Query 006073
Match_columns 662
No_of_seqs 363 out of 2256
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:14:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3peh_A Endoplasmin homolog; st 99.9 7.2E-23 2.5E-27 212.1 9.7 171 142-323 25-227 (281)
2 3nmq_A Heat shock protein HSP 99.9 6.9E-23 2.4E-27 208.2 8.6 173 140-323 16-218 (239)
3 1y4s_A Chaperone protein HTPG; 99.9 1.4E-20 4.9E-25 211.6 22.7 173 142-323 6-209 (559)
4 3ied_A Heat shock protein; HSP 99.8 1.6E-21 5.4E-26 199.0 8.7 175 137-323 21-268 (272)
5 3t0h_A Heat shock protein HSP 99.8 1.3E-21 4.3E-26 198.0 7.0 176 137-323 6-211 (228)
6 1qy5_A Endoplasmin; GRP94, NEC 99.8 1.2E-21 4E-26 202.7 6.9 167 145-323 10-212 (269)
7 2gqp_A Endoplasmin; GRP94, HSP 99.8 3E-21 1E-25 196.2 8.3 170 142-323 11-216 (236)
8 3o0i_A HSP90AA1 protein; HSP90 99.8 4.2E-21 1.4E-25 196.9 7.4 173 140-323 37-239 (256)
9 1yc1_A HSP 86, heat shock prot 99.8 1.6E-20 5.6E-25 193.7 9.4 163 150-323 56-247 (264)
10 2wer_A ATP-dependent molecular 99.8 2E-20 6.8E-25 187.8 9.7 169 144-323 7-206 (220)
11 2cg9_A ATP-dependent molecular 99.8 1E-19 3.5E-24 207.9 12.7 171 143-324 6-207 (677)
12 2ior_A Chaperone protein HTPG; 99.8 8.4E-20 2.9E-24 185.3 8.2 170 145-323 29-229 (235)
13 2ioq_A Chaperone protein HTPG; 99.8 8.4E-20 2.9E-24 207.7 6.6 172 143-323 7-209 (624)
14 2o1u_A Endoplasmin; GRP94, HSP 99.8 1.6E-19 5.5E-24 206.2 6.5 167 145-323 27-229 (666)
15 2e61_A Zinc finger CW-type PWW 99.7 2.6E-17 9E-22 136.7 4.8 55 545-599 9-67 (69)
16 2l7p_A Histone-lysine N-methyl 99.6 1.1E-16 3.8E-21 141.6 -0.5 61 545-605 19-82 (100)
17 1b63_A MUTL; DNA mismatch repa 99.5 1.1E-13 3.9E-18 146.9 12.7 142 141-295 2-150 (333)
18 3h4l_A DNA mismatch repair pro 99.4 2.5E-13 8.7E-18 146.1 8.5 139 144-295 6-150 (367)
19 1h7s_A PMS1 protein homolog 2; 99.3 2E-12 6.8E-17 139.1 9.9 141 143-295 14-160 (365)
20 3na3_A DNA mismatch repair pro 99.3 3.7E-12 1.3E-16 136.1 9.9 140 143-295 8-154 (348)
21 3cwv_A DNA gyrase, B subunit, 99.0 9.1E-09 3.1E-13 110.8 17.2 88 162-261 30-121 (369)
22 1ei1_A DNA gyrase B, GYRB; ATP 98.9 3.7E-08 1.3E-12 106.8 20.1 98 162-273 34-146 (391)
23 3fv5_A DNA topoisomerase 4 sub 98.9 3.2E-09 1.1E-13 105.2 8.7 120 163-296 18-155 (201)
24 1kij_A DNA gyrase subunit B; t 98.8 1.7E-07 5.9E-12 101.5 18.4 88 163-260 33-135 (390)
25 1zxm_A TOPO IIA ATPase, DNA to 98.7 4E-08 1.4E-12 106.8 9.6 89 162-259 52-156 (400)
26 1s16_A Topoisomerase IV subuni 98.6 9.3E-08 3.2E-12 103.7 10.5 283 164-535 33-361 (390)
27 4duh_A DNA gyrase subunit B; s 98.6 7.1E-08 2.4E-12 97.0 8.8 121 162-297 35-172 (220)
28 4emv_A DNA topoisomerase IV, B 98.6 1.1E-07 3.8E-12 95.9 8.9 122 162-297 40-179 (226)
29 1mu5_A Type II DNA topoisomera 98.4 5.1E-07 1.8E-11 100.1 9.8 96 162-261 32-137 (471)
30 2zbk_B Type 2 DNA topoisomeras 98.3 8.7E-07 3E-11 99.6 9.5 96 162-261 31-136 (530)
31 3lnu_A Topoisomerase IV subuni 98.3 6.3E-07 2.1E-11 97.6 6.6 120 164-297 52-189 (408)
32 2q2e_B Type 2 DNA topoisomeras 98.2 1.5E-06 5E-11 99.3 6.2 131 162-297 37-181 (621)
33 3ttz_A DNA gyrase subunit B; p 98.0 1.1E-05 3.8E-10 79.7 8.2 146 162-345 31-183 (198)
34 1pvg_A DNA topoisomerase II; G 98.0 1.4E-05 4.7E-10 87.5 8.7 123 163-298 65-208 (418)
35 1id0_A PHOQ histidine kinase; 97.7 6.8E-05 2.3E-09 68.0 7.0 85 163-258 45-132 (152)
36 1bxd_A ENVZ(290-450), protein 97.5 8.6E-05 2.9E-09 68.4 5.7 87 163-258 48-137 (161)
37 2q8g_A [pyruvate dehydrogenase 97.3 0.00017 5.7E-09 77.6 5.9 90 163-258 244-350 (407)
38 2c2a_A Sensor histidine kinase 97.3 0.00019 6.5E-09 71.1 5.9 89 163-258 139-235 (258)
39 1th8_A Anti-sigma F factor; SP 97.3 0.00024 8.4E-09 64.5 5.8 81 163-257 40-125 (145)
40 3a0y_A Sensor protein; ATP-LID 97.3 0.00017 5.7E-09 65.1 4.6 82 163-257 48-135 (152)
41 1ysr_A Sensor-type histidine k 97.3 0.00035 1.2E-08 63.4 6.8 86 163-258 47-136 (150)
42 2btz_A Pyruvate dehydrogenase 97.2 0.00021 7.1E-09 76.5 5.2 90 163-258 232-337 (394)
43 2e0a_A Pyruvate dehydrogenase 97.2 0.00022 7.7E-09 76.3 5.4 90 163-258 231-337 (394)
44 3jz3_A Sensor protein QSEC; he 97.2 0.00018 6.1E-09 68.8 4.1 83 163-257 118-203 (222)
45 4ew8_A Sensor protein DIVL; si 97.2 0.00042 1.4E-08 68.6 6.6 83 163-258 156-243 (268)
46 1i58_A Chemotaxis protein CHEA 97.2 9.9E-05 3.4E-09 69.9 1.9 47 163-215 48-108 (189)
47 1y8o_A [pyruvate dehydrogenase 97.2 0.00023 7.8E-09 77.0 4.7 90 163-258 254-361 (419)
48 1gkz_A [3-methyl-2-oxobutanoat 97.1 0.00018 6.1E-09 76.7 3.0 90 163-258 239-360 (388)
49 3d36_A Sporulation kinase B; G 97.1 0.00058 2E-08 66.2 6.4 84 163-258 124-212 (244)
50 3ehg_A Sensor kinase (YOCF pro 97.1 0.00023 7.9E-09 63.5 2.8 71 163-258 41-115 (128)
51 1r62_A Nitrogen regulation pro 97.0 0.00016 5.3E-09 65.7 1.3 89 163-258 49-147 (160)
52 3sl2_A Sensor histidine kinase 97.0 0.00045 1.5E-08 64.6 4.5 92 163-259 44-140 (177)
53 1b3q_A Protein (chemotaxis pro 96.9 0.00075 2.6E-08 72.2 5.6 89 163-259 107-236 (379)
54 3ehh_A Sensor kinase (YOCF pro 96.8 0.00074 2.5E-08 64.8 4.1 71 163-258 131-205 (218)
55 3a0r_A Sensor protein; four he 96.6 0.001 3.5E-08 68.0 3.9 82 163-257 245-332 (349)
56 3zxo_A Redox sensor histidine 96.4 0.0027 9.3E-08 55.9 4.7 69 162-259 43-115 (129)
57 3zxq_A Hypoxia sensor histidin 96.1 0.0042 1.5E-07 54.3 4.0 45 163-214 40-85 (124)
58 4gfh_A DNA topoisomerase 2; to 96.0 0.015 5.3E-07 70.8 9.8 121 164-297 61-202 (1177)
59 4fpp_A Phosphotransferase; fou 93.8 0.045 1.5E-06 54.4 4.5 82 163-257 147-235 (247)
60 4gut_A Lysine-specific histone 93.3 0.0089 3E-07 70.0 -1.9 47 552-598 91-147 (776)
61 3o70_A PHD finger protein 13; 91.7 0.062 2.1E-06 44.1 1.7 33 551-583 30-63 (68)
62 3o7a_A PHD finger protein 13 v 90.6 0.065 2.2E-06 41.5 0.8 32 551-582 15-47 (52)
63 1we9_A PHD finger family prote 89.2 0.13 4.5E-06 41.1 1.6 34 550-583 18-54 (64)
64 2lv9_A Histone-lysine N-methyl 88.8 0.15 5.1E-06 44.7 1.7 33 551-583 39-72 (98)
65 3ke6_A Protein RV1364C/MT1410; 88.6 0.35 1.2E-05 51.8 4.9 47 162-213 297-348 (399)
66 1wee_A PHD finger family prote 88.2 0.21 7.3E-06 41.0 2.2 32 552-583 29-62 (72)
67 1ixm_A SPO0B, protein (sporula 78.2 0.9 3.1E-05 44.3 2.3 36 179-220 130-167 (192)
68 3kqi_A GRC5, PHD finger protei 77.8 0.38 1.3E-05 39.9 -0.5 34 550-583 21-57 (75)
69 1wep_A PHF8; structural genomi 77.1 0.21 7E-06 41.9 -2.3 34 550-583 23-59 (79)
70 2rsd_A E3 SUMO-protein ligase 71.7 1.5 5E-05 35.6 1.6 33 551-583 21-61 (68)
71 1wew_A DNA-binding family prot 70.2 0.89 3.1E-05 37.9 -0.0 34 550-583 26-68 (78)
72 2kgg_A Histone demethylase jar 69.3 1.3 4.3E-05 34.1 0.7 35 548-582 12-49 (52)
73 2ri7_A Nucleosome-remodeling f 69.3 0.67 2.3E-05 44.0 -1.1 34 550-583 19-55 (174)
74 2k16_A Transcription initiatio 69.1 0.85 2.9E-05 37.5 -0.4 32 552-583 31-64 (75)
75 2vpb_A Hpygo1, pygopus homolog 66.8 1.4 4.9E-05 35.7 0.5 19 548-566 18-37 (65)
76 1weu_A Inhibitor of growth fam 53.7 4.6 0.00016 34.9 1.4 31 552-583 47-81 (91)
77 1wem_A Death associated transc 49.1 3.6 0.00012 33.9 -0.0 33 551-583 27-66 (76)
78 1wen_A Inhibitor of growth fam 48.4 6.7 0.00023 32.2 1.5 31 552-583 27-61 (71)
79 2g6q_A Inhibitor of growth pro 39.5 6.6 0.00023 31.3 0.2 30 552-582 22-55 (62)
80 3pur_A Lysine-specific demethy 39.4 8.4 0.00029 43.1 1.0 35 549-583 53-90 (528)
81 3c6w_A P28ING5, inhibitor of g 38.6 7 0.00024 30.9 0.2 30 552-582 20-53 (59)
82 3kv5_D JMJC domain-containing 38.5 3.4 0.00012 45.9 -2.3 35 549-583 47-84 (488)
83 3lqh_A Histone-lysine N-methyl 38.1 8.1 0.00028 37.4 0.6 33 552-584 19-60 (183)
84 2jmi_A Protein YNG1, ING1 homo 36.5 13 0.00044 32.1 1.5 30 552-582 37-70 (90)
85 2xb1_A Pygopus homolog 2, B-ce 35.5 9.3 0.00032 33.6 0.5 35 549-583 14-57 (105)
86 2vnf_A ING 4, P29ING4, inhibit 29.8 12 0.00041 29.5 0.2 30 552-582 21-54 (60)
87 2ku7_A MLL1 PHD3-CYP33 RRM chi 26.9 13 0.00043 32.7 -0.2 12 554-565 2-13 (140)
88 1s16_A Topoisomerase IV subuni 26.1 2E+02 0.007 30.6 9.1 14 401-414 193-206 (390)
89 1x4i_A Inhibitor of growth pro 24.3 16 0.00054 29.8 -0.0 31 551-582 16-50 (70)
No 1
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.87 E-value=7.2e-23 Score=212.08 Aligned_cols=171 Identities=23% Similarity=0.340 Sum_probs=130.8
Q ss_pred ceeeecCH-HHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEE
Q 006073 142 KNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSII 204 (662)
Q Consensus 142 ~~~~~v~p-~~L~slsts~~~~~f~AIaELIdNA~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~ 204 (662)
...|+++- .+|..++.+.|+....+|+|||+||+||.+ ..+.|.|.. +.+...|+|.
T Consensus 25 ~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~------d~~~~tLtI~ 98 (281)
T 3peh_A 25 SHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA------NKEKNILSIT 98 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred eeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE------cCCCcEEEEE
Confidence 44566663 456667878888888999999999999964 345666653 2345799999
Q ss_pred eCCCCCCHHHHHHHh-hcccCCCC---------CCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCC
Q 006073 205 DDGHGMTHQDVVRMT-YFGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG 274 (662)
Q Consensus 205 DNG~GMt~eel~~~l-~fG~s~k~---------~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g 274 (662)
|||.||++++|.+.| .++.|.+. ..+...||+|||||++++| +|++|+|.||+.+. .++.|.+ .+
T Consensus 99 DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~~--~~~~Wes--~g 173 (281)
T 3peh_A 99 DTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNDD--EQYIWES--TA 173 (281)
T ss_dssp ECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--ET
T ss_pred eCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCCC--CEEEEEE--CC
Confidence 999999999998876 35555321 2357899999999998865 99999999999874 4777876 34
Q ss_pred CccEEEcCc---ccCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073 275 KDNLEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 323 (662)
Q Consensus 275 ~~~i~VP~~---~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~ 323 (662)
...+.|... ....+||.|+|+++++. +++.++.++. |.+||.|..+||.
T Consensus 174 ~g~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~ 227 (281)
T 3peh_A 174 DAKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIY 227 (281)
T ss_dssp TSCEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEE
T ss_pred CccEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceE
Confidence 456666433 23468999999999765 7888888875 8899999999885
No 2
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.87 E-value=6.9e-23 Score=208.15 Aligned_cols=173 Identities=22% Similarity=0.298 Sum_probs=131.8
Q ss_pred CCceeeecCH-HHHHHhhcccccCHHHHHHHHHhcccccCCC----------------ccEEEEEecccccCCCCCCEEE
Q 006073 140 LEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLS 202 (662)
Q Consensus 140 ~~~~~~~v~p-~~L~slsts~~~~~f~AIaELIdNA~DA~At----------------~V~I~I~~~~~~~~~~~~~~L~ 202 (662)
.....|+++- ++|+.++.+.|+....+|+|||+||.||.+. .+.|.|.. +.+...|+
T Consensus 16 ~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~L~ 89 (239)
T 3nmq_A 16 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP------NPQERTLT 89 (239)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEE
T ss_pred ceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------eCCccEEE
Confidence 3455666663 5677778888888999999999999999652 35666653 23467999
Q ss_pred EEeCCCCCCHHHHHHHh-hcccCCC--------CCCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecC
Q 006073 203 IIDDGHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 273 (662)
Q Consensus 203 I~DNG~GMt~eel~~~l-~fG~s~k--------~~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~ 273 (662)
|.|||.||++++|.+.+ .++.|.+ ...+...||+||+||++++| +|++|+|.||+.+. .++.|.+ .
T Consensus 90 I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s--~ 164 (239)
T 3nmq_A 90 LVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWES--S 164 (239)
T ss_dssp EEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--C
T ss_pred EEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEE--C
Confidence 99999999999997655 3444321 12357899999999998855 99999999999764 4677877 4
Q ss_pred CCccEEEcCcc--cCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073 274 GKDNLEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 323 (662)
Q Consensus 274 g~~~i~VP~~~--~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~ 323 (662)
+...+.|.... -..+||+|+|+++++. +++.++.++. |.+||.|..+||.
T Consensus 165 ~~g~fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~ 218 (239)
T 3nmq_A 165 AGGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPIT 218 (239)
T ss_dssp STTEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred CCCcEEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceE
Confidence 45577774432 3358999999999765 7888888875 8999999999885
No 3
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.86 E-value=1.4e-20 Score=211.64 Aligned_cols=173 Identities=21% Similarity=0.298 Sum_probs=131.1
Q ss_pred ceeeecCHH-HHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCCCEEEEE
Q 006073 142 KNFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSII 204 (662)
Q Consensus 142 ~~~~~v~p~-~L~slsts~~~~~f~AIaELIdNA~DA~----------------At~V~I~I~~~~~~~~~~~~~~L~I~ 204 (662)
...|++..+ .|+.++.+.|+.+..+|+|||+||+||+ ++.+.|.|.. +.+...|+|.
T Consensus 6 ~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~ 79 (559)
T 1y4s_A 6 TRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTIS 79 (559)
T ss_dssp EEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEE------ETTTTEEEEE
T ss_pred ceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEE------eCCCcEEEEE
Confidence 345777774 5677788888899999999999999998 5555555542 1234799999
Q ss_pred eCCCCCCHHHHHHHh-hcccCCCC----------CCCCCcccccCceeeeeccccCCeEEEEEeeCCC-CceeEEEeeec
Q 006073 205 DDGHGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLN 272 (662)
Q Consensus 205 DNG~GMt~eel~~~l-~fG~s~k~----------~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~-~s~~~ls~sf~ 272 (662)
|||+||+++++.+++ .+++|.+. ..+...||+||+||+++++ +|++|+|.||+.+. ...++.|.+
T Consensus 80 DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s-- 156 (559)
T 1y4s_A 80 DNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES-- 156 (559)
T ss_dssp ECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSSSCGGGEEEEEE--
T ss_pred ECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCCCCCCeeEEEEE--
Confidence 999999999998876 47766532 1256799999999987665 99999999999874 356788876
Q ss_pred CCCccEEEcCcccCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073 273 QGKDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 323 (662)
Q Consensus 273 ~g~~~i~VP~~~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~ 323 (662)
.+...+.|...+-..+||.|+|+++++. +++..+.++. |.+||.|..+||.
T Consensus 157 ~g~~~~~i~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~ 209 (559)
T 1y4s_A 157 AGEGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (559)
T ss_dssp CSSSEEEEEEECCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEE
T ss_pred eCCCeeEEeECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 3445565543334468999999998754 6677788865 8899999988874
No 4
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.84 E-value=1.6e-21 Score=199.03 Aligned_cols=175 Identities=26% Similarity=0.357 Sum_probs=127.7
Q ss_pred cCCCCceeeecCHH-HHHHhhcccccCHHHHHHHHHhcccccCC------------------------------------
Q 006073 137 AGPLEKNFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAKA------------------------------------ 179 (662)
Q Consensus 137 ~~~~~~~~~~v~p~-~L~slsts~~~~~f~AIaELIdNA~DA~A------------------------------------ 179 (662)
.++.....|+..-+ +|..+..++|+.....|+|||+||.||..
T Consensus 21 ~~~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (272)
T 3ied_A 21 GSPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVN 100 (272)
T ss_dssp TEECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------
T ss_pred ccccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHHHhccChhhhhccccccccccccccccccccccc
Confidence 33334445555553 44555667777766779999999999932
Q ss_pred ----------------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCC--------C-CCCCCc
Q 006073 180 ----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------D-ADDPNR 233 (662)
Q Consensus 180 ----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k--------~-~~~~~~ 233 (662)
..+.|.|.. +.+...|+|.|||.||++++|.+.|. ++.|.. . ..+...
T Consensus 101 ~~~~~~~~~~e~~~~~~~l~I~I~~------Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~ 174 (272)
T 3ied_A 101 ESTDKKENVEEEKNDIKKLIIKIKP------DKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNL 174 (272)
T ss_dssp -------------CGGGGCCEEEEE------ETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTC
T ss_pred cccccccccccccCCCCCcEEEEEE------eCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccc
Confidence 123455542 23467999999999999999998763 444321 1 135789
Q ss_pred ccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcCcc--------cCCCCcEEEEEecccc-hhhh
Q 006073 234 IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS--------YYRKGQFMELDTVVQS-EATA 304 (662)
Q Consensus 234 IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~--------~~~~Gt~I~l~~~~~~-e~~~ 304 (662)
|||||+||++++| +|++|+|.|| .+ ..++.|.+ .+...|.|.... ...+||+|+|+++++. +++.
T Consensus 175 IGqFGVGFySaFm-VAdkV~V~Sk-~d--d~~~~WeS--~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le 248 (272)
T 3ied_A 175 IGQFGVGFYSSFL-VSNRVEVYTK-KE--DQIYRWSS--DLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLE 248 (272)
T ss_dssp GGGSCCGGGGGGG-TEEEEEEEEE-SS--SCEEEEEE--CSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGS
T ss_pred cCcccceeheeec-cCCEEEEEEc-CC--CceEEEEE--CCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcC
Confidence 9999999998765 9999999999 32 46788887 556677774332 3468999999999865 7888
Q ss_pred hhhhhh-hhhcCCCchhhHH
Q 006073 305 KYNLKS-IKEFSPFNKYLIG 323 (662)
Q Consensus 305 ~~~L~~-I~kySpF~s~~I~ 323 (662)
++.++. |.+||.|..+||.
T Consensus 249 ~~~ik~likkys~fi~~PI~ 268 (272)
T 3ied_A 249 DYKLKELIKKYSEFIKFPIE 268 (272)
T ss_dssp HHHHHHHHHHHCTTCCSCEE
T ss_pred HHHHHHHHHHHHhCCCCCeE
Confidence 889875 8999999998885
No 5
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.84 E-value=1.3e-21 Score=198.01 Aligned_cols=176 Identities=23% Similarity=0.297 Sum_probs=131.3
Q ss_pred cCCCCceeeecCH-HHHHHhhcccccCHHHHHHHHHhcccccCCC----------------ccEEEEEecccccCCCCCC
Q 006073 137 AGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIP 199 (662)
Q Consensus 137 ~~~~~~~~~~v~p-~~L~slsts~~~~~f~AIaELIdNA~DA~At----------------~V~I~I~~~~~~~~~~~~~ 199 (662)
.+......|+++- ++|..++.+.|+.+..+|+|||+||+||+|+ .+.|.|.. +.+..
T Consensus 6 ~~~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~------d~~~~ 79 (228)
T 3t0h_A 6 EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDR 79 (228)
T ss_dssp --CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTT
T ss_pred cccccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEE------eCCee
Confidence 3344556677774 5677778888899999999999999999863 46666653 23568
Q ss_pred EEEEEeCCCCCCHHHHHHHh-hcccCCCC--------CCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEee
Q 006073 200 MLSIIDDGHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQS 270 (662)
Q Consensus 200 ~L~I~DNG~GMt~eel~~~l-~fG~s~k~--------~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~s 270 (662)
.|.|.|||.||++++|..++ .+++|... ..+...+|+||+||+++++ ++++++|.||+.+. .++.|.+
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~-vad~v~V~Sr~~~~--~~~~w~~ 156 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWES 156 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc-cCCEEEEEEecCCC--CcEEEEE
Confidence 99999999999999998765 35554321 1356799999999988755 99999999999863 4777776
Q ss_pred ecCCCccEEEcCc--ccCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073 271 LNQGKDNLEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 323 (662)
Q Consensus 271 f~~g~~~i~VP~~--~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~ 323 (662)
.+...+.|... .-..+||+|+++++.+. ++...+.+.. |.+|+.|..+||.
T Consensus 157 --~g~~~~~v~~~~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~ 211 (228)
T 3t0h_A 157 --SAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 211 (228)
T ss_dssp --CSTTEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEE
T ss_pred --cCCceEEEeecCCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeE
Confidence 34445655432 23468999999998764 5666677764 8999999998885
No 6
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.84 E-value=1.2e-21 Score=202.72 Aligned_cols=167 Identities=19% Similarity=0.318 Sum_probs=125.5
Q ss_pred eecCH-HHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEeCC
Q 006073 145 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 207 (662)
Q Consensus 145 ~~v~p-~~L~slsts~~~~~f~AIaELIdNA~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG 207 (662)
|++.- .+|+.++.+.|+....+|+|||+||+||+| ..+.|.|.. +.+...|+|.|||
T Consensus 10 Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~l~I~DnG 83 (269)
T 1qy5_A 10 FQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTG 83 (269)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred ehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE------cCCceEEEEEECC
Confidence 44443 355666777888888999999999999976 456666653 2346799999999
Q ss_pred CCCCHHHHHHHh-hcccCCCC-------------CCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecC
Q 006073 208 HGMTHQDVVRMT-YFGHKQPD-------------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 273 (662)
Q Consensus 208 ~GMt~eel~~~l-~fG~s~k~-------------~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~ 273 (662)
+||++++|.++| .++.|... ..+...||+||+||++++| ++++|+|+||+.+. .++.|.+ .
T Consensus 84 iGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~-va~~v~V~Sk~~~~--~~~~w~s--~ 158 (269)
T 1qy5_A 84 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--D 158 (269)
T ss_dssp CCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--C
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhh-ccceEEEEEEecCC--cEEEEEE--e
Confidence 999999998776 45555210 0356789999999998765 99999999999875 4677765 3
Q ss_pred CCccEEEcCcc---cCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073 274 GKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 323 (662)
Q Consensus 274 g~~~i~VP~~~---~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~ 323 (662)
+ ..+.|.... -..+||.|+|+++.+. +++..+.++. |.+||.|..+||.
T Consensus 159 g-g~~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~ 212 (269)
T 1qy5_A 159 S-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 212 (269)
T ss_dssp S-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEE
T ss_pred C-CEEEEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeE
Confidence 4 566654332 2458999999998754 6777778865 8899999999885
No 7
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.83 E-value=3e-21 Score=196.17 Aligned_cols=170 Identities=20% Similarity=0.305 Sum_probs=122.3
Q ss_pred ceeeecC-HHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEE
Q 006073 142 KNFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSII 204 (662)
Q Consensus 142 ~~~~~v~-p~~L~slsts~~~~~f~AIaELIdNA~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~ 204 (662)
+..|+++ ..+++.++.+.|+.+..+|+|||+||+||+| +.+.|.|.. +.+...|.|.
T Consensus 11 ~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~------d~~~~~i~I~ 84 (236)
T 2gqp_A 11 KFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVT 84 (236)
T ss_dssp EECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred ccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE------cCCCCEEEEE
Confidence 3456665 3456777777888899999999999999987 335555542 1235799999
Q ss_pred eCCCCCCHHHHHHHh-hcccCCCC--------C-----CCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEee
Q 006073 205 DDGHGMTHQDVVRMT-YFGHKQPD--------A-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQS 270 (662)
Q Consensus 205 DNG~GMt~eel~~~l-~fG~s~k~--------~-----~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~s 270 (662)
|||+||++++|.++| .+++|.+. . .+...||+||+||++++ .++++++|.||+.+. .++.|.+
T Consensus 85 DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f-~va~~v~V~Sr~~~~--~~~~w~~ 161 (236)
T 2gqp_A 85 DTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAF-LVADKVIVTSKHNND--TQHIWES 161 (236)
T ss_dssp ECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGG-GTEEEEEEEEECTTS--CCEEEEE
T ss_pred ECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHh-hcCCEEEEEEeCCCC--ceEEEEE
Confidence 999999999998776 46666321 0 34568999999998765 599999999999875 3677765
Q ss_pred ecCCCccEEEcCcc---cCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073 271 LNQGKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 323 (662)
Q Consensus 271 f~~g~~~i~VP~~~---~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~ 323 (662)
.+ ..+.+.... -..+||+|+++++.+. ++...+.++. |.+|++|..+||.
T Consensus 162 --~g-g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~ 216 (236)
T 2gqp_A 162 --DS-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 216 (236)
T ss_dssp --SS-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred --eC-CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceE
Confidence 34 456554322 2357999999998754 5656677754 8999999998885
No 8
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.83 E-value=4.2e-21 Score=196.89 Aligned_cols=173 Identities=23% Similarity=0.304 Sum_probs=130.3
Q ss_pred CCceeeecCH-HHHHHhhcccccCHHHHHHHHHhcccccCCC----------------ccEEEEEecccccCCCCCCEEE
Q 006073 140 LEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLS 202 (662)
Q Consensus 140 ~~~~~~~v~p-~~L~slsts~~~~~f~AIaELIdNA~DA~At----------------~V~I~I~~~~~~~~~~~~~~L~ 202 (662)
.....|+..- .++..++.+.|+....+|+|||+||+||+|+ .+.|.|.. +.+...|+
T Consensus 37 ~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~ 110 (256)
T 3o0i_A 37 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLT 110 (256)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEE
T ss_pred ceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------cCCceEEE
Confidence 3455666664 4566778888888889999999999999864 45666653 23568999
Q ss_pred EEeCCCCCCHHHHHHHh-hcccCCCC--------CCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecC
Q 006073 203 IIDDGHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 273 (662)
Q Consensus 203 I~DNG~GMt~eel~~~l-~fG~s~k~--------~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~ 273 (662)
|.|||.||++++|..++ .++.|... ..+...||+||+||+++++ ++++++|.||+.+. .++.|.+ .
T Consensus 111 I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~~--~g~~w~s--~ 185 (256)
T 3o0i_A 111 IVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWES--S 185 (256)
T ss_dssp EEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEE--C
T ss_pred EecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCCC--ceEEEEE--e
Confidence 99999999999998765 35443221 1356899999999998865 99999999999863 5778876 3
Q ss_pred CCccEEEcCc--ccCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073 274 GKDNLEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 323 (662)
Q Consensus 274 g~~~i~VP~~--~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~ 323 (662)
+...+.|... .-..+||+|+|+++.+. ++...+.++. |.+||.|..+||.
T Consensus 186 gg~~~~v~~~~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~ 239 (256)
T 3o0i_A 186 AGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 239 (256)
T ss_dssp STTEEEEEECCSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEE
T ss_pred ccceEEEeeCCCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeE
Confidence 4445665432 23458999999998754 6777777765 8999999998885
No 9
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.82 E-value=1.6e-20 Score=193.70 Aligned_cols=163 Identities=23% Similarity=0.312 Sum_probs=125.0
Q ss_pred HHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 006073 150 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 213 (662)
Q Consensus 150 ~~L~slsts~~~~~f~AIaELIdNA~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 213 (662)
.++..++...|+.+..+|+|||+||+||+| +.+.|.|.. +.+...|+|.|||+||+++
T Consensus 56 ~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~------d~~~~~I~I~DnG~GMs~e 129 (264)
T 1yc1_A 56 QLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTKA 129 (264)
T ss_dssp HHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEE------CCCeeEEEEEECCcCCCHH
Confidence 466777888888999999999999999998 778888763 2346789999999999999
Q ss_pred HHHHHh-hcccCCCC--------CCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcCcc
Q 006073 214 DVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS 284 (662)
Q Consensus 214 el~~~l-~fG~s~k~--------~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~ 284 (662)
+|..++ .+++|.+. ..+...||+||+||+++++ ++++++|.|++.+. .++.|... +...+.+....
T Consensus 130 dL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~--~~~~w~~~--~~~~~~i~~~~ 204 (264)
T 1yc1_A 130 DLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESS--AGGSFTVRTDT 204 (264)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTTS--CCEEEEEC--STTEEEEEECC
T ss_pred HHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCCC--ceEEEEEc--CCceEEEeecC
Confidence 998765 47766532 2356799999999997766 99999999999874 46777663 33345553221
Q ss_pred --cCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073 285 --YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 323 (662)
Q Consensus 285 --~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~ 323 (662)
-..+||+|+|+++.+. ++...+.+.. |.+|+.|..+||.
T Consensus 205 ~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~ 247 (264)
T 1yc1_A 205 GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 247 (264)
T ss_dssp SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEE
T ss_pred CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEE
Confidence 2357999999998654 4555666654 8899999998884
No 10
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.82 E-value=2e-20 Score=187.84 Aligned_cols=169 Identities=22% Similarity=0.287 Sum_probs=125.2
Q ss_pred eeecC-HHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEeC
Q 006073 144 FVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDD 206 (662)
Q Consensus 144 ~~~v~-p~~L~slsts~~~~~f~AIaELIdNA~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~DN 206 (662)
.|+++ ..+++.++.+.|+.+..+|+|||+||+||+| +.+.|.+.. +.+...|.|.||
T Consensus 7 ~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~------~~~~~~i~I~Dn 80 (220)
T 2wer_A 7 EFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDS 80 (220)
T ss_dssp ECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEE------EGGGTEEEEEEC
T ss_pred eeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEE------CCCCCEEEEEEc
Confidence 45555 3466777878888899999999999999987 455666653 123578999999
Q ss_pred CCCCCHHHHHHHh-hcccCCC--------CCCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCcc
Q 006073 207 GHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 277 (662)
Q Consensus 207 G~GMt~eel~~~l-~fG~s~k--------~~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~ 277 (662)
|.||++++|.+++ .+++|.+ ...+...||+||+||+++ +.+++++.|.|++.+. .++.|... +...
T Consensus 81 G~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~-~~~~~~v~v~S~~~~~--~~~~~~~~--~~~~ 155 (220)
T 2wer_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSNDD--EQYIWESN--AGGS 155 (220)
T ss_dssp SCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTTS--CCEEEEEC--SSSE
T ss_pred CCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHh-hhcCCeeEEEEecCCC--ceeEEEeC--CCCc
Confidence 9999999998775 5776542 123567999999999766 5599999999999874 36777653 3345
Q ss_pred EEEcCcc---cCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073 278 LEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 323 (662)
Q Consensus 278 i~VP~~~---~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~ 323 (662)
+.+.... -..+||+|+++++.+. ++...+.+.. |.+|+.|..+||.
T Consensus 156 ~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~ 206 (220)
T 2wer_A 156 FTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQ 206 (220)
T ss_dssp EEEEECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEE
T ss_pred eEeecccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceE
Confidence 5553322 3357999999998654 4556667754 8899999998874
No 11
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1e-19 Score=207.91 Aligned_cols=171 Identities=22% Similarity=0.279 Sum_probs=129.8
Q ss_pred eeeecC-HHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEe
Q 006073 143 NFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIID 205 (662)
Q Consensus 143 ~~~~v~-p~~L~slsts~~~~~f~AIaELIdNA~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~D 205 (662)
..|+.. ..+|+.++.+.|+....+|+|||+||+||++ ..+.|.|.. +.+...|+|.|
T Consensus 6 ~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~------d~~~~~I~I~D 79 (677)
T 2cg9_A 6 FEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRD 79 (677)
T ss_dssp EECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEE------EGGGTEEEEEE
T ss_pred eehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEE------eCCCCEEEEEE
Confidence 456777 4566777888888899999999999999973 335555542 12347899999
Q ss_pred CCCCCCHHHHHHHhh-cccCCC--------CCCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCc
Q 006073 206 DGHGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD 276 (662)
Q Consensus 206 NG~GMt~eel~~~l~-fG~s~k--------~~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~ 276 (662)
||+||++++|.++|. +++|.+ ...+...||+||+||++|+| ++++|+|.||+.+. .++.|.+ .+..
T Consensus 80 nGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~-vadkV~V~Sk~~~~--~~~~W~s--~g~~ 154 (677)
T 2cg9_A 80 SGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWES--NAGG 154 (677)
T ss_dssp CSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGG-TEEEEEEEEECTTS--CEEEEEE--CSSS
T ss_pred CCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhh-cCcEEEEEEccCCC--ceEEEEE--cCCc
Confidence 999999999988764 555532 12356799999999988755 99999999999984 4788876 4445
Q ss_pred cEEEcCc---ccCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHHH
Q 006073 277 NLEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 324 (662)
Q Consensus 277 ~i~VP~~---~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~e 324 (662)
.+.|... .-..+||.|+|+++.+. +++..+.++. |.+||.|..+||..
T Consensus 155 ~~ti~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l 207 (677)
T 2cg9_A 155 SFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQL 207 (677)
T ss_dssp EEEEEECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEE
T ss_pred eEEEeecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEE
Confidence 6665432 33458999999998754 6777888865 88899999998853
No 12
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.79 E-value=8.4e-20 Score=185.32 Aligned_cols=170 Identities=21% Similarity=0.308 Sum_probs=123.6
Q ss_pred eecC-HHHHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCCCEEEEEeCC
Q 006073 145 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 207 (662)
Q Consensus 145 ~~v~-p~~L~slsts~~~~~f~AIaELIdNA~DA~----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG 207 (662)
|+++ ..++..++...++.+..||+|||+||+||+ |+.+.|.|.. +.+...|.|.|||
T Consensus 29 f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~------~~~~~~i~I~DnG 102 (235)
T 2ior_A 29 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNG 102 (235)
T ss_dssp CCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred eehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEE------cCCceEEEEEECC
Confidence 4444 235566677777888999999999999998 5556666653 1234689999999
Q ss_pred CCCCHHHHHHHh-hcccCCCCC----------CCCCcccccCceeeeeccccCCeEEEEEeeCCCC-ceeEEEeeecCCC
Q 006073 208 HGMTHQDVVRMT-YFGHKQPDA----------DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR-SIAFLSQSLNQGK 275 (662)
Q Consensus 208 ~GMt~eel~~~l-~fG~s~k~~----------~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~-s~~~ls~sf~~g~ 275 (662)
.||++++|..++ .+++|.+.. .+...+|+||+||+++ |.++++++|.|++.+.. ..++.|... +.
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~~~~~~~~~w~~~--~~ 179 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAGEKPENGVFWESA--GE 179 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTTSCGGGEEEEEEC--SS
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCCCCCceeEEEEec--CC
Confidence 999999998765 577765310 1356899999999866 66999999999998752 457777663 33
Q ss_pred ccEEEcCcccCCCCcEEEEEecccc-hhhhhhhhh-hhhhcCCCchhhHH
Q 006073 276 DNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIG 323 (662)
Q Consensus 276 ~~i~VP~~~~~~~Gt~I~l~~~~~~-e~~~~~~L~-~I~kySpF~s~~I~ 323 (662)
..+.+....-...||.|+++++++. ++...+.+. .|.+|+.|..+||.
T Consensus 180 ~~~~i~~~~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~ 229 (235)
T 2ior_A 180 GEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 229 (235)
T ss_dssp SEEEEEEECCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEE
T ss_pred CcEEEeeCCCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeE
Confidence 4455433233458999999998654 455566665 48899999988774
No 13
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.78 E-value=8.4e-20 Score=207.67 Aligned_cols=172 Identities=22% Similarity=0.300 Sum_probs=123.6
Q ss_pred eeeecCH-HHHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCCCEEEEEe
Q 006073 143 NFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIID 205 (662)
Q Consensus 143 ~~~~v~p-~~L~slsts~~~~~f~AIaELIdNA~DA~----------------At~V~I~I~~~~~~~~~~~~~~L~I~D 205 (662)
..|++.. ..|+.++.+.|+.+..+|+|||+||+||+ |+.+.|.|.. +.+...|+|.|
T Consensus 7 ~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~D 80 (624)
T 2ioq_A 7 RGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISD 80 (624)
T ss_dssp --------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE------ETTTTEEEEEE
T ss_pred eeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE------eCCCcEEEEEE
Confidence 3455555 35677777778888899999999999998 6555566553 12357999999
Q ss_pred CCCCCCHHHHHHHh-hcccCCCC----------CCCCCcccccCceeeeeccccCCeEEEEEeeCCC-CceeEEEeeecC
Q 006073 206 DGHGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQ 273 (662)
Q Consensus 206 NG~GMt~eel~~~l-~fG~s~k~----------~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~-~s~~~ls~sf~~ 273 (662)
||+||+++++.+++ .+++|.+. ..+...||+||+||+++++ +|++|+|+||+.+. ...++.|.+ .
T Consensus 81 nGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s--~ 157 (624)
T 2ioq_A 81 NGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES--A 157 (624)
T ss_dssp CSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHH-HEEEEEEEEECTTSCGGGEEEEEE--C
T ss_pred CCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHh-cCCeEEEEECCCCCCCCeeEEEEE--e
Confidence 99999999998875 46766531 1356799999999988665 99999999999873 356888876 3
Q ss_pred CCccEEEcCcccCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073 274 GKDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 323 (662)
Q Consensus 274 g~~~i~VP~~~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~ 323 (662)
+...+.|....-..+||.|+++++++. +++..+.++. |.+||.|..+||.
T Consensus 158 g~~~~~i~~~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~ 209 (624)
T 2ioq_A 158 GEGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (624)
T ss_dssp SSSCCEEEEECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred CCCeEEEEECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 334454433333468999999998754 6777788865 8899999998874
No 14
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.77 E-value=1.6e-19 Score=206.20 Aligned_cols=167 Identities=20% Similarity=0.323 Sum_probs=110.1
Q ss_pred eecCH-HHHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCCCEEEEEeCC
Q 006073 145 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 207 (662)
Q Consensus 145 ~~v~p-~~L~slsts~~~~~f~AIaELIdNA~DA~----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG 207 (662)
|+..- ..|+.++.+.|+.+..+|+|||+||+||+ |+.+.|.|.. +.+...|+|.|||
T Consensus 27 Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnG 100 (666)
T 2o1u_A 27 FQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTG 100 (666)
T ss_dssp -------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred hHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEE------eCCCCEEEEEECC
Confidence 44443 33455566777888889999999999997 6556666653 2335799999999
Q ss_pred CCCCHHHHHHHhh-cccCCC--------CC-----CCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecC
Q 006073 208 HGMTHQDVVRMTY-FGHKQP--------DA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 273 (662)
Q Consensus 208 ~GMt~eel~~~l~-fG~s~k--------~~-----~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~ 273 (662)
+||+++++.+++. ++.|.+ .. .+...||+||+||+++++ +|++|+|.||+.+. .++.|.+ .
T Consensus 101 iGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~-vAdkV~V~Sr~~~~--~~~~W~s--~ 175 (666)
T 2o1u_A 101 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--D 175 (666)
T ss_dssp CCCCHHHHHHHTTC-------------------------------CTTGGGGG-TEEEEEEEEECTTS--CCEEEEE--S
T ss_pred CCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHH-hcCEEEEEEeeCCC--ceEEEEE--e
Confidence 9999999988763 555522 11 356789999999988754 99999999999875 3677766 3
Q ss_pred CCccEEEcCcc---cCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073 274 GKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 323 (662)
Q Consensus 274 g~~~i~VP~~~---~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~ 323 (662)
+ ..+.|.... -..+||+|+|+++++. +++..+.++. |.+||.|..+||.
T Consensus 176 g-g~~ti~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~ 229 (666)
T 2o1u_A 176 S-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 229 (666)
T ss_dssp S-SCCEEEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEE
T ss_pred C-CeEEEEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceE
Confidence 4 455553322 2358999999998754 6677788865 8899999998874
No 15
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.67 E-value=2.6e-17 Score=136.73 Aligned_cols=55 Identities=33% Similarity=0.664 Sum_probs=49.0
Q ss_pred CCCCCCCCceeccc--chhhhhcCCCCCCCCCCCCceeeccCCCC--CCCCCCcccccc
Q 006073 545 GALYKPDQEWVQCN--KCRKWRMLDPGFDTKSLPVEWFCYMKPFE--GLCDLPEQKVDA 599 (662)
Q Consensus 545 ~~~~~~~~~WvQCd--~C~KWR~Lp~~~~~~~lp~~W~C~~n~~~--~~C~~pEe~~~~ 599 (662)
+....+..+||||| +|+|||+||.++++..||++|+|+||++. ++|++|||.++.
T Consensus 9 ~~~~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 9 ISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEETWTG 67 (69)
T ss_dssp SSSCCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCSCGGGCSSSSCCCCCCC
T ss_pred CCCCCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCCCCccCCCCCCcccCCC
Confidence 34456678999999 99999999999998889999999999974 999999998874
No 16
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=1.1e-16 Score=141.56 Aligned_cols=61 Identities=18% Similarity=0.519 Sum_probs=51.2
Q ss_pred CCCCCCCCceecccchhhhhcCCCCCC-CCCCCCceeeccCCCC--CCCCCCccccccCccccc
Q 006073 545 GALYKPDQEWVQCNKCRKWRMLDPGFD-TKSLPVEWFCYMKPFE--GLCDLPEQKVDAGVVTVS 605 (662)
Q Consensus 545 ~~~~~~~~~WvQCd~C~KWR~Lp~~~~-~~~lp~~W~C~~n~~~--~~C~~pEe~~~~~~~~~~ 605 (662)
+....+..+|||||+|+|||+||.++. ...+|++|+|+||+++ ++|++|||.++..+..+.
T Consensus 19 ~~~~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~D~~~nsCs~PEE~~~~ei~~~l 82 (100)
T 2l7p_A 19 EDSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQEMSNEEINEEL 82 (100)
T ss_dssp SSCCSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSSCSSSCSTTSCCSSCHHHHHHHH
T ss_pred CCCCCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCCCCCCCCCCCccCCCHHHHHHHh
Confidence 344567899999999999999998765 3568999999999974 999999999988865543
No 17
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.48 E-value=1.1e-13 Score=146.88 Aligned_cols=142 Identities=19% Similarity=0.260 Sum_probs=102.3
Q ss_pred CceeeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHh
Q 006073 141 EKNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 219 (662)
Q Consensus 141 ~~~~~~v~p~~L~sl-sts~~~~~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l 219 (662)
+|.+..+++...+.+ +...+..+..||+|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++
T Consensus 2 ~m~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~-------~~~~~i~V~DnG~Gi~~~~l~~~~ 74 (333)
T 1b63_A 2 HMPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIER-------GGAKLIRIRDNGCGIKKDELALAL 74 (333)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGHHHHH
T ss_pred CCcceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEe-------CCceEEEEEEcCCCcCHHHHHHhh
Confidence 366888999999999 445567999999999999999999999998872 234689999999999999999987
Q ss_pred h-cccCCCCC----CCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCc-cEEEcCcccCCCCcEEE
Q 006073 220 Y-FGHKQPDA----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD-NLEIPIVSYYRKGQFME 293 (662)
Q Consensus 220 ~-fG~s~k~~----~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~-~i~VP~~~~~~~Gt~I~ 293 (662)
. |+++.... .....+|.+|+|+.+. ..++ +++|.|++.+.. .++.+ +.+|.. .+.+ .+.-..+||.|+
T Consensus 75 ~~~~tsK~~~~~d~~~~~~~G~~G~gl~si-~~vs-~l~v~s~~~~~~-~~~~~--~~~g~~~~~~~-~~~~~~~GT~V~ 148 (333)
T 1b63_A 75 ARHATSKIASLDDLEAIISLGFRGEALASI-SSVS-RLTLTSRTAEQQ-EAWQA--YAEGRDMNVTV-KPAAHPVGTTLE 148 (333)
T ss_dssp STTCCSSCCSHHHHHTCCSSCCSSCHHHHH-HTTS-EEEEEEECTTCS-SEEEE--EEETTTTEEEE-EEECCCSEEEEE
T ss_pred hcccccCccccchhhhccccCccccchhhh-hcCC-cEEEEEecCCCc-eEEEE--EEcCCcceEee-ecccCCCCCEEE
Confidence 4 65552211 0235789999999543 4466 899999998753 23332 333432 2221 112345899998
Q ss_pred EE
Q 006073 294 LD 295 (662)
Q Consensus 294 l~ 295 (662)
+.
T Consensus 149 v~ 150 (333)
T 1b63_A 149 VL 150 (333)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 18
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.5e-13 Score=146.09 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=92.3
Q ss_pred eeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-c
Q 006073 144 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 221 (662)
Q Consensus 144 ~~~v~p~~L~sl-sts~~~~~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-f 221 (662)
+-.+++..++++ +...+..+..+|.|||+||+||+|+.|.|.+. ..+...|.|.|||.||+++++..++. |
T Consensus 6 I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~-------~~~~~~i~V~DnG~Gi~~~~l~~~~~~~ 78 (367)
T 3h4l_A 6 IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFK-------DYGLESIECSDNGDGIDPSNYEFLALKH 78 (367)
T ss_dssp -------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEE-------TTTTSEEEEEECSCCCCGGGTTTTTCCE
T ss_pred ceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEE-------eCCEEEEEEEECCCCcChhHhccceecc
Confidence 678899999999 55666899999999999999999999999886 34467999999999999999988765 3
Q ss_pred ccCCC-CCCC---CCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcCcccCCCCcEEEEE
Q 006073 222 GHKQP-DADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 295 (662)
Q Consensus 222 G~s~k-~~~~---~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~~~~~Gt~I~l~ 295 (662)
.++.. ..++ ....|..|.|+. +...++ +++|.||+.+ ..++.+.. . +...+..+.+.-...||+|++.
T Consensus 79 ~tsK~~~~~Dl~~i~t~GfrGeaL~-Si~avS-~l~V~sr~~~--~~~~~~~~-~-~~G~~~~~~~~~~~~GTtV~v~ 150 (367)
T 3h4l_A 79 YTSKIAKFQDVAKVQTLGFRGEALS-SLCGIA-KLSVITTTSP--PKADKLEY-D-MVGHITSKTTTSRNKGTTVLVS 150 (367)
T ss_dssp EC---------CCCCEEEETTHHHH-HHHHSS-EEEEEEESST--TCEEEEEE-C-TTCCEEEEEEECCSSEEEEEEE
T ss_pred ccCcCCchhhhhhhhccCccchHHH-HhhccC-EEEEEEEECC--CCEEEEEE-c-CCCcEEeeccccCCCCeEEEEc
Confidence 33322 2223 345678889984 444577 6999999987 34544433 2 1223333233344689999884
No 19
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.33 E-value=2e-12 Score=139.08 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=86.4
Q ss_pred eeeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-
Q 006073 143 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY- 220 (662)
Q Consensus 143 ~~~~v~p~~L~sl-sts~~~~~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~- 220 (662)
.+..+++..++++ +...+..+..||.|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++.
T Consensus 14 ~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~-------~~~~~I~V~DnG~Gi~~~~l~~~f~~ 86 (365)
T 1h7s_A 14 AIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKD-------YGVDLIEVSDNGCGVEEENFEGLTLK 86 (365)
T ss_dssp ---------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGSGGGGC-
T ss_pred hhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCcEEEEEEECCCCcCHHHHHHHhhh
Confidence 3778999999998 445667899999999999999999999998862 2356899999999999999998764
Q ss_pred cccCCCCC-CCC---CcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcCcccCCCCcEEEEE
Q 006073 221 FGHKQPDA-DDP---NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 295 (662)
Q Consensus 221 fG~s~k~~-~~~---~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~~~~~Gt~I~l~ 295 (662)
|.++.... .+. ...|.+|+|+.+. ..++ +++|.||+.+.. .++.+. |. +...+..+.+.-..+||+|++.
T Consensus 87 ~~tsK~~~~~dl~~i~s~G~rG~gl~si-~~vs-~v~v~t~~~~~~-~~~~~~-~~-~~G~~~~~~~~~~~~GT~V~v~ 160 (365)
T 1h7s_A 87 HHTSKIQEFADLTQVETFGFRGEALSSL-CALS-DVTISTCHASAK-VGTRLM-FD-HNGKIIQKTPYPRPRGTTVSVQ 160 (365)
T ss_dssp ---------CCTTCSEEESSSSSHHHHH-HHHS-EEEEEEECTTCS-SCEEEE-EC-TTSCEEEEEECCCCSEEEEEEE
T ss_pred ccccccccccchhcccccCCCCchhhhh-hhhc-cEEEEEccCCCc-ceEEEE-Ec-CCCceEeecccCCCCCcEEEEe
Confidence 54443221 222 3478889998543 4477 999999998753 344333 32 1223333323334589999885
No 20
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.30 E-value=3.7e-12 Score=136.09 Aligned_cols=140 Identities=20% Similarity=0.293 Sum_probs=96.6
Q ss_pred eeeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhc
Q 006073 143 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYF 221 (662)
Q Consensus 143 ~~~~v~p~~L~sl-sts~~~~~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~f 221 (662)
.+..+++..++.+ +...+..+..+|.|||+||+||+|+.|.|.+.. .+...|.|.|||.||+++++..++..
T Consensus 8 ~I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~-------~~~~~I~V~DnG~GI~~~~l~~~~~~ 80 (348)
T 3na3_A 8 VIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKE-------GGLKLIQIQDNGTGIRKEDLDIVCER 80 (348)
T ss_dssp CCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGGGTTTST
T ss_pred ccccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEe-------CCEEEEEEEECCcCcChHHhhhhhcc
Confidence 3778999999999 556668999999999999999999999999862 23567999999999999999887653
Q ss_pred ccCCCC--CCC---CCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcC-cccCCCCcEEEEE
Q 006073 222 GHKQPD--ADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRKGQFMELD 295 (662)
Q Consensus 222 G~s~k~--~~~---~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~-~~~~~~Gt~I~l~ 295 (662)
.++.|. .++ ....|.+|.|+. +...++ +++|.||+.+.. .++.+. |..|. +..+. +.-..+||+|++.
T Consensus 81 ~~tsK~~~~~dl~~i~s~GfrGeaL~-Si~avs-~l~v~sr~~~~~-~~~~~~-~~~G~--~~~~~~~~~~~~GTtV~v~ 154 (348)
T 3na3_A 81 FTTSKLQSFEDLASISTYGFRGEALA-SISHVA-HVTITTKTADGK-CAYRAS-YSDGK--LKAPPKPCAGNQGTQITVE 154 (348)
T ss_dssp TCCSSCCCC---------CCTTCHHH-HHHHSS-EEEEEEECTTCS-SEEEEE-EETTE--ESSCCEEECCCSEEEEEEE
T ss_pred ccccccCcchhhhccccCCcCChHHH-Hhhccc-EEEEEEEECCCC-ceEEEE-EeCCE--EeeeeeEecCCCCcEEEEC
Confidence 333332 122 356799999994 444466 899999998863 333332 22221 11111 1224579999874
No 21
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.97 E-value=9.1e-09 Score=110.82 Aligned_cols=88 Identities=8% Similarity=0.011 Sum_probs=58.2
Q ss_pred CHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCccccc
Q 006073 162 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 237 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~f 237 (662)
-+..++.||||||+|| +|+.|.|.|.. . ..|+|.|||.||+. |+.-.+--|.+-...+.....+.-
T Consensus 30 gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~-------~--g~I~V~DnGrGIp~-e~v~~lhagsKf~~~~~~~~y~vs 99 (369)
T 3cwv_A 30 GLHHLVYFLLDVAYEEARRGECRDVVLEVGG-------D--GSIALFCTSRTVTA-ENLVRVATGAGFLGRPPGDGWGWD 99 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEEECT-------T--SCEEEEEEESSCCH-HHHHHHHTTTTGGGSSCCCSTTTT
T ss_pred hHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC-------C--CEEEEEECCCCcCH-hHeeeeecCCCcCCCccccccccc
Confidence 4678899999999998 79999999862 2 38999999999999 433222222221110000122222
Q ss_pred CceeeeeccccCCeEEEEEeeCCC
Q 006073 238 GVGFKTGAMRLGKDALVLTQTADS 261 (662)
Q Consensus 238 GiGfKsA~~~lg~~v~V~Sk~~g~ 261 (662)
| |. ++.-.++..++|.|++.+.
T Consensus 100 G-Gl-s~vnalSs~l~v~t~r~g~ 121 (369)
T 3cwv_A 100 S-ML-VVSLALSSRYQVDIWADGR 121 (369)
T ss_dssp S-SH-HHHHHTEEEEEEEEEETTE
T ss_pred C-HH-HHHHHhhceEEEEEEECCC
Confidence 5 76 4444578899999998663
No 22
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.93 E-value=3.7e-08 Score=106.83 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=69.9
Q ss_pred CHHHHHHHHHhccccc---C-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH--------HHHHhh-cccCCCCC
Q 006073 162 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDA 228 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA---~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------l~~~l~-fG~s~k~~ 228 (662)
.+...+.|||+||+|| | |+.|.|.|.. . ..|+|.|||.||+.++ +.-+|. +..+.|-.
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~-------~--g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~ 104 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA-------D--NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 104 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECT-------T--SCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSS
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC-------C--CEEEEEECCCCcccCcccccCcchHHHhheeccccCCcC
Confidence 4778899999999999 5 9999999862 2 3899999999999987 333444 32222211
Q ss_pred --CCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecC
Q 006073 229 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 273 (662)
Q Consensus 229 --~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~ 273 (662)
.-....|..|+|+. +.-.++..++|.|++++. .+.+.|..
T Consensus 105 ~~~~~vSgGl~GvGls-~vnalS~~l~v~~~r~g~----~~~~~~~~ 146 (391)
T 1ei1_A 105 DNSYKVSGGLHGVGVS-VVNALSQKLELVIQREGK----IHRQIYEH 146 (391)
T ss_dssp SSSCSSCSCCSSCHHH-HHHHTEEEEEEEEEETTE----EEEEEEET
T ss_pred CCcccccCCccccchH-HHHHhcCeEEEEEEeCCc----EEEEEEcC
Confidence 12346789999994 445588899999997662 34455543
No 23
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.88 E-value=3.2e-09 Score=105.25 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=70.0
Q ss_pred HHHHHHHHHhccccc---C-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH--------HHHhh-cccCCCCCC
Q 006073 163 IFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDAD 229 (662)
Q Consensus 163 ~f~AIaELIdNA~DA---~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel--------~~~l~-fG~s~k~~~ 229 (662)
+..+|.|||+||+|| | |+.|.|.|.. ...|+|.|||.||+.+++ ..++. ...+.|-..
T Consensus 18 ~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~---------~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~ 88 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN 88 (201)
T ss_dssp THHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--------
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEEEeC---------CCEEEEEECCCCcCcccccccCcchhheeeeeeccccCcCC
Confidence 367899999999999 5 9999998862 238999999999999883 33232 222222111
Q ss_pred C--CCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEcC-ccc--CCCCcEEEEEe
Q 006073 230 D--PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDT 296 (662)
Q Consensus 230 ~--~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~-~~~--~~~Gt~I~l~~ 296 (662)
+ ....|..|.|+. +.-.++..++|.|++++. .+.+.|..|.-.-.++. ... ...||+|++.+
T Consensus 89 ~~~~~s~GfrGegls-sinalS~~l~v~t~~~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~P 155 (201)
T 3fv5_A 89 KNYQFSGGLHGVGIS-VVNALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWP 155 (201)
T ss_dssp -------------CH-HHHHTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred CcccccCcccceecc-hhhcccceEEEEEEecCc----eEEEEEeCCEEcccceecccCCCCCCCeEEEEEE
Confidence 1 346899999994 444588899999998764 25566654422112221 122 45799998854
No 24
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.77 E-value=1.7e-07 Score=101.54 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcccccC----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHH--------Hhh-cccCCCC--
Q 006073 163 IFGAIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD-- 227 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~--------~l~-fG~s~k~-- 227 (662)
....|.|||+||+|+. ++.|.|.+.. ...|+|.|||.||+.+++.+ ++. |....+-
T Consensus 33 ~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---------~~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~ 103 (390)
T 1kij_A 33 YHHLFKEILDNAVDEALAGYATEILVRLNE---------DGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQ 103 (390)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGG
T ss_pred HHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---------CCEEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccC
Confidence 5678999999999995 8888888762 13899999999999998755 443 2111111
Q ss_pred CCCCCcccccCceeeeeccccCCeEEEEEeeCC
Q 006073 228 ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 260 (662)
Q Consensus 228 ~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g 260 (662)
.......|..|+|++ ..-.++..+.|.|++.+
T Consensus 104 ~~~~~s~G~~G~Gls-~v~als~~~~v~t~~~g 135 (390)
T 1kij_A 104 GAYKVSGGLHGVGAS-VVNALSEWTVVEVFREG 135 (390)
T ss_dssp SSCCCCSCSSTTSHH-HHHHTEEEEEEEEEETT
T ss_pred ccccccCCCCCccee-eecccccceEEEEecCC
Confidence 111235689999994 44558889999999765
No 25
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.67 E-value=4e-08 Score=106.83 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=64.6
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH--------HHHHhh-cccCCCC
Q 006073 162 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPD 227 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------l~~~l~-fG~s~k~ 227 (662)
-+...+.||||||+||+ |+.|.|.|.. . ...|+|.|||.||+.++ +.-+|. +....|-
T Consensus 52 GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~-------~-~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf 123 (400)
T 1zxm_A 52 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDP-------E-NNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNY 123 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET-------T-TTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCC
T ss_pred hHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC-------C-CCEEEEEECCCcccCccccccCccchhheeeeecccCCC
Confidence 35677999999999997 8999999872 1 26999999999999886 344444 2222221
Q ss_pred C--CCCCcccccCceeeeeccccCCeEEEEEeeC
Q 006073 228 A--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTA 259 (662)
Q Consensus 228 ~--~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~ 259 (662)
. .-....|..|+|. ++.-.|+..++|.++..
T Consensus 124 ~~~~ykvSgGlhGvGl-svVnAlS~~l~v~v~~~ 156 (400)
T 1zxm_A 124 DDDEKKVTGGRNGYGA-KLCNIFSTKFTVETASR 156 (400)
T ss_dssp CGGGCCCCSCCSSCHH-HHHHHTEEEEEEEEEET
T ss_pred CCCcccccCCccccce-eeeEEeccceEEEEecC
Confidence 1 1234779999999 45555889999999874
No 26
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.61 E-value=9.3e-08 Score=103.66 Aligned_cols=283 Identities=14% Similarity=0.058 Sum_probs=158.0
Q ss_pred HHHHHHHHhccccc---C-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH--------HHHHhh-cccCCCCC--
Q 006073 164 FGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDA-- 228 (662)
Q Consensus 164 f~AIaELIdNA~DA---~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------l~~~l~-fG~s~k~~-- 228 (662)
..++.|||+||+|| | |+.|.|.|.. . ..|+|.|||.||+.++ +..+|. +....|-.
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~-------~--g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~ 103 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHA-------D--QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK 103 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT-------T--SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEec-------C--CEEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCC
Confidence 56799999999999 5 9999999862 2 3899999999999988 555554 22222211
Q ss_pred CCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCccEEEc-CcccC--CCCcEEEEEecccchhhhh
Q 006073 229 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYY--RKGQFMELDTVVQSEATAK 305 (662)
Q Consensus 229 ~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP-~~~~~--~~Gt~I~l~~~~~~e~~~~ 305 (662)
.-....|..|+|+. +.-.++..++|.|++++. .+.+.|..|.-.-.+. +.... ..||+|++.+..+. +
T Consensus 104 ~~~~sgGl~GvGls-~vnalS~~l~v~~~r~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~Pd~~~-F--- 174 (390)
T 1s16_A 104 NYQFSGGLHGVGIS-VVNALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF-F--- 174 (390)
T ss_dssp SCSSCSCCSSCHHH-HHHHTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEECGGG-S---
T ss_pred cccccCCccccchH-HHHHhhcccEEEEEECCc----EEEEEEeCCcccccceecccccCCCCceEEEEEECccc-c---
Confidence 12346789999994 445588899999997652 3556665442111111 22333 57999987643221 1
Q ss_pred hhhhhhhhcCCCchhhHHHhhccccCCCCCcEEEEEeccCCCCceeeeccCCCCCCCCCCcCCeeeecccccCCCCcccc
Q 006073 306 YNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQ 385 (662)
Q Consensus 306 ~~L~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~NL~r~~~~~eLdF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~ 385 (662)
+-..|....|.+.+..+.--..|.+|.+.+-+. +.+..|.
T Consensus 175 -------~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~---~~~~~f~------------------------------ 214 (390)
T 1s16_A 175 -------DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN---NTEQRWC------------------------------ 214 (390)
T ss_dssp -------SCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT---TEEEEEC------------------------------
T ss_pred -------CcccccHHHHHHHHHHHHhcCCCcEEEEEeCCC---ceeEEEE------------------------------
Confidence 001121112222222222124688887765531 0011111
Q ss_pred cCcchhhHHHHHhhhhcCCC-e---EEEEcCeEeccchhhcccccceeecccccceEEEEEEcccccccccccceEEEEE
Q 006073 386 KVPLDYSLRSYLEVIFLVPR-M---KIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYW 461 (662)
Q Consensus 386 ~~~~~ySLRaYlsiLYL~Pr-m---~I~LnG~kV~~~~i~~~L~~~~v~~~~~~~~~V~it~G~~~~e~~~~~~Gi~vY~ 461 (662)
+.-.|++|+..|+=... + -|++.| +..+..|++.+..... .....++.|.
T Consensus 215 ---~~gGl~~~v~~l~~~~~~~~~~~i~~~~--------------------~~~~~~ve~a~~~~~~---~~~~~~~sFv 268 (390)
T 1s16_A 215 ---YQDGLNDYLAEAVNGLPTLPEKPFIGNF--------------------AGDTEAVDWALLWLPE---GGELLTESYV 268 (390)
T ss_dssp ---CSSCHHHHHHHHHTTSCCEEEEEEEEEE--------------------ECSSEEEEEEEEECTT---CCCCCEEEEE
T ss_pred ---cCCcHHHHHHHHhCCCcccCCCcEEEEE--------------------eeCCEEEEEEEEeccC---CCCceEEEEE
Confidence 11157788887653211 1 111111 1112345555555211 1234688999
Q ss_pred eCeeeeee-eec------------------c--c---cccCCCCCceEEEEEecCcccccCCCccccccCccCccCchHH
Q 006073 462 HGRLIEAY-KRV------------------G--G---MIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPY 517 (662)
Q Consensus 462 nnRLI~~~-~kV------------------g--~---q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y 517 (662)
|||-+.-+ -.+ + . .+.+..--.|+..||.+. +++| .|+ ..+|.-.-.+...
T Consensus 269 N~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k~~~~l~~~dvregl~avisvk--i~~P--~Fe-gQTK~kL~~~e~~ 343 (390)
T 1s16_A 269 NLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVK--MQDP--QFA-GQTKERLSSRQCA 343 (390)
T ss_dssp TTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTCCCCHHHHHTTEEEEEEEE--ESSC--CBS-STTCCCBCCTHHH
T ss_pred CCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCccCCccCHHHHhhccEEEEEee--cCCC--Ccc-ccccchhcChhHH
Confidence 99988642 000 0 0 011111123888888773 3332 232 5677777777777
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 006073 518 ARLEEWLGKVADEYWDNK 535 (662)
Q Consensus 518 ~~L~~~L~e~~~eYW~~~ 535 (662)
.-.+..+.+.+..|..++
T Consensus 344 ~~v~~~v~~~l~~~l~~n 361 (390)
T 1s16_A 344 AFVSGVVKDAFILWLNQN 361 (390)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 788889999999888654
No 27
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.61 E-value=7.1e-08 Score=96.98 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=75.8
Q ss_pred CHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH--------HHHhh-cccCCCCC
Q 006073 162 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDA 228 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel--------~~~l~-fG~s~k~~ 228 (662)
.+..++.|||+||+|+ +|+.|.|.|.. ...|+|.|||.||+.+.. .-+|. +-...|-.
T Consensus 35 gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---------~g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd 105 (220)
T 4duh_A 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCC
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---------CCcEEEEECCcCcccccccccCcchhhheeeecccCCCcC
Confidence 4678899999999999 89999999862 247999999999999863 22332 21222211
Q ss_pred --CCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCc--cEEEcCcccCCCCcEEEEEec
Q 006073 229 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLEIPIVSYYRKGQFMELDTV 297 (662)
Q Consensus 229 --~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~--~i~VP~~~~~~~Gt~I~l~~~ 297 (662)
.-...-|..|+|. ++.-.|+..+.|.+++++. .+.+.|..|.- .+.+ +..-...||+|++.+.
T Consensus 106 ~~~yk~SgGlhGvG~-svvNAlS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~-~g~~~~~GT~V~F~Pd 172 (220)
T 4duh_A 106 DNSYKVSGGLHGVGV-SVVNALSQKLELVIQREGK----IHRQIYEHGVPQAPLAV-TGETEKTGTMVRFWPS 172 (220)
T ss_dssp TTC--------CCCH-HHHHHTEEEEEEEEEETTE----EEEEEEETTEESSSCEE-EEECSCCEEEEEEEEC
T ss_pred CCccccccCccceec-chhcccccceEEEEEECCE----EEEEEecCCcCcCCcee-ccccCCCCcEEEEEEC
Confidence 1245779999999 4445588999999998773 34566654321 1111 1122467999987653
No 28
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.57 E-value=1.1e-07 Score=95.94 Aligned_cols=122 Identities=20% Similarity=0.181 Sum_probs=77.8
Q ss_pred CHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH-------HHHHhh-cccCCCCC-
Q 006073 162 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD-------VVRMTY-FGHKQPDA- 228 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee-------l~~~l~-fG~s~k~~- 228 (662)
-+...+.|||+||+|+ .++.|.|.|.. ...++|.|||.||+.+. +.-+|. +-.+.|-.
T Consensus 40 gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~---------~g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~ 110 (226)
T 4emv_A 40 GLHHLVWEIVDNAVDEALSGFGDRIDVTINK---------DGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQ 110 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC-------
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC---------CCeEEEEEcCCCccccccccCceehheeEEeecccCccCc
Confidence 3567899999999999 88999988762 24899999999999987 554454 22222211
Q ss_pred -CCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCC-Cc--cEE-EcCcccCCCCcEEEEEec
Q 006073 229 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-KD--NLE-IPIVSYYRKGQFMELDTV 297 (662)
Q Consensus 229 -~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g-~~--~i~-VP~~~~~~~Gt~I~l~~~ 297 (662)
.-...-|..|+|. ++.-.|+..+.|.+++++. .+.+.|..| .. .+. +....-...||+|++.+.
T Consensus 111 ~~yk~SgGlhGvG~-svvNALS~~l~v~v~r~g~----~~~q~f~~Gg~~~~~l~~ig~~~~~~~GT~V~F~PD 179 (226)
T 4emv_A 111 GGYKTSGGLHGVGS-SVVNALSSWLEVEITRDGA----VYKQRFENGGKPVTTLKKIGTALKSKTGTKVTFMPD 179 (226)
T ss_dssp -------CGGGCCH-HHHHHTEEEEEEEEEETTE----EEEEEEETTTEESSCSEEEEECCTTCCEEEEEEEEC
T ss_pred cceEeccccccccc-hhhhhcccceEEEEEeCCc----EEEEEECCCCEEcCCceEecccCCCCCCeEEEEEEC
Confidence 1245779999999 4555689999999998774 345666544 21 111 111111457999987654
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.41 E-value=5.1e-07 Score=100.10 Aligned_cols=96 Identities=22% Similarity=0.342 Sum_probs=67.4
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCCccc
Q 006073 162 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 235 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG 235 (662)
.+..+|.|||+||+||++. .|.|.+.... ...+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~---~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 107 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLID---DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 107 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEE---TTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECC---CcCcEEEEEEEECCCCCCHHHHHHHhccccccccc-ccccCCC
Confidence 4678999999999999876 6777776310 012356799999999999999999875 4333332 1234568
Q ss_pred ccCceeeeecc---ccCCe-EEEEEeeCCC
Q 006073 236 RFGVGFKTGAM---RLGKD-ALVLTQTADS 261 (662)
Q Consensus 236 ~fGiGfKsA~~---~lg~~-v~V~Sk~~g~ 261 (662)
..|+|+..+.. ..|.. +.|.|+..+.
T Consensus 108 g~GLGL~iv~~l~~~~gG~~i~v~S~~~~g 137 (471)
T 1mu5_A 108 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 137 (471)
T ss_dssp SCTTTHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CceeeHHHHHHHHHHhCCCceeEEEecCCC
Confidence 89999964432 23444 9999987764
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.34 E-value=8.7e-07 Score=99.60 Aligned_cols=96 Identities=22% Similarity=0.342 Sum_probs=68.4
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCCccc
Q 006073 162 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 235 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG 235 (662)
.+..+|.|||+||+||++. .|.|.+.... ...+...|+|.|||.||+.+++..++. |....+. ......|
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~---~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 106 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLID---DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 106 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEE---TTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECC---CcCceEEEEEEECCCCCCHHHHHHHhccccccCCc-ccccCCC
Confidence 4678899999999999887 7888886410 012356799999999999999998875 4333332 1235678
Q ss_pred ccCceeeeecc---ccCCe-EEEEEeeCCC
Q 006073 236 RFGVGFKTGAM---RLGKD-ALVLTQTADS 261 (662)
Q Consensus 236 ~fGiGfKsA~~---~lg~~-v~V~Sk~~g~ 261 (662)
..|+|+..+.. ..|.. +.|.|+..+.
T Consensus 107 g~GLGLsiv~~l~~~~gG~~I~V~S~~~~g 136 (530)
T 2zbk_B 107 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 136 (530)
T ss_dssp SSSSHHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CccchHHHHHHHHHHhCCCceEEEEecCCC
Confidence 89999964432 23444 9999987664
No 31
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.29 E-value=6.3e-07 Score=97.59 Aligned_cols=120 Identities=19% Similarity=0.178 Sum_probs=70.1
Q ss_pred HHHHHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH--------HHHhh-cccCCCC--C
Q 006073 164 FGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPD--A 228 (662)
Q Consensus 164 f~AIaELIdNA~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel--------~~~l~-fG~s~k~--~ 228 (662)
...+.||||||+|+ .|+.|.|.|.. ...|+|.|||.||+.+.. .-+|. +-...|- .
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~---------dgsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~ 122 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYK---------DGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNR 122 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC---------
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeC---------CCeEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCC
Confidence 45699999999999 89999998862 248999999999998763 23343 1111121 1
Q ss_pred CCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCc--cEE-EcCcccCCCCcEEEEEec
Q 006073 229 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE-IPIVSYYRKGQFMELDTV 297 (662)
Q Consensus 229 ~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~--~i~-VP~~~~~~~Gt~I~l~~~ 297 (662)
.-...-|..|+|. ++.-.|+..+.|.+++++. .+.+.|..|.. .+. +-...-...||+|+..+.
T Consensus 123 ~ykvSgGlhGvG~-svVNALS~~l~v~v~rdGk----~~~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD 189 (408)
T 3lnu_A 123 NYTFSGGLHGVGV-SVVNALSTKVELFIKREGS----EHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWAD 189 (408)
T ss_dssp -----------CH-HHHHHTEEEEEEEEEETTE----EEEEEEETTEECSCCEEEEECCTTCCEEEEEEEEC
T ss_pred ceeecCCcccccc-ceehhccCeEEEEEEECCE----EEEEEECCCEECCCceEeccCcCCCCCcEEEEEEC
Confidence 1235678999999 4555689999999998774 35566654321 111 111111357999987654
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.16 E-value=1.5e-06 Score=99.35 Aligned_cols=131 Identities=16% Similarity=0.265 Sum_probs=77.2
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhh-cccCCCCCCCCCccc
Q 006073 162 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 235 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG 235 (662)
.+..+|.|||+||+||+++ .|.|.+... +.+...|+|.|||.||+.+++.+++. |..+.+-.......|
T Consensus 37 ~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~-----~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~G 111 (621)
T 2q2e_B 37 SLITTVKEAVDNALDACEEAGILPDILVQVERT-----GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRG 111 (621)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-----TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-----CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCC
Confidence 4567899999999999875 677766531 11345799999999999999999875 322222111124458
Q ss_pred ccCceeeeecc---ccC-CeEEEEEeeCCCCceeEEEeee--cCCCccE--EEcCcccCCCCcEEEEEec
Q 006073 236 RFGVGFKTGAM---RLG-KDALVLTQTADSRSIAFLSQSL--NQGKDNL--EIPIVSYYRKGQFMELDTV 297 (662)
Q Consensus 236 ~fGiGfKsA~~---~lg-~~v~V~Sk~~g~~s~~~ls~sf--~~g~~~i--~VP~~~~~~~Gt~I~l~~~ 297 (662)
..|+|+..+.. .++ ..+.|.|+..+......+...+ ..+.... .-+.+.-..+||.|++.++
T Consensus 112 g~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~f~ 181 (621)
T 2q2e_B 112 QQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELEMR 181 (621)
T ss_dssp SSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEECS
T ss_pred CceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEEec
Confidence 89999964322 223 3378999877632222222222 1222111 1111222347999988754
No 33
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.00 E-value=1.1e-05 Score=79.72 Aligned_cols=146 Identities=19% Similarity=0.226 Sum_probs=83.0
Q ss_pred CHHHHHHHHHhccccc---C-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCccccc
Q 006073 162 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 237 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA---~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~f 237 (662)
-+...+.|||+||+|+ | |+.|.|.|.. ...++|.|||.||+.+.-. .+ +. .....+ |
T Consensus 31 gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~---------~g~i~V~DnG~Gip~~~h~------~~-~~-~~~e~i--~ 91 (198)
T 3ttz_A 31 GLHHLVWEIVDNSIDEALAGYANQIEVVIEK---------DNWIKVTDNGRGIPVDIQE------KM-GR-PAVEVI--L 91 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEG---------GGEEEEEECSSCCCCSBCT------TT-SS-BHHHHH--H
T ss_pred chHHHHHHHHHHHHhHHhcCCCcEEEEEEeC---------CCeEEEEECCCCccccccC------cC-CC-cccccc--c
Confidence 3667899999999994 7 9999999873 2389999999999986210 00 00 000111 2
Q ss_pred CceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCc--cE-EEcCcccCCCCcEEEEEecccchhhhhhhhhhhhhc
Q 006073 238 GVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-EIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEF 314 (662)
Q Consensus 238 GiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~--~i-~VP~~~~~~~Gt~I~l~~~~~~e~~~~~~L~~I~ky 314 (662)
+ . ++.-.|+..+.|.+++++. .+.+.|..|.- .. .++ .....||+|++....+. ++ +-
T Consensus 92 t--~-SvVNALS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~i~--~~~~~GT~V~F~Pd~~i-F~---------~~ 152 (198)
T 3ttz_A 92 T--S-SVVNALSQDLEVYVHRNET----IYHQAYKKGVPQFDLKEVG--TTDKTGTVIRFKADGEI-FT---------ET 152 (198)
T ss_dssp H--T-CHHHHTEEEEEEEEEETTE----EEEEEEETTEESSCCEEEE--ECSCCEEEEEEEECTTT-CC---------SC
T ss_pred e--e-EehhhhcCeEEEEEEECCc----EEEEEEeCCEECCCceecc--CCCCCCcEEEEEECHHH-hc---------cC
Confidence 2 1 3333577899999998874 35566644321 11 122 23468999987643221 10 11
Q ss_pred CCCchhhHHHhhccccCCCCCcEEEEEeccC
Q 006073 315 SPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 345 (662)
Q Consensus 315 SpF~s~~I~e~~~~~~~~~~GT~IiI~NL~r 345 (662)
.-|...-|...+..+.--..|.+|.+.+-+.
T Consensus 153 ~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 183 (198)
T 3ttz_A 153 TVYNYETLQQRIRELAFLNKGIQITLRDERD 183 (198)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTCEEEEEECSS
T ss_pred CccCHHHHHHHHHHHhhcCCCCEEEEEeecC
Confidence 1122222222222222125799999987653
No 34
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.95 E-value=1.4e-05 Score=87.46 Aligned_cols=123 Identities=16% Similarity=0.223 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHH--------Hhh-c--ccCCC
Q 006073 163 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-F--GHKQP 226 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~--------~l~-f--G~s~k 226 (662)
+.-.+.|+|+||+|+. ++.|.|.|.. +...++|.|||.||+.+.... .|. + |.+-.
T Consensus 65 L~~lv~EivdNaiDe~~~~g~~~~I~V~i~~--------d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd 136 (418)
T 1pvg_A 65 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD 136 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCC
T ss_pred HHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC--------CCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccC
Confidence 4456999999999975 7899999873 226899999999998765322 333 1 22211
Q ss_pred CCCCCCcccccCceeeeeccccCCeEEEEEee--CCCCceeEEEeeecCCCccEEEc-Cccc--CCCCcEEEEEecc
Q 006073 227 DADDPNRIGRFGVGFKTGAMRLGKDALVLTQT--ADSRSIAFLSQSLNQGKDNLEIP-IVSY--YRKGQFMELDTVV 298 (662)
Q Consensus 227 ~~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~--~g~~s~~~ls~sf~~g~~~i~VP-~~~~--~~~Gt~I~l~~~~ 298 (662)
...-.-.-|..|+|. ++.-.|+..+.|.+++ ++. .+.++|..|.....-| +... ...||+|+..++.
T Consensus 137 ~~~ykvSGGLhGVG~-SvVNALS~~l~V~v~r~rdGk----~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~PD~ 208 (418)
T 1pvg_A 137 DDEKKVTGGRNGYGA-KLCNIFSTEFILETADLNVGQ----KYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDL 208 (418)
T ss_dssp TTSCCCCSCCSSCHH-HHHHHTEEEEEEEEEETTTTE----EEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECG
T ss_pred CCceeccCCccceee-eeeeeccceEEEEEEECCCCc----EEEEEEEcCCCccCCCeecccCCCCCceEEEEEECh
Confidence 111234679999999 5556689999999985 342 3556665432111111 1111 3579998876543
No 35
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.66 E-value=6.8e-05 Score=68.00 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCceee
Q 006073 163 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 242 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGfK 242 (662)
+..++.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+++.-..+.+.. .+..|+|+.
T Consensus 45 l~~il~nLl~NAi~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~-----~~g~GlGL~ 113 (152)
T 1id0_A 45 FVEVMGNVLDNACKYCLEFVEISARQ------TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL-----RPGQGVGLA 113 (152)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEEE------CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-----CTTCCSCHH
T ss_pred HHHHHHHHHHHHHHhCcCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-----CCCcccCHH
Confidence 45679999999999987777777653 3445689999999999999998887643332211 135688875
Q ss_pred eec---cccCCeEEEEEee
Q 006073 243 TGA---MRLGKDALVLTQT 258 (662)
Q Consensus 243 sA~---~~lg~~v~V~Sk~ 258 (662)
.+- -.+|.++.+.+..
T Consensus 114 i~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 114 VAREITEQYEGKIVAGESM 132 (152)
T ss_dssp HHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHcCCEEEEEeCC
Confidence 332 2356667666643
No 36
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.53 E-value=8.6e-05 Score=68.37 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCceee
Q 006073 163 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 242 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGfK 242 (662)
+..+|.+||+||+.+....|.|.+.. ..+...|.|.|||.||+.+++.+++...++.+.. ...+..|+|+.
T Consensus 48 l~~il~nll~NAik~~~~~I~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~---~~~~g~GlGL~ 118 (161)
T 1bxd_A 48 IKRAVANMVVNAARYGNGWIKVSSGT------EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA---RTISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEEEE------ETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC---CCCCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC---CCCCCcccCHH
Confidence 45679999999999988888888764 2345679999999999999988887533332211 11245788886
Q ss_pred eec---cccCCeEEEEEee
Q 006073 243 TGA---MRLGKDALVLTQT 258 (662)
Q Consensus 243 sA~---~~lg~~v~V~Sk~ 258 (662)
.+- -.+|..+.+.+..
T Consensus 119 i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 119 IVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp TTHHHHHHHTSEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 432 1356777776653
No 37
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.34 E-value=0.00017 Score=77.60 Aligned_cols=90 Identities=14% Similarity=0.269 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCC----
Q 006073 163 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 229 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~---- 229 (662)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+...
T Consensus 244 L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~ 317 (407)
T 2q8g_A 244 LYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL------GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVET 317 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccc
Confidence 44569999999999843 268887764 34456799999999999999999987544433210
Q ss_pred -CCCcccccCceeeeec---cccCCeEEEEEee
Q 006073 230 -DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 230 -~~~~IG~fGiGfKsA~---~~lg~~v~V~Sk~ 258 (662)
.....+.+|+|+..+- -..|.++.|.|..
T Consensus 318 ~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~ 350 (407)
T 2q8g_A 318 SRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLE 350 (407)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcC
Confidence 1234567899985332 2457777777754
No 38
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.34 E-value=0.00019 Score=71.06 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCccccc
Q 006073 163 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 237 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~f 237 (662)
+..+|..||+||+++... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.++.+.. .....+..
T Consensus 139 l~~il~NLl~NAik~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~ 211 (258)
T 2c2a_A 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDE------KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS-LTYEVPGT 211 (258)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE------ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC----------C
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEEEEec------CCCeEEEEEEecCCCCCHHHHHhhccccccCCCC-CCCCCCCc
Confidence 446789999999998532 35665543 2345678999999999999999887633322211 11122346
Q ss_pred Cceeeeec---cccCCeEEEEEee
Q 006073 238 GVGFKTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 238 GiGfKsA~---~~lg~~v~V~Sk~ 258 (662)
|+|+..+- -..|..+.|.|..
T Consensus 212 GLGL~i~~~iv~~~gG~i~v~s~~ 235 (258)
T 2c2a_A 212 GLGLAITKEIVELHGGRIWVESEV 235 (258)
T ss_dssp CCTHHHHHHHHHHTTCEEEEEEET
T ss_pred chHHHHHHHHHHHcCCEEEEEecC
Confidence 88875332 2457777777754
No 39
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.31 E-value=0.00024 Score=64.51 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCccccc
Q 006073 163 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 237 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~f 237 (662)
+..+|.|||+||+.++. ..|.|.+.. ..+.-.|.|.|||.||+ ++.+.+.-.++.+. ..+..
T Consensus 40 l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~-----~~~~~ 106 (145)
T 1th8_A 40 IKTVVSEAVTNAIIHGYNNDPNGIVSISVII------EDGVVHLTVRDEGVGIP--DIEEARQPLFTTKP-----ELERS 106 (145)
T ss_dssp HHHHHHHHHHHHHHTTSTTCTTSEEEEEEEE------ETTEEEEEEEECSSCCS--CHHHHTCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------eCCEEEEEEEECCCCcC--hHHHhhcccccCCC-----CCCCC
Confidence 56789999999998863 556666653 23456799999999999 66676653332221 11345
Q ss_pred CceeeeeccccCCeEEEEEe
Q 006073 238 GVGFKTGAMRLGKDALVLTQ 257 (662)
Q Consensus 238 GiGfKsA~~~lg~~v~V~Sk 257 (662)
|+|+..+. ++.+.+.+.+.
T Consensus 107 GlGL~iv~-~~~~~i~~~~~ 125 (145)
T 1th8_A 107 GMGFTIME-NFMDEVIVESE 125 (145)
T ss_dssp SCHHHHHH-HHSSEEEEEEE
T ss_pred cchHHHHH-HHHheEEEEeC
Confidence 88885432 34446655554
No 40
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.31 E-value=0.00017 Score=65.08 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
+..++.+||+||+.+. ...|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+ -+..|+|
T Consensus 48 l~~il~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~-------~~g~GlG 114 (152)
T 3a0y_A 48 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK-------TQGTGLG 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEE------CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC---------CCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC-------CCCCCcC
Confidence 4567899999999985 4566666653 33456789999999999999988875433322 1346888
Q ss_pred eeeec--c--ccCCeEEEEEe
Q 006073 241 FKTGA--M--RLGKDALVLTQ 257 (662)
Q Consensus 241 fKsA~--~--~lg~~v~V~Sk 257 (662)
+..+- + ..|..+.+.+.
T Consensus 115 L~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 115 LSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp HHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCcEEEEecC
Confidence 86432 2 45777776664
No 41
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.31 E-value=0.00035 Score=63.36 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcccccCCC-ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCcee
Q 006073 163 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 241 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At-~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGf 241 (662)
+..++.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+.+++.+++.-.+.... ...+..|+|+
T Consensus 47 l~~il~nLl~NA~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~----~~~~g~GlGL 116 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHGGATLVQLSAVS------SRAGVEIAIDDNGSGVPEGERQVVFERFSRGST----ASHSGSGLGL 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEEE------ETTEEEEEEEESSSCCCGGGHHHHHTSCC---------------CCC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCCCCHHHHHHHhcccccCCC----CCCCCCCcCH
Confidence 446799999999998643 55555543 234567999999999999999998763332111 1123468887
Q ss_pred eeec---cccCCeEEEEEee
Q 006073 242 KTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 242 KsA~---~~lg~~v~V~Sk~ 258 (662)
..+- -.+|..+.+.+..
T Consensus 117 ~i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 117 ALVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp HHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHcCCEEEEeecC
Confidence 5332 2356667666643
No 42
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.24 E-value=0.00021 Score=76.46 Aligned_cols=90 Identities=14% Similarity=0.288 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCC----
Q 006073 163 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 229 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~---- 229 (662)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 232 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~ 305 (394)
T 2btz_A 232 LYHMLFELFKNAMRATVESHESSLILPPIKVMVAL------GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGT 305 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe------CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCccc
Confidence 44569999999999842 258888764 34456799999999999999999987544433210
Q ss_pred CCCcccccCceeeeec---cccCCeEEEEEee
Q 006073 230 DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 230 ~~~~IG~fGiGfKsA~---~~lg~~v~V~Sk~ 258 (662)
.....+.+|+|+..+- -.+|.++.|.|..
T Consensus 306 ~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2btz_A 306 GGTPLAGFGYGLPISRLYAKYFQGDLQLFSME 337 (394)
T ss_dssp --------CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 1233466889985332 2457777777753
No 43
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.23 E-value=0.00022 Score=76.30 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCC----
Q 006073 163 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 229 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~---- 229 (662)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 231 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~ 304 (394)
T 2e0a_A 231 LHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL------GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDN 304 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE------CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC----
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe------CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCc
Confidence 44568999999999843 258888764 34456899999999999999999987544433210
Q ss_pred -CCCcccccCceeeeec---cccCCeEEEEEee
Q 006073 230 -DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 230 -~~~~IG~fGiGfKsA~---~~lg~~v~V~Sk~ 258 (662)
.....+.+|+|+..+- -..|.++.|.|..
T Consensus 305 ~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 305 SRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp --CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 1234466899985332 2457777777754
No 44
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.23 E-value=0.00018 Score=68.82 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCceee
Q 006073 163 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 242 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGfK 242 (662)
+..+|.+||+||+.+......|.+... ...|.|.|||.||+++++.+++.-.++.+. ...+..|+|+.
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~--------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLN--------ADNFIVRDNGPGVTPEALARIGERFYRPPG----QTATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEEC--------SSEEEEECSCC------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEc--------cCeEEEEECCCCCCHHHHHHHHhhhccCCC----CCCCcccccHH
Confidence 446799999999999765544555431 122999999999999999888763333221 12234688875
Q ss_pred eec---cccCCeEEEEEe
Q 006073 243 TGA---MRLGKDALVLTQ 257 (662)
Q Consensus 243 sA~---~~lg~~v~V~Sk 257 (662)
.+- -.+|.++.|.|.
T Consensus 186 i~~~i~~~~gG~i~i~s~ 203 (222)
T 3jz3_A 186 IVQRIAKLHGMNVEFGNA 203 (222)
T ss_dssp HHHHHHHHTTCEEECCBC
T ss_pred HHHHHHHHcCCEEEEEcC
Confidence 332 134555555443
No 45
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.20 E-value=0.00042 Score=68.60 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
+..+|.+||+||+++.. ..|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+. +..|+|
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-------~g~GlG 222 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARR------ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-------GGPGLG 222 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEE------CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS-------CCCTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEe------cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-------CCCccc
Confidence 45679999999999865 456666653 345668999999999999999888764333221 346888
Q ss_pred eeeec---cccCCeEEEEEee
Q 006073 241 FKTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 241 fKsA~---~~lg~~v~V~Sk~ 258 (662)
+..+- -.+|..+.+.+..
T Consensus 223 L~i~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 223 LALVKALVELHGGWVALESEP 243 (268)
T ss_dssp HHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 75332 2456777776643
No 46
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.20 E-value=9.9e-05 Score=69.90 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcccccC--------------CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH
Q 006073 163 IFGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 215 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~--------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel 215 (662)
+..+|.+||+||+.++ ...|.|.+.. ..+.-.|.|.|||.||+++++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~ 108 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKI 108 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEE------ETTEEEEEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHH
Confidence 4456999999999985 3456666653 234567999999999999987
No 47
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.18 E-value=0.00023 Score=77.02 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcccccCC----------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCC----
Q 006073 163 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA---- 228 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A----------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~---- 228 (662)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+..
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~ 327 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL------GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcc
Confidence 34568999999999843 268887764 3445679999999999999999998744433321
Q ss_pred -CCCCcccccCceeeeec---cccCCeEEEEEee
Q 006073 229 -DDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 229 -~~~~~IG~fGiGfKsA~---~~lg~~v~V~Sk~ 258 (662)
......+.+|+|+..+- -..|-++.|.|..
T Consensus 328 ~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 328 PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp -----CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 01223456899985332 2457777777754
No 48
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.11 E-value=0.00018 Score=76.75 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcccccCC----------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCC---
Q 006073 163 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD--- 229 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A----------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~--- 229 (662)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 239 L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~ 312 (388)
T 1gkz_A 239 LDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQD 312 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC------
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccc
Confidence 55789999999999842 168888764 34466799999999999999999887444333210
Q ss_pred ----------------CCCcccccCceeeeec---cccCCeEEEEEee
Q 006073 230 ----------------DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 230 ----------------~~~~IG~fGiGfKsA~---~~lg~~v~V~Sk~ 258 (662)
.....+.+|+|+..+- -.+|.++.|.|..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~ 360 (388)
T 1gkz_A 313 PRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ 360 (388)
T ss_dssp -------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 0123456888885432 2457788887754
No 49
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.11 E-value=0.00058 Score=66.18 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
+..+|.+||+||+.+. +..|.|.+.. ..+.-.|.|.|||.||+.+++.+++...++.+ ..+..|+|
T Consensus 124 l~~il~nLl~NA~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~------~~~g~GlG 191 (244)
T 3d36_A 124 FRQCLLNVMKNAIEAMPNGGTLQVYVSI------DNGRVLIRIADTGVGMTKEQLERLGEPYFTTK------GVKGTGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEEEEEE------ETTEEEEEEEECSSCCCHHHHHHTTSTTCCSS------GGGCCSCH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEEE------eCCEEEEEEEecCCCCCHHHHHHHhcccccCC------CCCCcchh
Confidence 4567999999999986 3566666653 23466899999999999999998876444322 12346888
Q ss_pred eeeec---cccCCeEEEEEee
Q 006073 241 FKTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 241 fKsA~---~~lg~~v~V~Sk~ 258 (662)
+..+- -.+|..+.+.+..
T Consensus 192 L~i~~~i~~~~gG~i~~~~~~ 212 (244)
T 3d36_A 192 MMVVYRIIESMNGTIRIESEI 212 (244)
T ss_dssp HHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 85432 2457777777753
No 50
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.06 E-value=0.00023 Score=63.52 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCcee
Q 006073 163 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 241 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGf 241 (662)
+..++.|||+||+.+. ++.|.|.+.. ..+.-.|.|.|||.||+++++ +..|+|+
T Consensus 41 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 95 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 95 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCSCSSC-------------------CCTTSHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEE------eCCEEEEEEEECCcCcCcccC-------------------CCCCccH
Confidence 4568999999999874 6778887764 234568999999999987654 2247887
Q ss_pred eeec---cccCCeEEEEEee
Q 006073 242 KTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 242 KsA~---~~lg~~v~V~Sk~ 258 (662)
..+. -.+|..+.+.|..
T Consensus 96 ~~~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 96 LGMRERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 5322 2356666666644
No 51
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.02 E-value=0.00016 Score=65.74 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcccccC---CCccEEEEEeccccc----CCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCccc
Q 006073 163 IFGAIAELVDNSRDAK---ATKLEISIESIYFKK----AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 235 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~---At~V~I~I~~~~~~~----~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG 235 (662)
+..+|.+||+||+.+. ...|.|.+....+.. .....-.|.|.|||.||+.+++.+.+...++.+. +
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-------~ 121 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-------G 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------C
Confidence 4566999999999975 456776665311000 0001457899999999999999888754333221 3
Q ss_pred ccCceeeeec---cccCCeEEEEEee
Q 006073 236 RFGVGFKTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 236 ~fGiGfKsA~---~~lg~~v~V~Sk~ 258 (662)
..|+|+..+- -.+|..+.+.+..
T Consensus 122 g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 122 GTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 4688875332 2457777777654
No 52
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.02 E-value=0.00045 Score=64.65 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
+..+|.+||+||+++.. ..+.|.+... ...+...|.|.|||.||+.+++.+++...++.... .....+..|+|
T Consensus 44 l~~il~nLl~NAi~~~~~~~~i~I~i~~~----~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~-~~~~~~g~GlG 118 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPEGGHVTFSIDVN----EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKA-RTRKLGGTGLG 118 (177)
T ss_dssp HHHHHHHHHHHHHHTCCTTCCEEEEEEEE----TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------CCCCCCH
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEc----cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCC-CCCCCCCCCcC
Confidence 44569999999999864 4566665321 13345678999999999999988887533332211 12223457888
Q ss_pred eeeec---cccCCeEEEEEeeC
Q 006073 241 FKTGA---MRLGKDALVLTQTA 259 (662)
Q Consensus 241 fKsA~---~~lg~~v~V~Sk~~ 259 (662)
++.+- -.+|..+.+.+...
T Consensus 119 L~iv~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 119 LAIAKEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp HHHHHHHHHHTTCCEEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 86432 24566677766543
No 53
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.90 E-value=0.00075 Score=72.20 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcccccC------------C--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH-------------
Q 006073 163 IFGAIAELVDNSRDAK------------A--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV------------- 215 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~------------A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel------------- 215 (662)
+..++.+||.||++++ . ..|.|.+.. ..+.-.|.|.|||.||+++.+
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~------~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~ 180 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 180 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE------ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCST
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChh
Confidence 3456899999999997 2 345665543 234567899999999999987
Q ss_pred -----------HHHhhcccCCCCCCCCCcccccCceeeee---ccccCCeEEEEEeeC
Q 006073 216 -----------VRMTYFGHKQPDADDPNRIGRFGVGFKTG---AMRLGKDALVLTQTA 259 (662)
Q Consensus 216 -----------~~~l~fG~s~k~~~~~~~IG~fGiGfKsA---~~~lg~~v~V~Sk~~ 259 (662)
...|.-|++.+. .....+..|+|+..+ .-.+|-.+.|.|...
T Consensus 181 ~~~~~~~~~~~~~iF~p~fst~~--~~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g 236 (379)
T 1b3q_A 181 KAATLSDQEILNFLFVPGFSTKE--KVSEVSGRGVGMDVVKNVVESLNGSMGIESEKD 236 (379)
T ss_dssp TTTTSCTHHHHSGGGSTTCC-------------CCCSHHHHHHHHHTTCEEEEEEETT
T ss_pred hhhcCCHHHHHHHhcCCCCccCC--ccCCCCCccccHHHHHHHHHHCCCEEEEEEcCC
Confidence 334444444432 123345678998532 225677888877643
No 54
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.80 E-value=0.00074 Score=64.81 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCcee
Q 006073 163 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 241 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGf 241 (662)
+..++.||++||+.++ ++.|.|.+.. ..+.-.|.|.|||.||+++.+ +..|+|+
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 185 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 185 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCC---------------------------CHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------eCCEEEEEEEECCcCCCCCCC-------------------CCCCCCH
Confidence 4567999999999874 5677777764 234568999999999998875 2247787
Q ss_pred eeec---cccCCeEEEEEee
Q 006073 242 KTGA---MRLGKDALVLTQT 258 (662)
Q Consensus 242 KsA~---~~lg~~v~V~Sk~ 258 (662)
..+- -.+|..+.|.|..
T Consensus 186 ~~~~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 186 LGMRERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEeCCC
Confidence 4321 2456677766654
No 55
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.62 E-value=0.001 Score=67.98 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 163 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
+..+|.+||+||+++. +..|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+. +..|+|
T Consensus 245 l~~vl~nLl~NA~k~~~~~~~i~i~~~~------~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-------~g~GlG 311 (349)
T 3a0r_A 245 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLG 311 (349)
T ss_dssp HHHHHHHHHTHHHHTTCTTCCEEEEEEE------ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-------------CC
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEEEe------cCCEEEEEEEECCCCCChHHHhhcCCCCccCCC-------CCccch
Confidence 5578999999999986 4677777763 234567999999999999998888764443331 235888
Q ss_pred eeeec--c--ccCCeEEEEEe
Q 006073 241 FKTGA--M--RLGKDALVLTQ 257 (662)
Q Consensus 241 fKsA~--~--~lg~~v~V~Sk 257 (662)
+..+- + ..|..+.+.+.
T Consensus 312 L~i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 312 LSICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp CTHHHHHHHHTTCSBCCEEEC
T ss_pred HHHHHHHHHHhCCCEEEEEeC
Confidence 75331 1 35666666554
No 56
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.41 E-value=0.0027 Score=55.87 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=49.5
Q ss_pred CHHHHHHHHHhcccccC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCce
Q 006073 162 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 240 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiG 240 (662)
.+..++.|||+||+.+. +..|.|.+.. ..+ -.|.|.|||.||+.+. .|+|
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~----------------------~GlG 93 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKV------DDD-LCIEVTDNGRGMPDEF----------------------TGSG 93 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEE------SSE-EEEEEEECCCCCTTTT----------------------CSHH
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEE------cCC-EEEEEecCCCCCCccc----------------------CCcC
Confidence 36678999999999986 6778888764 334 6789999999998754 3788
Q ss_pred eeeec---cccCCeEEEEEeeC
Q 006073 241 FKTGA---MRLGKDALVLTQTA 259 (662)
Q Consensus 241 fKsA~---~~lg~~v~V~Sk~~ 259 (662)
+..+. -.+|-.+.+.+...
T Consensus 94 L~i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 94 LTNLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHcCCEEEEeeCCC
Confidence 75322 23566666666543
No 57
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.05 E-value=0.0042 Score=54.33 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH
Q 006073 163 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 214 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 214 (662)
+..++.||++||+.+. +..|.|.+.. ..+ -.|.|.|||.||+++.
T Consensus 40 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 40 AEAVLREAVSNAVRHANATSLAINVSV------EDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEEEE------EEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEe------CCC-EEEEEEECCCCCCccc
Confidence 5678999999999975 4577777764 233 6889999999998876
No 58
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.015 Score=70.81 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=71.2
Q ss_pred HHHHHHHHhccccc---C-C-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH--------HHHHhh-cccCCCC--
Q 006073 164 FGAIAELVDNSRDA---K-A-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPD-- 227 (662)
Q Consensus 164 f~AIaELIdNA~DA---~-A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------l~~~l~-fG~s~k~-- 227 (662)
.-.+.|+||||+|. | + +.|+|.|.. ....++|.|||.||+-+- ++-+|+ +..+.+-
T Consensus 61 ~hl~~EildNsiDea~ag~~~~~I~V~i~~--------~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~ 132 (1177)
T 4gfh_A 61 FKIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDD 132 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCC
T ss_pred eeEeeEEEEChHhHHhhCCCCCeEEEEEEC--------CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCC
Confidence 34489999999993 4 2 678888862 246899999999998542 122233 1111121
Q ss_pred CCCCCcccccCceeeeeccccCCeEEEEEe--eCCCCceeEEEeeecCCCccEEEcCc---ccCCCCcEEEEEec
Q 006073 228 ADDPNRIGRFGVGFKTGAMRLGKDALVLTQ--TADSRSIAFLSQSLNQGKDNLEIPIV---SYYRKGQFMELDTV 297 (662)
Q Consensus 228 ~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk--~~g~~s~~~ls~sf~~g~~~i~VP~~---~~~~~Gt~I~l~~~ 297 (662)
..-.-+-|..|+|. ++.-.|+..+.|.+. +.|. .+.++|..|......|.. .-...||+|+..+.
T Consensus 133 ~~ykvSGGLHGVG~-svVNALS~~~~vev~~~r~Gk----~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F~PD 202 (1177)
T 4gfh_A 133 DEKKVTGGRNGYGA-KLCNIFSTEFILETADLNVGQ----KYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPD 202 (1177)
T ss_dssp SSCCCCSCCSSCHH-HHHHHTEEEEEEEEEETTTTE----EEEEEEETTTTEECCCEEEECCSSCCCEEEEEEEC
T ss_pred CCCeEeccCCChhh-hHHhhcCCceEEEEEEEcCCE----EEEEEEECCcccCCCCeeecCCCCCCceEEEEEeC
Confidence 11134569999998 444457787776664 3332 355666544322222221 12246899887654
No 59
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=93.83 E-value=0.045 Score=54.45 Aligned_cols=82 Identities=9% Similarity=-0.088 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCC--CCHHHHHHHhhcccCCCCCCCCCcccccC
Q 006073 163 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHG--MTHQDVVRMTYFGHKQPDADDPNRIGRFG 238 (662)
Q Consensus 163 ~f~AIaELIdNA~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~G--Mt~eel~~~l~fG~s~k~~~~~~~IG~fG 238 (662)
...++..||+||++|.. ..|.|.+.. ..+...|.|.|+|.| |+++.+.+.+.-..+. ..+-.|
T Consensus 147 ~~qvl~NLl~NA~~a~~~gg~I~v~~~~------~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~-------~~~G~G 213 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAGGVATVKGVA------ADGRFSIIADAKGPRARLRPEVLAGLKGEPLAE-------GLGGPW 213 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEEEEE------ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCS-------SCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCC-------CCCCcc
Confidence 44678899999999954 356666653 345668999999987 6666566554311111 123348
Q ss_pred ceeeee---ccccCCeEEEEEe
Q 006073 239 VGFKTG---AMRLGKDALVLTQ 257 (662)
Q Consensus 239 iGfKsA---~~~lg~~v~V~Sk 257 (662)
+|+..+ .-..|-.+.|.|.
T Consensus 214 LGLai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 214 VQAAYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEEc
Confidence 887532 1245777777664
No 60
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=93.29 E-value=0.0089 Score=70.04 Aligned_cols=47 Identities=40% Similarity=0.820 Sum_probs=37.7
Q ss_pred Cceeccc--chhhhhcCCCCCC-CCCCCCceeeccCCC-------CCCCCCCccccc
Q 006073 552 QEWVQCN--KCRKWRMLDPGFD-TKSLPVEWFCYMKPF-------EGLCDLPEQKVD 598 (662)
Q Consensus 552 ~~WvQCd--~C~KWR~Lp~~~~-~~~lp~~W~C~~n~~-------~~~C~~pEe~~~ 598 (662)
.-|+||- .|.|||+||...+ ..+++.+..|.|-++ ...|+.||+.--
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 147 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLRV 147 (776)
T ss_dssp CCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCCC-------CCGGGSCCCHHH
T ss_pred cHhhhcCcccccchhhCCCcCCCChhhhheeeccCccCcccccccCCCCCCCcccch
Confidence 4899999 9999999998864 356788999998642 267999998543
No 61
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=91.67 E-value=0.062 Score=44.10 Aligned_cols=33 Identities=21% Similarity=0.680 Sum_probs=25.7
Q ss_pred CCceecccchhhhhcCC-CCCCCCCCCCceeecc
Q 006073 551 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCYM 583 (662)
Q Consensus 551 ~~~WvQCd~C~KWR~Lp-~~~~~~~lp~~W~C~~ 583 (662)
...+||||.|..|-.+. .++....+|+.|+|..
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~ 63 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQK 63 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECCC
Confidence 45799999999998876 3454456889999963
No 62
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=90.63 E-value=0.065 Score=41.46 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=25.4
Q ss_pred CCceecccchhhhhcCC-CCCCCCCCCCceeec
Q 006073 551 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 582 (662)
Q Consensus 551 ~~~WvQCd~C~KWR~Lp-~~~~~~~lp~~W~C~ 582 (662)
+..+||||.|..|-.+. -++....+|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 45899999999998877 345445678999995
No 63
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.21 E-value=0.13 Score=41.15 Aligned_cols=34 Identities=18% Similarity=0.461 Sum_probs=23.9
Q ss_pred CCCceecccchhhhhcCC-CCCCCC--CCCCceeecc
Q 006073 550 PDQEWVQCNKCRKWRMLD-PGFDTK--SLPVEWFCYM 583 (662)
Q Consensus 550 ~~~~WvQCd~C~KWR~Lp-~~~~~~--~lp~~W~C~~ 583 (662)
+...|||||.|..|-... .++... ..++.|+|..
T Consensus 18 ~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 457899999999997765 233322 2468999964
No 64
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.78 E-value=0.15 Score=44.67 Aligned_cols=33 Identities=30% Similarity=0.815 Sum_probs=25.9
Q ss_pred CCceecccchhhhhcCC-CCCCCCCCCCceeecc
Q 006073 551 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCYM 583 (662)
Q Consensus 551 ~~~WvQCd~C~KWR~Lp-~~~~~~~lp~~W~C~~ 583 (662)
...+||||.|.+|-.+. .++....+|+.|+|..
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~ 72 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCER 72 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTT
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCC
Confidence 45899999999998876 3344467899999964
No 65
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=88.65 E-value=0.35 Score=51.80 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=33.6
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 006073 162 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 213 (662)
Q Consensus 162 ~~f~AIaELIdNA~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 213 (662)
.+.-++.||+.||+..+ ...|.|.+... ..+.-.|.|.|+|.|+++.
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~-----~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALA-----GDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC-----TTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc-----CCCEEEEEEEECCCCCCCC
Confidence 45678999999999986 56788887641 1235688999999999875
No 66
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.20 E-value=0.21 Score=41.03 Aligned_cols=32 Identities=22% Similarity=0.809 Sum_probs=23.8
Q ss_pred CceecccchhhhhcCC-CCCC-CCCCCCceeecc
Q 006073 552 QEWVQCNKCRKWRMLD-PGFD-TKSLPVEWFCYM 583 (662)
Q Consensus 552 ~~WvQCd~C~KWR~Lp-~~~~-~~~lp~~W~C~~ 583 (662)
..|||||.|..|-.+. .++. ...+|+.|+|..
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~ 62 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCFR 62 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECCC
Confidence 4799999999997775 2333 235789999963
No 67
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=78.20 E-value=0.9 Score=44.25 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=25.6
Q ss_pred CCccEEEEEecccccCC--CCCCEEEEEeCCCCCCHHHHHHHhh
Q 006073 179 ATKLEISIESIYFKKAG--KDIPMLSIIDDGHGMTHQDVVRMTY 220 (662)
Q Consensus 179 At~V~I~I~~~~~~~~~--~~~~~L~I~DNG~GMt~eel~~~l~ 220 (662)
...|.|.+.. . ++...|.|.|+|.|++.+.+.+++.
T Consensus 130 ~~~I~i~i~~------~~~~~~l~i~V~d~G~~i~~e~~~~if~ 167 (192)
T 1ixm_A 130 ENHLTVSLQT------DHPDRQLILYLDFHGAFADPSAFDDIRQ 167 (192)
T ss_dssp CCEEEEEEEC------CCSSSSCEEEEEEESCBSCGGGCC----
T ss_pred CCeEEEEEEE------ecCCCEEEEEEEeCCCCCCHHHHHHHHh
Confidence 4668887763 2 3568899999999999998877764
No 68
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=77.78 E-value=0.38 Score=39.90 Aligned_cols=34 Identities=15% Similarity=0.398 Sum_probs=22.7
Q ss_pred CCCceecccchhhhhcCC-CCCCCC--CCCCceeecc
Q 006073 550 PDQEWVQCNKCRKWRMLD-PGFDTK--SLPVEWFCYM 583 (662)
Q Consensus 550 ~~~~WvQCd~C~KWR~Lp-~~~~~~--~lp~~W~C~~ 583 (662)
++..|||||.|..|-... -++... ..++.|+|..
T Consensus 21 ~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~ 57 (75)
T 3kqi_A 21 VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPN 57 (75)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHH
T ss_pred CCCCEEEcCCCCCCEecccccccccccCCCCEEECCC
Confidence 456899999999996554 122222 2347899864
No 69
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.06 E-value=0.21 Score=41.88 Aligned_cols=34 Identities=15% Similarity=0.342 Sum_probs=22.7
Q ss_pred CCCceecccchhhhhcCC-CCCCC--CCCCCceeecc
Q 006073 550 PDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 583 (662)
Q Consensus 550 ~~~~WvQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~~ 583 (662)
+...|||||.|..|=... .++.. ...++.|+|..
T Consensus 23 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 59 (79)
T 1wep_A 23 VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPD 59 (79)
T ss_dssp SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTT
T ss_pred CCCceEEcCCCCCcEEeeecCcccccccCCCeEECCC
Confidence 357899999999995543 12221 23468999963
No 70
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=71.71 E-value=1.5 Score=35.61 Aligned_cols=33 Identities=21% Similarity=0.807 Sum_probs=24.0
Q ss_pred CCceeccc--chhhhhcCC-CCC-----CCCCCCCceeecc
Q 006073 551 DQEWVQCN--KCRKWRMLD-PGF-----DTKSLPVEWFCYM 583 (662)
Q Consensus 551 ~~~WvQCd--~C~KWR~Lp-~~~-----~~~~lp~~W~C~~ 583 (662)
+..+|||| .|..|-... -++ ....+|++|+|..
T Consensus 21 ~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~ 61 (68)
T 2rsd_A 21 NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCEL 61 (68)
T ss_dssp CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHH
T ss_pred CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcC
Confidence 45899999 499998876 233 2245789999963
No 71
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=70.18 E-value=0.89 Score=37.92 Aligned_cols=34 Identities=21% Similarity=0.705 Sum_probs=24.1
Q ss_pred CCCceeccc--chhhhhcCC-CCCCC------CCCCCceeecc
Q 006073 550 PDQEWVQCN--KCRKWRMLD-PGFDT------KSLPVEWFCYM 583 (662)
Q Consensus 550 ~~~~WvQCd--~C~KWR~Lp-~~~~~------~~lp~~W~C~~ 583 (662)
.+..||||| .|..|-.+. -++.. ..+|++|+|..
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~ 68 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEI 68 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCC
Confidence 356899999 999997654 12221 15789999964
No 72
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=69.33 E-value=1.3 Score=34.12 Aligned_cols=35 Identities=26% Similarity=0.702 Sum_probs=23.2
Q ss_pred CCCCCceeccc-chhhhhcCCC-CCCCC-CCCCceeec
Q 006073 548 YKPDQEWVQCN-KCRKWRMLDP-GFDTK-SLPVEWFCY 582 (662)
Q Consensus 548 ~~~~~~WvQCd-~C~KWR~Lp~-~~~~~-~lp~~W~C~ 582 (662)
+.++..||||| .|.+|-.+.= ++... ..+++|+|.
T Consensus 12 ~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 12 CKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred cCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 33467899999 8999976652 33221 124789985
No 73
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=69.27 E-value=0.67 Score=43.98 Aligned_cols=34 Identities=21% Similarity=0.546 Sum_probs=22.9
Q ss_pred CCCceecccchhhhhcCC-CCCC--CCCCCCceeecc
Q 006073 550 PDQEWVQCNKCRKWRMLD-PGFD--TKSLPVEWFCYM 583 (662)
Q Consensus 550 ~~~~WvQCd~C~KWR~Lp-~~~~--~~~lp~~W~C~~ 583 (662)
+...|||||.|..|=... .++. ....++.|+|..
T Consensus 19 ~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~ 55 (174)
T 2ri7_A 19 ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQ 55 (174)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHH
T ss_pred CCCCEeECCCCCchhChhhcCCchhhccCccCeecCC
Confidence 356899999999995543 1221 124578999975
No 74
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=69.08 E-value=0.85 Score=37.49 Aligned_cols=32 Identities=22% Similarity=0.708 Sum_probs=20.1
Q ss_pred CceecccchhhhhcCC-CCCCCCC-CCCceeecc
Q 006073 552 QEWVQCNKCRKWRMLD-PGFDTKS-LPVEWFCYM 583 (662)
Q Consensus 552 ~~WvQCd~C~KWR~Lp-~~~~~~~-lp~~W~C~~ 583 (662)
..|||||.|..|=.+. .++.... ..+.|+|..
T Consensus 31 ~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~ 64 (75)
T 2k16_A 31 SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPK 64 (75)
T ss_dssp CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTT
T ss_pred CCEEEcCCCCcccccccCCCCccCCCCCCEEChh
Confidence 4799999999996443 1111111 237899953
No 75
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=66.81 E-value=1.4 Score=35.65 Aligned_cols=19 Identities=32% Similarity=0.758 Sum_probs=15.2
Q ss_pred CCCCCceeccc-chhhhhcC
Q 006073 548 YKPDQEWVQCN-KCRKWRML 566 (662)
Q Consensus 548 ~~~~~~WvQCd-~C~KWR~L 566 (662)
+.++..||||| .|.+|=..
T Consensus 18 ~~~~~~mI~CD~~C~~WfH~ 37 (65)
T 2vpb_A 18 VNDDQDAILCEASCQKWFHR 37 (65)
T ss_dssp CCTTSCEEEBTTTTCCEEEH
T ss_pred cCCCCCeEecccCccccCch
Confidence 45678999999 99999443
No 76
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.68 E-value=4.6 Score=34.94 Aligned_cols=31 Identities=26% Similarity=0.757 Sum_probs=20.5
Q ss_pred Cceecccc--hh-hhhcCCC-CCCCCCCCCceeecc
Q 006073 552 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCYM 583 (662)
Q Consensus 552 ~~WvQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~~ 583 (662)
..+||||. |. .|=.+.= ++. ..-+++|||..
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl~-~~p~g~W~Cp~ 81 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCPR 81 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTCS-SCCCSSCCCTT
T ss_pred CCEeEecCCCCCCCCEecccCCcC-cCCCCCEECcC
Confidence 47999999 77 8966542 222 22347999963
No 77
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.12 E-value=3.6 Score=33.86 Aligned_cols=33 Identities=18% Similarity=0.527 Sum_probs=21.3
Q ss_pred CCceecccchhhhhcCC-CCCCCCC------CCCceeecc
Q 006073 551 DQEWVQCNKCRKWRMLD-PGFDTKS------LPVEWFCYM 583 (662)
Q Consensus 551 ~~~WvQCd~C~KWR~Lp-~~~~~~~------lp~~W~C~~ 583 (662)
...|||||.|..|-... .++.... .++.|+|..
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~ 66 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPN 66 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcC
Confidence 35899999999996543 1222111 368899963
No 78
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=48.39 E-value=6.7 Score=32.19 Aligned_cols=31 Identities=26% Similarity=0.757 Sum_probs=20.6
Q ss_pred Cceecccc--hh-hhhcCCC-CCCCCCCCCceeecc
Q 006073 552 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCYM 583 (662)
Q Consensus 552 ~~WvQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~~ 583 (662)
..+||||. |. .|=.+.= ++. ..-.++|||..
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~-~~p~g~w~Cp~ 61 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCPR 61 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCS-SCCSSCCCCTT
T ss_pred CCEeEeeCCCCCCccEecccCCcC-cCCCCCEECCC
Confidence 57999999 87 7976652 222 12238999963
No 79
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=39.51 E-value=6.6 Score=31.35 Aligned_cols=30 Identities=20% Similarity=0.708 Sum_probs=19.7
Q ss_pred Cceecccc--hh-hhhcCC-CCCCCCCCCCceeec
Q 006073 552 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 582 (662)
Q Consensus 552 ~~WvQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 582 (662)
..+||||. |. .|=.+. -++.. .-.++|||.
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~~-~p~~~w~Cp 55 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLTY-KPKGKWYCP 55 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSS-CCSSCCCCH
T ss_pred CCeeeeeCCCCCcccEecccCCcCc-CCCCCEECc
Confidence 47999999 55 896654 22222 234799995
No 80
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=39.42 E-value=8.4 Score=43.10 Aligned_cols=35 Identities=29% Similarity=0.799 Sum_probs=25.2
Q ss_pred CCCCceecccchhhhhcCC-CCCCC--CCCCCceeecc
Q 006073 549 KPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 583 (662)
Q Consensus 549 ~~~~~WvQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~~ 583 (662)
-++..|||||.|..|=... -++.. ....++|+|..
T Consensus 53 n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~ 90 (528)
T 3pur_A 53 KNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPK 90 (528)
T ss_dssp TSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTT
T ss_pred CcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcC
Confidence 4678999999999998764 23332 24568999954
No 81
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=38.64 E-value=7 Score=30.87 Aligned_cols=30 Identities=27% Similarity=0.765 Sum_probs=19.6
Q ss_pred Cceecccc--hh-hhhcCC-CCCCCCCCCCceeec
Q 006073 552 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 582 (662)
Q Consensus 552 ~~WvQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 582 (662)
..+||||. |. .|=.+. -++.. .-.++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~~-~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLTT-KPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSS-CCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCccc-CCCCCEECc
Confidence 47999999 77 796654 12221 223789995
No 82
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=38.48 E-value=3.4 Score=45.85 Aligned_cols=35 Identities=14% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCCCceecccchhhhhcCC-CCCCC--CCCCCceeecc
Q 006073 549 KPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 583 (662)
Q Consensus 549 ~~~~~WvQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~~ 583 (662)
.+...|||||.|..|=... -++.. ...++.|+|..
T Consensus 47 d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 84 (488)
T 3kv5_D 47 DVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPN 84 (488)
T ss_dssp CTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHH
T ss_pred CCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCC
Confidence 3457899999999996554 12322 23468999965
No 83
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=38.12 E-value=8.1 Score=37.43 Aligned_cols=33 Identities=24% Similarity=0.641 Sum_probs=21.6
Q ss_pred CceecccchhhhhcCC-CCCCC------CCCCC--ceeeccC
Q 006073 552 QEWVQCNKCRKWRMLD-PGFDT------KSLPV--EWFCYMK 584 (662)
Q Consensus 552 ~~WvQCd~C~KWR~Lp-~~~~~------~~lp~--~W~C~~n 584 (662)
..|||||.|..|=... .++.. ..+|+ .|+|..-
T Consensus 19 ~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C 60 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNC 60 (183)
T ss_dssp CCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTT
T ss_pred CCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCC
Confidence 3699999999998764 22321 12344 7999753
No 84
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=36.52 E-value=13 Score=32.05 Aligned_cols=30 Identities=20% Similarity=0.609 Sum_probs=19.5
Q ss_pred Cceecccchh---hhhcCC-CCCCCCCCCCceeec
Q 006073 552 QEWVQCNKCR---KWRMLD-PGFDTKSLPVEWFCY 582 (662)
Q Consensus 552 ~~WvQCd~C~---KWR~Lp-~~~~~~~lp~~W~C~ 582 (662)
..+|+||.|. .|=.+. -++.. ...+.|||.
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~~-~p~~~W~Cp 70 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLKQ-APKGKWYCS 70 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCSS-CTTSCCCSS
T ss_pred CCEEEecCCCCccccCcCccCCCCc-CCCCCccCC
Confidence 3699999976 896664 22321 223689995
No 85
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=35.49 E-value=9.3 Score=33.58 Aligned_cols=35 Identities=26% Similarity=0.727 Sum_probs=22.0
Q ss_pred CCCCceeccc-chhhhhcCC-CCCCCC-------CCCCceeecc
Q 006073 549 KPDQEWVQCN-KCRKWRMLD-PGFDTK-------SLPVEWFCYM 583 (662)
Q Consensus 549 ~~~~~WvQCd-~C~KWR~Lp-~~~~~~-------~lp~~W~C~~ 583 (662)
.++..||||| .|..|=... -++... +-.+.|+|..
T Consensus 14 ~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~ 57 (105)
T 2xb1_A 14 NDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDL 57 (105)
T ss_dssp CTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHH
T ss_pred CCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECcc
Confidence 3567899998 999996553 122210 1237899954
No 86
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=29.78 E-value=12 Score=29.55 Aligned_cols=30 Identities=30% Similarity=0.842 Sum_probs=19.6
Q ss_pred Cceecccc--hh-hhhcCC-CCCCCCCCCCceeec
Q 006073 552 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 582 (662)
Q Consensus 552 ~~WvQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 582 (662)
...|+||. |. .|=.+. -++.. .-.++|||.
T Consensus 21 g~mi~CD~cdC~~~wfH~~Cvgl~~-~p~g~w~C~ 54 (60)
T 2vnf_A 21 GEMIGCDNPDCSIEWFHFACVGLTT-KPRGKWFCP 54 (60)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSS-CCSSCCCCH
T ss_pred CCEEEeCCCCCCCceEehhcCCCCc-CCCCCEECc
Confidence 57999999 66 796654 22221 223799995
No 87
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=26.89 E-value=13 Score=32.71 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=10.4
Q ss_pred eecccchhhhhc
Q 006073 554 WVQCNKCRKWRM 565 (662)
Q Consensus 554 WvQCd~C~KWR~ 565 (662)
.||||.|..|=.
T Consensus 2 mi~c~~c~~w~H 13 (140)
T 2ku7_A 2 MMQCGKCDRWVH 13 (140)
T ss_dssp CCCCSCCSSCHH
T ss_pred ccccccCCCccC
Confidence 699999999954
No 88
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=26.05 E-value=2e+02 Score=30.58 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=12.2
Q ss_pred hcCCCeEEEEcCeE
Q 006073 401 FLVPRMKIYVQGSL 414 (662)
Q Consensus 401 YL~Prm~I~LnG~k 414 (662)
||.|+++|.|++..
T Consensus 193 ~lnpgv~i~l~d~~ 206 (390)
T 1s16_A 193 VLCPGVEITFKDEI 206 (390)
T ss_dssp HHSTTCEEEEEETT
T ss_pred hcCCCcEEEEEeCC
Confidence 68999999999766
No 89
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.26 E-value=16 Score=29.81 Aligned_cols=31 Identities=23% Similarity=0.587 Sum_probs=19.5
Q ss_pred CCceecccchh---hhhcCC-CCCCCCCCCCceeec
Q 006073 551 DQEWVQCNKCR---KWRMLD-PGFDTKSLPVEWFCY 582 (662)
Q Consensus 551 ~~~WvQCd~C~---KWR~Lp-~~~~~~~lp~~W~C~ 582 (662)
...+||||.|. .|=.+. .++.. ...++|||.
T Consensus 16 ~g~MI~CD~cdC~~~WfH~~Cvgl~~-~p~~~w~Cp 50 (70)
T 1x4i_A 16 YGEMVGCDNQDCPIEWFHYGCVGLTE-APKGKWYCP 50 (70)
T ss_dssp CSSEECCSCTTCSCCCEEHHHHTCSS-CCSSCCCCH
T ss_pred CCCEeEeCCCCCCccCCcccccccCc-CCCCCEECC
Confidence 34899999974 785543 12222 235789985
Done!