Query 006074
Match_columns 662
No_of_seqs 206 out of 1042
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 15:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hye_C Cullin-4A, CUL-4A; beta 100.0 1E-131 4E-136 1139.9 68.9 661 1-662 98-759 (759)
2 1ldj_A Cullin homolog 1, CUL-1 100.0 6E-128 2E-132 1109.6 59.8 653 1-662 68-760 (760)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 7.9E-81 2.7E-85 661.3 33.3 357 305-662 4-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 5.7E-57 2E-61 484.3 35.3 315 1-319 69-396 (410)
5 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 2.2E-56 7.6E-61 472.2 35.2 304 1-304 49-353 (354)
6 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 2.6E-54 9E-59 458.0 28.7 300 1-303 52-364 (364)
7 2wzk_A Cullin-5, CUL-5; UBL co 100.0 5.4E-52 1.9E-56 444.1 28.0 300 1-304 57-381 (391)
8 2do7_A Cullin-4B, CUL-4B; heli 99.9 8.8E-28 3E-32 199.7 4.9 93 570-662 3-95 (101)
9 3o2p_E Cell division control p 99.9 5.7E-26 2E-30 184.1 6.1 80 582-662 7-88 (88)
10 1iuy_A Cullin-3 homologue; win 99.9 1.5E-26 5.2E-31 189.7 1.6 85 578-662 6-92 (92)
11 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 4.5E-26 1.5E-30 180.4 3.6 73 590-662 3-77 (77)
12 3cuo_A Uncharacterized HTH-typ 91.8 0.25 8.6E-06 40.3 5.7 50 495-546 23-72 (99)
13 2jt1_A PEFI protein; solution 91.4 0.18 6.2E-06 39.5 4.1 50 500-551 8-63 (77)
14 3jth_A Transcription activator 90.8 0.48 1.6E-05 38.7 6.4 50 495-547 22-71 (98)
15 3lmm_A Uncharacterized protein 90.0 0.15 5.2E-06 56.4 3.4 135 495-656 429-568 (583)
16 2htj_A P fimbrial regulatory p 89.7 0.65 2.2E-05 36.5 6.1 59 500-562 4-62 (81)
17 2fu4_A Ferric uptake regulatio 89.5 0.33 1.1E-05 38.4 4.2 52 493-546 14-72 (83)
18 1y0u_A Arsenical resistance op 89.3 0.64 2.2E-05 37.8 5.9 56 495-562 30-85 (96)
19 3tgn_A ADC operon repressor AD 89.1 0.49 1.7E-05 41.5 5.6 52 492-546 34-85 (146)
20 1qgp_A Protein (double strande 89.1 0.45 1.5E-05 37.2 4.6 46 499-546 17-65 (77)
21 1sfx_A Conserved hypothetical 89.1 0.33 1.1E-05 40.1 4.1 50 494-545 18-67 (109)
22 3g3z_A NMB1585, transcriptiona 88.8 0.44 1.5E-05 41.9 4.9 51 494-546 29-79 (145)
23 3hsr_A HTH-type transcriptiona 88.6 0.37 1.3E-05 42.2 4.3 52 493-546 33-84 (140)
24 2dk5_A DNA-directed RNA polyme 88.6 0.5 1.7E-05 38.3 4.6 54 490-545 14-69 (91)
25 3ech_A MEXR, multidrug resista 87.9 0.35 1.2E-05 42.4 3.7 52 493-546 34-85 (142)
26 1xn7_A Hypothetical protein YH 87.7 0.51 1.7E-05 37.0 4.0 44 500-545 6-49 (78)
27 3nrv_A Putative transcriptiona 87.5 0.56 1.9E-05 41.3 4.8 52 493-546 37-88 (148)
28 1u2w_A CADC repressor, cadmium 87.5 0.82 2.8E-05 39.2 5.7 50 495-546 41-90 (122)
29 3cdh_A Transcriptional regulat 87.4 0.81 2.8E-05 40.6 5.9 51 494-546 41-91 (155)
30 3r0a_A Putative transcriptiona 87.2 0.51 1.8E-05 40.6 4.2 52 492-545 22-75 (123)
31 4hbl_A Transcriptional regulat 87.1 0.47 1.6E-05 42.0 4.1 51 494-546 39-89 (149)
32 1qbj_A Protein (double-strande 87.0 0.92 3.1E-05 35.8 5.2 58 498-562 12-72 (81)
33 2d1h_A ST1889, 109AA long hypo 86.8 0.69 2.4E-05 38.1 4.7 51 494-546 19-70 (109)
34 3oop_A LIN2960 protein; protei 86.8 0.4 1.4E-05 42.0 3.4 51 494-546 35-85 (143)
35 2k02_A Ferrous iron transport 86.6 0.59 2E-05 37.4 3.8 44 500-545 6-49 (87)
36 3pqk_A Biofilm growth-associat 86.5 1.2 4E-05 36.6 5.9 61 495-562 22-82 (102)
37 2fbh_A Transcriptional regulat 86.5 0.66 2.3E-05 40.6 4.7 51 494-546 35-86 (146)
38 2qww_A Transcriptional regulat 86.3 0.7 2.4E-05 41.0 4.8 49 494-544 39-87 (154)
39 2gxg_A 146AA long hypothetical 86.3 0.86 2.9E-05 39.9 5.3 50 494-546 35-84 (146)
40 2frh_A SARA, staphylococcal ac 86.1 0.48 1.6E-05 40.9 3.4 52 493-546 34-87 (127)
41 3eco_A MEPR; mutlidrug efflux 85.9 0.61 2.1E-05 40.6 4.1 51 494-546 29-81 (139)
42 3bj6_A Transcriptional regulat 85.7 0.77 2.6E-05 40.6 4.7 51 494-546 38-88 (152)
43 3bro_A Transcriptional regulat 85.5 0.81 2.8E-05 39.8 4.7 51 494-546 32-84 (141)
44 1jgs_A Multiple antibiotic res 85.5 0.62 2.1E-05 40.4 3.9 51 494-546 32-82 (138)
45 3bpv_A Transcriptional regulat 84.9 0.93 3.2E-05 39.2 4.8 51 494-546 27-77 (138)
46 3k0l_A Repressor protein; heli 84.9 0.59 2E-05 42.0 3.6 51 494-546 44-94 (162)
47 1wi9_A Protein C20ORF116 homol 84.6 0.71 2.4E-05 35.1 3.2 56 601-662 10-65 (72)
48 1tbx_A ORF F-93, hypothetical 84.5 0.77 2.6E-05 37.5 3.8 51 493-545 5-59 (99)
49 1xmk_A Double-stranded RNA-spe 84.5 1.1 3.6E-05 35.2 4.3 49 496-546 11-60 (79)
50 2fa5_A Transcriptional regulat 84.4 0.99 3.4E-05 40.3 4.9 51 494-546 47-97 (162)
51 1bja_A Transcription regulator 84.3 1.1 3.9E-05 36.3 4.5 50 492-543 12-62 (95)
52 3e6m_A MARR family transcripti 84.3 0.66 2.2E-05 41.7 3.6 51 494-546 51-101 (161)
53 1oyi_A Double-stranded RNA-bin 84.2 1 3.6E-05 35.4 4.2 47 497-546 18-64 (82)
54 3bdd_A Regulatory protein MARR 84.1 0.78 2.7E-05 39.9 4.0 52 493-546 28-79 (142)
55 3deu_A Transcriptional regulat 83.8 0.92 3.1E-05 41.1 4.4 51 494-546 51-102 (166)
56 1p6r_A Penicillinase repressor 83.8 0.78 2.7E-05 36.0 3.4 52 493-546 6-61 (82)
57 2pex_A Transcriptional regulat 83.7 0.9 3.1E-05 40.2 4.2 51 494-546 45-95 (153)
58 2hr3_A Probable transcriptiona 83.7 0.88 3E-05 39.9 4.1 52 493-546 32-84 (147)
59 1lj9_A Transcriptional regulat 83.3 0.71 2.4E-05 40.3 3.3 51 494-546 27-77 (144)
60 3bja_A Transcriptional regulat 83.1 0.51 1.7E-05 40.9 2.2 51 494-546 31-81 (139)
61 1r1u_A CZRA, repressor protein 83.0 1.1 3.8E-05 37.2 4.2 48 495-545 25-72 (106)
62 2rdp_A Putative transcriptiona 82.9 0.89 3.1E-05 40.0 3.8 50 494-545 40-89 (150)
63 3cjn_A Transcriptional regulat 82.9 0.91 3.1E-05 40.6 4.0 50 494-545 50-99 (162)
64 3fm5_A Transcriptional regulat 82.9 1.2 4.2E-05 39.2 4.8 51 494-546 37-88 (150)
65 2nyx_A Probable transcriptiona 82.9 0.77 2.6E-05 41.6 3.5 52 493-546 42-93 (168)
66 2nnn_A Probable transcriptiona 82.6 1 3.6E-05 38.9 4.1 51 493-545 35-85 (140)
67 1ku9_A Hypothetical protein MJ 82.5 1.5 5.2E-05 38.3 5.2 51 494-546 24-75 (152)
68 3s2w_A Transcriptional regulat 82.4 0.63 2.2E-05 41.6 2.6 51 494-546 48-98 (159)
69 2eth_A Transcriptional regulat 82.1 1 3.5E-05 40.0 3.9 50 494-545 42-91 (154)
70 2a61_A Transcriptional regulat 82.1 1.1 3.8E-05 39.0 4.1 50 494-545 31-80 (145)
71 1s3j_A YUSO protein; structura 82.1 0.76 2.6E-05 40.8 3.0 52 493-546 34-85 (155)
72 2kko_A Possible transcriptiona 81.9 0.75 2.6E-05 38.4 2.7 45 498-545 27-71 (108)
73 1z91_A Organic hydroperoxide r 81.8 0.84 2.9E-05 40.0 3.2 51 494-546 38-88 (147)
74 2bv6_A MGRA, HTH-type transcri 81.7 0.62 2.1E-05 40.7 2.2 51 494-546 35-85 (142)
75 1ub9_A Hypothetical protein PH 81.7 0.95 3.3E-05 36.7 3.3 48 495-544 15-62 (100)
76 1p6r_A Penicillinase repressor 81.6 1.2 4.1E-05 34.9 3.7 59 600-661 11-69 (82)
77 2e1c_A Putative HTH-type trans 81.6 1.2 4.2E-05 40.6 4.3 66 474-544 8-73 (171)
78 3lwf_A LIN1550 protein, putati 81.6 3.3 0.00011 37.2 7.1 58 498-562 31-89 (159)
79 3f3x_A Transcriptional regulat 81.5 0.85 2.9E-05 39.9 3.1 51 493-546 34-84 (144)
80 3jw4_A Transcriptional regulat 81.4 0.58 2E-05 41.3 2.0 51 494-546 39-91 (148)
81 4b8x_A SCO5413, possible MARR- 81.3 1 3.5E-05 39.9 3.5 51 494-546 33-85 (147)
82 2oqg_A Possible transcriptiona 81.0 1.1 3.6E-05 37.6 3.4 48 495-545 20-67 (114)
83 1sfu_A 34L protein; protein/Z- 81.0 2.6 8.9E-05 32.4 5.1 45 501-547 20-64 (75)
84 2v79_A DNA replication protein 80.9 1.1 3.9E-05 39.1 3.6 54 489-544 25-83 (135)
85 4aik_A Transcriptional regulat 80.8 2 6.8E-05 38.1 5.4 51 494-546 29-80 (151)
86 2xub_A DNA-directed RNA polyme 80.8 0.97 3.3E-05 49.4 3.9 133 501-653 24-162 (534)
87 2heo_A Z-DNA binding protein 1 80.6 0.83 2.9E-05 34.5 2.3 46 497-544 11-57 (67)
88 2jsc_A Transcriptional regulat 80.5 2.2 7.4E-05 36.2 5.2 49 495-546 20-68 (118)
89 2fbi_A Probable transcriptiona 80.5 1.2 4E-05 38.7 3.7 50 494-545 34-83 (142)
90 2pn6_A ST1022, 150AA long hypo 80.3 2 7E-05 37.9 5.3 49 495-545 2-50 (150)
91 2obp_A Putative DNA-binding pr 80.3 1.7 5.7E-05 35.5 4.1 51 493-545 13-69 (96)
92 3nqo_A MARR-family transcripti 80.1 1.2 4.1E-05 41.3 3.8 51 494-546 39-91 (189)
93 3t8r_A Staphylococcus aureus C 79.8 3.6 0.00012 36.2 6.6 57 499-562 16-73 (143)
94 2w25_A Probable transcriptiona 79.8 1.9 6.5E-05 38.2 4.8 49 494-544 5-53 (150)
95 2k4b_A Transcriptional regulat 78.9 0.44 1.5E-05 39.3 0.2 61 599-662 36-96 (99)
96 2fxa_A Protease production reg 78.8 1.2 4.2E-05 41.9 3.5 51 494-546 46-96 (207)
97 2vn2_A DNAD, chromosome replic 78.6 2 7E-05 37.0 4.5 54 491-546 27-85 (128)
98 3kp7_A Transcriptional regulat 78.6 1.1 3.7E-05 39.6 2.8 49 493-544 35-83 (151)
99 2y75_A HTH-type transcriptiona 78.5 4.4 0.00015 34.7 6.7 48 508-562 24-71 (129)
100 3boq_A Transcriptional regulat 78.0 0.99 3.4E-05 40.3 2.4 51 494-546 45-96 (160)
101 2cfx_A HTH-type transcriptiona 77.5 2.5 8.5E-05 37.2 4.9 49 494-544 3-51 (144)
102 2ia0_A Putative HTH-type trans 77.5 2.2 7.6E-05 38.8 4.6 54 489-544 10-63 (171)
103 3k69_A Putative transcription 77.5 2.1 7.3E-05 38.6 4.5 58 498-562 16-73 (162)
104 2wte_A CSA3; antiviral protein 76.9 1.9 6.4E-05 41.9 4.1 51 493-545 149-199 (244)
105 3f6o_A Probable transcriptiona 76.5 1.8 6.1E-05 36.7 3.5 49 495-546 17-65 (118)
106 2cg4_A Regulatory protein ASNC 75.9 2.7 9.2E-05 37.3 4.6 49 494-544 6-54 (152)
107 1i1g_A Transcriptional regulat 75.8 1.9 6.5E-05 37.6 3.6 49 495-545 3-51 (141)
108 2xrn_A HTH-type transcriptiona 75.2 3.5 0.00012 39.8 5.7 55 500-562 10-65 (241)
109 2dbb_A Putative HTH-type trans 74.9 2.9 0.0001 36.9 4.6 49 494-544 7-55 (151)
110 1ylf_A RRF2 family protein; st 74.8 4.7 0.00016 35.6 5.9 57 498-562 18-74 (149)
111 2l02_A Uncharacterized protein 74.6 5.1 0.00017 31.3 5.1 37 500-536 12-48 (82)
112 2zkz_A Transcriptional repress 74.5 2 6.9E-05 35.1 3.2 48 495-545 26-73 (99)
113 1sd4_A Penicillinase repressor 74.1 1.8 6E-05 36.9 2.8 51 493-545 7-61 (126)
114 2cyy_A Putative HTH-type trans 73.8 2.9 9.9E-05 37.0 4.3 49 494-544 5-53 (151)
115 1bby_A RAP30; average structur 73.8 5.8 0.0002 30.0 5.1 57 498-564 10-66 (69)
116 2g9w_A Conserved hypothetical 73.8 3.5 0.00012 35.9 4.7 50 494-545 7-61 (138)
117 2p5v_A Transcriptional regulat 73.1 3.7 0.00013 36.9 4.8 49 494-544 8-56 (162)
118 3r4k_A Transcriptional regulat 73.0 2.7 9.3E-05 41.1 4.2 56 500-563 10-66 (260)
119 4fx0_A Probable transcriptiona 72.7 3.7 0.00013 36.2 4.7 48 494-543 31-83 (148)
120 2yu3_A DNA-directed RNA polyme 72.4 5.2 0.00018 32.4 5.0 53 492-546 33-87 (95)
121 1r1t_A Transcriptional repress 72.4 4.2 0.00014 34.6 4.8 48 495-545 45-92 (122)
122 2lkp_A Transcriptional regulat 72.2 3.8 0.00013 34.5 4.5 47 495-544 31-77 (119)
123 1okr_A MECI, methicillin resis 71.7 2 7E-05 36.3 2.7 51 493-545 7-61 (123)
124 1xn7_A Hypothetical protein YH 70.1 4.2 0.00014 31.7 3.9 44 602-651 6-49 (78)
125 1xd7_A YWNA; structural genomi 69.6 5.7 0.0002 34.9 5.2 55 498-562 13-67 (145)
126 2pg4_A Uncharacterized protein 69.0 3.7 0.00013 33.0 3.5 44 498-543 17-62 (95)
127 1p4x_A Staphylococcal accessor 68.4 3.8 0.00013 39.8 4.1 51 494-546 156-208 (250)
128 1tbx_A ORF F-93, hypothetical 67.9 5.3 0.00018 32.2 4.3 57 600-658 10-66 (99)
129 3u2r_A Regulatory protein MARR 67.7 2.5 8.6E-05 38.0 2.5 51 494-546 44-96 (168)
130 3i4p_A Transcriptional regulat 67.1 6.8 0.00023 35.1 5.3 46 497-544 4-49 (162)
131 1qgp_A Protein (double strande 67.1 4.6 0.00016 31.3 3.5 52 600-657 16-70 (77)
132 1q1h_A TFE, transcription fact 67.0 4.6 0.00016 33.4 3.8 43 501-545 23-66 (110)
133 1sd4_A Penicillinase repressor 66.8 3.1 0.00011 35.3 2.8 59 600-661 12-70 (126)
134 2k4b_A Transcriptional regulat 66.1 1.1 3.6E-05 37.0 -0.4 52 493-546 32-87 (99)
135 1hsj_A Fusion protein consisti 65.5 4.3 0.00015 43.5 4.2 53 492-546 400-454 (487)
136 3f6v_A Possible transcriptiona 65.4 3.9 0.00013 36.3 3.2 48 495-545 57-104 (151)
137 1mkm_A ICLR transcriptional re 65.2 7.7 0.00026 37.5 5.6 55 499-562 11-66 (249)
138 3mq0_A Transcriptional repress 64.8 4.8 0.00016 39.7 4.0 54 500-562 34-88 (275)
139 2k02_A Ferrous iron transport 64.5 4.6 0.00016 32.2 3.1 45 602-652 6-50 (87)
140 2g9w_A Conserved hypothetical 63.6 4.8 0.00016 35.0 3.4 59 599-660 10-69 (138)
141 2fu4_A Ferric uptake regulatio 63.1 9.7 0.00033 29.5 4.8 59 601-660 20-80 (83)
142 2o0y_A Transcriptional regulat 63.1 7.4 0.00025 38.0 5.0 54 500-562 27-81 (260)
143 3b73_A PHIH1 repressor-like pr 62.9 5.8 0.0002 33.2 3.6 50 494-545 11-62 (111)
144 2jt1_A PEFI protein; solution 62.9 6.2 0.00021 30.6 3.5 56 595-656 5-62 (77)
145 2hzt_A Putative HTH-type trans 62.6 9.1 0.00031 31.5 4.8 46 497-545 15-61 (107)
146 2x4h_A Hypothetical protein SS 62.2 8.1 0.00028 33.3 4.7 52 492-545 9-64 (139)
147 1qbj_A Protein (double-strande 62.2 8.7 0.0003 30.1 4.3 52 600-657 12-66 (81)
148 3r0a_A Putative transcriptiona 61.9 6.2 0.00021 33.6 3.7 48 598-651 26-75 (123)
149 1p4x_A Staphylococcal accessor 61.8 3.4 0.00012 40.2 2.2 52 493-546 31-84 (250)
150 1fse_A GERE; helix-turn-helix 61.4 14 0.00048 27.6 5.4 41 493-535 11-51 (74)
151 1uly_A Hypothetical protein PH 61.3 11 0.00037 34.9 5.5 49 494-545 18-66 (192)
152 2p5k_A Arginine repressor; DNA 61.2 11 0.00037 27.4 4.6 37 498-534 7-48 (64)
153 1on2_A Transcriptional regulat 60.8 5.5 0.00019 34.5 3.3 41 503-545 15-55 (142)
154 2qvo_A Uncharacterized protein 60.4 4.5 0.00015 32.5 2.4 47 494-542 10-60 (95)
155 2fbk_A Transcriptional regulat 60.1 2.4 8.1E-05 38.8 0.8 51 494-546 67-120 (181)
156 1z7u_A Hypothetical protein EF 59.6 7.1 0.00024 32.5 3.6 47 496-545 22-69 (112)
157 4a5n_A Uncharacterized HTH-typ 59.4 11 0.00037 32.6 4.8 46 497-545 27-73 (131)
158 3df8_A Possible HXLR family tr 59.3 9.4 0.00032 31.7 4.3 48 495-545 26-76 (111)
159 1je8_A Nitrate/nitrite respons 58.1 16 0.00055 28.4 5.3 41 493-535 21-61 (82)
160 2htj_A P fimbrial regulatory p 57.5 15 0.00052 28.3 5.1 44 602-651 4-47 (81)
161 2ia2_A Putative transcriptiona 57.0 9.7 0.00033 37.2 4.7 54 500-563 25-79 (265)
162 2g7u_A Transcriptional regulat 56.2 11 0.00039 36.5 5.0 55 499-563 17-72 (257)
163 3cuq_B Vacuolar protein-sortin 55.8 27 0.00094 32.9 7.4 85 444-546 113-202 (218)
164 2fe3_A Peroxide operon regulat 55.5 20 0.0007 31.2 6.1 65 492-561 18-88 (145)
165 1yyv_A Putative transcriptiona 55.0 12 0.00042 32.1 4.5 48 495-545 34-82 (131)
166 1okr_A MECI, methicillin resis 54.8 6.5 0.00022 33.0 2.6 57 602-661 14-70 (123)
167 2l01_A Uncharacterized protein 54.5 20 0.00067 27.6 4.8 37 500-536 14-51 (77)
168 1x3u_A Transcriptional regulat 52.9 20 0.0007 27.1 5.1 40 494-535 17-56 (79)
169 3i4p_A Transcriptional regulat 52.6 17 0.00058 32.4 5.2 47 599-651 4-50 (162)
170 2qlz_A Transcription factor PF 52.5 12 0.0004 35.9 4.2 44 499-545 168-211 (232)
171 2fsw_A PG_0823 protein; alpha- 52.4 14 0.00049 30.2 4.3 44 499-545 28-72 (107)
172 3ulq_B Transcriptional regulat 52.4 22 0.00074 28.3 5.2 43 491-535 27-69 (90)
173 3cuo_A Uncharacterized HTH-typ 51.7 17 0.00057 28.9 4.6 55 598-658 24-78 (99)
174 1mzb_A Ferric uptake regulatio 51.7 27 0.00092 30.0 6.2 65 492-561 14-85 (136)
175 2f2e_A PA1607; transcription f 51.6 17 0.00057 31.9 4.9 47 497-546 25-71 (146)
176 3c57_A Two component transcrip 51.6 18 0.00063 28.9 4.7 41 493-535 27-67 (95)
177 2xub_A DNA-directed RNA polyme 51.1 53 0.0018 35.6 9.8 117 510-651 287-407 (534)
178 2p4w_A Transcriptional regulat 50.6 11 0.00039 35.1 3.8 48 495-545 14-61 (202)
179 2v79_A DNA replication protein 49.8 12 0.00041 32.5 3.5 24 627-650 60-83 (135)
180 3omy_A Protein TRAM; DNA bindi 48.9 13 0.00043 26.1 2.7 40 91-131 8-49 (52)
181 2p7v_B Sigma-70, RNA polymeras 47.2 34 0.0011 25.2 5.3 41 494-534 6-49 (68)
182 1r7j_A Conserved hypothetical 46.9 22 0.00075 28.6 4.5 43 499-545 11-53 (95)
183 3kp7_A Transcriptional regulat 46.9 13 0.00043 32.4 3.3 51 599-656 39-93 (151)
184 1v4r_A Transcriptional repress 44.7 9.7 0.00033 31.0 2.0 41 504-546 28-69 (102)
185 4a0z_A Transcription factor FA 44.2 18 0.00063 33.3 4.1 46 497-544 13-58 (190)
186 2o03_A Probable zinc uptake re 43.0 23 0.0008 30.2 4.4 51 494-546 9-65 (131)
187 1tty_A Sigma-A, RNA polymerase 42.2 36 0.0012 26.5 5.1 41 494-534 19-62 (87)
188 1tc3_C Protein (TC3 transposas 42.0 38 0.0013 22.3 4.7 33 500-534 13-45 (51)
189 3t72_q RNA polymerase sigma fa 41.7 34 0.0012 27.7 4.9 39 494-532 20-61 (99)
190 2jpc_A SSRB; DNA binding prote 41.6 25 0.00086 25.0 3.7 34 500-535 5-38 (61)
191 2qww_A Transcriptional regulat 41.3 25 0.00086 30.4 4.4 46 599-650 42-87 (154)
192 2xig_A Ferric uptake regulatio 40.8 28 0.00094 30.6 4.5 52 492-545 23-80 (150)
193 2rnj_A Response regulator prot 40.8 19 0.00066 28.4 3.2 40 494-535 30-69 (91)
194 1dp3_A TRAM protein; helix-loo 40.8 9.5 0.00033 27.1 1.1 42 93-134 9-53 (55)
195 3k2z_A LEXA repressor; winged 40.5 29 0.001 31.9 4.9 52 494-547 3-59 (196)
196 3jth_A Transcription activator 40.3 36 0.0012 27.0 4.9 54 600-660 25-78 (98)
197 3hrs_A Metalloregulator SCAR; 39.7 26 0.00088 32.9 4.4 44 501-546 11-54 (214)
198 2lnb_A Z-DNA-binding protein 1 39.7 19 0.00065 27.7 2.7 36 500-535 23-59 (80)
199 2h09_A Transcriptional regulat 39.6 23 0.0008 30.9 3.9 40 504-545 48-87 (155)
200 1sfx_A Conserved hypothetical 39.5 18 0.00063 29.0 3.0 48 599-652 21-68 (109)
201 2w57_A Ferric uptake regulatio 38.8 25 0.00086 30.9 3.9 52 492-545 13-71 (150)
202 3f8b_A Transcriptional regulat 38.7 57 0.002 27.1 6.0 56 595-651 9-66 (116)
203 1oks_A RNA polymerase alpha su 38.6 33 0.0011 23.9 3.5 44 358-401 5-48 (56)
204 2x48_A CAG38821; archeal virus 38.6 84 0.0029 21.6 6.1 24 509-532 30-53 (55)
205 1bia_A BIRA bifunctional prote 38.3 35 0.0012 34.3 5.4 46 496-543 5-50 (321)
206 1ku3_A Sigma factor SIGA; heli 37.8 46 0.0016 24.8 4.8 39 495-533 12-53 (73)
207 3k0l_A Repressor protein; heli 37.6 41 0.0014 29.4 5.3 49 598-652 46-94 (162)
208 2b0l_A GTP-sensing transcripti 37.4 15 0.00051 30.1 2.0 44 501-546 33-77 (102)
209 3tgn_A ADC operon repressor AD 36.7 38 0.0013 28.8 4.8 46 600-652 40-85 (146)
210 2pn6_A ST1022, 150AA long hypo 36.7 42 0.0014 29.1 5.1 47 599-651 4-50 (150)
211 1i1g_A Transcriptional regulat 36.5 33 0.0011 29.4 4.3 48 599-652 5-52 (141)
212 1p4w_A RCSB; solution structur 35.9 41 0.0014 27.2 4.5 41 493-535 34-74 (99)
213 3hug_A RNA polymerase sigma fa 35.4 52 0.0018 25.8 5.0 39 494-534 38-77 (92)
214 3to7_A Histone acetyltransfera 35.3 29 0.001 33.6 3.9 38 498-535 195-233 (276)
215 3oop_A LIN2960 protein; protei 34.9 28 0.00097 29.7 3.6 46 601-652 40-85 (143)
216 2cfx_A HTH-type transcriptiona 34.9 36 0.0012 29.4 4.3 47 599-651 6-52 (144)
217 2dk5_A DNA-directed RNA polyme 34.6 36 0.0012 27.2 3.8 44 601-650 23-68 (91)
218 1x19_A CRTF-related protein; m 33.7 45 0.0015 33.7 5.5 50 501-561 56-105 (359)
219 3cdh_A Transcriptional regulat 33.6 42 0.0014 29.0 4.6 49 598-652 43-91 (155)
220 2xvc_A ESCRT-III, SSO0910; cel 33.6 32 0.0011 24.7 2.9 36 506-543 21-56 (59)
221 2vn2_A DNAD, chromosome replic 33.5 26 0.00087 29.9 3.0 26 627-652 60-85 (128)
222 3dp7_A SAM-dependent methyltra 33.3 38 0.0013 34.5 4.8 51 501-561 40-91 (363)
223 1ku9_A Hypothetical protein MJ 33.3 44 0.0015 28.4 4.7 51 601-657 29-82 (152)
224 3hsr_A HTH-type transcriptiona 33.3 32 0.0011 29.3 3.7 49 598-652 36-84 (140)
225 2o8x_A Probable RNA polymerase 33.2 62 0.0021 23.4 4.9 39 494-534 16-55 (70)
226 1oyi_A Double-stranded RNA-bin 33.2 35 0.0012 26.7 3.4 50 601-657 20-69 (82)
227 1jgs_A Multiple antibiotic res 33.2 48 0.0016 27.8 4.8 46 600-651 36-81 (138)
228 2ek5_A Predicted transcription 33.1 42 0.0014 28.6 4.3 40 505-546 22-62 (129)
229 2p5v_A Transcriptional regulat 32.9 39 0.0013 29.9 4.3 47 599-651 11-57 (162)
230 2e1c_A Putative HTH-type trans 32.8 40 0.0014 30.3 4.4 47 599-651 28-74 (171)
231 2ia0_A Putative HTH-type trans 32.7 39 0.0013 30.3 4.3 47 599-651 18-64 (171)
232 2cg4_A Regulatory protein ASNC 32.6 39 0.0013 29.4 4.2 46 599-650 9-54 (152)
233 1tw3_A COMT, carminomycin 4-O- 32.6 38 0.0013 34.2 4.7 51 501-561 44-94 (360)
234 2r3s_A Uncharacterized protein 31.8 41 0.0014 33.5 4.7 49 502-561 32-80 (335)
235 3eyy_A Putative iron uptake re 31.8 31 0.0011 30.0 3.4 52 492-545 15-71 (145)
236 1j5y_A Transcriptional regulat 31.8 33 0.0011 31.2 3.7 45 498-544 23-69 (187)
237 2ip2_A Probable phenazine-spec 31.8 52 0.0018 32.8 5.5 43 509-560 40-82 (334)
238 3bro_A Transcriptional regulat 31.6 59 0.002 27.3 5.2 47 600-652 36-84 (141)
239 1lj9_A Transcriptional regulat 31.6 48 0.0016 28.1 4.6 47 600-652 31-77 (144)
240 1z6r_A MLC protein; transcript 31.1 62 0.0021 33.4 6.1 64 499-564 19-85 (406)
241 2nyx_A Probable transcriptiona 30.9 38 0.0013 29.9 3.9 46 600-651 47-92 (168)
242 2fa5_A Transcriptional regulat 30.8 43 0.0015 29.1 4.2 48 599-652 50-97 (162)
243 3tqn_A Transcriptional regulat 30.4 44 0.0015 27.6 3.9 40 505-546 27-67 (113)
244 3cjn_A Transcriptional regulat 30.4 47 0.0016 28.9 4.4 48 599-652 53-100 (162)
245 2ozu_A Histone acetyltransfera 30.4 37 0.0013 33.0 3.7 29 507-535 211-239 (284)
246 2eth_A Transcriptional regulat 30.3 45 0.0015 28.8 4.2 47 599-651 45-91 (154)
247 2dbb_A Putative HTH-type trans 30.3 38 0.0013 29.4 3.7 47 599-651 10-56 (151)
248 2w25_A Probable transcriptiona 30.1 46 0.0016 28.8 4.3 47 599-651 8-54 (150)
249 3bpv_A Transcriptional regulat 30.0 37 0.0013 28.6 3.5 48 599-652 30-77 (138)
250 2cyy_A Putative HTH-type trans 29.9 48 0.0017 28.8 4.3 47 599-651 8-54 (151)
251 2ou2_A Histone acetyltransfera 29.6 48 0.0016 32.2 4.4 26 510-535 212-237 (280)
252 3i53_A O-methyltransferase; CO 29.5 67 0.0023 31.9 5.9 42 501-545 30-71 (332)
253 2f2e_A PA1607; transcription f 29.4 56 0.0019 28.4 4.6 51 602-660 28-80 (146)
254 3bja_A Transcriptional regulat 29.3 34 0.0012 28.8 3.1 46 600-651 35-80 (139)
255 3g3z_A NMB1585, transcriptiona 29.3 49 0.0017 28.1 4.3 48 599-652 32-79 (145)
256 3by6_A Predicted transcription 29.1 36 0.0012 28.9 3.2 40 505-546 29-69 (126)
257 1qzz_A RDMB, aclacinomycin-10- 29.1 51 0.0017 33.4 5.0 42 501-545 41-82 (374)
258 2fbh_A Transcriptional regulat 28.8 60 0.002 27.4 4.7 48 599-652 38-86 (146)
259 4hbl_A Transcriptional regulat 28.8 37 0.0013 29.2 3.3 48 599-652 42-89 (149)
260 2hzt_A Putative HTH-type trans 28.7 55 0.0019 26.5 4.2 54 601-660 17-72 (107)
261 3ech_A MEXR, multidrug resista 28.5 40 0.0014 28.6 3.5 49 598-652 37-85 (142)
262 2fsw_A PG_0823 protein; alpha- 28.1 49 0.0017 26.8 3.8 53 602-660 29-83 (107)
263 3s2w_A Transcriptional regulat 28.1 38 0.0013 29.5 3.3 48 599-652 51-98 (159)
264 2gxg_A 146AA long hypothetical 27.3 85 0.0029 26.5 5.5 47 599-652 38-84 (146)
265 3mcz_A O-methyltransferase; ad 27.2 56 0.0019 32.8 4.8 34 510-545 56-89 (352)
266 3neu_A LIN1836 protein; struct 27.0 50 0.0017 27.8 3.8 39 506-546 32-71 (125)
267 2w48_A Sorbitol operon regulat 26.7 55 0.0019 32.6 4.6 44 500-545 11-55 (315)
268 1u2w_A CADC repressor, cadmium 26.7 60 0.0021 27.1 4.2 54 600-659 44-97 (122)
269 2rdp_A Putative transcriptiona 26.7 63 0.0021 27.6 4.5 44 602-651 46-89 (150)
270 2qlz_A Transcription factor PF 26.5 23 0.00078 33.8 1.6 47 495-544 11-57 (232)
271 3eyy_A Putative iron uptake re 26.3 43 0.0015 29.1 3.3 50 603-653 24-73 (145)
272 2pex_A Transcriptional regulat 26.3 49 0.0017 28.5 3.7 46 601-652 50-95 (153)
273 2pg4_A Uncharacterized protein 26.3 33 0.0011 27.1 2.3 45 606-656 23-69 (95)
274 3nrv_A Putative transcriptiona 26.2 59 0.002 27.7 4.2 48 599-652 41-88 (148)
275 3bj6_A Transcriptional regulat 26.2 63 0.0021 27.6 4.4 47 600-652 42-88 (152)
276 3k2z_A LEXA repressor; winged 25.7 71 0.0024 29.2 4.9 56 595-656 6-62 (196)
277 3bdd_A Regulatory protein MARR 25.7 55 0.0019 27.5 3.9 48 599-652 32-79 (142)
278 2pq8_A Probable histone acetyl 25.5 39 0.0013 32.8 2.9 37 499-535 196-233 (278)
279 2frh_A SARA, staphylococcal ac 25.4 41 0.0014 28.3 2.8 45 601-651 40-86 (127)
280 1z05_A Transcriptional regulat 25.4 67 0.0023 33.5 5.1 63 499-563 42-107 (429)
281 3c7j_A Transcriptional regulat 25.3 49 0.0017 31.4 3.7 42 504-547 43-84 (237)
282 3pqk_A Biofilm growth-associat 25.3 85 0.0029 24.9 4.8 53 599-658 24-76 (102)
283 3mwm_A ZUR, putative metal upt 25.3 66 0.0022 27.7 4.2 65 492-561 10-80 (139)
284 3mzy_A RNA polymerase sigma-H 25.1 69 0.0024 27.6 4.5 38 494-533 110-147 (164)
285 2oqg_A Possible transcriptiona 24.7 40 0.0014 27.4 2.7 50 599-655 22-71 (114)
286 3deu_A Transcriptional regulat 24.6 56 0.0019 28.8 3.8 47 600-652 55-102 (166)
287 2kko_A Possible transcriptiona 24.5 90 0.0031 25.3 4.8 54 598-658 25-78 (108)
288 1mzb_A Ferric uptake regulatio 24.2 1.2E+02 0.004 25.9 5.7 52 601-653 21-74 (136)
289 2o0m_A Transcriptional regulat 24.0 16 0.00056 37.1 0.0 52 492-545 16-67 (345)
290 2bv6_A MGRA, HTH-type transcri 23.6 38 0.0013 28.8 2.3 49 599-653 38-86 (142)
291 2nnn_A Probable transcriptiona 23.5 42 0.0014 28.3 2.6 44 603-652 43-86 (140)
292 1jko_C HIN recombinase, DNA-in 23.1 89 0.0031 20.7 3.9 31 501-533 14-44 (52)
293 1b4a_A Arginine repressor; hel 23.0 1.1E+02 0.0039 26.7 5.3 58 599-661 6-63 (149)
294 1ub9_A Hypothetical protein PH 23.0 35 0.0012 26.9 1.8 47 599-651 17-63 (100)
295 2p5k_A Arginine repressor; DNA 23.0 1E+02 0.0035 21.9 4.4 53 603-660 10-62 (64)
296 3f2g_A Alkylmercury lyase; MER 23.0 1E+02 0.0034 29.0 5.2 38 498-535 24-61 (220)
297 1xsv_A Hypothetical UPF0122 pr 22.5 1.1E+02 0.0038 25.1 5.0 40 494-534 26-65 (113)
298 3lst_A CALO1 methyltransferase 22.4 71 0.0024 32.1 4.5 34 509-544 54-87 (348)
299 3cuq_A Vacuolar-sorting protei 22.2 74 0.0025 30.2 4.2 51 494-546 152-202 (234)
300 1ufm_A COP9 complex subunit 4; 22.2 1.1E+02 0.0037 23.9 4.5 41 496-536 16-56 (84)
301 1l9l_A Granulysin; saposin fol 21.8 1.2E+02 0.004 23.0 4.5 57 308-368 7-65 (74)
302 3chm_A COP9 signalosome comple 21.8 56 0.0019 29.4 3.1 44 498-543 97-142 (169)
303 3boq_A Transcriptional regulat 21.6 42 0.0015 29.1 2.3 48 599-652 48-96 (160)
304 2fe3_A Peroxide operon regulat 21.6 1.1E+02 0.0039 26.3 5.1 60 600-660 24-84 (145)
305 3c18_A Nucleotidyltransferase- 21.6 80 0.0027 30.9 4.3 64 592-659 216-283 (290)
306 4a5n_A Uncharacterized HTH-typ 21.5 89 0.003 26.7 4.2 54 601-660 29-84 (131)
307 3b73_A PHIH1 repressor-like pr 21.4 82 0.0028 26.1 3.8 48 599-652 14-63 (111)
308 1r7j_A Conserved hypothetical 21.2 1.4E+02 0.0047 23.7 5.1 47 599-653 9-55 (95)
309 3clo_A Transcriptional regulat 21.1 81 0.0028 30.2 4.4 41 493-535 197-237 (258)
310 3u1d_A Uncharacterized protein 21.1 1.2E+02 0.0041 26.6 5.0 46 498-545 31-79 (151)
311 1r1u_A CZRA, repressor protein 21.0 74 0.0025 25.7 3.5 53 599-658 27-79 (106)
312 3eco_A MEPR; mutlidrug efflux 20.9 64 0.0022 27.1 3.3 48 599-652 32-81 (139)
313 3ke2_A Uncharacterized protein 20.9 2.3E+02 0.0078 23.5 6.2 39 502-543 26-64 (117)
314 3on0_A Protein TRAM; DNA bindi 20.8 1.7E+02 0.0058 24.6 5.4 40 91-131 8-49 (127)
315 1nkl_A NK-lysin; saposin fold, 20.8 1.1E+02 0.0037 23.3 4.2 57 309-368 8-65 (78)
316 1s7o_A Hypothetical UPF0122 pr 20.7 1E+02 0.0036 25.4 4.4 40 494-535 23-63 (113)
317 4ham_A LMO2241 protein; struct 20.7 79 0.0027 26.9 3.8 40 505-546 32-72 (134)
318 3mwm_A ZUR, putative metal upt 20.6 1.5E+02 0.0053 25.2 5.7 52 601-653 17-69 (139)
319 2jsc_A Transcriptional regulat 20.3 96 0.0033 25.6 4.2 52 600-658 23-74 (118)
320 3nqo_A MARR-family transcripti 20.1 1.1E+02 0.0036 27.6 4.8 47 600-652 43-91 (189)
No 1
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=1.2e-131 Score=1139.89 Aligned_cols=661 Identities=60% Similarity=0.970 Sum_probs=634.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCcccHHHHHHHH
Q 006074 1 MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQL 80 (662)
Q Consensus 1 ~ge~LY~~~~~~l~~~l~~~~~~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~~~~~i~~l~l~~ 80 (662)
+|+.||+++++.+++|+...+..+...+.+++.||..|..+|.+|+.++.+|+++|+||||+|+.++++.++|+++|+.+
T Consensus 98 ~~~~LY~~l~~~~~~~l~~~~~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~l 177 (759)
T 2hye_C 98 VSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLEL 177 (759)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHH
Confidence 58999999999999999998877755333335899999999999999999999999999999999987679999999999
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHhCCCcCChHHHHHHHHHHhhhhccHHhhhHHHHHHHHHHHHHHHHHHhhcCChh
Q 006074 81 FRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVP 160 (662)
Q Consensus 81 f~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~~ik~~i~ml~~l~~Y~~~fE~~~l~~t~~yY~~~s~~~~~~~~~~ 160 (662)
|+++|+.++.+.++++++++++|+++|.|+.+|+.+|+++++||++|++|.+.||++||++|.+||+.+++.|+++.+++
T Consensus 178 fr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge~id~~llk~vi~ml~~L~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~ 257 (759)
T 2hye_C 178 FRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVP 257 (759)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 99999987789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccCCHHHHHHHHHHhccc-chHHHHH
Q 006074 161 DYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLR 239 (662)
Q Consensus 161 ~Yl~~v~~~i~eE~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~il~~gl~~ll~~~~~~~L~~ly~l~~~~-~~l~~l~ 239 (662)
+|+++|+.++++|.+||..||+++|.++|.++|+++||.+|++.++.+|+..||.+++.++|++||+|++++ ++++.++
T Consensus 258 ~Yl~~~e~rl~eE~~r~~~yL~~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~ 337 (759)
T 2hye_C 258 EYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALL 337 (759)
T ss_dssp HHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHHHHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCHHHHHHHHHHHccCcchHHHHH
Confidence 999999999999999999999999999999999999999999999988999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhchhccCccchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHh
Q 006074 240 QALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKL 319 (662)
Q Consensus 240 ~~~~~~i~~~g~~~~~~~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~~~~~~~~af~~~ln~~~~~~~e~La~y~d~~l 319 (662)
..|++||++.|.+++.+.+++..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.++.++||+||+|||.+|
T Consensus 338 ~~~~~~I~~~g~~iv~~~~~~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~~~E~la~y~D~~L 417 (759)
T 2hye_C 338 QHWSEYIKTFGTAIVINPEKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKL 417 (759)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Confidence 99999999999999988777789999999999999999999999999999999999999999987789999999999999
Q ss_pred hcCCCCCCHHHHHhhhhccceeeEeccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhccchhHhHHHHHhh
Q 006074 320 RAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKD 399 (662)
Q Consensus 320 k~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D 399 (662)
|+|.++.+++|++..+++++.+|+|+++||+|+.+|+++||+|||.+++++.|.|+.||++||.+||.+||++|++||+|
T Consensus 418 k~~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~D 497 (759)
T 2hye_C 418 RAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKD 497 (759)
T ss_dssp SSCGGGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 99988888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCccEEEEEeecCCCCCCCCCCccCChhHHHHHHHHHHHHhhcCCCeeeEeccCCceE
Q 006074 400 IELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHC 479 (662)
Q Consensus 400 ~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~ 479 (662)
+..|++++..|++++.+ .+.+.+++|+|.|||+++||..+..++.+|++|+.+++.|++||..+|+||+|+|.+++|+|
T Consensus 498 i~~S~~l~~~f~~~~~~-~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~ 576 (759)
T 2hye_C 498 MELSKDIMVHFKQHMQN-QSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHA 576 (759)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEE
T ss_pred HHHHHHHHHHHHHHHhc-ccCCCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcE
Confidence 99999999999998754 33345789999999999999998889999999999999999999999999999999999999
Q ss_pred EEEEEecCceEEEEecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEE
Q 006074 480 VLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVF 559 (662)
Q Consensus 480 ~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~ 559 (662)
+|+++|++|+++++||++||+||++||+.+++|++||++.||+|+++|+++|.+|++++.+||.++|+++++.+++.|.+
T Consensus 577 ~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~l 656 (759)
T 2hye_C 577 VLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIF 656 (759)
T ss_dssp EEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEE
T ss_pred EEEEEeCCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred ecCCCCCcceEEecccccccchhhhhhhhHHHHHhhHhhhhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHH
Q 006074 560 NEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRI 639 (662)
Q Consensus 560 N~~f~~~~~~i~i~~~~~~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~I 639 (662)
|.+|+++.+|++|+.++.+++.+|++.+.+.+.+||++.||||||||||++|+|+|++|+.+|+++++|+|++.+||+||
T Consensus 657 N~~f~~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~F~p~~~~IKk~I 736 (759)
T 2hye_C 657 NGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRI 736 (759)
T ss_dssp CCCCCCSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred eccccCCceEEEeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999887777778888888999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhccccccCCCCCceeecC
Q 006074 640 ESLIDREYLERDKNNPQIYNYLA 662 (662)
Q Consensus 640 e~Liereyi~r~~~~~~~y~Yia 662 (662)
|+||+||||+|+++|+++|+|+|
T Consensus 737 e~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 737 ESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHHHHTTSCBCCSSCTTEEECCC
T ss_pred HHHhcccceecCCCCCCeeEecC
Confidence 99999999999999999999998
No 2
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=5.7e-128 Score=1109.60 Aligned_cols=653 Identities=33% Similarity=0.560 Sum_probs=616.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC-----CcccHHH
Q 006074 1 MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTP-----NVRSLWD 75 (662)
Q Consensus 1 ~ge~LY~~~~~~l~~~l~~~~~~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~-----~~~~i~~ 75 (662)
+|+.||+++++++++|+..++.++....+ ++||..|.++|.+|+.++.+|+++|+||||+||.+++ +.++|++
T Consensus 68 ~g~~LY~~l~~~l~~~l~~~~~~~~~~~~--e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~ 145 (760)
T 1ldj_A 68 VGLELYKRLKEFLKNYLTNLLKDGEDLMD--ESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYS 145 (760)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHTTCSCTT--TTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHH
Confidence 47899999999999999998876544332 6899999999999999999999999999999999874 2679999
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCcCChHHHHHHHHHHhhh--------------hccHHhhhHHHHHH
Q 006074 76 MGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTAL--------------GIYSESFEKPFLEC 141 (662)
Q Consensus 76 l~l~~f~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~~ik~~i~ml~~l--------------~~Y~~~fE~~~l~~ 141 (662)
+|+.+||++||. +++++++++++++|+++|.|+.+|+.+|+++++||++| ++|.+.||++||++
T Consensus 146 lgL~~fr~~vf~--~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~ 223 (760)
T 1ldj_A 146 LALVTWRDCLFR--PLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLAD 223 (760)
T ss_dssp HHHHTTHHHHTT--TTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHH
Confidence 999999999996 69999999999999999999999999999999999985 68999999999999
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccCCHHH
Q 006074 142 TSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTED 221 (662)
Q Consensus 142 t~~yY~~~s~~~~~~~~~~~Yl~~v~~~i~eE~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~il~~gl~~ll~~~~~~~ 221 (662)
|.+||+.+++.|+++.++++||++|+.++++|.+||..||+++|.+++.++|+++||.+|.+.|+ +|+..||++++.+|
T Consensus 224 t~~fY~~es~~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~-~~~~~ll~~~~~~d 302 (760)
T 1ldj_A 224 TERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH-TEFQNLLDADKNED 302 (760)
T ss_dssp HHHHHHHHHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH-HHHHHHHHSCCTTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876 69999999999999
Q ss_pred HHHHHHHhccc-chHHHHHHHHHHHHHHHhchhccCc-----cchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 006074 222 LQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDE-----EKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDA 295 (662)
Q Consensus 222 L~~ly~l~~~~-~~l~~l~~~~~~~i~~~g~~~~~~~-----~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~~~~~~~~a 295 (662)
|++||+||+++ ++++.|+..|++||++.|.+++.+. ..+..||+.|+++|++|+.++..||++|+.|..++++|
T Consensus 303 L~~my~L~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~a 382 (760)
T 1ldj_A 303 LGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKA 382 (760)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 99999999999 9999999999999999999998652 45689999999999999999999999999999999999
Q ss_pred HHHHhhcC--------CCCcHHHHHHHHHHHhhcCCCCCCHHHHHhhhhccceeeEeccChhHHHHHHHHHHHHHhcCCC
Q 006074 296 FEYLINLR--------QNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGK 367 (662)
Q Consensus 296 f~~~ln~~--------~~~~~e~La~y~d~~lk~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~ 367 (662)
|+.|+|.+ ..++||+||+|||.+||+|.++.++++++..+++++.||+|+++||+|+++|+++||+|||.++
T Consensus 383 f~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~ 462 (760)
T 1ldj_A 383 CGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQN 462 (760)
T ss_dssp HHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCccccccccccccHHHHHHHhHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999976 2478999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhccchhHhHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCccEEEEEeecCCCCCCCCCCccCC
Q 006074 368 SASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLP 447 (662)
Q Consensus 368 s~s~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~lP 447 (662)
+++.+.|+.||++||.+||.+||++|++||+|+..|++++..|+++..+ +...+++|+|.|||+++||..+..++.+|
T Consensus 463 s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~--~~~~~~~~~v~VLs~~~WP~~~~~~~~lP 540 (760)
T 1ldj_A 463 SASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTN--SEPLDLDFSIQVLSSGSWPFQQSCTFALP 540 (760)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCCCSSEEEEEEEETTTSCCCCCSCCCCC
T ss_pred CCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCCeeEEecCCCCCCCCCCCCCcCC
Confidence 9999999999999999999999999999999999999999999987653 12357999999999999999988899999
Q ss_pred hhHHHHHHHHHHHHhhcCCCeeeEeccCCceEEEEEEecCceEEEEecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHH
Q 006074 448 HELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKEL 527 (662)
Q Consensus 448 ~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l 527 (662)
++|+.+++.|++||..+|+||+|+|.|++|+|+|+++|++++++++||++||+||++||+.+++|+++|++.||||+++|
T Consensus 541 ~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l 620 (760)
T 1ldj_A 541 SELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDIL 620 (760)
T ss_dssp GGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHhhcCCccceecCC-----CCCCCCCCCeEEEecCCCCCcceEEecccccccchhhhhhhhHHHHHhhHhhhhhh
Q 006074 528 RRTLQSLACGKVRVLQKLP-----KGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAA 602 (662)
Q Consensus 528 ~~~L~~L~~~k~~iL~~~~-----~~~~~~~~~~~~~N~~f~~~~~~i~i~~~~~~~~~~e~~~~~~~~~~~r~~~i~A~ 602 (662)
+++|.+|+ +.+||.+.| +++++.+++.|++|.+|++++.||+|+.+..+++.+|.+.+.+.+.+||++.||||
T Consensus 621 ~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~Aa 698 (760)
T 1ldj_A 621 AQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAA 698 (760)
T ss_dssp HHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHhHheee
Confidence 99999999 899999665 78889999999999999999999999865555666777778889999999999999
Q ss_pred hhhhhcCCCCCChHHHHHHHHHhc--CCCCChhhHHHHHHhhhhhccccccCCCCCceeecC
Q 006074 603 IVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 662 (662)
Q Consensus 603 IVRimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 662 (662)
||||||+||+|+|++|+.+|++++ +|+|++.+||+|||+||+||||+|+++|+++|+|+|
T Consensus 699 IVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 699 IVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred ehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 999999999999999999999999 599999999999999999999999999999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=7.9e-81 Score=661.28 Aligned_cols=357 Identities=33% Similarity=0.511 Sum_probs=326.3
Q ss_pred CCcHHHHHHHHHHHhhcC--CCCCCHHHHHhhhhccceeeEeccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 006074 305 NRPAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLK 382 (662)
Q Consensus 305 ~~~~e~La~y~d~~lk~~--~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~Lk 382 (662)
.++||+||+|||.+||+| .++.++++++..|++++.||+|+++||+|+.+|+++||+|||.+++.+.|.|+.||++||
T Consensus 4 ~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kLK 83 (382)
T 3dpl_C 4 SKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLR 83 (382)
T ss_dssp CCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 478999999999999998 367889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcc--chhHhHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCccEEEEEeecCCCCCCC-CCCccCChhHHHHHHHHHH
Q 006074 383 TECGS--QFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYP-PMDVRLPHELNVYQDIFKE 459 (662)
Q Consensus 383 ~~~G~--~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~-~~~~~lP~~l~~~~~~f~~ 459 (662)
+||. +||++|++||+|+..|++++..|+++..+......+++|+|.|||+++||..+ ..++.+|++|+.+++.|++
T Consensus 84 -~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~~ 162 (382)
T 3dpl_C 84 -EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEE 162 (382)
T ss_dssp -HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHHH
T ss_pred -HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHHH
Confidence 9996 99999999999999999999999987654111123689999999999999985 5689999999999999999
Q ss_pred HHhhcCCCeeeEeccCCceEEEEEEecCceEEEEecHHHHHHHHHhcCC--CCCCHHHHHHHhCCCHHHHHHHhhHhhc-
Q 006074 460 FYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLAC- 536 (662)
Q Consensus 460 ~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~- 536 (662)
||..+|+||+|+|.|++|+|+|++++++|+++++||++||+||++||+. +++|++||++.|||++++|+++|++|++
T Consensus 163 fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~ 242 (382)
T 3dpl_C 163 FYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAF 242 (382)
T ss_dssp HHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_pred HHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999986 7999999999999999999999999987
Q ss_pred C--CccceecCCCC---CCCCCCCeEEEecCCCCC-----cceEEeccccc--ccchhhhhhhhHHHHHhhHhhhhhhhh
Q 006074 537 G--KVRVLQKLPKG---RDVEDDDSFVFNEGFTAP-----LYRIKVNAIQM--KETVEENTSTTERVFQDRQYQVDAAIV 604 (662)
Q Consensus 537 ~--k~~iL~~~~~~---~~~~~~~~~~~N~~f~~~-----~~~i~i~~~~~--~~~~~e~~~~~~~~~~~r~~~i~A~IV 604 (662)
| |.+||.++|++ +++.++|.|++|.+|+++ .+|++|+.++. .++..+.+++.+++.+||++.||||||
T Consensus 243 ~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaIV 322 (382)
T 3dpl_C 243 PKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAII 322 (382)
T ss_dssp TTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEEEe
Confidence 4 46799998863 678899999999999862 36778876532 234556667788999999999999999
Q ss_pred hhhcCCCCCChHHHHHHHHHhc--CCCCChhhHHHHHHhhhhhccccccCCCCCceeecC
Q 006074 605 RIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 662 (662)
Q Consensus 605 RimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 662 (662)
||||+||+|+|++|+.+|++++ +|.|++.+||+|||+|||||||+||++|+++|+|+|
T Consensus 323 RIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 323 QIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred hhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 9999999999999999999999 599999999999999999999999999999999998
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.7e-57 Score=484.25 Aligned_cols=315 Identities=35% Similarity=0.634 Sum_probs=283.5
Q ss_pred ChhHHHHHHHHHHHHHHH-HHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCcccHHHHHHH
Q 006074 1 MGGNLYQRIEKECEEHIS-AAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQ 79 (662)
Q Consensus 1 ~ge~LY~~~~~~l~~~l~-~~~~~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~~~~~i~~l~l~ 79 (662)
+|++||+++++.+++|+. .+...+.+..+ +.||+.|.++|.+|+.++.+|+++|+||||+|+.+++ .++|+++|+.
T Consensus 69 ~g~~LY~~l~~~~~~~l~~~v~~~l~~~~~--~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~-~~~I~~lgL~ 145 (410)
T 4ap2_B 69 HGEKLYTGLREVVTEHLINKVREDVLNSLN--NNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN-VENVYNLGLI 145 (410)
T ss_dssp CHHHHHHHHHHHHHHHHHHTHHHHHHTTTT--SSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTT-CCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCC-CCCHHHHHHH
Confidence 699999999999999999 45544444333 4799999999999999999999999999999999986 8999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCcCChHHHHHHHHHHhhhhc-----cHHhhhHHHHHHHHHHHHHHHHHHh
Q 006074 80 LFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGI-----YSESFEKPFLECTSEFYAAEGMKYM 154 (662)
Q Consensus 80 ~f~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~~ik~~i~ml~~l~~-----Y~~~fE~~~l~~t~~yY~~~s~~~~ 154 (662)
+|+++||.++++.++++++++++|+++|.|+.+|+.+|+++++||++||. |.+.||++||++|.+||+.+++.|+
T Consensus 146 lfr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l 225 (410)
T 4ap2_B 146 IFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFL 225 (410)
T ss_dssp HHHHHTTTSSHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998788999999999999999999999999999999999999985 9999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHH---hHHHHhhccCCHHHHHHHHHHhcc
Q 006074 155 QQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSR 231 (662)
Q Consensus 155 ~~~~~~~Yl~~v~~~i~eE~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~il~---~gl~~ll~~~~~~~L~~ly~l~~~ 231 (662)
++.++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|++.|+. +|+..||++++.++|++||+||++
T Consensus 226 ~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~r 305 (410)
T 4ap2_B 226 AENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSR 305 (410)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999986 899999999999999999999999
Q ss_pred c-chHHHHHHHHHHHHHHHhchhccCcc---chHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCc
Q 006074 232 V-NALESLRQALAMYIRRTGHGIVMDEE---KDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRP 307 (662)
Q Consensus 232 ~-~~l~~l~~~~~~~i~~~g~~~~~~~~---~~~~~i~~ll~l~~~~~~l~~~~F~~~~~~~~~~~~af~~~ln~~~~~~ 307 (662)
+ ++++.|+.+|++||++.|.+++.+.. .+..||+.|++++++|+.++.+||++|+.|..++++||+.|+|.++ +.
T Consensus 306 v~~gl~~L~~~~~~~I~~~G~~iv~~~~~~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~-~s 384 (410)
T 4ap2_B 306 VPNGLKTMCECMSSYLREQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS-RS 384 (410)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC-CC
Confidence 9 89999999999999999999997653 4679999999999999999999999999999999999999999998 57
Q ss_pred HHHHHHHHHHHh
Q 006074 308 AELIAKFLDEKL 319 (662)
Q Consensus 308 ~e~La~y~d~~l 319 (662)
||+||+|||..-
T Consensus 385 pElla~y~D~~~ 396 (410)
T 4ap2_B 385 PEYLAENLYFQS 396 (410)
T ss_dssp ------------
T ss_pred HHHHHHHccCcc
Confidence 799999999854
No 5
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=2.2e-56 Score=472.19 Aligned_cols=304 Identities=50% Similarity=0.825 Sum_probs=288.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCcccHHHHHHHH
Q 006074 1 MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQL 80 (662)
Q Consensus 1 ~ge~LY~~~~~~l~~~l~~~~~~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~~~~~i~~l~l~~ 80 (662)
+|++||+++++.+++|+...+.++.+...+++.||+.|.++|.+|+.++.+|+++|+||||+|+.++++.++|+++|+.+
T Consensus 49 ~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~l 128 (354)
T 4a64_A 49 ISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLEL 128 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTGGGGCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHH
Confidence 69999999999999999998877766554457899999999999999999999999999999999887579999999999
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHhCCCcCChHHHHHHHHHHhhhhccHHhhhHHHHHHHHHHHHHHHHHHhhcCChh
Q 006074 81 FRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVP 160 (662)
Q Consensus 81 f~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~~ik~~i~ml~~l~~Y~~~fE~~~l~~t~~yY~~~s~~~~~~~~~~ 160 (662)
|+++||.++++.++++++++++|+++|.|+.+|+.+|+++++||.+|++|.+.||++||++|.+||+.+++.|+++.+++
T Consensus 129 fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id~~lik~~i~ml~~L~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~ 208 (354)
T 4a64_A 129 FRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVP 208 (354)
T ss_dssp HHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 99999987789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccCCHHHHHHHHHHhccc-chHHHHH
Q 006074 161 DYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLR 239 (662)
Q Consensus 161 ~Yl~~v~~~i~eE~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~il~~gl~~ll~~~~~~~L~~ly~l~~~~-~~l~~l~ 239 (662)
+||++|+.++++|.+||..||+++|.+++.++|+++||.+|++.++.+|+..||++++.+||++||+||+++ +|++.|+
T Consensus 209 ~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~e~~LI~~h~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~ 288 (354)
T 4a64_A 209 EYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLL 288 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHccccccHHHHH
Confidence 999999999999999999999999999999999999999999999989999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHhchhccCccchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC
Q 006074 240 QALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQ 304 (662)
Q Consensus 240 ~~~~~~i~~~g~~~~~~~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~~~~~~~~af~~~ln~~~ 304 (662)
.+|++||++.|.+++.+..++..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.++
T Consensus 289 ~~~~~~I~~~G~~iv~~~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 289 QQWIEYIKAFGSTIVINPEKDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999988777889999999999999999999999999999999999999999875
No 6
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=2.6e-54 Score=458.03 Aligned_cols=300 Identities=35% Similarity=0.655 Sum_probs=235.1
Q ss_pred ChhHHHHHHHHHHHHHHH-HHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCcccHHHHHHH
Q 006074 1 MGGNLYQRIEKECEEHIS-AAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQ 79 (662)
Q Consensus 1 ~ge~LY~~~~~~l~~~l~-~~~~~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~~~~~i~~l~l~ 79 (662)
+|++||+++++.+++|+. .+...+.+..+ +.||+.|.++|.+|+.++.+|+++|+||||+|+.+++ .++|+++|+.
T Consensus 52 ~g~~LY~~l~~~~~~~l~~~v~~~~~~~~~--~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~-~~~I~~lgl~ 128 (364)
T 4eoz_B 52 HGEKLYTGLREVVTEHLINKVREDVLNSLN--NNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN-VENVYNLGLI 128 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHTHHHHHHTTTT--SSHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGT-CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCC-CCCHHHHHHH
Confidence 699999999999999999 45544444333 4799999999999999999999999999999999986 8999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCcCChHHHHHHHHHHhhhhc-----cHHhhhHHHHHHHHHHHHHHHHHHh
Q 006074 80 LFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGI-----YSESFEKPFLECTSEFYAAEGMKYM 154 (662)
Q Consensus 80 ~f~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~~ik~~i~ml~~l~~-----Y~~~fE~~~l~~t~~yY~~~s~~~~ 154 (662)
+|+++||.+++++++++++++++|+++|.|+.+|+.+|+++++||++||. |.+.||++||++|.+||+.+++.|+
T Consensus 129 ~fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l 208 (364)
T 4eoz_B 129 IFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFL 208 (364)
T ss_dssp HHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998778999999999999999999999999999999999999985 9999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHH---hHHHHhhccCCHHHHHHHHHHhcc
Q 006074 155 QQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSR 231 (662)
Q Consensus 155 ~~~~~~~Yl~~v~~~i~eE~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~il~---~gl~~ll~~~~~~~L~~ly~l~~~ 231 (662)
++.++++||++|+.++++|.+||..||+++|.+++.++|+++||.+|++.|++ +|+..||++++.+||++||+||++
T Consensus 209 ~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~r 288 (364)
T 4eoz_B 209 AENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSR 288 (364)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999986 899999999999999999999999
Q ss_pred c-chHHHHHHHHHHHHHHHhchhccCcc---chHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC
Q 006074 232 V-NALESLRQALAMYIRRTGHGIVMDEE---KDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR 303 (662)
Q Consensus 232 ~-~~l~~l~~~~~~~i~~~g~~~~~~~~---~~~~~i~~ll~l~~~~~~l~~~~F~~~~~~~~~~~~af~~~ln~~ 303 (662)
+ ++++.|+.+|++||++.|.+++.+.. .+..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 289 v~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 289 VPNGLKTMCECMSSYLREQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp STTHHHHHHHHHHHHHHHTC--------------------------------------------------------
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhCccccCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 9 89999999999999999999997653 456999999999999999999999999999999999999999974
No 7
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=5.4e-52 Score=444.13 Aligned_cols=300 Identities=21% Similarity=0.361 Sum_probs=280.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC-------CcccH
Q 006074 1 MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTP-------NVRSL 73 (662)
Q Consensus 1 ~ge~LY~~~~~~l~~~l~~~~~~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~-------~~~~i 73 (662)
+|++||+++++.+++|+..++.++....+ ++.||..|.++|.+|+.++.+|+++|+||||+|+.+++ +.++|
T Consensus 57 ~~~~LY~~l~~~~~~~l~~~~~~~~~~~~-~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I 135 (391)
T 2wzk_A 57 GSSKIHQALKEDILEFIKQAQARVLSHQD-DTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIV 135 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcH
Confidence 48999999999999999999888776443 37899999999999999999999999999999997642 35799
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCcCChHHHHHHHHHHhhh--------hccHHhhhHHHHHHHHHH
Q 006074 74 WDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTAL--------GIYSESFEKPFLECTSEF 145 (662)
Q Consensus 74 ~~l~l~~f~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~~ik~~i~ml~~l--------~~Y~~~fE~~~l~~t~~y 145 (662)
+++|+.+|+++||. +++++++++++.+|+++|.|+.+|+++|+++++||++| ++|.+.||++||++|.+|
T Consensus 136 ~~lgL~~fr~~v~~--~i~~~l~~~ll~lI~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~f 213 (391)
T 2wzk_A 136 RKLMLDTWNESIFS--NIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERF 213 (391)
T ss_dssp HHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHH
Confidence 99999999999995 79999999999999999999999999999999999974 589999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhhhcC----CCcHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccCCHHH
Q 006074 146 YAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLD----VSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTED 221 (662)
Q Consensus 146 Y~~~s~~~~~~~~~~~Yl~~v~~~i~eE~~r~~~~l~----~~t~~~l~~~l~~~LI~~~~~~il~~gl~~ll~~~~~~~ 221 (662)
|+.+++.|+++.++++||++|+.++++|.+||..||+ ++|.+++.++|+++||.+|.+.|+. |+..||++++.+|
T Consensus 214 Y~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~-~~~~lL~~~~~~d 292 (391)
T 2wzk_A 214 YRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILA-ECQGMIKRNETEK 292 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHHT-THHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCcCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999 9999999999999999999999885 8999999999999
Q ss_pred HHHHHHHhccc-chHHHHHHHHHHHHHHHhchhccC-----ccchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 006074 222 LQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD-----EEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDA 295 (662)
Q Consensus 222 L~~ly~l~~~~-~~l~~l~~~~~~~i~~~g~~~~~~-----~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~~~~~~~~a 295 (662)
|++||+||+++ +|++.|+..|++||++.|.+++.+ ..++..||+.|+++|++|+.++.+||++|+.|.+++++|
T Consensus 293 L~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~~v~~~~~~~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~a 372 (391)
T 2wzk_A 293 LHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKA 372 (391)
T ss_dssp HHHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999 999999999999999999998642 245679999999999999999999999999999999999
Q ss_pred HHHHhhcCC
Q 006074 296 FEYLINLRQ 304 (662)
Q Consensus 296 f~~~ln~~~ 304 (662)
|+.|+|.++
T Consensus 373 f~~fiN~~~ 381 (391)
T 2wzk_A 373 YKAVVNDAT 381 (391)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhCCch
Confidence 999999764
No 8
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=8.8e-28 Score=199.74 Aligned_cols=93 Identities=75% Similarity=1.124 Sum_probs=87.3
Q ss_pred EEecccccccchhhhhhhhHHHHHhhHhhhhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccc
Q 006074 570 IKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLE 649 (662)
Q Consensus 570 i~i~~~~~~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~ 649 (662)
++|+.++.+++.+|.+.+.+.+.+||.+.||||||||||++|+|+|++|+.+|.++++|+|++.+||+|||.||+||||+
T Consensus 3 ~ki~~i~~ke~~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~F~p~~~~IKk~IE~LIereYle 82 (101)
T 2do7_A 3 SGSSGIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYME 82 (101)
T ss_dssp CSSCSCCCCCCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHTTSEE
T ss_pred eeecccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhHHh
Confidence 45667777777778888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeecC
Q 006074 650 RDKNNPQIYNYLA 662 (662)
Q Consensus 650 r~~~~~~~y~Yia 662 (662)
|+++|+++|+|+|
T Consensus 83 R~~~d~~~y~YlA 95 (101)
T 2do7_A 83 RDKENPNQYNYIA 95 (101)
T ss_dssp ECSSCTTEEEECC
T ss_pred cCCCCCCeEEEec
Confidence 9999999999998
No 9
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.92 E-value=5.7e-26 Score=184.14 Aligned_cols=80 Identities=38% Similarity=0.611 Sum_probs=76.4
Q ss_pred hhhhhhhHHHHHhhHhhhhhhhhhhhcCCCCCChHHHHHHHHHhc--CCCCChhhHHHHHHhhhhhccccccCCCCCcee
Q 006074 582 EENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYN 659 (662)
Q Consensus 582 ~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 659 (662)
+|.+.+.+.+.+||.+.||||||||||++|+|+|++|+.+|.+++ +|+|++.+||+|||.||+||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 466778899999999999999999999999999999999999999 5999999999999999999999999988 9999
Q ss_pred ecC
Q 006074 660 YLA 662 (662)
Q Consensus 660 Yia 662 (662)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 998
No 10
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.92 E-value=1.5e-26 Score=189.75 Aligned_cols=85 Identities=46% Similarity=0.740 Sum_probs=79.0
Q ss_pred ccchhhhhhhhHHHHHhhHhhhhhhhhhhhcCCCCCChHHHHHHHHHhc--CCCCChhhHHHHHHhhhhhccccccCCCC
Q 006074 578 KETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNP 655 (662)
Q Consensus 578 ~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Liereyi~r~~~~~ 655 (662)
+++..|.+.+.+.+.+||.+.||||||||||++|+|+|++|+.+|.+++ +|+|++.+||+|||+||+||||+|+++|+
T Consensus 6 ~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~ 85 (92)
T 1iuy_A 6 GESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDR 85 (92)
T ss_dssp CCCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCS
T ss_pred cccHHHHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCC
Confidence 4566677777888999999999999999999999999999999999999 49999999999999999999999999999
Q ss_pred CceeecC
Q 006074 656 QIYNYLA 662 (662)
Q Consensus 656 ~~y~Yia 662 (662)
++|+|+|
T Consensus 86 ~~y~Y~A 92 (92)
T 1iuy_A 86 KVYTYVA 92 (92)
T ss_dssp SEEEEC-
T ss_pred CeeEecC
Confidence 9999998
No 11
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.92 E-value=4.5e-26 Score=180.39 Aligned_cols=73 Identities=47% Similarity=0.718 Sum_probs=71.0
Q ss_pred HHHHhhHhhhhhhhhhhhcCCCCCChHHHHHHHHHhc--CCCCChhhHHHHHHhhhhhccccccCCCCCceeecC
Q 006074 590 RVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 662 (662)
Q Consensus 590 ~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 662 (662)
.+++||.+.|+||||||||++|+|+|++|+.+|.+++ +|+|++.+||+|||+|||||||+|+++|+++|+|+|
T Consensus 3 ~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 3 NIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred chhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 4789999999999999999999999999999999999 699999999999999999999999999999999998
No 12
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=91.81 E-value=0.25 Score=40.30 Aligned_cols=50 Identities=10% Similarity=0.190 Sum_probs=44.3
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+..|..||..+.+++.+|..||++.+|++...+.++|..|. +.+++...+
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~~ 72 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMR--DEGLIDSQR 72 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 46788899888887799999999999999999999999999 888987653
No 13
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=91.41 E-value=0.18 Score=39.48 Aligned_cols=50 Identities=28% Similarity=0.470 Sum_probs=41.0
Q ss_pred HHHHHhcCC------CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCC
Q 006074 500 VVLMLFNDA------QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDV 551 (662)
Q Consensus 500 ~iLl~Fn~~------~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~ 551 (662)
.||....+. ...|+.||++.+|++...+.+.|..|. +.++|.+.+.++.+
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le--~kG~I~R~~ggr~~ 63 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLH--DVGVLEKVNAGKGV 63 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESCSSSS
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEecCCCCCc
Confidence 355555444 789999999999999999999999999 99999998765433
No 14
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=90.76 E-value=0.48 Score=38.70 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=42.8
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPK 547 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~ 547 (662)
++.+..||..+.+ +.+|+.||++.+|++...+.++|..|. +.+++.....
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~ 71 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLR--RDGLVTTRKE 71 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEECC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEe
Confidence 4556678877776 789999999999999999999999999 8999987543
No 15
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=90.03 E-value=0.15 Score=56.42 Aligned_cols=135 Identities=11% Similarity=0.128 Sum_probs=50.1
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCC-----ccceecCCCCCCCCCCCeEEEecCCCCCcce
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGK-----VRVLQKLPKGRDVEDDDSFVFNEGFTAPLYR 569 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k-----~~iL~~~~~~~~~~~~~~~~~N~~f~~~~~~ 569 (662)
+..+..||..+.+...+|..+|++.+|++...+++.|..|. . .+++... ++.|.++.........
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~--~~~~~~~glie~~--------g~~y~L~~~~~~~~~~ 498 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAAR--QTTVAGAPLIIAH--------DGVWLLGNACREILRK 498 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHH--TCEETTEESEEEE--------TTEEEECHHHHHHHTS
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHH--hhhccccceEEEe--------CCEEEECHHHHHHhcc
Confidence 45677888877788899999999999999999999999998 5 6788763 3578887753211000
Q ss_pred EEecccccccchhhhhhhhHHHHHhhHhhhhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccc
Q 006074 570 IKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLE 649 (662)
Q Consensus 570 i~i~~~~~~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~ 649 (662)
. . +. ...-...... -....+..|+..++.++.++-.++...+ ..+.....+.|..|+++|-|+
T Consensus 499 ~--~-----~~-~~~~~~~~~~---~~~~~~~~I~~~l~~~g~it~~di~~l~------~ls~~qa~~~L~~Lv~~G~l~ 561 (583)
T 3lmm_A 499 V--E-----PS-PFSPVRYLST---DQAELTNAAMLWLSEVGDLATSDLMAMC------GVSRGTAKACVDGLVDEERVV 561 (583)
T ss_dssp C--C----------------------------------------------------------------------------
T ss_pred c--c-----cc-cccccccccC---ChhHHHHHHHHHHHHcCCcCHHHHHHHH------CCCHHHHHHHHHHHHHCCcEE
Confidence 0 0 00 0000000000 0234567799999999999988876433 246777899999999999999
Q ss_pred ccCCCCC
Q 006074 650 RDKNNPQ 656 (662)
Q Consensus 650 r~~~~~~ 656 (662)
+....++
T Consensus 562 ~~G~gr~ 568 (583)
T 3lmm_A 562 AVGGGRS 568 (583)
T ss_dssp -------
T ss_pred EeCCCCc
Confidence 9876654
No 16
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=89.75 E-value=0.65 Score=36.49 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=43.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 500 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 500 ~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
.||..+.+.+.+|..||++.+|++...+.+.|..|. +.+++...+.+. ..+..|.++.+
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~--~~GlI~~~~~~~--gr~~~y~l~~~ 62 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLE--KAGMVQRSPLRR--GMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHH--HHTSEEEECCSS--SSSCEEEESSC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeccCC--CCcEEEEEChh
Confidence 466666666789999999999999999999999999 888888543211 12345666554
No 17
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=89.50 E-value=0.33 Score=38.37 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=45.8
Q ss_pred EecHHHHHHHHHhcCC--CCCCHHHHHHHh-----CCCHHHHHHHhhHhhcCCccceecCC
Q 006074 493 AVSLFQTVVLMLFNDA--QKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
..+.-+..||..+.+. ..+|.+||++.+ +++...+.++|..|. +.+++.+.+
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~--~~Glv~~~~ 72 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFD--DAGIVTRHN 72 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTSEEEEE
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCCeEEEe
Confidence 4577888999888775 589999999999 999999999999999 899998754
No 18
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=89.29 E-value=0.64 Score=37.84 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=45.8
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
+..+..||..+ .+.+|+.+|++.+|++...+.++|..|. +.+++.+.+ ..|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~--~~Glv~~~~--------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLE--AGFCIERVG--------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET--------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEC--------CEEEECCC
Confidence 45566777777 4579999999999999999999999999 889998753 27777764
No 19
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=89.15 E-value=0.49 Score=41.54 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=46.6
Q ss_pred EEecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 492 LAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 492 l~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+.+|+.|..||..+..++ +|..+|++.+|++...+.++|..|. +.|++.+.+
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~--~~Glv~r~~ 85 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLV--KEGMLETSK 85 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeEecc
Confidence 457899999999999888 9999999999999999999999999 899998754
No 20
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=89.14 E-value=0.45 Score=37.24 Aligned_cols=46 Identities=30% Similarity=0.374 Sum_probs=38.5
Q ss_pred HHHHHHhcCCC---CCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 499 TVVLMLFNDAQ---KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 499 ~~iLl~Fn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
..||..+.+.. .+|..||++.+|++...+.++|..|. +.+++...+
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~--~~G~I~~~g 65 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecC
Confidence 55665555544 89999999999999999999999999 888887754
No 21
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=89.07 E-value=0.33 Score=40.10 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=45.0
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
++..|..||..+...+.+|..+|++.+|++...+.++|..|. +.+++.+.
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~--~~glv~~~ 67 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLL--KRGFVRRE 67 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 578899999888777789999999999999999999999999 88888764
No 22
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=88.78 E-value=0.44 Score=41.90 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=46.5
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLA--GQGLIEWQE 79 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 588899999988877789999999999999999999999999 889998764
No 23
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=88.63 E-value=0.37 Score=42.24 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=47.6
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+|..|..||......+++|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 84 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLE--KKDYVVRTR 84 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCeEecC
Confidence 3578899999999888899999999999999999999999999 889998764
No 24
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=88.57 E-value=0.5 Score=38.27 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=46.2
Q ss_pred EEEEecHHHHHHHHHhcC--CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 490 KELAVSLFQTVVLMLFND--AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 490 ~~l~vs~~Q~~iLl~Fn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
....++..|..||....+ ++.++..+|++.++++...+.+.|..|. +.+++.+.
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE--~kglIkr~ 69 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLE--SKKLIKAV 69 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 345668889999988876 5689999999999999999999999999 77888743
No 25
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=87.88 E-value=0.35 Score=42.39 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=43.6
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+|..|+.||......+++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 85 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELE--GRNLVRRER 85 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 4688899999999888899999999999999999999999999 899998764
No 26
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=87.66 E-value=0.51 Score=36.99 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=39.7
Q ss_pred HHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 500 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 500 ~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
.|+...++++.++++||++.+++++..+++-|..|. +.+.|.+.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le--~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLE--SMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 366777888999999999999999999999999999 88888876
No 27
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=87.52 E-value=0.56 Score=41.32 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=46.3
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+|..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 88 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE--EKKYIEVNG 88 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeec
Confidence 4688899999999888899999999999999999999999999 889998764
No 28
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=87.52 E-value=0.82 Score=39.16 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=41.6
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
++.+..||..+...+.+|+.+|++.+|++...+.++|..|. ..|++....
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~~ 90 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLY--KQGVVNFRK 90 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEE
Confidence 44566677777655789999999999999999999999999 889987654
No 29
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=87.39 E-value=0.81 Score=40.64 Aligned_cols=51 Identities=10% Similarity=0.206 Sum_probs=46.7
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le--~~Glv~r~~ 91 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMD--ARGLVTRVA 91 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecc
Confidence 578899999999888899999999999999999999999999 888988754
No 30
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=87.23 E-value=0.51 Score=40.55 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=45.3
Q ss_pred EEecHHHHHHHHHhcCCCC--CCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 492 LAVSLFQTVVLMLFNDAQK--LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 492 l~vs~~Q~~iLl~Fn~~~~--~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+.+|..|..||..+.+.+. +|..||++.+|++...+.++|..|. +.+++.+.
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~--~~GlV~r~ 75 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLH--EKEILQRS 75 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEee
Confidence 4567889999988776655 9999999999999999999999999 88998764
No 31
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=87.09 E-value=0.47 Score=42.01 Aligned_cols=51 Identities=12% Similarity=0.211 Sum_probs=45.8
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||......+++|..+|++.++++...+.+.+..|. +.|++.+.+
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 89 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLE--QSGWVKRER 89 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEC--
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeeCC
Confidence 578899999998888899999999999999999999999999 899998764
No 32
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=86.98 E-value=0.92 Score=35.80 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCC---CCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 498 QTVVLMLFNDAQ---KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 498 Q~~iLl~Fn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
+..||..+.+.. .+|..+|++.+|++...+.++|..|. +.+++.+.+. ....|.++..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le--~~G~I~~~g~-----~~~~W~i~~~ 72 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEAG-----TPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESS-----SSCEEEEC--
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecCC-----CCCeeEEeCc
Confidence 555666665555 89999999999999999999999998 8888877542 1256666543
No 33
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=86.84 E-value=0.69 Score=38.14 Aligned_cols=51 Identities=10% Similarity=0.267 Sum_probs=42.3
Q ss_pred ecHHHHHHHHHhcC-CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
++..|..+|+.+-. .+.+|..||++.+|++...+.++|..|. +.+++.+.+
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~--~~g~v~~~~ 70 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLI--ELGLVVRTK 70 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEeec
Confidence 45667777755543 6789999999999999999999999999 888988754
No 34
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=86.76 E-value=0.4 Score=42.05 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=46.5
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||......+++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 85 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLL--RKELIVREI 85 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCeeccC
Confidence 578899999888877899999999999999999999999999 889998754
No 35
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=86.58 E-value=0.59 Score=37.41 Aligned_cols=44 Identities=5% Similarity=0.089 Sum_probs=39.5
Q ss_pred HHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 500 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 500 ~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
.|+...++.+.++++||++.+++++..+++-|..|. +.+.|.+.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le--~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERME--AMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHH--TTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 366777888999999999999999999999999999 88888775
No 36
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=86.52 E-value=1.2 Score=36.63 Aligned_cols=61 Identities=11% Similarity=0.221 Sum_probs=46.6
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
++....||..+.+ ++.|+.||++.+|++...+.++|..|. +.+++.....|+ ...|+++.+
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~g~----~~~y~l~~~ 82 (102)
T 3pqk_A 22 HPVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLR--ESGIVETRRNIK----QIFYRLTEA 82 (102)
T ss_dssp SHHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHH--HTTSEEEECSSS----CCEEEECSS
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCC----EEEEEECcH
Confidence 3445567766655 569999999999999999999999999 899998765432 345666654
No 37
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=86.51 E-value=0.66 Score=40.60 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=45.4
Q ss_pred ecHHHHHHHHHh-cCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLF-NDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~F-n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+ ...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~--~~glv~r~~ 86 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLE--SQGLVRRLA 86 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH--HCCCeeecC
Confidence 467788999888 777899999999999999999999999999 888888754
No 38
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=86.29 E-value=0.7 Score=40.98 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=45.4
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
+|..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLI--SLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 588899999988888889999999999999999999999999 8889887
No 39
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=86.28 E-value=0.86 Score=39.88 Aligned_cols=50 Identities=8% Similarity=0.165 Sum_probs=45.0
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+. .+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~~ 84 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLE--EMGLVVRVR 84 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHH--HCCCEEeec
Confidence 4788999998888 8899999999999999999999999999 888887653
No 40
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=86.08 E-value=0.48 Score=40.89 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=45.8
Q ss_pred EecHHHHHHHHHhcCC--CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 493 AVSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+|..|..||...... +.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 87 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS--QEDYFDKKR 87 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH--HTTSSCCBC
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecC
Confidence 3578899999877666 789999999999999999999999999 889998764
No 41
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=85.91 E-value=0.61 Score=40.58 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=45.0
Q ss_pred ecHHHHHHHHHhcCCC--CCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQ--KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+...+ ++|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~~ 81 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE--RKKLIYRYV 81 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeecC
Confidence 5778999998877654 99999999999999999999999999 889988754
No 42
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=85.67 E-value=0.77 Score=40.57 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=46.3
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 88 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQ--RAGLIERRT 88 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeeecC
Confidence 578899999988887899999999999999999999999999 888888754
No 43
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=85.54 E-value=0.81 Score=39.78 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=44.9
Q ss_pred ecHHHHHHHHHhcCCC--CCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQ--KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+...+ .+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~~ 84 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRME--IKKLLYRKV 84 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHH--HCCCEEeeC
Confidence 5778999998877666 89999999999999999999999999 888887754
No 44
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=85.45 E-value=0.62 Score=40.41 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=45.5
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|+.||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~--~~gli~r~~ 82 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLV--CKGWVERLP 82 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHH--HCCCEEecC
Confidence 578899999888877789999999999999999999999999 888887643
No 45
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=84.92 E-value=0.93 Score=39.20 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=46.0
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+..++.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~--~~glv~~~~ 77 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLE--ESGFIEREQ 77 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeec
Confidence 578899999888888899999999999999999999999999 888887643
No 46
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=84.87 E-value=0.59 Score=42.04 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=46.4
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 94 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLL--ANGWIEKAP 94 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCeEecC
Confidence 578899999988888899999999999999999999999999 889998754
No 47
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=84.61 E-value=0.71 Score=35.10 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=47.1
Q ss_pred hhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCceeecC
Q 006074 601 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 662 (662)
Q Consensus 601 A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 662 (662)
...|...|.+|.+..++|-. .|..+.+++-.||+.|.+.|-|.=-=+|+..|+||.
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~------~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAF------QMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHH------HHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHHcCeeeHHHHHH------HhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 34467789999999888764 368889999999999999999988777899999984
No 48
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=84.53 E-value=0.77 Score=37.46 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=45.4
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHH----HHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDI----KDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei----~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
.+|..|..||..+.+.+.+|..+| ++.++++...+.+.|..|. +.+++.+.
T Consensus 5 ~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le--~~gli~r~ 59 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLI--QEGFVKER 59 (99)
T ss_dssp SSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 357789999999988889999999 8899999999999999999 88888764
No 49
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=84.49 E-value=1.1 Score=35.23 Aligned_cols=49 Identities=6% Similarity=0.109 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHhCCCHH-HHHHHhhHhhcCCccceecCC
Q 006074 496 LFQTVVLMLFNDAQKLSFQDIKDATGIEDK-ELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 496 ~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~-~l~~~L~~L~~~k~~iL~~~~ 546 (662)
..+--||.+....+..|..+|++.+||+.. .++++|..|- +.+++.+.+
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le--~eGlV~~~~ 60 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDME--RQGDVYRQG 60 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHH--HTTSEEEEC
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHH--HCCCEEecC
Confidence 456667777777789999999999999998 9999999999 888887543
No 50
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=84.39 E-value=0.99 Score=40.35 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=45.3
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~glv~r~~ 97 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLL--ERGFIRRET 97 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeeec
Confidence 578899999888878899999999999999999999999999 889998753
No 51
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=84.30 E-value=1.1 Score=36.33 Aligned_cols=50 Identities=6% Similarity=0.179 Sum_probs=45.8
Q ss_pred EEecHHHHHHHHHhcCCCCCCHHHHHH-HhCCCHHHHHHHhhHhhcCCcccee
Q 006074 492 LAVSLFQTVVLMLFNDAQKLSFQDIKD-ATGIEDKELRRTLQSLACGKVRVLQ 543 (662)
Q Consensus 492 l~vs~~Q~~iLl~Fn~~~~~t~~ei~~-~t~i~~~~l~~~L~~L~~~k~~iL~ 543 (662)
..+|..|+.||......+..|..+|++ ..+++...+-+++.+|. +.|++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~--r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLI--KKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHH--TTTSEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHH--HCCCee
Confidence 356888999999998888999999999 99999999999999999 889887
No 52
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=84.29 E-value=0.66 Score=41.67 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=46.5
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLV--DEGLAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeeC
Confidence 578899999888877899999999999999999999999999 889998764
No 53
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=84.21 E-value=1 Score=35.44 Aligned_cols=47 Identities=9% Similarity=0.138 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 497 FQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 497 ~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.-..||.++.... .|+.||++.+|++...+.++|..|. +.+++.+.+
T Consensus 18 ~~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le--~eG~I~~~~ 64 (82)
T 1oyi_A 18 IVCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQ--RSAMVYSSD 64 (82)
T ss_dssp HHHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEECS
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeCC
Confidence 3334555555544 9999999999999999999999999 888888754
No 54
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=84.14 E-value=0.78 Score=39.87 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=46.1
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+|..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~--~~gli~~~~ 79 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLE--ESGYIIRKR 79 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecC
Confidence 4678899999888877889999999999999999999999999 888887643
No 55
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=83.82 E-value=0.92 Score=41.06 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=45.1
Q ss_pred ecHHHHHHHHHhcC-CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|+.||..+.. .+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~GlV~r~~ 102 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE--DKGLISRQT 102 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEeeC
Confidence 57789999988876 6789999999999999999999999999 899998764
No 56
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=83.79 E-value=0.78 Score=36.04 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=45.5
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhC----CCHHHHHHHhhHhhcCCccceecCC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATG----IEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+|..|..||..+.+.+.+|..||++.++ ++...+.+.|..|. +.+++.+.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~--~kGlv~r~~ 61 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLI--KKGALNHHK 61 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHH--HCCCeEEEe
Confidence 36888999998887778999999999986 78999999999999 889998754
No 57
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=83.70 E-value=0.9 Score=40.24 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=46.0
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||......+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~~ 95 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQ--AAGLVTRTR 95 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeecC
Confidence 578899999888888899999999999999999999999999 888888754
No 58
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=83.65 E-value=0.88 Score=39.90 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=46.3
Q ss_pred EecHHHHHHHHHhcC-CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 493 AVSLFQTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+|..|..||..... .+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le--~~glv~r~~ 84 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELE--RGGLIVRHA 84 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH--HCCCEeeCC
Confidence 367889999988887 7889999999999999999999999999 888888754
No 59
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=83.27 E-value=0.71 Score=40.34 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=45.2
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le--~~gli~r~~ 77 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLE--EQGFIYRQE 77 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEeec
Confidence 477788999888777899999999999999999999999999 888887643
No 60
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=83.09 E-value=0.51 Score=40.94 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=45.8
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~--~~gli~r~~ 81 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMK--RDGYVMTEK 81 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHH--HCCCeeecc
Confidence 578899999888888899999999999999999999999999 888887643
No 61
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=83.00 E-value=1.1 Score=37.19 Aligned_cols=48 Identities=13% Similarity=0.233 Sum_probs=40.1
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
++.+..||..+. .+.+|+.+|++.+|++...+.++|..|. +.+++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 455666776666 4578999999999999999999999999 88888764
No 62
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=82.93 E-value=0.89 Score=40.02 Aligned_cols=50 Identities=8% Similarity=0.153 Sum_probs=45.2
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+|..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Glv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRME--RNGLVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH--HCCCeeec
Confidence 578899999888877889999999999999999999999999 88888764
No 63
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=82.93 E-value=0.91 Score=40.64 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=45.6
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+|..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQ--ADGLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEec
Confidence 578899999988888899999999999999999999999999 88888764
No 64
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=82.92 E-value=1.2 Score=39.22 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=43.2
Q ss_pred ecHHHHHHHHHhcC-CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..... .+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv~r~~ 88 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE--ERGLVVRTL 88 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH--TTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEeeC
Confidence 56789999987753 4578999999999999999999999999 899998754
No 65
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=82.91 E-value=0.77 Score=41.59 Aligned_cols=52 Identities=13% Similarity=0.365 Sum_probs=46.4
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+|..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~~ 93 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLV--GAELIDRLP 93 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEecc
Confidence 4688899999888877789999999999999999999999999 888987743
No 66
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=82.63 E-value=1 Score=38.92 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=45.4
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
.+|..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~--~~glv~r~ 85 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLD--KRGLIQRS 85 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHH--HTTCEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 3578899999888777799999999999999999999999999 88888764
No 67
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=82.49 E-value=1.5 Score=38.33 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=41.2
Q ss_pred ecHHHHHHHHHhc-CCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFN-DAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn-~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
++..|..+|..+. ..+++|..+|++.+|++...+.+.|..|. +.|++.+.+
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~--~~G~v~r~~ 75 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLE--ELGFVRKVW 75 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 4566666664442 34689999999999999999999999999 889998754
No 68
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=82.40 E-value=0.63 Score=41.65 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=45.2
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||......+++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 98 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLV--DEGYVFRQR 98 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 466788899888777899999999999999999999999999 889988754
No 69
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=82.13 E-value=1 Score=40.01 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=45.2
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+|..|..||..+...+.+|..+|++.++++...+.+.+..|. +.+++.+.
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~Gli~r~ 91 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLE--KRGLVVRE 91 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 578899999888777789999999999999999999999999 88888764
No 70
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=82.11 E-value=1.1 Score=39.05 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=45.3
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+|..|+.||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~--~~glv~r~ 80 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLE--ADGYLTRT 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH--HCCCeeec
Confidence 578899999888877789999999999999999999999999 88888764
No 71
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=82.08 E-value=0.76 Score=40.77 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=46.2
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+|..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~~ 85 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLE--QKNLIARTH 85 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecC
Confidence 3578899999888877789999999999999999999999999 888887653
No 72
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=81.86 E-value=0.75 Score=38.42 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 498 QTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 498 Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+..||..+.+ +.+|+.||++.+|++...+.++|..|. +.+++...
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~ 71 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALK--SGGLVEAR 71 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 4456666664 688999999999999999999999999 88998764
No 73
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=81.79 E-value=0.84 Score=40.03 Aligned_cols=51 Identities=12% Similarity=0.270 Sum_probs=46.0
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~--~~glv~r~~ 88 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRME--QQGLITRKR 88 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHH--HHTSEECCB
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHH--HCCCEEecc
Confidence 578899999888877789999999999999999999999999 889998754
No 74
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=81.69 E-value=0.62 Score=40.70 Aligned_cols=51 Identities=12% Similarity=0.270 Sum_probs=45.8
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~--~~gli~r~~ 85 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRME--QVDLIKRER 85 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeec
Confidence 578899999988877889999999999999999999999999 888887643
No 75
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=81.68 E-value=0.95 Score=36.73 Aligned_cols=48 Identities=10% Similarity=0.263 Sum_probs=41.7
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
++.+..||..+...+.+|+.+|++.+|++...+.++|..|. +.+++.+
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~--~~gli~~ 62 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLE--RNGLVKT 62 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 56778888777656689999999999999999999999999 8888875
No 76
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=81.62 E-value=1.2 Score=34.94 Aligned_cols=59 Identities=15% Similarity=0.338 Sum_probs=44.6
Q ss_pred hhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCceeec
Q 006074 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 661 (662)
Q Consensus 600 ~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 661 (662)
+..|.+++-....++..+|...+-.. -.++...+...|+.|.++|||+|..+++ .+.|-
T Consensus 11 e~~vL~~L~~~~~~t~~ei~~~l~~~--~~~s~~Tv~~~l~rL~~kGlv~r~~~gr-~~~y~ 69 (82)
T 1p6r_A 11 ELEVMKVIWKHSSINTNEVIKELSKT--STWSPKTIQTMLLRLIKKGALNHHKEGR-VFVYT 69 (82)
T ss_dssp HHHHHHHHHTSSSEEHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHhhc--CCccHHHHHHHHHHHHHCCCeEEEecCC-EEEEE
Confidence 34455666557789999988877542 2467899999999999999999987543 57774
No 77
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=81.60 E-value=1.2 Score=40.62 Aligned_cols=66 Identities=11% Similarity=0.289 Sum_probs=45.4
Q ss_pred cCCceEEEEEEecCceEEEEecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 474 NSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 474 ~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
|+-+++.+...- .-...++..+..||..+.+...+|+.||++.+|+++..+.+.|..|. +.+++..
T Consensus 8 ~~~~~~~~~~~~---~m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~--~~G~I~~ 73 (171)
T 2e1c_A 8 HHHSSGLVPRGS---HMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLR--ESGVIKK 73 (171)
T ss_dssp -------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSSCC
T ss_pred cccccccccccc---ccccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEe
Confidence 344555554332 22345788899999888888899999999999999999999999999 7888765
No 78
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=81.59 E-value=3.3 Score=37.21 Aligned_cols=58 Identities=10% Similarity=0.233 Sum_probs=43.7
Q ss_pred HHHHHHHhcC-CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 498 QTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 498 Q~~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
.+.+.+.-+. ...+|.++|++.+++|...+.+.|..|. +.+++....+ .++-|.+..+
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~--~aGlv~s~rG-----~~GGy~Lar~ 89 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLR--NAGIVKSIRG-----AHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEECS-----TTCEEEECSC
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCeEEEecC-----CCCceEecCC
Confidence 3444444443 3479999999999999999999999999 9999876432 3456777664
No 79
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=81.45 E-value=0.85 Score=39.90 Aligned_cols=51 Identities=8% Similarity=0.186 Sum_probs=45.3
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+|+.|..||......+. |..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 84 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLE--AKGLVRRIR 84 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHH--HCCCEEecc
Confidence 467889999988888777 999999999999999999999999 888888753
No 80
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=81.40 E-value=0.58 Score=41.30 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=38.9
Q ss_pred ecHHHHHHHHHhcCC--CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||...... +.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 91 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLE--KKGYIERRI 91 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHH--HTTSBCCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEeeC
Confidence 578899999877765 789999999999999999999999999 889998754
No 81
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=81.28 E-value=1 Score=39.88 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=43.3
Q ss_pred ecHHHHHHHHHh--cCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLF--NDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~F--n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||... ++.+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le--~~Glv~r~~ 85 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV--RSGLVAKRP 85 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--hCCCEEEee
Confidence 467788777655 455679999999999999999999999999 899998764
No 82
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=81.03 E-value=1.1 Score=37.60 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=40.8
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
++.+..||..+ ..+.+|+.+|++.+|++...+.++|..|. +.+++...
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~--~~gli~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQ--ACGLVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeeEE
Confidence 45667788777 44679999999999999999999999999 88888764
No 83
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=81.00 E-value=2.6 Score=32.43 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=38.3
Q ss_pred HHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCC
Q 006074 501 VLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPK 547 (662)
Q Consensus 501 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~ 547 (662)
++..+.+++..|..+|+..+|++...+.++|-+|. +.+.+...|.
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~--kkG~V~~~~~ 64 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQ--KEDTVKMVPS 64 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEECC
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHH--HCCCEecCCC
Confidence 35567777779999999999999999999999999 8777776653
No 84
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=80.86 E-value=1.1 Score=39.12 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=45.3
Q ss_pred eEEEEecHHHHHHHHHhcC-----CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 489 KKELAVSLFQTVVLMLFND-----AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 489 ~~~l~vs~~Q~~iLl~Fn~-----~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
..++-+|.-++.+|+++-. ....|.++|++.+|++..++.+.|..|+ +.++|..
T Consensus 25 y~~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~--~KGlI~i 83 (135)
T 2v79_A 25 YKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFI--QKGFLFI 83 (135)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHH--HHTSCEE
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 3456778889988877554 3568999999999999999999999999 8888876
No 85
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=80.81 E-value=2 Score=38.14 Aligned_cols=51 Identities=25% Similarity=0.302 Sum_probs=44.5
Q ss_pred ecHHHHHHHHHhcC-CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|+.||..... .+..+..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le--~~GlV~R~~ 80 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE--EKGLITRHT 80 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH--hCCCeEeec
Confidence 57889999988764 4578889999999999999999999999 889998754
No 86
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=80.81 E-value=0.97 Score=49.45 Aligned_cols=133 Identities=11% Similarity=0.114 Sum_probs=88.5
Q ss_pred HHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecCCCCCcceEEecccccccc
Q 006074 501 VLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKET 580 (662)
Q Consensus 501 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f~~~~~~i~i~~~~~~~~ 580 (662)
|.-.....+.+|+.+|...|+++...++.+|..|+ +.+++...+.+. ....|.+|.+ .-..+++.|.+
T Consensus 24 V~~~Ll~~G~ltL~~I~~~t~L~~~~Vk~~L~vLI--Qh~lV~~~~~~~---~~~~Y~~~~~--~il~~lR~pk~----- 91 (534)
T 2xub_A 24 IGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLV--QHNLVSYQVHKR---GVVEYEAQCS--RVLRMLRYPRY----- 91 (534)
T ss_dssp HHHHHHHHCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEEETT---TEEEEEECHH--HHHGGGGHHHH-----
T ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHHHHH--hcCCeeEEeCCC---CcEEEEEChh--hHHHHHhhHHH-----
Confidence 33333345789999999999999999999999999 888886543211 1134555432 11112221110
Q ss_pred hhhhhhhhHHHHHhhHhhhhhhhhhhhcCCCCCChHHHHHHHHHhcC------CCCChhhHHHHHHhhhhhccccccCC
Q 006074 581 VEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLK------FPIKPADLKKRIESLIDREYLERDKN 653 (662)
Q Consensus 581 ~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~------F~~~~~~ik~~Ie~Liereyi~r~~~ 653 (662)
-...+.+--..-|.|+-.+=..+.++.++|+..+...+. =.++...+...+..|++.+||.|.+.
T Consensus 92 --------l~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 92 --------IYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred --------HHHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 011122222344667777777899999999999877551 13678999999999999999999764
No 87
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=80.63 E-value=0.83 Score=34.52 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCC-CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 497 FQTVVLMLFNDA-QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 497 ~Q~~iLl~Fn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
..-.||.++.+. ..+|..||++.+|+|...+.+.|..|. +.+++..
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~--~~G~I~~ 57 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLK--KEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHH--HTTSEEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEec
Confidence 344577777554 479999999999999999999999998 7777654
No 88
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=80.51 E-value=2.2 Score=36.20 Aligned_cols=49 Identities=10% Similarity=0.075 Sum_probs=41.3
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
++.+..||..+.+ +..++.+|++.+|++...+.++|..|. +.+++....
T Consensus 20 ~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~~ 68 (118)
T 2jsc_A 20 DPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLR--GCGLVVATY 68 (118)
T ss_dssp SHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHT--TTTSEEEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEEE
Confidence 5667778877764 468999999999999999999999999 899987654
No 89
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=80.50 E-value=1.2 Score=38.71 Aligned_cols=50 Identities=10% Similarity=0.168 Sum_probs=45.3
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+|..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le--~~glv~r~ 83 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLE--RDGIVRRW 83 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEee
Confidence 578899999888877789999999999999999999999999 88888764
No 90
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=80.34 E-value=2 Score=37.94 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=43.2
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+..+..||..+.++..+|..+|++.+|++...+.+.|..|. +.|++.+.
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~~ 50 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLE--KDGVIKGY 50 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSSCCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEE
Confidence 45677888888888899999999999999999999999999 88888753
No 91
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=80.32 E-value=1.7 Score=35.48 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=44.0
Q ss_pred EecHHHHHHHHHhcCC------CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 493 AVSLFQTVVLMLFNDA------QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~------~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
-+++.|..+|..+.+. ..+++.+|++.++++...|.++|..|. +.+++...
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe--~~GLV~r~ 69 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQ--AAGLADVS 69 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHH--HCCCEEee
Confidence 3688999998866554 679999999999999999999999999 88888753
No 92
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=80.09 E-value=1.2 Score=41.25 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=45.4
Q ss_pred ecHHHHHHHHHhcC--CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFND--AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..... .+++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~~ 91 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLE--KNGYVDVIP 91 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecc
Confidence 78889999987765 5689999999999999999999999999 889998754
No 93
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=79.85 E-value=3.6 Score=36.20 Aligned_cols=57 Identities=9% Similarity=0.219 Sum_probs=42.1
Q ss_pred HHHHHHhcCC-CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 499 TVVLMLFNDA-QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 499 ~~iLl~Fn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
+.+.+.-+.. ..+|.++|++.+|+|...+.+.|..|. +.+++....+ .++-|.+..+
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~--~aGlv~s~rG-----~~GGy~Lar~ 73 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLR--NAGLIRSVRG-----AKGGYQLRVP 73 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECSS-----SSSEEEESSC
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCEEEecCC-----CCCCeeecCC
Confidence 3333444433 469999999999999999999999999 8999875432 2356777653
No 94
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=79.76 E-value=1.9 Score=38.19 Aligned_cols=49 Identities=8% Similarity=0.228 Sum_probs=43.8
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
++..+..||..+.+.+.+|+.+|++.+|++...+.+.|..|. +.|++.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLE--SRGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 567788888888877899999999999999999999999999 8888865
No 95
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=78.88 E-value=0.44 Score=39.31 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=44.5
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCceeecC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 662 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 662 (662)
-+..|.+++-....++..+|...+... -.++...|...|+.|.++|+|+|..+. ..|.|-|
T Consensus 36 ~e~~VL~~L~~~~~~t~~eL~~~l~~~--~~~s~sTVt~~L~rLe~KGlV~R~~~g-R~~~Y~p 96 (99)
T 2k4b_A 36 AELIVMRVIWSLGEARVDEIYAQIPQE--LEWSLATVKTLLGRLVKKEMLSTEKEG-RKFVYRP 96 (99)
T ss_dssp SCSHHHHHHHHHSCEEHHHHHHTCCGG--GCCCHHHHHHHHHHHHHTTSCEEEEET-TEEEEEC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhcc--cCCCHhhHHHHHHHHHHCCCEEEEeCC-CEEEEEE
Confidence 345566666666678888877554321 245789999999999999999998654 4788865
No 96
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=78.83 E-value=1.2 Score=41.95 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=46.3
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+...+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le--~~GlV~r~~ 96 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLE--ERGYLRFSK 96 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 588899999888777889999999999999999999999999 899998764
No 97
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=78.56 E-value=2 Score=37.02 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=43.5
Q ss_pred EEEecHHHHHHHHHhc---C-C-CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 491 ELAVSLFQTVVLMLFN---D-A-QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 491 ~l~vs~~Q~~iLl~Fn---~-~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+-++.-|+.||+.+- + + ...|.++|++.+|++...+.++|..|. +.|+|.+.+
T Consensus 27 ~lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le--~kGlI~~~~ 85 (128)
T 2vn2_A 27 QLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL--QKGMIAIEE 85 (128)
T ss_dssp TTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH--HTTSSEECC
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 3456777887776543 2 2 348999999999999999999999999 899998864
No 98
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=78.56 E-value=1.1 Score=39.62 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=44.9
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
.+|..|..||... ..+++|..+|++.+|++...+.+.+..|. +.|++.+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLL--NAELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHH--HTTSEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 4588899999888 77899999999999999999999999999 8899986
No 99
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=78.51 E-value=4.4 Score=34.71 Aligned_cols=48 Identities=10% Similarity=0.258 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 508 AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 508 ~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
...+|..+|++.+|+|...+.+.|..|. +.+++...++ .+..|.+..+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~--~~Glv~~~~g-----~~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR--NAGLVKSIRG-----AYGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEecCC-----CCCceEeCCC
Confidence 4579999999999999999999999999 8999876531 2345777654
No 100
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=77.97 E-value=0.99 Score=40.27 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=45.5
Q ss_pred ecHHHHHHHHHh-cCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLF-NDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~F-n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+ ...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le--~~Gli~r~~ 96 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLI--KDGMVVKAM 96 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHH--HHTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeec
Confidence 688899999888 567789999999999999999999999999 889998754
No 101
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=77.55 E-value=2.5 Score=37.16 Aligned_cols=49 Identities=6% Similarity=0.251 Sum_probs=42.9
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
++..+-.||..+.++..+|+.+|++.+|++...+.+.|..|. +.+++.+
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLE--SFGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEE
Confidence 456677888888877889999999999999999999999999 8888875
No 102
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=77.48 E-value=2.2 Score=38.83 Aligned_cols=54 Identities=11% Similarity=0.304 Sum_probs=45.2
Q ss_pred eEEEEecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 489 KKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 489 ~~~l~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
.....++..+..||..+.....+|+.+|++.+|++...+.+.|..|. +.+++.+
T Consensus 10 ~~~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~--~~G~I~~ 63 (171)
T 2ia0_A 10 SSEIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQ--ERGVIER 63 (171)
T ss_dssp ----CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCcCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEe
Confidence 44456788888899888888899999999999999999999999999 8888864
No 103
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=77.46 E-value=2.1 Score=38.61 Aligned_cols=58 Identities=10% Similarity=0.194 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 498 QTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 498 Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
++.+.+.-+....+|.++|++.+++|...+.+.|..|. +.+++..... .++-|.+..+
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~--~aGlv~s~rG-----~~GGy~Lar~ 73 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLH--KHGYLTGTVG-----KNGGYQLDLA 73 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHH--HTTSSEEECS-----TTCEEECCSC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeecC-----CCCCeEecCC
Confidence 44444555555679999999999999999999999999 8898865432 2344666543
No 104
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=76.85 E-value=1.9 Score=41.90 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=45.1
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
.++..|..||..+.+.+.+|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 149 ~L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le--~~GlV~r~ 199 (244)
T 2wte_A 149 DYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELK--KFGILTQK 199 (244)
T ss_dssp CCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 3567888999887777789999999999999999999999999 88998864
No 105
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=76.51 E-value=1.8 Score=36.68 Aligned_cols=49 Identities=6% Similarity=0.059 Sum_probs=40.6
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
++....||..+.+ ++.|+.+|++.+|++...+.++|..|. +.+++....
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~--~~GlV~~~~ 65 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLE--DSGWIRTHK 65 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEEe
Confidence 3455667766664 678999999999999999999999999 899997653
No 106
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=75.86 E-value=2.7 Score=37.28 Aligned_cols=49 Identities=4% Similarity=0.252 Sum_probs=43.8
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
++..+..||..+.++..+|+.+|++.+|++...+.+.|..|. +.|++..
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMK--QAGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HHTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HcCCcce
Confidence 566777888888888899999999999999999999999999 8888875
No 107
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=75.82 E-value=1.9 Score=37.63 Aligned_cols=49 Identities=14% Similarity=0.405 Sum_probs=42.2
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+..+..||..+..++.+|+.+|++.+|++...+.+.|..|. +.|++.+.
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~~ 51 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALE--EKGIIEGY 51 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HHTSSCCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEecc
Confidence 44577788888777889999999999999999999999999 88888653
No 108
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=75.24 E-value=3.5 Score=39.78 Aligned_cols=55 Identities=15% Similarity=0.297 Sum_probs=45.3
Q ss_pred HHHHHhcCCC-CCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 500 VVLMLFNDAQ-KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 500 ~iLl~Fn~~~-~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
.||..|.+.+ .+|+.||++.+|+|...+.+.|..|. +.+++.+.+. +..|.+...
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~~~------~~~Y~lg~~ 65 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALE--EEFLVEALGP------AGGFRLGPA 65 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHH--TTTSEEECGG------GCEEEECSH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeCC------CCeEEECHH
Confidence 4777887654 79999999999999999999999999 9999988642 356777554
No 109
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=74.92 E-value=2.9 Score=36.95 Aligned_cols=49 Identities=12% Similarity=0.423 Sum_probs=43.7
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
++..+-.||..+.+...+|..+|++.+|++...+.+.+..|. +.|++.+
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLK--KLGIIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHH--HHTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 566777888888888899999999999999999999999999 8888864
No 110
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=74.76 E-value=4.7 Score=35.65 Aligned_cols=57 Identities=5% Similarity=0.029 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 498 QTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 498 Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
.+.+.+.-+....+|.++|++.+++|...+.+.|..|. +.+++....+ ++-|.+..+
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~--~~Glv~s~rG------~GGy~L~~~ 74 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLK--QAGFVYVNRG------PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEccC------CCceEeCCC
Confidence 34444444444579999999999999999999999999 8999876431 345666654
No 111
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=74.56 E-value=5.1 Score=31.29 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=32.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhc
Q 006074 500 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLAC 536 (662)
Q Consensus 500 ~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 536 (662)
.|--+.|+.+.+|+.+|++.+|++++++..++.-|..
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 3556677778999999999999999999999999984
No 112
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=74.55 E-value=2 Score=35.07 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=37.6
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
++....||..+-..++.++.||++.+|++...+.++|..|. +. ++...
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~--~~-lv~~~ 73 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMR--GK-VLKRN 73 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHB--TT-TBEEE
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HH-hhhhe
Confidence 45566677333344679999999999999999999999998 77 77643
No 113
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=74.09 E-value=1.8 Score=36.94 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=45.5
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhC----CCHHHHHHHhhHhhcCCccceecC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATG----IEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
.+|..|..||..+-+.+++|..||++.++ ++...+...|..|. +.|++.+.
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLY--KKEIIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHH--HCCceEEE
Confidence 46889999998888888999999999997 57999999999999 88999874
No 114
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=73.77 E-value=2.9 Score=37.03 Aligned_cols=49 Identities=14% Similarity=0.404 Sum_probs=43.5
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
++..+..||..+.++..+|+.+|++.+|++...+.+.|..|. +.+++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLR--ESGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHH--HHTSSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEE
Confidence 566777888888888899999999999999999999999999 7888865
No 115
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=73.76 E-value=5.8 Score=30.01 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecCCC
Q 006074 498 QTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFT 564 (662)
Q Consensus 498 Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f~ 564 (662)
--.|.-+|.++.-||+.+|.+.|+=|+..|+..|..++ ++.+.++ -.+.|.+-++|.
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia-----~~~k~g~-----~~~~weLKpEyr 66 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG-----VQNVKGI-----HKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC-----CCBCCTT-----CCCBBCCCCSSC
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH-----HHHcCCC-----CCCeeeCcHHHh
Confidence 34577889999999999999999999999999998776 4444332 124555555543
No 116
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=73.76 E-value=3.5 Score=35.92 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=44.9
Q ss_pred ecHHHHHHHHHhcC-CCCCCHHHHHHHhC----CCHHHHHHHhhHhhcCCccceecC
Q 006074 494 VSLFQTVVLMLFND-AQKLSFQDIKDATG----IEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~-~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+|..|..||..+-+ .+.+|..+|++.++ ++...+.+.|..|. +.+++.+.
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~r~ 61 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA--KKNLVLQI 61 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 68889999988877 57999999999997 89999999999999 88999875
No 117
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=73.09 E-value=3.7 Score=36.85 Aligned_cols=49 Identities=10% Similarity=0.276 Sum_probs=43.5
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
++..+..||..+.+...+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLE--DAGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEee
Confidence 566777888888888889999999999999999999999999 8888875
No 118
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=72.97 E-value=2.7 Score=41.13 Aligned_cols=56 Identities=14% Similarity=0.366 Sum_probs=46.8
Q ss_pred HHHHHhcCC-CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecCC
Q 006074 500 VVLMLFNDA-QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGF 563 (662)
Q Consensus 500 ~iLl~Fn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f 563 (662)
.||.+|.+. ..+|+.||++.+|+|...+.+.|..|. ..+++.+.+. +..|.+...+
T Consensus 10 ~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~--~~G~v~~~~~------~~~Y~lG~~~ 66 (260)
T 3r4k_A 10 TLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQ--EAGFVEQVEG------ARSYRLGPQV 66 (260)
T ss_dssp HHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHH--HTTSEEECSS------SSEEEECTTH
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEcCC------CCcEEcCHHH
Confidence 478888864 689999999999999999999999999 8999998652 3567776554
No 119
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=72.70 E-value=3.7 Score=36.20 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=38.9
Q ss_pred ecHHHHHHHHHhcCC-----CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCcccee
Q 006074 494 VSLFQTVVLMLFNDA-----QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ 543 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~-----~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~ 543 (662)
+|+.|..||...... +.+|..+|++.++++...+.+.+..|. +.+++.
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le--~~glVr 83 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMR--RDGLVR 83 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHH--HTTSBC
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEE
Confidence 578899999877654 359999999999999999999999999 777774
No 120
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.44 E-value=5.2 Score=32.45 Aligned_cols=53 Identities=11% Similarity=0.258 Sum_probs=45.6
Q ss_pred EEecHHHHHHHHHhcC--CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 492 LAVSLFQTVVLMLFND--AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 492 l~vs~~Q~~iLl~Fn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
-.++..|..|+-...+ .+.++..+|...++++...+.+.|..|. ..+++...+
T Consensus 33 ~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE--~k~lIK~Vk 87 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLE--SKKLIKAVK 87 (95)
T ss_dssp CSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHH--hCCCEEEec
Confidence 3568899999988876 5679999999999999999999999998 777777643
No 121
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=72.40 E-value=4.2 Score=34.64 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=39.6
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
++.+..||..+.+ +..++.+|++.+|++...+.++|..|. +.|++...
T Consensus 45 ~~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le--~~Glv~~~ 92 (122)
T 1r1t_A 45 DPNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLR--NLRLVSYR 92 (122)
T ss_dssp CHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 3446667766654 578999999999999999999999999 78888754
No 122
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=72.16 E-value=3.8 Score=34.50 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=40.4
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
+..|..||..+.+ +..|+.+|++.+|++...+.++|..|. +.+++..
T Consensus 31 ~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le--~~Glv~~ 77 (119)
T 2lkp_A 31 TPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLR--NLGLVVG 77 (119)
T ss_dssp CHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHH--HHCSEEE
T ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 3567788877776 679999999999999999999999999 7788765
No 123
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=71.74 E-value=2 Score=36.33 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=45.2
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhC----CCHHHHHHHhhHhhcCCccceecC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATG----IEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
.+|..|..||..+.+.+.+|..+|++.++ ++...+.+.|..|. +.+++.+.
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~--~~Glv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLY--KKGFIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHH--HCCCeEEE
Confidence 46888999998887778899999999999 78999999999999 88998864
No 124
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=70.13 E-value=4.2 Score=31.67 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=37.8
Q ss_pred hhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 602 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 602 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
.|...++.++.++.++|.. .|.+++..|.+-|+.|.++|+|+|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~------~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQ------TLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHH------HTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4667778888888888763 3789999999999999999999997
No 125
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=69.64 E-value=5.7 Score=34.92 Aligned_cols=55 Identities=16% Similarity=0.214 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 498 QTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 498 Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
.+.+.+.-+.. . |.++|++.+++|...|.+.|..|. +.+++....+ ++-|.+..+
T Consensus 13 ~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~--~aGlv~s~rG------~GGy~Lar~ 67 (145)
T 1xd7_A 13 HILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLK--KADILTSRAG------VPGASLKKD 67 (145)
T ss_dssp HHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECCSS------SSSCEESSC
T ss_pred HHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHH--HCCceEeecC------CCCceecCC
Confidence 34444454444 5 999999999999999999999999 9999976431 234666554
No 126
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=69.00 E-value=3.7 Score=33.03 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCC-CCCHHHHHHHhCCCHHH-HHHHhhHhhcCCcccee
Q 006074 498 QTVVLMLFNDAQ-KLSFQDIKDATGIEDKE-LRRTLQSLACGKVRVLQ 543 (662)
Q Consensus 498 Q~~iLl~Fn~~~-~~t~~ei~~~t~i~~~~-l~~~L~~L~~~k~~iL~ 543 (662)
+..+|..+...+ .+|..+|++.+|++... +.+.+..|. +.+++.
T Consensus 17 ~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le--~~Glv~ 62 (95)
T 2pg4_A 17 ILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLI--RAGLVK 62 (95)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHH--HTTSEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHH--HCCCee
Confidence 455666666665 89999999999999999 999999999 777776
No 127
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=68.36 E-value=3.8 Score=39.82 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=45.2
Q ss_pred ecHHHHHHHHHhcCCC--CCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQ--KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|+.|..||......+ .+|..+|++.++++...+.+.+..|. +.|++.+.+
T Consensus 156 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe--~~GlV~R~~ 208 (250)
T 1p4x_A 156 LSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLK--KQGYLIKER 208 (250)
T ss_dssp SCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeeC
Confidence 5788999998887654 59999999999999999999999999 899998865
No 128
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=67.90 E-value=5.3 Score=32.23 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=41.5
Q ss_pred hhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCce
Q 006074 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 658 (662)
Q Consensus 600 ~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 658 (662)
+..|...+.....++..+|...+.+ .+..+.+.+-+.|..|.++|||+|..+.+..+
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~--~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~ 66 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNA--EFPMSTATFYDAKKFLIQEGFVKERQERGEKR 66 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHCCCEEEEecCCceE
Confidence 3445555556678888888665544 45668999999999999999999976544333
No 129
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=67.68 E-value=2.5 Score=38.00 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=41.8
Q ss_pred ecHHHHHHHHHhcC--CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFND--AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+.. .+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 96 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD--DRGLVLRTR 96 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEeecC
Confidence 57789999988776 4589999999999999999999999999 889998754
No 130
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=67.14 E-value=6.8 Score=35.09 Aligned_cols=46 Identities=15% Similarity=0.389 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 497 FQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 497 ~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
....||..+.++..+|+.+|++.+|+++..+.+.+..|. +.|++..
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~--~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKME--EDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHH--HTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeee
Confidence 345688888888899999999999999999999999999 7888764
No 131
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=67.06 E-value=4.6 Score=31.32 Aligned_cols=52 Identities=13% Similarity=0.286 Sum_probs=41.3
Q ss_pred hhhhhhhhcCCC---CCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCc
Q 006074 600 DAAIVRIMKTRK---VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQI 657 (662)
Q Consensus 600 ~A~IVRimK~~k---~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~ 657 (662)
+-.|..+|+... .++..+|-..+ .++...|.++|..|.+.|+|++.++.|..
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~L------gvs~~tV~~~L~~L~~~G~I~~~g~~~~~ 70 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKL------GTPKKEINRVLYSLAKKGKLQKEAGTPPL 70 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHH------CCCHHHHHHHHHHHHHHTSEEEECSSSCE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEecCCCCCc
Confidence 345777888887 88988877554 46788999999999999999998766544
No 132
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=67.03 E-value=4.6 Score=33.44 Aligned_cols=43 Identities=16% Similarity=0.327 Sum_probs=35.8
Q ss_pred HHHHh-cCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 501 VLMLF-NDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 501 iLl~F-n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
|+..+ ..++.+|..+|++.+|++...+.++|..|. ..|++...
T Consensus 23 Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~--~~GlV~~~ 66 (110)
T 1q1h_A 23 VLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLE--EQGFVSYR 66 (110)
T ss_dssp HHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHH--HHTSCEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 44333 455579999999999999999999999999 88888764
No 133
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=66.81 E-value=3.1 Score=35.32 Aligned_cols=59 Identities=20% Similarity=0.345 Sum_probs=44.1
Q ss_pred hhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCceeec
Q 006074 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 661 (662)
Q Consensus 600 ~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 661 (662)
+..|.+++-.+..++..+|...+.. .-.++...+...|+.|.++|||+|..+++ .+.|.
T Consensus 12 q~~vL~~L~~~~~~t~~el~~~l~~--~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r-~~~~~ 70 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVSANEIVVEIQK--YKEVSDKTIRTLITRLYKKEIIKRYKSEN-IYFYS 70 (126)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhh--cCCCChhhHHHHHHHHHHCCceEEEeCCC-eEEEE
Confidence 4455666666778888888877643 22467899999999999999999987544 56664
No 134
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=66.05 E-value=1.1 Score=36.96 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=44.1
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhC----CCHHHHHHHhhHhhcCCccceecCC
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATG----IEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+|..|..||..+-+.+.+|..||++.++ ++...+.+.|..|. +.|++.+.+
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe--~KGlV~R~~ 87 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLV--KKEMLSTEK 87 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH--HTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH--HCCCEEEEe
Confidence 46777888888877777899999999997 46899999999999 889998754
No 135
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=65.49 E-value=4.3 Score=43.50 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=48.1
Q ss_pred EEecHHHHHHHHHhcCC--CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 492 LAVSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 492 l~vs~~Q~~iLl~Fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
..+|..|..||....++ +.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le--~~g~v~r~~ 454 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLK--DLKLLSKKR 454 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHH--TTTTSCCEE
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecC
Confidence 45789999999998887 899999999999999999999999999 999998754
No 136
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=65.37 E-value=3.9 Score=36.35 Aligned_cols=48 Identities=6% Similarity=0.134 Sum_probs=41.4
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
++....||..+. .+.+|+.+|++.+|++...+.++|..|. +.+++...
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~--~aGlV~~~ 104 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLT--EAGLVTPR 104 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 466777887776 4679999999999999999999999999 88998764
No 137
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=65.19 E-value=7.7 Score=37.50 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=44.2
Q ss_pred HHHHHHhcCCC-CCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 499 TVVLMLFNDAQ-KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 499 ~~iLl~Fn~~~-~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
..||..|.+.+ .+|+.||++.+|++...+.+.|..|. +.+++.+. .+..|.+...
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~-------~~~~Y~lg~~ 66 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLE--EKGFVLRK-------KDKRYVPGYK 66 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEC-------TTSCEEECTH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEC-------CCCcEEECHH
Confidence 35777787654 79999999999999999999999999 88999874 1345666543
No 138
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=64.75 E-value=4.8 Score=39.74 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=42.8
Q ss_pred HHHHHhcCCC-CCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 500 VVLMLFNDAQ-KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 500 ~iLl~Fn~~~-~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
.||.+|.+.. .+|+.||++.+|+|...+.+.|..|. ..+.|.+++ +..|.+-..
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~--~~G~v~~~~-------~~~Y~LG~~ 88 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMT--ELDLLARSA-------DGTLRIGPH 88 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHH--HTTSEEECT-------TSEEEECTH
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEECC-------CCcEEehHH
Confidence 4888888754 79999999999999999999999999 899999864 245666443
No 139
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=64.50 E-value=4.6 Score=32.16 Aligned_cols=45 Identities=7% Similarity=0.071 Sum_probs=37.3
Q ss_pred hhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 602 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 602 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
.|...++.++.++.++|.. .|.+++..|.+-|+.|.++|+|+|..
T Consensus 6 ~Il~~L~~~g~vsv~eLA~------~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSA------RLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHH------HTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4666777788888777663 37899999999999999999999973
No 140
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=63.58 E-value=4.8 Score=34.99 Aligned_cols=59 Identities=7% Similarity=0.116 Sum_probs=42.9
Q ss_pred hhhhhhhhhcC-CCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCceee
Q 006074 599 VDAAIVRIMKT-RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 660 (662)
Q Consensus 599 i~A~IVRimK~-~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 660 (662)
-+..|.+++-. ...++..+|...+... -.++...+...|+.|.++|||.|..+++ .+.|
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~--~~~~~~Tvt~~l~rLe~kGlv~r~~~~r-~~~~ 69 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSAR--RDLAYTTVMAVLQRLAKKNLVLQIRDDR-AHRY 69 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTT--CCCCHHHHHHHHHHHHHTTSEEEEC----CCEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcc--CCCCHHHHHHHHHHHHHCCCEEEEecCC-eEEE
Confidence 45566677766 5788998888766432 2467899999999999999999987544 5666
No 141
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=63.10 E-value=9.7 Score=29.53 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=43.6
Q ss_pred hhhhhhhcCC--CCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCceee
Q 006074 601 AAIVRIMKTR--KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 660 (662)
Q Consensus 601 A~IVRimK~~--k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 660 (662)
..|...+... +.++.++|...+.+.. ..++.+.|-+.++.|.+.|+|.|...+.+...|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~-~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMG-EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 4566666654 6899999998876532 356899999999999999999997643333444
No 142
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=63.10 E-value=7.4 Score=37.95 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=44.1
Q ss_pred HHHHHhcC-CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecC
Q 006074 500 VVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 562 (662)
Q Consensus 500 ~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 562 (662)
.||.+|.. ...+|+.||++.+|++...+.+.|..|. +.+++.+.+. + .|.+...
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~--~~G~v~~~~~------~-~Y~lg~~ 81 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMC--ARSVLTSRAD------G-SYSLGPE 81 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEECTT------S-CEEECHH
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEECCC------C-eEEecHH
Confidence 47777864 4689999999999999999999999999 8999988642 2 6777544
No 143
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=62.94 E-value=5.8 Score=33.24 Aligned_cols=50 Identities=22% Similarity=0.398 Sum_probs=43.8
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHh--CCCHHHHHHHhhHhhcCCccceecC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDAT--GIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t--~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
++...-.||.++.+...+|+.+|++.+ |++...+.++|..|. +.+++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le--~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLA--DHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEec
Confidence 456677788888776799999999999 999999999999999 89999864
No 144
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=62.86 E-value=6.2 Score=30.62 Aligned_cols=56 Identities=9% Similarity=0.023 Sum_probs=38.2
Q ss_pred hHhhhhhhhhhhhcCC--CCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCC
Q 006074 595 RQYQVDAAIVRIMKTR--KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQ 656 (662)
Q Consensus 595 r~~~i~A~IVRimK~~--k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~ 656 (662)
|...|=..|-+-++.+ ...+..||... +.+ ++..|.+-|..|.++|||+|+++.+.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~----lgv--S~~TVrr~L~~Le~kG~I~R~~ggr~ 62 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADA----AGL--SIYQVRLYLEQLHDVGVLEKVNAGKG 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHH----HTC--CHHHHHHHHHHHHHTTSEEEESCSSS
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHH----HCC--CHHHHHHHHHHHHHCCcEEecCCCCC
Confidence 4444444555444443 66777666543 344 67789999999999999999976543
No 145
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=62.64 E-value=9.1 Score=31.49 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHh-CCCHHHHHHHhhHhhcCCccceecC
Q 006074 497 FQTVVLMLFNDAQKLSFQDIKDAT-GIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 497 ~Q~~iLl~Fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+...||.... .+..++.||++.+ |++...+.+.|..|. +.+++.+.
T Consensus 15 ~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le--~~GlI~r~ 61 (107)
T 2hzt_A 15 WKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELE--ADGVINRI 61 (107)
T ss_dssp THHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 3445665554 4679999999999 999999999999999 89999874
No 146
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=62.25 E-value=8.1 Score=33.27 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=39.9
Q ss_pred EEecHHHHHHHHHh----cCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 492 LAVSLFQTVVLMLF----NDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 492 l~vs~~Q~~iLl~F----n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
..+|..|..+|..+ ..++.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 9 ~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le--~~Gli~r~ 64 (139)
T 2x4h_A 9 SNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLE--EKGLVKKK 64 (139)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred hhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHH--HCCCEEec
Confidence 34566666555444 345689999999999999999999999999 77888763
No 147
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=62.23 E-value=8.7 Score=30.09 Aligned_cols=52 Identities=13% Similarity=0.286 Sum_probs=41.3
Q ss_pred hhhhhhhhcCCC---CCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCc
Q 006074 600 DAAIVRIMKTRK---VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQI 657 (662)
Q Consensus 600 ~A~IVRimK~~k---~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~ 657 (662)
+-.|..+|+... .++..+|-.++ .++...|.++|..|.+.|+|++.+..+..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~L------gvsr~tV~~~L~~Le~~G~I~~~g~~~~~ 66 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKL------GTPKKEINRVLYSLAKKGKLQKEAGTPPL 66 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEESSSSCE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEecCCCCCe
Confidence 445777888877 89998887554 46788999999999999999987665543
No 148
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=61.90 E-value=6.2 Score=33.55 Aligned_cols=48 Identities=15% Similarity=0.340 Sum_probs=38.9
Q ss_pred hhhhhhhhhhcCCCC--CChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 598 QVDAAIVRIMKTRKV--LSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 598 ~i~A~IVRimK~~k~--l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
..+..|.+++..... ++..+|-..+ ..+.+.+-+.|+.|.++|||.|.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l------~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSL------KLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEee
Confidence 456777777776665 8999887655 35889999999999999999985
No 149
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=61.85 E-value=3.4 Score=40.23 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=46.0
Q ss_pred EecHHHHHHHHHhcCC--CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 493 AVSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+|..|..||....++ +++|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe--~~G~i~R~~ 84 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLV--KHSYISKVR 84 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHH--HTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEecC
Confidence 4688999999988764 589999999999999999999999999 889988754
No 150
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=61.44 E-value=14 Score=27.61 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=33.6
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
.+|.-|..|+.++ ..+.|..||++.+|++...+...+..+.
T Consensus 11 ~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 11 LLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3577788888777 4467999999999999999988887654
No 151
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=61.31 E-value=11 Score=34.95 Aligned_cols=49 Identities=8% Similarity=0.264 Sum_probs=42.0
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
.+..+..||.++.+ +.+|..+|++.+|++...+.+.|..|. +.|++...
T Consensus 18 ~d~~~~~IL~~L~~-~~~s~~eLA~~lglS~stv~~~l~~Le--~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLRN-KEMTISQLSEILGKTPQTIYHHIEKLK--EAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 35667778877764 689999999999999999999999999 88898765
No 152
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=61.18 E-value=11 Score=27.42 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHh-----CCCHHHHHHHhhHh
Q 006074 498 QTVVLMLFNDAQKLSFQDIKDAT-----GIEDKELRRTLQSL 534 (662)
Q Consensus 498 Q~~iLl~Fn~~~~~t~~ei~~~t-----~i~~~~l~~~L~~L 534 (662)
++.|+.+++..+.+|.+||++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 44455566667789999999999 99999999999844
No 153
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=60.79 E-value=5.5 Score=34.55 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=35.0
Q ss_pred HHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 503 MLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 503 l~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
.+....+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 15 ~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le--~~Glv~r~ 55 (142)
T 1on2_A 15 MLIEEKGYARVSDIAEALAVHPSSVTKMVQKLD--KDEYLIYE 55 (142)
T ss_dssp HHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 334455689999999999999999999999999 88888764
No 154
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=60.41 E-value=4.5 Score=32.53 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=37.4
Q ss_pred ecHHHHHHHHHhcC-CCC---CCHHHHHHHhCCCHHHHHHHhhHhhcCCccce
Q 006074 494 VSLFQTVVLMLFND-AQK---LSFQDIKDATGIEDKELRRTLQSLACGKVRVL 542 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~-~~~---~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL 542 (662)
++.-+..||+.+.. .+. +|..+|++.++++...+.+.|..|. +.+++
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv 60 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFE--EAKMV 60 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HTTSE
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCcCc
Confidence 45566677766532 233 9999999999999999999999999 77777
No 155
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=60.12 E-value=2.4 Score=38.78 Aligned_cols=51 Identities=8% Similarity=0.104 Sum_probs=44.1
Q ss_pred ecHHHHHHHHHhcCCC---CCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQ---KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|..|..||..+...+ .+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~~ 120 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLL--EKGLIERRE 120 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHH--HHTSEECCC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCEEecC
Confidence 5788999998876654 39999999999999999999999999 889998754
No 156
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=59.60 E-value=7.1 Score=32.50 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHh-CCCHHHHHHHhhHhhcCCccceecC
Q 006074 496 LFQTVVLMLFNDAQKLSFQDIKDAT-GIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 496 ~~Q~~iLl~Fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
.+...||....+ +.+++.+|++.+ |++...+.++|..|. +.+++.+.
T Consensus 22 ~~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le--~~GlI~r~ 69 (112)
T 1z7u_A 22 KWKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREME--KDGLVHRE 69 (112)
T ss_dssp TTHHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred ccHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 345556655544 679999999999 999999999999999 89999874
No 157
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=59.36 E-value=11 Score=32.59 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHh-CCCHHHHHHHhhHhhcCCccceecC
Q 006074 497 FQTVVLMLFNDAQKLSFQDIKDAT-GIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 497 ~Q~~iLl~Fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+...||.... .+..++.||++.+ |++...|.+.|..|. +.+++.+.
T Consensus 27 W~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le--~~GLV~R~ 73 (131)
T 4a5n_A 27 WKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELE--ADGIVHRE 73 (131)
T ss_dssp SHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHH--HCCCEEEE
Confidence 3455665555 5689999999999 999999999999999 88999874
No 158
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=59.31 E-value=9.4 Score=31.74 Aligned_cols=48 Identities=17% Similarity=0.433 Sum_probs=38.6
Q ss_pred cHHHHHHHHHhcCCCCCC--HHHHHHHh-CCCHHHHHHHhhHhhcCCccceecC
Q 006074 495 SLFQTVVLMLFNDAQKLS--FQDIKDAT-GIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t--~~ei~~~t-~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
......||....+ +..+ +.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 26 ~~wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 76 (111)
T 3df8_A 26 KKYTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLI--DSGLVERR 76 (111)
T ss_dssp STTHHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CccHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 3445567766654 4555 99999999 999999999999999 89999874
No 159
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=58.11 E-value=16 Score=28.36 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=33.5
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
.+|.-|..|+.++ ..++|.+||++.+|++...++..+....
T Consensus 21 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 21 QLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp GSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3577788888776 3568999999999999999988887654
No 160
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=57.50 E-value=15 Score=28.28 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=34.3
Q ss_pred hhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 602 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 602 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
.|.+.+...+.++..+|...+ ..+...+.+.+..|.+.|+|++.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~l------gvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEAL------AVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHH------TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEe
Confidence 456666666778888876543 45788999999999999999964
No 161
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=56.95 E-value=9.7 Score=37.21 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=44.7
Q ss_pred HHHHHhcC-CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecCC
Q 006074 500 VVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGF 563 (662)
Q Consensus 500 ~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f 563 (662)
.||.+|.+ ...+|+.||++.+|++...+.+.|..|. ..+++.+. +..|.+...+
T Consensus 25 ~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~--~~G~v~~~--------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 25 AVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLV--ELGYVATD--------GSAFWLTPRV 79 (265)
T ss_dssp HHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEES--------SSEEEECGGG
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEec--------CCEEEEcHHH
Confidence 47888875 4689999999999999999999999999 88999874 2567776543
No 162
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=56.16 E-value=11 Score=36.49 Aligned_cols=55 Identities=16% Similarity=0.334 Sum_probs=45.0
Q ss_pred HHHHHHhcCC-CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecCC
Q 006074 499 TVVLMLFNDA-QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGF 563 (662)
Q Consensus 499 ~~iLl~Fn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f 563 (662)
..||..|... ..+|+.||++.+|++...+.+.|..|. ..+++.+. +..|.+...+
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~--~~G~v~~~--------~~~Y~Lg~~~ 72 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQ--KLGYVAGS--------GGRWSLTPRV 72 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE--------TTEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeC--------CCEEEEcHHH
Confidence 3578888754 589999999999999999999999999 88999874 2567776553
No 163
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=55.84 E-value=27 Score=32.90 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=62.4
Q ss_pred ccCChhHHHHHHHHHHHHhhcCCCeeeEeccCCceEEEEEEecCceEEEE-----ecHHHHHHHHHhcCCCCCCHHHHHH
Q 006074 444 VRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELA-----VSLFQTVVLMLFNDAQKLSFQDIKD 518 (662)
Q Consensus 444 ~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~-----vs~~Q~~iLl~Fn~~~~~t~~ei~~ 518 (662)
..=|..+..+.+.++. +|..---.+|++|.+-++ .+..|..|+-.....+.+|..+++.
T Consensus 113 lVSp~Dl~~A~~~l~~----------------Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~~~g~vt~~~la~ 176 (218)
T 3cuq_B 113 LLSPEDLVNACKMLEA----------------LKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAK 176 (218)
T ss_dssp CCCHHHHHHHHHTTTT----------------TTCSEEEEECTTSBEEEEETTCCGGGGHHHHHHHHHHTSCBCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----------------cCCCEEEEEECCCcEEEEcCCCchHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 4567888888775543 333221223555554443 2468999988788788999999999
Q ss_pred HhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 519 ATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 519 ~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+|.+....+..|..+. +.+++..+.
T Consensus 177 ~l~ws~~~a~e~L~~~e--~~G~l~~D~ 202 (218)
T 3cuq_B 177 LVGMSVLLAKERLLLAE--KMGHLCRDD 202 (218)
T ss_dssp HHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred HhCCCHHHHHHHHHHHH--HcCCEEEEC
Confidence 99999999999999999 888988763
No 164
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=55.52 E-value=20 Score=31.24 Aligned_cols=65 Identities=14% Similarity=0.245 Sum_probs=50.4
Q ss_pred EEecHHHHHHHHHhcC-CCCCCHHHHHHHh-----CCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEec
Q 006074 492 LAVSLFQTVVLMLFND-AQKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 561 (662)
Q Consensus 492 l~vs~~Q~~iLl~Fn~-~~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 561 (662)
+.+|.-...||..+.+ ...+|.+||.+.+ +++...+-++|..|. ..+++.+...+ .....|..+.
T Consensus 18 ~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~~~~---~~~~~Y~~~~ 88 (145)
T 2fe3_A 18 VRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFR--ESGLVKELTYG---DASSRFDFVT 88 (145)
T ss_dssp CCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHH--HTTSEEEECCT---TSCCEEEECC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHH--HCCCEEEEeeC---CCceEEECCC
Confidence 3567778888877754 4579999999998 899999999999999 89999875421 1235677764
No 165
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=55.05 E-value=12 Score=32.12 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=39.3
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHh-CCCHHHHHHHhhHhhcCCccceecC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDAT-GIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
..+...||.... .+.+++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le--~~GlV~r~ 82 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALE--QDGFLNRV 82 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHH--HHTCEEEE
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCcEEEE
Confidence 344455665555 4689999999999 799999999999999 89999864
No 166
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=54.80 E-value=6.5 Score=33.04 Aligned_cols=57 Identities=25% Similarity=0.459 Sum_probs=41.7
Q ss_pred hhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCceeec
Q 006074 602 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 661 (662)
Q Consensus 602 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 661 (662)
.|..++...+.++..+|...+-.. ..++.+.+-..|+.|.++|||+|..+|+ .+.|+
T Consensus 14 ~vL~~l~~~~~~t~~ela~~l~~~--~~~s~~tv~~~l~~L~~~Glv~r~~~~r-r~~~~ 70 (123)
T 1okr_A 14 EVMNIIWMKKYASANNIIEEIQMQ--KDWSPKTIRTLITRLYKKGFIDRKKDNK-IFQYY 70 (123)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHTSEEEEEETT-EEEEE
T ss_pred HHHHHHHhCCCcCHHHHHHHHhcc--CCCcHhhHHHHHHHHHHCCCeEEEecCC-eEEEE
Confidence 344445446788999988776543 2367899999999999999999987653 45554
No 167
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=54.46 E-value=20 Score=27.62 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=32.8
Q ss_pred HHHHHhcCCCCCCHHHHHHHhCC-CHHHHHHHhhHhhc
Q 006074 500 VVLMLFNDAQKLSFQDIKDATGI-EDKELRRTLQSLAC 536 (662)
Q Consensus 500 ~iLl~Fn~~~~~t~~ei~~~t~i-~~~~l~~~L~~L~~ 536 (662)
.|--+.|+.+.+|+.+|++.+|+ ++.++..++.-|..
T Consensus 14 ~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 45567788889999999999999 99999999998884
No 168
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=52.88 E-value=20 Score=27.12 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=32.1
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
+|.-|-.|+.++ ...+|.+||++.+|++...++..+....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777776 4578999999999999999888876654
No 169
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=52.61 E-value=17 Score=32.42 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=41.7
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
+|..|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|-
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeeec
Confidence 577899999999999999988665 57899999999999999999974
No 170
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=52.54 E-value=12 Score=35.89 Aligned_cols=44 Identities=11% Similarity=0.373 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 499 TVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 499 ~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+.|+... .+++.|.++|++.+|+|+..+..+|..|. +.+++.+.
T Consensus 168 ~~l~~~l-~~~~~t~~~la~~~~l~~~~V~~~l~~L~--~~~~v~~~ 211 (232)
T 2qlz_A 168 AILHYLL-LNGRATVEELSDRLNLKEREVREKISEMA--RFVPVKII 211 (232)
T ss_dssp HHHHHHH-HSSEEEHHHHHHHHTCCHHHHHHHHHHHT--TTSCEEEE
T ss_pred HHHHHHH-hcCCCCHHHHHHHhCcCHHHHHHHHHHHH--hcCCeEEe
Confidence 3344444 44688999999999999999999999999 88888653
No 171
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=52.38 E-value=14 Score=30.23 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=36.5
Q ss_pred HHHHHHhcCCCCCCHHHHHHHh-CCCHHHHHHHhhHhhcCCccceecC
Q 006074 499 TVVLMLFNDAQKLSFQDIKDAT-GIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 499 ~~iLl~Fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
..||.... .+..++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 28 ~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 72 (107)
T 2fsw_A 28 LLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLC--GKGLIKKK 72 (107)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 34555554 4679999999999 599999999999999 88998864
No 172
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=52.35 E-value=22 Score=28.25 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=35.7
Q ss_pred EEEecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 491 ELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 491 ~l~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
...+|.-|..||.++- .++|..||++.+|++...++.++..+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3467888888888876 468999999999999999999988775
No 173
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=51.73 E-value=17 Score=28.91 Aligned_cols=55 Identities=9% Similarity=0.131 Sum_probs=41.7
Q ss_pred hhhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCce
Q 006074 598 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 658 (662)
Q Consensus 598 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 658 (662)
..+..|.+.+.....++..+|...+ ..+.+.+-+.+..|.+.|+|.+..+++..+
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~l------~is~~tvs~~l~~L~~~glv~~~~~~r~~~ 78 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRIT------GLSASATSQHLARMRDEGLIDSQRDAQRIL 78 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHH------CCCHHHHHHHHHHHHHTTSEEEEECSSCEE
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 3455677777777788888876544 457889999999999999999876554443
No 174
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.66 E-value=27 Score=30.04 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=49.9
Q ss_pred EEecHHHHHHHHHhcCC--CCCCHHHHHHHh-----CCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEec
Q 006074 492 LAVSLFQTVVLMLFNDA--QKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 561 (662)
Q Consensus 492 l~vs~~Q~~iLl~Fn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 561 (662)
+.+|.-...||..+.+. ..+|.+||.+.+ +++...+-++|..|. ..+++.+...+ .....|.++.
T Consensus 14 ~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~~~~---~~~~~Y~~~~ 85 (136)
T 1mzb_A 14 LKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFE--AAGLVVRHNFD---GGHAVFELAD 85 (136)
T ss_dssp CCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTSEEEECSS---SSSCEEEESS
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH--HCCcEEEEEeC---CCceEEEeCC
Confidence 35677778888777654 579999999998 899999999999999 89999875421 1225677753
No 175
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=51.59 E-value=17 Score=31.86 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 497 FQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 497 ~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+...||.... .+..++.||++.+|++...+.+.|..|. +.+++.+.+
T Consensus 25 w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le--~~GlI~r~~ 71 (146)
T 2f2e_A 25 WSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLV--EHGVMVAVP 71 (146)
T ss_dssp SHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred hHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEEe
Confidence 3444554443 3579999999999999999999999999 899998754
No 176
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=51.57 E-value=18 Score=28.93 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=34.2
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
.+|.-|..|+.++ ...+|..||++.+|++...++..+....
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4678888888777 4578999999999999999988887664
No 177
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=51.12 E-value=53 Score=35.55 Aligned_cols=117 Identities=21% Similarity=0.217 Sum_probs=73.0
Q ss_pred CCCHHHHHHH----hCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEecCCCCCcceEEecccccccchhhhh
Q 006074 510 KLSFQDIKDA----TGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENT 585 (662)
Q Consensus 510 ~~t~~ei~~~----t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f~~~~~~i~i~~~~~~~~~~e~~ 585 (662)
++|+.+|.+. .+++.+.+.++|.-|+.+..+++.+.+.+ .++.|.||.. ..+ ..=..
T Consensus 287 ~is~~~I~~~l~~~~~l~~~~l~~~L~lL~~~~~~fv~~~g~~----g~g~y~V~~~----------~~~-----~~lr~ 347 (534)
T 2xub_A 287 PLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDS----GGGMYVINLH----------KAL-----ASLAT 347 (534)
T ss_dssp CEEHHHHHHTSCTTCCCCHHHHHHHHHHHHSCTTCCEEECCCC----SSCEEEEBHH----------HHH-----HHHHH
T ss_pred cccHHHHHHHcCCcccccHHHHHHHHHHHhCCcHHhhhccccC----CCceEEEeHH----------HHH-----HHHHH
Confidence 3444444443 35678889999999987667788876432 3567777653 000 00012
Q ss_pred hhhHHHHHhhHhhhhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 586 STTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 586 ~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
..-+.+..+|--..=+-|+|+|..++.++-++|-+.+ ..+..++++.+-.|.+.||+.-.
T Consensus 348 ~~ie~ii~~~~G~~a~RI~r~L~~~~~l~d~~ia~~a------~i~~k~vR~~Ly~L~~~g~v~~q 407 (534)
T 2xub_A 348 ATLESVVQERFGSRCARIFRLVLQKKHIEQKQVEDFA------MIPAKEAKDMLYKMLSENFMSLQ 407 (534)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHC---CHHHHHHHH------CSCHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHcCCCCHHHHHHHh------CCCHHHHHHHHHHHHHCCCeEEE
Confidence 2234455555555455599999998888888877655 34588999999999999998754
No 178
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=50.60 E-value=11 Score=35.11 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=41.2
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
++.+..||.++. .+++|+.+|++.+|++...+.++|..|. +.|++...
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le--~~GLV~~~ 61 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILE--EAGLIESR 61 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEE
Confidence 456777887775 4689999999999999999999999999 89998864
No 179
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=49.77 E-value=12 Score=32.46 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCCCChhhHHHHHHhhhhhccccc
Q 006074 627 KFPIKPADLKKRIESLIDREYLER 650 (662)
Q Consensus 627 ~F~~~~~~ik~~Ie~Liereyi~r 650 (662)
++..++..|.+.|..|+++|||++
T Consensus 60 ~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 60 GMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp TSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEE
Confidence 467789999999999999999999
No 180
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=48.94 E-value=13 Score=26.08 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCcCChHHHHHHHHHHhhhh--ccH
Q 006074 91 VEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG--IYS 131 (662)
Q Consensus 91 ~~~~l~~~ll~~I~~~R~g~~i~~~~ik~~i~ml~~l~--~Y~ 131 (662)
+++++.+.+-+++.+.|....-|. -..++..||.+|| +|+
T Consensus 8 ~s~~v~~~I~~iVe~r~qeGA~dv-s~Ssv~smLleLGLrVYe 49 (52)
T 3omy_A 8 VNNNVYEQITDLVTIRKQEGIEEA-SLSNVSSMLLELGLRVYM 49 (52)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTTC-CHHHHHHHHHHHHHHHHH
T ss_pred echHHHHHHHHHHHHHHHcCcccc-cHHHHHHHHHHhhhhhhh
Confidence 346677778888888887665222 2568899999998 665
No 181
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=47.16 E-value=34 Score=25.15 Aligned_cols=41 Identities=7% Similarity=0.129 Sum_probs=29.7
Q ss_pred ecHHHHHHHHHhc---CCCCCCHHHHHHHhCCCHHHHHHHhhHh
Q 006074 494 VSLFQTVVLMLFN---DAQKLSFQDIKDATGIEDKELRRTLQSL 534 (662)
Q Consensus 494 vs~~Q~~iLl~Fn---~~~~~t~~ei~~~t~i~~~~l~~~L~~L 534 (662)
+|.-|-.|+.+.- +.+..|++||++.+|++...++..+..-
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555666664433 2467999999999999999888776544
No 182
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=46.88 E-value=22 Score=28.59 Aligned_cols=43 Identities=9% Similarity=0.107 Sum_probs=36.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 499 TVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 499 ~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+-||.....+ ++..+|+..+|+++..+.+.+..|. +.+++.+.
T Consensus 11 ~~IL~~i~~~--~~~t~La~~~~ls~~~~~~~l~~L~--~~GLI~~~ 53 (95)
T 1r7j_A 11 QAILEACKSG--SPKTRIMYGANLSYALTGRYIKMLM--DLEIIRQE 53 (95)
T ss_dssp HHHHHHHTTC--BCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHcC--CCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 4566666643 8999999999999999999999999 88898864
No 183
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=46.86 E-value=13 Score=32.44 Aligned_cols=51 Identities=10% Similarity=0.317 Sum_probs=35.8
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccc----cCCCCC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER----DKNNPQ 656 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r----~~~~~~ 656 (662)
-+..|...+ ..+.++..+|-..+ ..+.+.+-+.|..|.++|||+| ++.|+.
T Consensus 39 ~q~~iL~~l-~~~~~t~~eLa~~l------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 39 EQSHVLNML-SIEALTVGQITEKQ------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHHH------CSCSSHHHHHHHHHHHTTSEEC----------
T ss_pred HHHHHHHHH-HcCCcCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCC
Confidence 455566777 77889988877554 4567789999999999999998 666654
No 184
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=44.74 E-value=9.7 Score=30.99 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=35.2
Q ss_pred HhcCCCCC-CHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 504 LFNDAQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 504 ~Fn~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+..++.+ |..+|++.+|++...+.++|..|. ..+++...+
T Consensus 28 ~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~--~~Gli~~~~ 69 (102)
T 1v4r_A 28 ELAPGDTLPSVADIRAQFGVAAKTVSRALAVLK--SEGLVSSRG 69 (102)
T ss_dssp SCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTT--TSSCCEEET
T ss_pred CCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeC
Confidence 34455677 999999999999999999999999 889988764
No 185
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=44.17 E-value=18 Score=33.29 Aligned_cols=46 Identities=7% Similarity=0.071 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 497 FQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 497 ~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
=|..|+.+.++++.+|.+||++.+++++..+++=|.-|. ...++.+
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~--~~~l~~r 58 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLN--IPELRKR 58 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHT--CCCHHHH
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhc--CcchhhH
Confidence 367789999999999999999999999999999999997 4444443
No 186
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=43.04 E-value=23 Score=30.21 Aligned_cols=51 Identities=24% Similarity=0.256 Sum_probs=42.3
Q ss_pred ecHHHHHHHHHhcC-CCCCCHHHHHHHh-----CCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFND-AQKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~-~~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+|.--..||..|.+ .+.+|.+||.+.+ +++...+-++|..|. ..+++.+..
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~--e~Glv~~~~ 65 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMA--SSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH--TTTSEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCCEEEEE
Confidence 45666778877654 4589999999998 899999999999999 999998753
No 187
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=42.21 E-value=36 Score=26.53 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=28.6
Q ss_pred ecHHHHHHHHH-h--cCCCCCCHHHHHHHhCCCHHHHHHHhhHh
Q 006074 494 VSLFQTVVLML-F--NDAQKLSFQDIKDATGIEDKELRRTLQSL 534 (662)
Q Consensus 494 vs~~Q~~iLl~-F--n~~~~~t~~ei~~~t~i~~~~l~~~L~~L 534 (662)
+|.-|-.|+.+ | .+...+|++||++.+|++...++..+..-
T Consensus 19 L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra 62 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKA 62 (87)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555555543 3 33367999999999999998887766433
No 188
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=42.00 E-value=38 Score=22.33 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=25.5
Q ss_pred HHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHh
Q 006074 500 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSL 534 (662)
Q Consensus 500 ~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 534 (662)
.|+.++.+ .+|..+|++.+|++...+.+.+...
T Consensus 13 ~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 13 QLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 45555543 4799999999999999988877644
No 189
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=41.72 E-value=34 Score=27.75 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=27.4
Q ss_pred ecHHHHHHH-HHh--cCCCCCCHHHHHHHhCCCHHHHHHHhh
Q 006074 494 VSLFQTVVL-MLF--NDAQKLSFQDIKDATGIEDKELRRTLQ 532 (662)
Q Consensus 494 vs~~Q~~iL-l~F--n~~~~~t~~ei~~~t~i~~~~l~~~L~ 532 (662)
+|.-|-.|+ +.| ++.+.+|++||++.+|++...++..+.
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444454 444 234689999999999999988776653
No 190
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=41.56 E-value=25 Score=25.04 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=26.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 500 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 500 ~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
.|+.++- .++|..||++.+|+++..++.++....
T Consensus 5 ~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 5 QVLKLID--EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444443 357999999999999999998887665
No 191
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=41.29 E-value=25 Score=30.43 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=35.2
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccc
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 650 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r 650 (662)
-+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||+|
T Consensus 42 ~~~~iL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 42 QQLAMINVIYSTPGISVADLTKRL------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEe
Confidence 345556666666778877776544 4578899999999999999999
No 192
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=40.85 E-value=28 Score=30.62 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=42.9
Q ss_pred EEecHHHHHHHHHhcC-CCCCCHHHHHHHh-----CCCHHHHHHHhhHhhcCCccceecC
Q 006074 492 LAVSLFQTVVLMLFND-AQKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 492 l~vs~~Q~~iLl~Fn~-~~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+.+|.-...||..+.+ .+.+|.+||.+.+ +++...+-++|..|. ..+++.+.
T Consensus 23 ~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~ 80 (150)
T 2xig_A 23 LKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLE--KENFISVL 80 (150)
T ss_dssp --CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCcEEEE
Confidence 4567778888877754 4589999999988 799999999999999 89998874
No 193
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=40.80 E-value=19 Score=28.43 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=31.8
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
+|.-|..|+.++ ..++|..||++.+|++...++.++....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777666 3568999999999999999988887664
No 194
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=40.75 E-value=9.5 Score=27.06 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhCCCcCChH-HHHHHHHHHhhhh--ccHHhh
Q 006074 93 HKTVTGLLRMIERERLGEAVDRT-LLNHLLKMFTALG--IYSESF 134 (662)
Q Consensus 93 ~~l~~~ll~~I~~~R~g~~i~~~-~ik~~i~ml~~l~--~Y~~~f 134 (662)
+++.+.+-+++...|....-+.+ -+.++..||.+|| +|+-.-
T Consensus 9 ~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLGLrVYe~q~ 53 (55)
T 1dp3_A 9 DEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQM 53 (55)
T ss_dssp CTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHTTSHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhHHHHHHhh
Confidence 44556666777777765442211 2557899999998 776443
No 195
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=40.50 E-value=29 Score=31.89 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=40.5
Q ss_pred ecHHHHHHHHHhcC-----CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCC
Q 006074 494 VSLFQTVVLMLFND-----AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPK 547 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~-----~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~ 547 (662)
+|.-|..||....+ +...|+.||++.+|++...+.++|..|. +.+.+.+.+.
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le--~~G~i~~~~~ 59 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALE--KKGYIERKNG 59 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECC--
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHH--HCCCEEecCC
Confidence 45667777755432 2368999999999999999999999999 8888887653
No 196
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=40.32 E-value=36 Score=27.02 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=41.5
Q ss_pred hhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCceee
Q 006074 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 660 (662)
Q Consensus 600 ~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 660 (662)
...|++.+.. +.++..+|...+ ..+.+.+-+.+..|.+.|+|++..+.+..|.+
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~ 78 (98)
T 3jth_A 25 RLQILCMLHN-QELSVGELCAKL------QLSQSALSQHLAWLRRDGLVTTRKEAQTVYYT 78 (98)
T ss_dssp HHHHHHHTTT-SCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEECCTTCCEEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 4457777766 788888877654 45788999999999999999988766655543
No 197
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=39.75 E-value=26 Score=32.86 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=37.4
Q ss_pred HHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 501 VLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 501 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
|+.+-.+++.++..+|++.+|++...+.++|..|. +.+++.+.+
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le--~~GlV~r~~ 54 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL--AEELLIKDK 54 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEEec
Confidence 44444566789999999999999999999999999 888988753
No 198
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=39.70 E-value=19 Score=27.67 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=31.3
Q ss_pred HHHHHhcCC-CCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 500 VVLMLFNDA-QKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 500 ~iLl~Fn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
.||-.+.+. ..++..+|++.+|++..++.++|..|-
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 466666654 689999999999999999999999997
No 199
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=39.58 E-value=23 Score=30.94 Aligned_cols=40 Identities=15% Similarity=0.342 Sum_probs=33.6
Q ss_pred HhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 504 LFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 504 ~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
....++.+|..+|++.+|++...+.++|..|. +.+++.+.
T Consensus 48 ~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le--~~Glv~r~ 87 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGVSQPTVAKMLKRLA--TMGLIEMI 87 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHH--HTTCEEEE
T ss_pred HHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 34444678999999999999999999999999 77887764
No 200
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=39.48 E-value=18 Score=29.03 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=37.9
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
.+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|+|.|..
T Consensus 21 ~~~~il~~l~~~~~~s~~ela~~l------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLERGGMRVSEIAREL------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 455666666666778888877554 567899999999999999999964
No 201
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.78 E-value=25 Score=30.88 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=44.2
Q ss_pred EEecHHHHHHHHHhcCC--CCCCHHHHHHHh-----CCCHHHHHHHhhHhhcCCccceecC
Q 006074 492 LAVSLFQTVVLMLFNDA--QKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 492 l~vs~~Q~~iLl~Fn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+.+|.-...||..+.+. ..+|.+||.+.+ +++...+-++|..|. ..+++.+.
T Consensus 13 ~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~ 71 (150)
T 2w57_A 13 LKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFD--DAGIVTRH 71 (150)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH--HCCcEEEE
Confidence 35677788899887654 579999999988 899999999999999 89998875
No 202
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=38.66 E-value=57 Score=27.07 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=47.8
Q ss_pred hHhhhhhhhhhhhcCCCCCChHHHHHHHHHhc--CCCCChhhHHHHHHhhhhhcccccc
Q 006074 595 RQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 595 r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
++-.++.+|..++.. +.++--+|...+.+.. .+.++...+-..+..|.++|+|++.
T Consensus 9 ~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 9 LRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 455688999999974 7788889998887766 4789999999999999999999985
No 203
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=38.65 E-value=33 Score=23.93 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=34.3
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHhccchhHhHHHHHhhHH
Q 006074 358 DLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIE 401 (662)
Q Consensus 358 ~La~RLL~~~s~s~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~ 401 (662)
-+.+|++...-...+.-..|+..|+..-|......+.+|++-+-
T Consensus 5 sViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 5 SVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 46778887655667777889999988888888888888887654
No 204
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=38.63 E-value=84 Score=21.60 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHhh
Q 006074 509 QKLSFQDIKDATGIEDKELRRTLQ 532 (662)
Q Consensus 509 ~~~t~~ei~~~t~i~~~~l~~~L~ 532 (662)
..+|..+|++.+|++...+.+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 357999999999999998887764
No 205
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=38.31 E-value=35 Score=34.27 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCcccee
Q 006074 496 LFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ 543 (662)
Q Consensus 496 ~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~ 543 (662)
.-+..||.++++...+|.++|++.+|++...+.+.|..|. ..+++.
T Consensus 5 ~r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~--~~G~~i 50 (321)
T 1bia_A 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLR--DWGVDV 50 (321)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHH--HTTCCC
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHH--hCCCcE
Confidence 3456678888888899999999999999999999999998 666654
No 206
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=37.79 E-value=46 Score=24.79 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=27.5
Q ss_pred cHHHHHHHHH-h--cCCCCCCHHHHHHHhCCCHHHHHHHhhH
Q 006074 495 SLFQTVVLML-F--NDAQKLSFQDIKDATGIEDKELRRTLQS 533 (662)
Q Consensus 495 s~~Q~~iLl~-F--n~~~~~t~~ei~~~t~i~~~~l~~~L~~ 533 (662)
+.-|-.|+.+ | .+....|.+||++.+|++...++..+..
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555533 3 2235799999999999999888776543
No 207
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=37.63 E-value=41 Score=29.42 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=37.3
Q ss_pred hhhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 598 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 598 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
.-+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERS------FIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH------TSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCcCeEecC
Confidence 3455666677777788888876543 457888999999999999999854
No 208
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=37.35 E-value=15 Score=30.06 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=36.4
Q ss_pred HHHHhcCCCCC-CHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 501 VLMLFNDAQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 501 iLl~Fn~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
|+-.+..++.+ |..+|++.+|++...+.++|..|. ..+++...+
T Consensus 33 I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~--~~GlI~~~~ 77 (102)
T 2b0l_A 33 IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLE--SAGVIESRS 77 (102)
T ss_dssp HTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred HHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 33445555667 999999999999999999999999 888887654
No 209
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=36.72 E-value=38 Score=28.83 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=34.6
Q ss_pred hhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 600 ~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
+..|...+.... ++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 40 ~~~iL~~l~~~~-~t~~eLa~~l------~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 40 QEHILMLLSEES-LTNSELARRL------NVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHHTTCC-CCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHhCC-CCHHHHHHHH------CCCHHHHHHHHHHHHHCCCeEecc
Confidence 344555666666 8888877654 457889999999999999999865
No 210
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=36.72 E-value=42 Score=29.10 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=39.4
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
++..|.+.+.....++..+|-..+ ..+.+.+.++|..|.++|+|+|-
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREI------RIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHH------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCcEEEE
Confidence 456688888888889999987665 46799999999999999999983
No 211
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=36.47 E-value=33 Score=29.37 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=38.9
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
++..|.+.+.....++..+|-..+ ..+...+.+++..|.+.|+|+|..
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL------GISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEeccc
Confidence 455677788777788988887655 458999999999999999998753
No 212
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=35.86 E-value=41 Score=27.18 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=33.0
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
.+|.-|..||.++- ..+|.+||++.+|++...++..+..+.
T Consensus 34 ~Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 34 RLSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp SCCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35777777776664 468999999999999999988887665
No 213
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=35.42 E-value=52 Score=25.83 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=28.0
Q ss_pred ecHHHHHHHHH-hcCCCCCCHHHHHHHhCCCHHHHHHHhhHh
Q 006074 494 VSLFQTVVLML-FNDAQKLSFQDIKDATGIEDKELRRTLQSL 534 (662)
Q Consensus 494 vs~~Q~~iLl~-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 534 (662)
++.-|-.|+.+ |- ..+|+.||++.+|++...++..+..-
T Consensus 38 L~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 38 LSAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555544 43 35899999999999998888776543
No 214
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=35.30 E-value=29 Score=33.57 Aligned_cols=38 Identities=13% Similarity=0.371 Sum_probs=29.4
Q ss_pred HHHHHHH-hcCCCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 498 QTVVLML-FNDAQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 498 Q~~iLl~-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
...|+-. .+....+|+++|++.|||..+++..+|+.|-
T Consensus 195 ~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l~ 233 (276)
T 3to7_A 195 SDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLN 233 (276)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 3344433 3344689999999999999999999998874
No 215
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=34.93 E-value=28 Score=29.67 Aligned_cols=46 Identities=9% Similarity=0.189 Sum_probs=32.7
Q ss_pred hhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 601 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 601 A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 40 ~~iL~~l~~~~~~t~~eLa~~l------~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 40 WSVLEGIEANEPISQKEIALWT------KKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHHH------CCCHhhHHHHHHHHHHCCCeeccC
Confidence 3344444444666666665443 567889999999999999999864
No 216
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=34.86 E-value=36 Score=29.40 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=38.5
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
++-.|.+.+.....++..+|-..+ ..+.+.+.++|..|.++|+|+|.
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKI------KLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 345677788777889998887655 46899999999999999999873
No 217
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=34.64 E-value=36 Score=27.15 Aligned_cols=44 Identities=9% Similarity=0.170 Sum_probs=33.2
Q ss_pred hhhhhhhcC--CCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccc
Q 006074 601 AAIVRIMKT--RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 650 (662)
Q Consensus 601 A~IVRimK~--~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r 650 (662)
..|.+++.. .+.+...+|-..+ ..+...+..+|..|.++|||+|
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~------~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKS------NLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHT------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEE
Confidence 445555555 5578887776543 5678889999999999999994
No 218
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=33.72 E-value=45 Score=33.72 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=39.9
Q ss_pred HHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEec
Q 006074 501 VLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 561 (662)
Q Consensus 501 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 561 (662)
|+..+.+ +..|++||++.+|+++..+.+.|..|+ ..+++.+. ++.|..+.
T Consensus 56 if~~L~~-~~~t~~eLA~~~g~~~~~l~rlLr~L~--~~gll~~~--------~~~y~~t~ 105 (359)
T 1x19_A 56 LFSHMAE-GPKDLATLAADTGSVPPRLEMLLETLR--QMRVINLE--------DGKWSLTE 105 (359)
T ss_dssp HHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE--------TTEEEECH
T ss_pred cHHHHcC-CCCCHHHHHHHhCcChHHHHHHHHHHH--hCCCeEee--------CCeEecCH
Confidence 3334443 689999999999999999999999999 88999874 24677664
No 219
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=33.61 E-value=42 Score=29.02 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=38.0
Q ss_pred hhhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 598 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 598 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
.-+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 43 ~~~~~iL~~l~~~~~~t~~ela~~l------~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 43 VPEWRVLACLVDNDAMMITRLAKLS------LMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHHHHHSSCSCBCHHHHHHHT------TCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEecc
Confidence 3455667777777788887776432 567899999999999999999964
No 220
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=33.56 E-value=32 Score=24.70 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=30.9
Q ss_pred cCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCcccee
Q 006074 506 NDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ 543 (662)
Q Consensus 506 n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~ 543 (662)
|.++-+.++.+++..|++.+++...|..|. ..+++.
T Consensus 21 ~sGGildI~~~a~kygV~kdeV~~~LrrLe--~KGLI~ 56 (59)
T 2xvc_A 21 NNGGFLDIEHFSKVYGVEKQEVVKLLEALK--NKGLIA 56 (59)
T ss_dssp HTTSEEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEE
T ss_pred HcCCEEeHHHHHHHhCCCHHHHHHHHHHHH--HCCCee
Confidence 456678999999999999999999999998 666654
No 221
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=33.52 E-value=26 Score=29.88 Aligned_cols=26 Identities=8% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCCCChhhHHHHHHhhhhhccccccC
Q 006074 627 KFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 627 ~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
+...+...|.++|..|+++|||+|..
T Consensus 60 ~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 60 RMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp TSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 35678999999999999999999954
No 222
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=33.31 E-value=38 Score=34.48 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=40.1
Q ss_pred HHHHhcC-CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEec
Q 006074 501 VLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 561 (662)
Q Consensus 501 iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 561 (662)
|...+.+ .+.+|++||++.+|+++..+.+.|..|+ ..+++.+. ++.|..+.
T Consensus 40 ifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~--~~g~l~~~--------~~~y~~t~ 91 (363)
T 3dp7_A 40 IFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASL--TIGTILLE--------EDRYVLAK 91 (363)
T ss_dssp HHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEEE--------TTEEEECH
T ss_pred HHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHh--hCCCeEec--------CCEEeccc
Confidence 3444445 4689999999999999999999999999 78899763 35666654
No 223
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=33.29 E-value=44 Score=28.42 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=36.2
Q ss_pred hhhhhhhc-CCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc--CCCCCc
Q 006074 601 AAIVRIMK-TRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQI 657 (662)
Q Consensus 601 A~IVRimK-~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~--~~~~~~ 657 (662)
..|..++- ....++..+|...+ ..+.+.+-+.+..|.++|||+|. ++|+..
T Consensus 29 ~~il~~L~~~~~~~t~~ela~~l------~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~ 82 (152)
T 1ku9_A 29 GAVYAILYLSDKPLTISDIMEEL------KISKGNVSMSLKKLEELGFVRKVWIKGERKN 82 (152)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEECCTTCSSC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEEecCCCceE
Confidence 33444442 35678888877554 45788999999999999999996 344443
No 224
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=33.29 E-value=32 Score=29.33 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=37.7
Q ss_pred hhhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 598 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 598 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
.-+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|.+
T Consensus 36 ~~q~~vL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 36 YTGYIVLMAIENDEKLNIKKLGERV------FLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHHHSCTTCEEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHH------CCChhhHHHHHHHHHHCCCeEecC
Confidence 3445566666667788887776543 457899999999999999999864
No 225
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=33.25 E-value=62 Score=23.44 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=28.1
Q ss_pred ecHHHHHHHHH-hcCCCCCCHHHHHHHhCCCHHHHHHHhhHh
Q 006074 494 VSLFQTVVLML-FNDAQKLSFQDIKDATGIEDKELRRTLQSL 534 (662)
Q Consensus 494 vs~~Q~~iLl~-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 534 (662)
+|.-|-.|+.+ |- ..+|.+||++.+|++...+...+..-
T Consensus 16 L~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 16 LTTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35555566644 43 35899999999999998887766544
No 226
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=33.22 E-value=35 Score=26.67 Aligned_cols=50 Identities=8% Similarity=0.177 Sum_probs=37.5
Q ss_pred hhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCc
Q 006074 601 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQI 657 (662)
Q Consensus 601 A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~ 657 (662)
..|..+++... ++..+|-.+ +..+...+.++|..|.+.|+|.+.+..|-.
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~------LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~ 69 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQ------LNMEKREVNKALYDLQRSAMVYSSDDIPPR 69 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHH------SSSCHHHHHHHHHHHHHHTSSEECSSSSCE
T ss_pred HHHHHHHHHcC-CCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEeCCCCCCc
Confidence 34556788555 777665533 356789999999999999999998776643
No 227
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=33.18 E-value=48 Score=27.83 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=33.5
Q ss_pred hhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 600 ~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
+..|...+.....++..+|...+ ..+.+.+-+.+..|.++|||+|.
T Consensus 36 ~~~iL~~l~~~~~~~~~~la~~l------~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 36 QFKVLCSIRCAACITPVELKKVL------SVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHH------CCChHHHHHHHHHHHHCCCEEec
Confidence 44455555555667777766332 45788999999999999999995
No 228
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=33.13 E-value=42 Score=28.58 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=34.5
Q ss_pred hcCCCCC-CHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 505 FNDAQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 505 Fn~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
|..++.+ |..+|++.+|++...++++|..|. ..+++...|
T Consensus 22 l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~--~~Gli~~~~ 62 (129)
T 2ek5_A 22 LSIDQRVPSTNELAAFHRINPATARNGLTLLV--EAGILYKKR 62 (129)
T ss_dssp SCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHH--TTTSEEEET
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEec
Confidence 3445677 999999999999999999999999 888887654
No 229
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=32.86 E-value=39 Score=29.87 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=38.2
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
++-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|.
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERV------ALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEeee
Confidence 344677788888889998887655 45789999999999999999973
No 230
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=32.84 E-value=40 Score=30.29 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=39.7
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
+|-.|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|-
T Consensus 28 ~d~~IL~~L~~~~~~s~~eLA~~l------glS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQNDGKAPLREISKIT------GLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEee
Confidence 555788888888899999988665 46899999999999999999873
No 231
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=32.68 E-value=39 Score=30.35 Aligned_cols=47 Identities=28% Similarity=0.394 Sum_probs=39.3
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
+|-.|.+.+.....++..+|-..+ ..+.+.+.++|..|.++|+|+|-
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~l------glS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQL------KKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEee
Confidence 455688888888889999987665 56899999999999999999873
No 232
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=32.64 E-value=39 Score=29.40 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=38.7
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccc
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 650 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r 650 (662)
++..|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQF------GVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHH------TSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHcCCcce
Confidence 455678888888889999987665 4589999999999999999997
No 233
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=32.56 E-value=38 Score=34.23 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=39.6
Q ss_pred HHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEec
Q 006074 501 VLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 561 (662)
Q Consensus 501 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 561 (662)
|+..+. .+..|++||++.+|+++..+.+.|..|+ ..+++.... .+.|..+.
T Consensus 44 i~~~l~-~~~~t~~ela~~~~~~~~~l~r~L~~L~--~~g~~~~~~-------~g~y~~t~ 94 (360)
T 1tw3_A 44 LVDHIL-AGARTVKALAARTDTRPEALLRLIRHLV--AIGLLEEDA-------PGEFVPTE 94 (360)
T ss_dssp HHHHHH-TTCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE-------TTEEEECT
T ss_pred HHHHHh-CCCCCHHHHHHHhCcCHHHHHHHHHHHH--HCCCEEecC-------CCeEEeCH
Confidence 443443 3579999999999999999999999999 889998632 24566654
No 234
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=31.84 E-value=41 Score=33.52 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEec
Q 006074 502 LMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 561 (662)
Q Consensus 502 Ll~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 561 (662)
+..+.+ +..|++||++.+|+++..+.+.|..|+ ..+++... ++.|..+.
T Consensus 32 ~~~l~~-~~~t~~ela~~~~~~~~~l~r~L~~L~--~~g~l~~~--------~~~y~~t~ 80 (335)
T 2r3s_A 32 FTAISQ-GIESSQSLAQKCQTSERGMRMLCDYLV--IIGFMTKQ--------AEGYRLTS 80 (335)
T ss_dssp HHHHTT-SEECHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE--------TTEEEECH
T ss_pred HHHHhc-CCCCHHHHHHHhCCCchHHHHHHHHHH--hcCCeEec--------CCEEecCH
Confidence 334443 689999999999999999999999999 88899763 35666653
No 235
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.81 E-value=31 Score=30.05 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=42.7
Q ss_pred EEecHHHHHHHHHhcCCCCCCHHHHHHHh-----CCCHHHHHHHhhHhhcCCccceecC
Q 006074 492 LAVSLFQTVVLMLFNDAQKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 492 l~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+.+|.--..||-.+.+.+.+|.+||.+.+ +++...+-++|..|. ..+++.+.
T Consensus 15 ~r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~--e~Glv~~i 71 (145)
T 3eyy_A 15 YRLTPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLE--ELGLVSHA 71 (145)
T ss_dssp CCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred CCcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHH--HCCcEEEE
Confidence 34577777888766655589999998877 789999999999999 89998874
No 236
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=31.81 E-value=33 Score=31.25 Aligned_cols=45 Identities=4% Similarity=0.152 Sum_probs=35.9
Q ss_pred HHHHHHHhcC-CCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccc-eec
Q 006074 498 QTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRV-LQK 544 (662)
Q Consensus 498 Q~~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~i-L~~ 544 (662)
+..||.++.+ ...+|..+|++.+|++...+.+.|..|. ..++ +..
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~--~~G~~I~~ 69 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLR--SLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHH--HHTCCCEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 4457766664 4569999999999999999999999998 5666 443
No 237
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=31.77 E-value=52 Score=32.79 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEe
Q 006074 509 QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFN 560 (662)
Q Consensus 509 ~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N 560 (662)
+..|++||++.+|+++..+.+.|..|+ ..+++.+.. .+.|..+
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~--~~g~l~~~~-------~~~y~~t 82 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLV--AFEIFQGDT-------RDGYANT 82 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET-------TTEEEEC
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHH--hCCceEecC-------CCeEecC
Confidence 589999999999999999999999999 889998642 2466665
No 238
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=31.60 E-value=59 Score=27.35 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=34.6
Q ss_pred hhhhhhhhcCCC--CCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 600 DAAIVRIMKTRK--VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 600 ~A~IVRimK~~k--~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
+..|...+.... .++..+|...+ ..+.+.+-+.|..|.++|||+|.+
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l------~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEF------SIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHH------CCCcchHHHHHHHHHHCCCEEeeC
Confidence 444555555554 67877776543 457889999999999999999853
No 239
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=31.55 E-value=48 Score=28.12 Aligned_cols=47 Identities=6% Similarity=0.116 Sum_probs=34.4
Q ss_pred hhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 600 ~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||.|..
T Consensus 31 ~~~iL~~l~~~~~~t~~~la~~l------~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 31 QYLYLVRVCENPGIIQEKIAELI------KVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCcCcCHHHHHHHH------CCCHhHHHHHHHHHHHCCCEEeec
Confidence 34455555556677777766443 457889999999999999999953
No 240
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=31.14 E-value=62 Score=33.40 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=46.2
Q ss_pred HHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCC-C--CCCCCeEEEecCCC
Q 006074 499 TVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGR-D--VEDDDSFVFNEGFT 564 (662)
Q Consensus 499 ~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~-~--~~~~~~~~~N~~f~ 564 (662)
..||.+...+..+|..||++.||++...+.+.+..|. ..+++...+... + =.+...+.+|.+..
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~--~~g~i~~~~~~~~~~~GR~~~~l~~~~~~~ 85 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEML--EAHLVQELEIKEAGNRGRPAVGLVVETEAW 85 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEC-------------CEEECCTTC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEeecccCCCCCCCCCeEEEEcCCcc
Confidence 4577777778899999999999999999999999999 888887743211 0 01234578887753
No 241
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=30.94 E-value=38 Score=29.94 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=33.0
Q ss_pred hhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 600 ~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|.
T Consensus 47 ~~~iL~~L~~~~~~t~~eLa~~l------~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 47 QFRTLVILSNHGPINLATLATLL------GVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHh------CCCHHHHHHHHHHHHHCCCEEec
Confidence 44455555555566666655433 56788999999999999999994
No 242
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=30.83 E-value=43 Score=29.12 Aligned_cols=48 Identities=10% Similarity=0.264 Sum_probs=35.7
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
-+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l------~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRT------AMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEeeec
Confidence 345566666667788887776543 457889999999999999999954
No 243
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=30.45 E-value=44 Score=27.61 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=34.1
Q ss_pred hcCCCCC-CHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 505 FNDAQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 505 Fn~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+..++.+ |..+|++.+|++...++++|..|. ..+++...+
T Consensus 27 ~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~--~~Gli~~~~ 67 (113)
T 3tqn_A 27 YVEGEMIPSIRKISTEYQINPLTVSKAYQSLL--DDNVIEKRR 67 (113)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEec
Confidence 3445667 999999999999999999999999 888887654
No 244
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=30.44 E-value=47 Score=28.92 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=35.1
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
-+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 53 ~~~~iL~~l~~~~~~t~~ela~~l------~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 53 AKMRALAILSAKDGLPIGTLGIFA------VVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------CCChhHHHHHHHHHHHCCCEEecC
Confidence 344555555556677777765443 467889999999999999999953
No 245
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=30.41 E-value=37 Score=33.01 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 507 DAQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 507 ~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
..+.+|+++|++.|||..+++..+|+.|-
T Consensus 211 ~~~~isi~~is~~T~i~~~DIi~tL~~l~ 239 (284)
T 2ozu_A 211 NDKQISIKKLSKLTGICPQDITSTLHHLR 239 (284)
T ss_dssp -----CHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred CCCcEeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 34689999999999999999999999884
No 246
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.31 E-value=45 Score=28.85 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=35.0
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
-+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|.
T Consensus 45 ~~~~iL~~l~~~~~~t~~ela~~------l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 45 TELYAFLYVALFGPKKMKEIAEF------LSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHH------TTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEee
Confidence 34555555655667777776543 246788999999999999999985
No 247
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=30.28 E-value=38 Score=29.45 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=38.3
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
++-.|.+.+.....++..+|-..+ ..+...+.+++..|.++|+|.|-
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADIL------NTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHT------TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 445677888888889998877543 56789999999999999999863
No 248
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=30.15 E-value=46 Score=28.85 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=38.6
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
.+..|.+.+.....++..+|-..+ ..+.+.+.+++..|.+.|+|+|.
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRA------GLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 455677788777889999887665 45789999999999999999874
No 249
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=29.96 E-value=37 Score=28.57 Aligned_cols=48 Identities=13% Similarity=0.264 Sum_probs=36.4
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
-+..|...+.....++..+|...+ ..+.+.+-+.+..|.++|||+|.+
T Consensus 30 ~~~~iL~~l~~~~~~~~~ela~~l------~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 30 AQVACLLRIHREPGIKQDELATFF------HVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHHSTTCBHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEeec
Confidence 345555666666778887776554 457889999999999999999953
No 250
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=29.92 E-value=48 Score=28.79 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=38.6
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
++-.|.+.+.....++..+|-..+ ..+.+.+.++|..|.+.|+|+|-
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKIT------GLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------CSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 344677778778889999987655 56899999999999999999874
No 251
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=29.55 E-value=48 Score=32.25 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=24.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 510 KLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 510 ~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
.+|+++|++.|||..+++..+|+.|-
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l~ 237 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYLN 237 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 79999999999999999999999874
No 252
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=29.47 E-value=67 Score=31.94 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=35.0
Q ss_pred HHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 501 VLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 501 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
|...+.+ +.+|.+||++.+|+++..+.+.|..|+ ..+++...
T Consensus 30 lf~~l~~-g~~t~~elA~~~~~~~~~l~rlLr~l~--~~gl~~~~ 71 (332)
T 3i53_A 30 VADHIAA-GHRTAAEIASAAGAHADSLDRLLRHLV--AVGLFTRD 71 (332)
T ss_dssp HHHHHHT-TCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred hHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--hCCcEEec
Confidence 3334444 589999999999999999999999999 78899874
No 253
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=29.39 E-value=56 Score=28.36 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=38.0
Q ss_pred hhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC--CCCCceee
Q 006074 602 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK--NNPQIYNY 660 (662)
Q Consensus 602 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~--~~~~~y~Y 660 (662)
.|++.+. ...++..+|...+ ..+...+-++|..|.+.|+|+|.. .|+ ...|
T Consensus 28 ~IL~~L~-~g~~~~~eLa~~l------gis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y 80 (146)
T 2f2e_A 28 LIVRDAF-EGLTRFGEFQKSL------GLAKNILAARLRNLVEHGVMVAVPAESGS-HQEY 80 (146)
T ss_dssp HHHHHHH-TTCCSHHHHHHHH------CCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHh------CCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEE
Confidence 3555554 5678888877554 567899999999999999999964 355 4444
No 254
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=29.30 E-value=34 Score=28.82 Aligned_cols=46 Identities=13% Similarity=0.325 Sum_probs=32.1
Q ss_pred hhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 600 ~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|.
T Consensus 35 ~~~iL~~l~~~~~~~~~ela~~------l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 35 QFGVIQVLAKSGKVSMSKLIEN------MGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHH------CSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHH------HCCChhHHHHHHHHHHHCCCeeec
Confidence 3444555555566676666532 345677889999999999999984
No 255
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=29.29 E-value=49 Score=28.13 Aligned_cols=48 Identities=8% Similarity=0.073 Sum_probs=36.5
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
-+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 32 ~q~~iL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 32 NLFAVLYTLATEGSRTQKHIGEKW------SLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEeecc
Confidence 455566666666678888876443 457889999999999999999954
No 256
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=29.11 E-value=36 Score=28.86 Aligned_cols=40 Identities=15% Similarity=0.359 Sum_probs=34.4
Q ss_pred hcCCCCC-CHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 505 FNDAQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 505 Fn~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
+..++.+ |..+|++.+|++...++++|..|. ..+++...|
T Consensus 29 ~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~--~~Gli~~~~ 69 (126)
T 3by6_A 29 LSANDQLPSVRETALQEKINPNTVAKAYKELE--AQKVIRTIP 69 (126)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEec
Confidence 3445677 999999999999999999999999 888887754
No 257
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=29.08 E-value=51 Score=33.44 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 501 VLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 501 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
|+..+. .+.+|++||++.+|+++..+.+.|..|+ ..+++...
T Consensus 41 i~~~l~-~~~~t~~eLA~~~g~~~~~l~r~Lr~L~--~~Gll~~~ 82 (374)
T 1qzz_A 41 LVDHLL-AGADTLAGLADRTDTHPQALSRLVRHLT--VVGVLEGG 82 (374)
T ss_dssp HHHHHH-TTCCSHHHHHHHHTCCHHHHHHHHHHHH--HTTSEECC
T ss_pred hHHHHh-CCCCCHHHHHHHhCcCHHHHHHHHHHHh--hCCCEEEe
Confidence 444443 3579999999999999999999999999 88999863
No 258
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=28.82 E-value=60 Score=27.44 Aligned_cols=48 Identities=10% Similarity=0.168 Sum_probs=37.0
Q ss_pred hhhhhhhhh-cCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIM-KTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRim-K~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
-+..|...+ .....++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 38 ~~~~iL~~l~~~~~~~t~~~la~~l------~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 38 ARWLVLLHLARHRDSPTQRELAQSV------GVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp THHHHHHHHHHCSSCCBHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHh------CCChhhHHHHHHHHHHCCCeeecC
Confidence 345566666 667788888877543 467889999999999999999964
No 259
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=28.81 E-value=37 Score=29.25 Aligned_cols=48 Identities=8% Similarity=0.156 Sum_probs=34.8
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
-+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||+|.+
T Consensus 42 ~q~~iL~~l~~~~~~~~~eLa~~l------~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 42 SQYLVMLTLWEENPQTLNSIGRHL------DLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHH------TCCHHHHHHHHHHHHHHTSEEC--
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEeeCC
Confidence 445555666556777777766443 567899999999999999999964
No 260
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=28.66 E-value=55 Score=26.55 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=37.8
Q ss_pred hhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC--CCCCceee
Q 006074 601 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK--NNPQIYNY 660 (662)
Q Consensus 601 A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~--~~~~~y~Y 660 (662)
..|.+.+. ...++..+|...+. ..+.+.+-+.+..|.++|+|+|.. .|+....|
T Consensus 17 ~~IL~~L~-~~~~~~~eLa~~l~-----~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y 72 (107)
T 2hzt_A 17 XVILXHLT-HGKKRTSELKRLMP-----NITQKMLTQQLRELEADGVINRIVYNQVPPKVEY 72 (107)
T ss_dssp HHHHHHHT-TCCBCHHHHHHHCT-----TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHhc-----CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 34555554 56788888775431 468899999999999999999853 34443333
No 261
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=28.49 E-value=40 Score=28.65 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=33.9
Q ss_pred hhhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 598 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 598 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
.-+..|...+-....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 37 ~~~~~vL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 37 PPDVHVLKLIDEQRGLNLQDLGRQM------CRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHH------C---CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHh------CCCHHHHHHHHHHHHHCCCEeecc
Confidence 3455566666667788888776544 456778999999999999999964
No 262
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=28.10 E-value=49 Score=26.83 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=37.3
Q ss_pred hhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC--CCCCceee
Q 006074 602 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK--NNPQIYNY 660 (662)
Q Consensus 602 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~--~~~~~y~Y 660 (662)
.|.+.+. .+.++..+|...+ . ..+...+-+.+..|.++|+|+|.. .|+....|
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~l----~-gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y 83 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRAI----P-GISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEY 83 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHHS----T-TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHH-hCCcCHHHHHHHc----c-cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEE
Confidence 4555665 5678888877443 1 268999999999999999999854 34443333
No 263
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=28.08 E-value=38 Score=29.51 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=35.7
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
-+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 51 ~q~~vL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 51 GQFPFLMRLYREDGINQESLSDYL------KIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp TTHHHHHHHHHSCSEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEEec
Confidence 345555666666777777765443 567899999999999999999854
No 264
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=27.29 E-value=85 Score=26.46 Aligned_cols=47 Identities=11% Similarity=0.215 Sum_probs=35.1
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
-+..|...+. .+.++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 38 ~~~~iL~~l~-~~~~~~~ela~~------l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 38 LDFLVLRATS-DGPKTMAYLANR------YFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp HHHHHHHHHT-TSCBCHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHh-cCCcCHHHHHHH------hCCCchhHHHHHHHHHHCCCEEeec
Confidence 3445555666 777777776643 2567889999999999999999853
No 265
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=27.16 E-value=56 Score=32.83 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 510 KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 510 ~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
.+|++||++.+|+++..+.+.|..|+ ..+++.+.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~--~~gll~~~ 89 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALA--ALGLLTKE 89 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHH--HCCCeEec
Confidence 89999999999999999999999999 78899874
No 266
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=27.03 E-value=50 Score=27.81 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=33.5
Q ss_pred cCCCCC-CHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 506 NDAQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 506 n~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
..++.+ |..+|++.+|++...++++|..|. ..+++...|
T Consensus 32 ~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~--~~G~i~~~~ 71 (125)
T 3neu_A 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELE--RAGYIYAKR 71 (125)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET
T ss_pred CCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCeEEEec
Confidence 344567 699999999999999999999999 888988754
No 267
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=26.75 E-value=55 Score=32.55 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=35.2
Q ss_pred HHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCcccee-cC
Q 006074 500 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ-KL 545 (662)
Q Consensus 500 ~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~-~~ 545 (662)
..+......+.+|.+||++.+|++...+++-|..|- +.+++. +.
T Consensus 11 ~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~--~~G~v~iri 55 (315)
T 2w48_A 11 VKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGR--EQGIVTIAI 55 (315)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEEe
Confidence 333333444569999999999999999999999998 888886 54
No 268
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=26.73 E-value=60 Score=27.08 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=38.0
Q ss_pred hhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCcee
Q 006074 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 659 (662)
Q Consensus 600 ~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 659 (662)
...|.+.+...+.++..+|...+ ..+.+.+-+.|..|.+.|+|.+..+++..|.
T Consensus 44 rl~IL~~L~~~~~~s~~eLa~~l------~is~stvs~~L~~L~~~Glv~~~~~gr~~~y 97 (122)
T 1u2w_A 44 RAKITYALCQDEELCVCDIANIL------GVTIANASHHLRTLYKQGVVNFRKEGKLALY 97 (122)
T ss_dssp HHHHHHHHHHSSCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEC----CCEE
T ss_pred HHHHHHHHHHCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEECCEEEE
Confidence 33577777766778888876544 4578899999999999999998766554443
No 269
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=26.73 E-value=63 Score=27.56 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=30.7
Q ss_pred hhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 602 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 602 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
.|...+.....++..+|-.. +..+.+.+-+.|..|.++|||+|.
T Consensus 46 ~iL~~l~~~~~~t~~ela~~------l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNK------MYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHH------HCCCchhHHHHHHHHHHCCCeeec
Confidence 33344444455666555533 356789999999999999999995
No 270
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=26.49 E-value=23 Score=33.81 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=39.8
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 495 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 495 s~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
++....||.++.+ +++|+.+|++.+|++...+.++|..|. +.+++..
T Consensus 11 ~~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le--~aGLV~~ 57 (232)
T 2qlz_A 11 NKVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIME--REGVLQS 57 (232)
T ss_dssp SHHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 3455667766665 679999999999999999999999999 8899876
No 271
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.30 E-value=43 Score=29.13 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=37.6
Q ss_pred hhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCC
Q 006074 603 IVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 653 (662)
Q Consensus 603 IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~ 653 (662)
|.++|...+-++.++|...+.+.. ..++...|=+.|+.|.+.|.|.+-..
T Consensus 24 Il~~l~~~~h~ta~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Glv~~i~~ 73 (145)
T 3eyy_A 24 VLEAVDTLEHATPDDILGEVRKTA-SGINISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp HHHHHHHHSSBCHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHhcCCCCHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHCCcEEEEEe
Confidence 344444434789999998876542 35789999999999999999998643
No 272
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=26.30 E-value=49 Score=28.46 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=32.3
Q ss_pred hhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 601 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 601 A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 50 ~~iL~~l~~~~~~t~~ela~~l------~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 50 YLVMLVLWETDERSVSEIGERL------YLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhCCCcCHHHHHHHh------CCCcccHHHHHHHHHHCCCEeecC
Confidence 3344444445556666655332 467899999999999999999964
No 273
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=26.27 E-value=33 Score=27.12 Aligned_cols=45 Identities=7% Similarity=0.053 Sum_probs=34.0
Q ss_pred hhcCCC-CCChHHHHHHHHHhcCCCCChhh-HHHHHHhhhhhccccccCCCCC
Q 006074 606 IMKTRK-VLSHTLLITELFQQLKFPIKPAD-LKKRIESLIDREYLERDKNNPQ 656 (662)
Q Consensus 606 imK~~k-~l~~~~L~~~v~~~l~F~~~~~~-ik~~Ie~Liereyi~r~~~~~~ 656 (662)
.+.... .++..+|...+ ..+.+. +-+.|..|.++|||++++.|+.
T Consensus 23 ~l~~~~~~~t~~eLa~~l------~is~~t~vs~~l~~Le~~Glv~~~~~drR 69 (95)
T 2pg4_A 23 EFEKKGYEPSLAEIVKAS------GVSEKTFFMGLKDRLIRAGLVKEETLSYR 69 (95)
T ss_dssp HHHHTTCCCCHHHHHHHH------CCCHHHHHTTHHHHHHHTTSEEEEEEETT
T ss_pred HHHhcCCCCCHHHHHHHH------CCCchHHHHHHHHHHHHCCCeecCCCCCC
Confidence 334444 78888877544 457888 9999999999999998776654
No 274
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=26.24 E-value=59 Score=27.70 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=34.9
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
-+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~l------~~~~~tvs~~l~~Le~~Glv~r~~ 88 (148)
T 3nrv_A 41 TEWRIISVLSSASDCSVQKISDIL------GLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
T ss_dssp HHHHHHHHHHHSSSBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEeec
Confidence 344555555566678887776543 457889999999999999999874
No 275
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=26.22 E-value=63 Score=27.63 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=34.4
Q ss_pred hhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 600 ~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l------~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAAL------QMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCeeecC
Confidence 44455555555667766666443 457889999999999999999964
No 276
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=25.71 E-value=71 Score=29.17 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=37.5
Q ss_pred hHhhhhhhhhhhhcCC-CCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCC
Q 006074 595 RQYQVDAAIVRIMKTR-KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQ 656 (662)
Q Consensus 595 r~~~i~A~IVRimK~~-k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~ 656 (662)
|+..|=.+|...++.+ ...+..||-..+ ... ...+.++|..|.++|||.|++..+.
T Consensus 6 ~q~~il~~I~~~~~~~g~~~s~~eia~~l----gl~--~~tv~~~l~~Le~~G~i~~~~~~~r 62 (196)
T 3k2z_A 6 RQRKVLLFIEEFIEKNGYPPSVREIARRF----RIT--PRGALLHLIALEKKGYIERKNGKPR 62 (196)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHH----TSC--HHHHHHHHHHHHHTTSEECC---TT
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHc----CCC--cHHHHHHHHHHHHCCCEEecCCCcc
Confidence 4455666677766665 467877776443 433 4469999999999999999876543
No 277
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=25.70 E-value=55 Score=27.54 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=36.6
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
-+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||.|..
T Consensus 32 ~~~~iL~~l~~~~~~~~~ela~~l------~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQERL------QIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEecC
Confidence 445566666666778888776543 467899999999999999999864
No 278
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=25.55 E-value=39 Score=32.85 Aligned_cols=37 Identities=35% Similarity=0.444 Sum_probs=24.8
Q ss_pred HHHHHHhcC-CCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 499 TVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 499 ~~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
..|+-.+.+ .+.+|+++|++.|||..+++..+|+.|-
T Consensus 196 ~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l~ 233 (278)
T 2pq8_A 196 WVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSLN 233 (278)
T ss_dssp HHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHCC
Confidence 344444433 3589999999999999999999998774
No 279
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=25.38 E-value=41 Score=28.27 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=30.5
Q ss_pred hhhhhhhcCC--CCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 601 AAIVRIMKTR--KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 601 A~IVRimK~~--k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
..|...+..+ ..++..+|... +..+.+.+-+.|..|.++|||+|.
T Consensus 40 ~~vL~~l~~~~~~~~t~~eLa~~------l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 40 FAVLTYISENKEKEYYLKDIINH------LNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHH------SSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHHHhccCCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEec
Confidence 3344444444 55665555432 345688899999999999999994
No 280
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=25.36 E-value=67 Score=33.49 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=46.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC-CCCC--CCCCCeEEEecCC
Q 006074 499 TVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP-KGRD--VEDDDSFVFNEGF 563 (662)
Q Consensus 499 ~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~-~~~~--~~~~~~~~~N~~f 563 (662)
..||.++..+..+|..||++.||++...+.+.+..|. +.+++...+ ...+ =.+...+.+|.+.
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~--~~gli~~~~~~~~s~~GR~~~~l~~~~~~ 107 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKITRELI--DAHLIHETTVQEAISRGRPAVGLQTNNLG 107 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEECHHHHHHHTSCCEEEEECCTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeccccCCCCCCCCCeEEEECCCC
Confidence 3467666666789999999999999999999999999 888887653 1000 0133457777664
No 281
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=25.35 E-value=49 Score=31.43 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=36.9
Q ss_pred HhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCC
Q 006074 504 LFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPK 547 (662)
Q Consensus 504 ~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~ 547 (662)
.+..++.++..+|++.+|++...++++|..|. ..|++...|.
T Consensus 43 ~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~--~~Glv~~~~~ 84 (237)
T 3c7j_A 43 SLPSGTALRQQELATLFGVSRMPVREALRQLE--AQSLLRVETH 84 (237)
T ss_dssp SSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEETT
T ss_pred CCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEeCC
Confidence 45567889999999999999999999999999 8889887653
No 282
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=25.32 E-value=85 Score=24.94 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=38.4
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCce
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 658 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 658 (662)
....|++.+.. +.++..+|...+ ..+.+.+-+.+..|.+.|+|.+..+.+..|
T Consensus 24 ~r~~Il~~L~~-~~~~~~ela~~l------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~ 76 (102)
T 3pqk_A 24 VRLMLVCTLVE-GEFSVGELEQQI------GIGQPTLSQQLGVLRESGIVETRRNIKQIF 76 (102)
T ss_dssp HHHHHHHHHHT-CCBCHHHHHHHH------TCCTTHHHHHHHHHHHTTSEEEECSSSCCE
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 33456677744 668888877554 346678999999999999998876555444
No 283
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.26 E-value=66 Score=27.68 Aligned_cols=65 Identities=20% Similarity=0.178 Sum_probs=49.1
Q ss_pred EEecHHHHHHHHHhcCC-CCCCHHHHHHHh-----CCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEEec
Q 006074 492 LAVSLFQTVVLMLFNDA-QKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 561 (662)
Q Consensus 492 l~vs~~Q~~iLl~Fn~~-~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 561 (662)
+.+|.--.+||..+.+. +.+|.+||.+.+ +++...+-++|..|. ..+++.+...+ .....|.++.
T Consensus 10 ~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~~~~---~g~~~Y~~~~ 80 (139)
T 3mwm_A 10 GRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLA--DAGEVDVLRTA---EGESVYRRCS 80 (139)
T ss_dssp CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HTTSSEEEECT---TSCEEEECCS
T ss_pred CccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH--HCCCEEEEEcC---CCceEEEECC
Confidence 45677778888777654 589999999887 799999999999999 88998774321 1124576665
No 284
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=25.12 E-value=69 Score=27.56 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=28.7
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhH
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQS 533 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~ 533 (662)
+|.-|-.|+..+ ..++|++||++.+|++...++..+.-
T Consensus 110 L~~~~r~v~~~~--~~g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 110 FSKFEKEVLTYL--IRGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 456666666643 35789999999999999988776653
No 285
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=24.75 E-value=40 Score=27.44 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=36.9
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNP 655 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~ 655 (662)
....|.+.+ ..+.++..+|...+ ..+.+.+-+.+..|.+.|+|++..+.+
T Consensus 22 ~r~~IL~~L-~~~~~~~~ela~~l------~is~~tv~~~l~~L~~~gli~~~~~gr 71 (114)
T 2oqg_A 22 TRWEILTEL-GRADQSASSLATRL------PVSRQAIAKHLNALQACGLVESVKVGR 71 (114)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHHS------SSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHH-HcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeeEEecCC
Confidence 344566666 45668877766433 567899999999999999999865444
No 286
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=24.64 E-value=56 Score=28.81 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=32.9
Q ss_pred hhhhhhhhcC-CCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 600 DAAIVRIMKT-RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 600 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
+..|...+.. ...++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l------~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAI------GIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH------CCCHhhHHHHHHHHHHCCCEEeeC
Confidence 4444454444 4556666665433 467899999999999999999965
No 287
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=24.46 E-value=90 Score=25.30 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=38.8
Q ss_pred hhhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCce
Q 006074 598 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 658 (662)
Q Consensus 598 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 658 (662)
.....|++.+.. +.++..+|...+ ..+.+.+-+.|..|.+.|+|++..+++..|
T Consensus 25 ~~r~~IL~~L~~-~~~s~~eLa~~l------gis~stvs~~L~~L~~~GlV~~~~~gr~~~ 78 (108)
T 2kko_A 25 GRRLQILDLLAQ-GERAVEAIATAT------GMNLTTASANLQALKSGGLVEARREGTRQY 78 (108)
T ss_dssp STTHHHHHHHTT-CCEEHHHHHHHH------TCCHHHHHHHHHHHHHHTSEEEEEETTEEE
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 344556666764 677887766443 457889999999999999999876544444
No 288
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.18 E-value=1.2e+02 Score=25.85 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=39.9
Q ss_pred hhhhhhhcC-C-CCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCC
Q 006074 601 AAIVRIMKT-R-KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 653 (662)
Q Consensus 601 A~IVRimK~-~-k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~ 653 (662)
.+|..++.. . +-++.++|...+.+.. -.++...|=+.|+.|.+.|.|.+-..
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAG-EDVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 445555554 3 6799999998887642 24688999999999999999998653
No 289
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=24.04 E-value=16 Score=37.12 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred EEecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074 492 LAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 492 l~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
+.++.-|..||......+.+|..+|++.+|+++..+.+.|..|. +.+++.+.
T Consensus 16 ~~~~~r~~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le--~~Glv~~~ 67 (345)
T 2o0m_A 16 LDVLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLK--QLNLIEPS 67 (345)
T ss_dssp ------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 33556678888888888899999999999999999999999998 88888643
No 290
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=23.60 E-value=38 Score=28.77 Aligned_cols=49 Identities=10% Similarity=0.272 Sum_probs=34.2
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 653 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~ 653 (662)
-+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||+|.++
T Consensus 38 ~~~~iL~~l~~~~~~~~~ela~~l------~~~~~tvs~~l~~L~~~gli~r~~~ 86 (142)
T 2bv6_A 38 PQFLVLTILWDESPVNVKKVVTEL------ALDTGTVSPLLKRMEQVDLIKRERS 86 (142)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHT------TCCTTTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHH------CCChhhHHHHHHHHHHCCCEEeecC
Confidence 344555566556667766665332 4467779999999999999999643
No 291
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=23.50 E-value=42 Score=28.26 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=29.7
Q ss_pred hhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 603 IVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 603 IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 43 iL~~l~~~~~~t~~ela~~------l~~~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 43 ALVRLGETGPCPQNQLGRL------TAMDAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp HHHHHHHHSSBCHHHHHHH------TTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 3333333344555444422 4568899999999999999999953
No 292
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=23.08 E-value=89 Score=20.68 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=23.4
Q ss_pred HHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhH
Q 006074 501 VLMLFNDAQKLSFQDIKDATGIEDKELRRTLQS 533 (662)
Q Consensus 501 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~ 533 (662)
|+.++.+ .+|..+|++.+|++...+.+.+..
T Consensus 14 i~~l~~~--g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 14 ISRLLEK--GHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHT--TCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHc--CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3334443 389999999999999988877653
No 293
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=23.05 E-value=1.1e+02 Score=26.66 Aligned_cols=58 Identities=17% Similarity=0.317 Sum_probs=45.7
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCceeec
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 661 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 661 (662)
-.+.|.+++++++..+.+||.....++ .|.++...|-+-|..| |.++-...+ +.|.|.
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~-G~~VtqaTisRDL~eL---~~vKv~~~~-g~~~Y~ 63 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREA-GFNVTQATVSRDIKEM---QLVKVPMAN-GRYKYS 63 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHT-TCCCCHHHHHHHHHHT---TCEEEECSS-SCEEEE
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHc-CCCcCHHHHHHHHHHc---CCeEEECCC-CCEEEE
Confidence 457788999999999999999877554 8999999999888776 666654433 568885
No 294
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=23.00 E-value=35 Score=26.95 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=34.8
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 651 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~ 651 (662)
.+-.|...+.....++..+|-..+ ..+.+.+-+.|..|.+.|+|++.
T Consensus 17 ~~~~iL~~L~~~~~~~~~ela~~l------~is~~tvs~~l~~L~~~gli~~~ 63 (100)
T 1ub9_A 17 VRLGIMIFLLPRRKAPFSQIQKVL------DLTPGNLDSHIRVLERNGLVKTY 63 (100)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHT------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 344555555555677877776543 56788999999999999999964
No 295
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=23.00 E-value=1e+02 Score=21.86 Aligned_cols=53 Identities=19% Similarity=0.371 Sum_probs=36.3
Q ss_pred hhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCceee
Q 006074 603 IVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 660 (662)
Q Consensus 603 IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 660 (662)
|..+++.++.++.++|...+.+. ...++...|-+-|+ +-|.+ +-..+.+.+.|
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~-~~~vs~~Tv~R~L~---~lg~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQD-GYKVTQATVSRDIK---ELHLV-KVPTNNGSYKY 62 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHT-TCCCCHHHHHHHHH---HHTCE-EEEETTTEEEE
T ss_pred HHHHHHcCCCCCHHHHHHHHHHh-CCCcCHHHHHHHHH---HcCCE-EEecCCCceee
Confidence 33455667889999999887553 45688899999888 55777 44333334555
No 296
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=23.00 E-value=1e+02 Score=29.00 Aligned_cols=38 Identities=8% Similarity=0.070 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 498 QTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 498 Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
...+|.++-++...|.++|+..+|++.+++.+.|..+-
T Consensus 24 ~~~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 24 LVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 34567778888999999999999999999999998884
No 297
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=22.50 E-value=1.1e+02 Score=25.14 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=28.4
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHh
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSL 534 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 534 (662)
+|.-|-.|+.+.- ..++|..||++.+|++...++..+...
T Consensus 26 L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra 65 (113)
T 1xsv_A 26 LTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRT 65 (113)
T ss_dssp SCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3555555664431 235899999999999999888776544
No 298
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=22.38 E-value=71 Score=32.10 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceec
Q 006074 509 QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544 (662)
Q Consensus 509 ~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 544 (662)
+.+|.+||++.+|+++..+.+.|..|+ ..+++.+
T Consensus 54 g~~t~~elA~~~g~~~~~l~rlLr~l~--~~g~l~~ 87 (348)
T 3lst_A 54 GPRTPAELAAATGTDADALRRVLRLLA--VRDVVRE 87 (348)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHH--hCCCEEe
Confidence 479999999999999999999999999 7889986
No 299
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=22.20 E-value=74 Score=30.20 Aligned_cols=51 Identities=24% Similarity=0.215 Sum_probs=45.7
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 494 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 494 vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
.+.-|+.||-+-...+.+|.++++..+|.+....+..|..|. +.+++..+.
T Consensus 152 l~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~--~~GllwvD~ 202 (234)
T 3cuq_A 152 LNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLL--KEGLAWLDL 202 (234)
T ss_dssp CCHHHHHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHH--HHTSCEEES
T ss_pred cchHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHH--hCCCEEEeC
Confidence 678999999777778899999999999999999999999999 888888753
No 300
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=22.18 E-value=1.1e+02 Score=23.85 Aligned_cols=41 Identities=7% Similarity=0.151 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhc
Q 006074 496 LFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLAC 536 (662)
Q Consensus 496 ~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 536 (662)
..+-.+.....-...++++.|++.+++|++++...|..|+.
T Consensus 16 v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~ 56 (84)
T 1ufm_A 16 VIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMIT 56 (84)
T ss_dssp HHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 33444445555678999999999999999999999999985
No 301
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=21.84 E-value=1.2e+02 Score=23.01 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHhhhhccceeeEe-ccCh-hHHHHHHHHHHHHHhcCCCC
Q 006074 308 AELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRF-IQGK-DVFEAFYKKDLAKRLLLGKS 368 (662)
Q Consensus 308 ~e~La~y~d~~lk~~~~~~~~~e~~~~l~~i~~lf~~-l~~K-d~F~~~Y~~~La~RLL~~~s 368 (662)
-+++.+.++..+ + +.+++++...|+.+...+.. +.+. +.|...|...+..-|+.+.+
T Consensus 7 C~~~v~~le~~l-~---n~Te~~I~~~L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~~L~~~~~ 65 (74)
T 1l9l_A 7 CLTIVQKLKKMV-D---KPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGET 65 (74)
T ss_dssp HHHHHHHHHHHC-S---SCCHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHh-c---ccCHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356777788888 5 34788999999999888876 5544 68999999999999988654
No 302
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=21.84 E-value=56 Score=29.36 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHhCCC-HHHHHHHhh-HhhcCCcccee
Q 006074 498 QTVVLMLFNDAQKLSFQDIKDATGIE-DKELRRTLQ-SLACGKVRVLQ 543 (662)
Q Consensus 498 Q~~iLl~Fn~~~~~t~~ei~~~t~i~-~~~l~~~L~-~L~~~k~~iL~ 543 (662)
+++++-+..+...+++++|++.++++ ..++..-+. .-+ ..+++.
T Consensus 97 lLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai--~~gLI~ 142 (169)
T 3chm_A 97 QLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECM--YAGIVR 142 (169)
T ss_dssp HHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHH--HHTSEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHH--HhCCeE
Confidence 44555444457799999999999999 878776665 444 455654
No 303
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=21.63 E-value=42 Score=29.12 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=33.4
Q ss_pred hhhhhhhhh-cCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIM-KTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRim-K~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
-+..|...+ .....++..+|... ...+.+.+-+.|..|.++|||+|..
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~------l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGA------LKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHH------CSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHH------HCCChhhHHHHHHHHHHCCCEEeec
Confidence 345556666 45566666666533 2456777889999999999999964
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.58 E-value=1.1e+02 Score=26.27 Aligned_cols=60 Identities=7% Similarity=0.033 Sum_probs=43.0
Q ss_pred hhhhhhhhcC-CCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCceee
Q 006074 600 DAAIVRIMKT-RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 660 (662)
Q Consensus 600 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 660 (662)
.-+|..++.. .+-++.++|...+.+.. -.++...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 84 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKF-PNMSVATVYNNLRVFRESGLVKELTYGDASSRF 84 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGC-TTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCChhhHHHHHHHHHHCCCEEEEeeCCCceEE
Confidence 3445555544 56799999998876542 246889999999999999999987543333333
No 305
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=21.58 E-value=80 Score=30.93 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=48.1
Q ss_pred HHhhHhhhhhhhhhhhcCCC-CCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhcccccc---CCCCCcee
Q 006074 592 FQDRQYQVDAAIVRIMKTRK-VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD---KNNPQIYN 659 (662)
Q Consensus 592 ~~~r~~~i~A~IVRimK~~k-~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~---~~~~~~y~ 659 (662)
...+-...-+.+.++|+.+. ..+.+||. +...|.+=.-++-.-++.|++|++|++. ..++++|+
T Consensus 216 I~sk~~~~~~~Ll~~m~ek~~~wS~~Ei~----~~p~~~~~~idle~iL~~Lv~k~lI~~~~~~tk~~~~~~ 283 (290)
T 3c18_A 216 LQSKVLSGGKYLFEVMRERDRPWTMHELM----EESRLTELKVDLGSLVDFFIRKGLIRISYQRTKGLGVEL 283 (290)
T ss_dssp HHHTHHHHHHHHHHHHTTSSSCEEHHHHH----HCGGGGGGHHHHHHHHHHHHHTTSEEEEEEECTTSSEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHh----cCcccccccCCHHHHHHHHHHcCCeEEecccCCCCcEEE
Confidence 34555666778899999987 88988877 3334666667788889999999999986 34566654
No 306
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=21.48 E-value=89 Score=26.66 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=39.3
Q ss_pred hhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC--CCCCceee
Q 006074 601 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK--NNPQIYNY 660 (662)
Q Consensus 601 A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~--~~~~~y~Y 660 (662)
..|++.+. .+.+.+.+|...+. ..+...+-+.+..|.+.|+|+|.. +|+....|
T Consensus 29 l~IL~~L~-~g~~rf~eL~~~l~-----gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y 84 (131)
T 4a5n_A 29 GILFYHMI-DGKKRFNEFRRICP-----SITQRMLTLQLRELEADGIVHREVYHQVPPKVEY 84 (131)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHCT-----TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHHh-cCCcCHHHHHHHhc-----ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEE
Confidence 34556665 67889998875542 457899999999999999999963 44444444
No 307
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=21.41 E-value=82 Score=26.06 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=39.0
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCC--CCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKF--PIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F--~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
.+-.|...++.+..++..+|-. .+ ..+.+.+.++|..|.+.|+|++.+
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~------~l~~giS~~aVs~rL~~Le~~GLV~~~~ 63 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELED------RDEIRISKSSVSRRLKKLADHDLLQPLA 63 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHT------STTCCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHHHcCCCCHHHHHH------HHhcCCCHHHHHHHHHHHHHCCCEEecC
Confidence 4566778888878888887663 34 678999999999999999999863
No 308
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=21.25 E-value=1.4e+02 Score=23.70 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=34.3
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCC
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 653 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~ 653 (662)
|-+-|.+.+.. . +...+|...+ ..+...+.+.++.|.++|||++.++
T Consensus 9 Ii~~IL~~i~~-~-~~~t~La~~~------~ls~~~~~~~l~~L~~~GLI~~~~~ 55 (95)
T 1r7j_A 9 IIQAILEACKS-G-SPKTRIMYGA------NLSYALTGRYIKMLMDLEIIRQEGK 55 (95)
T ss_dssp HHHHHHHHHTT-C-BCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHc-C-CCHHHHHHHh------CcCHHHHHHHHHHHHHCCCeEEECC
Confidence 34445555553 2 7777766544 5679999999999999999999853
No 309
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.14 E-value=81 Score=30.21 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=33.0
Q ss_pred EecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 493 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 493 ~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
.+|.-|-.|+.++ .+++|.+||++.+|++...++.++....
T Consensus 197 ~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~ 237 (258)
T 3clo_A 197 ILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNIL 237 (258)
T ss_dssp SSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4677777788776 3679999999999999999888776543
No 310
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=21.12 E-value=1.2e+02 Score=26.64 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=35.8
Q ss_pred HHHHHHHh-cCC-CCCCHHHHHHHhC-CCHHHHHHHhhHhhcCCccceecC
Q 006074 498 QTVVLMLF-NDA-QKLSFQDIKDATG-IEDKELRRTLQSLACGKVRVLQKL 545 (662)
Q Consensus 498 Q~~iLl~F-n~~-~~~t~~ei~~~t~-i~~~~l~~~L~~L~~~k~~iL~~~ 545 (662)
...||..+ ... ...|+++|.+..+ ++...|.++|..|. ..+++...
T Consensus 31 R~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~--eaGLV~~~ 79 (151)
T 3u1d_A 31 RLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELV--DRGIVEKI 79 (151)
T ss_dssp HHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHH--HCCCeEEe
Confidence 34455443 332 3589999999999 99999999999999 88888753
No 311
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=21.00 E-value=74 Score=25.65 Aligned_cols=53 Identities=8% Similarity=0.170 Sum_probs=38.0
Q ss_pred hhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCce
Q 006074 599 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 658 (662)
Q Consensus 599 i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 658 (662)
....|+..+. .+.++..+|...+ ..+.+.+-+.|..|.+.|+|.+..+++..|
T Consensus 27 ~r~~IL~~L~-~~~~~~~ela~~l------~is~stvs~~L~~L~~~Glv~~~~~gr~~~ 79 (106)
T 1r1u_A 27 NRIRIMELLS-VSEASVGHISHQL------NLSQSNVSHQLKLLKSVHLVKAKRQGQSMI 79 (106)
T ss_dssp HHHHHHHHHH-HCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHHHH-hCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 4445666665 5667888876544 457888999999999999999875544333
No 312
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=20.88 E-value=64 Score=27.09 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=34.8
Q ss_pred hhhhhhhhhcCCC--CCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 599 VDAAIVRIMKTRK--VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 599 i~A~IVRimK~~k--~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
-+..|...+-... .++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l------~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKAL------QRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHh------CCCcccHHHHHHHHHHCCCEeecC
Confidence 3445555555543 77777766443 457889999999999999999853
No 313
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=20.87 E-value=2.3e+02 Score=23.48 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=31.1
Q ss_pred HHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCcccee
Q 006074 502 LMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ 543 (662)
Q Consensus 502 Ll~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~ 543 (662)
..+... +.-|+..|.+.||+|...++..|.+|. ..+|-.
T Consensus 26 a~lId~-~~~nvp~L~~~TGmPRRTiQd~I~aL~--elgI~~ 64 (117)
T 3ke2_A 26 AHLMDD-ARHNLLSLGKLTGMPRRTLQDAIASFA--DIGIEV 64 (117)
T ss_dssp HHHHHH-SCCCHHHHHHHHCCCHHHHHHHHHTGG--GGTCEE
T ss_pred HHHHhc-CCCCHHHHHHHHCCCHhHHHHHHHHhh--hCCeEE
Confidence 344444 455999999999999999999999998 766643
No 314
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=20.83 E-value=1.7e+02 Score=24.55 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCcCChHHHHHHHHHHhhhh--ccH
Q 006074 91 VEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG--IYS 131 (662)
Q Consensus 91 ~~~~l~~~ll~~I~~~R~g~~i~~~~ik~~i~ml~~l~--~Y~ 131 (662)
+++++.+.|-+++...|...+-|. -..++..||.+|| ||+
T Consensus 8 vs~~v~~~I~~iVe~r~qeGA~dv-s~SSv~smLlELGLrVY~ 49 (127)
T 3on0_A 8 VNNNVYEQITDLVTIRKQEGIEEA-SLSNVSSMLLELGLRVYM 49 (127)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTC-CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCcccc-cHHHHHHHHHHHhHHHHH
Confidence 346777888888888888766222 3668899999998 665
No 315
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=20.77 E-value=1.1e+02 Score=23.30 Aligned_cols=57 Identities=14% Similarity=0.258 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHhhhhccceeeEeccCh-hHHHHHHHHHHHHHhcCCCC
Q 006074 309 ELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGK-DVFEAFYKKDLAKRLLLGKS 368 (662)
Q Consensus 309 e~La~y~d~~lk~~~~~~~~~e~~~~l~~i~~lf~~l~~K-d~F~~~Y~~~La~RLL~~~s 368 (662)
++++++++..+.++ .+++++.+.++.+-..+..+... +.|...|-..+.+-|..+.+
T Consensus 8 ~~iv~~ve~~l~~~---~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~~~iI~~l~~~~~ 65 (78)
T 1nkl_A 8 RKIIQKLEDMVGPQ---PNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKK 65 (78)
T ss_dssp HHHHHHHHHHHCSS---CCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcC---CcHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 57888889988763 57888999999888777764443 68999999999998887654
No 316
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=20.68 E-value=1e+02 Score=25.37 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=29.0
Q ss_pred ecHHHHHHHHH-hcCCCCCCHHHHHHHhCCCHHHHHHHhhHhh
Q 006074 494 VSLFQTVVLML-FNDAQKLSFQDIKDATGIEDKELRRTLQSLA 535 (662)
Q Consensus 494 vs~~Q~~iLl~-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 535 (662)
+|+-|..|+.+ +-+ ++|..||++.+|++...+...+..-.
T Consensus 23 L~~~~r~vl~l~y~~--g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 23 LTDKQMNYIELYYAD--DYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp SCHHHHHHHHHHHHT--CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45666666644 333 47999999999999998887776543
No 317
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=20.65 E-value=79 Score=26.87 Aligned_cols=40 Identities=15% Similarity=0.422 Sum_probs=35.0
Q ss_pred hcCCCCC-CHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCC
Q 006074 505 FNDAQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 546 (662)
Q Consensus 505 Fn~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 546 (662)
|..++.+ |..+|++.+|++...++++|..|. ..+++...|
T Consensus 32 l~pG~~LPser~La~~~gVSr~tVReAl~~L~--~eGlv~~~~ 72 (134)
T 4ham_A 32 LQEGEKILSIREFASRIGVNPNTVSKAYQELE--RQEVIITVK 72 (134)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET
T ss_pred CCCCCCCccHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEEEc
Confidence 4556678 899999999999999999999999 889988765
No 318
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.63 E-value=1.5e+02 Score=25.23 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=39.8
Q ss_pred hhhhhhhcC-CCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCC
Q 006074 601 AAIVRIMKT-RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 653 (662)
Q Consensus 601 A~IVRimK~-~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~ 653 (662)
-+|..+|.. .+-++.++|...+.+.. -.++...|=+.|+.|.+.|.|.+-..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKG-DAVGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 344555554 46799999998886542 35789999999999999999998643
No 319
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=20.28 E-value=96 Score=25.59 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=36.8
Q ss_pred hhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccCCCCCce
Q 006074 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 658 (662)
Q Consensus 600 ~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 658 (662)
...|++.+. .+.++..+|...+ ..+.+.+-+.+..|.+.|+|.+..+.+..|
T Consensus 23 r~~IL~~L~-~~~~~~~eLa~~l------gis~stvs~~L~~L~~~GlV~~~~~gr~~~ 74 (118)
T 2jsc_A 23 RCRILVALL-DGVCYPGQLAAHL------GLTRSNVSNHLSCLRGCGLVVATYEGRQVR 74 (118)
T ss_dssp HHHHHHHHH-TTCCSTTTHHHHH------SSCHHHHHHHHHHHTTTTSEEEEECSSSEE
T ss_pred HHHHHHHHH-cCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCceEEEEECCEEE
Confidence 345566665 3557777766443 457899999999999999999875544443
No 320
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=20.13 E-value=1.1e+02 Score=27.64 Aligned_cols=47 Identities=4% Similarity=0.091 Sum_probs=33.2
Q ss_pred hhhhhhhhcC--CCCCChHHHHHHHHHhcCCCCChhhHHHHHHhhhhhccccccC
Q 006074 600 DAAIVRIMKT--RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 652 (662)
Q Consensus 600 ~A~IVRimK~--~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Liereyi~r~~ 652 (662)
+..|...+.. ...++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 43 q~~vL~~L~~~~~~~~t~~eLa~~l------~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 43 QYMTILSILHLPEEETTLNNIARKM------GTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEecc
Confidence 3444444443 4567777765443 457889999999999999999953
Done!