BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006075
(662 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91WU4|TMCO4_MOUSE Transmembrane and coiled-coil domain-containing protein 4 OS=Mus
musculus GN=Tmco4 PE=2 SV=2
Length = 631
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 184/294 (62%), Gaps = 12/294 (4%)
Query: 349 VIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGSKMARRIGSVDEFEFKAIGENQNQ 408
+IG++G A+A G+VAG + + FGAAGAGLTG KM +R+G+++EF F + E +
Sbjct: 219 IIGSAG----AAALGSVAGIAVMTSLFGAAGAGLTGYKMKKRVGAIEEFMFLPLTEGR-- 272
Query: 409 GRLAVEILISGVVFD--QEDFVRPWEGQNDNMERYVLQWESKNLIAVSTAIQDWLTSRIA 466
+L + I I+G + F PW + E+Y L WE+K L+ + A++ L S +A
Sbjct: 273 -QLHITIAITGWLGSGRYRTFNAPWMALARSQEQYCLAWEAKYLMELGNALETIL-SGLA 330
Query: 467 MELMKQGAMMTVLKTLLAALAWPATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQ 526
+ ++ TVL ++AAL WPA+L+ A++ID+ W + + RS + GK LA +L+ Q
Sbjct: 331 NMVAQEALKYTVLSGIVAALTWPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQ 390
Query: 527 GYRPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAG 586
G RPVTLIG+SLGARVI+ CL+ +A+ + GI+E VVLLGAP+ ++WE R +V+G
Sbjct: 391 GRRPVTLIGFSLGARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKHWEPFRNVVSG 450
Query: 587 RFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSY 638
R IN Y DW L+ +R S + +AG+QP+ +EN+D+T ++ GH Y
Sbjct: 451 RIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRMENVDLTSVVNGHLDY 504
>sp|Q20035|TMCO4_CAEEL Uncharacterized membrane protein F35D11.3 OS=Caenorhabditis elegans
GN=F35D11.3 PE=3 SV=2
Length = 617
Score = 222 bits (566), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 218/400 (54%), Gaps = 25/400 (6%)
Query: 246 GYDSRHRVALRLLATWLDIKWIKMEAVEMMVASSAMAVRKAEASKEEEATSSESKWAKWK 305
YDSR+RV LR L T L + W + E VE +AS+ + + E+ ++ K K
Sbjct: 157 NYDSRYRVFLRHLTTLLGVVWTEFEDVEDSLASTLLEEQFVESEHSRTVREKTARNKKIK 216
Query: 306 RGGIIGAAALTGGTLMAITGGLAAPAIAAGFSALAPTLGTLIPVIGASGFAAAASAAGTV 365
R +IGAA GG L+ +TGGLAAP +AA L IG A + T
Sbjct: 217 RYLMIGAAGGVGGVLIGLTGGLAAPLVAASAGML----------IGG----GAVAGLATT 262
Query: 366 AGSVAVAASFGAAGAGLTGSKMARRIGSVDEFEFKAIGENQNQGRLAVEILISGVV---- 421
AG+ + + G AGAG TG KM +R+G+++EF + + E + L+ +++SG +
Sbjct: 263 AGAAVLGTTMGVAGAGFTGYKMKKRVGAIEEFSVETLSEGVS---LSCSLVVSGWIESDT 319
Query: 422 FDQEDFVRPWEGQNDNMERYVLQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMMTVLKT 481
+ FV W E+Y L++ES L+ + AI+ +L S ++Q + T L
Sbjct: 320 SPDQAFVHQWRHLRHTKEQYTLRYESNYLMELGNAIE-YLMSFAVSVAIQQTLLETALAG 378
Query: 482 LLAALAWPATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSLGAR 541
L++A+AWP L+ + ++D+ W + V R+ + G+ LAEVL+ G RP+TLIG+SLGAR
Sbjct: 379 LVSAVAWPVALMSVSSVLDNPWNVCVSRAAEVGEQLAEVLLSRSHGKRPITLIGFSLGAR 438
Query: 542 VIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAI 601
VIF CL +++ + GI+E V+LLGAP++ + W V +V+GR IN Y DW L
Sbjct: 439 VIFHCLLTMSKRSESVGIIEDVILLGAPVTASPKEWSKVCTVVSGRVINGYCETDWLLRF 498
Query: 602 AFRASLLSQGLAGIQPI---NGLGIENIDVTHLIEGHSSY 638
+R +AG PI N I N +++H+++GH Y
Sbjct: 499 LYRTMSAQFRIAGTGPIDNRNSKKIYNYNLSHIVKGHMDY 538
>sp|Q5TGY1|TMCO4_HUMAN Transmembrane and coiled-coil domain-containing protein 4 OS=Homo
sapiens GN=TMCO4 PE=2 SV=1
Length = 634
Score = 216 bits (551), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 236/396 (59%), Gaps = 22/396 (5%)
Query: 247 YDSRHRVALRLLATWLDIKWIKMEAVEMMVASSAMAVRKAEASKEEEATSSESKWAKWKR 306
YD+R RV + + + L + +++ +E M S +++ E+ E + + KWKR
Sbjct: 130 YDARARVLVCHMTSLLQVPLEELDVLEEMFLESLKEIKEEESEMAEASRKKKENRRKWKR 189
Query: 307 GGIIGAAALTGGTLMAITGGLAAPAIAAGFSALAPTLGTLIPVIGASGFAAAASAAGTVA 366
+IG A + GGT++ +TGGLAAP +AAG + + +A A+A G+ A
Sbjct: 190 YLLIGLATVGGGTVIGVTGGLAAPLVAAGAATII--------------GSAGAAALGSAA 235
Query: 367 GSVAVAASFGAAGAGLTGSKMARRIGSVDEFEFKAIGENQNQGRLAVEILISGVVFDQE- 425
G + + FGAAGAGLTG KM +R+G+++EF F + E + +L + I ++G + +
Sbjct: 236 GIAIMTSLFGAAGAGLTGYKMKKRVGAIEEFTFLPLTEGR---QLHITIAVTGWLASGKY 292
Query: 426 -DFVRPWEGQNDNMERYVLQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMMTVLKTLLA 484
F PW + E+Y L WE+K L+ + A++ L S +A + ++ TVL ++A
Sbjct: 293 RTFSAPWAALAHSREQYCLAWEAKYLMELGNALETIL-SGLANMVAQEALKYTVLSGIVA 351
Query: 485 ALAWPATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSLGARVIF 544
AL WPA+L+ A++ID+ W + + RS + GK LA +L+ QG RPVTLIG+SLGARVI+
Sbjct: 352 ALTWPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQGRRPVTLIGFSLGARVIY 411
Query: 545 KCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFR 604
CL+ +A+ + GI+E V+LLGAP+ + ++WE RK+V+GR IN Y DW L+ +R
Sbjct: 412 FCLQEMAQEKDCQGIIEDVILLGAPVEGEAKHWEPFRKVVSGRIINGYCRGDWLLSFVYR 471
Query: 605 ASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSY 638
S + +AG+QP+ +EN+D+T ++ GH Y
Sbjct: 472 TSSVQLRVAGLQPVLLQDRRVENVDLTSVVSGHLDY 507
>sp|Q499U8|TMCO4_RAT Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus
norvegicus GN=Tmco4 PE=2 SV=1
Length = 631
Score = 216 bits (550), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 189/309 (61%), Gaps = 12/309 (3%)
Query: 349 VIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGSKMARRIGSVDEFEFKAIGENQNQ 408
+IG++G A+A G+VAG + + FGAAGAGLTG KM +R+G+++EF F + + +
Sbjct: 219 IIGSAG----AAALGSVAGIAVMTSLFGAAGAGLTGYKMKKRVGAIEEFMFLPLTDGK-- 272
Query: 409 GRLAVEILISGVVFD--QEDFVRPWEGQNDNMERYVLQWESKNLIAVSTAIQDWLTSRIA 466
+L + I I+G + F PW + E+Y L WE+K L+ + A++ L S +A
Sbjct: 273 -QLHITIAITGWLGSGRYRTFNAPWMALARSQEQYCLAWEAKYLMELGNALETIL-SGLA 330
Query: 467 MELMKQGAMMTVLKTLLAALAWPATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQ 526
+ ++ TVL ++AAL PA+L+ A++ID+ W + + RS + GK LA +L+ Q
Sbjct: 331 NMVAQEALKYTVLSGIVAALTLPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQ 390
Query: 527 GYRPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAG 586
G RPVTLIG+SLGARVI+ CL+ +A+ + GI+E VVLLGAP+ + WE R +V+G
Sbjct: 391 GRRPVTLIGFSLGARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKYWEPFRNVVSG 450
Query: 587 RFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSYLWASQL 644
R IN Y DW L+ +R S + +AG+QP+ +EN+D++ ++ GH Y +
Sbjct: 451 RIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRMENVDLSSVVNGHLDYAKKMDV 510
Query: 645 ILERLELDT 653
IL+ + + T
Sbjct: 511 ILKAVGIRT 519
>sp|O14244|YELD_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6F6.13c PE=3 SV=1
Length = 778
Score = 189 bits (480), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 139/410 (33%), Positives = 208/410 (50%), Gaps = 24/410 (5%)
Query: 247 YDSRHRVALRLLATWLDIKWIKMEAVEMMVASSAMAVRKAE-----ASKEEEATSSESKW 301
YD R R L + LDI + E + + E ++ E K
Sbjct: 291 YDCRSRSLLMAVGEVLDINEFDVAKFEKHIVETIQIDDTGELEAGSSANTEAVMKLRRKV 350
Query: 302 AKWKRGGIIGAAALTGGTLMAITGGLAAPAIAAGFSALAPTLGTLIPVIGASGF-AAAAS 360
++ K+ ++G A + GG ++ ++ GL AP I+AG A T+G + + SGF A S
Sbjct: 351 SRRKKYILMGLAGIGGGLVIGLSSGLLAPIISAGIGAAFTTVG--LSGVATSGFLAGGGS 408
Query: 361 AAGTVAGSVAVAASFGAAGAGLTGSKMARRIGSVDEFEFKAIGENQNQGRLAVEILISGV 420
AA AG A G G MA R V FEF+ + Q R V + +SG
Sbjct: 409 AALITAGGAISGAHIGTTG-------MAHRKADVKTFEFRPL---HAQRRANVIVTVSGW 458
Query: 421 VFDQEDFVRPWEGQNDNM--ERYVLQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMMTV 478
+ +ED VR D + + Y + WE + ++A + + L + + + ++Q TV
Sbjct: 459 MLSKEDDVRLSFATLDPIVGDIYSVFWEPE-MLASAGQTMNILATEVVTQSLQQVLGSTV 517
Query: 479 LKTLLAALAWPATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSL 538
L +L+ AL WP L LID+ W ++DR+ G+LLA++L G RPVTL+GYSL
Sbjct: 518 LVSLMGALQWPLILTKLGYLIDNPWNNSLDRAKATGQLLADMLCYRSLGVRPVTLVGYSL 577
Query: 539 GARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWT 598
GARVI+ CL L E + I+E V L G P+ K +W +V+GRF+N Y NDW
Sbjct: 578 GARVIYYCLREL-EKKKEFSIIENVYLFGTPVIFKRTSWLKAASVVSGRFVNGYKKNDWI 636
Query: 599 LAIAFRASLLSQG-LAGIQPINGL-GIENIDVTHLIEGHSSYLWASQLIL 646
L FRA+ G +AG++ I+ + GIENIDVT+L+ GH +Y + ++L
Sbjct: 637 LGYLFRATSGGIGRVAGLRQIDCIPGIENIDVTNLVSGHLAYRESMPILL 686
>sp|P43564|YFD4_YEAST Uncharacterized membrane protein YFL034W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YFL034W PE=1
SV=2
Length = 1073
Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 138/464 (29%), Positives = 232/464 (50%), Gaps = 47/464 (10%)
Query: 199 GSKFDERPIEEEAVLSYQRKVTVLYELLSACLADIPQHDKKCTRQRTGYDSRHRVALRLL 258
G D ++ + L+ T++ +L CL Q + YDSR R L
Sbjct: 443 GKVLDPENVKSQDKLNIDVAWTIICDLFLICL------------QSSTYDSRSRTLLINF 490
Query: 259 ATWLDIKWIKMEAVEMMVASSAMAVRKAEAS--KEEEATSSESKWAKWKRGGIIGAAALT 316
A L++ +++ E V S + E E++ + + + K+ + A +
Sbjct: 491 AKVLNMTSLEICEFERRVTDSLDMEQSTEDQVWDEQDHMRNRRRSKRRKKMAYVALAMVG 550
Query: 317 GGTLMAITGGLAAPAIAAGFSALAPTLGTLIPVIGASGFAAAASAAGTVAGSVAVAASFG 376
G ++ ++GGL AP I G +A T+G + GA+ F V G+ VA S
Sbjct: 551 GSLVLGLSGGLLAPVIGGGIAAGLSTIG----ITGATSFLTG------VGGTTVVAVSST 600
Query: 377 AAGAGLTGSKMARRIGSVDEFEFKAIGENQNQGRLAVEILISGVVFDQEDFVR------- 429
A GA + M++R+GSV FEF+ + N+ R+ + + +SG + ED VR
Sbjct: 601 AIGANIGARGMSKRMGSVRTFEFRPLHNNR---RVNLILTVSGWMVGNEDDVRLPFSTVD 657
Query: 430 PWEGQNDNMERYVLQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMMTVLKTLLAALAWP 489
P EG + Y L WE + L ++ + + + I ++Q TVL L++++ WP
Sbjct: 658 PVEG-----DLYSLYWEPEMLKSIGQTVS-IVATEIFTTSLQQILGATVLTALISSIQWP 711
Query: 490 ATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSLGARVIFKCLEN 549
L ++D+ W +++DR+ AGK+LA+ L+ G RP+TL+G+S+GARVIF CL
Sbjct: 712 MALSKLGYILDNPWNVSLDRAWSAGKILADTLIARNLGARPITLVGFSIGARVIFSCLIE 771
Query: 550 LAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLS 609
L + + G++E V L G P +K + R +V+GRF+N Y+ DW LA FRA+ +
Sbjct: 772 LCKKKA-LGLIENVYLFGTPAVMKKEQLVMARSVVSGRFVNGYSDKDWFLAYLFRAA--A 828
Query: 610 QGLAGIQPINGL----GIENIDVTHLIEGHSSYLWASQLILERL 649
G + + I+ + GIENI+ T ++GH +Y + +L+R+
Sbjct: 829 GGFSAVMGISTIENVEGIENINCTEFVDGHLNYRKSMPKLLKRI 872
>sp|Q9US10|YK68_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC607.08c PE=3 SV=1
Length = 579
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 178/339 (52%), Gaps = 23/339 (6%)
Query: 324 TGGLAAPAIAAGFSALAPTLGTLIPVIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLT 383
TGGLAAP +AAG LGTL +G A + + + A FG GA ++
Sbjct: 189 TGGLAAPFVAAG-------LGTLFAGLGLGTMIGATYLGTLITSAPMITALFGGFGAKMS 241
Query: 384 GSKMARRIGSVDEFEFKAIGENQNQGRLAVEILISGVVFDQEDFVRPWE----GQNDNM- 438
+M + +FEF + Q L V I ISG + D + W+ G
Sbjct: 242 MQQMGDVSKGLTDFEFIPLSV---QSHLPVTIGISGWLGDYNEVDAAWKSLTVGDKSYYW 298
Query: 439 -ERYVLQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMMTVLKTLLAALAWPATLVFAAD 497
+ Y L++E + L+ + ++ L S + + T+L L AAL WP +L+ +
Sbjct: 299 GDIYALKFEVEALVDLGKSLSRILFSAGLGWVKGEVISRTILAPLAAAL-WPLSLLKVGN 357
Query: 498 LIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSLGARVIFKCLENLAE-NECN 556
++ + W IA + S KAG+ LA L QG RPVTLIG+SLGAR I +CL +LA+ E N
Sbjct: 358 ILGNSWRIAFNLSIKAGEALANALCVRAQGMRPVTLIGFSLGARTILECLLHLADRGETN 417
Query: 557 AGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQ 616
+VE V+++GAP+ + W +R +VAGRF+N Y+ +D+ L + +R + AG+
Sbjct: 418 --LVENVIVMGAPMPTDAKLWLKMRCVVAGRFVNVYSASDYVLQLVYRVNSAQSTAAGLG 475
Query: 617 PI--NGLGIENIDVTHLIEGHSSYLW-ASQLILERLELD 652
P+ + +EN+DV L+EGH Y W ++++ ERL D
Sbjct: 476 PVSLDSNTLENVDVGDLVEGHLQYRWLVAKILKERLGYD 514
>sp|A6BLY7|K1C28_MOUSE Keratin, type I cytoskeletal 28 OS=Mus musculus GN=Krt28 PE=1 SV=1
Length = 462
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 23/117 (19%)
Query: 344 GTLIPVIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGSKMARRIGSVDEFEF---- 399
G+L P G +GFA ++ A G+VAGS A G G+ GS +G+V F
Sbjct: 17 GSLRPPSGGAGFAGSSVAGGSVAGSGFSWALGGTLGSAPGGSHATGALGNVSGVCFIGSE 76
Query: 400 --------KAIGENQNQGRLAVEILISGVVFDQEDFVRPWEGQNDNMERYVLQWESK 448
K +N N RLA + D V+ E N +ER + W K
Sbjct: 77 GGLLSGNEKVTMQNLNN-RLASYL----------DNVKALEEANSELERKIKTWHEK 122
>sp|Q864S8|BRCA2_FELCA Breast cancer type 2 susceptibility protein homolog OS=Felis catus
GN=BRCA2 PE=2 SV=2
Length = 3372
Score = 33.5 bits (75), Expect = 6.3, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 142 ETSKSKKEKHREYENECREKCSTGKKQSHSDLENADRKTQQETDSNLAGTEDSPHESGSK 201
+TSK++K E +EC+E K+ HS + + DSN+ T P +GS
Sbjct: 315 KTSKTRKNIFNETTDECKEAKKQMKENKHSFVSEMEANASDPLDSNV--TNQKPFGNGSD 372
Query: 202 FDERPIEEEAVLS 214
I +E VLS
Sbjct: 373 ----KISKEVVLS 381
>sp|Q9NJ15|PCSK5_BRACL Proprotein convertase subtilisin/kexin type 5 OS=Branchiostoma
californiense GN=PC6 PE=2 SV=1
Length = 1696
Score = 33.1 bits (74), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 108 LSEEAGDGSAQSSDQEFALSKAVDATAVSLEADSETSKSKKEKHREYENECREKCSTGKK 167
SEE G G + ++ L + D + AD TS ++ + +EN C +CS G+
Sbjct: 711 CSEECGQGYYKDEEERKCLDCSADCLTCQVSADHCTSCDDEDGLKLFENTCVAQCSEGRY 770
Query: 168 QSHSDL 173
+D+
Sbjct: 771 MDENDV 776
>sp|C8UFK8|TIR_ECO1A Translocated intimin receptor Tir OS=Escherichia coli O111:H-
(strain 11128 / EHEC) GN=tir PE=3 SV=1
Length = 551
Score = 32.7 bits (73), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 25 QAQNNQTRPLGLPSE---DDSNMERSSSSSSSDSVAEDPKLWV 64
QA+N TR +G+ S DDS + + +SS++ SV DPK WV
Sbjct: 194 QARNVDTRSVGVGSASGMDDSVVSETRTSSTASSVRSDPKFWV 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 231,234,105
Number of Sequences: 539616
Number of extensions: 9492524
Number of successful extensions: 43424
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 243
Number of HSP's that attempted gapping in prelim test: 42315
Number of HSP's gapped (non-prelim): 1084
length of query: 662
length of database: 191,569,459
effective HSP length: 124
effective length of query: 538
effective length of database: 124,657,075
effective search space: 67065506350
effective search space used: 67065506350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)