNTDEL--R------PTASREALYEDDALAAVR 318 (601)
T ss_pred cCCCCCc--cccCceEEEeeeeEeecchhhhhHH-----HHHHheeeeecCCC--C------CccCHHHHccCHHHHHHH
Confidence 2221111 134699999999999643 335553 44667799999876 2 367777788888889999
Q ss_pred HHHHHHHHHHH
Q 006073 522 EWLGKVADEYW 532 (662)
Q Consensus 522 ~~L~e~~~eYW 532 (662)
+.+.+++.++.
T Consensus 319 ~~i~kki~~~L 329 (601)
T PRK14083 319 EELGEAIRKWL 329 (601)
T ss_pred HHHHHHHHHHH
Confidence 88888876554
No 6
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=6.3e-22 Score=226.72 Aligned_cols=336 Identities=21% Similarity=0.279 Sum_probs=242.9
Q ss_pred EEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecC--CCcc
Q 006073 200 MLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ--GKDN 277 (662)
Q Consensus 200 ~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~--g~~~ 277 (662)
+|++.|||.||+++++..+..|+. ....+|+||+|+|+++|++|+++.++|+.....++++++++|++ ....
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~------~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sqt~~e~~~~~~ 74 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV------GLYGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQTFHESEADDA 74 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc------cccccccccCcccccccccCcccceeeccccccceeeeeccccccccccc
Confidence 478999999999999999988833 46789999999999999999999999999999999999999964 5678
Q ss_pred EEEcCcccCCCCcEEEEEecccchhhhhhhhhhhhhcCCCchh--hHHHhhccccCCCCCcEEEEEeccCC-CCceeeec
Q 006073 278 LEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKY--LIGEKAGLFQDKCTGTQIYIWNLDQW-GSNYCLEW 354 (662)
Q Consensus 278 i~VP~~~~~~~Gt~I~l~~~~~~e~~~~~~L~~I~kySpF~s~--~I~e~~~~~~~~~~GT~IiI~NL~r~-~~~~eLdF 354 (662)
+++|+++|+.++..+.. .....++++|..||+|.+. .+.+.. .+.....||.+||.|+++. .+.++++|
T Consensus 75 vvvP~~t~~~~~~~~~~-------~k~~~~l~~~~c~sfwKag~~~~a~~~-~~~~~~G~~~~iivhpkflhsnatshk~ 146 (775)
T KOG1845|consen 75 VVVPCPTFNPRTREIVT-------EKFAFSLEAIYCRSFWKAGDYLLAELD-VIIGKSGGTLHIIVHPKFLHSNATSHKW 146 (775)
T ss_pred ceecccccccccccccc-------cccccccchhhhcCcccccchhccccc-ceeccCCceeEEEEehhhhcCCCccccc
Confidence 89999999998876543 1234578899999999873 222221 2222234588888888876 46788899
Q ss_pred cCCCCCCCCCCcCCeeeecccccCCCCcccccCcchhhHHHHHhhhhcCCCeEEEEcCeEeccchhhcccc--cceeecc
Q 006073 355 DNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLN--KTCVETG 432 (662)
Q Consensus 355 ~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL~Prm~I~LnG~kV~~~~i~~~L~--~~~v~~~ 432 (662)
..| ..||+++.+- ++++-.. .|+.++|+.|+|.|++++..|+.+.+..+-. .+++.+.
T Consensus 147 a~~--------a~aeLldnal---------DEi~~~~---tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~ 206 (775)
T KOG1845|consen 147 AKG--------AIAELLDNAL---------DEITNGA---TFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRK 206 (775)
T ss_pred ccC--------hhhhhccccc---------ccccccc---ceEEeeeecccccccceeEEeeccceeccccccCHHHHHH
Confidence 776 4788876531 2233223 4599999999999999999999876443321 1111110
Q ss_pred ----------cccceEEEEEEcccccccccccceEEEEEeCeeeeeeeeccccccCCCCCceEEEEEecCcccccCCCcc
Q 006073 433 ----------IIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLV 502 (662)
Q Consensus 433 ----------~~~~~~V~it~G~~~~e~~~~~~Gi~vY~nnRLI~~~~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~ 502 (662)
+...+..+...||.... ...|..+|+-+|. +..++.++.+.||++..+||..
T Consensus 207 ~m~l~~~~k~e~~~tv~q~~~gfktst---~rlGa~~i~~~R~---------~~~~~~kstqsiglls~tfL~~------ 268 (775)
T KOG1845|consen 207 CMSLGYSSKKEANSTVGQYGNGFKTST---MRLGADAIVFSRC---------ESRRGLKSTQSIGLLSYTFLRK------ 268 (775)
T ss_pred HHHhhhhhhhhhhhhhhhhccccccch---hhhccceeEeehh---------hhhccCCcceeEEEEEEeeecc------
Confidence 11112334455666532 2389999999987 3335567899999999997754
Q ss_pred ccccCccCccCchHHHHHHHHHHHHHHHHHhhccccccccc--cCCCCCCCCceecccchhhhhcCCCCCCCCCCCCcee
Q 006073 503 WVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVK--DGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWF 580 (662)
Q Consensus 503 ~pthnKQdFe~t~~y~~L~~~L~e~~~eYW~~~~~~~~~~~--~~~~~~~~~~WvQCd~C~KWR~Lp~~~~~~~lp~~W~ 580 (662)
|+ |+||..+- +|++...+...++|.. +-|.+ +.....+.... + .|+||+..+...+ .++..|+
T Consensus 269 --t~-~~d~iv~~---~~i~~~~e~~~~~~~~----i~~~s~~~~~~n~~i~~~-~--~~L~w~p~~~~~~--~l~q~~v 333 (775)
T KOG1845|consen 269 --TG-KRDFIVPM---RLIKMDYEKSDQLWQG----ILYKSGVDWAVNLEIEVT-E--RFLKWSPYSHLLD--LLGQNSV 333 (775)
T ss_pred --cc-CCceeEec---chhhhhhhcccccccc----eeeccccccceeeeeHHH-H--HHhhcCccccHHH--Hhhhhhh
Confidence 78 99999877 8888888888888865 22221 11111221111 1 7999999999876 5889999
Q ss_pred eccCCC--CCCCCCCccccccCcc
Q 006073 581 CYMKPF--EGLCDLPEQKVDAGVV 602 (662)
Q Consensus 581 C~~n~~--~~~C~~pEe~~~~~~~ 602 (662)
|..++. +..|.++..+....++
T Consensus 334 ~~~~~~~ef~~~~~~~~~~g~~~I 357 (775)
T KOG1845|consen 334 QYSKDFPEFGHQFNIMNKPGTDVI 357 (775)
T ss_pred hhccccchhcchhhhccCCCceee
Confidence 999986 4889999887776644
No 7
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.84 E-value=8.3e-20 Score=210.61 Aligned_cols=169 Identities=23% Similarity=0.302 Sum_probs=129.1
Q ss_pred eecCHH-HHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEeCC
Q 006073 145 VRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 207 (662)
Q Consensus 145 ~~v~p~-~L~slsts~~~~~f~AIaELIdNA~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG 207 (662)
|+..-+ .|+.+..+.|+....+|+|||+||.||.. ..+.|.|.. +.+...|+|.|||
T Consensus 7 Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~L~I~DnG 80 (701)
T PTZ00272 7 FQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVP------DKENKTLTVEDNG 80 (701)
T ss_pred cHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEE------cCCCCEEEEEECC
Confidence 444333 45666778888888889999999999942 245666653 3345789999999
Q ss_pred CCCCHHHHHHHhh-cccCCC--------CCCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccE
Q 006073 208 HGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 278 (662)
Q Consensus 208 ~GMt~eel~~~l~-fG~s~k--------~~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i 278 (662)
+||+.+|+.+.++ ++.|.. ...+...||+|||||++++| +|++|.|.||+.+. .++.|.+ .+...|
T Consensus 81 iGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~~--~~~~W~s--~~~g~y 155 (701)
T PTZ00272 81 IGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNSD--ESYVWES--SAGGTF 155 (701)
T ss_pred CCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCCC--ceEEEEE--CCCCcE
Confidence 9999999988764 555422 12346799999999998888 99999999998764 5888887 556677
Q ss_pred EEcCcc-c-CCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHHH
Q 006073 279 EIPIVS-Y-YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 324 (662)
Q Consensus 279 ~VP~~~-~-~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~e 324 (662)
+|...+ . ..+||+|+|+++++. ++...+.++. |.+||.|..+||+.
T Consensus 156 ~i~~~~~~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l 205 (701)
T PTZ00272 156 TITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIEL 205 (701)
T ss_pred EEEeCCCCCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEE
Confidence 774432 2 268999999999765 6788888875 89999999999963
No 8
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.8e-17 Score=182.24 Aligned_cols=151 Identities=29% Similarity=0.389 Sum_probs=121.4
Q ss_pred HHHHHHHHhcccccC--------------CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cc------
Q 006073 164 FGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FG------ 222 (662)
Q Consensus 164 f~AIaELIdNA~DA~--------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG------ 222 (662)
...++|||.||.||. ...+.|.|.. +.....|+|.|.|+|||++||.++++ +.
T Consensus 59 EvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~------nk~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~ 132 (656)
T KOG0019|consen 59 EVFLRELISNASDALEKLRYLELKGDEKALPELEIRIIT------NKDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKA 132 (656)
T ss_pred HHHHHhhhccccchHHHHHHHhhcCccccccceeEEecc------CCCcceEEEEecCCCcCHHHHHhhhhhhhhcccHH
Confidence 344999999999993 2456677653 45678999999999999999999876 22
Q ss_pred --cCCC-CCCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcCcccCCCCcEEEEEecc-
Q 006073 223 --HKQP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVV- 298 (662)
Q Consensus 223 --~s~k-~~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~~~~~Gt~I~l~~~~- 298 (662)
...+ ..++.+.|||||+|||+|++ ++++|.|+||+.+.. ++.|.+ .+...++|...+-..+||.|+++++.
T Consensus 133 Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e--~y~Wes--~~~gs~~v~~~~~~~rGTki~l~lKe~ 207 (656)
T KOG0019|consen 133 FLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE--GLQWTS--NGRGSYEIAEASGLRTGTKIVIHLKEG 207 (656)
T ss_pred HHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc--ceeeec--CCCCceEEeeccCccccceEEeeehhh
Confidence 2233 34567899999999999988 999999999998875 777766 56667777766567799999999997
Q ss_pred cchhhhhhhhhh-hhhcCCCchhhHHHh
Q 006073 299 QSEATAKYNLKS-IKEFSPFNKYLIGEK 325 (662)
Q Consensus 299 ~~e~~~~~~L~~-I~kySpF~s~~I~e~ 325 (662)
+.++..+..++. ++|||-|.++||+..
T Consensus 208 ~~ey~ee~rikeiVKK~S~Fv~yPI~l~ 235 (656)
T KOG0019|consen 208 DCEFLEEKRIKEVVKKYSNFVSYPIYLN 235 (656)
T ss_pred hhhhccHhHHHHHHhhccccccccchhh
Confidence 458888888875 999999999999743
No 9
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2e-17 Score=178.68 Aligned_cols=159 Identities=25% Similarity=0.407 Sum_probs=119.0
Q ss_pred HHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH
Q 006073 151 YLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 214 (662)
Q Consensus 151 ~L~slsts~~~~~f~AIaELIdNA~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 214 (662)
+|++|.+.. .+| ++|||.||.||-. ..++|.|.. +.....|.|.|.|.||++++
T Consensus 88 IINSLY~NK--eIF--LRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~------Dke~klLhi~DtGiGMT~ed 157 (785)
T KOG0020|consen 88 IINSLYRNK--EIF--LRELISNASDALDKIRLLALTDKDVLGETEELEIKIKA------DKEKKLLHITDTGIGMTRED 157 (785)
T ss_pred HHHHHhhhh--HHH--HHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEee------chhhCeeeEecccCCccHHH
Confidence 345554333 366 9999999999932 456666654 45678999999999999999
Q ss_pred HHHHhh-cccCC--------CCCC-----CCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEE
Q 006073 215 VVRMTY-FGHKQ--------PDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI 280 (662)
Q Consensus 215 l~~~l~-fG~s~--------k~~~-----~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~V 280 (662)
|.++++ +..|. .... ....|||||+|||+|++ +++.|.|+||+++. -.++|.+ ....+.|
T Consensus 158 Li~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD--~QyiWES---dan~Fsv 231 (785)
T KOG0020|consen 158 LIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDD--SQYIWES---DANSFSV 231 (785)
T ss_pred HHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCc--cceeeec---cCcceee
Confidence 999876 22221 1111 13689999999999988 99999999999886 3466765 2337777
Q ss_pred cCcccC---CCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHHHh
Q 006073 281 PIVSYY---RKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK 325 (662)
Q Consensus 281 P~~~~~---~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~e~ 325 (662)
...+|. .+||.|+|+++++. +++++..++. |.+||.|+.+||..+
T Consensus 232 seDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lW 281 (785)
T KOG0020|consen 232 SEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLW 281 (785)
T ss_pred ecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeee
Confidence 665554 58999999999764 6788888875 999999999988644
No 10
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.69 E-value=6e-18 Score=159.20 Aligned_cols=97 Identities=34% Similarity=0.511 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCC-CCCCcccccCcee
Q 006073 163 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA-DDPNRIGRFGVGF 241 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~-~~~~~IG~fGiGf 241 (662)
+..||+|||+||+||+|++|.|.|... ..+...|.|.|||.||+.++|..++.+|.+.+.. .+...+|+||+|+
T Consensus 3 ~~~al~ElI~Ns~DA~a~~I~I~i~~~-----~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 3 PEDALRELIDNSIDAGATNIKISIDED-----KKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGL 77 (137)
T ss_dssp CTHHHHHHHHHHHHHHHHHEEEEEEEE-----TTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGC
T ss_pred HHHHHHHHHHHHHHccCCEEEEEEEcC-----CCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEH
Confidence 368999999999999999999999852 1356899999999999999999999998887641 1367899999999
Q ss_pred eeeccccCCeEEEEEeeCCCCce
Q 006073 242 KTGAMRLGKDALVLTQTADSRSI 264 (662)
Q Consensus 242 KsA~~~lg~~v~V~Sk~~g~~s~ 264 (662)
|.|++++|+.+.|+|++.+....
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~~~ 100 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGESFT 100 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSSSE
T ss_pred HHHHHHhcCEEEEEEEECCCCcE
Confidence 99999999999999999987553
No 11
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=99.60 E-value=1.4e-16 Score=125.79 Aligned_cols=45 Identities=44% Similarity=1.030 Sum_probs=31.3
Q ss_pred CceecccchhhhhcCCCCCCC--CCCCCceeeccCCCC--CCCCCCccc
Q 006073 552 QEWVQCNKCRKWRMLDPGFDT--KSLPVEWFCYMKPFE--GLCDLPEQK 596 (662)
Q Consensus 552 ~~WvQCd~C~KWR~Lp~~~~~--~~lp~~W~C~~n~~~--~~C~~pEe~ 596 (662)
+.|||||.|+|||+||.+++. ..+|+.|+|+||+|. ++|++|||.
T Consensus 1 ~~WVQCd~C~KWR~lp~~~~~~~~~~~d~W~C~~n~~~~~~sC~~pee~ 49 (50)
T PF07496_consen 1 DYWVQCDSCLKWRRLPEEVDPIREELPDPWYCSMNPDPPFNSCDAPEEI 49 (50)
T ss_dssp -EEEE-TTT--EEEE-CCHHCTSCCSSTT--GGGSS-CCC-STTS--SS
T ss_pred CeEEECCCCCceeeCChhhCcccccCCCeEEcCCCCCCCCCCCCCcccC
Confidence 379999999999999999877 789999999999974 999999985
No 12
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.48 E-value=1.4e-12 Score=150.48 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=85.6
Q ss_pred ceeeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh
Q 006073 142 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 220 (662)
Q Consensus 142 ~~~~~v~p~~L~sl-sts~~~~~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~ 220 (662)
|.+-.+++..++.+ +...+..|.++|+|||+||+||||+.|.|.+.. .+...|.|.|||.||+.+++..++.
T Consensus 1 ~~I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~~-------~g~~~i~V~DnG~Gi~~~~~~~~~~ 73 (617)
T PRK00095 1 MPIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEE-------GGLKLIRVRDNGCGISKEDLALALA 73 (617)
T ss_pred CCceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEEe-------CCeEEEEEEEcCCCCCHHHHHHHhh
Confidence 45778999999999 556668999999999999999999999999962 4557899999999999999998876
Q ss_pred cccCCCCC--CC---CCcccccCceeeeeccccCCeEEEEEeeCCC
Q 006073 221 FGHKQPDA--DD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADS 261 (662)
Q Consensus 221 fG~s~k~~--~~---~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~ 261 (662)
...++|-. ++ ....|..|.|+.+.+ .+ ..++|.||+.+.
T Consensus 74 ~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~-~v-s~l~i~s~~~~~ 117 (617)
T PRK00095 74 RHATSKIASLDDLEAIRTLGFRGEALPSIA-SV-SRLTLTSRTADA 117 (617)
T ss_pred ccCCCCCCChhHhhccccCCcchhHHHhhh-hc-eEEEEEEecCCC
Confidence 44444421 12 245677777763322 34 489999998764
No 13
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.38 E-value=1.3e-12 Score=150.88 Aligned_cols=139 Identities=22% Similarity=0.296 Sum_probs=99.7
Q ss_pred eeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-c
Q 006073 144 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 221 (662)
Q Consensus 144 ~~~v~p~~L~sl-sts~~~~~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-f 221 (662)
+-.+++...+++ +...+..|.+|++|||+||+||||++|+|.++ ++|...|.|.|||+||+++|+.-++. .
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve-------~gG~~~I~V~DNG~Gi~~~Dl~la~~rH 76 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVE-------GGGLKLIRVRDNGSGIDKEDLPLALLRH 76 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEc-------cCCccEEEEEECCCCCCHHHHHHHHhhh
Confidence 778999999999 55677899999999999999999999999998 56788899999999999999988764 4
Q ss_pred ccCC-CCCCCCCcccccCceeeeec---cccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcCcccCCCCcEEEE
Q 006073 222 GHKQ-PDADDPNRIGRFGVGFKTGA---MRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 294 (662)
Q Consensus 222 G~s~-k~~~~~~~IG~fGiGfKsA~---~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~~~~~Gt~I~l 294 (662)
.+|. ...+|...|-.| ||..-+ ++--.+++|.||+.+. . ..|+.+.+|..-.+-..+.-...||+|++
T Consensus 77 aTSKI~~~~DL~~I~Tl--GFRGEAL~SIasVsrlti~Srt~~~-~--~~~~~~~~g~~~~~~~~p~a~~~GTtVeV 148 (638)
T COG0323 77 ATSKIASLEDLFRIRTL--GFRGEALASIASVSRLTITSRTAEA-S--EGTQIYAEGGGMEVTVKPAAHPVGTTVEV 148 (638)
T ss_pred ccccCCchhHHHHhhcc--CccHHHHHHHHhhheeEEEeecCCc-C--ceEEEEecCCcccccccCCCCCCCCEEEe
Confidence 4443 223345566655 888644 4556899999995553 2 23333334332221112223345999876
No 14
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=4.7e-12 Score=134.76 Aligned_cols=141 Identities=19% Similarity=0.254 Sum_probs=97.2
Q ss_pred ceeeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh
Q 006073 142 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 220 (662)
Q Consensus 142 ~~~~~v~p~~L~sl-sts~~~~~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~ 220 (662)
|.+.++++..++.+ +...+.++..||.|||+||+||+|+.|.|.+.. .+...|.|.|||.||+.+++..++.
T Consensus 1 ~~I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~ 73 (312)
T TIGR00585 1 MTIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEE-------GGLKLIEVSDNGSGIDKEDLPLACE 73 (312)
T ss_pred CcCeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCEEEEEEEecCCCCCHHHHHHHhh
Confidence 34678999999999 446567899999999999999999999988863 2334699999999999999998875
Q ss_pred cccCCCCC-----CCCCcccccCceeeeeccccCCeEEEEEee-CCCCceeEEEeeecCCCccEEEcCcccCCCCcEEEE
Q 006073 221 FGHKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQT-ADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 294 (662)
Q Consensus 221 fG~s~k~~-----~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~-~g~~s~~~ls~sf~~g~~~i~VP~~~~~~~Gt~I~l 294 (662)
.+.+.+.. ......|..|.|+. +...++ +++|.||+ .+. ..++.+. . +|. .+.-....-...||+|++
T Consensus 74 ~~~tsk~~~~~~~~~~~~~G~rG~al~-si~~~s-~~~i~S~~~~~~-~~~~~~~-~-~g~-~~~~~~~~~~~~GTtV~v 147 (312)
T TIGR00585 74 RHATSKIQSFEDLERIETLGFRGEALA-SISSVS-RLTITTKTSAAD-GLAWQAL-L-EGG-MIEEIKPAPRPVGTTVEV 147 (312)
T ss_pred CCCcCCCCChhHhhcccccCccchHHH-HHHhhC-cEEEEEeecCCC-cceEEEE-E-CCC-cCcccccccCCCccEEEE
Confidence 43333321 12456799999883 333345 89999998 443 2343333 2 222 111111222358999887
Q ss_pred E
Q 006073 295 D 295 (662)
Q Consensus 295 ~ 295 (662)
.
T Consensus 148 ~ 148 (312)
T TIGR00585 148 R 148 (312)
T ss_pred c
Confidence 4
No 15
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.11 E-value=2.5e-10 Score=124.40 Aligned_cols=136 Identities=22% Similarity=0.244 Sum_probs=101.2
Q ss_pred cccCHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCC
Q 006073 159 HSGWIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPN 232 (662)
Q Consensus 159 ~~~~~f~AIaELIdNA~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~ 232 (662)
-+.++.++|+|||+||+||.. ..|.|.|+.+ +.+...+.|+|||.|++.+.+.++|+ +-++++-....+
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-----~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~Q 107 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-----GKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQ 107 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec-----CCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhh
Confidence 345678999999999999953 6788888753 46678899999999999999999876 333333223468
Q ss_pred cccccCceeeeec----cccCCeEEEEEeeCCCCceeEEEeeec-CCCccEEEcCcccC----CCCcEEEEEeccc
Q 006073 233 RIGRFGVGFKTGA----MRLGKDALVLTQTADSRSIAFLSQSLN-QGKDNLEIPIVSYY----RKGQFMELDTVVQ 299 (662)
Q Consensus 233 ~IG~fGiGfKsA~----~~lg~~v~V~Sk~~g~~s~~~ls~sf~-~g~~~i~VP~~~~~----~~Gt~I~l~~~~~ 299 (662)
..||+|+|.+.|. |..|+.+.|+|++.++..+...+-..+ ..++..++....++ -+||.|++.++..
T Consensus 108 sRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~~~~~ 183 (538)
T COG1389 108 SRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELELKGV 183 (538)
T ss_pred ccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEEeccc
Confidence 8999999997654 477999999999998776666665443 33445555443332 3799999998754
No 16
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.96 E-value=1.7e-09 Score=120.29 Aligned_cols=139 Identities=21% Similarity=0.349 Sum_probs=106.0
Q ss_pred eeeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHH-hh
Q 006073 143 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM-TY 220 (662)
Q Consensus 143 ~~~~v~p~~L~sl-sts~~~~~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~-l~ 220 (662)
.+-+++..+++++ +...+..|..||.|||.||+||++|.|.|.+. ++|-..|.|.|||.||.++||.-. =+
T Consensus 7 ~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk-------~GGLKLlQisDnG~GI~reDl~ilCeR 79 (694)
T KOG1979|consen 7 KIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVK-------DGGLKLLQISDNGSGIRREDLPILCER 79 (694)
T ss_pred hhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEe-------cCCeEEEEEecCCCccchhhhHHHHHH
Confidence 5788999999999 44666899999999999999999999999887 467788999999999999999765 46
Q ss_pred cccCCC-CCCCCCcccccCceeee---eccccCCeEEEEEeeCCCCceeEEEeeecCCCccEE-EcCcccCCCCcEEEE
Q 006073 221 FGHKQP-DADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLE-IPIVSYYRKGQFMEL 294 (662)
Q Consensus 221 fG~s~k-~~~~~~~IG~fGiGfKs---A~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~-VP~~~~~~~Gt~I~l 294 (662)
|.+|.- ..+|...+..| ||.. |+++-..+|+|.||+.+..+..-.++. +|. .. -|.+.--.+||.|++
T Consensus 80 ftTSKL~kFEDL~~lsTy--GFRGEALASiShVA~VtV~TK~~~~~cayrasY~--DGk--m~~~pKpcAgk~GT~I~v 152 (694)
T KOG1979|consen 80 FTTSKLTKFEDLFSLSTY--GFRGEALASISHVAHVTVTTKTAEGKCAYRASYR--DGK--MIATPKPCAGKQGTIITV 152 (694)
T ss_pred hhhhhcchhHHHHhhhhc--CccHHHHhhhhheeEEEEEEeecCceeeeEEEee--ccc--cccCCCCccCCCceEEEe
Confidence 877653 33567777777 6764 667778999999999988654333333 321 11 244555567888876
No 17
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.89 E-value=3.2e-09 Score=120.58 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=89.7
Q ss_pred eecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHH-hhcc
Q 006073 145 VRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM-TYFG 222 (662)
Q Consensus 145 ~~v~p~~L~sl-sts~~~~~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~-l~fG 222 (662)
.+++++..|.+ +.+.+.++.+|++|||+||+||||+.|+|.++ +.|...|.|.|||+|++..++.-+ +...
T Consensus 2 k~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~k-------dyG~d~IEV~DNG~GI~~~n~~~l~lkh~ 74 (672)
T KOG1978|consen 2 KQIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVK-------DYGSDSIEVSDNGSGISATDFEGLALKHT 74 (672)
T ss_pred CCCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecC-------CCCcceEEEecCCCCCCccchhhhhhhhh
Confidence 35778888999 55566789999999999999999999999997 347889999999999999887764 2222
Q ss_pred cCC-CCCCCCCcccccCceeeeecc---ccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcCcccCCCCcEEEE
Q 006073 223 HKQ-PDADDPNRIGRFGVGFKTGAM---RLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 294 (662)
Q Consensus 223 ~s~-k~~~~~~~IG~fGiGfKsA~~---~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~~~~~Gt~I~l 294 (662)
+|. ....|. ..-+-.||..-++ .-=.+++|.|++... -+|..+. | +..+.+.--.+.-...||+|.+
T Consensus 75 TSKi~~f~Dl--~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~-~vgt~l~-~-Dh~G~I~~k~~~ar~~GTTV~v 145 (672)
T KOG1978|consen 75 TSKIVSFADL--AVLFTLGFRGEALSSLCALGDVMISTRSHSA-KVGTRLV-Y-DHDGHIIQKKPVARGRGTTVMV 145 (672)
T ss_pred hhcccchhhh--hhhhhhhhHHHHHHhhhhccceEEEEeeccC-ccceeEE-E-ccCCceeeeccccCCCCCEEEH
Confidence 222 222232 2344557875443 333788888888632 2333221 1 1122332211223357898865
No 18
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.78 E-value=5.7e-08 Score=110.17 Aligned_cols=96 Identities=25% Similarity=0.405 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCCcccc
Q 006073 163 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 236 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~ 236 (662)
+..+|.|||+||+||.++ .|.|.+... ..+.+...|.|.|||.||+++++.+++. |.++.+........|.
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~---~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~ 113 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRV---DEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQ 113 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEc---cCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCC
Confidence 578899999999999865 466666521 0022346799999999999999999874 4333332111356799
Q ss_pred cCceeeeecc----ccCCeEEEEEeeCCC
Q 006073 237 FGVGFKTGAM----RLGKDALVLTQTADS 261 (662)
Q Consensus 237 fGiGfKsA~~----~lg~~v~V~Sk~~g~ 261 (662)
+|+|+..+.. ..|..+.|.|+..+.
T Consensus 114 ~GLGLsiv~~isq~~~G~~I~V~S~~~~g 142 (535)
T PRK04184 114 QGIGISAAVLYAQMTTGKPVRVISSTGGS 142 (535)
T ss_pred CCcchHHHHHHHHHhcCCcEEEEEecCCC
Confidence 9999965532 236678999987654
No 19
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.65 E-value=1.3e-07 Score=109.85 Aligned_cols=130 Identities=20% Similarity=0.299 Sum_probs=84.7
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCCccc
Q 006073 162 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 235 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG 235 (662)
++..+|.|||+||+||++. .|.|.+.. ......|.|.|||.||+++++.+++. |.++++-.......|
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG 119 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEE------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRG 119 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEE------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCC
Confidence 4678999999999999875 46666653 22335799999999999999999985 554433211235568
Q ss_pred ccCceeeeecc----ccCCeEEEEEeeCCCCceeEEEeeecCCC-c-cEE-EcCcccC-CCCcEEEEEec
Q 006073 236 RFGVGFKTGAM----RLGKDALVLTQTADSRSIAFLSQSLNQGK-D-NLE-IPIVSYY-RKGQFMELDTV 297 (662)
Q Consensus 236 ~fGiGfKsA~~----~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~-~-~i~-VP~~~~~-~~Gt~I~l~~~ 297 (662)
+.|+|+.++.. .-|..+.|.|+..+......+......+. . .+. .....|. .+||.|++.+.
T Consensus 120 ~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~Lf 189 (795)
T PRK14868 120 QQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELEME 189 (795)
T ss_pred CCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEEEE
Confidence 89999965542 34788999999876543322333332332 1 221 1112344 47999988753
No 20
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.60 E-value=2.1e-07 Score=104.66 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=70.1
Q ss_pred cCHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCCcc
Q 006073 161 GWIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRI 234 (662)
Q Consensus 161 ~~~f~AIaELIdNA~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~I 234 (662)
..+..++.|||+||+||.++ .|.|.+... +.+...|.|.|||.||+++++..++. |.++.+........
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-----g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~ 101 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-----GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSR 101 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccC
Confidence 34678999999999999875 566666531 11234799999999999999999875 44444432234567
Q ss_pred cccCceeeeecc----ccCCeEEEEEeeCCCC
Q 006073 235 GRFGVGFKTGAM----RLGKDALVLTQTADSR 262 (662)
Q Consensus 235 G~fGiGfKsA~~----~lg~~v~V~Sk~~g~~ 262 (662)
|.+|+|+.++.+ ..|..+.|.|++.+..
T Consensus 102 G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~ 133 (488)
T TIGR01052 102 GQQGIGISGAVLYSQMTTGKPVKVISSTGGEI 133 (488)
T ss_pred CCccEehhHHHHHHHHcCCceEEEEEecCCce
Confidence 899999965432 3456699999988653
No 21
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.52 E-value=3.5e-07 Score=106.27 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=83.4
Q ss_pred cCHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHH--------Hhh-cccCCCC
Q 006073 161 GWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD 227 (662)
Q Consensus 161 ~~~f~AIaELIdNA~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~--------~l~-fG~s~k~ 227 (662)
..+...+.||||||+|+ +|+.|.|.|.. ...|+|.|||.||+.+.... +|. +..+.+-
T Consensus 36 ~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~---------dg~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf 106 (631)
T PRK05559 36 RGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA---------DGSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKF 106 (631)
T ss_pred chhhhhhhhhhccccchhhcCCCCEEEEEEeC---------CCcEEEEEcCCCCCcccccccCCcchheeeeeccccCcc
Confidence 45778899999999998 79999999973 24899999999999988776 443 2222221
Q ss_pred C--CCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcCc-cc--CCCCcEEEEEe
Q 006073 228 A--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDT 296 (662)
Q Consensus 228 ~--~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~-~~--~~~Gt~I~l~~ 296 (662)
. ......|..|+|.+ +.-.++..+.|.|++++.. +.++|..|...-.++.. .. ..+||.|++.+
T Consensus 107 ~~~~yk~SgGl~GvGls-~vNalS~~l~V~s~r~g~~----~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~P 175 (631)
T PRK05559 107 SNKAYKFSGGLHGVGVS-VVNALSSRLEVEVKRDGKV----YRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWP 175 (631)
T ss_pred CCccccccCcccccchh-hhhhheeeEEEEEEeCCeE----EEEEEECCcCccCccccccccCCCCCcEEEEEE
Confidence 1 12357899999994 4455899999999987642 45566443211111111 11 45799998865
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.45 E-value=5.5e-07 Score=104.48 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=80.9
Q ss_pred HHHHHHHHhcccc---c-CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH--------HHHHhh-cccCCCCC--
Q 006073 164 FGAIAELVDNSRD---A-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDA-- 228 (662)
Q Consensus 164 f~AIaELIdNA~D---A-~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------l~~~l~-fG~s~k~~-- 228 (662)
..+|.||||||+| | +|++|.|.|.. ...|+|.|||.||+.++ +.-+|+ ...+.+-.
T Consensus 32 ~~lv~ElvdNsiDE~~ag~a~~I~V~i~~---------d~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~ 102 (625)
T TIGR01055 32 NHLVQEVIDNSVDEALAGFASIIMVILHQ---------DQSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNK 102 (625)
T ss_pred ceeehhhhhcccchhhcCCCCEEEEEEeC---------CCeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCC
Confidence 4469999999999 9 69999999972 26899999999999988 655553 22222211
Q ss_pred CCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcCc-cc--CCCCcEEEEEec
Q 006073 229 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDTV 297 (662)
Q Consensus 229 ~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~-~~--~~~Gt~I~l~~~ 297 (662)
.-....|..|+|++ +.-.++..+.|.|++++.. +.++|..|.-...++.. .. ...||+|++.+.
T Consensus 103 ~~~~SgG~~GvGls-~vnalS~~l~v~~~r~g~~----~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F~PD 169 (625)
T TIGR01055 103 NYHFSGGLHGVGIS-VVNALSKRVKIKVYRQGKL----YSIAFENGAKVTDLISAGTCGKRLTGTSVHFTPD 169 (625)
T ss_pred cceecCCCcchhHH-HHHHhcCeEEEEEEECCeE----EEEEEECCeEccccccccccCCCCCCeEEEEEEC
Confidence 12357899999994 4445899999999987753 55666444211111211 22 247999987543
No 23
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.33 E-value=2.8e-06 Score=100.13 Aligned_cols=120 Identities=17% Similarity=0.183 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcccc---cC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHH----------HHHHHhhcccCCCCC
Q 006073 163 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ----------DVVRMTYFGHKQPDA 228 (662)
Q Consensus 163 ~f~AIaELIdNA~D---A~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e----------el~~~l~fG~s~k~~ 228 (662)
+.-.+.||||||+| || |+.|.|.|.. ...++|.|||.||+.+ |+.-. .+..+.|-.
T Consensus 38 Lhhlv~EivdNaiDE~~AG~a~~I~V~i~~---------dgsIsV~DnGrGIPvd~h~~~g~~~~Elvlt-~lhAggKfd 107 (756)
T PRK14939 38 LHHMVYEVVDNAIDEALAGHCDDITVTIHA---------DGSVSVSDNGRGIPTDIHPEEGVSAAEVIMT-VLHAGGKFD 107 (756)
T ss_pred hhhhhhHhhcccccccccCCCCEEEEEEcC---------CCeEEEEEcCCcccCCcccccCCchhhheee-eecccCCCC
Confidence 34559999999999 99 9999999872 2489999999999987 32211 111122211
Q ss_pred C--CCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEc-CcccCCCCcEEEEEec
Q 006073 229 D--DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYYRKGQFMELDTV 297 (662)
Q Consensus 229 ~--~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP-~~~~~~~Gt~I~l~~~ 297 (662)
+ -.-.-|..|+|.+ +.-.+++.+.|.|++++.. +.++|..|.-.-.++ +..-...||+|++.+.
T Consensus 108 ~~~ykvSgGlhGvG~s-vvNAlS~~l~v~v~r~gk~----~~q~f~~G~~~~~l~~~g~~~~~GT~V~F~PD 174 (756)
T PRK14939 108 QNSYKVSGGLHGVGVS-VVNALSEWLELTIRRDGKI----HEQEFEHGVPVAPLKVVGETDKTGTEVRFWPS 174 (756)
T ss_pred CCcccccCCccCccce-EeehccCeEEEEEEeCCeE----EEEEEecCccccCccccCCcCCCCcEEEEEEC
Confidence 1 1336799999994 4555899999999987752 556665442111111 1112457999987553
No 24
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.30 E-value=2e-06 Score=99.42 Aligned_cols=115 Identities=19% Similarity=0.224 Sum_probs=74.3
Q ss_pred HHHHHhcccccC----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHH--------Hhhcc-cCCCC--CCCC
Q 006073 167 IAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTYFG-HKQPD--ADDP 231 (662)
Q Consensus 167 IaELIdNA~DA~----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~--------~l~fG-~s~k~--~~~~ 231 (662)
+.|||+||+||+ |+.|.|.|+. . ..|+|.|||.||+.+.... ++..- .+.+- ....
T Consensus 6 v~ElvdNAiD~~~~g~at~I~V~i~~-------~--g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k 76 (594)
T smart00433 6 VDEIVDNAADEALAGYMDTIKVTIDK-------D--NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYK 76 (594)
T ss_pred EeeehhcccchhccCCCCEEEEEEeC-------C--CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCcc
Confidence 789999999997 9999999973 2 3899999999998644221 12211 11121 1123
Q ss_pred CcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecC-CC--ccEEEcCcccCCCCcEEEEEe
Q 006073 232 NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ-GK--DNLEIPIVSYYRKGQFMELDT 296 (662)
Q Consensus 232 ~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~-g~--~~i~VP~~~~~~~Gt~I~l~~ 296 (662)
...|..|+|++ +.-.++..++|.|++++.. +.++|.. |. ....+. ..-...||.|+..+
T Consensus 77 ~s~G~~G~Gls-~vnalS~~l~v~~~~~g~~----~~~~~~~~G~~~~~~~~~-~~~~~~GT~V~F~P 138 (594)
T smart00433 77 VSGGLHGVGAS-VVNALSTEFEVEVARDGKE----YKQSFSNNGKPLSEPKII-GDTKKDGTKVTFKP 138 (594)
T ss_pred ccCCcccchHH-HHHHhcCceEEEEEeCCcE----EEEEEeCCCeECccceec-CCCCCCCcEEEEEE
Confidence 57899999994 4455899999999998653 4455533 21 111111 11235799998643
No 25
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.30 E-value=3.6e-06 Score=98.04 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcccc---cC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHH--------HHhhcc-cCCCCC-
Q 006073 163 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTYFG-HKQPDA- 228 (662)
Q Consensus 163 ~f~AIaELIdNA~D---A~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~--------~~l~fG-~s~k~~- 228 (662)
+.-.|.|||+||+| || |+.|.|.|.. ...|+|.|||.||+.+.-. .+|+.- .+.+-.
T Consensus 38 l~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~ 108 (638)
T PRK05644 38 LHHLVYEIVDNSIDEALAGYCDHIEVTINE---------DGSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGG 108 (638)
T ss_pred HHhhhHHhhhcccccccCCCCCEEEEEEeC---------CCcEEEEEeCccccCCccCCCCCCchHHheeeecccCccCC
Confidence 34458999999999 99 9999999972 2389999999999986221 122211 112211
Q ss_pred -CCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcC-cccCCCCcEEEEEe
Q 006073 229 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRKGQFMELDT 296 (662)
Q Consensus 229 -~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~-~~~~~~Gt~I~l~~ 296 (662)
.-....|..|+|+++ .-.++..++|.|++++. .+.++|..|.-.-.++. ..-...||+|+..+
T Consensus 109 ~~yk~s~G~~G~Gls~-vnalS~~~~v~t~r~g~----~~~~~~~~G~~~~~~~~~~~~~~~GT~I~F~P 173 (638)
T PRK05644 109 GGYKVSGGLHGVGVSV-VNALSTWLEVEVKRDGK----IYYQEYERGVPVTPLEVIGETDETGTTVTFKP 173 (638)
T ss_pred CcccccCCccccchhh-hhheeceEEEEEEeCCc----EEEEEEECCeEccCccccCCcCCCCcEEEEEE
Confidence 123478999999954 44589999999998775 23455544321101111 11235799998643
No 26
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.26 E-value=4.4e-06 Score=97.68 Aligned_cols=120 Identities=18% Similarity=0.126 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcccc---cC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH--------HHHhhc-ccCCCC--
Q 006073 163 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTYF-GHKQPD-- 227 (662)
Q Consensus 163 ~f~AIaELIdNA~D---A~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel--------~~~l~f-G~s~k~-- 227 (662)
+.-.+.|||+||+| || |+.|.|.|.. ...|+|.|||.||+.+-- ...+.. ..+.+-
T Consensus 31 l~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~ 101 (654)
T TIGR01059 31 LHHLVYEVVDNSIDEAMAGYCDTINVTIND---------DGSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDK 101 (654)
T ss_pred HHhhhHHhhhccccccccCCCCEEEEEEeC---------CCcEEEEEeCCCcCccccCcCCCCchHHheeeecccCccCC
Confidence 45569999999999 99 9999999973 235999999999997521 112221 112221
Q ss_pred CCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccE--EEcCcccCCCCcEEEEEec
Q 006073 228 ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL--EIPIVSYYRKGQFMELDTV 297 (662)
Q Consensus 228 ~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i--~VP~~~~~~~Gt~I~l~~~ 297 (662)
.......|..|+|++ +.-.+++.++|.|++++.. +.++|..|.-.- .+ ...-...||+|+....
T Consensus 102 ~~~k~s~G~~G~gl~-~inalS~~l~v~~~~~g~~----~~~~~~~G~~~~~l~~-~~~~~~~GT~V~F~pd 167 (654)
T TIGR01059 102 DSYKVSGGLHGVGVS-VVNALSEWLEVTVFRDGKI----YRQEFERGIPLGPLEV-VGETKKTGTTVRFWPD 167 (654)
T ss_pred CcceecCCccchhHH-HHHHhcCeEEEEEEECCeE----EEEEEeCCCcccCcee-ccCCCCCCcEEEEEEC
Confidence 112357899999995 4445899999999987653 455564442111 11 1122357999986553
No 27
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.23 E-value=4.2e-06 Score=97.03 Aligned_cols=94 Identities=26% Similarity=0.284 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCCcccc
Q 006073 163 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 236 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~ 236 (662)
+..++.|||+||+||++. .|.|.+... +.+...|.|.|||.||+++++.+++. |-...+-.......|.
T Consensus 37 L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-----g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~ 111 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAEILPDIKVEIEKL-----GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQ 111 (659)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCC
Confidence 347899999999999875 577776531 12234699999999999999999876 3333332112356788
Q ss_pred cCceeeeec----cccCCeEEEEEeeCCC
Q 006073 237 FGVGFKTGA----MRLGKDALVLTQTADS 261 (662)
Q Consensus 237 fGiGfKsA~----~~lg~~v~V~Sk~~g~ 261 (662)
.|+|+.++. +..|..+.|.|+..+.
T Consensus 112 rG~GLa~a~~vsql~~G~pI~I~S~~g~G 140 (659)
T PRK14867 112 QGIGAAGVLLFSQITTGKPLKITTSTGDG 140 (659)
T ss_pred CcccHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 999996554 2347778999987554
No 28
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.20 E-value=1e-06 Score=78.64 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
+..+|.||++||+++... .|.|.+.. ..+...|.|.|||.||+.+++.+++.-+.+.+. +....+.+|+|
T Consensus 6 l~~il~~ll~Na~~~~~~~~~I~i~~~~------~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~--~~~~~~g~GlG 77 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEGGKIDITIEE------DDDHLSIEISDNGVGIPPEELEKLFEPFFTSDK--SETSISGHGLG 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEEEEE------ETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS--SSGGSSSSSHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEE------ecCeEEEEEEeccccccccccccchhhcccccc--cccccCCCChH
Confidence 557899999999999765 77777764 235678999999999999999998763333221 34556679999
Q ss_pred eeeecc---ccCCeEEEEEee
Q 006073 241 FKTGAM---RLGKDALVLTQT 258 (662)
Q Consensus 241 fKsA~~---~lg~~v~V~Sk~ 258 (662)
|+.+.. .++-++.+.+..
T Consensus 78 L~~~~~~~~~~~g~l~~~~~~ 98 (111)
T PF02518_consen 78 LYIVKQIAERHGGELTIESSE 98 (111)
T ss_dssp HHHHHHHHHHTTEEEEEEEET
T ss_pred HHHHHHHHHHCCCEEEEEEcC
Confidence 975432 345566666653
No 29
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.90 E-value=9.1e-06 Score=92.70 Aligned_cols=139 Identities=18% Similarity=0.245 Sum_probs=83.5
Q ss_pred ecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHh-hccc
Q 006073 146 RADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGH 223 (662)
Q Consensus 146 ~v~p~~L~sl-sts~~~~~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l-~fG~ 223 (662)
.++..+-+++ +...+.++..++.|||.||+||+|+.|.|.+.. ....+.|.|||.||+++||..+- ++.+
T Consensus 4 ~L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~--------~t~sv~ViDdG~G~~rdDl~~lg~ry~T 75 (1142)
T KOG1977|consen 4 CLSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNM--------ETFSVQVIDDGFGMGRDDLEKLGNRYFT 75 (1142)
T ss_pred ccchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecC--------ceeEEEEEecCCCccHHHHHHHHhhhhh
Confidence 3455555666 444446788999999999999999999998874 25678999999999999998753 2222
Q ss_pred CC-CCCCCCCcccccCceeeeecc---ccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcCc-ccCCCCcEEEEE
Q 006073 224 KQ-PDADDPNRIGRFGVGFKTGAM---RLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-SYYRKGQFMELD 295 (662)
Q Consensus 224 s~-k~~~~~~~IG~fGiGfKsA~~---~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~-~~~~~Gt~I~l~ 295 (662)
|. ...++...--.| ||...++ +=-..+.|+|++.+-.. ++.-..|..|..-...++. +....||+|++.
T Consensus 76 SK~h~~ndl~~~~ty--GfRGeALasIsd~s~l~v~skkk~r~~-~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 76 SKCHSVNDLENPRTY--GFRGEALASISDMSSLVVISKKKNRTM-KTFVKKFQSGSALKALEIDVTRASSGTTVTVY 149 (1142)
T ss_pred hhceecccccccccc--ccchhhhhhhhhhhhhhhhhhhcCCch-hHHHHHHhccccceecccccccccCCcEEEeH
Confidence 21 111222233334 5554333 22356678888776421 1111112223333334442 233468988763
No 30
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.68 E-value=0.00015 Score=84.67 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=73.8
Q ss_pred HHHHHHhcccc----cCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHH--------Hhh-cccCCCCC--CC
Q 006073 166 AIAELVDNSRD----AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPDA--DD 230 (662)
Q Consensus 166 AIaELIdNA~D----A~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~--------~l~-fG~s~k~~--~~ 230 (662)
.+.|+||||+| ..++.|.|.|.. ...++|.|||.||+.+--.. .|+ +..+.+-. .-
T Consensus 38 lv~EIvdNavDE~~ag~~~~I~V~i~~---------dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~y 108 (637)
T TIGR01058 38 LVWEIVDNSVDEVLAGYADNITVTLHK---------DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGY 108 (637)
T ss_pred ehhhhhcchhhhhhcCCCcEEEEEEcC---------CCeEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcc
Confidence 37899999999 357899998872 35899999999998642111 121 11111211 11
Q ss_pred CCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCc---cEEEcCcccCCCCcEEEEEec
Q 006073 231 PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD---NLEIPIVSYYRKGQFMELDTV 297 (662)
Q Consensus 231 ~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~---~i~VP~~~~~~~Gt~I~l~~~ 297 (662)
.-.-|..|+|. ++.-.|+..+.|.+++++. .+.++|..|.. ...+. .....+||+|+..++
T Consensus 109 kvSGGlhGvG~-svvNAlS~~~~V~v~r~gk----~~~q~f~~Gg~~~~~l~~~-~~~~~~GT~V~F~PD 172 (637)
T TIGR01058 109 KTAGGLHGVGA-SVVNALSSWLEVTVKRDGQ----IYQQRFENGGKIVQSLKKI-GTTKKTGTLVHFHPD 172 (637)
T ss_pred cccCCcccccc-cccceeeceEEEEEEECCE----EEEEEEecCCcCcCCcccc-cCCCCCceEEEEEeC
Confidence 34569999999 4555689999999997774 45566654311 11111 122357999887654
No 31
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.00023 Score=81.49 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=92.8
Q ss_pred HHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH--------HHHHhh-cccCCCCCCC--C
Q 006073 167 IAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDADD--P 231 (662)
Q Consensus 167 IaELIdNA~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------l~~~l~-fG~s~k~~~~--~ 231 (662)
+.|.||||+|. .|+.|.|.|.. ...|+|.|||.||+-+- ++-+|+ +....|-.++ .
T Consensus 41 v~EVvDNsiDEalaG~~~~I~V~l~~---------d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~Yk 111 (635)
T COG0187 41 VWEVVDNSIDEALAGYADRIDVTLHE---------DGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYK 111 (635)
T ss_pred EeEeeechHhHHhhCcCcEEEEEEcC---------CCeEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccE
Confidence 88999999995 37889998863 57899999999998755 122232 1111121111 2
Q ss_pred CcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCc--cEE-EcCcccCCCCcEEEEEecccchhhhhhhh
Q 006073 232 NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE-IPIVSYYRKGQFMELDTVVQSEATAKYNL 308 (662)
Q Consensus 232 ~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~--~i~-VP~~~~~~~Gt~I~l~~~~~~e~~~~~~L 308 (662)
-+=|..|+|. ++.-.|+..+.|.+++++. .+.+.|..|.. .+. +-.+.....||+|+...+++.
T Consensus 112 vSGGLHGVG~-SVVNALS~~l~v~v~r~gk----~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD~~i-------- 178 (635)
T COG0187 112 VSGGLHGVGV-SVVNALSTWLEVEVKRDGK----IYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKPDPEI-------- 178 (635)
T ss_pred eecCCCccce-EEEecccceEEEEEEECCE----EEEEEEeCCCcCCCceecccCCCCCCccEEEEEcChHh--------
Confidence 3558899999 6666799999999999875 45566654432 222 111234457999887665431
Q ss_pred hhhhhcCCCchhhHHHhhccccCCCCCcEEEEEeccC
Q 006073 309 KSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 345 (662)
Q Consensus 309 ~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~NL~r 345 (662)
-.-..|....|...+..+.--..|..|.+.+-+.
T Consensus 179 ---F~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~ 212 (635)
T COG0187 179 ---FGETEFDYEILKRRLRELAFLNKGVKITLTDERT 212 (635)
T ss_pred ---cCCcccCHHHHHHHHHHHhccCCCCEEEEEeccC
Confidence 0002232222332222222225788888876543
No 32
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.39 E-value=0.00056 Score=85.08 Aligned_cols=86 Identities=21% Similarity=0.361 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHH----H--hhccc---CCCCC
Q 006073 163 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR----M--TYFGH---KQPDA 228 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~----~--l~fG~---s~k~~ 228 (662)
+.-.+-|+|+||.|-. ++.|.|.|+. ....|+|.|||.||+-+--.. . +-||. +.+-.
T Consensus 78 L~kifdEIldNAvDe~~r~g~~~~I~V~I~~--------~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFd 149 (1465)
T PLN03237 78 LYKIFDEILVNAADNKQRDPKMDSLRVVIDV--------EQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYD 149 (1465)
T ss_pred hhhhHHHHhhhhHhHHhhcCCCCEEEEEEEc--------CCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCC
Confidence 3445899999999953 4788888862 246899999999998652110 0 11222 22211
Q ss_pred --CCCCcccccCceeeeeccccCCeEEEEEe
Q 006073 229 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQ 257 (662)
Q Consensus 229 --~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk 257 (662)
.-.-.-|+.|+|.+ ..-.|+..+.|.++
T Consensus 150 d~~yKvSGGlhGVGas-vvNaLS~~f~Vev~ 179 (1465)
T PLN03237 150 DNEKKTTGGRNGYGAK-LTNIFSTEFVIETA 179 (1465)
T ss_pred CCcceeeccccccCcc-ccccccCeeEEEEE
Confidence 12456799999995 44558999999997
No 33
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.30 E-value=0.00045 Score=78.13 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=64.9
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccc
Q 006073 162 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 236 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~ 236 (662)
...+.+.-|||||+||-+ ..|.+.+.. ..+...|.|.|||+||+++....++..|.|.+. -+.
T Consensus 427 ~litIlGNLidNA~eA~~~~~~~k~I~l~i~~------~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~------~~~ 494 (537)
T COG3290 427 DLVTILGNLIDNALEALLAPEENKEIELSLSD------RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN------TGG 494 (537)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe------cCCEEEEEEeCCCCCCChHHHHHHHhcCccccC------CCC
Confidence 467889999999999966 567777764 345677899999999999999999999999875 234
Q ss_pred cCceeee---eccccCCeEEEEEe
Q 006073 237 FGVGFKT---GAMRLGKDALVLTQ 257 (662)
Q Consensus 237 fGiGfKs---A~~~lg~~v~V~Sk 257 (662)
-|+|++. ..=++|-.+.|.+.
T Consensus 495 rGiGL~Lvkq~V~~~~G~I~~~s~ 518 (537)
T COG3290 495 RGIGLYLVKQLVERLGGSIEVESE 518 (537)
T ss_pred CchhHHHHHHHHHHcCceEEEeeC
Confidence 4888863 22356777777775
No 34
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.24 E-value=0.00063 Score=57.99 Aligned_cols=73 Identities=18% Similarity=0.368 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
+..++.||++||+++.++ .|.|.+.. ..+...+.|.|+|.||+.+.+...+..+.+... .....++.|+|
T Consensus 6 l~~~~~~l~~n~~~~~~~~~~v~i~~~~------~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~~g~g 77 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPEGGRITVTLER------DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG--RSRKIGGTGLG 77 (111)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC--CCCCCCccccc
Confidence 567899999999999875 66666653 334568899999999999999887654433221 22344567888
Q ss_pred eee
Q 006073 241 FKT 243 (662)
Q Consensus 241 fKs 243 (662)
++.
T Consensus 78 l~~ 80 (111)
T smart00387 78 LSI 80 (111)
T ss_pred HHH
Confidence 864
No 35
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=97.22 E-value=0.00086 Score=77.97 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=72.4
Q ss_pred HHHHHhccccc------C-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHH-----H----hhccc---CCCC
Q 006073 167 IAELVDNSRDA------K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR-----M----TYFGH---KQPD 227 (662)
Q Consensus 167 IaELIdNA~DA------~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~-----~----l~fG~---s~k~ 227 (662)
+.|+||||+|- | ++.|+|.++ ...++|.|||.||+-+--.. . +-|+. +.+-
T Consensus 50 ~~EIldNavDe~~~~~~g~~~~I~V~i~----------dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkF 119 (602)
T PHA02569 50 IDEIIDNSVDEAIRTNFKFANKIDVTIK----------NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNF 119 (602)
T ss_pred eehhhhhhhhhhhccCCCCCcEEEEEEc----------CCEEEEEECCCcccCCcccccccccccceEEEEEeecccccc
Confidence 78999999994 3 677777775 35899999999998643211 0 11221 1121
Q ss_pred -CCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcCcccCCCCcEEEEEec
Q 006073 228 -ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTV 297 (662)
Q Consensus 228 -~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~~~~~Gt~I~l~~~ 297 (662)
..-.-.-|..|+|. ++.-.|+..+.|.++..+. .+.++|..|.....++...-..+||+|+..++
T Consensus 120 d~~ykvSGGlhGVG~-svvNaLS~~~~V~v~~~~~----~~~q~f~~G~~~~~~~~~~~~~~GT~V~F~PD 185 (602)
T PHA02569 120 DDTNRVTGGMNGVGS-SLTNFFSVLFIGETCDGKN----EVTVNCSNGAENISWSTKPGKGKGTSVTFIPD 185 (602)
T ss_pred CCcceeeCCcCCccc-eeeeccchhhheEEEcCCE----EEEEEecCCcccCCcccCCCCCCccEEEEEEC
Confidence 11234679999999 5555689999998865543 25666755432222222223357999887654
No 36
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.19 E-value=0.0007 Score=56.72 Aligned_cols=85 Identities=19% Similarity=0.252 Sum_probs=54.8
Q ss_pred HHHHHHHhcccccCC---CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCcee
Q 006073 165 GAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 241 (662)
Q Consensus 165 ~AIaELIdNA~DA~A---t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGf 241 (662)
.++.|||+||+++++ ..|.|.+.. ..+...+.|.|+|.||++..+...+...... ......+..|+|+
T Consensus 3 ~~~~~ll~Na~~~~~~~~~~v~i~~~~------~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~---~~~~~~~~~g~gl 73 (103)
T cd00075 3 QVLLNLLSNAIKHTPEGGGRITISVER------DGDHLEIRVEDNGPGIPEEDLERIFERFSDG---SRSRKGGGTGLGL 73 (103)
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---CCCCCCCccccCH
Confidence 579999999999987 445555542 2335678999999999999988876432111 1123345678888
Q ss_pred eeec---cccCCeEEEEEee
Q 006073 242 KTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 242 KsA~---~~lg~~v~V~Sk~ 258 (662)
+.+. .+.+.++.+.+..
T Consensus 74 ~~~~~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 74 SIVKKLVELHGGRIEVESEP 93 (103)
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 6432 2345566665543
No 37
>PRK10604 sensor protein RstB; Provisional
Probab=97.12 E-value=0.0011 Score=73.33 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCceee
Q 006073 163 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 242 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGfK 242 (662)
+..++..||+||+.++...|.|.+.. ..+.-.|.|.|||.||+++++.+.+.-.+..... ....-|.+|+|+.
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~------~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~-~~~~~~g~GLGL~ 392 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLL------DGNQACLIVEDDGPGIPPEERERVFEPFVRLDPS-RDRATGGCGLGLA 392 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEE------ECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCC-CCCCCCCccchHH
Confidence 55789999999999988888888764 2345679999999999999999987633322111 1122356899985
Q ss_pred ee---ccccCCeEEEEEee
Q 006073 243 TG---AMRLGKDALVLTQT 258 (662)
Q Consensus 243 sA---~~~lg~~v~V~Sk~ 258 (662)
.+ .-..|.++.|.+..
T Consensus 393 ivk~i~~~~gG~i~v~s~~ 411 (433)
T PRK10604 393 IVHSIALAMGGSVNCDESE 411 (433)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 32 22456666666643
No 38
>PRK10364 sensor protein ZraS; Provisional
Probab=97.00 E-value=0.0018 Score=71.84 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
+..++..||+||+++.+ ..|.|.+.. ..+.-.|.|.|||.||+++.+.+++.-+++.+. +..|+|
T Consensus 349 l~~il~NLl~NA~k~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-------~g~GlG 415 (457)
T PRK10364 349 LTQVLLNLYLNAIQAIGQHGVISVTASE------SGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA-------EGTGLG 415 (457)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------eCCeEEEEEEECCCCCCHHHHHHHhCccccCCC-------CCCccc
Confidence 56789999999999844 456666653 233468999999999999999999875555442 235888
Q ss_pred eeeec---cccCCeEEEEEe
Q 006073 241 FKTGA---MRLGKDALVLTQ 257 (662)
Q Consensus 241 fKsA~---~~lg~~v~V~Sk 257 (662)
+..+- -..|.++.+.+.
T Consensus 416 L~iv~~~v~~~gG~i~i~s~ 435 (457)
T PRK10364 416 LAVVHNIVEQHGGTIQVASQ 435 (457)
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 75321 235666666654
No 39
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.92 E-value=0.0023 Score=69.91 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCceee
Q 006073 163 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 242 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGfK 242 (662)
+..++.+||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+++.-++.... ... .+.+|+|+.
T Consensus 332 l~~il~NLl~NA~k~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~--~~~-~~g~GlGL~ 402 (435)
T PRK09467 332 IKRALANLVVNAARYGNGWIKVSSGT------EGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDS--ARG-SSGTGLGLA 402 (435)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEe------cCCEEEEEEEecCCCcCHHHHHHhcCCcccCCC--CCC-CCCeehhHH
Confidence 45679999999999998888888763 233457999999999999999988764332211 111 245788874
Q ss_pred ee---ccccCCeEEEEEe
Q 006073 243 TG---AMRLGKDALVLTQ 257 (662)
Q Consensus 243 sA---~~~lg~~v~V~Sk 257 (662)
-+ .-..|.++.+.+.
T Consensus 403 iv~~i~~~~~g~l~i~~~ 420 (435)
T PRK09467 403 IVKRIVDQHNGKVELGNS 420 (435)
T ss_pred HHHHHHHHCCCEEEEEEC
Confidence 22 1124555655553
No 40
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.91 E-value=0.002 Score=70.50 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCceee
Q 006073 163 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 242 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGfK 242 (662)
+..++.+||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.++.... .....+.+|+|+.
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~-~~~~~~g~GlGL~ 426 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSV------DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEA-RDRESGGTGLGLA 426 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEE------ECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcc-cCCCCCCcchhHH
Confidence 45678999999999988888888764 2345579999999999999999887533322111 1123356789985
Q ss_pred ee---ccccCCeEEEEEe
Q 006073 243 TG---AMRLGKDALVLTQ 257 (662)
Q Consensus 243 sA---~~~lg~~v~V~Sk 257 (662)
.+ ....+.++.+.|.
T Consensus 427 iv~~~v~~~~G~l~~~s~ 444 (461)
T PRK09470 427 IVENAIQQHRGWVKAEDS 444 (461)
T ss_pred HHHHHHHHCCCEEEEEEC
Confidence 32 2234556666554
No 41
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.87 E-value=0.0029 Score=75.77 Aligned_cols=117 Identities=20% Similarity=0.235 Sum_probs=74.8
Q ss_pred HHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHH--------Hhh-------cccCC--
Q 006073 167 IAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-------FGHKQ-- 225 (662)
Q Consensus 167 IaELIdNA~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~--------~l~-------fG~s~-- 225 (662)
|.|+||||+|. .++.|.|.|.. ...++|.|||.||+-+.-.+ +|+ |+...
T Consensus 134 v~EIlDNSVDE~laG~~~~I~V~i~~---------DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~ 204 (903)
T PTZ00109 134 LFEILDNSVDEYLAGECNKITVVLHK---------DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPK 204 (903)
T ss_pred EEEEeeccchhhccCCCcEEEEEEcC---------CCeEEEEeCCccccccccccCCCcceeEEEEEeccCccccCcccc
Confidence 78999999995 36888888862 35899999999998743221 111 32210
Q ss_pred -----------------C---------------C--CCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeee
Q 006073 226 -----------------P---------------D--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSL 271 (662)
Q Consensus 226 -----------------k---------------~--~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf 271 (662)
+ . ..=.-.-|..|+|. ++.=.|+..+.|.+++++. .+.++|
T Consensus 205 ~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~-SVVNALS~~l~VeV~RdGK----~y~q~F 279 (903)
T PTZ00109 205 NSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGL-SVVNALSSFLKVDVFKGGK----IYSIEL 279 (903)
T ss_pred cccccccccccccccccccccccccccccccccccCCcceecCcCCCcce-eeeeeccCeEEEEEEECCE----EEEEEe
Confidence 0 0 00023678999999 6666799999999999876 566777
Q ss_pred cCCCc--cEEEcCcccCCCCcEEEEEec
Q 006073 272 NQGKD--NLEIPIVSYYRKGQFMELDTV 297 (662)
Q Consensus 272 ~~g~~--~i~VP~~~~~~~Gt~I~l~~~ 297 (662)
..|.- .+.+--..-..+||+|+..+.
T Consensus 280 ~rG~~v~pLkvig~~~~~tGT~VtF~PD 307 (903)
T PTZ00109 280 SKGKVTKPLSVFSCPLKKRGTTIHFLPD 307 (903)
T ss_pred CCCcccCCccccCCcCCCCceEEEEEeC
Confidence 55421 111111111347999887654
No 42
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.83 E-value=0.0031 Score=68.66 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
+..++.+||+||++++. ..|.|.+.. ..+...|.|.|||.||+++.+.+++.-.+..+... ...-+..|+|
T Consensus 354 l~~~~~nll~Nai~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~-~~~~~g~GlG 426 (457)
T TIGR01386 354 FRRAISNLLSNALRHTPDGGTITVRIER------RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPAR-SNSGEGTGLG 426 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhccccccCCccc-CCCCCCcccc
Confidence 56789999999999874 356666653 23456799999999999999998876333322111 1122347888
Q ss_pred eeeec---cccCCeEEEEE
Q 006073 241 FKTGA---MRLGKDALVLT 256 (662)
Q Consensus 241 fKsA~---~~lg~~v~V~S 256 (662)
++.+. -++|..+.+.+
T Consensus 427 L~i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 427 LAIVRSIMEAHGGRASAES 445 (457)
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 75321 23455555555
No 43
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.78 E-value=0.0021 Score=64.98 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=51.3
Q ss_pred cCHHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCc
Q 006073 161 GWIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 239 (662)
Q Consensus 161 ~~~f~AIaELIdNA~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGi 239 (662)
.++..++..||+||++|.. ..|.|.+.. ..+.-.|.|.|||.||+++.+..++..+++.+... . ..|+
T Consensus 227 ~~l~~vl~nLi~NAi~~~~~~~i~i~~~~------~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~--~---g~Gl 295 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTPGGEITISVRQ------DDEQVTISVEDTGPGIPEEELERIFEPFFRTDKSR--S---GTGL 295 (336)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEEe------cCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCC--C---CCCc
Confidence 3566789999999999994 778877763 12246799999999999999888876555443211 1 3567
Q ss_pred eee
Q 006073 240 GFK 242 (662)
Q Consensus 240 GfK 242 (662)
|++
T Consensus 296 GL~ 298 (336)
T COG0642 296 GLA 298 (336)
T ss_pred cHH
Confidence 764
No 44
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.74 E-value=0.0027 Score=67.73 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=59.2
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCc
Q 006073 162 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 239 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGi 239 (662)
|+..++..||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+.+.-.+.... .-+..|+
T Consensus 247 ~l~~il~nLi~NA~k~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~Gl 315 (356)
T PRK10755 247 LLRLLLRNLVENAHRYSPEGSTITIKLSQ------EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS-----RYGGIGL 315 (356)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC-----CCCCcCH
Confidence 456789999999999863 567776653 334568999999999999999988763332211 1245688
Q ss_pred eeeee---ccccCCeEEEEEeeC
Q 006073 240 GFKTG---AMRLGKDALVLTQTA 259 (662)
Q Consensus 240 GfKsA---~~~lg~~v~V~Sk~~ 259 (662)
|++.+ .-.+|..+.+.|...
T Consensus 316 GL~i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 316 GLSIVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC
Confidence 88532 224566677766543
No 45
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.74 E-value=0.0034 Score=68.46 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcccccCCCc------cEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccc
Q 006073 163 IFGAIAELVDNSRDAKATK------LEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 236 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~------V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~ 236 (662)
+-.++.+|+.||+++.+.. |.|.... ..+.-.|+|.|||.||+++...+.|.-.++.+.. ..+.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~----~~~G 457 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTAL------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG----SRKH 457 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC----CCCC
Confidence 4568999999999984332 4444332 3345679999999999999999988633333311 1333
Q ss_pred cCceeeeec---cccCCeEEEEEe
Q 006073 237 FGVGFKTGA---MRLGKDALVLTQ 257 (662)
Q Consensus 237 fGiGfKsA~---~~lg~~v~V~Sk 257 (662)
-|+|+..+- -.+|-.+.|.|.
T Consensus 458 ~GlGL~i~~~iv~~~gG~i~~~s~ 481 (494)
T TIGR02938 458 IGMGLSVAQEIVADHGGIIDLDDD 481 (494)
T ss_pred CcccHHHHHHHHHHcCCEEEEEEC
Confidence 578875321 135666766664
No 46
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.73 E-value=0.0046 Score=67.47 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCceee
Q 006073 163 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 242 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGfK 242 (662)
+..+|..||+||+.+......|.+.... ...+.-.|.|.|||.||+++++.+++.-.+..+. ....+.+|+|+.
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~---~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~---~~~~~G~GLGL~ 346 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLH---RTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR---DEGTEGYGIGLS 346 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEe---cCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC---CCCCCcccccHH
Confidence 4578999999999987644344443210 0223457899999999999999998863332221 112245788885
Q ss_pred ee---ccccCCeEEEEEeeC
Q 006073 243 TG---AMRLGKDALVLTQTA 259 (662)
Q Consensus 243 sA---~~~lg~~v~V~Sk~~ 259 (662)
.+ .-.+|..+.|.|...
T Consensus 347 i~~~iv~~~gG~i~v~s~~~ 366 (380)
T PRK09303 347 VCRRIVRVHYGQIWVDSEPG 366 (380)
T ss_pred HHHHHHHHcCCEEEEEecCC
Confidence 32 124577777776544
No 47
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.66 E-value=0.0051 Score=68.84 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcccccCC----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccC
Q 006073 163 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 238 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fG 238 (662)
+..++.+|++||++|.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++.-+++.+. +..|
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-------~g~G 500 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHY------RNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-------SNRG 500 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHhCCCccCC-------CCCc
Confidence 55789999999999842 356666553 234567899999999999999998875554432 1348
Q ss_pred ceeeeec---cccCCeEEEEEe
Q 006073 239 VGFKTGA---MRLGKDALVLTQ 257 (662)
Q Consensus 239 iGfKsA~---~~lg~~v~V~Sk 257 (662)
+|+..+- -..|..+.|.|.
T Consensus 501 lGL~iv~~iv~~~~G~i~v~s~ 522 (542)
T PRK11086 501 VGLYLVKQSVENLGGSIAVESE 522 (542)
T ss_pred CcHHHHHHHHHHcCCEEEEEeC
Confidence 8875321 234555666553
No 48
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.63 E-value=0.0069 Score=62.44 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
+..++.+||.||+++... .|.|.+.. ..+.-.|.|.|||.||+++.+.+++...+..... .....+..|+|
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~------~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~-~~~~~~g~glG 302 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRR------DGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKS-RSRDTGGTGLG 302 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEE------cCCEEEEEEEecCCCCCHHHHhhhccCceecCcc-cccCCCCCccc
Confidence 567899999999998654 45555442 2334679999999999999999987633322111 01122335888
Q ss_pred eeeec---cccCCeEEEEEee
Q 006073 241 FKTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 241 fKsA~---~~lg~~v~V~Sk~ 258 (662)
++.+- -..|.++.+.|..
T Consensus 303 L~~~~~~~~~~gG~i~~~s~~ 323 (333)
T TIGR02966 303 LAIVKHVLSRHHARLEIESEL 323 (333)
T ss_pred HHHHHHHHHHCCCEEEEEecC
Confidence 86422 2356777776643
No 49
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.55 E-value=0.0097 Score=74.56 Aligned_cols=122 Identities=18% Similarity=0.244 Sum_probs=76.8
Q ss_pred HHHHHHHHHhccccc--------CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHH--H----hhccc---CC
Q 006073 163 IFGAIAELVDNSRDA--------KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M----TYFGH---KQ 225 (662)
Q Consensus 163 ~f~AIaELIdNA~DA--------~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~--~----l~fG~---s~ 225 (662)
+.-.+-|+|+||.|- .++.|.|.|+. +...|+|.|||.||+-+--.. + +-||+ +.
T Consensus 58 L~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~--------d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGg 129 (1388)
T PTZ00108 58 LYKIFDEILVNAADNKARDKGGHRMTYIKVTIDE--------ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSS 129 (1388)
T ss_pred hhhhHHHHhhhhhhhhcccCCCCCccEEEEEEec--------cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccc
Confidence 445589999999994 24788888873 236899999999997643111 0 11322 22
Q ss_pred CCC--CCCCcccccCceeeeeccccCCeEEEEEeeC--CCCceeEEEeeecCCCccEEEcCc-cc-C-CCCcEEEEEec
Q 006073 226 PDA--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTA--DSRSIAFLSQSLNQGKDNLEIPIV-SY-Y-RKGQFMELDTV 297 (662)
Q Consensus 226 k~~--~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~--g~~s~~~ls~sf~~g~~~i~VP~~-~~-~-~~Gt~I~l~~~ 297 (662)
+-. ...-.-|+.|+|.+ +.-.++..+.|.++.. +. .+.++|..|.....-|.. .. . .+||.|+..+.
T Consensus 130 kfdd~~yKvSGGlhGVGas-vvNalS~~f~Vev~r~~~gk----~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~PD 203 (1388)
T PTZ00108 130 NYDDTEKRVTGGRNGFGAK-LTNIFSTKFTVECVDSKSGK----KFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFYPD 203 (1388)
T ss_pred cCCCCceeeecccccCCcc-ccccccceEEEEEEECCCCC----EEEEEecCCCcCCCCCccCCCCCCCCceEEEEEeC
Confidence 211 12456899999995 4455999999999988 53 455666544212222322 22 2 57999887654
No 50
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.50 E-value=0.0072 Score=66.56 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=56.6
Q ss_pred CHHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCc
Q 006073 162 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 239 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~At--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGi 239 (662)
.+..++.+||+||+++... .|.|.+.. ..+...|.|.|||.||+++++.+++.-.+..+.. .....|..|+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~GL 389 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQR------VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKA-RSRQTGGSGL 389 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCC-CCCCCCCCch
Confidence 3567899999999999654 35554442 2334679999999999999999987633322111 1122345688
Q ss_pred eeeeec---cccCCeEEEEEe
Q 006073 240 GFKTGA---MRLGKDALVLTQ 257 (662)
Q Consensus 240 GfKsA~---~~lg~~v~V~Sk 257 (662)
|+..+- -..|..+.|.|.
T Consensus 390 GL~ivk~iv~~~gG~i~i~s~ 410 (430)
T PRK11006 390 GLAIVKHALSHHDSRLEIESE 410 (430)
T ss_pred HHHHHHHHHHHCCCEEEEEec
Confidence 885321 234666666654
No 51
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.45 E-value=0.0055 Score=75.69 Aligned_cols=122 Identities=19% Similarity=0.242 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHH----H--hhccc---CCCCC
Q 006073 163 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR----M--TYFGH---KQPDA 228 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~----~--l~fG~---s~k~~ 228 (662)
+.-.+-|+|+||.|-. ++.|.|.|+. +...|+|.|||.||+-+--.. + +-||. +.+-.
T Consensus 53 L~ki~dEIldNAvDe~~~~g~~~~I~V~i~~--------~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFd 124 (1135)
T PLN03128 53 LYKIFDEILVNAADNKQRDPSMDSLKVDIDV--------EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFD 124 (1135)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEEEEc--------CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccC
Confidence 3445899999999953 3788888862 246899999999998652111 0 11221 22211
Q ss_pred --CCCCcccccCceeeeeccccCCeEEEEEe--eCCCCceeEEEeeecCCCccEEEcCc-cc--CCCCcEEEEEec
Q 006073 229 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQ--TADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDTV 297 (662)
Q Consensus 229 --~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk--~~g~~s~~~ls~sf~~g~~~i~VP~~-~~--~~~Gt~I~l~~~ 297 (662)
.-.-.-|+.|+|.+ ..-.|+..+.|.++ +++. .+.++|..|......|.. .. ..+||+|+..+.
T Consensus 125 d~~ykvSGGlhGvGas-vvNaLS~~f~Vev~d~r~gk----~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF~PD 195 (1135)
T PLN03128 125 DNEKKTTGGRNGYGAK-LANIFSTEFTVETADGNRGK----KYKQVFTNNMSVKSEPKITSCKASENWTKITFKPD 195 (1135)
T ss_pred CccceeeccccCCCCe-EEEeecCeEEEEEEECCCCe----EEEEEeCCCcccCCCceeccCCCCCCceEEEEEEC
Confidence 12456799999995 44559999999998 4443 455666544222122221 22 247999887654
No 52
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.39 E-value=0.0072 Score=66.11 Aligned_cols=88 Identities=20% Similarity=0.228 Sum_probs=58.3
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCc
Q 006073 162 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 239 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGi 239 (662)
++..++.+||.||+.+.. ..|.|.+.. ..+...|+|.|||.||+++++.+.+.-.++.... ...-+..|+
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~--~~~~~~~Gl 439 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEV------DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP--ANGRKSTGL 439 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC--CCCCCCcch
Confidence 466889999999999864 467776653 3445679999999999999999987644332211 111234588
Q ss_pred eeeeec---cccCCeEEEEEe
Q 006073 240 GFKTGA---MRLGKDALVLTQ 257 (662)
Q Consensus 240 GfKsA~---~~lg~~v~V~Sk 257 (662)
|++.+- -.+|..+.+.|.
T Consensus 440 GL~i~~~~~~~~~G~i~i~s~ 460 (475)
T PRK11100 440 GLAFVREVARLHGGEVTLRNR 460 (475)
T ss_pred hHHHHHHHHHHCCCEEEEEEc
Confidence 876422 234566666664
No 53
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.38 E-value=0.0055 Score=69.22 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcccccC------CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccc
Q 006073 163 IFGAIAELVDNSRDAK------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 236 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~ 236 (662)
+...+.+||+||+++. ...|.|.+.. ..+.-.|.|.|||.||+++++.+++.-+++.+.. .-|.
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~----~~~g 502 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD----EPGE 502 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC----CCCC
Confidence 4457899999999983 3556666653 2345678999999999999999998766664421 1244
Q ss_pred cCceeeeec---cccCCeEEEEE
Q 006073 237 FGVGFKTGA---MRLGKDALVLT 256 (662)
Q Consensus 237 fGiGfKsA~---~~lg~~v~V~S 256 (662)
.|+|+..+- -..|..+.|.|
T Consensus 503 ~GlGL~ivk~iv~~~~G~i~v~s 525 (545)
T PRK15053 503 HGIGLYLIASYVTRCGGVITLED 525 (545)
T ss_pred ceeCHHHHHHHHHHcCCEEEEEE
Confidence 588885321 12444555554
No 54
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.34 E-value=0.0085 Score=65.94 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
+..++.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.+..+.. .....|..|+|
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~-~~~~~~g~GlG 425 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQ------RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGS-RNRASGGSGLG 425 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCC-cCCCCCCCcHH
Confidence 456899999999998654 46666553 2345678899999999999999887532222211 12234567899
Q ss_pred eeee---ccccCCeEEEEEee
Q 006073 241 FKTG---AMRLGKDALVLTQT 258 (662)
Q Consensus 241 fKsA---~~~lg~~v~V~Sk~ 258 (662)
+..+ .-..|.++.+.+..
T Consensus 426 L~iv~~i~~~~~G~l~~~s~~ 446 (466)
T PRK10549 426 LAICLNIVEAHNGRIIAAHSP 446 (466)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 8532 12456666666543
No 55
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.25 E-value=0.0089 Score=67.67 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCceee
Q 006073 163 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 242 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGfK 242 (662)
+..++..||+||+++....+.|.+.. ..+.-.|.|.|||.||+++++.+.+.-++.... ..+..|+|+.
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~-----~~~G~GLGL~ 447 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQ------TDEHLHIVVEDDGPGIPESKRELIFDRGQRADT-----LRPGQGLGLS 447 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC-----CCCCcchhHH
Confidence 45689999999999988888887763 234457899999999999999888753332211 1124688885
Q ss_pred eec---cccCCeEEEEEe
Q 006073 243 TGA---MRLGKDALVLTQ 257 (662)
Q Consensus 243 sA~---~~lg~~v~V~Sk 257 (662)
.+. -..|.++.|.+.
T Consensus 448 Ivk~iv~~~gG~i~v~s~ 465 (485)
T PRK10815 448 VAREITEQYEGKISAGDS 465 (485)
T ss_pred HHHHHHHHcCCEEEEEEC
Confidence 321 134555555553
No 56
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.18 E-value=0.0089 Score=70.28 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH-HHHHhhcccCCCCCCCCCcccccCc
Q 006073 163 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD-VVRMTYFGHKQPDADDPNRIGRFGV 239 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee-l~~~l~fG~s~k~~~~~~~IG~fGi 239 (662)
+..++.+||+||+++.. ..|.|.+.. ..+.-.|.|.|||.||+++. ..+.+...++.+. +..|+
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~-------~G~GL 646 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVER------ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG-------AGMGI 646 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEE------cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC-------CCcch
Confidence 45679999999999964 457777663 23456799999999999998 5666654333331 34588
Q ss_pred eeeeec---cccCCeEEEEEee
Q 006073 240 GFKTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 240 GfKsA~---~~lg~~v~V~Sk~ 258 (662)
|++.+- -.+|.++.|.|..
T Consensus 647 GL~i~~~iv~~~gG~i~v~s~~ 668 (679)
T TIGR02916 647 GVYECRQYVEEIGGRIEVESTP 668 (679)
T ss_pred hHHHHHHHHHHcCCEEEEEecC
Confidence 875431 2356666666643
No 57
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.16 E-value=0.011 Score=66.01 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcccccCCCc--cEEEEEecccccCCCCC-CEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCc
Q 006073 163 IFGAIAELVDNSRDAKATK--LEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 239 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~--V~I~I~~~~~~~~~~~~-~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGi 239 (662)
+..++.+||+||+.+.... |.|.+.. ..+. ..|.|.|||.||+++++.+.+...++.+. +..|+
T Consensus 501 l~~~~~nli~na~~~~~~~~~i~v~~~~------~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-------~g~gl 567 (607)
T PRK11360 501 LKQVLLNILINAVQAISARGKIRIRTWQ------YSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA-------KGTGL 567 (607)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEE------cCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC-------CCCch
Confidence 5577999999999986544 4444432 1223 78999999999999999888764443331 23477
Q ss_pred eeeee---ccccCCeEEEEEee
Q 006073 240 GFKTG---AMRLGKDALVLTQT 258 (662)
Q Consensus 240 GfKsA---~~~lg~~v~V~Sk~ 258 (662)
|+..+ .-.+|.++.|.|..
T Consensus 568 GL~~~~~~~~~~~G~i~~~s~~ 589 (607)
T PRK11360 568 GLALSQRIINAHGGDIEVESEP 589 (607)
T ss_pred hHHHHHHHHHHcCCEEEEEEcC
Confidence 77532 12456667766643
No 58
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.88 E-value=0.012 Score=67.60 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcccccCC----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCC
Q 006073 163 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQ 225 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~ 225 (662)
+...+-.||+||+||-+ ..|.|.... .++.-.|+|.|||.|+.++-+.++|. |-+++
T Consensus 498 LeQVLvNLl~NALDA~~~~~~~~i~i~~~~------~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK 559 (603)
T COG4191 498 LEQVLVNLLQNALDAMAGQEDRRLSIRAQR------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTK 559 (603)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeeEEEEEe------cCCeEEEEEccCCCCCCHHHHHhhcCCccccC
Confidence 66779999999999954 567776653 34567899999999999999999987 54443
No 59
>PRK10337 sensor protein QseC; Provisional
Probab=95.79 E-value=0.021 Score=62.80 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCceee
Q 006073 163 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 242 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGfK 242 (662)
+..++.+||+||+.+......|.+... ...|.|.|||.||+++++.+.+.-.+..+. ...+.+|+|+.
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~--------~~~i~i~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 420 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLN--------ARNFTVRDNGPGVTPEALARIGERFYRPPG----QEATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEE--------eeEEEEEECCCCCCHHHHHHhcccccCCCC----CCCCccchHHH
Confidence 446789999999998765444444321 237999999999999999988753222211 12245788875
Q ss_pred ee---ccccCCeEEEEEe
Q 006073 243 TG---AMRLGKDALVLTQ 257 (662)
Q Consensus 243 sA---~~~lg~~v~V~Sk 257 (662)
.+ .-..|.++.+.+.
T Consensus 421 iv~~i~~~~gg~l~~~s~ 438 (449)
T PRK10337 421 IVRRIAKLHGMNVSFGNA 438 (449)
T ss_pred HHHHHHHHcCCEEEEEec
Confidence 32 1234666666554
No 60
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.75 E-value=0.025 Score=68.09 Aligned_cols=86 Identities=10% Similarity=0.185 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCcee
Q 006073 163 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 241 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGf 241 (662)
+..+|..||+||+++.. ..|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.+..+ ...+..|+|+
T Consensus 514 l~~il~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-----~~~~g~GLGL 582 (921)
T PRK15347 514 LRQILVNLLGNAVKFTETGGIRLRVKR------HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQAD-----THSQGTGLGL 582 (921)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhcCcccCC-----CCCCCCchHH
Confidence 45789999999999853 457777653 23456789999999999999999875322221 1124568887
Q ss_pred eeec---cccCCeEEEEEeeC
Q 006073 242 KTGA---MRLGKDALVLTQTA 259 (662)
Q Consensus 242 KsA~---~~lg~~v~V~Sk~~ 259 (662)
..+- -.+|.++.|.|...
T Consensus 583 ~i~~~~~~~~gG~i~i~s~~~ 603 (921)
T PRK15347 583 TIASSLAKMMGGELTLFSTPG 603 (921)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 5322 24577788777544
No 61
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.66 E-value=0.026 Score=67.11 Aligned_cols=92 Identities=14% Similarity=0.238 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCcee
Q 006073 163 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 241 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGf 241 (662)
+..++..||+||+++.. ..|.|.+... ..+.-.|.|.|||.||+++++.++|...+..+........+.-|+|+
T Consensus 399 l~qvl~NLl~NAik~~~~g~v~i~~~~~-----~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL 473 (779)
T PRK11091 399 LRQILWNLISNAVKFTQQGGVTVRVRYE-----EGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGL 473 (779)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEEc-----cCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHH
Confidence 45789999999999864 4577766531 13346789999999999999999886333322111223345567887
Q ss_pred eee---ccccCCeEEEEEeeC
Q 006073 242 KTG---AMRLGKDALVLTQTA 259 (662)
Q Consensus 242 KsA---~~~lg~~v~V~Sk~~ 259 (662)
..+ .-..|..+.|.|...
T Consensus 474 ~i~~~iv~~~gG~i~v~s~~g 494 (779)
T PRK11091 474 AVSKRLAQAMGGDITVTSEEG 494 (779)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 422 124688888887654
No 62
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.63 E-value=0.033 Score=51.70 Aligned_cols=81 Identities=20% Similarity=0.156 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccc
Q 006073 162 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 236 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~ 236 (662)
.+-.++.||+.||+..+ ...|.|.+.. ..+...|.|.|+|.||+. +.+.+.-..+.+. ..+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~------~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~-----~~~~ 105 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEENCEGVVYISATI------EDHEVYITVRDEGIGIEN--LEEAREPLYTSKP-----ELER 105 (137)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEE------eCCEEEEEEEEcCCCcCc--hhHhhCCCcccCC-----CCCC
Confidence 35578999999999754 2457776653 234567899999999973 3344332222221 1134
Q ss_pred cCceeeeeccccCCeEEEEE
Q 006073 237 FGVGFKTGAMRLGKDALVLT 256 (662)
Q Consensus 237 fGiGfKsA~~~lg~~v~V~S 256 (662)
.|+|+.. .-++..++.+.+
T Consensus 106 ~GlGL~l-v~~~~~~l~~~~ 124 (137)
T TIGR01925 106 SGMGFTV-MENFMDDVSVDS 124 (137)
T ss_pred CcccHHH-HHHhCCcEEEEE
Confidence 5777742 223445555544
No 63
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.51 E-value=0.035 Score=65.99 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
+..++..||+||+++.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++.-..+.+.. ....-+..|+|
T Consensus 598 L~~il~NLI~NAik~s~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~-~~~~~~g~GLG 670 (703)
T TIGR03785 598 IAQMLDKLVDNAREFSPEDGLIEVGLSQ------NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQ-GAQDQPHLGLG 670 (703)
T ss_pred HHHHHHHHHHHHHHHCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCC-CCCCCCCccHH
Confidence 45679999999999854 346665543 2345679999999999999999988643332211 11122347888
Q ss_pred eeee---ccccCCeEEEEEee
Q 006073 241 FKTG---AMRLGKDALVLTQT 258 (662)
Q Consensus 241 fKsA---~~~lg~~v~V~Sk~ 258 (662)
++.+ ....|.++.+.+..
T Consensus 671 L~Ivr~Iv~~~gG~I~v~s~~ 691 (703)
T TIGR03785 671 LYIVRLIADFHQGRIQAENRQ 691 (703)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 8643 22456667666653
No 64
>PRK09835 sensor kinase CusS; Provisional
Probab=95.47 E-value=0.036 Score=61.19 Aligned_cols=87 Identities=14% Similarity=0.184 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCCcccccCc
Q 006073 163 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGV 239 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~fGi 239 (662)
+..++.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++...+. |-..... ....-+..|+
T Consensus 376 l~~vl~nll~Na~~~~~~~~~I~i~~~~------~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~--~~~~~~g~Gl 447 (482)
T PRK09835 376 LRRAISNLLSNALRYTPAGEAITVRCQE------VDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPS--RQRKGEGSGI 447 (482)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC--CCCCCCCcch
Confidence 56789999999999854 346666653 23346799999999999999998875 3222111 1112245788
Q ss_pred eeeee---ccccCCeEEEEEe
Q 006073 240 GFKTG---AMRLGKDALVLTQ 257 (662)
Q Consensus 240 GfKsA---~~~lg~~v~V~Sk 257 (662)
|+..+ .-..|.++.+.|.
T Consensus 448 GL~i~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 448 GLAIVKSIVVAHKGTVAVTSD 468 (482)
T ss_pred HHHHHHHHHHHCCCEEEEEEC
Confidence 88432 1235666666663
No 65
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=95.41 E-value=0.034 Score=58.86 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccc--cCCCC----CCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCccc
Q 006073 163 IFGAIAELVDNSRDAK-ATKLEISIESIYFK--KAGKD----IPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 235 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~-At~V~I~I~~~~~~--~~~~~----~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG 235 (662)
+..++..||+||+++. .....|.+...... ....+ ...|.|.|||.||+++.+.+.+.-+++.+. +
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-------~ 310 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-------G 310 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-------C
Confidence 5678999999999985 33334444321100 00001 135899999999999998887753333321 2
Q ss_pred ccCceeeee---ccccCCeEEEEEee
Q 006073 236 RFGVGFKTG---AMRLGKDALVLTQT 258 (662)
Q Consensus 236 ~fGiGfKsA---~~~lg~~v~V~Sk~ 258 (662)
..|+|+..+ .-..|.++.|.|..
T Consensus 311 g~GlGL~i~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 311 GTGLGLSIARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred CccCCHHHHHHHHHHcCCeEEEEecC
Confidence 347787422 22456677776643
No 66
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.33 E-value=0.033 Score=67.10 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeccccc---------CCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCC
Q 006073 163 IFGAIAELVDNSRDAKA--TKLEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 231 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A--t~V~I~I~~~~~~~---------~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~ 231 (662)
+..++..||+||+++.. ..|.|.+....... ...+.-.|.|.|||.||+++++.+++.-.++.+.
T Consensus 561 L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---- 636 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---- 636 (828)
T ss_pred HHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC----
Confidence 56789999999999843 45666665310000 0123456899999999999999998763333221
Q ss_pred CcccccCceeeee---ccccCCeEEEEEeeC
Q 006073 232 NRIGRFGVGFKTG---AMRLGKDALVLTQTA 259 (662)
Q Consensus 232 ~~IG~fGiGfKsA---~~~lg~~v~V~Sk~~ 259 (662)
+..|+|+..+ .-..|.++.|.|...
T Consensus 637 ---~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 637 ---GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred ---CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 4568887532 224677777777543
No 67
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=95.02 E-value=0.052 Score=65.49 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCcee
Q 006073 163 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 241 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGf 241 (662)
+..++..||+||+.+.. ..|.|.+.. ..+...|.|.|||.||+++++.+.+.-.+... ...|..|+|+
T Consensus 562 l~qil~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-----~~~~g~GLGL 630 (914)
T PRK11466 562 IRQVITNLLSNALRFTDEGSIVLRSRT------DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS-----GKRGGTGLGL 630 (914)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHhchhhcCC-----CCCCCCcccH
Confidence 44678999999999853 456666653 23345789999999999999999875322211 1125578887
Q ss_pred eee---ccccCCeEEEEEeeC
Q 006073 242 KTG---AMRLGKDALVLTQTA 259 (662)
Q Consensus 242 KsA---~~~lg~~v~V~Sk~~ 259 (662)
..+ .-.+|.++.|.|...
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~~ 651 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTPE 651 (914)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 532 225678888887654
No 68
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=94.92 E-value=0.061 Score=65.17 Aligned_cols=87 Identities=16% Similarity=0.265 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCC-CEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCCcccccCc
Q 006073 163 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGV 239 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A-t~V~I~I~~~~~~~~~~~~-~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~fGi 239 (662)
+..++..||+||+.+.. ..|.|.+.. ..+. -.|.|.|+|.||+++++.+++. |..... ....|..|+
T Consensus 580 l~~il~nLi~NAik~~~~g~i~i~~~~------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~~g~GL 649 (968)
T TIGR02956 580 IRQVLINLVGNAIKFTDRGSVVLRVSL------NDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADG----RRRSGGTGL 649 (968)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEEEE------cCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCC----CCCCCCccH
Confidence 45679999999999854 457777653 2233 6799999999999999999875 433221 122355688
Q ss_pred eeeee---ccccCCeEEEEEeeC
Q 006073 240 GFKTG---AMRLGKDALVLTQTA 259 (662)
Q Consensus 240 GfKsA---~~~lg~~v~V~Sk~~ 259 (662)
|+..+ .-.+|.++.|.|...
T Consensus 650 GL~i~~~l~~~~gG~i~~~s~~~ 672 (968)
T TIGR02956 650 GLAISQRLVEAMDGELGVESELG 672 (968)
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 88532 224677888877654
No 69
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=94.80 E-value=0.065 Score=58.66 Aligned_cols=74 Identities=23% Similarity=0.456 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcccccC----------CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCC--C
Q 006073 163 IFGAIAELVDNSRDAK----------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD--D 230 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~----------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~--~ 230 (662)
+.-.+-||..||..|- -..|.|.+-. +.+...+.|.|-|+|++++++..++.|++|..... +
T Consensus 261 L~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d 334 (414)
T KOG0787|consen 261 LYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSD 334 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCC
Confidence 3456889999999992 2457777753 45567889999999999999999999998865321 1
Q ss_pred ---CCcccccCceee
Q 006073 231 ---PNRIGRFGVGFK 242 (662)
Q Consensus 231 ---~~~IG~fGiGfK 242 (662)
.....-||-|+-
T Consensus 335 ~~~~~plaGfG~GLP 349 (414)
T KOG0787|consen 335 NNRTAPLAGFGFGLP 349 (414)
T ss_pred CCCcCcccccccCCc
Confidence 334555777764
No 70
>PRK10490 sensor protein KdpD; Provisional
Probab=94.78 E-value=0.052 Score=66.24 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
+..++..||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.++.+. ....+..|+|
T Consensus 779 L~qVL~NLL~NAik~s~~g~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~---~~~~~G~GLG 849 (895)
T PRK10490 779 FERVLINLLENAVKYAGAQAEIGIDAHV------EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK---ESAIPGVGLG 849 (895)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCC---CCCCCCccHH
Confidence 567899999999998644 45555542 234567899999999999999988763332221 1122346788
Q ss_pred eeeec---cccCCeEEEEEee
Q 006073 241 FKTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 241 fKsA~---~~lg~~v~V~Sk~ 258 (662)
+..+- -..|.++.+.|..
T Consensus 850 L~Ivk~ive~hGG~I~v~s~~ 870 (895)
T PRK10490 850 LAICRAIVEVHGGTIWAENRP 870 (895)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 75321 1356677776643
No 71
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.60 E-value=0.078 Score=62.76 Aligned_cols=87 Identities=20% Similarity=0.327 Sum_probs=53.7
Q ss_pred HHHHHHHHhcccccCC--------------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHH------------
Q 006073 164 FGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR------------ 217 (662)
Q Consensus 164 f~AIaELIdNA~DA~A--------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~------------ 217 (662)
..+|..||.||+|+|- ..|.|.... ..+.-.|.|.|||.||+++.+.+
T Consensus 387 ~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~------~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ 460 (670)
T PRK10547 387 IDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH------QGGNICIEVTDDGAGLNRERILAKAASQGLAVSEN 460 (670)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCcccc
Confidence 3446789999999862 245665542 23455789999999999987653
Q ss_pred ---------HhhcccCCCCCCCCCcccccCceeee---eccccCCeEEEEEee
Q 006073 218 ---------MTYFGHKQPDADDPNRIGRFGVGFKT---GAMRLGKDALVLTQT 258 (662)
Q Consensus 218 ---------~l~fG~s~k~~~~~~~IG~fGiGfKs---A~~~lg~~v~V~Sk~ 258 (662)
.|.-|++.+.. ...+...|+|+.. ..-.++..+.|.|..
T Consensus 461 ls~~e~~~lIF~pgfst~~~--~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~ 511 (670)
T PRK10547 461 MSDEEVGMLIFAPGFSTAEQ--VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ 511 (670)
T ss_pred CCHHHHHHHhhcCCcccccc--cccCCCCchhHHHHHHHHHHcCCEEEEEecC
Confidence 22234444321 1223446888742 223567777777754
No 72
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.36 E-value=0.1 Score=62.82 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~fGiG 240 (662)
+..++..||+||+.+.. ..|.|.+..... ..+...-.|.|.|||.||+++++.+.+. |-..... .....|..|+|
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~~-~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~~~~g~GLG 485 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRAL-SNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS--ISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEec-CCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC--CCCCCCCcchh
Confidence 45789999999999853 345555542110 0011124588999999999999998875 4322111 12234567888
Q ss_pred eeee---ccccCCeEEEEEeeCC
Q 006073 241 FKTG---AMRLGKDALVLTQTAD 260 (662)
Q Consensus 241 fKsA---~~~lg~~v~V~Sk~~g 260 (662)
+..+ .-.+|.++.|.|....
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~ 508 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNR 508 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCC
Confidence 8532 2246788888886543
No 73
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.16 E-value=0.11 Score=63.80 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~fGiG 240 (662)
+..+|..||+||+.+.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+.+. |-..... .....+..|+|
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~------~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~--~~~~~~GtGLG 634 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRV------DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTG--VQRNFQGTGLG 634 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEE------eCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCC--CCCCCCCeehh
Confidence 45789999999999853 346666553 23456789999999999999999875 3221111 11222446888
Q ss_pred eeeec---cccCCeEEEEEeeC
Q 006073 241 FKTGA---MRLGKDALVLTQTA 259 (662)
Q Consensus 241 fKsA~---~~lg~~v~V~Sk~~ 259 (662)
+..+. -.+|.++.|.|...
T Consensus 635 L~I~k~lv~~~gG~I~v~S~~g 656 (924)
T PRK10841 635 LAICEKLINMMDGDISVDSEPG 656 (924)
T ss_pred HHHHHHHHHHCCCEEEEEEcCC
Confidence 75331 24678888888644
No 74
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=94.12 E-value=0.069 Score=51.76 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh
Q 006073 163 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 220 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~ 220 (662)
+-.|+.|++.||+..+- ..|.|.+.. ..+...+.|.|+|.||+++.+...+.
T Consensus 43 l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~g~d~~~~~~~~~ 99 (161)
T PRK04069 43 MKIAVSEACTNAVQHAYKEDEVGEIHIRFEI------YEDRLEIVVADNGVSFDYETLKSKLG 99 (161)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------ECCEEEEEEEECCcCCChHHhccccC
Confidence 45789999999998864 246666553 34567899999999999888766554
No 75
>PRK03660 anti-sigma F factor; Provisional
Probab=94.00 E-value=0.17 Score=47.34 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCH
Q 006073 163 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 212 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 212 (662)
+..++.||+.||+..+. ..|.|.+.. ..+...+.|.|+|.||+.
T Consensus 40 l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~------~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 40 IKTAVSEAVTNAIIHGYENNPDGVVYIEVEI------EEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------CCCEEEEEEEEccCCCCh
Confidence 55789999999997542 346666543 234567899999999985
No 76
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=93.69 E-value=0.14 Score=49.70 Aligned_cols=85 Identities=18% Similarity=0.084 Sum_probs=53.2
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccc
Q 006073 162 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 236 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~ 236 (662)
.+--|+.|++.||+..+- ..|.|.+.. ..+...+.|.|+|.|++++.+...+......... +....|
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~-~~~~~~- 113 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHI------YEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI-DDLREG- 113 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------eCCEEEEEEEEcccccCchhhccccCCCCCCCCc-ccCCCC-
Confidence 355789999999998852 356666653 3446778899999999988766543321111110 111223
Q ss_pred cCceeeeeccccCCeEEEEE
Q 006073 237 FGVGFKTGAMRLGKDALVLT 256 (662)
Q Consensus 237 fGiGfKsA~~~lg~~v~V~S 256 (662)
|.|+... =++.+++.+.+
T Consensus 114 -G~GL~Li-~~L~D~v~~~~ 131 (159)
T TIGR01924 114 -GLGLFLI-ETLMDEVEVYE 131 (159)
T ss_pred -ccCHHHH-HHhccEEEEEe
Confidence 7787433 25677777765
No 77
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=93.49 E-value=0.19 Score=61.51 Aligned_cols=92 Identities=15% Similarity=0.236 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~fGiG 240 (662)
+..++..||+||+.+.+ ..|.|.+.... ...+.-.|.|.|+|.||+++++.+++. |-. .+.. ...-+..|+|
T Consensus 566 L~QVL~NLL~NAik~t~~G~I~I~v~~~~---~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t-~~~~--~~~~~GtGLG 639 (894)
T PRK10618 566 LRKILLLLLNYAITTTAYGKITLEVDQDE---SSPDRLTIRILDTGAGVSIKELDNLHFPFLN-QTQG--DRYGKASGLT 639 (894)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcc---CCCcEEEEEEEECCCCCCHHHHHHhcCcccc-CCCC--CCCCCCcChh
Confidence 45678999999999854 35666665310 012345789999999999999999875 422 2211 1112345777
Q ss_pred eeee---ccccCCeEEEEEeeCC
Q 006073 241 FKTG---AMRLGKDALVLTQTAD 260 (662)
Q Consensus 241 fKsA---~~~lg~~v~V~Sk~~g 260 (662)
+..+ .-.+|..+.|.|....
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~ 662 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGL 662 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCC
Confidence 7322 2246888888886543
No 78
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=93.48 E-value=0.11 Score=59.23 Aligned_cols=75 Identities=19% Similarity=0.408 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcccc-cCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCcee
Q 006073 163 IFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 241 (662)
Q Consensus 163 ~f~AIaELIdNA~D-A~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGf 241 (662)
...-++|-+.||+. |.|++|+|.+.. ..+...+.|+|||+|++.. ....|.||+-.
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~------~~g~~~~~VeDnG~Gi~~~-----------------~e~~gHyGL~I 538 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQ------NDGQVTLTVEDNGVGIDEA-----------------AEPSGHYGLNI 538 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEe------cCCeEEEEEeeCCcCCCCc-----------------cCCCCCcchHH
Confidence 34458999999997 589999999874 3478899999999999764 24567887764
Q ss_pred ee-eccccCCeEEEEEeeCC
Q 006073 242 KT-GAMRLGKDALVLTQTAD 260 (662)
Q Consensus 242 Ks-A~~~lg~~v~V~Sk~~g 260 (662)
-. =+-+++..+.|..+..+
T Consensus 539 M~ERA~~L~~~L~i~~~~~g 558 (574)
T COG3850 539 MRERAQRLGGQLRIRRREGG 558 (574)
T ss_pred HHHHHHHhcCeEEEeecCCC
Confidence 10 12257777777776544
No 79
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.42 E-value=0.15 Score=46.41 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCccccc
Q 006073 163 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 237 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~f 237 (662)
+.-|+.|++.||+..+.. .|.|.+.. ..+.-.|.|.|+|.|+++..+.....-.. .....|
T Consensus 32 ~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~------~~~~l~i~v~D~G~~~d~~~~~~~~~~~~------~~~~~~-- 97 (125)
T PF13581_consen 32 LELAVSEALTNAVEHGYPGDPDGPVDVRLEV------DPDRLRISVRDNGPGFDPEQLPQPDPWEP------DSLREG-- 97 (125)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE------cCCEEEEEEEECCCCCChhhccCcccccC------CCCCCC--
Confidence 567999999999998653 46666553 34567889999999999886544321110 112223
Q ss_pred CceeeeeccccCCeEEE
Q 006073 238 GVGFKTGAMRLGKDALV 254 (662)
Q Consensus 238 GiGfKsA~~~lg~~v~V 254 (662)
|.|+.. .-++.+++.+
T Consensus 98 G~Gl~l-i~~l~D~~~~ 113 (125)
T PF13581_consen 98 GRGLFL-IRSLMDEVDY 113 (125)
T ss_pred CcCHHH-HHHHHcEEEE
Confidence 666632 2346777777
No 80
>PRK13557 histidine kinase; Provisional
Probab=93.12 E-value=0.25 Score=54.96 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccccCCCc--cEEEEEeccccc---------CCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCC
Q 006073 163 IFGAIAELVDNSRDAKATK--LEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 231 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~--V~I~I~~~~~~~---------~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~ 231 (662)
+..++..|+.||+++.... +.|......... ...+.-.|.|.|||.||+++.+.+++...++.+.
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 4567899999999985433 444332110000 0112346899999999999999888764443331
Q ss_pred CcccccCceeeee---ccccCCeEEEEEeeC
Q 006073 232 NRIGRFGVGFKTG---AMRLGKDALVLTQTA 259 (662)
Q Consensus 232 ~~IG~fGiGfKsA---~~~lg~~v~V~Sk~~ 259 (662)
..+..|+|+..+ .-.+|..+.|.|...
T Consensus 354 -~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 354 -EGKGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred -CCCCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 123457887422 234677888877543
No 81
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.94 E-value=0.12 Score=56.11 Aligned_cols=71 Identities=24% Similarity=0.376 Sum_probs=52.5
Q ss_pred CHHHHHHHHHhccccc-CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 162 WIFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA-~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
.+|-++.|.|.|++.. +|+.+.|.+.. ..+.-.|.|.|||.|.+.+... | |.|
T Consensus 279 ~l~rivQEaltN~~rHa~A~~v~V~l~~------~~~~l~l~V~DnG~Gf~~~~~~------------------~--~~G 332 (365)
T COG4585 279 ALFRIVQEALTNAIRHAQATEVRVTLER------TDDELRLEVIDNGVGFDPDKEG------------------G--GFG 332 (365)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEEEE------cCCEEEEEEEECCcCCCccccC------------------C--Ccc
Confidence 3778899999999985 79999999985 3456889999999998765411 2 344
Q ss_pred eee---eccccCCeEEEEEee
Q 006073 241 FKT---GAMRLGKDALVLTQT 258 (662)
Q Consensus 241 fKs---A~~~lg~~v~V~Sk~ 258 (662)
+++ =...+|..+.|.|..
T Consensus 333 L~~mreRv~~lgG~l~i~S~~ 353 (365)
T COG4585 333 LLGMRERVEALGGTLTIDSAP 353 (365)
T ss_pred hhhHHHHHHHcCCEEEEEecC
Confidence 432 223578888888866
No 82
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=92.86 E-value=0.26 Score=61.59 Aligned_cols=93 Identities=11% Similarity=0.164 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcccccCCC-ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCcee
Q 006073 163 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 241 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At-~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGf 241 (662)
+..++..||+||+++... .+.|.+.... .......-.|.|.|||.||+++++.+++.-.+..+. ....+..|+|+
T Consensus 829 l~qvl~NLl~NAik~~~~g~i~i~~~~~~-~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~---~~~~~G~GLGL 904 (1197)
T PRK09959 829 FKQVLSNLLSNALKFTTEGAVKITTSLGH-IDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA---GRQQTGSGLGL 904 (1197)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEee-ecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc---CCCCCCcCchH
Confidence 557899999999998643 3555443210 000111235789999999999999998763222221 11223468888
Q ss_pred eee---ccccCCeEEEEEeeC
Q 006073 242 KTG---AMRLGKDALVLTQTA 259 (662)
Q Consensus 242 KsA---~~~lg~~v~V~Sk~~ 259 (662)
..+ .-..|.++.|.|...
T Consensus 905 ~i~~~iv~~~gG~i~v~s~~~ 925 (1197)
T PRK09959 905 MICKELIKNMQGDLSLESHPG 925 (1197)
T ss_pred HHHHHHHHHcCCEEEEEeCCC
Confidence 533 124677788877543
No 83
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.66 E-value=0.56 Score=56.10 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCC
Q 006073 163 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP 226 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k 226 (662)
+..+|-.|||||.....+..+|.|.... ..+.-.+.|.|+|.|++.+++.+.|. |-...+
T Consensus 776 ieQVLiNLleNA~Kyap~~s~I~I~~~~----~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~ 836 (890)
T COG2205 776 IEQVLINLLENALKYAPPGSEIRINAGV----ERENVVFSVIDEGPGIPEGELERIFDKFYRGNK 836 (890)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEE----ecceEEEEEEeCCCCCChhHHHHhhhhhhcCCC
Confidence 3467899999999987655444444211 34567889999999999999999985 544433
No 84
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.43 E-value=0.45 Score=56.86 Aligned_cols=100 Identities=23% Similarity=0.353 Sum_probs=63.5
Q ss_pred eecCHHHHHHhhcccccCHHHHHHHHHhcccccCC--------------CccEEEEEecccccCCCCCCEEEEEeCCCCC
Q 006073 145 VRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGM 210 (662)
Q Consensus 145 ~~v~p~~L~slsts~~~~~f~AIaELIdNA~DA~A--------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GM 210 (662)
.-++..+|..++ ..|..||-||+|.|- ..|.+.... .++.-.|.|.|||.||
T Consensus 423 telDksIlE~l~--------dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~------~gn~ivIev~DDG~Gi 488 (716)
T COG0643 423 TELDKSILERLG--------DPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYH------EGNNIVIEVSDDGAGI 488 (716)
T ss_pred eeehHHHHHHhc--------ccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEc------CCCeEEEEEeeCCCCC
Confidence 345555555442 346789999999972 345544432 3456678999999999
Q ss_pred CHHHHHH-Hhh-----------------------cccCCCCCCCCCcccccCcee---eeeccccCCeEEEEEeeCC
Q 006073 211 THQDVVR-MTY-----------------------FGHKQPDADDPNRIGRFGVGF---KTGAMRLGKDALVLTQTAD 260 (662)
Q Consensus 211 t~eel~~-~l~-----------------------fG~s~k~~~~~~~IG~fGiGf---KsA~~~lg~~v~V~Sk~~g 260 (662)
+++.+.+ ++. -|+|.+. ....+.--|||| |+..-+||-.+.|.|+...
T Consensus 489 d~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~--~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~ 563 (716)
T COG0643 489 DREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAE--QVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGK 563 (716)
T ss_pred CHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcch--hhhcccCCccCHHHHHHHHHHcCCEEEEEecCCC
Confidence 9998764 332 2444432 233445558997 4555678888888886543
No 85
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=91.16 E-value=0.29 Score=55.16 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=38.6
Q ss_pred CHHHHHHHHHhcccccCC----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHh
Q 006073 162 WIFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 219 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~A----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l 219 (662)
.|--.|-=||+||+-||. ....|.+.... ..+.-.+.|.|||.||+++......
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~----~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAKK----QDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEEE----cCCEEEEEEeeCCCCCChhHHHHHH
Confidence 366678889999999974 34455554311 2456678999999999998876654
No 86
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=91.08 E-value=0.22 Score=56.85 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 006073 163 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 213 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 213 (662)
...++.|+++||+.+. +..|.|.+.. .++.-.|.|.|||.||+++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~------~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQ------QDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCEEEEEEEECCCCCCcC
Confidence 5567899999999864 5667777653 2345679999999999864
No 87
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.75 E-value=0.26 Score=50.59 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=32.3
Q ss_pred HHHHHHHhcccccCC-----CccEEEEEecccccCCCC-CCEEEEEeCCCCCCHH
Q 006073 165 GAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKD-IPMLSIIDDGHGMTHQ 213 (662)
Q Consensus 165 ~AIaELIdNA~DA~A-----t~V~I~I~~~~~~~~~~~-~~~L~I~DNG~GMt~e 213 (662)
-++.||+.||+..++ ..|.|.+... ..+ ...+.|+|||.|++.+
T Consensus 125 liv~EL~tNa~Khaf~~~~~G~I~I~~~~~-----~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 125 LIVHELVTNALKHAFLSRPGGEIRITLSRE-----GDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEEEEc-----CCCCeEEEEEEECCCCCCCC
Confidence 568999999999876 3566666531 122 3689999999998653
No 88
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.57 E-value=0.27 Score=53.76 Aligned_cols=71 Identities=17% Similarity=0.368 Sum_probs=50.3
Q ss_pred HHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCCcccccCce
Q 006073 164 FGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 164 f~AIaELIdNA~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~fGiG 240 (662)
...|-.+|.||+..+. .+|.|.+.. ....-.++|.|.|.|++++++.+.|. |-.-.++ +....|--|+|
T Consensus 344 tQVldNii~NA~KYsP~Gg~Itv~~~~------~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA--RsR~~gGTGLG 415 (459)
T COG5002 344 TQVLDNIISNALKYSPDGGRITVSVKQ------RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA--RSRKMGGTGLG 415 (459)
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEEEee------eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh--hhhcCCCCchh
Confidence 4567889999998754 566666653 23356789999999999999999885 5443332 34456767888
Q ss_pred ee
Q 006073 241 FK 242 (662)
Q Consensus 241 fK 242 (662)
+.
T Consensus 416 La 417 (459)
T COG5002 416 LA 417 (459)
T ss_pred HH
Confidence 74
No 89
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=90.49 E-value=0.26 Score=56.71 Aligned_cols=45 Identities=18% Similarity=0.380 Sum_probs=35.5
Q ss_pred HHHHHHHHHhccccc-CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 006073 163 IFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 213 (662)
Q Consensus 163 ~f~AIaELIdNA~DA-~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 213 (662)
+..++.|+|+||+.+ .++.|.|.+.. ..+.-.|.|.|||.||+++
T Consensus 470 l~~il~ell~NA~kha~a~~i~V~~~~------~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 470 LLQIAREALSNALKHAQASEVVVTVAQ------NQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCcc
Confidence 667899999999986 45678887753 2345678999999999875
No 90
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=90.24 E-value=0.52 Score=45.50 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=52.3
Q ss_pred cCHHHHHHHHHhcccccCC------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcc
Q 006073 161 GWIFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRI 234 (662)
Q Consensus 161 ~~~f~AIaELIdNA~DA~A------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~I 234 (662)
..+-.|+.|++.|++.++- ..|.|.+.. ..+...++|+|.|.|+ +++...+.-+.... +.-..
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~------~~~~~~i~i~D~G~~~--~~~~~~~~~~~~~~---~~~~~ 107 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSL------DDGKLEIRIWDQGPGI--EDLEESLGPGDTTA---EGLQE 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEE------cCCeEEEEEEeCCCCC--CCHHHhcCCCCCCC---ccccc
Confidence 3567899999999998742 345555543 3456789999999665 44555554442222 12234
Q ss_pred cccCceeeeeccccCCeEEEEEeeC
Q 006073 235 GRFGVGFKTGAMRLGKDALVLTQTA 259 (662)
Q Consensus 235 G~fGiGfKsA~~~lg~~v~V~Sk~~ 259 (662)
| |+|| ....++.+++.+.....
T Consensus 108 ~--G~Gl-~l~~~~~D~~~~~~~~~ 129 (146)
T COG2172 108 G--GLGL-FLAKRLMDEFSYERSED 129 (146)
T ss_pred c--cccH-HHHhhhheeEEEEeccC
Confidence 4 6676 44456777777774333
No 91
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=87.99 E-value=0.89 Score=51.32 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhcccccC---CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCC
Q 006073 162 WIFGAIAELVDNSRDAK---ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 226 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~---At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k 226 (662)
.+...+-.|+-||+||. |..|+|..... ..+..+|.|.|||.|-+.+-+.+.+..-+++|
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~-----~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK 626 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALGT-----EQEMLRIAIIDNGQGWPHELVDKLLTPFTTSK 626 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeecC-----cccceEEEEecCCCCCchhHHHHhcCCccccc
Confidence 36778899999999995 45566665521 34567899999999999999989887433333
No 92
>PRK13560 hypothetical protein; Provisional
Probab=87.93 E-value=0.47 Score=55.73 Aligned_cols=44 Identities=27% Similarity=0.437 Sum_probs=31.2
Q ss_pred HHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 006073 165 GAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 213 (662)
Q Consensus 165 ~AIaELIdNA~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 213 (662)
..|.+||.||+++. +..|.|.+... +.+.-.|.|.|||.||+++
T Consensus 714 ~il~NLl~NAik~~~~~~~~~~i~i~~~~~-----~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 714 LIISELLSNALKHAFPDGAAGNIKVEIREQ-----GDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHHhhccCCCCceEEEEEEEc-----CCCEEEEEEEeCCCcCCcc
Confidence 36789999999973 23455555421 2334678999999999975
No 93
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=87.27 E-value=0.71 Score=53.68 Aligned_cols=51 Identities=18% Similarity=0.347 Sum_probs=38.0
Q ss_pred HHHHHHHHhcccccCC---------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh
Q 006073 164 FGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 220 (662)
Q Consensus 164 f~AIaELIdNA~DA~A---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~ 220 (662)
-.|+..||.||.+|.+ ..+.++.+. ..+.-.+.|.|||.|.+.+..++++.
T Consensus 602 ~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~------~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 602 GQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDD------ADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHHHHHHhHHHHhhhcccccCCcceEEEEEec------CCCeEEEEEecCCCCCChHHhhhhcc
Confidence 3678899999999842 124444442 34567889999999999999999875
No 94
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=82.68 E-value=2.3 Score=46.37 Aligned_cols=72 Identities=24% Similarity=0.429 Sum_probs=47.6
Q ss_pred HHHHHhccc-ccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCceeeee-
Q 006073 167 IAELVDNSR-DAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTG- 244 (662)
Q Consensus 167 IaELIdNA~-DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGfKsA- 244 (662)
+-|-+.|-- -|||++|.|.+.. ..+.-.+.|.|||.|++..+...- +.|+|+.--
T Consensus 364 ~QEaltNIErHa~Atrv~ill~~------~~d~vql~vrDnG~GF~~~~~~~~-----------------~~GiGLRNMr 420 (459)
T COG4564 364 VQEALTNIERHAGATRVTILLQQ------MGDMVQLMVRDNGVGFSVKEALQK-----------------RHGIGLRNMR 420 (459)
T ss_pred HHHHHHHHHhhcCCeEEEEEecc------CCcceEEEEecCCCCccchhhccC-----------------ccccccccHH
Confidence 344444432 3699999999874 345678999999999988775332 148887521
Q ss_pred -cc-ccCCeEEEEEeeCCC
Q 006073 245 -AM-RLGKDALVLTQTADS 261 (662)
Q Consensus 245 -~~-~lg~~v~V~Sk~~g~ 261 (662)
-| .+|..+.|.|-..|+
T Consensus 421 ERma~~GG~~~v~s~p~GT 439 (459)
T COG4564 421 ERMAHFGGELEVESSPQGT 439 (459)
T ss_pred HHHHHhCceEEEEecCCCc
Confidence 11 357788888765554
No 95
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=79.99 E-value=2 Score=48.79 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 006073 163 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 213 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 213 (662)
....+.+|+.||+.+. +..+.|.+... ..+.-.|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~-----~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTN-----PDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEc-----CCCEEEEEEEECCcCcCCC
Confidence 4467899999999864 34566666531 1334578999999999863
No 96
>PRK13559 hypothetical protein; Provisional
Probab=79.75 E-value=1.7 Score=46.28 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 006073 163 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 213 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 213 (662)
+..++.||+.||+.+++ ..|.|.+... ...+...|.+.|||.|++++
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~----~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPS----PEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEec----CCCCeEEEEEECCCCCCCCC
Confidence 44678999999999854 3566665211 12345678899999997653
No 97
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=79.61 E-value=2.7 Score=49.21 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcccccCC---CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh
Q 006073 163 IFGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 220 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A---t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~ 220 (662)
.-..+..||.||+..+. +.|.|..+. .+...++.|.|||.|++++-+.+.|.
T Consensus 637 l~qv~~NLi~Naik~~~~e~~~i~I~~~r------~ed~~t~sV~dng~Gi~~a~~~riF~ 691 (750)
T COG4251 637 LGQVFQNLIANAIKFGGPENPDIEISAER------QEDEWTFSVRDNGIGIDPAYFERIFV 691 (750)
T ss_pred HHHHHHHHHhhheecCCCCCCceEEeeec------cCCceEEEecCCCCCcCHHHHHHHHH
Confidence 33556889999998764 567777664 45578899999999999999999875
No 98
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=69.14 E-value=8.1 Score=42.04 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcccccCCC----ccEEEEEecccc--cCCC----CCCEEEEEeCCCCCCHHHHHHHhh
Q 006073 163 IFGAIAELVDNSRDAKAT----KLEISIESIYFK--KAGK----DIPMLSIIDDGHGMTHQDVVRMTY 220 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At----~V~I~I~~~~~~--~~~~----~~~~L~I~DNG~GMt~eel~~~l~ 220 (662)
+..|+-.||.||..|.+. .-.|.+.+.... ...+ -...|.|.|||.|++.+-....|.
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~ 309 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFY 309 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccc
Confidence 567899999999999762 233333321100 0011 123467999999999887777765
No 100
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=65.79 E-value=7.1 Score=43.28 Aligned_cols=44 Identities=30% Similarity=0.447 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcccc-cCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCH
Q 006073 163 IFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 212 (662)
Q Consensus 163 ~f~AIaELIdNA~D-A~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 212 (662)
.+-..-|++.|-.. |.|+.|+|.+-. +.+.-.+.|.|||.|++.
T Consensus 411 LyRl~QE~LNNI~KHA~AS~V~i~l~~------~~e~l~Lei~DdG~Gl~~ 455 (497)
T COG3851 411 LYRLCQELLNNICKHADASAVTIQLWQ------QDERLMLEIEDDGSGLPP 455 (497)
T ss_pred HHHHHHHHHHHHHhccccceEEEEEee------CCcEEEEEEecCCcCCCC
Confidence 66778899999875 689999998873 344578999999999865
No 101
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=51.53 E-value=2.2 Score=33.15 Aligned_cols=34 Identities=24% Similarity=0.735 Sum_probs=22.6
Q ss_pred CCCCceecccchhhhhcCCC-CCC---CCCCCCceeec
Q 006073 549 KPDQEWVQCNKCRKWRMLDP-GFD---TKSLPVEWFCY 582 (662)
Q Consensus 549 ~~~~~WvQCd~C~KWR~Lp~-~~~---~~~lp~~W~C~ 582 (662)
.+...|||||.|.+|-...= +.. ...+...|+|.
T Consensus 9 ~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~ 46 (51)
T PF00628_consen 9 DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCP 46 (51)
T ss_dssp CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSH
T ss_pred CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECc
Confidence 44678999999999987652 221 12233489985
No 102
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=50.23 E-value=38 Score=41.15 Aligned_cols=45 Identities=18% Similarity=0.429 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcccc-c-C--CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH
Q 006073 163 IFGAIAELVDNSRD-A-K--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 215 (662)
Q Consensus 163 ~f~AIaELIdNA~D-A-~--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel 215 (662)
++..+-|++.||.| . + -..+.+.|+ .....+.|.+||.|++-+..
T Consensus 54 l~ki~dEilvNaadk~rd~~m~~i~v~i~--------~e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 54 LYKIFDEILVNAADKQRDPKMNTIKVTID--------KEKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred HHHHHHHHhhcccccccCCCcceeEEEEc--------cCCCEEEEEeCCCcceeeec
Confidence 45568999999998 1 2 245666665 34689999999999987654
No 103
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=48.20 E-value=23 Score=40.71 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=32.8
Q ss_pred HHHHHHhcccccCC------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 006073 166 AIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 213 (662)
Q Consensus 166 AIaELIdNA~DA~A------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 213 (662)
.|-=||.||+..|- ..|.|.+.. .+..-.+.|+|||.|+.++
T Consensus 460 ilQPLVENAIKHG~~~~~~~g~V~I~V~~------~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 460 ILQPLVENAIKHGISQLKDTGRVTISVEK------EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhhHHHHHHHHhcccchhcCCceEEEEEE------eCCeEEEEEecCCCCcCCC
Confidence 47889999998863 467777764 2345789999999999886
No 104
>PF14501 HATPase_c_5: GHKL domain
Probab=35.19 E-value=65 Score=28.30 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCC
Q 006073 163 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHG 209 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~G 209 (662)
+-..+.-|+|||++|. ...|.|.+.. ..+...|.|.....+
T Consensus 6 l~~il~nlldNAiea~~~~~~~~~I~i~~~~------~~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 6 LCRILGNLLDNAIEACKKYEDKRFISISIRE------ENGFLVIIIENSCEK 51 (100)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCC
Confidence 4467899999999983 3456666653 234455666655333
No 105
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=27.03 E-value=70 Score=36.82 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=46.2
Q ss_pred cCHHHHHHHHHhccccc-----CCCccEEEEEecccccCCCCCCEEEEEeCCC---CCCHHHHHHHhhcccCCCCC----
Q 006073 161 GWIFGAIAELVDNSRDA-----KATKLEISIESIYFKKAGKDIPMLSIIDDGH---GMTHQDVVRMTYFGHKQPDA---- 228 (662)
Q Consensus 161 ~~~f~AIaELIdNA~DA-----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~---GMt~eel~~~l~fG~s~k~~---- 228 (662)
..|..|++|+|-||+-. ....|+|.+. ...|.|.-.|. ||+++++.+- .|..+.
T Consensus 269 dyP~~alREai~NAv~HRDYs~~~~~v~I~iy----------dDRieI~NPGgl~~gi~~~~l~~~----~s~~RNp~LA 334 (467)
T COG2865 269 DYPLEALREAIINAVIHRDYSIRGRNVHIEIY----------DDRIEITNPGGLPPGITPEDLLKG----RSKSRNPVLA 334 (467)
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCceEEEEE----------CCeEEEECCCCCCCCCChhHcccC----CCcccCHHHH
Confidence 34788999999999954 2347888776 36899998786 8887776552 222111
Q ss_pred ---CCCCcccccCceee
Q 006073 229 ---DDPNRIGRFGVGFK 242 (662)
Q Consensus 229 ---~~~~~IG~fGiGfK 242 (662)
.+...|-++|-|+.
T Consensus 335 ~~l~~~~liE~~GSGi~ 351 (467)
T COG2865 335 KVLRDMGLIEERGSGIR 351 (467)
T ss_pred HHHHHhhhHHHhCccHH
Confidence 13456678888875
No 106
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=20.32 E-value=34 Score=29.09 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=13.9
Q ss_pred CCCCCceecccchhhhhcCCCCC
Q 006073 548 YKPDQEWVQCNKCRKWRMLDPGF 570 (662)
Q Consensus 548 ~~~~~~WvQCd~C~KWR~Lp~~~ 570 (662)
|..-..+|||+.|..|..+.+.+
T Consensus 23 Y~~GvViv~C~gC~~~HlIaDnL 45 (66)
T PF05180_consen 23 YHKGVVIVQCPGCKNRHLIADNL 45 (66)
T ss_dssp HHTSEEEEE-TTS--EEES--SS
T ss_pred HhCCeEEEECCCCcceeeehhhh
Confidence 33445789999999999998875
Done!