BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006076
         (662 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/664 (79%), Positives = 579/664 (87%), Gaps = 16/664 (2%)

Query: 1   MWALQSPQTPQLLRSPYHTNSIAHLPPKPS--SVCCCVSLNSSTTPTSLSSRNKNELIQS 58
           MWA QSP+T  L        S A   P+PS     C ++LN    PT+ S+ + N+LIQS
Sbjct: 1   MWAFQSPKTTLL-------PSNATFLPRPSLKPPICSITLN----PTA-STADNNKLIQS 48

Query: 59  LCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV 118
           LCKQGNL QAL++LS+EPNP QHTYELL+LSCTH NSL DA  VH HL +NGFDQDPFL 
Sbjct: 49  LCKQGNLTQALELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLA 108

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           TKLIN+YS FDS+D+AR VFDKTR RTIYV+NALFRAL+LAG GEEVL +YRRMN  G  
Sbjct: 109 TKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIG-- 166

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           I SDRFTYTYVLKACVAS C  SLL  G+EIHA +LRHGY+G VHIMTTL+DMYA+FGCV
Sbjct: 167 IPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCV 226

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
             A  VF+QM VKNVVSWSAMIACYA+NG AFEALELFRE+++E+ DLCPNSVTMVSVLQ
Sbjct: 227 SNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQ 286

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           ACAALAALEQG++IHGYILR+GLDSILPV+SALVTMYARCGKLELGQ VFD MDKRDVVS
Sbjct: 287 ACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVS 346

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           WNSLISSYGVHG+G KAI IF+EM Y+GV PSPISFVSVLGACSHAGLV+EGKMLF SM 
Sbjct: 347 WNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMH 406

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
             H I PSVEHYACMVDLLGRAN+LEEAAKIIE++RIEPGPKVWGSLLGSCRIHCNVELA
Sbjct: 407 VAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELA 466

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRK 538
           ERAS RLF+LEPTNAGNYVLLAD+YA A MWD VKRVK+LLEARGLQKVPGRS IEVKRK
Sbjct: 467 ERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRK 526

Query: 539 MYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKL 598
           +YSFVSVDE +P+ EQLHALL+ LS E+KE+GYVPQTKVVLYDL A EKERIVLGHSEKL
Sbjct: 527 IYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKL 586

Query: 599 AVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSC 658
           AVAFGLIN+SKGE IRITK+LRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR+GVCSC
Sbjct: 587 AVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSC 646

Query: 659 GDYW 662
           GDYW
Sbjct: 647 GDYW 650


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/665 (77%), Positives = 572/665 (86%), Gaps = 10/665 (1%)

Query: 1   MWALQSPQTPQL--LRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSL-SSRNKNELIQ 57
           MWA Q+PQT Q   L  P+H  +   + PKP    CC++L  STT  S   S N N LIQ
Sbjct: 1   MWAFQTPQTIQQPHLPKPFHKPTA--ISPKPQ---CCLALRPSTTTRSNGDSNNNNPLIQ 55

Query: 58  SLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL 117
           SLCKQGNL QAL VLS EPNPTQHTYELL+LSCT  NSL   +++H HL  +G DQDPFL
Sbjct: 56  SLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFL 115

Query: 118 VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177
            TKLIN+YS  DS+D+AR VFDKTR+RTIYVWNALFRALTLAG G EVL+LYRRMN  G 
Sbjct: 116 ATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIG- 174

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
            + SDRFTYTYVLKACVAS    SLL +G+EIH  +LRHG+ G VHIMTTL+DMYARFGC
Sbjct: 175 -VPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGC 233

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           V+ A  VF QM VKNVVSWSAMIACY++NG   EALELFR+M++E+ DL PNSVTMVSVL
Sbjct: 234 VLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVL 293

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           QACAALAALEQGK++HGYILRRGLDSILPVVSALVT+YARCG LELG  VF+ M+KRDVV
Sbjct: 294 QACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVV 353

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           SWNSLISSYG+HG+G KAIQIFKEMI  G+SPSPISFVSVLGACSHAGLVEEGK+LFESM
Sbjct: 354 SWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESM 413

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
            + H I PSVEHYACMVDLLGRAN+L+EAAKII+D+RIEPGPKVWGSLLGSCRIHCNVEL
Sbjct: 414 VRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVEL 473

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
           AERA+ RLFELEPTNAGNYVLLAD+YA A MW+EVKRVK LLEARGLQKVPGRS IE++R
Sbjct: 474 AERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRR 533

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
           K+YSF+SVDEF+PQ EQLHALL+ LS EMKEKGYVP TKVVLYDLD EEKERIVLGHSEK
Sbjct: 534 KIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLGHSEK 593

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AFGLIN+ KGETIRITKNLRLCEDCHS TKFISKFAN+EILVRDVNRFH F++GVCS
Sbjct: 594 LALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQDGVCS 653

Query: 658 CGDYW 662
           CGDYW
Sbjct: 654 CGDYW 658


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score = 1031 bits (2665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/664 (75%), Positives = 565/664 (85%), Gaps = 17/664 (2%)

Query: 1   MWALQSPQTPQLLRSPYHTNSIAHLPPK-PSSVCCCVSLNS-STTPTSLSSRNKNELIQS 58
           MWAL         R+PY T    H PP  P      +S++S S  P++  + N N LIQS
Sbjct: 1   MWAL---------RTPYST----HYPPSSPRYSTSKLSVSSFSFNPSTPPNSNNNHLIQS 47

Query: 59  LCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV 118
           LCKQGNL+QAL +LS E NPTQ T ELL+LS    NSLSDAL+VH  L D GFDQDPFL 
Sbjct: 48  LCKQGNLKQALYLLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLA 107

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           TKLIN++S  D+VD+AR VFDKTR+RTIYVWNALFRAL LAGRG +VLELY RMN  G  
Sbjct: 108 TKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMG-- 165

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           + SDRFTYTY+LKACVAS C  S L+ GKEIHA +LRHGY   VH+MTTL+DMYARFGCV
Sbjct: 166 VSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCV 225

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
            YA  VF +M VKNVVSWSAMIACYA+NG  +EALELFREM++ +HD  PNSVTMVSVLQ
Sbjct: 226 SYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQ 285

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           ACAA AALEQGK+IH YILRRGLDSILPV+SAL+TMYARCGKLE GQ +FD M K+DVV 
Sbjct: 286 ACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVL 345

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           WNSLISSYG+HGYG KAI+IF+EMI HG SPS ISF+SVLGACSH GLVEEGK LFESM 
Sbjct: 346 WNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMV 405

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
           KEH I+PSVEHYACMVDLLGRAN+L+EAAKIIEDLRIEPGPKVWGSLLG+CRIHC+VELA
Sbjct: 406 KEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELA 465

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRK 538
           ERASKRLF+LEPTNAGNYVLLAD+YA A+MWDEVKRVK+LL++R LQKVPGRS IEV+RK
Sbjct: 466 ERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRK 525

Query: 539 MYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKL 598
           +YSF SVDEF+PQ EQLHALL+NLS EMK++GY PQTK+VLYDLD EEKERIVLGHSEKL
Sbjct: 526 IYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKL 585

Query: 599 AVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSC 658
           AVAFGLINTSKG+TIRITKNLRLCEDCHS TKFISKFA++EI+VRD+NRFHHF++GVCSC
Sbjct: 586 AVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSC 645

Query: 659 GDYW 662
           GDYW
Sbjct: 646 GDYW 649


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  994 bits (2570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/655 (73%), Positives = 551/655 (84%), Gaps = 6/655 (0%)

Query: 10  PQLLRSPYHT-NSIAHLPPKPSSVCCCVSLNSSTTPTSLSSR-NKNELIQSLCKQGNLRQ 67
           PQ+++  YHT N +   P KP S  C V+LN+ +  +   ++ + N+LIQSLCK+G L+Q
Sbjct: 7   PQVIQPTYHTVNFLPRSPLKPPS--CSVALNNPSISSGAGAKISNNQLIQSLCKEGKLKQ 64

Query: 68  ALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH 127
           A+ VLS E +P+Q TYELL+L C H +SLSDAL VH H+ DNG DQDPFL TKLI +YS 
Sbjct: 65  AIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSD 124

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
             SVD AR VFDKTR+RTIYVWNALFRALTLAG GEEVL LY +MN  G  + SDRFTYT
Sbjct: 125 LGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG--VESDRFTYT 182

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
           YVLKACVAS C  + L  GKEIHA + R GY+  V+IMTTL+DMYARFGCV YA +VF  
Sbjct: 183 YVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGG 242

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M V+NVVSWSAMIACYA+NG AFEAL  FREM+ E+ D  PNSVTMVSVLQACA+LAALE
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
           QGK+IHGYILRRGLDSILPV+SALVTMY RCGKLE+GQ VFD M  RDVVSWNSLISSYG
Sbjct: 303 QGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYG 362

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           VHGYG KAIQIF+EM+ +G SP+P++FVSVLGACSH GLVEEGK LFE+M ++H I+P +
Sbjct: 363 VHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQI 422

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           EHYACMVDLLGRAN+L+EAAK+++D+R EPGPKVWGSLLGSCRIH NVELAERAS+RLF 
Sbjct: 423 EHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFA 482

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           LEP NAGNYVLLAD+YA A MWDEVKRVK+LLE RGLQK+PGR  +EV+RKMYSFVSVDE
Sbjct: 483 LEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDE 542

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
           F+P  EQ+HA L+ L+ +MKEKGY+PQTK VLY+L+ EEKERIVLGHSEKLA+AFGLINT
Sbjct: 543 FNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINT 602

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           SKGE IRITKNLRLCEDCH FTKFISKF  KEILVRDVNRFH F+NGVCSCGDYW
Sbjct: 603 SKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  987 bits (2551), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/655 (72%), Positives = 549/655 (83%), Gaps = 6/655 (0%)

Query: 10  PQLLRSPYHT-NSIAHLPPKPSSVCCCVSLNSSTTPTSLSSR-NKNELIQSLCKQGNLRQ 67
           PQ+++  Y+T N +   P KP    C V+LN+ +  +   ++ + N+LIQSLCK+G L+Q
Sbjct: 7   PQVIQPNYYTVNFLPRSPLKPP--LCSVALNNLSISSGAGAKISNNQLIQSLCKEGKLKQ 64

Query: 68  ALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH 127
           AL VLS E +P+Q TYELL+L C H +SLSD L VH H+ DNG DQDPFL TKLI +YS 
Sbjct: 65  ALRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSD 124

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
             SVD AR VFDKTR+RTIYVWNALFRALTLAG GEEVL LY +MN  G  + SDRFTYT
Sbjct: 125 LGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG--VESDRFTYT 182

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
           YVLKACVAS C    L  GKEIHA + R GYN  V+IMTTL+DMYARFGCV YA +VF+ 
Sbjct: 183 YVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNG 242

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M V+NVVSWSAMIACYA+NG AFEAL  FREM+ E+ D  PNSVTMVSVLQACA+LAALE
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALE 302

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
           QG++IHGYILRRGLDSILPV+SALVTMY RCGKL++GQ VFD M  RDVVSWNSLISSYG
Sbjct: 303 QGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYG 362

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           VHGYG KAIQIF+EM+ +G SP+P++FVSVLGACSH GLVEEGK LFESM ++H I+P V
Sbjct: 363 VHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQV 422

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           EHYACMVDLLGRAN+L+EAAK+++D+R EPGPKVWGSLLGSCRIH NVELAERAS+RLF 
Sbjct: 423 EHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFA 482

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           LEP NAGNYVLLAD+YA A MWDEVKRVK+LLE RGLQK+PGR  +EV+RKMYSFVS+DE
Sbjct: 483 LEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDE 542

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
           F+P  EQ+HA L+ L+ +MKEKGY+PQTK VLY+L+ EEKERIVLGHSEKLA+AFGLINT
Sbjct: 543 FNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINT 602

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           SKGE IRITKNLRLCEDCH FTKFISKF  KEILVRDVNRFH F+NGVCSCGDYW
Sbjct: 603 SKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/663 (69%), Positives = 532/663 (80%), Gaps = 6/663 (0%)

Query: 1   MWALQSPQTPQLLRSPYHTNSIAHLPPK-PSSVCCCVSLNSSTTPTSLSSRNKNELIQSL 59
           MW LQ PQ  +   S  H    +H+  + P S    VSLN S    +    N N+LIQSL
Sbjct: 1   MWVLQIPQIVRHAPSQSHLCYNSHVSSRVPVSF---VSLNPSANLMNDIKGNNNQLIQSL 57

Query: 60  CKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
           CK GNL+QA+ +L  EPNPTQ T+E L+ SC   NSLSD L+VH  L  +GFDQDPFL T
Sbjct: 58  CKGGNLKQAIHLLCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLAT 117

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
           KLIN+Y    S+D AR VFD+TR RTIYVWNALFRAL + G G+E+L+LY +MN  G  I
Sbjct: 118 KLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIG--I 175

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
            SDRFTYT+VLKACV S    S L+ GKEIHA +LRHGY   +H+MTTL+D+YA+FG V 
Sbjct: 176 PSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVS 235

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
           YA  VF  M  KN VSWSAMIAC+A+N M  +ALELF+ M++E+HD  PNSVTMV+VLQA
Sbjct: 236 YANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQA 295

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           CA LAALEQGK+IHGYILRRGLDSILPV++AL+TMY RCG++ +GQ VFD+M  RDVVSW
Sbjct: 296 CAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSW 355

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           NSLIS YG+HG+G KAIQIF+ MI+ G SPS ISF++VLGACSHAGLVEEGK+LFESM  
Sbjct: 356 NSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLS 415

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
           ++ I P +EHYACMVDLLGRAN+L+EA K+IED+  EPGP VWGSLLGSCRIHCNVELAE
Sbjct: 416 KYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAE 475

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKM 539
           RAS  LFELEP NAGNYVLLAD+YA A MW E K V +LLEARGLQK+PG S IEVKRK+
Sbjct: 476 RASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKV 535

Query: 540 YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA 599
           YSFVSVDE +PQ E++HALL+ LS EMK +GYVPQT VVLYDLD EEKERIVLGHSEKLA
Sbjct: 536 YSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLA 595

Query: 600 VAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           VAFGLINT KGETIRI KNLRLCEDCH+ TKFISKFAN+EILVRDVNRFHHF++GVCSCG
Sbjct: 596 VAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCG 655

Query: 660 DYW 662
           DYW
Sbjct: 656 DYW 658


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/663 (69%), Positives = 531/663 (80%), Gaps = 6/663 (0%)

Query: 1   MWALQSPQTPQLLRSPYHTNSIAHLPPK-PSSVCCCVSLNSSTTPTSLSSRNKNELIQSL 59
           MW LQ PQ  + + S  H    +H+  + P S    VSLN S    +  + N N+LIQSL
Sbjct: 1   MWVLQIPQFVRHVPSQSHLCYTSHVSSRVPVSF---VSLNPSANLINDINSNNNQLIQSL 57

Query: 60  CKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
           CK GNL+QAL +L  EPNPTQ T+E L+ SC   NSLS  L+VH  L D+GFDQDPFL T
Sbjct: 58  CKGGNLKQALHLLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLAT 117

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
           KLIN+Y    S+D A  VFD+TR RTIYVWNALFRAL + G G+E+L+LY +MN  GT  
Sbjct: 118 KLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTP- 176

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
            SDRFTYTYVLKACV S      L+ GKEIHA +LRHGY   +H+MTTL+D+YA+FG V 
Sbjct: 177 -SDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVS 235

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
           YA  VF  M  KN VSWSAMIAC+A+N M  +ALELF+ M+ E+ +  PNSVTMV++LQA
Sbjct: 236 YANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQA 295

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           CA LAALEQGK+IHGYILRR LDSILPV++AL+TMY RCG++ +GQ VFD+M KRDVVSW
Sbjct: 296 CAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSW 355

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           NSLIS YG+HG+G KAIQIF+ MI+ GVSPS ISF++VLGACSHAGLVEEGK+LFESM  
Sbjct: 356 NSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLS 415

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
           ++ I P +EHYACMVDLLGRAN+L EA K+IED+  EPGP VWGSLLGSCRIHCNVELAE
Sbjct: 416 KYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAE 475

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKM 539
           RAS  LFELEP NAGNYVLLAD+YA A +W E K V +LLEARGLQK+PG S IEVKRK+
Sbjct: 476 RASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKV 535

Query: 540 YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA 599
           YSFVSVDE +PQ E++HALL+ LS EMK +GYVPQT VVLYDLD EEKERIVLGHSEKLA
Sbjct: 536 YSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLA 595

Query: 600 VAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           VAFGLINT+KGETIRI KNLRLCEDCH+ TKFISKFAN+EILVRDVNRFHHFR+GVCSCG
Sbjct: 596 VAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCG 655

Query: 660 DYW 662
           DYW
Sbjct: 656 DYW 658


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/657 (64%), Positives = 520/657 (79%), Gaps = 9/657 (1%)

Query: 8   QTPQLLR-SPYHTNSIAHLPPKPSSVCCCVSLNSSTTPT-SLSSRNKNELIQSLCKQGNL 65
           Q PQL+R  P+      + P + SS    VSLN+S  PT  + S N ++LIQSLC+ GNL
Sbjct: 5   QLPQLVRHGPFQ-----NYPCRYSSHVSFVSLNASGYPTKDIKSNNNDDLIQSLCRGGNL 59

Query: 66  RQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY 125
           +QA+ +L  EPNPT+ T+ELL+ SC   NSLSD ++VH  L  +G DQDP+L TKLIN+Y
Sbjct: 60  KQAVQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMY 119

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
               SVD A  VFD+TR +TI+VWNA+FRAL +A RGE++L LY +MN  G  I S+RFT
Sbjct: 120 CDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIG--IPSNRFT 177

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
           YTYVLKACV S      L+ GKEIHA +LRHGY G VH+MTTL+D+YARFG V YA  VF
Sbjct: 178 YTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVF 237

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
             M  KN+VSWSAMIACYA+N M  +ALELF+ M++E+ D  PN +TMVSVLQACA+LAA
Sbjct: 238 GAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAA 297

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           LE GK++H Y+LRRGLDS LPV++ L+TMY RCG++  GQ VFD+M KRDV+SWNSLIS 
Sbjct: 298 LEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISI 357

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           YG+HG G KAIQIF+ MI  GVSPS I+F++VL ACSHAGLVEE K+LFESM  ++ I P
Sbjct: 358 YGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHP 417

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
            +EHYACMVD+LGRAN+L+EA ++I+++  +PGP VWGSLLGSCRIHCNVELAERAS  L
Sbjct: 418 RMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAML 477

Query: 486 FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSV 545
           FELEP NAGNYVLL+ +YA + MW++V+RV++ LE+RGLQK+P  S IEVKRK+YS VS+
Sbjct: 478 FELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSI 537

Query: 546 DEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLI 605
           +E++PQ E+L A LI L  E+K +GYVPQT VV YDLD EEKERIVLGHS KLAVAFGLI
Sbjct: 538 EEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLI 597

Query: 606 NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NTSKGE IRI+ NLRLCEDCH+F KF+SKF N+EIL+RDVNRFH F++GVCSCGDYW
Sbjct: 598 NTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/659 (54%), Positives = 461/659 (69%), Gaps = 18/659 (2%)

Query: 15  SPYHTNSIAHLPPKP--------SSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLR 66
           SP+   SI HLP +P        S + C  SL  +++  S +  N + LIQ LC  G L 
Sbjct: 179 SPH--TSILHLPHRPFVFRRPRLSRLRCFASLAPASSGASPA--NDDHLIQMLCAHGRLA 234

Query: 67  QALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL-TDNGFDQDPFLVTKLINVY 125
           QA  +L   P PTQ TYE LLL+       + A  VH  L  D  F  DPFL T+LI  Y
Sbjct: 235 QATALLQGLPAPTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAY 294

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
           +   ++  AR VFD+   + I+VWNA+ +AL LA  GEE L     M   G  +  D ++
Sbjct: 295 AALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPV--DSYS 352

Query: 186 YTYVLKACVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           Y + LKAC+A+S          +E+HA  +R GY    H+ TTLID YA+ G V YA  V
Sbjct: 353 YAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERV 412

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F+ M  +N+VSWSAMI CYA+N    +A+++F+EM+    DL PNS+T+VSVL ACA + 
Sbjct: 413 FTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVN 472

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR-DVVSWNSLI 363
           AL QGK++H YILRRG D ++ V++AL+ MY +CG LE G+ +F+ + +R +VVSWNSLI
Sbjct: 473 ALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLI 532

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           S YG+HG+G +++Q+F+EMI  G+SP+ I+FVSVLGACSH GLVE+GK LFESM  E+ +
Sbjct: 533 SGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESM-VEYNV 591

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
            P  EHYACMVDLLGRA +L+EA ++I+ +RI+P P+VWGSLLG+CRIH +VE AE A  
Sbjct: 592 TPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACS 651

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
            LF+LEP NAGNYVLLAD+YA A + ++V  +K LLE   L+KVPG S IEVK+K+YSFV
Sbjct: 652 HLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFV 711

Query: 544 SVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFG 603
           SVD  +PQ E+L AL+     +MK +GYVP T+ VLYD++ EEKERI+LGHSEKLAVAFG
Sbjct: 712 SVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFG 771

Query: 604 LINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           LI T  GE IRITKNLRLCEDCHS TKFISKF ++EI+VRDVNRFHHFRNGVCSC DYW
Sbjct: 772 LIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/625 (56%), Positives = 447/625 (71%), Gaps = 6/625 (0%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDAL 100
           S++P +    N N LIQ+LC  G L +A  +L   P PTQ TYE LLL+       + A 
Sbjct: 33  SSSPGAAQPANANHLIQTLCANGRLARAAALLPGLPAPTQRTYESLLLAAARARDAALAA 92

Query: 101 NVHSHL-TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
            VH  L  D  F  DPFL T+LI  Y+   ++  AR VFD+T  + I+VWNAL +AL LA
Sbjct: 93  AVHRRLEADPVFRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALA 152

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK-HGKEIHASVLRHGY 218
             G+E L     M   G  +  D ++YT+ LKAC+A S   +      +E+HA  +R GY
Sbjct: 153 DHGDEALARLADMGRLGVPV--DSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGY 210

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
               H+ TTLID YA+ G V YA  VF+ M  +NVVSWSAMI CYA+N    +A+ELF++
Sbjct: 211 ALHTHVATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKD 270

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M+    DL PNS+T+VSVL ACA + AL  GK++H YILRRG DS++ V++AL+ MY RC
Sbjct: 271 MMASDADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRC 330

Query: 339 GKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           G LE+G+ +F  +  +RDVVSWNSLIS YG+HG+G +A+Q+F+EMI+ G SPS I+F+SV
Sbjct: 331 GCLEVGRHIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISV 390

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           LGACSHAGLV EGKMLFESM  E+ + P  EHYACMVDLLGRA +L+EA ++I  + IEP
Sbjct: 391 LGACSHAGLVNEGKMLFESM-VEYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEP 449

Query: 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
            P+VWG+LLG+CRIH +VE AE A   LF+LEP NAGNYVLLAD+YA A + ++V  +K 
Sbjct: 450 SPQVWGALLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKE 509

Query: 518 LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKV 577
           LLE   L+KV G S IEVK+K++SF SVD  +P  EQL AL+    A+MK +GYVP T +
Sbjct: 510 LLEEHALEKVTGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGI 569

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           VLYD++ EEKERI++GHSEKLAVAFGLINT  GE IRITKNLRLCEDCHS TKFISKF  
Sbjct: 570 VLYDIEGEEKERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTE 629

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +EI+VRDVNRFHHFR+GVCSCGDYW
Sbjct: 630 REIVVRDVNRFHHFRDGVCSCGDYW 654


>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
          Length = 660

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/641 (54%), Positives = 446/641 (69%), Gaps = 12/641 (1%)

Query: 27  PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELL 86
           P+ S   C  SL S       +  N N L+Q+LC  G L +A  +L   P PTQ TY+ +
Sbjct: 27  PRVSRSRCVASLASQPPTPPPA--NANHLVQTLCASGRLARAAALLQGLPAPTQRTYKSV 84

Query: 87  LLSCTHHNSLSDALNVHSHL-TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LL+       + A  VH  L  D  F  DPFL T+LI+ Y+    +  AR VFD+   ++
Sbjct: 85  LLAAARAGDAALAAAVHRRLKADPVFRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKS 144

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF---SL 202
           I+VWNAL +AL LA  GEE L     M      +  D ++Y + LKAC+A+S      S 
Sbjct: 145 IFVWNALLKALALADHGEEALARLADMGRLRVPV--DSYSYAHGLKACIAASTSHVPASA 202

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L   +EIHA  +R GY    H+ TTLID YA+ G V YA  VF+ M  +NVVSW+AMI C
Sbjct: 203 LV--REIHAHAVRRGYGLHTHVATTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGC 260

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           YA+N    +A+ LF+EM+    DL PNSVT+V +L A A + AL QGK++H YILRRG D
Sbjct: 261 YAKNERPGDAILLFQEMVASDEDLVPNSVTIVCILHAFAGVNALGQGKLLHAYILRRGFD 320

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKR-DVVSWNSLISSYGVHGYGGKAIQIFKE 381
           S++ V++AL+ MY +CG LE G+ +FD +  R DVVSWN+LIS YG+HG+G +A+Q+F++
Sbjct: 321 SLVSVLNALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFED 380

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   GVSP+ I+F+SVLGACSHAGLV+EGK LFESM  ++ + P  EHYACMVDLLGRA 
Sbjct: 381 MTQMGVSPNIITFISVLGACSHAGLVDEGKRLFESM-VDYNVTPRAEHYACMVDLLGRAG 439

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
            L+EA ++I+ + I P P+VWGSLLG+CRIH +VE AE A  +LF+LEP NAGNYVLLAD
Sbjct: 440 HLDEAVELIQGMHIRPSPQVWGSLLGACRIHRHVEYAEMACSQLFDLEPRNAGNYVLLAD 499

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YA A +  EV  +K LLE   L+KVPG S IEVK++++ FVSVD  +PQ E+L AL+  
Sbjct: 500 IYARAKLHSEVGVLKDLLEEHALEKVPGCSWIEVKKRLHMFVSVDNKNPQIEELQALIGE 559

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
              +MK  GYVP T  VLYD++ EEKE+I+LGHSEKLAVAFGLINT +GE IRITKNLRL
Sbjct: 560 FVTQMKNDGYVPDTGAVLYDIEEEEKEKILLGHSEKLAVAFGLINTGRGEVIRITKNLRL 619

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CEDCHS TKFISK+A +EI+VRDVNRFHHFR+G+CSCGDYW
Sbjct: 620 CEDCHSVTKFISKYAEREIIVRDVNRFHHFRDGICSCGDYW 660


>gi|255558954|ref|XP_002520500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540342|gb|EEF41913.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 414

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 310/423 (73%), Positives = 347/423 (82%), Gaps = 11/423 (2%)

Query: 1   MWALQSPQTPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLC 60
           MWA  SPQ     + P H+   +   PKP    C V+LN  T PT+    N N+LIQSLC
Sbjct: 1   MWAFHSPQATT--QPPSHSTFFSRPTPKPP--ICFVNLNP-TIPTA----NSNKLIQSLC 51

Query: 61  KQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTK 120
           KQGNL+QAL++L  EP+P QHTYELLLLSCTH NS  DA  VH HL DNGFDQDPFL TK
Sbjct: 52  KQGNLKQALNLLCNEPDPAQHTYELLLLSCTHQNSFLDAQFVHQHLLDNGFDQDPFLATK 111

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LIN+YS F S+D+AR VFDKTR RT+YV+NALFRALTL G GEEVL LYRRMN  G  + 
Sbjct: 112 LINMYSSFGSIDNARKVFDKTRSRTLYVYNALFRALTLVGNGEEVLRLYRRMNSIG--MP 169

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
           SDRFTYTYVLKACVAS+   SLLK GKEIHA +LR GY   VHIMTTL+DMYARFG V Y
Sbjct: 170 SDRFTYTYVLKACVASNSLLSLLKKGKEIHAQILRRGYEAHVHIMTTLVDMYARFGYVSY 229

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VFS+M+VKNVVSWSAMIACYA+NG  FEALELFREM++E+ D+CPNSVTMVSVLQAC
Sbjct: 230 ASCVFSEMSVKNVVSWSAMIACYAKNGRPFEALELFREMMLETKDMCPNSVTMVSVLQAC 289

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           AALAALEQGK++HGYILRRGLDSILPV+S+LVTMYARCGKL+L Q VFD MDKRDVVSWN
Sbjct: 290 AALAALEQGKLLHGYILRRGLDSILPVISSLVTMYARCGKLQLAQHVFDQMDKRDVVSWN 349

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           SLISSYGVHG+G KAIQIFK+M  +GV PSPISFVSVLGACSHAGLVEEGK+LFESM K+
Sbjct: 350 SLISSYGVHGFGKKAIQIFKDMTRNGVFPSPISFVSVLGACSHAGLVEEGKILFESMHKD 409

Query: 421 HMI 423
           + I
Sbjct: 410 YGI 412


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/616 (42%), Positives = 394/616 (63%), Gaps = 16/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I    + G   +AL + S      I+PN +  T   ++  C H  +L     +H + 
Sbjct: 190 NAIIAGYSQNGQPYEALALFSEMQVNGIKPNSS--TLVSVMPVCAHLLALEQGKQIHCYA 247

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             +G + D  +V  L+N+Y+   +V+ A  +F++   R +  WNA+    +L  +  E L
Sbjct: 248 IRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEAL 307

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
             + RM   G  I+ +  T   VL AC         L+ G++IH   +R G+     +  
Sbjct: 308 AFFNRMQVRG--IKPNSITMVSVLPACAH----LFALEQGQQIHGYAIRSGFESNDVVGN 361

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L++MYA+ G V  A  +F +M  KNVV+W+A+I+ Y+++G   EAL LF EM  ++  +
Sbjct: 362 ALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEM--QAQGI 419

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+S  +VSVL ACA   ALEQGK IHGY +R G +S + V + LV +YA+CG +   Q 
Sbjct: 420 KPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQK 479

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +F+ M ++DVVSW ++I +YG+HG+G  A+ +F +M   G     I+F ++L ACSHAGL
Sbjct: 480 LFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGL 539

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V++G   F+ M+ ++ + P +EHYAC+VDLLGRA  L+EA  II+++ +EP   VWG+LL
Sbjct: 540 VDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALL 599

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+CRIHCN+EL E+A+K LFEL+P NAG YVLL+++YA A  W++V +++++++ +G++K
Sbjct: 600 GACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKK 659

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S + V R + +F+  D  HPQ EQ++A+L  L  +M++ GYVP T + L D++ E 
Sbjct: 660 QPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEA 719

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE I+  HSEKLA++FG+INTS G  IRI KNLR+C DCH+ TKFISK   +EI+VRD N
Sbjct: 720 KENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDAN 779

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHH +NG CSCGDYW
Sbjct: 780 RFHHVKNGFCSCGDYW 795



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 137/406 (33%), Positives = 216/406 (53%), Gaps = 18/406 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           NP +  +  ++ +C   + L     VH  +   GF+ D  + T L ++Y+   S+++AR 
Sbjct: 117 NPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQ 176

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD+  +R +  WNA+    +  G+  E L L+  M     GI+ +  T   V+  C   
Sbjct: 177 VFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQ--VNGIKPNSSTLVSVMPVCAH- 233

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+ GK+IH   +R G    V ++  L++MYA+ G V  A  +F +M +++V SW
Sbjct: 234 ---LLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASW 290

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +A+I  Y+ N    EAL  F    M+   + PNS+TMVSVL ACA L ALEQG+ IHGY 
Sbjct: 291 NAIIGGYSLNSQHHEALAFFNR--MQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYA 348

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           +R G +S   V +ALV MYA+CG +     +F+ M K++VV+WN++IS Y  HG+  +A+
Sbjct: 349 IRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEAL 408

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC---- 432
            +F EM   G+ P   + VSVL AC+H   +E+GK +       + IR   E        
Sbjct: 409 ALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQI-----HGYTIRSGFESNVVVGTG 463

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
           +VD+  +   +  A K+ E +  E     W +++ +  IH + E A
Sbjct: 464 LVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILAYGIHGHGEDA 508



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/271 (38%), Positives = 156/271 (57%), Gaps = 8/271 (2%)

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           R    VW          G   + L LY +M  TG  I  D+  +  V+KAC + S     
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTG--INPDKLVFLSVIKACGSQSD---- 135

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L+ G+++H  ++  G+   V + T L  MY + G +  A  VF +M  ++VVSW+A+IA 
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAG 195

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y++NG  +EAL LF E  M+ + + PNS T+VSV+  CA L ALEQGK IH Y +R G++
Sbjct: 196 YSQNGQPYEALALFSE--MQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIE 253

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
           S + VV+ LV MYA+CG +     +F+ M  RDV SWN++I  Y ++    +A+  F  M
Sbjct: 254 SDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRM 313

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
              G+ P+ I+ VSVL AC+H   +E+G+ +
Sbjct: 314 QVRGIKPNSITMVSVLPACAHLFALEQGQQI 344



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 127/228 (55%), Gaps = 13/228 (5%)

Query: 245 FSQMAVKN-VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           F+Q  ++N  V W   I  Y +NG   +AL L+ +M  +   + P+ +  +SV++AC + 
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQM--QRTGINPDKLVFLSVIKACGSQ 133

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
           + L+ G+ +H  I+ RG +S + V +AL +MY +CG LE  + VFD M KRDVVSWN++I
Sbjct: 134 SDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAII 193

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           + Y  +G   +A+ +F EM  +G+ P+  + VSV+  C+H   +E+GK +       + I
Sbjct: 194 AGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQI-----HCYAI 248

Query: 424 RPSVEHYAC----MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           R  +E        +V++  +   +  A K+ E + I      W +++G
Sbjct: 249 RSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVAS-WNAIIG 295


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/560 (44%), Positives = 371/560 (66%), Gaps = 8/560 (1%)

Query: 103  HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
            H+ +   G   D  ++TK   +Y  F+ +D A  VF+       ++WN + R     GR 
Sbjct: 740  HAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRF 799

Query: 163  EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
               LELY +M     G++ D+F + + LK+C     G S L+ GK IH  ++  G +  +
Sbjct: 800  LSSLELYSKM--MEKGLKPDKFAFPFALKSCA----GLSDLQRGKVIHQHLVCCGCSNDL 853

Query: 223  HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
             +   L+DMYA+ G +  A  VF +MAV+++VSW++MI+ YA NG   E L  F   +M 
Sbjct: 854  FVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFD--LMR 911

Query: 283  SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
            S  + PN V+++SVL AC  L AL +G+  H Y+++ G +  + V +A++ MY++CG L+
Sbjct: 912  SSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLD 971

Query: 343  LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
            L +C+FD    +D+V W+++I+SYG+HG+G KAI +F +M+  GV PS ++F  VL ACS
Sbjct: 972  LARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACS 1031

Query: 403  HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
            H+GL+EEGKM F+ M +E +I   + +YACMVDLLGRA +L EA  +IE++ +EP   +W
Sbjct: 1032 HSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIW 1091

Query: 463  GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
            GSLLG+CRIH N++LAE+ +  LF L+P +AG +VLL+++YAA   W+EV++V++++  R
Sbjct: 1092 GSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARR 1151

Query: 523  GLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
            G  K+ G S +E   +++ F   D  HPQ+E+L+A L  L+A MK  GYVP T  VL+D+
Sbjct: 1152 GANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDI 1211

Query: 583  DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILV 642
            + E KE  +  HSE+LA+AFGLINTS G T+RITKNLR+C DCH+  K ISK  N+ ILV
Sbjct: 1212 EEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILV 1271

Query: 643  RDVNRFHHFRNGVCSCGDYW 662
            RD++RFH F +GVCSCGDYW
Sbjct: 1272 RDMHRFHRFEDGVCSCGDYW 1291



 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 181/484 (37%), Positives = 293/484 (60%), Gaps = 9/484 (1%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH  +    FD D  LV  L+N+Y+       A ++F K   + +  W+ +         
Sbjct: 228 VHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEA 287

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
             E L L+  M         +  T    L+AC  S      L+ GK+IH   +  G+   
Sbjct: 288 ANEALNLFHEM--IEKRFEPNSVTVVSALQACAVSRN----LEEGKKIHKIAVWKGFELD 341

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
             + T LIDMY +  C   A  +F ++  K+VVSW A+++ YA+NGMA++++ +FR M+ 
Sbjct: 342 FSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNML- 400

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
            S  + P++V +V +L A + L   +Q   +HGY++R G +S + V ++L+ +Y++CG L
Sbjct: 401 -SDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSL 459

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGA 400
                +F  M  RDVV W+S+I++YG+HG GG+A++IF +M+ +  V P+ ++F+S+L A
Sbjct: 460 GDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSA 519

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
           CSHAGLVEEG  +F+ M  ++ +RP  EH+  MVDLLGR  +L +A  II  + I  GP 
Sbjct: 520 CSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPH 579

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
           VWG+LLG+CRIH N+E+ E A+K LF L+P++AG Y+LL+++YA    WD V  ++  ++
Sbjct: 580 VWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIK 639

Query: 521 ARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY 580
            RGL+K+ G+S +EV+  ++SF++ D FHP  ++++ LL  L A+M ++ Y+P    +L+
Sbjct: 640 ERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLH 699

Query: 581 DLDA 584
           D  A
Sbjct: 700 DTGA 703



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 181/329 (55%), Gaps = 10/329 (3%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           L  +C +  S+S    +HS +   G   D F  TKL ++Y+   S+  AR VFD+T    
Sbjct: 10  LFQACNNGRSVS---QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +++WN+  R+     + EE L L+  M  T  G   D FT    LKAC     G  +L+ 
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICT-AGEAPDNFTIPIALKACA----GLRMLEL 121

Query: 206 GKEIHASVLRHGYNGI-VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           GK IH    ++   G  + + + L+++Y++ G +  A  VF +    + V W++M+  Y 
Sbjct: 122 GKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQ 181

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           +N    EAL LF +M+M    +  + VT+VSV+ ACA L  ++ G  +HG ++RR  D  
Sbjct: 182 QNNDPEEALALFSQMVMMDC-VVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGD 240

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           LP+V++L+ +YA+ G  ++   +F  M ++DV+SW+++I+ Y  +    +A+ +F EMI 
Sbjct: 241 LPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIE 300

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKML 413
               P+ ++ VS L AC+ +  +EEGK +
Sbjct: 301 KRFEPNSVTVVSALQACAVSRNLEEGKKI 329



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 208/463 (44%), Gaps = 61/463 (13%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPT-QHTYELLLLSC-THHNSLSDALNVHSHLTDNGFD 112
           ++  L + G L +A+D+++  P P   H +  LL +C  HHN     + +      N F 
Sbjct: 552 MVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHN-----IEMGEAAAKNLFW 606

Query: 113 QDP------FLVTKLINVYSHFDSVDDAR-----------------------HVFDKTRR 143
            DP       L++ +  V   +D+V + R                       H F  + R
Sbjct: 607 LDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDR 666

Query: 144 -----RTIYVWNALFRALTLAGRGEEVL--ELYRRMNGTGTGIRS-DRFTYTYVLKACVA 195
                + IY    L R L  A  G+EV   +L   ++ TG  ++   R   T      + 
Sbjct: 667 FHPDSQKIY---ELLRKLE-AQMGKEVYIPDLDFLLHDTGAVLQFWQRIKATESKYKTIG 722

Query: 196 SSCG------FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           S+ G      FS LK   + HA +  +G      I+T    MY  F  +  A  VF  + 
Sbjct: 723 SAPGTDTISCFSCLK---KTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIP 779

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
                 W+ MI  +A +G    +LEL+ +M+ +   L P+       L++CA L+ L++G
Sbjct: 780 NPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKG--LKPDKFAFPFALKSCAGLSDLQRG 837

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           K+IH +++  G  + L V +ALV MYA+CG +E  + VFD M  RD+VSW S+IS Y  +
Sbjct: 838 KVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHN 897

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           GY  + +  F  M   GV P+ +S +SVL AC + G + +G+  F S   +      +  
Sbjct: 898 GYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEW-FHSYVIQTGFEFDILV 956

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
              ++D+  +   L + A+ + D         W +++ S  IH
Sbjct: 957 ATAIMDMYSKCGSL-DLARCLFDETAGKDLVCWSAMIASYGIH 998



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 155/327 (47%), Gaps = 22/327 (6%)

Query: 53   NELIQSLCKQGNLRQALDVLS--IEPN--PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
            N +I+     G    +L++ S  +E    P +  +   L SC   + L     +H HL  
Sbjct: 787  NVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVC 846

Query: 109  NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
             G   D F+   L+++Y+    ++ AR VFDK   R +  W ++       G   E L  
Sbjct: 847  CGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGF 906

Query: 169  YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            +  M    +G+  +R +   VL AC         L+ G+  H+ V++ G+   + + T +
Sbjct: 907  FDLMR--SSGVIPNRVSILSVLLAC----GNLGALRKGEWFHSYVIQTGFEFDILVATAI 960

Query: 229  IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
            +DMY++ G +  A  +F + A K++V WSAMIA Y  +G   +A++LF +M+     + P
Sbjct: 961  MDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAG--VRP 1018

Query: 289  NSVTMVSVLQACAALAALEQGK-----MIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
            + VT   VL AC+    LE+GK     M   +++ R L +     + +V +  R G+L  
Sbjct: 1019 SHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSN----YACMVDLLGRAGQLSE 1074

Query: 344  GQCVFDHMD-KRDVVSWNSLISSYGVH 369
               + ++M  + D   W SL+ +  +H
Sbjct: 1075 AVDLIENMPVEPDASIWGSLLGACRIH 1101



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 18/283 (6%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
            EPN    T    L +C    +L +   +H      GF+ D  + T LI++Y      D+
Sbjct: 303 FEPNSV--TVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDE 360

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  +F +  ++ +  W AL       G   + + ++R M     GI+ D      +L   
Sbjct: 361 AVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNM--LSDGIQPDAVAVVKIL--- 415

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
            A+S    + +    +H  V+R G+N  V +  +LI++Y++ G +  A  +F  M V++V
Sbjct: 416 -AASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDV 474

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG---- 309
           V WS+MIA Y  +G   EALE+F +M+  S  + PN+VT +S+L AC+    +E+G    
Sbjct: 475 VIWSSMIAAYGIHGRGGEALEIFDQMVKNS-TVRPNNVTFLSILSACSHAGLVEEGLKIF 533

Query: 310 -KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
            +M+H Y LR   +        +V +  R G+L     + + M
Sbjct: 534 DRMVHDYQLRPDSEHF----GIMVDLLGRIGQLGKAMDIINRM 572



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 5/176 (2%)

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
            +V + QAC    ++ Q   +H  + + G+       + L ++YA+C  L+  + VFD  
Sbjct: 6   VLVDLFQACNNGRSVSQ---LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDET 62

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSHAGLVEEG 410
              +V  WNS + SY       + +++F  MI   G +P   +    L AC+   ++E G
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           K++    +K   I   +   + +V+L  +  ++ EA K+ E+ +  P   +W S++
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMV 177


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 265/614 (43%), Positives = 385/614 (62%), Gaps = 12/614 (1%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I  L + G   +A +V +        P + TY +LL +C +  +L     +HS +  
Sbjct: 297 NTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAK 356

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF  D  +   LI++YS   S+ DAR VFDK  R+ +  W A+   L  +G G E L +
Sbjct: 357 AGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTV 416

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           Y+ M   G  +  +R TYT +L AC + +     L+ G+ IH  V+  G     H+  TL
Sbjct: 417 YQEMQQAG--VEPNRVTYTSILNACSSPAA----LEWGRRIHQQVVEAGLATDAHVGNTL 470

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           ++MY+  G V  A  VF +M  +++V+++AMI  YA + +  EAL+LF  +  +   L P
Sbjct: 471 VNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRL--QEEGLKP 528

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + VT +++L ACA   +LE  + IH  + + G  S   V +ALV+ YA+CG       VF
Sbjct: 529 DKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVF 588

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + M KR+V+SWN++I     HG G  A+Q+F+ M   GV P  ++FVS+L ACSHAGL+E
Sbjct: 589 EKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLE 648

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG+  F SM ++  I P++EHY CMVDLLGRA +L+EA  +I+ +  +   ++WG+LLG+
Sbjct: 649 EGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGA 708

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH NV +AERA++   +L+  NA  YV L+ +YAAA MWD   ++++L+E RG+ K P
Sbjct: 709 CRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEP 768

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           GRS I+V  K++ FV+ D  HPQ E+++A L  L+  MK KGYVP T+ V++D+D  EKE
Sbjct: 769 GRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKE 828

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             V  HSE+LA+A+GLI+T  G  I I KNLR+C DCH+ TKFISK  ++EI+ RDVNRF
Sbjct: 829 NAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRF 888

Query: 649 HHFRNGVCSCGDYW 662
           HHF++GVCSCGDYW
Sbjct: 889 HHFKDGVCSCGDYW 902



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 211/395 (53%), Gaps = 10/395 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + TY  +L + +   +L     VHS + + G + D  + T L+ +Y+   S  D R V
Sbjct: 225 PNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQV 284

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+K   R +  WN +   L   G  EE  E+Y +M     G+  ++ TY  +L ACV S+
Sbjct: 285 FEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQ--REGVMPNKITYVILLNACVNSA 342

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  GKEIH+ V + G+   + +   LI MY+R G +  A  VF +M  K+V+SW+
Sbjct: 343 A----LHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWT 398

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI   A++G   EAL +++E  M+   + PN VT  S+L AC++ AALE G+ IH  ++
Sbjct: 399 AMIGGLAKSGFGAEALTVYQE--MQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVV 456

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
             GL +   V + LV MY+ CG ++  + VFD M +RD+V++N++I  Y  H  G +A++
Sbjct: 457 EAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALK 516

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F  +   G+ P  ++++++L AC+++G +E  + +   +RK      +    A +V   
Sbjct: 517 LFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNA-LVSTY 575

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            +     +A+ + E +  +     W +++G    H
Sbjct: 576 AKCGSFSDASIVFEKM-TKRNVISWNAIIGGSAQH 609



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++    + G + +AL +L         P + T    L SC    +L     +H     
Sbjct: 95  NAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQ 154

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   D  +   ++N+Y+   S+++AR VFDK  ++++  W          GR E   E+
Sbjct: 155 AGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEI 214

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +++M     G+  +R TY  VL A  + +     LK GK +H+ +L  G+     + T L
Sbjct: 215 FQKME--QEGVVPNRITYISVLNAFSSPAA----LKWGKAVHSRILNAGHESDTAVGTAL 268

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           + MYA+ G       VF ++  +++++W+ MI   A  G   EA E++ +M  E   + P
Sbjct: 269 VKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREG--VMP 326

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N +T V +L AC   AAL  GK IH  + + G  S + V +AL++MY+RCG ++  + VF
Sbjct: 327 NKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVF 386

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M ++DV+SW ++I      G+G +A+ +++EM   GV P+ +++ S+L ACS    +E
Sbjct: 387 DKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALE 446

Query: 409 EGKMLFESM 417
            G+ + + +
Sbjct: 447 WGRRIHQQV 455



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 214/440 (48%), Gaps = 43/440 (9%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  +L  C     L     VH H+  +    D + V  LIN+Y    S+++AR V+ K  
Sbjct: 26  YMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLS 85

Query: 143 --RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
              RT++ WNA+       G  E+ L+L R+M   G  +  DR T    L +C +     
Sbjct: 86  YMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHG--LAPDRTTIMSFLSSCKSPGA-- 141

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             L+ G+EIH   ++ G    V +   +++MYA+ G +  A  VF +M  K+VVSW+  I
Sbjct: 142 --LEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITI 199

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             YA  G +  A E+F++M  E   + PN +T +SVL A ++ AAL+ GK +H  IL  G
Sbjct: 200 GGYADCGRSETAFEIFQKM--EQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAG 257

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
            +S   V +ALV MYA+CG  +  + VF+ +  RD+++WN++I      GY  +A +++ 
Sbjct: 258 HESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYN 317

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK--------------------- 419
           +M   GV P+ I++V +L AC ++  +  GK +   + K                     
Sbjct: 318 QMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCG 377

Query: 420 ---------EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR---IEPGPKVWGSLLG 467
                    + M+R  V  +  M+  L ++    EA  + ++++   +EP    + S+L 
Sbjct: 378 SIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILN 437

Query: 468 SCRIHCNVELAERASKRLFE 487
           +C     +E   R  +++ E
Sbjct: 438 ACSSPAALEWGRRIHQQVVE 457



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 93/168 (55%), Gaps = 5/168 (2%)

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           NS   + +L+ C  +  L  G+ +H +I++         V+AL+ MY +CG +E  + V+
Sbjct: 22  NSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVW 81

Query: 349 DHMD--KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
             +   +R V SWN+++  Y  +GY  KA+++ ++M  HG++P   + +S L +C   G 
Sbjct: 82  KKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGA 141

Query: 407 VEEGKML-FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           +E G+ + F++M+   +    V +  C++++  +   +EEA ++ + +
Sbjct: 142 LEWGREIHFQAMQAGLLFDVKVAN--CILNMYAKCGSIEEAREVFDKM 187


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 261/614 (42%), Positives = 387/614 (63%), Gaps = 12/614 (1%)

Query: 53   NELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
            N +I  L + GN  +A ++          P + TY +LL +C +  +L     +HS +  
Sbjct: 415  NTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVK 474

Query: 109  NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            +GF  D  +   LI++Y+   S+ DAR +F+K  R+ I  W A+   L  +G G E L +
Sbjct: 475  DGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAV 534

Query: 169  YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            ++ M   G  ++ +R TYT +L AC + +     L  G+ IH  V+  G     H+  TL
Sbjct: 535  FQDMQQAG--LKPNRVTYTSILNACSSPAA----LDWGRRIHQQVIEAGLATDAHVANTL 588

Query: 229  IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
            ++MY+  G V  A  VF +M  +++V+++AMI  YA + +  EAL+LF  +  +   L P
Sbjct: 589  VNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRL--QEEGLKP 646

Query: 289  NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
            + VT +++L ACA   +LE  K IH  +L+ G  S   + +ALV+ YA+CG       VF
Sbjct: 647  DKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVF 706

Query: 349  DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
            D M KR+V+SWN++I     HG G   +Q+F+ M   G+ P  ++FVS+L ACSHAGL+E
Sbjct: 707  DKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLE 766

Query: 409  EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            EG+  F SM ++  I P++EHY CMVDLLGRA +L+E   +I+ +  +   ++WG+LLG+
Sbjct: 767  EGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGA 826

Query: 469  CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
            CRIH NV +AERA++   +L+P NA  YV L+ +YAAA MWD   ++++L+E RG+ K P
Sbjct: 827  CRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEP 886

Query: 529  GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
            GRS IEV  K++ FV+ D  HP+ E+++A L  L+  MK +GYVP T+ V++D+D  EKE
Sbjct: 887  GRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKE 946

Query: 589  RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
              V  HSE+LA+A+GLI+T  G  IRI KNLR+C DCH+ TKFI+K  ++EI+ RDVNRF
Sbjct: 947  NAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRF 1006

Query: 649  HHFRNGVCSCGDYW 662
            HHF++GVCSCGDYW
Sbjct: 1007 HHFKDGVCSCGDYW 1020



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 216/395 (54%), Gaps = 10/395 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + TY  +L + +   +L     VHSH+ + G + D  + T L+ +Y+   S  D R V
Sbjct: 343 PNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQV 402

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+K   R +  WN +   L   G  EE  E+Y +M     G+  ++ TY  +L ACV  +
Sbjct: 403 FEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQ--REGMMPNKITYVILLNACVNPT 460

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  G+EIH+ V++ G+   + +   LI MYAR G +  A  +F++M  K+++SW+
Sbjct: 461 A----LHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWT 516

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI   A++G+  EAL +F++  M+   L PN VT  S+L AC++ AAL+ G+ IH  ++
Sbjct: 517 AMIGGLAKSGLGAEALAVFQD--MQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVI 574

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
             GL +   V + LV MY+ CG ++  + VFD M +RD+V++N++I  Y  H  G +A++
Sbjct: 575 EAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALK 634

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F  +   G+ P  ++++++L AC+++G +E  K +   + K+  +  +    A +V   
Sbjct: 635 LFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNA-LVSTY 693

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            +     +A  ++ D  ++     W +++G C  H
Sbjct: 694 AKCGSFSDAL-LVFDKMMKRNVISWNAIIGGCAQH 727



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 139/522 (26%), Positives = 248/522 (47%), Gaps = 62/522 (11%)

Query: 4   LQSPQTPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKN---ELIQSLC 60
           + S    + L+  +++N I +   +  +      L+S T     +   K+   +++Q L 
Sbjct: 78  MHSQSRVKFLKRWFNSNGIRYFNGRSKAN----KLHSHTYKDERTITGKDRAMDVVQYLQ 133

Query: 61  KQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTK 120
           +QG    + D            Y  +L  C     L     VH H+  +    D + V  
Sbjct: 134 QQGARVNSCD------------YMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNA 181

Query: 121 LINVYSHFDSVDDARHVFDKTR--RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           LIN+Y    S+++AR V++K     RT++ WNA+       G  EE L+L R M   G  
Sbjct: 182 LINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLA 241

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           +   R T   +L +C + S     L+ G+EIH   ++      V++   +++MYA+ G +
Sbjct: 242 L--GRATTMRLLSSCKSPSA----LECGREIHVEAMKARLLFDVNVANCILNMYAKCGSI 295

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
             A  VF +M  K+VVSW+ +I  YA  G +  A E+F++M  E   + PN +T ++VL 
Sbjct: 296 HEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEG--VVPNRITYINVLN 353

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           A +  AAL+ GK +H +IL  G +S L V +ALV MYA+CG  +  + VF+ +  RD+++
Sbjct: 354 AFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIA 413

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS-----------HAGLV 407
           WN++I      G   +A +I+ +M   G+ P+ I++V +L AC            H+ +V
Sbjct: 414 WNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVV 473

Query: 408 EEGKMLFESMRK-------------------EHMIRPSVEHYACMVDLLGRANKLEEAAK 448
           ++G M   S++                      M+R  +  +  M+  L ++    EA  
Sbjct: 474 KDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALA 533

Query: 449 IIEDLR---IEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           + +D++   ++P    + S+L +C     ++   R  +++ E
Sbjct: 534 VFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIE 575


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 257/586 (43%), Positives = 375/586 (63%), Gaps = 9/586 (1%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            PT   Y  LL SC    ++     +H+ +   GF  D  + TKL+N+Y   DS+  AR 
Sbjct: 72  TPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARL 131

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FD+  +  I++WN L R     G  E  ++LY +M     G+  D FT+ +VLKAC A 
Sbjct: 132 LFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQM--FDYGLVPDNFTFPFVLKACAA- 188

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
               S ++HG+EIH  V++ G+   V +   LIDMYA+ GCV  A  VF ++ V++ V W
Sbjct: 189 ---LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLW 245

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           ++M+A Y++NG     L L  EM++    L P   T+V+ + A A  AAL QG+ +HG  
Sbjct: 246 NSMLAAYSQNGHPDACLSLCSEMVLTG--LRPTEATLVTAISASADNAALPQGRELHGLS 303

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            R+  +S   V +ALV MYA+CG + + + +F+ +  + VVSWN++I+ Y +HG+  +A+
Sbjct: 304 WRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEAL 363

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F+EM      P  I+FV VL ACSH GL+EEG M FE+M +++ I P+V+HY CMVDL
Sbjct: 364 DLFEEM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDL 422

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LG + +L+EA  +I  +++ P   VWG+LL SC+IH NVEL E A +RL ELEP +AGNY
Sbjct: 423 LGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNY 482

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           V+L+++YA A  W+ V ++++L+  R L+K    S IEVK K+++F+S D  HP  ++++
Sbjct: 483 VILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIY 542

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
           + L  +   MKE GY P T  V +D++ +EK  +V  HSE+LA+AFGLI+T  G  + IT
Sbjct: 543 SELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLIT 602

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+CEDCH   KFISK   +EI VRDVNR+HHF++GVCSCGDYW
Sbjct: 603 KNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 15/232 (6%)

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           ES  L P      S+LQ+C A  A++ GK +H  +   G      + + LV +Y  C  L
Sbjct: 67  ESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSL 126

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
              + +FD + K ++  WN LI  Y  +G    A+Q++ +M  +G+ P   +F  VL AC
Sbjct: 127 SSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKAC 186

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEH----YACMVDLLGRANKLEEAAKIIEDLRIEP 457
           +    +E G+ +      EH+++   E      A ++D+  +   +  A ++ + + +  
Sbjct: 187 AALSAIEHGREI-----HEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRD 241

Query: 458 GPKVWGSLLG--SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507
              +W S+L   S   H +  L+  +   L  L PT A    L+  + A+AD
Sbjct: 242 A-VLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEA---TLVTAISASAD 289


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 252/648 (38%), Positives = 392/648 (60%), Gaps = 48/648 (7%)

Query: 55  LIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +IQ+  +   L +A ++    L    +P   T+  LL SC    +L+    +HSH+++ G
Sbjct: 229 IIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERG 288

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE-----EV 165
            + D  +   LI +Y   +SV +AR +FD+  +R +  W+A+      +G  +     EV
Sbjct: 289 LETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEV 348

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
            +L  RM   G  +  ++ T+  +L+AC A       L+ G++IHA + + G+     + 
Sbjct: 349 FQLLERMRREG--VFPNKVTFMSILRACTAHGA----LEQGRQIHAELSKVGFELDRSLQ 402

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA--------------------------- 258
           T + +MYA+ G +  A  VFS+MA KNVV+W++                           
Sbjct: 403 TAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVV 462

Query: 259 ----MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
               MIA YA+NG   +  EL   M  E     P+ VT++++L+AC ALA LE+GK++H 
Sbjct: 463 SWNLMIAGYAQNGDIVKVFELLSSMKAEGFQ--PDRVTVITILEACGALAGLERGKLVHA 520

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
             ++ GL+S   V ++L+ MY++CG++   + VFD M  RD V+WN++++ YG HG G +
Sbjct: 521 EAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLE 580

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A+ +FK M+   VSP+ I+  +V+ ACS AGLV+EG+ +F  M+++  + P  +HY CMV
Sbjct: 581 AVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMV 640

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           DLLGRA +L+EA + I+ +  EP   VW +LLG+C+ H NV+LAERA+  + ELEP+ A 
Sbjct: 641 DLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYAS 700

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
            Y+ L+++YA A  WD+  +V+R+++ RGL+K  G S IE+  ++++FV+ D  HP+ + 
Sbjct: 701 VYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDA 760

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
           +HA L  L+ EMKE GY P  + VL+D+D  +KE+ +  HSEKLA+A+GL+ T  G  IR
Sbjct: 761 IHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIR 820

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I KNLR+C DCH+ TKFISK   +EI+ RD NRFH+F NG CSCGD+W
Sbjct: 821 IMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 129/385 (33%), Positives = 205/385 (53%), Gaps = 21/385 (5%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNP----TQHTYELLLLSCTHHNSLSDA 99
           PTS+S       +  LCK G LR+A+ +L I          +TY  ++  C       D 
Sbjct: 20  PTSVSGGE----VWRLCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDG 75

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
             VH  L + G + D +L   LIN YS F+ V  A  VF +   R +  W+++  A    
Sbjct: 76  KMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGN 135

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
               +  + + RM  T   I  +R T+  +LKAC      +S+L+ G++IH  V   G  
Sbjct: 136 NHPAKAFDTFERM--TDANIEPNRITFLSILKAC----NNYSILEKGRKIHTIVKAMGME 189

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             V + T LI MY++ G +  A  VF +M  +NVVSW+A+I   A++    EA EL+ +M
Sbjct: 190 TDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQM 249

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           +     + PN+VT VS+L +C    AL +G+ IH +I  RGL++ + V +AL+TMY +C 
Sbjct: 250 LQAG--ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCN 307

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK-----AIQIFKEMIYHGVSPSPISF 394
            ++  + +FD M KRDV+SW+++I+ Y   GY  K       Q+ + M   GV P+ ++F
Sbjct: 308 SVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTF 367

Query: 395 VSVLGACSHAGLVEEGKMLFESMRK 419
           +S+L AC+  G +E+G+ +   + K
Sbjct: 368 MSILRACTAHGALEQGRQIHAELSK 392



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 177/377 (46%), Gaps = 46/377 (12%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
           +IEPN    T+  +L +C +++ L     +H+ +   G + D  + T LI +YS    + 
Sbjct: 152 NIEPNRI--TFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEIS 209

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
            A  VF K   R +  W A+ +A     +  E  ELY +M     GI  +  T+  +L +
Sbjct: 210 VACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQM--LQAGISPNAVTFVSLLNS 267

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
           C         L  G+ IH+ +   G    + +   LI MY +   V  A  +F +M+ ++
Sbjct: 268 CNTPEA----LNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRD 323

Query: 253 VVSWSAMIACYARNGMA-----FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           V+SWSAMIA YA++G        E  +L   M  E   + PN VT +S+L+AC A  ALE
Sbjct: 324 VISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREG--VFPNKVTFMSILRACTAHGALE 381

Query: 308 QGKMIH------GYILRRGLDSIL-----------------------PVV--SALVTMYA 336
           QG+ IH      G+ L R L + +                        VV  ++ ++MY 
Sbjct: 382 QGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYI 441

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CG L   + VF  M  R+VVSWN +I+ Y  +G   K  ++   M   G  P  ++ ++
Sbjct: 442 KCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVIT 501

Query: 397 VLGACSHAGLVEEGKML 413
           +L AC     +E GK++
Sbjct: 502 ILEACGALAGLERGKLV 518



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 167/298 (56%), Gaps = 9/298 (3%)

Query: 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
           L  AGR  E ++L   +   G  + S+  TY  V++ C  +       + GK +H  +  
Sbjct: 31  LCKAGRLREAIQLLGIIKQRGLLVNSN--TYGCVIEHCAKAR----RFEDGKMVHKQLDE 84

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
            G    +++  +LI+ Y++F  V  A  VF +M +++VV+WS+MIA YA N    +A + 
Sbjct: 85  LGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDT 144

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F  M     ++ PN +T +S+L+AC   + LE+G+ IH  +   G+++ + V +AL+TMY
Sbjct: 145 FERMT--DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMY 202

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ++CG++ +   VF  M +R+VVSW ++I +   H    +A +++++M+  G+SP+ ++FV
Sbjct: 203 SKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFV 262

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           S+L +C+    +  G+ +   + +  +    +   A ++ +  + N ++EA +I + +
Sbjct: 263 SLLNSCNTPEALNRGRRIHSHISERGLETDMIVANA-LITMYCKCNSVQEAREIFDRM 319


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/580 (43%), Positives = 369/580 (63%), Gaps = 9/580 (1%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  LL SC    ++     +H+ +   G   +P L TKL+N+Y   +S+ +A  +FD+  
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           +R +++WN + R     G  E  + LY +M   G  +  D+FT+ +VLKAC A     S 
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYG--LVPDKFTFPFVLKACSA----LSA 117

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           ++ GK+IH  V+R G    V +   LIDMYA+ GCV  A  VF ++  ++VV W++M+A 
Sbjct: 118 MEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLAT 177

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y++NG   E+L L R  +M  + L P   T V  + A A    L QGK +HGY  R G +
Sbjct: 178 YSQNGQPDESLALCR--VMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFE 235

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
           S   V +AL+ MYA+ G + + + +F+ ++++ VVSWN++I+ Y +HG+  +A+ +FKEM
Sbjct: 236 SNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM 295

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
               V P  I+FV VL ACSH GL+ EGKM F SM  +  I P+V+HY CM+DLLG   +
Sbjct: 296 -KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGR 354

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           LEEA K+I ++R+EP   VWG+LL SC+IH NVE+ E A ++L ELEP + GNYV+L+++
Sbjct: 355 LEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNM 414

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           YA A  WD V R++ L+  +GL+K    S IEV  K+++F+S D  HP+ E ++A L   
Sbjct: 415 YAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRT 474

Query: 563 SAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLC 622
              MKE GY PQ   V +D++ +EK  +V  HSE+LA+AFGLI+TS G  + I KNLR+C
Sbjct: 475 GKLMKEAGYAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRIC 534

Query: 623 EDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           EDCH   KFISK   +EI +RDVNR+HHF++GVCSCGD+W
Sbjct: 535 EDCHVAIKFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 151/297 (50%), Gaps = 15/297 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T+  +L +C+  +++ +   +H  +  +G + D F+   LI++Y+    V+ AR V
Sbjct: 100 PDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQV 159

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FDK   R +  WN++    +  G+ +E L L R M   G       F  +      +A+S
Sbjct: 160 FDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVIS------IAAS 213

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
               LL  GKE+H    RHG+     + T L+DMYA+ G V  A  +F  +  K VVSW+
Sbjct: 214 ADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWN 273

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI  YA +G A EAL+LF+EM      + P+ +T V VL AC+    L +GKM    ++
Sbjct: 274 AMITGYAMHGHANEALDLFKEM---KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMI 330

Query: 318 RRGLDSILPVV---SALVTMYARCGKLELG-QCVFDHMDKRDVVSWNSLISSYGVHG 370
                +I P V   + ++ +   CG+LE   + + +   + D   W +L+ S  +HG
Sbjct: 331 SDF--NIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHG 385


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/648 (38%), Positives = 392/648 (60%), Gaps = 48/648 (7%)

Query: 55  LIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +IQ+  +   L +A ++    L    +P   T+  LL SC    +L+    +HSH+++ G
Sbjct: 251 IIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERG 310

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE-----EV 165
            + D  +   LI +Y   + + DAR  FD+  +R +  W+A+      +G  +     EV
Sbjct: 311 LETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEV 370

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
            +L  RM   G  +  ++ T+  +LKAC         L+ G++IHA + + G+     + 
Sbjct: 371 FQLLERMRREG--VFPNKVTFMSILKACSVHGA----LEQGRQIHAEISKVGFESDRSLQ 424

Query: 226 TTLIDMYARFGCV-----------------------MY--------AGFVFSQMAVKNVV 254
           T + +MYA+ G +                       MY        A  VFS+M+ +NVV
Sbjct: 425 TAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVV 484

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           SW+ MIA YA++G   +  EL   M +E     P+ VT++S+L+AC AL+ALE+GK++H 
Sbjct: 485 SWNLMIAGYAQSGDIAKVFELLSSMKVEGFQ--PDRVTIISILEACGALSALERGKLVHA 542

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
             ++ GL+S   V ++L+ MY++CG++   + VFD +  RD V+WN++++ YG HG G +
Sbjct: 543 EAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPE 602

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A+ +FK M+   V P+ I+F +V+ AC  AGLV+EG+ +F  M+++  ++P  +HY CMV
Sbjct: 603 AVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMV 662

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           DLLGRA +L+EA + I+ +  EP   VW +LLG+C+ H NV+LAE A+  +  LEP+NA 
Sbjct: 663 DLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNAS 722

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
            YV L+++YA A  WD+  +V+++++ +GL+K  G S IE+  ++++FV+ D  HP+ + 
Sbjct: 723 VYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDS 782

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
           +HA L  L+ EMKE GY P  + VL+D+D  +KER +  HSEKLA+A+GL+ T  G  IR
Sbjct: 783 IHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTPIR 842

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I KNLR+C DCH+ TKFISK   +EI+ RD NRFH+F+NG CSCGD+W
Sbjct: 843 IMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 145/484 (29%), Positives = 235/484 (48%), Gaps = 24/484 (4%)

Query: 59  LCKQGNLRQALDVLSIEPNP----TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           LCK G L++A+ +L I          +TY  ++  C       D   VH  L + G   D
Sbjct: 53  LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAID 112

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
            +L   LIN YS F  V     VF +   R +  W+++  A        +  + + RM  
Sbjct: 113 IYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD 172

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
               I  +R T+  +LKAC      +S+L+  +EIH  V   G    V + T LI MY++
Sbjct: 173 AN--IEPNRITFLSILKAC----NNYSMLEKAREIHTVVKASGMETDVAVATALITMYSK 226

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A  +F +M  +NVVSW+A+I   A++    EA EL+ +M+     + PN+VT V
Sbjct: 227 CGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAG--ISPNAVTFV 284

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           S+L +C    AL +G+ IH +I  RGL++ + V +AL+TMY +C  ++  +  FD M KR
Sbjct: 285 SLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKR 344

Query: 355 DVVSWNSLISSYGVHGYGGK-----AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
           DV+SW+++I+ Y   GY  K       Q+ + M   GV P+ ++F+S+L ACS  G +E+
Sbjct: 345 DVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQ 404

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           G+ +   + K           A + ++  +   + EA ++   +        W SLL + 
Sbjct: 405 GRQIHAEISKVGFESDRSLQTA-IFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLL-TM 461

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
            I C  +L   A K   E+   N  ++ L+   YA +    +V  +   ++  G Q  P 
Sbjct: 462 YIKCG-DLTS-AEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQ--PD 517

Query: 530 RSRI 533
           R  I
Sbjct: 518 RVTI 521


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/617 (42%), Positives = 380/617 (61%), Gaps = 36/617 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSH-LTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           P   T    + +CT+ + L     +H + +     D D  +   L++ Y+   SV+ AR 
Sbjct: 360 PNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARR 419

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY---------- 186
            F   ++  +  WNA+     L G  EE +EL   M   G  I  D  T+          
Sbjct: 420 KFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQG--IEPDIITWNGLVTGFTQY 477

Query: 187 ---------------------TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
                                T  +   +A+      LK GKEIH  VLR+       + 
Sbjct: 478 GDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVG 537

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           + LI MY+    +  A  VFS+++ ++VV W+++I+  A++G +  AL+L REM + + +
Sbjct: 538 SALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVE 597

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           +  N+VTMVS L AC+ LAAL QGK IH +I+R GLD+   ++++L+ MY RCG ++  +
Sbjct: 598 V--NTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSR 655

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +FD M +RD+VSWN +IS YG+HG+G  A+ +F++    G+ P+ I+F ++L ACSH+G
Sbjct: 656 RIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSG 715

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           L+EEG   F+ M+ E+ + P+VE YACMVDLL RA +  E  + IE +  EP   VWGSL
Sbjct: 716 LIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSL 775

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           LG+CRIHCN +LAE A++ LFELEP ++GNYVL+A++Y+AA  W++  +++ L++ RG+ 
Sbjct: 776 LGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVT 835

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K PG S IEVKRK++SFV  D  HP  EQ+ A + +L  ++KE GYVP T  VL D+D +
Sbjct: 836 KPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDED 895

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           EKE  + GHSEK+A+AFGLI+T+ G  +RI KNLR+C DCHS TKFISK   ++I++RD 
Sbjct: 896 EKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDN 955

Query: 646 NRFHHFRNGVCSCGDYW 662
            RFHHF +GVCSCGDYW
Sbjct: 956 YRFHHFVDGVCSCGDYW 972



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/497 (27%), Positives = 220/497 (44%), Gaps = 93/497 (18%)

Query: 11  QLLRSPYHTNSIAHLPPK--------PSSVCCCVSLNSSTTPTSLSSRNKNELIQ----- 57
           +++ SP+  NS   + PK        P+  CC V+  ++ +       N  + I      
Sbjct: 2   EIITSPFALNSNFAIQPKGTSPLQTLPTRNCCIVASTNTKSQNLRKLTNARQRITGFSGG 61

Query: 58  -SLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
            S+ + G L  A  +LS      P+     Y  +L  C    +L     VH+ L  NG D
Sbjct: 62  GSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVD 121

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
              FL ++L+ VY     V+DAR +FDK   R ++ W A+       G  EE ++L+  M
Sbjct: 122 VCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLM 181

Query: 173 NGTGTGIRSDRFT--------------------YTYVL------KACVASS-------CG 199
                G+R D F                     Y Y+L       +CV  S       CG
Sbjct: 182 --VNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCG 239

Query: 200 --------FSLLKHGKEIHASVLRHGY------------------NGIVHIMTT---LID 230
                   F  ++       +++  GY                  +G+     T   +I 
Sbjct: 240 RMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIIS 299

Query: 231 MYARFGCVMYAGFVFSQMA-----VKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
            YA+ G    A   F +M        NVVSW+A+IA   +NG  FEAL +FR+M++E   
Sbjct: 300 GYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG-- 357

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELG 344
           + PNS+T+ S + AC  L+ L  G+ IHGY ++   LDS L V ++LV  YA+C  +E+ 
Sbjct: 358 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVA 417

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           +  F  + + D+VSWN++++ Y + G   +AI++  EM + G+ P  I++  ++   +  
Sbjct: 418 RRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQY 477

Query: 405 GLVEEGKMLFESMRKEH 421
           G   +GK   E  ++ H
Sbjct: 478 G---DGKAALEFFQRMH 491



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 153/323 (47%), Gaps = 14/323 (4%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+    + G+ + AL+      S+  +P   T    L +C    +L     +H ++  
Sbjct: 468 NGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLR 527

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           N  +    + + LI++YS  DS++ A  VF +   R + VWN++  A   +GR    L+L
Sbjct: 528 NHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDL 587

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            R MN +   + +   T    L AC       + L+ GKEIH  ++R G +    I+ +L
Sbjct: 588 LREMNLSNVEVNT--VTMVSALPACSK----LAALRQGKEIHQFIIRCGLDTCNFILNSL 641

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY R G +  +  +F  M  +++VSW+ MI+ Y  +G   +A+ LF++    +  L P
Sbjct: 642 IDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQ--FRTMGLKP 699

Query: 289 NSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           N +T  ++L AC+    +E+G K          +D  +   + +V + +R G+       
Sbjct: 700 NHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEF 759

Query: 348 FDHMD-KRDVVSWNSLISSYGVH 369
            + M  + +   W SL+ +  +H
Sbjct: 760 IEKMPFEPNAAVWGSLLGACRIH 782



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 123/232 (53%), Gaps = 2/232 (0%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L+ G ++HA ++ +G +    + + L+++Y + GCV  A  +F +M+ +NV SW+A++  
Sbjct: 105 LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 164

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y   G   E ++LF  M+ E   + P+      V +AC+ L     GK ++ Y+L  G +
Sbjct: 165 YCGLGDYEETIKLFYLMVNEG--VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFE 222

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
               V  +++ M+ +CG++++ +  F+ ++ +DV  WN ++S Y   G   KA++   +M
Sbjct: 223 GNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDM 282

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
              GV P  +++ +++   + +G  EE    F  M      +P+V  +  ++
Sbjct: 283 KLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALI 334



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 11/196 (5%)

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           RNG+   A  L   M + + D C       S+LQ C  L  L  G  +H  ++  G+D  
Sbjct: 66  RNGVLNNAAMLLSSMDLTNPDECIE--IYASILQKCRKLYNLRLGFQVHAQLVVNGVDVC 123

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
             + S L+ +Y + G +E  + +FD M +R+V SW +++  Y   G   + I++F  M+ 
Sbjct: 124 EFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVN 183

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC----MVDLLGRA 440
            GV P    F  V  ACS       GK ++     ++M+    E  +C    ++D+  + 
Sbjct: 184 EGVRPDHFVFPKVFKACSELKNYRVGKDVY-----DYMLSIGFEGNSCVKGSILDMFIKC 238

Query: 441 NKLEEAAKIIEDLRIE 456
            +++ A +  E++  +
Sbjct: 239 GRMDIARRFFEEIEFK 254


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 273/697 (39%), Positives = 404/697 (57%), Gaps = 40/697 (5%)

Query: 4   LQSPQTPQLLRSPYHT----NSIAH----LPPKPSSVC---------CCVSLNSSTTPTS 46
           L S  TP L  SP H     NS+ +    +  +PSS            C ++ +S  P+ 
Sbjct: 3   LISKTTPNLWVSPPHQIHRENSLTYPNGFIFFRPSSKTPLVSSNLYHSCATIGTSVLPSE 62

Query: 47  LSS---RNKNELIQSLCKQGNLRQALDVLSIEPNPTQH--TYELLLLSCTHHNSLSDALN 101
                  + N  I   C+ GNLR+A+++++  P P     TY  +L  C    S+ D   
Sbjct: 63  TIDCKITDYNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRR 122

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +HS +  N  + D  L +KL+ +Y     + + R +FDK     +++WN L       G 
Sbjct: 123 IHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGN 182

Query: 162 GEEVLELYRRMNGTGTG-IRSDRFTYTYV-------LKACVASSCGFSLLKHGKEIHASV 213
             E L L++RM   G   + S R  +  +         + ++      L + G ++   +
Sbjct: 183 FRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQM 242

Query: 214 LRHGYNGIVHIMTT--------LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           L  G N  +  M +        L+DMY++ G +  A  VF  M  ++VVSW++MIA YAR
Sbjct: 243 LLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAR 302

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G++  ++ LF EM  E  DL PNS+TM  +L ACA+LAALE+G+ IHG+ILR G     
Sbjct: 303 EGLSDMSVRLFHEM--EKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDR 360

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +ALV MY +CG L L + +FD + ++D+VSW  +I+ YG+HGYG +AI  F EM   
Sbjct: 361 HVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNS 420

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ P  +SF+S+L ACSH+GL++EG   F  MR    I P  EHYAC+VDLL RA  L +
Sbjct: 421 GIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSK 480

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A K I+ + IEP   +WG+LL  CRI+ +V+LAE+ ++ +FELEP N G YVLLA++YA 
Sbjct: 481 AYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAE 540

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
           A+ W+EVK+++  +  RGL+K PG S IE+K K++ FV+ D  HP   ++  LL      
Sbjct: 541 AEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTR 600

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           MKE+G+ P+ +  L   D  EKE  + GHSEK+A+AFG+++   G+T+R+TKNLR+C DC
Sbjct: 601 MKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDC 660

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H   KF+SK   ++I++RD NRFHHF++G CSC  +W
Sbjct: 661 HEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 255/615 (41%), Positives = 385/615 (62%), Gaps = 15/615 (2%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I +  ++G + +AL +     S    P   TY ++L +CT    L           D
Sbjct: 74  NAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVD 133

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+  D F+   ++N+Y+    +D+A  VFDK  RR +  W  +   L   G+  E +++
Sbjct: 134 QGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDI 193

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           YR+M+     +  D      +++AC  ++ G S  K G  IH  ++R      V + T+L
Sbjct: 194 YRQMHKKR--VEGDGVVMLGLIQAC--TTLGHS--KMGLSIHGYMIRKDIIMDVIVQTSL 247

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +DMYA+ G +  A  VF +M  KNV+SWSA+I+ +A+NG A  AL+L  +M  +S    P
Sbjct: 248 VDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDM--QSFGYKP 305

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCV 347
           +SV++VSVL AC+ +  L+ GK +HGYI+RR   D +    +A++ MY++CG L   + V
Sbjct: 306 DSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVSS--TAVIDMYSKCGSLSFARTV 363

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           FD +  RD +SWN++I+SYG+HG G +A+ +F +M    V P   +F S+L A SH+GLV
Sbjct: 364 FDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLV 423

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           E+G+  F  M  E+ I+PS +HYACMVDLL RA ++EEA ++IE +  EPG  +W +LL 
Sbjct: 424 EKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLS 483

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
            C  H    + E A+K++ EL P + G Y L+++ +A A  WDEV  V+++++  G++KV
Sbjct: 484 GCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKV 543

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           PG S +EV  K+++F+  D+ H Q+E++  +L  L  EMK  GYVP+T+ VL++L+ E K
Sbjct: 544 PGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVK 603

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
           ER++  HSE+LA+AFGL+NT  G  + ITKNLR+C DCH  TKFISK  N+EI+VRDV R
Sbjct: 604 ERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKR 663

Query: 648 FHHFRNGVCSCGDYW 662
           FHHF++GVCSCGDYW
Sbjct: 664 FHHFKDGVCSCGDYW 678



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 198/379 (52%), Gaps = 24/379 (6%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
            KLI  Y+    ++ AR VFDK+ +  +  WNA+  A +  G   E L LY RM     G
Sbjct: 43  AKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRM--ASEG 100

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           +R D  TYT VLKAC  S      L+ G+E     +  GY   V +   ++++YA+ G +
Sbjct: 101 VRPDSSTYTVVLKACTRSLD----LRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKM 156

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
             A  VF +M  +++V W+ MI   A+NG A EA++++R+  M    +  + V M+ ++Q
Sbjct: 157 DEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQ--MHKKRVEGDGVVMLGLIQ 214

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           AC  L   + G  IHGY++R+ +   + V ++LV MYA+ G LEL  CVF  M  ++V+S
Sbjct: 215 ACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVIS 274

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           W++LIS +  +G+ G A+Q+  +M   G  P  +S VSVL ACS  G ++ GK +     
Sbjct: 275 WSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSV----- 329

Query: 419 KEHMIRPSVEHYAC-----MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
             +++R    H+ C     ++D+  +   L  A  + + +        W +++ S  IH 
Sbjct: 330 HGYIVRRL--HFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSIS-WNAIIASYGIHG 386

Query: 474 NVELAERASKRLFELEPTN 492
           +    E A     ++  TN
Sbjct: 387 S---GEEALSLFLQMRETN 402



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 3/240 (1%)

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
           +IHA ++  G  G  +    LI  YAR G +  A  VF +     V +W+AMI  Y+R G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
             FEAL L+    M S  + P+S T   VL+AC     L  G+      + +G    + V
Sbjct: 85  AMFEALSLYHR--MASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFV 142

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
            +A++ +YA+CGK++    VFD M +RD+V W ++I+    +G   +A+ I+++M    V
Sbjct: 143 GAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRV 202

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
               +  + ++ AC+  G  + G  +   M ++ +I   +   + +VD+  +   LE A+
Sbjct: 203 EGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTS-LVDMYAKNGHLELAS 261


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 256/667 (38%), Positives = 404/667 (60%), Gaps = 59/667 (8%)

Query: 47  LSSRNK---NELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDA 99
           +S RN      +++  C  G+  + + +  +  N    P    +  +  +C+   +    
Sbjct: 71  MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 130

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
            +V+ ++   GF+ +  +   +++++     +D AR  F++   + +++WN +    T  
Sbjct: 131 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 190

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGY 218
           G  ++ L ++R+M     G++ +  T    + AC       SLL+HG+EIH   ++    
Sbjct: 191 GEFKKALNVFRKM--VLEGVKPNSITIASAVSACT----NLSLLRHGREIHGYCIKVEEL 244

Query: 219 NGIVHIMTTLIDMYAR----------FGCV------------MYAGF------------- 243
           +  + +  +L+D YA+          FG +               GF             
Sbjct: 245 DSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFF 304

Query: 244 --------VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
                   VFS+++ ++VV W+++I+  A++G +  AL+L REM + + ++  N+VTMVS
Sbjct: 305 QRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEV--NTVTMVS 362

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
            L AC+ LAAL QGK IH +I+R GLD+   ++++L+ MY RCG ++  + +FD M +RD
Sbjct: 363 ALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD 422

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           +VSWN +IS YG+HG+G  A+ +F++    G+ P+ I+F ++L ACSH+GL+EEG   F+
Sbjct: 423 LVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK 482

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
            M+ E+ + P+VE YACMVDLL RA +  E  + IE +  EP   VWGSLLG+CRIHCN 
Sbjct: 483 MMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNP 542

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           +LAE A++ LFELEP ++GNYVL+A++Y+AA  W++  +++ L++ RG+ K PG S IEV
Sbjct: 543 DLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 602

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
           KRK++SFV  D  HP  EQ+ A + +L  ++KE GYVP T  VL D+D +EKE  + GHS
Sbjct: 603 KRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHS 662

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EK+A+AFGLI+T+ G  +RI KNLR+C DCHS TKFISK   ++I++RD  RFHHF +GV
Sbjct: 663 EKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGV 722

Query: 656 CSCGDYW 662
           CSCGDYW
Sbjct: 723 CSCGDYW 729



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 199/427 (46%), Gaps = 67/427 (15%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P+     Y  +L  C    +L     VH+ L  NG D   FL ++L+ VY     V+DAR
Sbjct: 6   PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDAR 65

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            +FDK   R ++ W A+       G  EE ++L+  M     G+R D F +  V KAC  
Sbjct: 66  RMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLM--VNEGVRPDHFVFPKVFKAC-- 121

Query: 196 SSCGFSLLKH---GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
                S LK+   GK+++  +L  G+ G   +  +++DM+ + G +  A   F ++  K+
Sbjct: 122 -----SELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKD 176

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           V  W+ M++ Y   G   +AL +FR+M++E   + PNS+T+ S + AC  L+ L  G+ I
Sbjct: 177 VFMWNIMVSGYTSKGEFKKALNVFRKMVLEG--VKPNSITIASAVSACTNLSLLRHGREI 234

Query: 313 HGYILR-RGLDSILPVVSALVTMYARCGKLELGQ-------------------------- 345
           HGY ++   LDS L V ++LV  YA+C  +E+ +                          
Sbjct: 235 HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQY 294

Query: 346 -----------------CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
                             VF  +  RDVV WNS+IS+    G    A+ + +EM    V 
Sbjct: 295 GDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVE 354

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH----YACMVDLLGRANKLE 444
            + ++ VS L ACS    + +GK +      + +IR  ++        ++D+ GR   ++
Sbjct: 355 VNTVTMVSALPACSKLAALRQGKEI-----HQFIIRCGLDTCNFILNSLIDMYGRCGSIQ 409

Query: 445 EAAKIIE 451
           ++ +I +
Sbjct: 410 KSRRIFD 416



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           S+LQ C  L  L  G  +H  ++  G+D    + S L+ +Y + G +E  + +FD M +R
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 74

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           +V SW +++  Y   G   + I++F  M+  GV P    F  V  ACS       GK ++
Sbjct: 75  NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 134

Query: 415 ESMRKEHMIRPSVEHYAC----MVDLLGRANKLEEAAKIIEDLRIE 456
                ++M+    E  +C    ++D+  +  +++ A +  E++  +
Sbjct: 135 -----DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 175


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/619 (39%), Positives = 386/619 (62%), Gaps = 10/619 (1%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G+  QAL   S    +  +P + T+   + SC+    L     +H     
Sbjct: 55  NSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFV 114

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+  D F+ + LI++YS    ++DAR +FD+   R +  W ++        R  E + L
Sbjct: 115 FGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFL 174

Query: 169 YRRM----NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE-IHASVLRHGYNGIVH 223
           ++            I         VL  CV S+C    +K   E +H   ++ G+ G + 
Sbjct: 175 FKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLA 234

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           +  TL+D YA+ G +  +  VF  M   +V SW+++IA YA+NG++ EA  LF +M+   
Sbjct: 235 VGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRG 294

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
            ++  N+VT+ +VL ACA   AL+ GK IH  +++  L+  L V +++V MY +CG++E+
Sbjct: 295 -EVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEM 353

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
            +  FD + +++V SW  +++ YG+HG+G +A+++F EMI  G+ P+ I+FVSVL ACSH
Sbjct: 354 ARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSH 413

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
           AGL++EG   F  M+ E  + P +EHY+CMVDLLGRA  L+EA  +I++++++P   VWG
Sbjct: 414 AGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWG 473

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           SLLG+CRIH NVEL E ++++LF+L+P+N G YVLL+++YA A  WD+V+R++ L++  G
Sbjct: 474 SLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHG 533

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
           L K PG S +E K +++ F+  D+ HPQ E+++  L  L+ +++E GY+P    VLYD+D
Sbjct: 534 LLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVD 593

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            EEK  ++  HSEKLAVAFG++N+  G  I+I KNLR+C DCH   K ISK  N+EI++R
Sbjct: 594 VEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIR 653

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D  RFHHF++G+CSCGDYW
Sbjct: 654 DSKRFHHFKDGLCSCGDYW 672



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 2/132 (1%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +V SW+++IA +AR+G + +AL  F    M    L PN  T    +++C++L  L  GK 
Sbjct: 50  SVYSWNSIIADFARSGDSLQALYAFSS--MRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQ 107

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           IH      G  S + V SAL+ MY++CG L   + +FD + +R+VVSW S+IS Y  +  
Sbjct: 108 IHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNER 167

Query: 372 GGKAIQIFKEMI 383
             +A+ +FKE +
Sbjct: 168 AREAVFLFKEFL 179


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 248/574 (43%), Positives = 364/574 (63%), Gaps = 9/574 (1%)

Query: 89   SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
            +C +  SLS    +H       F ++      L+++YS   +++DA   F+K  ++T+  
Sbjct: 663  ACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVS 722

Query: 149  WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
            W +L  A    G  ++ + L+  M   G  +  D ++ T VL AC   +CG SL K G++
Sbjct: 723  WTSLIAAYVREGLYDDAIRLFYEMESKG--VSPDVYSMTSVLHAC---ACGNSLDK-GRD 776

Query: 209  IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
            +H  + ++     + +   L+DMYA+ G +  A  VFSQ+ VK++VSW+ MI  Y++N +
Sbjct: 777  VHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSL 836

Query: 269  AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
              EAL+LF EM  ES    P+ +TM  +L AC +LAALE G+ IHG ILR G  S L V 
Sbjct: 837  PNEALKLFAEMQKESR---PDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVA 893

Query: 329  SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
            +AL+ MY +CG L   + +FD + ++D+++W  +IS  G+HG G +AI  F++M   G+ 
Sbjct: 894  NALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIK 953

Query: 389  PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
            P  I+F S+L ACSH+GL+ EG   F SM  E  + P +EHYACMVDLL R   L +A  
Sbjct: 954  PDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYN 1013

Query: 449  IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
            +IE + I+P   +WG+LL  CRIH +VELAE+ ++ +FELEP NAG YVLLA++YA A+ 
Sbjct: 1014 LIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEK 1073

Query: 509  WDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKE 568
            W+EVK+++  +  RGL+K PG S IEV+ K  +FVS D  HPQ + + +LL NL  +MK 
Sbjct: 1074 WEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKN 1133

Query: 569  KGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSF 628
            +G+ P+ +  L +    EKE  + GHSEKLA+AFG++N   G TIR+ KNLR+C+DCH  
Sbjct: 1134 EGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEM 1193

Query: 629  TKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             KF+SK   +EI++RD NRFHHF++G CSC D+W
Sbjct: 1194 AKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 216/431 (50%), Gaps = 13/431 (3%)

Query: 40  SSTTPTSLSSRNKNELIQSLCKQGNLRQALDVL--SIEPNPTQHTYELLLLSCTHHNSLS 97
           SST   + +  ++N  I   C+ G+LR A+++L  S +     + Y  +L  C  H  L 
Sbjct: 409 SSTRVGAFAKLDENTKICKFCEVGDLRNAVELLRMSQKSELDLNAYSSILQLCAEHKCLQ 468

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT-RRRTIYVWNALFRAL 156
           +   VHS ++ NG   +  L  KL+ +Y    ++ + R +FD       +++WN +    
Sbjct: 469 EGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEY 528

Query: 157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
              G   E + L+++M   G  I  + +T++ +LK C A+      +   K IH  V + 
Sbjct: 529 AKIGDYRESIYLFKKMQKLG--ITGNSYTFSCILK-CFAT---LGRVGECKRIHGCVYKL 582

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
           G+     ++ +LI  Y + G V  A  +F ++  ++VVSW++MI+    NG +  ALE F
Sbjct: 583 GFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFF 642

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
            +M++    +  +  T+V+ + ACA + +L  G+ +HG  ++      +   + L+ MY+
Sbjct: 643 VQMLILRVGV--DLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYS 700

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CG L      F+ M ++ VVSW SLI++Y   G    AI++F EM   GVSP   S  S
Sbjct: 701 KCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTS 760

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           VL AC+    +++G+ +   +RK +M        A M D+  +   +EEA  +   + ++
Sbjct: 761 VLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALM-DMYAKCGSMEEAYLVFSQIPVK 819

Query: 457 PGPKVWGSLLG 467
                W +++G
Sbjct: 820 DIVS-WNTMIG 829



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 16/275 (5%)

Query: 53   NELIQSLCKQGNLRQALDV---LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDN 109
            N +I    K     +AL +   +  E  P   T   LL +C    +L     +H  +  N
Sbjct: 825  NTMIGGYSKNSLPNEALKLFAEMQKESRPDGITMACLLPACGSLAALEIGRGIHGCILRN 884

Query: 110  GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
            G+  +  +   LI++Y    S+  AR +FD    + +  W  +     + G G E +  +
Sbjct: 885  GYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATF 944

Query: 170  RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH-GYNGIVHIMTTL 228
            ++M     GI+ D  T+T +L AC  S     LL  G     S++        +     +
Sbjct: 945  QKMR--IAGIKPDEITFTSILYACSHS----GLLNEGWGFFNSMISECNMEPKLEHYACM 998

Query: 229  IDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
            +D+ AR G +  A  +   M +K +   W A++ C  R     E  E   E + E   L 
Sbjct: 999  VDLLARTGNLSKAYNLIETMPIKPDATIWGALL-CGCRIHHDVELAEKVAEHVFE---LE 1054

Query: 288  PNSVTMVSVLQACAALA-ALEQGKMIHGYILRRGL 321
            P++     +L    A A   E+ K +   I +RGL
Sbjct: 1055 PDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGL 1089


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/588 (40%), Positives = 360/588 (61%), Gaps = 8/588 (1%)

Query: 75   EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
            E  P   T+  +L  C +  +L     +H  +T++G   D  L   LIN+Y    S+ DA
Sbjct: 527  ELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDA 586

Query: 135  RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
            R+VF   + R +  W A+       G   + +EL+ +M   G   R  + T++ +LK C 
Sbjct: 587  RNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEG--FRPVKSTFSSILKVCT 644

Query: 195  ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
            +S+C    L  GK++ A +L  GY     +   LI  Y++ G +  A  VF +M  +++V
Sbjct: 645  SSAC----LDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIV 700

Query: 255  SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
            SW+ +IA YA+NG+   A+E   +M  +  D+ PN  + VS+L AC++ +ALE+GK +H 
Sbjct: 701  SWNKIIAGYAQNGLGQTAVEFAYQM--QEQDVVPNKFSFVSLLNACSSFSALEEGKRVHA 758

Query: 315  YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
             I++R L   + V +AL++MYA+CG     Q VFD++ +++VV+WN++I++Y  HG   K
Sbjct: 759  EIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASK 818

Query: 375  AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
            A+  F  M   G+ P   +F S+L AC+HAGLV EG  +F SM  E+ + P++EHY C+V
Sbjct: 819  ALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLV 878

Query: 435  DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
             LLGRA + +EA  +I  +   P   VW +LLG+CRIH N+ LAE A+    +L   N  
Sbjct: 879  GLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPA 938

Query: 495  NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
             Y+LL++VYAAA  WD+V +++R++E RG++K PGRS IEV   ++ F++ D  HP+  +
Sbjct: 939  VYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAE 998

Query: 555  LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
            ++A L  LS EM+E GY P T+ VL+DL    +E  +  HSE+LA+A+GLI T  G  IR
Sbjct: 999  IYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIR 1058

Query: 615  ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            I KNLR+C DCH+ +KFISK   +EI+ RD NRFH F+NG CSC DYW
Sbjct: 1059 IFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 131/393 (33%), Positives = 201/393 (51%), Gaps = 10/393 (2%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P + TY  LL + T  + L +   +H    + G + D  + T L+ +      VD A+ 
Sbjct: 226 SPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQ 285

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
            F  T  R + V+NAL  AL   G   E  E Y RM   G  +  +R TY  +L AC  S
Sbjct: 286 AFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVAL--NRTTYLSILNACSTS 343

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+ GK IH+ +   G++  V I   LI MYAR G +  A  +F  M  ++++SW
Sbjct: 344 KA----LEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISW 399

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +A+IA YAR     EA+ L+++M  +S  + P  VT + +L ACA  +A   GKMIH  I
Sbjct: 400 NAIIAGYARREDRGEAMRLYKQM--QSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDI 457

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           LR G+ S   + +AL+ MY RCG L   Q VF+    RDV+SWNS+I+ +  HG    A 
Sbjct: 458 LRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAY 517

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           ++F+EM    + P  I+F SVL  C +   +E GK +   +  E  ++  V     ++++
Sbjct: 518 KLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRI-TESGLQLDVNLGNALINM 576

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
             R   L++A  +   L+       W +++G C
Sbjct: 577 YIRCGSLQDARNVFHSLQ-HRDVMSWTAMIGGC 608



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 221/447 (49%), Gaps = 18/447 (4%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI    +QG  ++A  +     N    P + TY  +L +C     L +   +HS +  
Sbjct: 97  NSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIK 156

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+ +DP +   L+++Y     +  AR VF     R +  +N +          +E L L
Sbjct: 157 AGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGL 216

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M  +  GI  D+ TY  +L A    S    +L  GK IH   +  G N  + + T L
Sbjct: 217 FGQM--SSEGISPDKVTYINLLDAFTTPS----MLDEGKRIHKLTVEEGLNSDIRVGTAL 270

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           + M  R G V  A   F   A ++VV ++A+IA  A++G   EA E +  M   S  +  
Sbjct: 271 VTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRM--RSDGVAL 328

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N  T +S+L AC+   ALE GK+IH +I   G  S + + +AL++MYARCG L   + +F
Sbjct: 329 NRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELF 388

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             M KRD++SWN++I+ Y      G+A++++K+M   GV P  ++F+ +L AC+++    
Sbjct: 389 YTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYA 448

Query: 409 EGKMLFESMRKEHMIRPSVEHYA-CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           +GKM+ E + +  +   S  H A  ++++  R   L EA  + E  +       W S++ 
Sbjct: 449 DGKMIHEDILRSGI--KSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS-WNSMIA 505

Query: 468 SCRIHCNVELAERASKRLF--ELEPTN 492
               H + E A +  + +   ELEP N
Sbjct: 506 GHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 185/342 (54%), Gaps = 11/342 (3%)

Query: 75  EPNPTQ---HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV 131
           +P PT+    TY  LL +CT    L +A  +H+ + +     D FL   LIN+Y    SV
Sbjct: 19  QPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSV 78

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
            DA  VF +  RR +  WN+L       G  ++  +L+  M     G   ++ TY  +L 
Sbjct: 79  LDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ--NAGFIPNKITYISILT 136

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           AC +     + L++GK+IH+ +++ GY     +  +L+ MY + G +  A  VF+ ++ +
Sbjct: 137 ACYSP----AELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR 192

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +VVS++ M+  YA+     E L LF +  M S  + P+ VT +++L A    + L++GK 
Sbjct: 193 DVVSYNTMLGLYAQKAYVKECLGLFGQ--MSSEGISPDKVTYINLLDAFTTPSMLDEGKR 250

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           IH   +  GL+S + V +ALVTM  RCG ++  +  F     RDVV +N+LI++   HG+
Sbjct: 251 IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGH 310

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
             +A + +  M   GV+ +  +++S+L ACS +  +E GK++
Sbjct: 311 NVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLI 352



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 119/255 (46%), Gaps = 12/255 (4%)

Query: 277 REMIMESHDLCPNSV---TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
           RE +  +H   P      T V++LQ C     L + K IH  ++   +   + + + L+ 
Sbjct: 11  REDVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLIN 70

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MY +C  +     VF  M +RDV+SWNSLIS Y   G+  KA Q+F+EM   G  P+ I+
Sbjct: 71  MYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKIT 130

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIR-PSVEHYACMVDLLGRANKLEEAAKIIED 452
           ++S+L AC     +E GK +   + K    R P V++   ++ + G+   L  A ++   
Sbjct: 131 YISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQVFAG 188

Query: 453 LRIEPGPKV-WGSLLG--SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
             I P   V + ++LG  + + +    L          + P     Y+ L D +    M 
Sbjct: 189 --ISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKV-TYINLLDAFTTPSML 245

Query: 510 DEVKRVKRLLEARGL 524
           DE KR+ +L    GL
Sbjct: 246 DEGKRIHKLTVEEGL 260


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 250/585 (42%), Positives = 367/585 (62%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P++ TY  +L +C    +L     +H+H+ ++ +  D  + T L  +Y    +  DAR V
Sbjct: 228 PSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREV 287

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+    R +  WN + R    +G+ EE    + RM     G+  DR TYT VL AC A  
Sbjct: 288 FECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRM--LEEGVAPDRATYTTVLSAC-ARP 344

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G   L  GKEIHA   + G    V     LI+MY++ G +  A  VF +M  ++VVSW+
Sbjct: 345 GG---LARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWT 401

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            ++  YA      E+   F++M+ +   +  N +T + VL+AC+   AL+ GK IH  ++
Sbjct: 402 TLLGRYADCDQVVESFTTFKQMLQQG--VKANKITYMCVLKACSNPVALKWGKEIHAEVV 459

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + GL + L V +AL++MY +CG +E    VF+ M  RDVV+WN+LI   G +G G +A+Q
Sbjct: 460 KAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQ 519

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
            ++ M   G+ P+  +FV+VL AC    LVEEG+  F  M K++ I P+ +HYACMVD+L
Sbjct: 520 RYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDIL 579

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            RA  L EA  +I  + ++P   +WG+LL +CRIHCNVE+ ERA++   +LEP NAG YV
Sbjct: 580 ARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYV 639

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
            L+ +YAAA MW +V ++++ ++ RG++K PGRS IE+  +++SFV+ D+ HP+ ++++A
Sbjct: 640 SLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYA 699

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  L  +MK  GYVP T+ V++DLD E KER V  HSEKLA+A+GLI+T  G  IRI+K
Sbjct: 700 ELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISK 759

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH+ TKFISK   +EI+ RD +RFHHF+NG CSCGDYW
Sbjct: 760 NLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 202/394 (51%), Gaps = 14/394 (3%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P    + Y  LL SC     L+    VH H+   G   + ++   L+ +Y+H  SV++AR
Sbjct: 24  PQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEAR 83

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            +FDK   +++  WN +       G  +E   L+  M      +  D+FT+  +L AC +
Sbjct: 84  QLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQ--QERLEPDKFTFVSILSACSS 141

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
                ++L  G+EIH  V+  G      +   LI MYA+ G V  A  VF  MA ++ VS
Sbjct: 142 P----AVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVS 197

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+ +   YA +G   E+L+ +  M+ E   + P+ +T ++VL AC +LAALE+GK IH +
Sbjct: 198 WTTLTGAYAESGYGEESLKTYHAMLQER--VRPSRITYMNVLSACGSLAALEKGKQIHAH 255

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           I+     S + V +AL  MY +CG  +  + VF+ +  RDV++WN++I  +   G   +A
Sbjct: 256 IVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEA 315

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
              F  M+  GV+P   ++ +VL AC+  G +  GK +     K+ ++   V     +++
Sbjct: 316 HGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLV-SDVRFGNALIN 374

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKV--WGSLLG 467
           +  +A  +++A ++ + +   P   V  W +LLG
Sbjct: 375 MYSKAGSMKDARQVFDRM---PKRDVVSWTTLLG 405



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/236 (37%), Positives = 138/236 (58%), Gaps = 6/236 (2%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G + D + Y  +L++CV +      L  GK++H  +LR G    V+I  TL+ +YA  G 
Sbjct: 23  GPQVDSYDYVKLLQSCVKAK----DLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGS 78

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           V  A  +F + + K+VVSW+ MI+ YA  G+A EA  LF   +M+   L P+  T VS+L
Sbjct: 79  VNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLF--TLMQQERLEPDKFTFVSIL 136

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            AC++ A L  G+ IH  ++  GL +   V +AL++MYA+CG +   + VFD M  RD V
Sbjct: 137 SACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEV 196

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           SW +L  +Y   GYG ++++ +  M+   V PS I++++VL AC     +E+GK +
Sbjct: 197 SWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQI 252


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/623 (40%), Positives = 381/623 (61%), Gaps = 44/623 (7%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P+P+  +Y  +    T HN +      H+ +  +G   + FL  K++ +Y+    +D A 
Sbjct: 75  PHPS--SYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAV 132

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEV---LELYRRMNGTGTGIRSDRFTYTYVLKA 192
            VFD+    +  ++N++ RA T  G        LE Y RM+  G  +  D FT  +VLK+
Sbjct: 133 VVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLG--LLGDNFTLPFVLKS 190

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV-------------- 238
           C       S +  G+ +H   LR G  G  ++  +LIDMY + G +              
Sbjct: 191 CA----DLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRD 246

Query: 239 ------MYAGF-----------VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
                 + AG+           +F +M  +N+VSW+AMI+ Y +NG A +AL LF EM+ 
Sbjct: 247 MASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQ 306

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           +  ++ PN VT+VSVL ACA  AALE+G+ IH +    GL     V +AL  MYA+C  L
Sbjct: 307 DGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSL 366

Query: 342 ELGQCVFDHM--DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
              +C FD +  + +++++WN++I++Y  HG G +A+ IF+ M+  GV P  ++F+ +L 
Sbjct: 367 VEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLS 426

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
            CSH+GL++ G   F  M   H + P VEHYAC+VDLLGRA +L EA ++I  + ++ GP
Sbjct: 427 GCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGP 486

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
            VWG+LL +CR H N+E+AE A++RLF LEP N+GNYVLL+++YA A MW+EVK+++ LL
Sbjct: 487 SVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALL 546

Query: 520 EARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579
           + +G++K PG S IE+  K + F+  D+ HPQ ++++  L  L  ++K  GY+P T  VL
Sbjct: 547 KYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVL 606

Query: 580 YDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKE 639
           +D+  EEKE  +  HSEKLA+AFGL+NT  G  +R+TKNLR+C DCH+ TKFISK   +E
Sbjct: 607 HDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYERE 666

Query: 640 ILVRDVNRFHHFRNGVCSCGDYW 662
           I+VRD+NRFH F++G CSCGDYW
Sbjct: 667 IIVRDLNRFHCFKDGSCSCGDYW 689



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 94/238 (39%), Gaps = 15/238 (6%)

Query: 55  LIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           +I    + G   QAL +         E  P   T   +L +C    +L     +H     
Sbjct: 284 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANG 343

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR--RTIYVWNALFRALTLAGRGEEVL 166
            G   +  + T L  +Y+   S+ +AR  FD   +  + +  WN +  A    G G E +
Sbjct: 344 IGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAV 403

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            ++  M     G++ D  T+  +L  C  S    + L H  ++      H     V    
Sbjct: 404 SIFENM--LRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTI---HSVEPRVEHYA 458

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMI-ACYARNGMAFEALELFREMIME 282
            ++D+  R G ++ A  + SQM ++   S W A++ AC +   +    L   R  ++E
Sbjct: 459 CVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLE 516


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/621 (40%), Positives = 384/621 (61%), Gaps = 16/621 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI  L + G+  ++L   S    ++  P + T+   + SC+    L+     H     
Sbjct: 51  NSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALV 110

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF+ D F+ + LI++YS    + +AR +FD+  RR I  W +L           E L +
Sbjct: 111 FGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMV 170

Query: 169 YRRM-------NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
           ++         NG   G   D      VL AC  S      +  G  +H   ++ G + +
Sbjct: 171 FKEFLFEKSEGNGEEVGTSVDSVAMISVLSAC--SRVSNKAVSEG--VHGVAIKVGLDKV 226

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           + +  TL+D YA+ G V  +  VF  MA K+VVSW++MIA YA+NG++ +A E+F  M +
Sbjct: 227 MGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGM-L 285

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           ++     N VT+ ++L ACA   AL  G  +H  +++ G  + + + ++++ MY +CG+ 
Sbjct: 286 KAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQA 345

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           E+ +  FD M +++V SW ++I+ YG+HG+  +A+ +F +MI+ GV P+ I+F+SVL AC
Sbjct: 346 EMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAAC 405

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SHAG +EEG   F +M  E+ + P VEHY CMVDLLGRA  ++EA  +I+ +++     +
Sbjct: 406 SHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVL 465

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           WGSLL +CRIH +VELAE +++ LF+L+P+N G YVLLA++YA A  W +V+R++ L++ 
Sbjct: 466 WGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKD 525

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           RGL K PG S +E+K +++ F+  D+ HPQ E+++  L  LS +++E GYVP    VL+D
Sbjct: 526 RGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHD 585

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           +D EEKE IV  HSEKLAVAFG++N+  G TI + KNLR+C DCH+  K ISK  ++EI+
Sbjct: 586 VDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREII 645

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           VRD  RFHHF++G+CSCGDYW
Sbjct: 646 VRDAKRFHHFKDGLCSCGDYW 666



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 180/345 (52%), Gaps = 17/345 (4%)

Query: 137 VFDKTRRRT-IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
           +F+K   RT +Y WN+L   L   G   E L  +  M      I+ +R T+   +K+C A
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMR--KLDIKPNRSTFPCAIKSCSA 94

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
                  L  GK+ H   L  G+   + + + LIDMY++ G +  A  +F ++  +N+V+
Sbjct: 95  ----LFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVT 150

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHD-------LCPNSVTMVSVLQACAALAALEQ 308
           W+++I  Y +N  A EAL +F+E + E  +          +SV M+SVL AC+ ++    
Sbjct: 151 WTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAV 210

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
            + +HG  ++ GLD ++ V + L+  YA+CG++ L + VFD M ++DVVSWNS+I+ Y  
Sbjct: 211 SEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQ 270

Query: 369 HGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           +G    A ++F  M+  G    + ++  ++L AC+H G +  G  L + + K   +  +V
Sbjct: 271 NGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVN-NV 329

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
                ++D+  +  + E A    + ++ E   + W +++    +H
Sbjct: 330 IMATSIIDMYCKCGQAEMARNAFDGMK-EKNVRSWTAMIAGYGMH 373


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 248/616 (40%), Positives = 387/616 (62%), Gaps = 7/616 (1%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I  L + G+  +AL   S    +   P + T+   + SC+    L      H     
Sbjct: 121 NSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALI 180

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF+ D F+ + L+++YS    + DAR +FD+   R I  W ++             L L
Sbjct: 181 FGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLL 240

Query: 169 YRRMNGTGTGIRSD-RFTYTYVLKACVASSCGFSLLKHGKE-IHASVLRHGYNGIVHIMT 226
           ++      +G   D       +    V S+C     K   E +H  +++ G+ G + +  
Sbjct: 241 FKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVEN 300

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           TL+D YA+ G +  +  VF  MA ++V+SW+++IA YA+NGM+ E++E+F  M+ +  ++
Sbjct: 301 TLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDG-EI 359

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
             N+VT+ +VL ACA   +   GK IH  +++ GL+S + V ++++ MY +CGK+E+ + 
Sbjct: 360 NYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARK 419

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
            FD M +++V SW+++++ YG+HG+  +A+++F EM   GV P+ I+FVSVL ACSHAGL
Sbjct: 420 AFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGL 479

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           +EEG   F++M  E  + P VEHY CMVDLLGRA  L+EA  +I+ +++ P   VWG+LL
Sbjct: 480 LEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALL 539

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+CR+H NV+L E ++++LFEL+P N G YVLL+++YA A  W++V+R++ L++  GL K
Sbjct: 540 GACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVK 599

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S +++K +++ F+  D  HPQ E+++  L  LS +++E GYVP    VL+D+  EE
Sbjct: 600 PPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEE 659

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE ++  HSEKLAVAFG++NT  G TI I KNLR+C DCH+  KFISK  ++EI+VRD  
Sbjct: 660 KEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSK 719

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHFR+G+CSCGDYW
Sbjct: 720 RFHHFRDGLCSCGDYW 735



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 10/159 (6%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           NV SW+++IA  AR+G + EAL  F  M   S  L PN  T    +++C+AL  L  G+ 
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLS--LKPNRSTFPCAIKSCSALLDLHSGRQ 173

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
            H   L  G +  L V SALV MY++CG+L   + +FD +  R++VSW S+I+ Y  +  
Sbjct: 174 AHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDD 233

Query: 372 GGKAIQIFKEMIYH--------GVSPSPISFVSVLGACS 402
             +A+ +FKE +           V   PI+ VSVL ACS
Sbjct: 234 AHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACS 272


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 242/577 (41%), Positives = 365/577 (63%), Gaps = 9/577 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L +C +   +S    VH                 L+++Y+    +D A  VFD    RT
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  W +L  A    G  +E + L+  M+  G  +  D FT T VL AC   +C  SL ++
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREG--VSPDIFTITTVLHAC---ACNGSL-EN 117

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK++H  +  +     + +   L+DMYA+ G +  A  VF +M VK+++SW+ MI  Y++
Sbjct: 118 GKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSK 177

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           N +  EAL LF +M++E   + P+  T+  +L ACA+LA+L++GK +HG+ILR G  S  
Sbjct: 178 NSLPNEALSLFGDMVLE---MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQ 234

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +ALV MY +CG   L + +FD +  +D+++W  +I+ YG+HG+G  AI  F EM   
Sbjct: 235 QVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQA 294

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ P  +SF+S+L ACSH+GL++EG   F  M+ E  ++P +EHYAC+VDLL R+ KL  
Sbjct: 295 GIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAM 354

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A K I+ + IEP   +WG+LL  CRIH +V+LAE+ ++ +FELEP N G YVLLA+ YA 
Sbjct: 355 AYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAE 414

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
           A+ W+EVK++++ +  RGL+K PG S IEVK K++ F++ +  HPQ +++  LL  L ++
Sbjct: 415 AEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSK 474

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           MKE+GY P+T+  L + D+ +KE  + GHSEKLA+AFG++N     TIR++KNLR+C DC
Sbjct: 475 MKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDC 534

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H   KFISK   +EI++RD NRFHHF++GVC C  +W
Sbjct: 535 HEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 139/295 (47%), Gaps = 11/295 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P   T   +L +C  + SL +  +VH+++ +N    + F+   L+++Y+   S++DA  
Sbjct: 96  SPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANS 155

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF +   + I  WN +    +      E L L+  M      ++ D  T   +L AC + 
Sbjct: 156 VFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMV---LEMKPDGTTLACILPACAS- 211

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
               + L  GKE+H  +LR+G+     +   L+DMY + G  + A  +F  +  K++++W
Sbjct: 212 ---LASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITW 268

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + MIA Y  +G    A+  F E  M    + P+ V+ +S+L AC+    L++G      +
Sbjct: 269 TVMIAGYGMHGFGNNAITTFNE--MRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVM 326

Query: 317 LRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
                +   L   + +V + AR GKL +       M  + D   W +L+S   +H
Sbjct: 327 QDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIH 381



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 96/176 (54%), Gaps = 2/176 (1%)

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           MVS+LQACA    +  G+ +HG  ++  +       + L+ MYA+CG L+    VFD M 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
            R VV+W SLI++Y   G   +AI++F EM   GVSP   +  +VL AC+  G +E GK 
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           +   +R+  M + ++     ++D+  +   +E+A  +  ++ ++     W +++G 
Sbjct: 121 VHNYIRENDM-QSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIIS-WNTMIGG 174



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 13/215 (6%)

Query: 53  NELIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDN 109
           N +I    K     +AL +     +E  P   T   +L +C    SL     VH H+  N
Sbjct: 169 NTMIGGYSKNSLPNEALSLFGDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHILRN 228

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           GF  D  +   L+++Y        AR +FD    + +  W  +     + G G   +  +
Sbjct: 229 GFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTF 288

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI--MTT 227
             M     GI  D  ++  +L AC  S     LL  G     +V++   N    +     
Sbjct: 289 NEMR--QAGIEPDEVSFISILYACSHS----GLLDEGWRFF-NVMQDECNVKPKLEHYAC 341

Query: 228 LIDMYARFG-CVMYAGFVFSQMAVKNVVSWSAMIA 261
           ++D+ AR G   M   F+ S     +   W A+++
Sbjct: 342 IVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLS 376


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/593 (42%), Positives = 369/593 (62%), Gaps = 10/593 (1%)

Query: 71  VLSIEPNPTQHTYELLLL-SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
           V S   +P+ H Y   LL SC    +L     +H+ L   G   +  L TKL+N YS  +
Sbjct: 48  VDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCN 107

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           S+ +A H+FDK  +  +++WN L RA    G  E  + LY +M     G++ D FT  +V
Sbjct: 108 SLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQM--LEYGLKPDNFTLPFV 165

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           LKAC A     S +  G+ IH  V+R G+   V +   L+DMYA+ GCV+ A  VF ++ 
Sbjct: 166 LKACSA----LSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIV 221

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            ++ V W++M+A YA+NG   E+L L  EM  +   + P   T+V+V+ + A +A L  G
Sbjct: 222 DRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKG--VRPTEATLVTVISSSADIACLPHG 279

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           + IHG+  R G      V +AL+ MYA+CG +++   +F+ + ++ VVSWN++I+ Y +H
Sbjct: 280 REIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMH 339

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G   +A+ +F+ M+     P  I+FV  L ACS   L++EG+ L+  M ++  I P+VEH
Sbjct: 340 GLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEH 398

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
           Y CMVDLLG   +L+EA  +I  + + P   VWG+LL SC+ H NVELAE A ++L ELE
Sbjct: 399 YTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELE 458

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFH 549
           P ++GNYV+LA++YA +  W+ V R+++L+  +G++K    S IEVK K+Y+F+S D  H
Sbjct: 459 PDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSH 518

Query: 550 PQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSK 609
           P    ++A L  L   M+E GYVP T  V +D++ +EK  +V  HSE+LA+AFGLI+T  
Sbjct: 519 PNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLP 578

Query: 610 GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           G  + ITKNLR+CEDCH   KFISK   +EI VRDVNR+HHFR+G+CSCGDYW
Sbjct: 579 GTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/597 (41%), Positives = 378/597 (63%), Gaps = 10/597 (1%)

Query: 67  QALDVLSIEPNPTQH-TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY 125
           Q   V S  P PT H  Y  LL SC    +L+    +H+     G   +  L TKL+++Y
Sbjct: 33  QTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLY 92

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
           +  +S+ +AR++FDK  ++ +++WN L R     G  +  + LY +M     G+R D FT
Sbjct: 93  AVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKM--LDYGLRPDNFT 150

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
             +VLKAC A     S +  G+ IH  V++ G+   + +   LIDMYA+ GCVM AG VF
Sbjct: 151 LPFVLKACSA----LSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVF 206

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
            ++ V++ V W++M+A YA+NG   E++ L REM   ++ + P   T+V+V+ + A +A 
Sbjct: 207 DKIVVRDAVLWNSMLAAYAQNGHPDESISLCREM--AANGVRPTEATLVTVISSSADVAC 264

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           L  G+ IHG+  R G  S   V +AL+ MYA+CG +++   +F+ + ++ VVSWN++I+ 
Sbjct: 265 LPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITG 324

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           Y +HG    A+ +F +M      P  I+FV VL ACS   L++EG+ L+  M +++ I P
Sbjct: 325 YAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITP 383

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
           +V+HY CM+DLLG   +L+EA  +I ++ ++P   VWG+LL SC+IH NVELAE A ++L
Sbjct: 384 TVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKL 443

Query: 486 FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSV 545
            ELEP ++GNYV+LA++YA +  W+ V+++++++  + ++K    S IEVK K+Y+F++ 
Sbjct: 444 IELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAG 503

Query: 546 DEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLI 605
           D  H   + ++A L  L   M E GY P T  V +D++ +EK  +V  HSE+LA+AFGLI
Sbjct: 504 DVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSERLAIAFGLI 563

Query: 606 NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +TS G  + ITKNLR+CEDCH   KFISK   +EI VRDVNR+H F++G+CSCGD+W
Sbjct: 564 STSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/585 (40%), Positives = 358/585 (61%), Gaps = 8/585 (1%)

Query: 78   PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
            P + T+  +L+ C +  +L     +H  + ++G   D  L   LIN+Y    S+ DA  V
Sbjct: 585  PDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEV 644

Query: 138  FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
            F   R R +  W A+       G   +  EL+ +M   G   +  + T++ +LKAC++S+
Sbjct: 645  FHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDG--FKPVKSTFSSILKACMSSA 702

Query: 198  CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            C    L  GK++ A +L  GY     +   LI  Y++ G +  A  VF +M  ++++SW+
Sbjct: 703  C----LDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWN 758

Query: 258  AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
             MIA YA+NG+   AL+   +M  +   +  N  + VS+L AC++ +ALE+GK +H  I+
Sbjct: 759  KMIAGYAQNGLGGTALQFAYQM--QEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIV 816

Query: 318  RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
            +R +   + V +AL++MYA+CG LE  Q VFD+  +++VV+WN++I++Y  HG   KA+ 
Sbjct: 817  KRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALD 876

Query: 378  IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
             F  M   G+ P   +F S+L AC+H+GLV EG  +F S+  +H + P++EHY C+V LL
Sbjct: 877  FFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLL 936

Query: 438  GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            GRA + +EA  +I  +   P   VW +LLG+CRIH NV LAE A+    +L   N   YV
Sbjct: 937  GRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYV 996

Query: 498  LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
            LL++VYAAA  WD+V +++R++E RG++K PGRS IEV   ++ F++ D  HP+  +++ 
Sbjct: 997  LLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYE 1056

Query: 558  LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
             L  LS EM+  GY P T+ VL++LD E +E  +  HSE+LA+A+GL+ T  G  IRI K
Sbjct: 1057 ELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFK 1116

Query: 618  NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            NLR+C DCH+ +KFISK   +EI+ RD NRFH F+NG CSC D+W
Sbjct: 1117 NLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 127/431 (29%), Positives = 215/431 (49%), Gaps = 16/431 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI    +QG  ++A  +          P++ TY  +L +C     L     +HS + +
Sbjct: 152 NSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIE 211

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+ +DP +   L+N+Y   + +  AR VF    RR +  +N +          EE + L
Sbjct: 212 AGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGL 271

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M  +  GI  D+ TY  +L A    S    +L  GK IH   +  G N  + + T L
Sbjct: 272 FGQM--SSEGIPPDKVTYINLLDAFTTPS----MLDEGKRIHKLAVNEGLNSDIRVGTAL 325

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
             M+ R G V  A       A ++VV ++A+IA  A++G   EA E + +M   S  +  
Sbjct: 326 ATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQM--RSDGVVM 383

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N  T +SVL AC+   AL  G++IH +I   G  S + + ++L++MYARCG L   + +F
Sbjct: 384 NRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELF 443

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + M KRD++SWN++I+ Y      G+A++++K+M   GV P  ++F+ +L AC+++    
Sbjct: 444 NTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYS 503

Query: 409 EGKMLFESMRKEHMIRPSVEHYA-CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           +GKM+ E + +  +   S  H A  ++++  R   + EA  + E  R       W S++ 
Sbjct: 504 DGKMIHEDILRSGI--KSNGHLANALMNMYRRCGSIMEAQNVFEGTRARD-IISWNSMIA 560

Query: 468 SCRIHCNVELA 478
               H + E A
Sbjct: 561 GHAQHGSYEAA 571



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/390 (32%), Positives = 200/390 (51%), Gaps = 10/390 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + TY  LL + T  + L +   +H    + G + D  + T L  ++     V  A+  
Sbjct: 282 PDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQA 341

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
            +    R + V+NAL  AL   G  EE  E Y +M   G  +  +R TY  VL AC  S 
Sbjct: 342 LEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDG--VVMNRTTYLSVLNACSTSK 399

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  G+ IH+ +   G++  V I  +LI MYAR G +  A  +F+ M  ++++SW+
Sbjct: 400 A----LGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWN 455

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           A+IA YAR     EA++L+++M  +S  + P  VT + +L AC   +A   GKMIH  IL
Sbjct: 456 AIIAGYARREDRGEAMKLYKQM--QSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDIL 513

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R G+ S   + +AL+ MY RCG +   Q VF+    RD++SWNS+I+ +  HG    A +
Sbjct: 514 RSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYK 573

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F EM   G+ P  I+F SVL  C +   +E G+ +   +  E  ++  V     ++++ 
Sbjct: 574 LFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQI-HMLIIESGLQLDVNLGNALINMY 632

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
            R   L++A ++   LR       W +++G
Sbjct: 633 IRCGSLQDAYEVFHSLR-HRNVMSWTAMIG 661



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 187/363 (51%), Gaps = 12/363 (3%)

Query: 53  NELIQSLCKQGNLRQALD----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI +L + G+  +A +    + S      + TY  +L +C+   +L     +HSH+++
Sbjct: 354 NALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISE 413

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   D  +   LI++Y+    +  AR +F+   +R +  WNA+           E ++L
Sbjct: 414 VGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKL 473

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           Y++M   G  ++  R T+ ++L AC  SS        GK IH  +LR G     H+   L
Sbjct: 474 YKQMQSEG--VKPGRVTFLHLLSACTNSSA----YSDGKMIHEDILRSGIKSNGHLANAL 527

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           ++MY R G +M A  VF     ++++SW++MIA +A++G    A +LF EM  E   L P
Sbjct: 528 MNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEG--LEP 585

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + +T  SVL  C    ALE G+ IH  I+  GL   + + +AL+ MY RCG L+    VF
Sbjct: 586 DKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVF 645

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             +  R+V+SW ++I  +   G   KA ++F +M   G  P   +F S+L AC  +  ++
Sbjct: 646 HSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLD 705

Query: 409 EGK 411
           EGK
Sbjct: 706 EGK 708



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 182/342 (53%), Gaps = 11/342 (3%)

Query: 75  EPNPTQHT---YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV 131
           +P PT+     Y  L+ +CT   SL++A  +H+ + + G   D FL   LIN+Y    SV
Sbjct: 74  QPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSV 133

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
            DA  VF K  RR +  WN+L       G  ++  +L+  M     G    + TY  +L 
Sbjct: 134 SDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ--TAGFIPSKITYISILT 191

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           AC    C  + L++GK+IH+ ++  GY     +  +L++MY +   +  A  VFS +  +
Sbjct: 192 AC----CSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRR 247

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +VVS++ M+  YA+     E + LF +  M S  + P+ VT +++L A    + L++GK 
Sbjct: 248 DVVSYNTMLGLYAQKAYVEECIGLFGQ--MSSEGIPPDKVTYINLLDAFTTPSMLDEGKR 305

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           IH   +  GL+S + V +AL TM+ RCG +   +   +    RDVV +N+LI++   HG+
Sbjct: 306 IHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGH 365

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
             +A + + +M   GV  +  +++SVL ACS +  +  G+++
Sbjct: 366 YEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELI 407



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 13/242 (5%)

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N    V ++Q C    +L + K IH  ++  G+   + + + L+ MY +C  +     VF
Sbjct: 81  NRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVF 140

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             M +RDV+SWNSLIS Y   G+  KA Q+F+EM   G  PS I+++S+L AC     +E
Sbjct: 141 LKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELE 200

Query: 409 EGKMLFESMRKEHMIR-PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
            GK +   + +    R P V++   ++++ G+   L  A ++   +        + ++LG
Sbjct: 201 YGKKIHSKIIEAGYQRDPRVQN--SLLNMYGKCEDLPSARQVFSGI-YRRDVVSYNTMLG 257

Query: 468 SCRIHCNVE-----LAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
                  VE       + +S+ +    P +   Y+ L D +    M DE KR+ +L    
Sbjct: 258 LYAQKAYVEECIGLFGQMSSEGI----PPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNE 313

Query: 523 GL 524
           GL
Sbjct: 314 GL 315


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 245/611 (40%), Positives = 381/611 (62%), Gaps = 8/611 (1%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N +I   C+ GN ++AL + +        T   LL +CT     +  + +HS+   +G +
Sbjct: 220 NAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE 279

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            + F+  KLI++Y+ F  + D + VFD+   R +  WN++ +A  L  +    + L++ M
Sbjct: 280 SELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM 339

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN-GIVHIMTTLIDM 231
             +    R      T +  A + S  G   ++  + +    LR G+    + I   ++ M
Sbjct: 340 RLS----RIQPDCLTLISLASILSQLGD--IRACRSVQGFTLRKGWFLEDITIGNAVVVM 393

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           YA+ G V  A  VF+ +   +V+SW+ +I+ YA+NG A EA+E++  ++ E  ++  N  
Sbjct: 394 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMY-NIMEEEGEIAANQG 452

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T VSVL AC+   AL QG  +HG +L+ GL   + VV++L  MY +CG+LE    +F  +
Sbjct: 453 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 512

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
            + + V WN+LI+ +G HG+G KA+ +FKEM+  GV P  I+FV++L ACSH+GLV+EG+
Sbjct: 513 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQ 572

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
             FE M+ ++ I PS++HY CMVD+ GRA +LE A K I+ + ++P   +WG+LL +CR+
Sbjct: 573 WCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRV 632

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H NV+L + AS+ LFE+EP + G +VLL+++YA+A  W+ V  ++ +   +GL+K PG S
Sbjct: 633 HGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWS 692

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            +EV  K+  F + ++ HP +E+++  L  L A++K  GYVP  + VL D++ +EKE I+
Sbjct: 693 SMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHIL 752

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
           + HSE+LA+AF LI T    TIRI KNLR+C DCHS TKFISK   +EI+VRD NRFHHF
Sbjct: 753 MSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHF 812

Query: 652 RNGVCSCGDYW 662
           +NGVCSCGDYW
Sbjct: 813 KNGVCSCGDYW 823



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 181/353 (51%), Gaps = 34/353 (9%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           +Q   K GN  + +D +        HT   L   CT+   L  A  +H+ L  +   Q+ 
Sbjct: 41  LQDCWKNGNESKEIDDV--------HT---LFRYCTN---LQSAKCLHARLVVSKQIQNV 86

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
            +  KL+N+Y +  +V  ARH FD  + R +Y WN +      AG   EV+  +  +   
Sbjct: 87  CISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFS-LFML 145

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
            +G+  D  T+  VLKAC         +  G +IH   L+ G+   V++  +LI +Y+R+
Sbjct: 146 SSGLTPDYRTFPSVLKAC-------RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRY 198

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL---FREMIMESHDLCPNSVT 292
             V  A  +F +M V+++ SW+AMI+ Y ++G A EAL L    R M         +SVT
Sbjct: 199 KAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM---------DSVT 249

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           +VS+L AC       +G  IH Y ++ GL+S L V + L+ +YA  G+L   Q VFD M 
Sbjct: 250 VVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMY 309

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            RD++SWNS+I +Y ++    +AI +F+EM    + P  ++ +S+    S  G
Sbjct: 310 VRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 250/614 (40%), Positives = 371/614 (60%), Gaps = 13/614 (2%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I      G   + LD+    L +  N    T   ++  C++   L     +H +   
Sbjct: 220 NSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIK 279

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
             F ++  L   L+++YS   +++ A  VF+    R++  W ++       G  +  + L
Sbjct: 280 ASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRL 339

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M   G  I  D FT T +L AC  +     LL++GK++H  +  +     + +   L
Sbjct: 340 FHEMEKEG--ISPDIFTITTILHACACTG----LLENGKDVHNYIKENKMQSDLFVSNAL 393

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +DMYA+ G +  A  VFS+M VK++VSW+ MI  Y++N +  EAL LF EM   S    P
Sbjct: 394 MDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSK---P 450

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           NS+TM  +L ACA+LAALE+G+ IHG+ILR G      V +ALV MY +CG L L + +F
Sbjct: 451 NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLF 510

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D + ++D+VSW  +I+ YG+HGYG +AI  F EM   G+ P  +SF+S+L ACSH+GL++
Sbjct: 511 DMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLD 570

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG   F  MR    I P  EHYAC+VDLL RA  L +A K I+ + IEP   +WG+LL  
Sbjct: 571 EGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCG 630

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRI+ +V+LAE+ ++ +FELEP N G YVLLA++YA A+ W+EVK+++  +  RGL+K P
Sbjct: 631 CRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNP 690

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S IE+K K++ FV+ D  HP   ++  LL      MKE+G+ P+ +  L   D  EKE
Sbjct: 691 GCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKE 750

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             + GHSEK+A+AFG+++   G+T+R+TKNLR+C DCH   KF+SK   ++I++RD NRF
Sbjct: 751 MALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRF 810

Query: 649 HHFRNGVCSCGDYW 662
           HHF++G CSC  +W
Sbjct: 811 HHFKDGSCSCRGHW 824



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 136/477 (28%), Positives = 216/477 (45%), Gaps = 76/477 (15%)

Query: 4   LQSPQTPQLLRSPYHT----NSIAH----LPPKPSSVC---------CCVSLNSSTTPTS 46
           L S  TP L  SP H     NS+ +    +  +PSS            C ++ +S  P+ 
Sbjct: 3   LISKTTPNLWVSPPHQIHRENSLTYPNGFIFFRPSSKTPLVSSNLYHSCATIGTSVLPSE 62

Query: 47  LSS---RNKNELIQSLCKQGNLRQALDVLSIEPNPTQH--TYELLLLSCTHHNSLSDALN 101
                  + N  I   C+ GNLR+A+++++  P P     TY  +L  C    S+ D   
Sbjct: 63  TIDCKITDYNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRR 122

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +HS +  N  + D  L +KL+ +Y     + + R +FDK     +++WN L       G 
Sbjct: 123 IHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGN 182

Query: 162 GEEVLELYRRMNGTGT-------------------------------------------- 177
             E L L++RM   G                                             
Sbjct: 183 FRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQM 242

Query: 178 ---GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
              GI +D  T   V+  C  S+ G  LL  G+ +H   ++  +   + +   L+DMY++
Sbjct: 243 LLLGINTDLATMVSVVAGC--SNTGMLLL--GRALHGYAIKASFGKELTLNNCLLDMYSK 298

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A  VF  M  ++VVSW++MIA YAR G++  ++ LF E  ME   + P+  T+ 
Sbjct: 299 SGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE--MEKEGISPDIFTIT 356

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           ++L ACA    LE GK +H YI    + S L V +AL+ MYA+CG +     VF  M  +
Sbjct: 357 TILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK 416

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           D+VSWN++I  Y  +    +A+ +F EM Y+   P+ I+   +L AC+    +E G+
Sbjct: 417 DIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERGQ 472



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 50/211 (23%)

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD-- 349
           T  SVLQ CA L +++ G+ IH  I    ++    + S LV MY  CG L  G+ +FD  
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 350 -----------------------------------------------HMDKRDVVSWNSL 362
                                                           +  RDV+SWNS+
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           IS Y  +G   K + +F++M+  G++    + VSV+  CS+ G++  G+ L     K   
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASF 282

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            +  +    C++D+  ++  L  A ++ E +
Sbjct: 283 GK-ELTLNNCLLDMYSKSGNLNSAIQVFETM 312


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/599 (40%), Positives = 364/599 (60%), Gaps = 43/599 (7%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           ++S  L +H+ L  +G D  P L  KL   Y+    +D +  +F +T+  +++ W A+  
Sbjct: 42  TISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIH 101

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
              L G  E+ L  Y +M     G+  + FT++ +LK C         ++ GK +H+  +
Sbjct: 102 GHALRGLHEQALNFYAQM--LTQGVEPNAFTFSSILKLCP--------IEPGKALHSQAV 151

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR--------- 265
           + G++  +++ T L+D+YAR G V+ A  +F  M  K++VS +AM+ CYA+         
Sbjct: 152 KLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARV 211

Query: 266 ----------------------NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
                                 NGM  EAL LFR M+       PN VT++SVL AC  L
Sbjct: 212 LFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK--PNEVTVLSVLSACGQL 269

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
            ALE G+ +H YI   G+   + V +ALV MY++CG LE  + VFD +D +DVV+WNS+I
Sbjct: 270 GALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMI 329

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
             Y +HG+  +A+Q+FK M   G+ P+ I+F+ +L AC H+G V EG  +F  M+ E+ I
Sbjct: 330 VGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGI 389

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
            P +EHY CMV+LLGRA  +E+A ++++++ IEP P +WG+LLG+CR+H  + L E+  +
Sbjct: 390 EPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVE 449

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
            L +    N+G Y+LL+++YAA   WD V R++ +++  G++K PG S IEV  K++ F+
Sbjct: 450 LLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFL 509

Query: 544 SVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFG 603
           +    HP+ ++++ +L  ++  +K  GY PQT +VL+D+   EKER +  HSEKLA+AFG
Sbjct: 510 AGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFG 569

Query: 604 LINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           LINT  G TI+I KNLR+C DCH  TK ISK   ++I+VRD NRFHHF NG CSCGDYW
Sbjct: 570 LINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 45/264 (17%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G   +AL     +L  +  P + T   +L +C    +L     VHS++ +
Sbjct: 225 NVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIEN 284

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           NG   +  + T L+++YS   S++DAR VFDK   + +  WN++     + G  +E L+L
Sbjct: 285 NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQL 344

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           ++ M     G+     T+  +L AC                H+  +  G++    I   +
Sbjct: 345 FKSM--CRMGLHPTNITFIGILSACG---------------HSGWVTEGWD----IFNKM 383

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
            D Y                    +  +  M+    R G   +A EL + M +E     P
Sbjct: 384 KDEYG---------------IEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIE-----P 423

Query: 289 NSVTMVSVLQACAALAALEQGKMI 312
           + V   ++L AC     +  G+ I
Sbjct: 424 DPVLWGTLLGACRLHGKIALGEKI 447


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/639 (38%), Positives = 395/639 (61%), Gaps = 12/639 (1%)

Query: 28   KPSSVCCCVSLNSSTTPTSLSSRNKNEL-IQSLCKQGNLRQALDVLSIEPNPTQ-HTYEL 85
            +P  V   +S   S     LS+   N   +++LC    L++AL  + I+    +   Y+ 
Sbjct: 423  RPKQVLSSISNPFSRQRILLSTFPANSPDLKTLCSNRQLKEALLEMGIQGLEVEFQGYDS 482

Query: 86   LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
            +L  C    ++ +   VH+H+    ++   +L T+LI +Y+    + DAR V D+   R 
Sbjct: 483  VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 542

Query: 146  IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
            +  W A+    +  G   E L L+  M  +GT    + FT+  VL +C +SS GF L   
Sbjct: 543  VVSWTAMISGYSQRGYASEALHLFVEMLMSGTA--PNEFTFATVLTSCTSSS-GFQL--- 596

Query: 206  GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
            G++IH+ V++  +   + + ++L+DMYA+ G +  A  VF  +  ++VVS +A+I+ YA+
Sbjct: 597  GRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQ 656

Query: 266  NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
             G+  EAL+LFR +  E   +  N VT  SVL A + LAAL+ G+ +H ++LR  L   +
Sbjct: 657  LGLDEEALDLFRRLQREG--MRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYV 714

Query: 326  PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
             + ++L+ MY++CG L   + +FD M +R V+SWN+++  Y  HG G +A+++FK M   
Sbjct: 715  VLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEE 774

Query: 386  G-VSPSPISFVSVLGACSHAGLVEEG-KMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
              V P  ++F++VL  CSH G+ + G ++ +E + ++    P +EHY C+VDL GRA ++
Sbjct: 775  NKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRV 834

Query: 444  EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
            EEA + I+ +  EP   +WGSLLG+CR+H NV + E  ++RL E+E  NAGNYV+L+++Y
Sbjct: 835  EEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLY 894

Query: 504  AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
            A+A  WD+V+ V+ L++ + + K PGRS IE+ + +++F + D  HP+ E++ A +  LS
Sbjct: 895  ASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELS 954

Query: 564  AEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCE 623
             ++KE GYVP+   VLYD+D E+KE+I+ GHSEKLA+AFGLI T  G  +RI KNLR+C 
Sbjct: 955  IKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICV 1014

Query: 624  DCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            DCH+F KF+S+   +E+ +RD NRFHH   G CSCGDYW
Sbjct: 1015 DCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/566 (42%), Positives = 375/566 (66%), Gaps = 10/566 (1%)

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALT 157
           + + +H++   NG D D  +   L+++Y+ F S+     +FDK   + +  W  +     
Sbjct: 437 NGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHA 496

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
             G     LEL+R +   G  I  D    + +L AC     G  L+   KEIH+ ++R G
Sbjct: 497 QNGSHSRALELFREVQLEG--IDLDVMMISSILLAC----SGLKLISSVKEIHSYIIRKG 550

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
            + +V +   ++D+Y   G V YA  +F  +  K+VVSW++MI+CY  NG+A EALELF 
Sbjct: 551 LSDLV-LQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFH 609

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
             +M+   + P+S+++VS+L A A+L+AL++GK IHG+++R+G      + S LV MYAR
Sbjct: 610 --LMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYAR 667

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           CG LE  + VF+ +  +D+V W S+I++YG+HG G  AI +F+ M    ++P  I+FV+V
Sbjct: 668 CGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAV 727

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           L ACSH+GL+ EG+   ESM+ E+ + P  EHY C+VDLLGRAN LEEA + ++ + +EP
Sbjct: 728 LYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEP 787

Query: 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
             +VW +LLG+C+IH N EL E A+++L E++P N GNYVL+++VYAA   W +V+ V+ 
Sbjct: 788 TAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRM 847

Query: 518 LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM-KEKGYVPQTK 576
            ++A GL+K PG S IEV  K+++F++ D+ HPQ  ++++ L  ++ ++ KE GYV QTK
Sbjct: 848 RMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTK 907

Query: 577 VVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFA 636
            VL++   EEK +++ GHSE+LA+A+G++ T +G ++RITKNLR+C DCH+F K ISKF 
Sbjct: 908 FVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFF 967

Query: 637 NKEILVRDVNRFHHFRNGVCSCGDYW 662
            +E+++RD NRFHHF+ GVCSCGD W
Sbjct: 968 ERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 194/362 (53%), Gaps = 23/362 (6%)

Query: 56  IQSLCKQGNLRQALDVLS---IEPNPTQHT----YELLLLSCTHHNSLSDALNVHSHL-T 107
           ++ +CK+G++ +A   L+      +P+Q +    Y  +L  C    +LS+   VH+H+ T
Sbjct: 83  LREICKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMIT 142

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            N      FL T+L+ +Y     + DA  +FD    +TI+ WNA+  A    G     LE
Sbjct: 143 SNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLE 202

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH---GKEIHASVLRHGYNGIVHI 224
           LYR M  +G  I  D  T+  +LKAC        LLK    G E+H   ++ GY  IV +
Sbjct: 203 LYREMRVSG--IPLDACTFPCILKAC-------GLLKDRRCGAEVHGLAIKEGYVSIVFV 253

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMIACYARNGMAFEALELFREMIMES 283
             +++ MY +   +  A  +F +M  K +VVSW++MI+ Y+ NG + EAL LF EM  + 
Sbjct: 254 ANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEM--QK 311

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
             L PN+ T V+ LQAC   + ++QG  IH  +L+      + V +AL+ MYAR GK+  
Sbjct: 312 ASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGE 371

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              +F +MD  D +SWNS++S +  +G   +A+Q + EM   G  P  ++ +S++ A + 
Sbjct: 372 AANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASAR 431

Query: 404 AG 405
           +G
Sbjct: 432 SG 433



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 200/397 (50%), Gaps = 23/397 (5%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+  +L +C           VH      G+    F+   ++ +Y+  + ++ AR +FD+ 
Sbjct: 218 TFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRM 277

Query: 142 -RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
             +  +  WN++  A +  G+  E L L+  M      +  + +T+   L+AC  SS   
Sbjct: 278 PEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKAS--LAPNTYTFVAALQACEDSS--- 332

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             +K G  IHA+VL+  Y   V +   LI MYARFG +  A  +F  M   + +SW++M+
Sbjct: 333 -FIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSML 391

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           + + +NG+  EAL+ + EM        P+ V ++S++ A A       G  IH Y ++ G
Sbjct: 392 SGFVQNGLYHEALQFYHEMRDAGQK--PDLVAVISIIAASARSGNTLNGMQIHAYAMKNG 449

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           LDS L V ++LV MYA+   ++   C+FD M  +DVVSW ++I+ +  +G   +A+++F+
Sbjct: 450 LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFR 509

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH--MIRPSVEHYAC---MVD 435
           E+   G+    +   S+L ACS       G  L  S+++ H  +IR  +        +VD
Sbjct: 510 EVQLEGIDLDVMMISSILLACS-------GLKLISSVKEIHSYIIRKGLSDLVLQNGIVD 562

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           + G    ++ AA++ E +  +     W S++ SC +H
Sbjct: 563 VYGECGNVDYAARMFELIEFKDVVS-WTSMI-SCYVH 597


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/647 (38%), Positives = 383/647 (59%), Gaps = 41/647 (6%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I++L   G   +AL + S    I   P  +T+  ++ +C        A ++H  + D
Sbjct: 84  NSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLD 143

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF  D ++   LI++Y  F+ +D AR VF++   R +  WN+L       G   E LE+
Sbjct: 144 MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEI 203

Query: 169 Y----RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
           Y    +         + D  T T +L+AC         L+ GK +H  ++  GY      
Sbjct: 204 YYQSIKLFMEMVNQFKPDLLTITSILQAC----GHLGDLEFGKYVHDYMITSGYECDTTA 259

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI---- 280
              LI+MYA+ G ++ +  VFS M  K+ VSW++MI  Y +NG   ++L++F  M     
Sbjct: 260 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDI 319

Query: 281 -------------------------MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
                                    M +  + P+  TM+S+L  C+ LAA  QGK IHG 
Sbjct: 320 ITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGC 379

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           I + GL+S +PV + L+ MY++CG L     VF  M  +DVV+W +LIS+ G++G G KA
Sbjct: 380 IFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKA 439

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           ++ F EM   G+ P  ++FV+++ ACSH+GLVEEG   F  M+K++ I P +EHYAC+VD
Sbjct: 440 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 499

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495
           LL R+  L++A   I  + ++P   +WG+LL +CR+  + E+AER S+R+ EL P + G 
Sbjct: 500 LLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGY 559

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           YVL++++YAA   WD+V+ +++ ++ARGL+K PG S +E++ K+Y F +  +F  QFE++
Sbjct: 560 YVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEV 619

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
           + LL  L+  M ++GY+   + VL+D+D +EK  I+ GHSE+LA+AFGL+NT  G  +++
Sbjct: 620 NKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQV 679

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+CEDCH+ TK+ISK   +E+LVRD NRFH F++G CSCGDYW
Sbjct: 680 MKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 211/437 (48%), Gaps = 34/437 (7%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD-KTRRRTIYVWNALFRALTLAG 160
           +HS +   G         KLI  Y+HF     +  VF   +    +Y+WN++ RALT  G
Sbjct: 35  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNG 94

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
              E L LY         ++ D +T+  V+ AC     G    +  K IH  VL  G+  
Sbjct: 95  LFSEALSLYSETQRIR--LQPDTYTFPSVINACA----GLLDFEMAKSIHDRVLDMGFGS 148

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE------ 274
            ++I   LIDMY RF  +  A  VF +M +++VVSW+++I+ Y  NG   EALE      
Sbjct: 149 DLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSI 208

Query: 275 -LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
            LF EM+   +   P+ +T+ S+LQAC  L  LE GK +H Y++  G +      + L+ 
Sbjct: 209 KLFMEMV---NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILIN 265

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MYA+CG L   Q VF  M  +D VSWNS+I+ Y  +G  G ++++F+ M    +    I+
Sbjct: 266 MYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDI----IT 321

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV---DLLGRANKLEEAAKII 450
           + +++ +C H+     G  +   MR E  + P +     ++    LL    + +E    I
Sbjct: 322 WNTIIASCVHSEDCNLGLRMISRMRTEG-VTPDMATMLSILPVCSLLAAKRQGKEIHGCI 380

Query: 451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWD 510
             L +E    V G++L      C    + R S ++F+L  T   + V    + +A  M+ 
Sbjct: 381 FKLGLESDVPV-GNVLIEMYSKCG---SLRNSFQVFKLMKTK--DVVTWTALISACGMYG 434

Query: 511 EVKRVKRL---LEARGL 524
           E K+  R    +EA G+
Sbjct: 435 EGKKAVRAFGEMEAAGI 451



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 113/218 (51%), Gaps = 11/218 (5%)

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA-VKNVVSWSAMIACYARN 266
           ++H+ ++  G +  V     LI  YA F     +  VF   +   NV  W+++I     N
Sbjct: 34  KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHN 93

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           G+  EAL L+ E   +   L P++ T  SV+ ACA L   E  K IH  +L  G  S L 
Sbjct: 94  GLFSEALSLYSET--QRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLY 151

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI-------F 379
           + +AL+ MY R   L+  + VF+ M  RDVVSWNSLIS Y  +GY  +A++I       F
Sbjct: 152 IGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLF 211

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
            EM+ +   P  ++  S+L AC H G +E GK + + M
Sbjct: 212 MEMV-NQFKPDLLTITSILQACGHLGDLEFGKYVHDYM 248


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/565 (43%), Positives = 375/565 (66%), Gaps = 10/565 (1%)

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            + +H++   NG D D  +   L+++Y+ F S+     +FDK   + +  W  +      
Sbjct: 402 GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ 461

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G     LEL+R +   G  I  D    + +L AC     G  L+   KEIH+ ++R G 
Sbjct: 462 NGSHSRALELFREVQLEG--IDLDVMMISSILLAC----SGLKLISSVKEIHSYIIRKGL 515

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
           + +V +   ++D+Y   G V YA  +F  +  K+VVSW++MI+CY  NG+A EALELF  
Sbjct: 516 SDLV-LQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFH- 573

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
            +M+   + P+S+++VS+L A A+L+AL++GK IHG+++R+G      + S LV MYARC
Sbjct: 574 -LMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARC 632

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G LE  + VF+ +  +D+V W S+I++YG+HG G  AI +F+ M    ++P  I+FV+VL
Sbjct: 633 GTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVL 692

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSH+GL+ EG+   ESM+ E+ + P  EHYAC+VDLLGRAN LEEA + ++ + +EP 
Sbjct: 693 YACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPT 752

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
            +VW +LLG+C+IH N EL E A+++L E++P N GNYVL+++VY+A   W +V+ V+  
Sbjct: 753 AEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMR 812

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM-KEKGYVPQTKV 577
           ++A GL+K PG S IEV  K+++F++ D+ HPQ  ++++ L  ++ ++ KE GYV QTK 
Sbjct: 813 MKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKF 872

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           VL++   EEK +++ GHSE+LA+A+G++ T +G ++RITKNLR+C DCH+F K ISKF  
Sbjct: 873 VLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFE 932

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +E+++RD NRFHHF+ GVCSCGD W
Sbjct: 933 RELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 195/362 (53%), Gaps = 23/362 (6%)

Query: 56  IQSLCKQGNLRQALDVLS---IEPNPTQHT----YELLLLSCTHHNSLSDALNVHSHL-T 107
           ++ +CK+G++ +A   L+      +P+Q +    Y  +L  C    +LS+   VH+H+ T
Sbjct: 47  LREICKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMIT 106

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            N      FL T+L+ +Y     + DA  +FD    +TI+ WNA+  A    G     LE
Sbjct: 107 SNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLE 166

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK---HGKEIHASVLRHGYNGIVHI 224
           LYR M  +G  I  D  T+  +LKAC        LLK   +G E+H   ++ GY  IV +
Sbjct: 167 LYREMRVSG--IPLDACTFPCILKAC-------GLLKDRRYGAEVHGLAIKEGYVSIVFV 217

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMIACYARNGMAFEALELFREMIMES 283
             +++ MY +   +  A  +F +M  K +VVSW++MI+ Y+ NG + EAL LF EM  + 
Sbjct: 218 ANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEM--QK 275

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
             L PN+ T V+ LQAC   + ++QG  IH  +L+      + V +AL+ MYAR GK+  
Sbjct: 276 ASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGE 335

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              +F +MD  D +SWNS++S +  +G   +A+Q + EM   G  P  ++ +S++ A + 
Sbjct: 336 AANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASAR 395

Query: 404 AG 405
           +G
Sbjct: 396 SG 397



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 200/397 (50%), Gaps = 23/397 (5%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+  +L +C           VH      G+    F+   ++ +Y+  + ++ AR +FD+ 
Sbjct: 182 TFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRM 241

Query: 142 -RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
             +  +  WN++  A +  G+  E L L+  M      +  + +T+   L+AC  SS   
Sbjct: 242 PEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKAS--LAPNTYTFVAALQACEDSS--- 296

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             +K G  IHA+VL+  Y   V +   LI MYARFG +  A  +F  M   + +SW++M+
Sbjct: 297 -FIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSML 355

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           + + +NG+  EAL+ + EM        P+ V ++S++ A A       G  IH Y ++ G
Sbjct: 356 SGFVQNGLYHEALQFYHEMRDAGQK--PDLVAVISIIAASARSGNTLHGMQIHAYAMKNG 413

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           LDS L V ++LV MYA+   ++   C+FD M  +DVVSW ++I+ +  +G   +A+++F+
Sbjct: 414 LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFR 473

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH--MIRPSVEHYAC---MVD 435
           E+   G+    +   S+L ACS       G  L  S+++ H  +IR  +        +VD
Sbjct: 474 EVQLEGIDLDVMMISSILLACS-------GLKLISSVKEIHSYIIRKGLSDLVLQNGIVD 526

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           + G    ++ AA++ E +  +     W S++ SC +H
Sbjct: 527 VYGECGNVDYAARMFELIEFKDVVS-WTSMI-SCYVH 561


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 253/615 (41%), Positives = 384/615 (62%), Gaps = 13/615 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS---IEP-NPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I  L + GN  QALDVL    +E  N    T   +L  C     +S A  +H ++  
Sbjct: 242 NAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIK 301

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +G + + F+   LIN+Y+ F ++ DA+ VF +   R +  WN++  A             
Sbjct: 302 HGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGF 361

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY-NGIVHIMTT 227
           + +M   G  +  D  T    L +  A S  +   K+ + +H  ++R G+    V I   
Sbjct: 362 FFKMQLNG--LEPDLLTLV-SLASIAAQSRDY---KNSRSVHGFIMRRGWLMEAVVIGNA 415

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           ++DMYA+ G +  A  VF+ + VK+VVSW+ +I+ Y +NG+A EA+E++R M+ E  ++ 
Sbjct: 416 VMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYR-MMEECREIK 474

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
            N  T VS+L A A + AL+QG  IHG++++  L   + V + L+ +Y +CG+L    C+
Sbjct: 475 LNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCL 534

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F  + +   V WN++IS +G+HG+G KA+++F+EM   GV P  ++F+S+L ACSH+GLV
Sbjct: 535 FYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLV 594

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           +EGK  F  M +E+ I+PS++HY CMVDLLGRA  LE A   I+D+ + P   +WG+LLG
Sbjct: 595 DEGKWFFHLM-QEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLG 653

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           +CRIH N+EL + AS RLFE++  N G YVLL+++YA    W+ V +V+ L   RGL+K 
Sbjct: 654 ACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKT 713

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           PG S IEV R++  F + ++ HP+ ++++A L  L+A+MK  GY+P    VL D++ +EK
Sbjct: 714 PGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEK 773

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
           E I+  HSE+LA+AFG+I+T     IRI KNLR+C DCH+ TKFIS+   +EI+VRD  R
Sbjct: 774 EHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKR 833

Query: 648 FHHFRNGVCSCGDYW 662
           FHHF+NG+CSCGDYW
Sbjct: 834 FHHFKNGICSCGDYW 848



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 140/524 (26%), Positives = 250/524 (47%), Gaps = 31/524 (5%)

Query: 53  NELIQSLCKQGNLRQALD-----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N +I +  + G+ R+A+D     +L  +     +T+  +L +C    +L D   +H  + 
Sbjct: 143 NSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC---QTLVDGRKIHCWVF 199

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
             GF  D F+   LI++YS F  V  AR +FD    R +  WNA+   L   G   + L+
Sbjct: 200 KLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 259

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           +   M     GI  D  T   +L  C         +     IH  V++HG    + +   
Sbjct: 260 VLDEMR--LEGINMDSVTVASILPVCAQ----LGDISTATLIHLYVIKHGLEFELFVSNA 313

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           LI+MYA+FG +  A  VF QM +++VVSW+++IA Y +N     A   F +M +    L 
Sbjct: 314 LINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNG--LE 371

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRG-LDSILPVVSALVTMYARCGKLELGQC 346
           P+ +T+VS+    A     +  + +HG+I+RRG L   + + +A++ MYA+ G ++    
Sbjct: 372 PDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHK 431

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY-HGVSPSPISFVSVLGACSHAG 405
           VF+ +  +DVVSWN+LIS Y  +G   +AI++++ M     +  +  ++VS+L A +H G
Sbjct: 432 VFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVG 491

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
            +++G  +   + K ++    V    C++DL G+  +L +A  +   +  E     W ++
Sbjct: 492 ALQQGMRIHGHLIKTNL-HLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVP-WNAI 549

Query: 466 LGSCRIHCNVELAERASKRLFE--LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           +    IH + E A +  + + +  ++P +   ++ L    + + + DE K    L++  G
Sbjct: 550 ISCHGIHGHGEKALKLFREMQDEGVKPDHV-TFISLLSACSHSGLVDEGKWFFHLMQEYG 608

Query: 524 LQK--------VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           ++         V    R       Y F+     HP      ALL
Sbjct: 609 IKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALL 652



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 192/364 (52%), Gaps = 17/364 (4%)

Query: 94  NSLSD-------ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI 146
           NSL D       A  +H+ L  +G  Q  F+  +L+N+Y+    V  +R  FD+ +R+ +
Sbjct: 80  NSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDV 139

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206
           Y WN++  A    G   E ++ + ++    T  ++D +T+  VLKAC         L  G
Sbjct: 140 YTWNSMISAYVRNGHFREAIDCFYQLLLV-TKFQADFYTFPPVLKAC-------QTLVDG 191

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           ++IH  V + G+   V +  +LI MY+RFG V  A  +F  M  +++ SW+AMI+   +N
Sbjct: 192 RKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQN 251

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           G A +AL++  EM +E  ++  +SVT+ S+L  CA L  +    +IH Y+++ GL+  L 
Sbjct: 252 GNAAQALDVLDEMRLEGINM--DSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELF 309

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           V +AL+ MYA+ G L   Q VF  M  RDVVSWNS+I++Y  +     A   F +M  +G
Sbjct: 310 VSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNG 369

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           + P  ++ VS+    + +   +  + +   + +   +  +V     ++D+  +   ++ A
Sbjct: 370 LEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSA 429

Query: 447 AKII 450
            K+ 
Sbjct: 430 HKVF 433



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 132/258 (51%), Gaps = 7/258 (2%)

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
            SC  +LL   K +HA ++  G      I   L+++YA  G V  +   F Q+  K+V +
Sbjct: 84  DSCTKTLL--AKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYT 141

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W++MI+ Y RNG   EA++ F ++++ +     +  T   VL+AC  L     G+ IH +
Sbjct: 142 WNSMISAYVRNGHFREAIDCFYQLLLVTK-FQADFYTFPPVLKACQTLV---DGRKIHCW 197

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           + + G    + V ++L+ MY+R G + + + +FD M  RD+ SWN++IS    +G   +A
Sbjct: 198 VFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQA 257

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           + +  EM   G++   ++  S+L  C+  G +    ++   + K H +   +     +++
Sbjct: 258 LDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIK-HGLEFELFVSNALIN 316

Query: 436 LLGRANKLEEAAKIIEDL 453
           +  +   L +A K+ + +
Sbjct: 317 MYAKFGNLGDAQKVFQQM 334


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/611 (40%), Positives = 378/611 (61%), Gaps = 7/611 (1%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N +I   C+ GN ++AL +          T   LL +CT     +  + +HS+   +G +
Sbjct: 220 NAMISGYCQSGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE 279

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            + F+  KLI++Y+ F S+ D + VFD+   R +  WN++ +A  L  +    + L++ M
Sbjct: 280 SELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEM 339

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN-GIVHIMTTLIDM 231
             +    R      T +  A + S  G   ++  + +    LR G+    + I   ++ M
Sbjct: 340 RLS----RIQPDCLTLISLASILSQLG--EIRACRSVQGFTLRKGWFLEDITIGNAVVVM 393

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           YA+ G V  A  VF+ +  K+V+SW+ +I+ YA+NG A EA+E++  M  E  ++  N  
Sbjct: 394 YAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQG 453

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T VSVL AC+   AL QG  +HG +L+ GL   + V ++L  MY +CG+L+    +F  +
Sbjct: 454 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQI 513

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
            + + V WN+LI+ +G HG+G KA+ +FKEM+  GV P  I+FV++L ACSH+GLV+EG+
Sbjct: 514 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGE 573

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
             FE M+ ++ I PS++HY CMVDL GRA +LE A   I+ + ++P   +WG+LL +CR+
Sbjct: 574 WCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRV 633

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H NV+L + AS+ LFE+EP + G +VLL+++YA+A  W+ V  ++ +   +GL+K PG S
Sbjct: 634 HGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWS 693

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            +EV  K+  F + ++ HP +E+++  L  L  ++K  GYVP  + VL D++ +EKE I+
Sbjct: 694 SMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHIL 753

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
           + HSE+LA+AF LI T    TIRI KNLR+C DCHS TKFISK   +EI+VRD NRFHHF
Sbjct: 754 MSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHF 813

Query: 652 RNGVCSCGDYW 662
           +NGVCSCGDYW
Sbjct: 814 KNGVCSCGDYW 824



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/353 (32%), Positives = 181/353 (51%), Gaps = 34/353 (9%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           +Q   K GN  + +D +        HT   L   CT+   L  A  +H+ L  +   Q+ 
Sbjct: 41  LQDCWKNGNESKEIDDV--------HT---LFRYCTN---LQSAKCLHARLVVSNAIQNV 86

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
            +  KL+N+Y +  +V  AR+ FD    R +Y WN +      AG   EV+  +  +   
Sbjct: 87  CISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFS-LFML 145

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
            +G++ D  T+  VLKAC         +  G +IH   L+ G+   V++  +LI +Y R+
Sbjct: 146 SSGLQPDYRTFPSVLKACRN-------VTDGNKIHCLALKFGFMWDVYVAASLIHLYCRY 198

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL---FREMIMESHDLCPNSVT 292
           G V+ A  +F +M  +++ SW+AMI+ Y ++G A EAL L    R M         +SVT
Sbjct: 199 GAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAM---------DSVT 249

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           +VS+L AC       +G  IH Y ++ GL+S L V + L+ +YA  G L+  Q VFD M 
Sbjct: 250 VVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMY 309

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            RD++SWNS+I +Y ++    +AI +F+EM    + P  ++ +S+    S  G
Sbjct: 310 VRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLG 362


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/590 (42%), Positives = 365/590 (61%), Gaps = 11/590 (1%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           +L +E + T  T   +L++C +  +LS    +H       F ++      L+++YS   +
Sbjct: 289 ILGVEVDLT--TLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGN 346

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           ++ A  VF K    TI  W ++  A    G   + + L+  M   G  +R D +T T ++
Sbjct: 347 LNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKG--VRPDIYTVTSIV 404

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
            AC  SS     L  G+++H+ V+++G    + +   LI+MYA+ G V  A  VFS++ V
Sbjct: 405 HACACSSS----LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV 460

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           K++VSW+ MI  Y++N +  EALELF +M        P+ +TM  VL ACA LAAL++G+
Sbjct: 461 KDIVSWNTMIGGYSQNLLPNEALELFLDM---QKQFKPDDITMACVLPACAGLAALDKGR 517

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            IHG+ILRRG  S L V  ALV MYA+CG L L Q +FD + K+D++SW  +I+ YG+HG
Sbjct: 518 EIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHG 577

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
           +G +AI  F EM   G+ P   SF ++L ACSH+GL+ EG   F SMR E  + P +EHY
Sbjct: 578 FGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHY 637

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
           AC+VDLL R   L +A K IE + I+P   +WG LL  CRIH +V+LAE+ ++ +FELEP
Sbjct: 638 ACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEP 697

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
            N   YV+LA+VYA A+ W+EVK++++ ++ RG ++ PG S IEV  K   FV+ +  HP
Sbjct: 698 DNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHP 757

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           Q +++  LL  L+ +M+ + Y    + VL + D  EKE I  GHSEK A+AFG++N   G
Sbjct: 758 QAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPG 817

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
            T+R++KN R+C DCH   KF+SK    EI++RD NRFHHF++G+CSC D
Sbjct: 818 RTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 232/478 (48%), Gaps = 39/478 (8%)

Query: 13  LRSPYHTNSIAH-----------LPPKPSSVC-----CCVSLNSSTTPTSLSSRNKNELI 56
           + SPYHT+                  +P   C      CVS + + T  S++ +N+N  I
Sbjct: 10  ISSPYHTHKTTSNYAKKSHNRFIFFKQPRRTCLLHSTVCVSPSFTNTTHSVT-QNQNAKI 68

Query: 57  QSLCKQGNLRQALDVLSIEPNPTQHTYELLLLS-------CTHHNSLSDALNVHSHLTDN 109
              C+ G+LR A+++L+        +YEL L S       C    SL D   VHS +  N
Sbjct: 69  NKFCEMGDLRNAIELLT-----KSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISN 123

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           G   D  L  KL+ +Y +   +   R +FDK     +++WN L       G   E + L+
Sbjct: 124 GISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLF 183

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           ++M     G+  + +T+T VLK C A+      +K  K +H  VL+ G+     ++ +LI
Sbjct: 184 KKMQ--KLGVVGNCYTFTCVLK-CFAA---LGKVKECKRVHGYVLKLGFGSNTAVVNSLI 237

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
             Y +FG V  A  +F +++  +VVSW++MI     NG +   LE+F +M++   ++  +
Sbjct: 238 AAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEV--D 295

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
             T+VSVL ACA +  L  G+ +HG+ ++      +   + L+ MY++CG L     VF 
Sbjct: 296 LTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFV 355

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
            M    +VSW S+I++Y   G    AI +F EM   GV P   +  S++ AC+ +  +++
Sbjct: 356 KMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDK 415

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           G+ +   + K  M   ++     ++++  +   +EEA  +   + ++     W +++G
Sbjct: 416 GRDVHSYVIKNGM-GSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS-WNTMIG 471


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/578 (41%), Positives = 362/578 (62%), Gaps = 10/578 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSH-LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR 144
           + ++C +  +L     +HS+ +     D++      L+++YS    ++ A  VF++   +
Sbjct: 358 VFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEK 417

Query: 145 TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK 204
           T+  W ++       G  +  ++L+  M   G  +  D +  T +L AC  +      LK
Sbjct: 418 TVVSWTSMITGYVREGLSDGAIKLFDEMKSRG--VVPDVYAVTSILNACAINGN----LK 471

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
            GK +H  +  +       +   L DMYA+ G +  A  VFS M  K+V+SW+ MI  Y 
Sbjct: 472 SGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYT 531

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           +N +  EAL LF EM  ES    P+  T+  +L ACA+LAAL++G+ IHGY LR G    
Sbjct: 532 KNSLPNEALTLFAEMQRESK---PDGTTVACILPACASLAALDKGREIHGYALRNGYSED 588

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
             V +A+V MY +CG L L + +FD +  +D+VSW  +I+ YG+HGYG +AI  F +M  
Sbjct: 589 KYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRM 648

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            G+ P  +SF+S+L ACSH+GL++EG  +F  M+KE  I P++EHYACMVDLL R   L 
Sbjct: 649 TGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLV 708

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
           +A K I+ + I+P   +WG+LL  CRIH +V+LAE+ ++R+FELEP N G YVLLA++YA
Sbjct: 709 KAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYA 768

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
            A+ W+EV+++++ +  RGL+K PG S IE+K K+  FV+ D   PQ +++  LL  L +
Sbjct: 769 EAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRS 828

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           +MKE+GY P+T   L + D  EKE  + GHSEKLA+AFG++N   G+TIR+TKNLR+C D
Sbjct: 829 KMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGD 888

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH   KF+SK A++EI++RD +RFHHF++G CSC  YW
Sbjct: 889 CHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 233/458 (50%), Gaps = 25/458 (5%)

Query: 13  LRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVL 72
           L S    +S+A+ P   +     V L+SS              I   C+ G+L+ A+++L
Sbjct: 93  LFSKLSFSSLAYAPALETKSYMDVELDSSRK------------IVEFCEVGDLKNAMELL 140

Query: 73  --SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
             S   N     Y  +L  C    S+ D   V S +  +G   D  L  KL+ +Y     
Sbjct: 141 CSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGD 200

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           + + R VFDK     I++WN +    + +G   E + L+++M     GI+ + +T++ +L
Sbjct: 201 LKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQM--LELGIKPNSYTFSSIL 258

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
           K C A+    + ++ G+++H  + + G+N    ++ +LI  Y     V  A  +F ++  
Sbjct: 259 K-CFAA---VARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTD 314

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           ++V+SW++MI+ Y +NG+    +E+F +M++   D+  +  TMV+V  ACA +  L  GK
Sbjct: 315 RDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDI--DLATMVNVFVACANIGTLLLGK 372

Query: 311 MIHGYILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           ++H Y ++   LD  +   + L+ MY++CG L     VF+ MD++ VVSW S+I+ Y   
Sbjct: 373 VLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVRE 432

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G    AI++F EM   GV P   +  S+L AC+  G ++ GK++ + +R+ ++   S   
Sbjct: 433 GLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVS 492

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
            A + D+  +   +++A  +   ++ +     W +++G
Sbjct: 493 NA-LTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMIG 528



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 32/200 (16%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E  P   T   +L +C    +L     +H +   NG+ +D ++   ++++Y     +  A
Sbjct: 549 ESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLA 608

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R +FD    + +  W  +     + G G E +  + +M    TGI  D  ++  +L AC 
Sbjct: 609 RSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMR--MTGIEPDEVSFISILYACS 666

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT-------------LIDMYARFGCVMYA 241
                          H+ +L  G+  I +IM               ++D+ AR G ++ A
Sbjct: 667 ---------------HSGLLDEGWK-IFNIMKKECQIEPNLEHYACMVDLLARTGNLVKA 710

Query: 242 GFVFSQMAVK-NVVSWSAMI 260
                 M +K +   W A++
Sbjct: 711 HKFIKAMPIKPDATIWGALL 730


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/585 (41%), Positives = 364/585 (62%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  + +  +L SCT    L    +VH  +   G D D +    L+N+YS    +D  R V
Sbjct: 103 PDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKV 162

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+   R+ +  +N +      +G  E+ L + R M GT + ++ D FT + VL      S
Sbjct: 163 FELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREM-GT-SDLKPDAFTLSSVLPIF---S 217

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
               +LK GKEIH  V+R G +  V+I ++L+DMYA+   +  +  VFS +  ++ +SW+
Sbjct: 218 EYVDVLK-GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWN 276

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           +++A Y +NG   EAL LFR+M+  S  + P +V   SV+ ACA LA L  GK +HGY+L
Sbjct: 277 SLVAGYVQNGRYNEALRLFRQMV--SAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVL 334

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R G    + + SALV MY++CG ++  + +FD M+  D VSW ++I  + +HG+G +A+ 
Sbjct: 335 RGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVS 394

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F+EM   GV P+ ++FV+VL ACSH GLV+E    F SM K + +   +EHYA + DLL
Sbjct: 395 LFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLL 454

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA KLEEA   I  +R+EP   VW +LL SC +H N+ELAE+ ++++F ++  N G YV
Sbjct: 455 GRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYV 514

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           L+ ++YA+   W E+ +++  +  +GL+K P  S IE+K K + FVS D  HP  ++++ 
Sbjct: 515 LMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINE 574

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  +  +M+++GYV  T  VL+D+D E K  ++ GHSE+LAVAFG+INT  G TIR+TK
Sbjct: 575 FLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTK 634

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           N+R+C DCH   KFISK   +EI+VRD +RFHHF  G CSCGDYW
Sbjct: 635 NIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 182/335 (54%), Gaps = 9/335 (2%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           +I++Y++   + +A  VF       +  W ++ R  T        L  +  M  +G    
Sbjct: 45  VISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRC-- 102

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D   +  VLK+C         L+ G+ +H  ++R G +  ++    L++MY++   +  
Sbjct: 103 PDHNVFPSVLKSCTM----MMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDS 158

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
              VF  M  K+VVS++ +IA YA++GM  +AL + RE  M + DL P++ T+ SVL   
Sbjct: 159 VRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVRE--MGTSDLKPDAFTLSSVLPIF 216

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           +    + +GK IHGY++R+G+DS + + S+LV MYA+  ++E  + VF H+ +RD +SWN
Sbjct: 217 SEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWN 276

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           SL++ Y  +G   +A+++F++M+   V P  ++F SV+ AC+H   +  GK L   + + 
Sbjct: 277 SLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG 336

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
              R ++   + +VD+  +   ++ A KI + + +
Sbjct: 337 GFGR-NIFIASALVDMYSKCGNIQAARKIFDRMNL 370



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 155/318 (48%), Gaps = 16/318 (5%)

Query: 57  QSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPF 116
           QS   +  LR   ++ + +  P   T   +L   + +  +     +H ++   G D D +
Sbjct: 183 QSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVY 242

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           + + L+++Y+    ++D+  VF    RR    WN+L       GR  E L L+R+M    
Sbjct: 243 IGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQM--VS 300

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
             +R     ++ V+ AC       + L  GK++H  VLR G+   + I + L+DMY++ G
Sbjct: 301 AKVRPGAVAFSSVIPACAH----LATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCG 356

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            +  A  +F +M + + VSW+A+I  +A +G   EA+ LF E  M+   + PN V  V+V
Sbjct: 357 NIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEE--MKRQGVKPNQVAFVAV 414

Query: 297 LQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           L AC+ +  +++       + +  GL+  L   +A+  +  R GKLE     +D + K  
Sbjct: 415 LTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEA---YDFISKMR 471

Query: 356 VVS----WNSLISSYGVH 369
           V      W++L+SS  VH
Sbjct: 472 VEPTGSVWSTLLSSCSVH 489



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 127/250 (50%), Gaps = 6/250 (2%)

Query: 205 HGKEIHASVLRHGYNGIVHIMTTL-IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
             K++HA  +R     + H   ++ I +Y     +  A  VF  +    V++W ++I C+
Sbjct: 23  QAKQLHAQFIR--TQSLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCF 80

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
               +   AL  F EM   +   CP+     SVL++C  +  L  G+ +HG+I+R G+D 
Sbjct: 81  TDQSLFSRALASFVEM--RASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDC 138

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            L   +AL+ MY++   ++  + VF+ M ++DVVS+N++I+ Y   G    A+++ +EM 
Sbjct: 139 DLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMG 198

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
              + P   +  SVL   S    V +GK +   + ++  I   V   + +VD+  ++ ++
Sbjct: 199 TSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKG-IDSDVYIGSSLVDMYAKSARI 257

Query: 444 EEAAKIIEDL 453
           E++ ++   L
Sbjct: 258 EDSERVFSHL 267



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 12/215 (5%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+    + G   +AL     ++S +  P    +  ++ +C H  +L     +H ++  
Sbjct: 276 NSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 335

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF ++ F+ + L+++YS   ++  AR +FD+        W A+     L G G E + L
Sbjct: 336 GGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSL 395

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTT 227
           +  M     G++ ++  +  VL AC  S  G  L+        S+ + +G N  +     
Sbjct: 396 FEEMK--RQGVKPNQVAFVAVLTAC--SHVG--LVDEAWGYFNSMTKVYGLNQELEHYAA 449

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMIA 261
           + D+  R G +  A    S+M V+   S WS +++
Sbjct: 450 VADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLS 484


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/562 (41%), Positives = 357/562 (63%), Gaps = 9/562 (1%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            VH+H+  NG  QD  +  KL+  Y+   ++DDA  +FD    R    W+ +      AG
Sbjct: 21  QVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAG 80

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
                   +R +     G+  D +T  +V++ C   +     L+ G+ IH  VL+HG   
Sbjct: 81  DHAGCYATFREL--LRCGVTPDNYTLPFVIRTCRDRTD----LQIGRVIHDVVLKHGLLS 134

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
              +  +L+DMYA+   V  A  +F +M  K++V+W+ MI  YA +  A+E+L LF  M 
Sbjct: 135 DHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMR 193

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
            E   + P+ V MV+V+ ACA L A+ + +  + YI+R G    + + +A++ MYA+CG 
Sbjct: 194 EEG--VVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGS 251

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +E  + VFD M +++V+SW+++I++YG HG G  AI +F  M+   + P+ ++FVS+L A
Sbjct: 252 VESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYA 311

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
           CSHAGL+EEG   F SM +EH +RP V+HY CMVDLLGRA +L+EA ++IE + +E   +
Sbjct: 312 CSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDER 371

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
           +W +LLG+CRIH  +ELAE+A+  L EL+P N G+YVLL+++YA A  W++V + + ++ 
Sbjct: 372 LWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMT 431

Query: 521 ARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY 580
            R L+K+PG + IEV  K Y F   D  HPQ ++++ +L++L  +++  GYVP T  VL 
Sbjct: 432 QRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQ 491

Query: 581 DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEI 640
           D++ E K+ ++  HSEKLA+AFGLI   +GE IRI+KNLR+C DCH+F+K +S    + I
Sbjct: 492 DVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSI 551

Query: 641 LVRDVNRFHHFRNGVCSCGDYW 662
           +VRD NRFHHF +G CSCGDYW
Sbjct: 552 IVRDANRFHHFNDGTCSCGDYW 573



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 147/304 (48%), Gaps = 15/304 (4%)

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
           ++L     P  +T   ++ +C     L     +H  +  +G   D F+   L+++Y+   
Sbjct: 91  ELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCI 150

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
            V+DA+ +F++   + +  W  +  A        E L L+ RM     G+  D+     V
Sbjct: 151 VVEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYESLVLFDRMR--EEGVVPDKVAMVTV 207

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           + AC         +   +  +  ++R+G++  V + T +IDMYA+ G V  A  VF +M 
Sbjct: 208 VNACAK----LGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMK 263

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            KNV+SWSAMIA Y  +G   +A++LF  M+  S  + PN VT VS+L AC+    +E+G
Sbjct: 264 EKNVISWSAMIAAYGYHGRGKDAIDLFHMML--SCAILPNRVTFVSLLYACSHAGLIEEG 321

Query: 310 KMIHGYILRRGLDSILPVV---SALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISS 365
                 +      ++ P V   + +V +  R G+L+    + + M  ++D   W++L+ +
Sbjct: 322 LRFFNSMWEE--HAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGA 379

Query: 366 YGVH 369
             +H
Sbjct: 380 CRIH 383


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/590 (40%), Positives = 367/590 (62%), Gaps = 12/590 (2%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           I+P+P   T   L+ +C    +L     +H ++   G   D  ++T  +++YS    ++ 
Sbjct: 227 IKPSPITMTS--LIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIES 284

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR VF K   R +  WNA+       G   E  +L+ R+  +  G   D  T   +L+ C
Sbjct: 285 ARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGF--DLTTIVSLLQGC 342

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
             ++     L  GK +H   +R   + ++ + T ++D+Y++ G +  A FVF++M  +NV
Sbjct: 343 SQTAS----LATGKILHGCAIRSFESNLI-LSTAIVDLYSKCGSLKQATFVFNRMKDRNV 397

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           ++W+AM+   A+NG A +AL LF +M  +   +  NSVT VS++ +CA L +L++G+ IH
Sbjct: 398 ITWTAMLVGLAQNGHAEDALRLFAQM--QEEGIAANSVTFVSLVHSCAHLGSLKRGRSIH 455

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYG 372
           G++ R G    +  ++ALV MYA+CGK+ L + +F H    +DVV WNS+I+ YG+HG+G
Sbjct: 456 GHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHG 515

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +A+ I+ +MI  G+ P+  +F+S+L ACSH+ LVE+G  LF SM ++H IRP  +HYAC
Sbjct: 516 YQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYAC 575

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
           +VDLL RA + EEA  +IE +  +PG  V  +LL  CR H N+ L  + S +L  L+  N
Sbjct: 576 LVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMN 635

Query: 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQF 552
            G Y++L+++YA A  WD+V  ++ L+  RGL+K PG S +E    +++F + D  HP +
Sbjct: 636 PGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNW 695

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
           E+++  L +L + ++  GYVP T  VL D+D E K R++ GHSE+LA+AFGL+ T  G  
Sbjct: 696 EEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSL 755

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IRITKNLR+C DCH+ TK+ISK   +EI+VRD NRFHHF NG CSCGDYW
Sbjct: 756 IRITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 223/430 (51%), Gaps = 26/430 (6%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N ++    + G  R+ L++       ++E +    T+ L   +C         + + S  
Sbjct: 99  NAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALK--ACASSLDYEMGMEIISSA 156

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
            + G +++ F+ + +I+    F  + +A+ VFD    + +  WN++      AG  +   
Sbjct: 157 VEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAF 216

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +L+  M+  G+GI+    T T +++AC     G   LK GK +H  VL  G    + ++T
Sbjct: 217 QLFFEMH--GSGIKPSPITMTSLIQAC----GGIGNLKLGKCMHGYVLGLGLGNDILVLT 270

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           + +DMY++ G +  A +VF +M  +N+VSW+AMI+   RNG+  E+ +LF  ++  S   
Sbjct: 271 SFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGF 330

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
             +  T+VS+LQ C+  A+L  GK++HG  + R  +S L + +A+V +Y++CG L+    
Sbjct: 331 --DLTTIVSLLQGCSQTASLATGKILHGCAI-RSFESNLILSTAIVDLYSKCGSLKQATF 387

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF+ M  R+V++W +++     +G+   A+++F +M   G++ + ++FVS++ +C+H G 
Sbjct: 388 VFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGS 447

Query: 407 VEEGKMLFESMRKEHMIRPS----VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
           ++ G+ +       H+ R      + +   +VD+  +  K+  A +I     I     +W
Sbjct: 448 LKRGRSI-----HGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLW 502

Query: 463 GSLLGSCRIH 472
            S++    +H
Sbjct: 503 NSMITGYGMH 512



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 180/354 (50%), Gaps = 10/354 (2%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           + H+ +  N    D F+ TKL+  YS   S++ AR+VFD+  +    + NA+      +G
Sbjct: 50  STHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSG 109

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
           R  E LEL+  M      +  D  + T+ LKAC ASS  + +   G EI +S +  G   
Sbjct: 110 RYRETLELFGLMRSRN--LEVDSCSCTFALKAC-ASSLDYEM---GMEIISSAVEKGMEK 163

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
              + +++I    +FG +  A  VF  M  K+VV W+++I  Y + G    A +LF EM 
Sbjct: 164 NRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEM- 222

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
                + P+ +TM S++QAC  +  L+ GK +HGY+L  GL + + V+++ V MY++ G 
Sbjct: 223 -HGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGD 281

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +E  + VF  M  R++VSWN++IS    +G  G++  +F  ++         + VS+L  
Sbjct: 282 IESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQG 341

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           CS    +  GK+L     +      ++     +VDL  +   L++A  +   ++
Sbjct: 342 CSQTASLATGKILHGCAIRS--FESNLILSTAIVDLYSKCGSLKQATFVFNRMK 393



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 2/207 (0%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           K  HA ++ +  +    + T L+  Y+    +  A +VF Q      +  +AM+  Y ++
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           G   E LELF   +M S +L  +S +    L+ACA+    E G  I    + +G++    
Sbjct: 109 GRYRETLELFG--LMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRF 166

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           V S++++   + GK+   Q VFD M  +DVV WNS+I  Y   G    A Q+F EM   G
Sbjct: 167 VGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSG 226

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKML 413
           + PSPI+  S++ AC   G ++ GK +
Sbjct: 227 IKPSPITMTSLIQACGGIGNLKLGKCM 253


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/589 (39%), Positives = 371/589 (62%), Gaps = 11/589 (1%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           IEPN    T+  +L +C+  ++L     +  H+ + G+  D  + T L+++Y+   S+ D
Sbjct: 409 IEPNRV--TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKD 466

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  VF+K  ++ +  WNA+  A     + +  L  ++ +     GI+ +  T+T +L  C
Sbjct: 467 AHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL--LKEGIKPNSSTFTSILNVC 524

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
            +S      L+ GK +H  +++ G    +H+   L+ M+   G +M A  +F+ M  +++
Sbjct: 525 KSSDS----LELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDL 580

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+ +IA + ++G    A + F+  +M+   + P+ +T   +L ACA+  AL +G+ +H
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFK--MMQESGIKPDKITFTGLLNACASPEALTEGRRLH 638

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             I     D  + V + L++MY +CG +E    VF  + K++V SW S+I+ Y  HG G 
Sbjct: 639 ALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGK 698

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A+++F +M   GV P  I+FV  L AC+HAGL+EEG   F+SM KE  I P +EHY CM
Sbjct: 699 EALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCM 757

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDL GRA  L EA + I  +++EP  +VWG+LLG+C++H NVELAE+A+++  EL+P + 
Sbjct: 758 VDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDN 817

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           G +V+L+++YAAA MW EV ++++++  RG+ K PG+S IEV  K+++F S D+ HPQ E
Sbjct: 818 GVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTE 877

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           ++HA L  L  EM++ GYVP T+ VL+D++  EKE+ +  HSE+LA+ +GL+ T     I
Sbjct: 878 EIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPI 937

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            I+KNLR+C DCH+ TKFISK   ++I+ RD NRFHHF++GVCSCGD+W
Sbjct: 938 VISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 250/488 (51%), Gaps = 25/488 (5%)

Query: 48  SSRNKNELIQSLCKQGNLRQALDVLS-IEPNPTQ---HTYELLLLSCTHHNSLSDALNVH 103
            ++  N ++  L K G   +A+ VL  ++ +  Q    TY  LL  C    +L D   ++
Sbjct: 74  DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 104 SHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE 163
           +H+  +G   D F+   LIN+Y+   +   A+ +FD  R + +Y WN L       G  E
Sbjct: 134 NHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           E  +L+ +M      ++ D+ T+  +L AC  +      +  G+E++  +L+ G++  + 
Sbjct: 194 EAFKLHEQM--VQDSVKPDKRTFVSMLNACADARN----VDKGRELYNLILKAGWDTDLF 247

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           + T LI+M+ + G +  A  VF  +  +++V+W++MI   AR+G   +A  LF+ M  E 
Sbjct: 248 VGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRM--EE 305

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
             + P+ V  VS+L+AC    ALEQGK +H  +   G D+ + V +A+++MY +CG +E 
Sbjct: 306 EGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMED 365

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              VFD +  R+VVSW ++I+ +  HG   +A   F +MI  G+ P+ ++F+S+LGACS 
Sbjct: 366 ALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSS 425

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEH----YACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
              ++ G+ +     ++H+I             ++ +  +   L++A ++ E +  +   
Sbjct: 426 PSALKRGQQI-----QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNV 479

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFE--LEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
             W +++ +   H   + A    + L +  ++P N+  +  + +V  ++D  +  K V  
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCKSSDSLELGKWVHF 538

Query: 518 LLEARGLQ 525
           L+   GL+
Sbjct: 539 LIMKAGLE 546


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/619 (40%), Positives = 382/619 (61%), Gaps = 21/619 (3%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I  L + GN  QALDVL       I+ N    T   +L  C     +S A+ +H ++
Sbjct: 285 NAMISGLIQNGNAAQALDVLDEMRLEGIKMNFV--TVVSILPVCPQLGDISTAMLIHLYV 342

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             +G + D F+   LIN+Y+ F +++DAR  F +     +  WN++  A           
Sbjct: 343 IKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAH 402

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASS--CGFSLLKHGKEIHASVLRHGY-NGIVH 223
             + +M   G   + D  T    L + VA S  C     K+ + +H  ++R G+    V 
Sbjct: 403 GFFVKMQLNG--FQPDLLTLV-SLASIVAQSRDC-----KNSRSVHGFIMRRGWLMEDVV 454

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           I   ++DMYA+ G +  A  VF  + VK+V+SW+ +I  YA+NG+A EA+E+++ M+ E 
Sbjct: 455 IGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYK-MMEEC 513

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
            ++ PN  T VS+L A A + AL+QG  IHG +++  L   + V + L+ +Y +CG+L  
Sbjct: 514 KEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVD 573

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              +F  + +   V+WN++IS +G+HG+  K +++F EM+  GV P  ++FVS+L ACSH
Sbjct: 574 AMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSH 633

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
           +G VEEGK  F  M +E+ I+PS++HY CMVDLLGRA  LE A   I+D+ ++P   +WG
Sbjct: 634 SGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWG 692

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           +LLG+CRIH N+EL + AS RLFE++  N G YVLL+++YA    W+ V +V+ L   RG
Sbjct: 693 ALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERG 752

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
           L+K PG S IEV RK+  F + ++ HP+ ++++  L  L+A+MK  GY+P    VL D++
Sbjct: 753 LKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVE 812

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            +EKE I+  HSE+LA+AFG+I+T     IRI KNLR+C DCH+ TKFIS+   +EI+VR
Sbjct: 813 EDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVR 872

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D NRFHHF++G+CSCGDYW
Sbjct: 873 DSNRFHHFKDGICSCGDYW 891



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 233/482 (48%), Gaps = 23/482 (4%)

Query: 53  NELIQSLCKQGNLRQALD-----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N +I +    G+  +A+      +L  E  P  +T+  +L +C    +L D   +H    
Sbjct: 186 NSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAF 242

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
             GF  + F+   LI++YS F     AR +FD    R +  WNA+   L   G   + L+
Sbjct: 243 KLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 302

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           +   M     GI+ +  T   +L  C         +     IH  V++HG    + +   
Sbjct: 303 VLDEMR--LEGIKMNFVTVVSILPVCPQ----LGDISTAMLIHLYVIKHGLEFDLFVSNA 356

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           LI+MYA+FG +  A   F QM + +VVSW+++IA Y +N     A   F +M +      
Sbjct: 357 LINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQ-- 414

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRG-LDSILPVVSALVTMYARCGKLELGQC 346
           P+ +T+VS+    A     +  + +HG+I+RRG L   + + +A+V MYA+ G L+    
Sbjct: 415 PDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK 474

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY-HGVSPSPISFVSVLGACSHAG 405
           VF+ +  +DV+SWN+LI+ Y  +G   +AI+++K M     + P+  ++VS+L A +H G
Sbjct: 475 VFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 534

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
            +++G  +   + K ++    V    C++D+ G+  +L +A  +   +  E     W ++
Sbjct: 535 ALQQGMKIHGRVIKTNL-HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAI 592

Query: 466 LGSCRIHCNVELAERASKRLFE--LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           +    IH + E   +    + +  ++P +   +V L    + +   +E K   RL++  G
Sbjct: 593 ISCHGIHGHAEKTLKLFGEMLDEGVKPDHV-TFVSLLSACSHSGFVEEGKWCFRLMQEYG 651

Query: 524 LQ 525
           ++
Sbjct: 652 IK 653



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 183/355 (51%), Gaps = 10/355 (2%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +H+ L   G  Q  F+ T+L+N+Y++   V  +R  FD+  ++ +Y WN++  A    G 
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
             E +  + ++    + IR D +T+  VLKAC         L  G++IH    + G+   
Sbjct: 198 FHEAIGCFYQLLLV-SEIRPDFYTFPPVLKAC-------GTLVDGRKIHCWAFKLGFQWN 249

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V +  +LI MY+RFG    A  +F  M  +++ SW+AMI+   +NG A +AL++  EM +
Sbjct: 250 VFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 309

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           E   +  N VT+VS+L  C  L  +    +IH Y+++ GL+  L V +AL+ MYA+ G L
Sbjct: 310 EGIKM--NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           E  +  F  M   DVVSWNS+I++Y  +     A   F +M  +G  P  ++ VS+    
Sbjct: 368 EDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIV 427

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           + +   +  + +   + +   +   V     +VD+  +   L+ A K+ E + ++
Sbjct: 428 AQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK 482



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 128/250 (51%), Gaps = 5/250 (2%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
            K +HA ++  G    + I T L+++YA  G V  +   F Q+  K+V +W++MI+ Y  
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 194

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           NG   EA+  F ++++ S ++ P+  T   VL+AC  L     G+ IH +  + G    +
Sbjct: 195 NGHFHEAIGCFYQLLLVS-EIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKLGFQWNV 250

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V ++L+ MY+R G   + + +FD M  RD+ SWN++IS    +G   +A+ +  EM   
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+  + ++ VS+L  C   G +    ML      +H +   +     ++++  +   LE+
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTA-MLIHLYVIKHGLEFDLFVSNALINMYAKFGNLED 369

Query: 446 AAKIIEDLRI 455
           A K  + + I
Sbjct: 370 ARKAFQQMFI 379


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/589 (39%), Positives = 371/589 (62%), Gaps = 11/589 (1%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           IEPN    T+  +L +C+  ++L     +  H+ + G+  D  + T L+++Y+   S+ D
Sbjct: 409 IEPNRV--TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKD 466

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  VF+K  ++ +  WNA+  A     + +  L  ++ +     GI+ +  T+T +L  C
Sbjct: 467 AHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL--LKEGIKPNSSTFTSILNVC 524

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
            +S      L+ GK +H  +++ G    +H+   L+ M+   G +M A  +F+ M  +++
Sbjct: 525 KSSDS----LELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDL 580

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+ +IA + ++G    A + F+  +M+   + P+ +T   +L ACA+  AL +G+ +H
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFK--MMQESGIKPDKITFTGLLNACASPEALTEGRRLH 638

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             I     D  + V + L++MY +CG +E    VF  + K++V SW S+I+ Y  HG G 
Sbjct: 639 ALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGK 698

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A+++F +M   GV P  I+FV  L AC+HAGL+EEG   F+SM KE  I P +EHY CM
Sbjct: 699 EALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCM 757

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDL GRA  L EA + I  +++EP  +VWG+LLG+C++H NVELAE+A+++  EL+P + 
Sbjct: 758 VDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDN 817

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           G +V+L+++YAAA MW EV ++++++  RG+ K PG+S IEV  K+++F S D+ HPQ E
Sbjct: 818 GVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTE 877

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           ++HA L  L  EM++ GYVP T+ VL+D++  EKE+ +  HSE+LA+ +GL+ T     I
Sbjct: 878 EIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPI 937

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            I+KNLR+C DCH+ TKFISK   ++I+ RD NRFHHF++GVCSCGD+W
Sbjct: 938 VISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 250/488 (51%), Gaps = 25/488 (5%)

Query: 48  SSRNKNELIQSLCKQGNLRQALDVLS-IEPNPTQ---HTYELLLLSCTHHNSLSDALNVH 103
            ++  N ++  L K G   +A+ VL  ++ +  Q    TY  LL  C    +L D   ++
Sbjct: 74  DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 104 SHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE 163
           +H+  +G   D F+   LIN+Y+   +   A+ +FD  R + +Y WN L       G  E
Sbjct: 134 NHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           E  +L+ +M      ++ D+ T+  +L AC  +      +  G+E++  +L+ G++  + 
Sbjct: 194 EAFKLHEQM--VQDSVKPDKRTFVSMLNACADARN----VDKGRELYNLILKAGWDTDLF 247

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           + T LI+M+ + G +  A  VF  +  +++V+W++MI   AR+G   +A  LF+ M  E 
Sbjct: 248 VGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRM--EE 305

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
             + P+ V  VS+L+AC    ALEQGK +H  +   G D+ + V +A+++MY +CG +E 
Sbjct: 306 EGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMED 365

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              VFD +  R+VVSW ++I+ +  HG   +A   F +MI  G+ P+ ++F+S+LGACS 
Sbjct: 366 ALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSS 425

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEH----YACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
              ++ G+ +     ++H+I             ++ +  +   L++A ++ E +  +   
Sbjct: 426 PSALKRGQQI-----QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNV 479

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFE--LEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
             W +++ +   H   + A    + L +  ++P N+  +  + +V  ++D  +  K V  
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCKSSDSLELGKWVHF 538

Query: 518 LLEARGLQ 525
           L+   GL+
Sbjct: 539 LIMKAGLE 546


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/621 (39%), Positives = 383/621 (61%), Gaps = 17/621 (2%)

Query: 53   NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
            N +I  L + G+  +AL   S    +   PT+ ++   + SC+    L      H     
Sbjct: 1111 NSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFV 1170

Query: 109  NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
             GF+ D F+ + LI++YS    + DAR +FD+   R +  W ++        + +  L L
Sbjct: 1171 FGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLL 1230

Query: 169  YRRM------NGTGTGIRSDRFTYTYVLKACV-ASSCGFSLLKHGKEIHASVLRHGYNGI 221
            ++           G  +  D      VL AC   S  G +     + +H  V++ G++G 
Sbjct: 1231 FKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGIT-----EGVHGFVVKKGFDGS 1285

Query: 222  VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
            + +  TL+D YA+ G  + +  VF  M  K+ +SW++MIA YA++G++ EALE+F  M+ 
Sbjct: 1286 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVR 1345

Query: 282  ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
                +  N+VT+ +VL ACA   AL  GK IH  +++  L+  + V ++++ MY +CG++
Sbjct: 1346 HV-GVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRV 1404

Query: 342  ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
            E+ +  FD M +++V SW ++++ YG+HG   +A+ IF +M+  GV P+ I+FVSVL AC
Sbjct: 1405 EMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAAC 1464

Query: 402  SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
            SHAGLVEEG   F +M+ ++ I P +EHY CMVDL GRA  L EA  +I+ ++++P   V
Sbjct: 1465 SHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVV 1524

Query: 462  WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
            WGSLLG+CRIH NV+L E A+++LFEL+P N G YVLL+++YA A  W +V+R++ L++ 
Sbjct: 1525 WGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKN 1584

Query: 522  RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
            R L K PG S +E+K +++ F+  D+ HP  E ++  L  L+ E+++ GYVP    VL+D
Sbjct: 1585 RQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHD 1644

Query: 582  LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
            +D EEKE I+  HSEKLAVAFG++N++ G TI I KNLR+C DCH+  K ISK  +++ +
Sbjct: 1645 VDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFV 1704

Query: 642  VRDVNRFHHFRNGVCSCGDYW 662
            VRD  RFHHF++GVCSCGDYW
Sbjct: 1705 VRDSKRFHHFKDGVCSCGDYW 1725



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 214/400 (53%), Gaps = 42/400 (10%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR 144
            LL +C +   L     +H+ +  +G   D  L  KLI++YS    +  A  +F + +  
Sbjct: 32  FLLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 145 TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK 204
             + WN + RA T+ G  E+ L LY+ M     GI +D+FT+ +V+KAC      F  + 
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNM--VCQGIAADKFTFPFVIKACT----NFLSID 142

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-------------- 250
            GK +H S++++G++G V +   LID Y + G   +A  VF +M V              
Sbjct: 143 LGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLI 202

Query: 251 -----------------KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
                            KNVVSW+AMI  Y RN    EALELF+ M  ++ ++ PN  TM
Sbjct: 203 SCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM--QAENIFPNEYTM 260

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
           VS+++AC  +  L  G+ IH Y ++  ++  + + +AL+ MY++CG ++    VF+ M +
Sbjct: 261 VSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPR 320

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           + + +WNS+I+S GVHG G +A+ +F EM    V P  I+F+ VL AC H   V+EG   
Sbjct: 321 KSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAY 380

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           F  M + + I P  EHY CM +L  R+N L+EA K  +++
Sbjct: 381 FTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 130/299 (43%), Gaps = 48/299 (16%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
           + T+  ++ +CT+  S+     VH  L   GF  D F+   LI+ Y        A  VF+
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 140 KTRRRTIYVWNALFRALTLAG-------------------------------RGEEVLEL 168
           K R R +  W  +   L   G                               + EE LEL
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           ++RM      I  + +T   ++KAC        +L  G+ IH   +++     V++ T L
Sbjct: 245 FKRMQ--AENIFPNEYTMVSLIKACTE----MGILTLGRGIHDYAIKNCIEIGVYLGTAL 298

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY++ G +  A  VF  M  K++ +W++MI     +G+  EAL LF E  ME  ++ P
Sbjct: 299 IDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSE--MERVNVKP 356

Query: 289 NSVTMVSVLQACAALAALEQG-----KMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
           +++T + VL AC  +  +++G     +M   Y    G+  I      +  +YAR   L+
Sbjct: 357 DAITFIGVLCACVHIKNVKEGCAYFTRMTQHY----GIAPIPEHYECMTELYARSNNLD 411



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 10/170 (5%)

Query: 241  AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
            A + +  +   NV SW+++IA  AR G + EAL  F    +    L P   +    +++C
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSS--LRKLGLIPTRSSFPCTIKSC 1152

Query: 301  AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
            +AL  L  G+M H      G ++ L V SAL+ MY++CG+L+  + +FD +  R+VVSW 
Sbjct: 1153 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWT 1212

Query: 361  SLISSYGVHGYGGKAIQIFKEMIY--------HGVSPSPISFVSVLGACS 402
            S+I+ Y  +     A+ +FK+ +         + V    +  VSVL ACS
Sbjct: 1213 SMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 1262



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P ++T   L+ +CT    L+    +H +   N  +   +L T LI++YS   S+ DA  V
Sbjct: 255 PNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEV 314

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           F+   R+++  WN++  +L + G G+E L L+  M      ++ D  T+  VL ACV
Sbjct: 315 FETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEME--RVNVKPDAITFIGVLCACV 369


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/555 (41%), Positives = 362/555 (65%), Gaps = 9/555 (1%)

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           F  DPF  + L+++Y+H     DAR  FD+       +  A+             L L+R
Sbjct: 121 FPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYVRNNLVYPSLALFR 180

Query: 171 RMNGTGTGIRSDRFTYTYVLKACV-ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           ++  +G+    D         A      CG +       +HA V++ G +G   ++ T++
Sbjct: 181 KLIASGSATAVDEAAALVAFSASARIPDCGIT-----SSLHALVVKTGLDGDAGVVNTML 235

Query: 230 DMYARFG--CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           D YA+ G   +  A  VF  M  K+VVSW++MIA YA+NGM+ +AL L+R+M+  S  + 
Sbjct: 236 DAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIK 294

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
            N+VT+ ++L ACA    ++ GK IH  ++R GL+  + V +++V MY++CG++E+ +  
Sbjct: 295 CNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKA 354

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F  + +++++SW+++I+ YG+HG+G +A+ IF EM   G +P+ I+F+SVL ACSHAGL+
Sbjct: 355 FQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLL 414

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           ++G+  + +M+K   I P VEHY CMVDLLGRA  L+EA  +I++++++P   +WG+LL 
Sbjct: 415 DKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLS 474

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           +CRIH NVELAE ++KRLFEL+ TN G YVLL+++YA A MW +V+R++ L++ RG++K 
Sbjct: 475 ACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKP 534

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           PG S +E+K + + F   D+ HPQ +++++ L  L  +M+E GYVP T  VL+DLD EEK
Sbjct: 535 PGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEK 594

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
              +  HSEKLA+AF L+N+  G  I + KNLR+C DCH+  K I+K A +EI+VRD+ R
Sbjct: 595 ASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQR 654

Query: 648 FHHFRNGVCSCGDYW 662
           FHHF++G CSCGDYW
Sbjct: 655 FHHFKDGSCSCGDYW 669



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 12/204 (5%)

Query: 63  GNLRQALDVL-SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKL 121
           G  R+ L+V  SI+ N    T   +LL+C H  ++     +H+ +   G +++ ++ T +
Sbjct: 281 GLYRKMLNVSGSIKCNAV--TLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSV 338

Query: 122 INVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
           +++YS    V+ AR  F K + + I  W+A+     + G G+E L+++  M  +G     
Sbjct: 339 VDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQ--NP 396

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASV-LRHGYNGIVHIMTTLIDMYARFGCVMY 240
           +  T+  VL AC  S  G  LL  G+  + ++  R G    V     ++D+  R GC+  
Sbjct: 397 NYITFISVLAAC--SHAG--LLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDE 452

Query: 241 AGFVFSQMAVK-NVVSWSAMI-AC 262
           A  +  +M VK +   W A++ AC
Sbjct: 453 AYGLIKEMKVKPDAAIWGALLSAC 476


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/586 (40%), Positives = 367/586 (62%), Gaps = 8/586 (1%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P + T+  +L  C+   +LS+   +H+ +   GF    F+   LI++Y++   V+ AR 
Sbjct: 121 QPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARR 180

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD+   R +  WN++F   T +G  EEV++L+  M      IR D  T   VL AC   
Sbjct: 181 VFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEM--LELDIRFDEVTLVSVLTAC--- 235

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
               + L+ G+ I+  V   G  G   ++T+L+DMYA+ G V  A  +F QM  ++VV+W
Sbjct: 236 -GRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAW 294

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           SAMI+ Y++     EAL+LF EM  +  ++ PN +TMVS+L +CA L ALE GK +H +I
Sbjct: 295 SAMISGYSQASRCREALDLFHEM--QKANIDPNEITMVSILSSCAVLGALETGKWVHFFI 352

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            ++ +   + + +AL+  YA+CG +E    VF  M  ++V+SW  LI     +G G KA+
Sbjct: 353 KKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKAL 412

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           + F  M+   V P+ ++F+ VL ACSHAGLV+EG+ LF SM ++  I P +EHY CMVD+
Sbjct: 413 EYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDI 472

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA  +EEA + I+++ I+P   +W +LL SC++H NVE+ E + K+L  LEPT++G+Y
Sbjct: 473 LGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDY 532

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           +LL+++YA+   W++  +V+  ++ +G++K PG S IE+   ++ F + D  H Q E+++
Sbjct: 533 ILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIY 592

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             + ++  ++K  GYVP T     D + ++KE  V  HSEKLA+AFGLI +  G TIRIT
Sbjct: 593 NAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRIT 652

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+ TK +SK  N+EI+VRD  RFHHF+ G CSC DYW
Sbjct: 653 KNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 199/374 (53%), Gaps = 14/374 (3%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF--DSVDDARHVFDKTR 142
           L+L  C    ++ D   +H+HL        P +   L+   +     S+D A  +F +  
Sbjct: 29  LILEQC---KTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQID 85

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
                 +N + R  TL     E + L++ M+     ++ D FT+  +LK C         
Sbjct: 86  EPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENS--VQPDEFTFPCILKVC----SRLQA 139

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L  G++IHA +++ G+     +  TLI MYA  G V  A  VF +M+ +NV +W++M A 
Sbjct: 140 LSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAG 199

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y ++G   E ++LF EM+    D+  + VT+VSVL AC  LA LE G+ I+ Y+  +GL 
Sbjct: 200 YTKSGNWEEVVKLFHEML--ELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLK 257

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
               ++++LV MYA+CG+++  + +FD MD+RDVV+W+++IS Y       +A+ +F EM
Sbjct: 258 GNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEM 317

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
               + P+ I+ VS+L +C+  G +E GK +   ++K+ M + +V     ++D   +   
Sbjct: 318 QKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRM-KLTVTLGTALMDFYAKCGS 376

Query: 443 LEEAAKIIEDLRIE 456
           +E + ++   + ++
Sbjct: 377 VESSIEVFGKMPVK 390



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 165/348 (47%), Gaps = 18/348 (5%)

Query: 50  RNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSH 105
           R  N +     K GN  + +    ++L ++    + T   +L +C     L     ++ +
Sbjct: 191 RTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRY 250

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
           + + G   +P L+T L+++Y+    VD AR +FD+  RR +  W+A+    + A R  E 
Sbjct: 251 VEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREA 310

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L+L+  M      I  +  T   +L +C         L+ GK +H  + +      V + 
Sbjct: 311 LDLFHEMQ--KANIDPNEITMVSILSSCAV----LGALETGKWVHFFIKKKRMKLTVTLG 364

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           T L+D YA+ G V  +  VF +M VKNV+SW+ +I   A NG   +ALE F   +M   +
Sbjct: 365 TALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYF--YLMLEKN 422

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELG 344
           + PN VT + VL AC+    +++G+ +   + R  G++  +     +V +  R G +E  
Sbjct: 423 VEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEA 482

Query: 345 QCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
                +M  + + V W +L++S  VH    K ++I +E +   +   P
Sbjct: 483 FQFIKNMPIQPNAVIWRTLLASCKVH----KNVEIGEESLKQLIILEP 526


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/619 (40%), Positives = 382/619 (61%), Gaps = 21/619 (3%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I  L + GN  QALDVL       I+ N    T   +L  C     +S A+ +H ++
Sbjct: 285 NAMISGLIQNGNAAQALDVLDEMRLEGIKMNFV--TVVSILPVCPQLGDISTAMLIHLYV 342

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             +G + D F+   LIN+Y+ F +++DAR  F +     +  WN++  A           
Sbjct: 343 IKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAH 402

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASS--CGFSLLKHGKEIHASVLRHGY-NGIVH 223
             + +M   G   + D  T    L + VA S  C     K+ + +H  ++R G+    V 
Sbjct: 403 GFFVKMQLNG--FQPDLLTLV-SLASIVAQSRDC-----KNSRSVHGFIMRRGWLMEDVV 454

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           I   ++DMYA+ G +  A  VF  + VK+V+SW+ +I  YA+NG+A EA+E+++ M+ E 
Sbjct: 455 IGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYK-MMEEC 513

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
            ++ PN  T VS+L A A + AL+QG  IHG +++  L   + V + L+ +Y +CG+L  
Sbjct: 514 KEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVD 573

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              +F  + +   V+WN++IS +G+HG+  K +++F EM+  GV P  ++FVS+L ACSH
Sbjct: 574 AMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSH 633

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
           +G VEEGK  F  M +E+ I+PS++HY CMVDLLGRA  LE A   I+D+ ++P   +WG
Sbjct: 634 SGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWG 692

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           +LLG+CRIH N+EL + AS RLFE++  N G YVLL+++YA    W+ V +V+ L   RG
Sbjct: 693 ALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERG 752

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
           L+K PG S IEV RK+  F + ++ HP+ ++++  L  L+A+MK  GY+P    VL D++
Sbjct: 753 LKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVE 812

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            +EKE I+  HSE+LA+AFG+I+T     IRI KNLR+C DCH+ TKFIS+   +EI+VR
Sbjct: 813 EDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVR 872

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D NRFHHF++G+CSCGDYW
Sbjct: 873 DSNRFHHFKDGICSCGDYW 891



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 233/482 (48%), Gaps = 23/482 (4%)

Query: 53  NELIQSLCKQGNLRQALD-----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N +I +    G+  +A+      +L  E  P  +T+  +L +C    +L D   +H    
Sbjct: 186 NSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAF 242

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
             GF  + F+   LI++YS F     AR +FD    R +  WNA+   L   G   + L+
Sbjct: 243 KLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 302

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           +   M     GI+ +  T   +L  C         +     IH  V++HG    + +   
Sbjct: 303 VLDEMR--LEGIKMNFVTVVSILPVCPQ----LGDISTAMLIHLYVIKHGLEFDLFVSNA 356

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           LI+MYA+FG +  A   F QM + +VVSW+++IA Y +N     A   F +M +      
Sbjct: 357 LINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQ-- 414

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRG-LDSILPVVSALVTMYARCGKLELGQC 346
           P+ +T+VS+    A     +  + +HG+I+RRG L   + + +A+V MYA+ G L+    
Sbjct: 415 PDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK 474

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY-HGVSPSPISFVSVLGACSHAG 405
           VF+ +  +DV+SWN+LI+ Y  +G   +AI+++K M     + P+  ++VS+L A +H G
Sbjct: 475 VFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 534

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
            +++G  +   + K ++    V    C++D+ G+  +L +A  +   +  E     W ++
Sbjct: 535 ALQQGMRIHGRVIKTNL-HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAI 592

Query: 466 LGSCRIHCNVELAERASKRLFE--LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           +    IH + E   +    + +  ++P +   +V L    + +   +E K   RL++  G
Sbjct: 593 ISCHGIHGHAEKTLKLFGEMLDEGVKPDHV-TFVSLLSACSHSGFVEEGKWCFRLMQEYG 651

Query: 524 LQ 525
           ++
Sbjct: 652 IK 653



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 182/355 (51%), Gaps = 10/355 (2%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +H+ L   G  Q  F+ T+L+N+Y++   V  +R  FD+  ++ +Y WN++  A    G 
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
             E +  + ++    + IR D +T+  VLKAC         L  G+ IH    + G+   
Sbjct: 198 FHEAIGCFYQLLLV-SEIRPDFYTFPPVLKAC-------GTLVDGRRIHCWAFKLGFQWN 249

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V +  +LI MY+RFG    A  +F  M  +++ SW+AMI+   +NG A +AL++  EM +
Sbjct: 250 VFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 309

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           E   +  N VT+VS+L  C  L  +    +IH Y+++ GL+  L V +AL+ MYA+ G L
Sbjct: 310 EGIKM--NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           E  +  F  M   DVVSWNS+I++Y  +     A   F +M  +G  P  ++ VS+    
Sbjct: 368 EDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIV 427

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           + +   +  + +   + +   +   V     +VD+  +   L+ A K+ E + ++
Sbjct: 428 AQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVK 482



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 128/249 (51%), Gaps = 5/249 (2%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           K +HA ++  G    + I T L+++YA  G V  +   F Q+  K+V +W++MI+ Y  N
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHN 195

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           G   EA+  F ++++ S ++ P+  T   VL+AC  L     G+ IH +  + G    + 
Sbjct: 196 GHFHEAIGCFYQLLLVS-EIRPDFYTFPPVLKACGTLV---DGRRIHCWAFKLGFQWNVF 251

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           V ++L+ MY+R G   + + +FD M  RD+ SWN++IS    +G   +A+ +  EM   G
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           +  + ++ VS+L  C   G +    ML      +H +   +     ++++  +   LE+A
Sbjct: 312 IKMNFVTVVSILPVCPQLGDISTA-MLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDA 370

Query: 447 AKIIEDLRI 455
            K  + + I
Sbjct: 371 RKAFQQMFI 379


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/678 (37%), Positives = 390/678 (57%), Gaps = 42/678 (6%)

Query: 16  PYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIE 75
           P H++S    P +P +     + +++  P   + +  +E I  LC+Q  L++AL +L   
Sbjct: 10  PSHSSS----PFQPKTFFKSNTKDTTLVPHLCNHKRFDEAIHILCQQNRLKEALQILHQI 65

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
             P+   Y  L+ SC     L     VH H+  +GF    F++ +L+ +Y+  DS+ D++
Sbjct: 66  DKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQ 125

Query: 136 HVFDKTRRRTIYVWNALFRALTLAG-------------------------------RGEE 164
            +FD+   R +  WN L       G                               R  E
Sbjct: 126 KLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNE 185

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
            LEL+R M  +    +S++FT +  L A  A  C    L+ GKEIH  ++R G +    +
Sbjct: 186 ALELFRMMKRSDNS-KSNKFTVSSALAAAAAVPC----LRIGKEIHGYIMRTGLDSDEVV 240

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
            + L DMY + G +  A  +F +M  +++V+W+AMI  Y ++G   E  +LF +++    
Sbjct: 241 WSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSG- 299

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
            + PN  T   VL ACA   + E GK +HGY+ R G D      SALV MY++CG +   
Sbjct: 300 -IRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSA 358

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           + VF    + D+ SW SLI+ Y  +G   +AI+ F+ ++  G  P  I+FV VL AC+HA
Sbjct: 359 ERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHA 418

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           GLV++G   F S+++++ +  + +HYAC++DLL R+ + +EA  II  + ++P   +W S
Sbjct: 419 GLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWAS 478

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LLG CRIH N++LA+RA++ LFE+EP N   YV LA++YA A MW EV ++++ ++ RG+
Sbjct: 479 LLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGV 538

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
            K PG S I +KR ++ F+  D+ HP+ ++++  L  LS  MKE+G+VP T  VL+D++ 
Sbjct: 539 VKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVED 598

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           E+KE+ +  HSEKLAVAFG+I+T +G  I++ KNLR C DCH+  KFISK  N++I+VRD
Sbjct: 599 EQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRD 658

Query: 645 VNRFHHFRNGVCSCGDYW 662
            NRFH F +G CSC DYW
Sbjct: 659 SNRFHFFEDGHCSCRDYW 676


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/621 (40%), Positives = 367/621 (59%), Gaps = 42/621 (6%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF----- 128
           +EPN   +T+  LL SC    +  +   +H H+   G + DPF+ T LIN+Y+       
Sbjct: 128 VEPN--SYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGY 185

Query: 129 -----------DSV---------------DDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
                      D+V               DDAR +F++   R    WNA+      +GR 
Sbjct: 186 AELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRF 245

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
           EE L  ++ M      +  +  T   VL AC  S      L+ G  + + +  HG    +
Sbjct: 246 EEALAFFQEMKRAN--VAPNESTMVTVLSACAQSGS----LELGNWVRSWIEDHGLGSNL 299

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
            ++  LIDMY++ G +  A  +F  +  K+++SW+ MI  Y+      EAL LFR+M  +
Sbjct: 300 RLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKM--Q 357

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-SILPVVSALVTMYARCGKL 341
             ++ PN VT VS+L ACA L AL+ GK IH YI ++ L  +   + ++L+ MYA+CG +
Sbjct: 358 QSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNI 417

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           E  + VF  M  + + SWN++IS   +HG+   A+++F++M   G  P  I+FV VL AC
Sbjct: 418 EAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSAC 477

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SHAGLVE G+  F SM +++ I P ++HY CM+DLLGRA   +EA  +++++ ++P   +
Sbjct: 478 SHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAI 537

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           WGSLLG+CR+H NVEL E A+K LFELEP N G YVLL+++YA A  WD+V R++  L  
Sbjct: 538 WGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLND 597

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           +G++KVPG S IEV   ++ F+  D+ H Q + ++ +L  +   +++ G+VP T  VLYD
Sbjct: 598 KGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYD 657

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           +D E KE  +  HSEKLA+AFGLI+T    TIRI KNLR+C +CHS  K ISK  N+EI+
Sbjct: 658 MDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREII 717

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
            RD NRFHHF++G CSC DYW
Sbjct: 718 ARDRNRFHHFKDGSCSCMDYW 738



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC--GKLELGQCVFDHM 351
           +++L  C +   L+Q   IH  I++ GL +    +S L+   A    G L     +F+ +
Sbjct: 36  LTLLSTCKSFQNLKQ---IHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           ++ +   WN++I    +      AI  +  M+  GV P+  +F  +L +C+  G  +EGK
Sbjct: 93  EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGK 152

Query: 412 ML 413
            +
Sbjct: 153 QI 154


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/590 (41%), Positives = 363/590 (61%), Gaps = 11/590 (1%)

Query: 71   VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
            +L +E + T  T   +L++  +  +LS    +H       F ++      L+++YS   +
Sbjct: 564  ILGVEVDLT--TLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGN 621

Query: 131  VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
            ++ A  VF K    TI  W +   A    G   + + L+  M   G  +R D +T T ++
Sbjct: 622  LNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKG--VRPDIYTVTSIV 679

Query: 191  KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
             AC  SS     L  G+++H+ V+++G    + +   LI+MYA+ G V  A  VFS++ V
Sbjct: 680  HACACSSS----LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV 735

Query: 251  KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
            K++VSW+ MI  Y++N +  EALELF +M        P+ +TM  VL ACA LAAL++G+
Sbjct: 736  KDIVSWNTMIGGYSQNSLPNEALELFLDM---QKQFKPDDITMACVLPACAGLAALDKGR 792

Query: 311  MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
             IHG+ILRRG  S L V  ALV MYA+CG L L Q +FD + K+D++SW  +I+ YG+HG
Sbjct: 793  EIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHG 852

Query: 371  YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
            +G +AI  F EM   G+ P   SF  +L ACSH+GL+ EG   F SMR E  + P +EHY
Sbjct: 853  FGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHY 912

Query: 431  ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
            AC+VDLL R   L +A K IE + I+P   +WG LL  CRIH +V+LAE+ ++ +FELEP
Sbjct: 913  ACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEP 972

Query: 491  TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
             N   YV+LA+VYA A+ W+EVK++++ ++ RG ++ PG S IEV  K   FV+ +  HP
Sbjct: 973  DNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHP 1032

Query: 551  QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
            Q +++  LL  L+ +M+ + Y    + VL + D  EKE I  GHSEK A+AFG++N   G
Sbjct: 1033 QAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPG 1092

Query: 611  ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
             T+R++KN R+C DCH   KF+SK   +EI++RD NRFHHF++G+CSC D
Sbjct: 1093 RTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 131/476 (27%), Positives = 229/476 (48%), Gaps = 39/476 (8%)

Query: 15  SPYHTNSIAH-----------LPPKPSSVC-----CCVSLNSSTTPTSLSSRNKNELIQS 58
           SPYHT+                  +P   C      CVS + + T  S++ +N+N  I  
Sbjct: 287 SPYHTHKTTSNYTKKSHNRFIFFKQPRRTCLLHSTVCVSPSFTNTTHSVT-QNQNAKINK 345

Query: 59  LCKQGNLRQALDVLSIEPNPTQHTYELLLLS-------CTHHNSLSDALNVHSHLTDNGF 111
            C+ G+LR A+++L+        +YEL L S       C    SL D   VHS +  NG 
Sbjct: 346 FCEMGDLRNAIELLT-----KSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGI 400

Query: 112 DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR 171
             D  L  KL+ +Y +   +   R +FDK     +++WN L       G   E + L+++
Sbjct: 401 SIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKK 460

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           M     G+  + +T+T VLK C A+      +K  K +H  VL+ G+     ++ +LI  
Sbjct: 461 MQ--KLGVVGNCYTFTCVLK-CFAA---LGKVKECKRVHGYVLKLGFGSNTAVVNSLIAA 514

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           Y +FG V  A  +F +++  +VVSW++MI     NG +   LE+F +M++   ++  +  
Sbjct: 515 YFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEV--DLT 572

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T+VSVL A A +  L  G+ +HG+ ++      +   + L+ MY++CG L     VF  M
Sbjct: 573 TLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 632

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
               +VSW S I++Y   G    AI +F EM   GV P   +  S++ AC+ +  +++G+
Sbjct: 633 GDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGR 692

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
            +   + K  M   ++     ++++  +   +EEA  +   + ++     W +++G
Sbjct: 693 DVHSYVIKNGM-GSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS-WNTMIG 746


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/582 (40%), Positives = 371/582 (63%), Gaps = 10/582 (1%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y+ +L  C    ++ +   VH+H+    ++   +L T+LI +Y+    + DAR V D+  
Sbjct: 13  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
            R +  W A+    +  G   E L L+  M  +GT    + FT+  VL +C +SS GF L
Sbjct: 73  ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTA--PNEFTFATVLTSCTSSS-GFQL 129

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
              G++IH+ V++  +   + + ++L+DMYA+ G +  A  VF  +  ++VVS +A+I+ 
Sbjct: 130 ---GRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISG 186

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           YA+ G+  EAL+LFR +  E   +  N VT  SVL A + LAAL+ G+ +H ++LR  L 
Sbjct: 187 YAQLGLDEEALDLFRRLQREG--MRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLP 244

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             + + ++L+ MY++CG L   + +FD M +R V+SWN+++  Y  HG G +A+++FK M
Sbjct: 245 FYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLM 304

Query: 383 IYHG-VSPSPISFVSVLGACSHAGLVEEG-KMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
                V P  ++F++VL  CSH G+ + G ++ +E + ++    P +EHY C+VDL GRA
Sbjct: 305 KEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRA 364

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            ++EEA + I+ +  EP   +WGSLLG+CR+H NV + E  ++RL E+E  NAGNYV+L+
Sbjct: 365 GRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILS 424

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YA+A  WD+V+ V+ L++ + + K PGRS IE+ + +++F + D  HP+ E++ A + 
Sbjct: 425 NLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVR 484

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            LS ++KE GYVP+   VLYD+D E+KE+I+ GHSEKLA+AFGLI T  G  +RI KNLR
Sbjct: 485 ELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLR 544

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH+F KF+S+   +E+ +RD NRFHH   G CSCGDYW
Sbjct: 545 ICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 163/322 (50%), Gaps = 14/322 (4%)

Query: 55  LIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    ++G   +AL    ++L     P + T+  +L SCT  +       +HS +    
Sbjct: 82  MISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTS 141

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           F+   F+ + L+++Y+    + +AR VFD    R +    A+       G  EE L+L+R
Sbjct: 142 FESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFR 201

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           R+     G+RS+  TY  VL A      G + L HG+++H+ VLR      V +  +LID
Sbjct: 202 RLQ--REGMRSNYVTYASVLTAL----SGLAALDHGRQVHSHVLRAKLPFYVVLQNSLID 255

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MY++ G + Y+  +F  M  + V+SW+AM+  Y+++G+  EA+ELF+ ++ E + + P+S
Sbjct: 256 MYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFK-LMKEENKVKPDS 314

Query: 291 VTMVSVLQACAALAALEQGKMIHGYIL--RRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           VT ++VL  C+     ++G  I   ++  + G +  +     +V ++ R G++E      
Sbjct: 315 VTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFI 374

Query: 349 DHMDKRDVVS-WNSLISSYGVH 369
             M      + W SL+ +  VH
Sbjct: 375 KKMPFEPTAAIWGSLLGACRVH 396


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/590 (40%), Positives = 383/590 (64%), Gaps = 11/590 (1%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
           S+EP  T   Y  +L  CT+   L     +H+H+  + F+ D  L+  ++N+Y+   S++
Sbjct: 100 SLEPERT--LYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLE 157

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           +A+ +FDK   + +  W  L    + +G+  E L L+ +M     G + + FT + +LKA
Sbjct: 158 EAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKM--LHLGFQPNEFTLSSLLKA 215

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
              S  G S   HG+++HA  L++GY+  VH+ ++L+DMYAR+  +  A  +F+ +A KN
Sbjct: 216 ---SGTGPSD-HHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKN 271

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           VVSW+A+IA +AR G     + LF +M+ +  +  P   T  SV  ACA+  +LEQGK +
Sbjct: 272 VVSWNALIAGHARKGEGEHVMRLFLQMLRQGFE--PTHFTYSSVFTACASSGSLEQGKWV 329

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           H ++++ G   I  + + L+ MYA+ G ++  + VF  + K+D+VSWNS+IS Y  HG G
Sbjct: 330 HAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLG 389

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +A+Q+F++M+   V P+ I+F+SVL ACSH+GL++EG+  FE M+K H I   V H+  
Sbjct: 390 AEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVT 448

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
           +VDLLGRA +L EA K IE++ I+P   VWG+LLGSCR+H N++L   A++++FEL+P +
Sbjct: 449 VVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHD 508

Query: 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQF 552
           +G +VLL+++YA+A    +  +V+++++  G++K P  S +E++ +++ FV+ D+ HP  
Sbjct: 509 SGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMR 568

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
           E++  +   +S ++KE GYVP T  VL+ ++ +++E  +  HSEKLA+AF ++ T  G T
Sbjct: 569 EEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLT 628

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IRI KN+R+C DCHS  KF S+   +EI+VRD NRFHHF +G+CSC DYW
Sbjct: 629 IRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 115/257 (44%), Gaps = 21/257 (8%)

Query: 45  TSLSSRNK---NELIQSLCKQGN----LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLS 97
            SL+++N    N LI    ++G     +R  L +L     PT  TY  +  +C    SL 
Sbjct: 265 NSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLE 324

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALT 157
               VH+H+  +G     ++   LI++Y+   S+ DA+ VF +  ++ I  WN++     
Sbjct: 325 QGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYA 384

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
             G G E L+L+ +M      ++ +  T+  VL AC  S     LL  G+     + +H 
Sbjct: 385 QHGLGAEALQLFEQM--LKAKVQPNEITFLSVLTACSHS----GLLDEGQYYFELMKKHK 438

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMI-ACYARNGM---AFEA 272
               V    T++D+  R G +  A     +M +K   + W A++ +C     M    + A
Sbjct: 439 IEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAA 498

Query: 273 LELFREMIMESHDLCPN 289
            ++F    ++ HD  P+
Sbjct: 499 EQIFE---LDPHDSGPH 512


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/577 (41%), Positives = 357/577 (61%), Gaps = 7/577 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +   C     +S    VH       F ++      L+++YS    +D A+ VF +   R+
Sbjct: 302 VFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRS 361

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  + ++       G   E ++L+  M   G  I  D +T T VL  C  +     LL  
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEG--ISPDVYTVTAVLNCCARNR----LLDE 415

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK +H  +  +     + +   L+DMYA+ G +  A  VFS+M VK+++SW+ +I  Y++
Sbjct: 416 GKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSK 475

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           N  A EAL LF  +++E     P+  T+  VL ACA+L+A ++G+ IHGYI+R G  S  
Sbjct: 476 NCYANEALSLFNLLLVEKR-FSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V ++LV MYA+CG L L + +FD +  +D+VSW  +I+ YG+HG+G +AI +F +M   
Sbjct: 535 HVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQA 594

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ P  ISFVS+L ACSH+GLV+EG   F  MR E  I P+VEHYAC+VD+L R   L +
Sbjct: 595 GIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSK 654

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A + IE++ I P   +WG+LL  CRIH +V+LAER ++++FELEP N G YVL+A++YA 
Sbjct: 655 AYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAE 714

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
           A+ W+EVKR+++ +  RGL+K PG S IE+K ++  FV+ D  +P+ E++ A L  + A 
Sbjct: 715 AEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRAR 774

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           M E+GY P TK  L D +  EKE  + GHSEKLA+A G+I++  G+ IR+TKNLR+C DC
Sbjct: 775 MIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDC 834

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H   KF+SK   +EI++RD NRFH F++G CSC  +W
Sbjct: 835 HEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 218/442 (49%), Gaps = 26/442 (5%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHN 94
           S T    S  + N  ++  C+ GNL+ A+ +L       I+P       +L    C    
Sbjct: 53  SITTFDRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPRTLCSVLQL----CADSK 108

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           SL D   V + +  NGF  D  L +KL  +Y++   + +A  VFD+ +      WN L  
Sbjct: 109 SLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMN 168

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH---GKEIHA 211
            L  +G     + L+++M    +G+  D +T++     CV+ S  FS L+    G+++H 
Sbjct: 169 ELAKSGDFSGSIGLFKKM--MSSGVEMDSYTFS-----CVSKS--FSSLRSVNGGEQLHG 219

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
            +L+ G+     +  +L+  Y +   V  A  VF +M  ++V+SW+++I  Y  NG+A +
Sbjct: 220 YILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
            L +F +M+    ++  +  T+VSV   CA    +  G+ +H + ++          + L
Sbjct: 280 GLSVFVQMLFSGIEI--DLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTL 337

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MY++CG L+  + VF  M  R VVS+ S+I+ Y   G  G+A+++F+EM   G+SP  
Sbjct: 338 LDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDV 397

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
            +  +VL  C+   L++EGK + E +++  M        A M D+  +   + EA  +  
Sbjct: 398 YTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALM-DMYAKCGSMREAELVFS 456

Query: 452 DLRIEPGPKVWGSLLGSCRIHC 473
           ++R++     W +++G    +C
Sbjct: 457 EMRVKDIIS-WNTVIGGYSKNC 477



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 83/191 (43%), Gaps = 18/191 (9%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P + T   +L +C   ++      +H ++  NG+  D  +   L+++Y+   ++  AR 
Sbjct: 496 SPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARL 555

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FD    + +  W  +     + G G+E + L+ +M     GI  D  ++  +L AC  S
Sbjct: 556 LFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMR--QAGIEPDEISFVSLLYACSHS 613

Query: 197 SC------GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
                    F++++H  +I  +V  +           ++DM AR G +  A      M +
Sbjct: 614 GLVDEGWRFFNIMRHECKIEPTVEHY---------ACIVDMLARTGNLSKAYRFIENMPI 664

Query: 251 -KNVVSWSAMI 260
             +   W A++
Sbjct: 665 PPDATIWGALL 675


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/609 (40%), Positives = 365/609 (59%), Gaps = 22/609 (3%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           L + +C +G          ++PN    TY ++L +C   ++L     VH+ +   G + D
Sbjct: 116 LFREMCHEG----------VQPNAG--TYMIILKACASLSALKWGKEVHACIRHGGLESD 163

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             + T L+ +Y    S+++AR +FD      I  W  +  A   +G G+E   L  +M  
Sbjct: 164 VRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQ 223

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
            G   + +  TY  +L AC +       LK  K +H   L  G    V + T L+ MYA+
Sbjct: 224 EG--FKPNAITYVSILNACASEGA----LKWVKRVHRHALDAGLELDVRVGTALVQMYAK 277

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC-PNSVTM 293
            G +  A  VF +M V++VVSW+ MI  +A +G   EA +LF +M  E    C P+++  
Sbjct: 278 SGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEG---CKPDAIMF 334

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
           +S+L ACA+  ALE  K IH + L  GL+  + V +ALV MY++ G ++  + VFD M  
Sbjct: 335 LSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKV 394

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           R+VVSWN++IS    HG G  A+++F+ M  HGV P  ++FV+VL ACSHAGLV+EG+  
Sbjct: 395 RNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQ 454

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
           + +M + + I P V H  CMVDLLGRA +L EA   I+++ ++P    WG+LLGSCR + 
Sbjct: 455 YLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYG 514

Query: 474 NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI 533
           NVEL E  +K   +L+P NA  YVLL+++YA A  WD V  V+ ++  RG++K PGRS I
Sbjct: 515 NVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWI 574

Query: 534 EVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG 593
           EV  K++ F+  D  HP+ ++++     +  ++K +GY+P T++VL + + ++KE  +  
Sbjct: 575 EVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICS 634

Query: 594 HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
           HSEKLA+ +GL++T  G  IR+ KNLR+C DCH  TK ISK   +EI+VRD NRFHHF++
Sbjct: 635 HSEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKD 694

Query: 654 GVCSCGDYW 662
           GVCSCGDYW
Sbjct: 695 GVCSCGDYW 703



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/326 (34%), Positives = 174/326 (53%), Gaps = 8/326 (2%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  +L  C     L  A  VH  +  +  +Q+  ++  L++VY     + +AR VFD   
Sbjct: 31  YVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALV 90

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           +++   WNA+          E+ + L+R M     G++ +  TY  +LKAC +     S 
Sbjct: 91  KKSGASWNAMIAGYVEHKHAEDAMRLFREM--CHEGVQPNAGTYMIILKACAS----LSA 144

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           LK GKE+HA +   G    V + T L+ MY + G +  A  +F  +   +++SW+ MI  
Sbjct: 145 LKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGA 204

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           YA++G   EA  L  +  ME     PN++T VS+L ACA+  AL+  K +H + L  GL+
Sbjct: 205 YAQSGNGKEAYRLMLQ--MEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLE 262

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             + V +ALV MYA+ G ++  + VFD M  RDVVSWN +I ++  HG G +A  +F +M
Sbjct: 263 LDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQM 322

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVE 408
              G  P  I F+S+L AC+ AG +E
Sbjct: 323 QTEGCKPDAIMFLSILNACASAGALE 348



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 133/237 (56%), Gaps = 6/237 (2%)

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           MN    G+ +D F Y  VLK C+        L   K++H  +++       H+M  L+ +
Sbjct: 17  MNRLQRGLITDSFMYVEVLKRCLKQK----DLMAAKQVHDCIIKSRMEQNAHVMNNLLHV 72

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           Y   G +  A  VF  +  K+  SW+AMIA Y  +  A +A+ LFREM  E   + PN+ 
Sbjct: 73  YIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEG--VQPNAG 130

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T + +L+ACA+L+AL+ GK +H  I   GL+S + V +AL+ MY +CG +   + +FD++
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL 190

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
              D++SW  +I +Y   G G +A ++  +M   G  P+ I++VS+L AC+  G ++
Sbjct: 191 MNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALK 247



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           L  +S   V VL+ C     L   K +H  I++  ++    V++ L+ +Y  CG+L+  +
Sbjct: 24  LITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEAR 83

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
           CVFD + K+   SWN++I+ Y  H +   A+++F+EM + GV P+  +++ +L AC+   
Sbjct: 84  CVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLS 143

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
            ++ GK +   +R   +    V     ++ + G+   + EA +I ++L +      W  +
Sbjct: 144 ALKWGKEVHACIRHGGL-ESDVRVGTALLRMYGKCGSINEARRIFDNL-MNHDIISWTVM 201

Query: 466 LGSCRIHCNVELAERASKRLFELEPT----NAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           +G+     N    + A + + ++E      NA  YV + +  A+      VKRV R    
Sbjct: 202 IGAYAQSGN---GKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALD 258

Query: 522 RGLQ 525
            GL+
Sbjct: 259 AGLE 262


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/621 (39%), Positives = 383/621 (61%), Gaps = 17/621 (2%)

Query: 53   NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
            N +I  L + G+  +AL   S    +   PT+ ++   + SC+    L      H     
Sbjct: 1984 NSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFV 2043

Query: 109  NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
             GF+ D F+ + LI++YS    + DAR +FD+   R +  W ++        + +  L L
Sbjct: 2044 FGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLL 2103

Query: 169  YRRM------NGTGTGIRSDRFTYTYVLKACV-ASSCGFSLLKHGKEIHASVLRHGYNGI 221
            ++           G  +  D      VL AC   S  G +     + +H  V++ G++G 
Sbjct: 2104 FKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGIT-----EGVHGFVVKKGFDGS 2158

Query: 222  VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
            + +  TL+D YA+ G  + +  VF  M  K+ +SW++MIA YA++G++ EALE+F  M+ 
Sbjct: 2159 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVR 2218

Query: 282  ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
                +  N+VT+ +VL ACA   AL  GK IH  +++  L+  + V ++++ MY +CG++
Sbjct: 2219 HV-GVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRV 2277

Query: 342  ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
            E+ +  FD M +++V SW ++++ YG+HG   +A+ IF +M+  GV P+ I+FVSVL AC
Sbjct: 2278 EMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAAC 2337

Query: 402  SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
            SHAGLVEEG   F +M+ ++ I P +EHY CMVDL GRA  L EA  +I+ ++++P   V
Sbjct: 2338 SHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVV 2397

Query: 462  WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
            WGSLLG+CRIH NV+L E A+++LFEL+P N G YVLL+++YA A  W +V+R++ L++ 
Sbjct: 2398 WGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKN 2457

Query: 522  RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
            R L K PG S +E+K +++ F+  D+ HP  E ++  L  L+ E+++ GYVP    VL+D
Sbjct: 2458 RQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHD 2517

Query: 582  LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
            +D EEKE I+  HSEKLAVAFG++N++ G TI I KNLR+C DCH+  K ISK  +++ +
Sbjct: 2518 VDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFV 2577

Query: 642  VRDVNRFHHFRNGVCSCGDYW 662
            VRD  RFHHF++GVCSCGDYW
Sbjct: 2578 VRDSKRFHHFKDGVCSCGDYW 2598



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 214/400 (53%), Gaps = 42/400 (10%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR 144
            LL +C +   L     +H+ +  +G   D  L  KLI++YS    +  A  +F + +  
Sbjct: 32  FLLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 145 TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK 204
             + WN + RA T+ G  E+ L LY+ M     GI +D+FT+ +V+KAC      F  + 
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNM--VCQGIAADKFTFPFVIKACT----NFLSID 142

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-------------- 250
            GK +H S++++G++G V +   LID Y + G   +A  VF +M V              
Sbjct: 143 LGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLI 202

Query: 251 -----------------KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
                            KNVVSW+AMI  Y RN    EALELF+ M  ++ ++ PN  TM
Sbjct: 203 SCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM--QAENIFPNEYTM 260

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
           VS+++AC  +  L  G+ IH Y ++  ++  + + +AL+ MY++CG ++    VF+ M +
Sbjct: 261 VSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPR 320

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           + + +WNS+I+S GVHG G +A+ +F EM    V P  I+F+ VL AC H   V+EG   
Sbjct: 321 KSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAY 380

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           F  M + + I P  EHY CM +L  R+N L+EA K  +++
Sbjct: 381 FTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 130/299 (43%), Gaps = 48/299 (16%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
           + T+  ++ +CT+  S+     VH  L   GF  D F+   LI+ Y        A  VF+
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 140 KTRRRTIYVWNALFRALTLAG-------------------------------RGEEVLEL 168
           K R R +  W  +   L   G                               + EE LEL
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           ++RM      I  + +T   ++KAC        +L  G+ IH   +++     V++ T L
Sbjct: 245 FKRMQ--AENIFPNEYTMVSLIKACTE----MGILTLGRGIHDYAIKNCIEIGVYLGTAL 298

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY++ G +  A  VF  M  K++ +W++MI     +G+  EAL LF E  ME  ++ P
Sbjct: 299 IDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSE--MERVNVKP 356

Query: 289 NSVTMVSVLQACAALAALEQG-----KMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
           +++T + VL AC  +  +++G     +M   Y    G+  I      +  +YAR   L+
Sbjct: 357 DAITFIGVLCACVHIKNVKEGCAYFTRMTQHY----GIAPIPEHYECMTELYARSNNLD 411



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 10/170 (5%)

Query: 241  AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
            A + +  +   NV SW+++IA  AR G + EAL  F    +    L P   +    +++C
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSS--LRKLGLIPTRSSFPCTIKSC 2025

Query: 301  AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
            +AL  L  G+M H      G ++ L V SAL+ MY++CG+L+  + +FD +  R+VVSW 
Sbjct: 2026 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWT 2085

Query: 361  SLISSYGVHGYGGKAIQIFKEMIY--------HGVSPSPISFVSVLGACS 402
            S+I+ Y  +     A+ +FK+ +         + V    +  VSVL ACS
Sbjct: 2086 SMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 2135



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P ++T   L+ +CT    L+    +H +   N  +   +L T LI++YS   S+ DA  V
Sbjct: 255 PNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEV 314

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           F+   R+++  WN++  +L + G G+E L L+  M      ++ D  T+  VL ACV
Sbjct: 315 FETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEME--RVNVKPDAITFIGVLCACV 369


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/586 (41%), Positives = 366/586 (62%), Gaps = 11/586 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L +C    +L     VH+     GFD+   + T +++VY    +VD AR V
Sbjct: 325 PDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKV 384

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD  + R    WNA+ +     G   E L L++RM G G  +     T   VL A  A  
Sbjct: 385 FDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDV-----TDVSVLAALHA-- 437

Query: 198 CG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           CG    L  G+ +H  ++R G    V++M  LI MY +      A  VF ++  K  VSW
Sbjct: 438 CGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSW 497

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AMI    +NG + +A+ LF  M +E  ++ P+S T+VS++ A A ++   Q + IHGY 
Sbjct: 498 NAMILGCTQNGSSEDAVRLFSRMQLE--NVKPDSFTLVSIIPALADISDPLQARWIHGYS 555

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           +R  LD  + V++AL+ MYA+CG++ + + +F+    R V++WN++I  YG HG G  A+
Sbjct: 556 IRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAV 615

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           ++F+EM   G  P+  +F+SVL ACSHAGLV+EG+  F SM++++ + P +EHY  MVDL
Sbjct: 616 ELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDL 675

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA KL EA   I+ + +EPG  V+G++LG+C++H NVELAE +++R+FELEP     +
Sbjct: 676 LGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYH 735

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLLA++YA A +W +V RV+  +E +GLQK PG S +++K ++++F S    H Q + ++
Sbjct: 736 VLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIY 795

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
           A L  L  E+K  GYVP T  + +D++ + K +++  HSEKLA+A+GLI T+ G TI+I 
Sbjct: 796 ARLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIK 854

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C+DCH+ TK IS    +EI++RD+ RFHHF++G CSCGDYW
Sbjct: 855 KNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 6/237 (2%)

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T  S+L+ CAA A L  G+ +H  +  RGL       +AL  MYA+C +    + VFD M
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEG 410
             RD V+WN+L++ Y  +G    A+ +   M    G  P  ++ VSVL AC+ A  +   
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           + +  +          V     ++D+  +   ++ A K+ + ++ +     W +++    
Sbjct: 347 REV-HAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQ-DRNSVSWNAMIKGYA 404

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM--WDEVKRVKRLLEARGLQ 525
            + +   A    KR+   E  +  +  +LA ++A  ++   DE +RV  LL   GL+
Sbjct: 405 ENGDATEALALFKRMVG-EGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLE 460


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 246/640 (38%), Positives = 373/640 (58%), Gaps = 39/640 (6%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           I  L     L+  L  LS    P   +Y  +    T  N L     VH+H+   G     
Sbjct: 46  ISPLTISATLQNLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTA 105

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
            + +K++  Y+    +D +  VF+     +  ++N++ RA    G  E  +  Y  M+  
Sbjct: 106 LVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSW 165

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
           G     D FT+ +VLK    SS     +  GK +H  +LR G    +++ T+LI +Y + 
Sbjct: 166 G--FTGDYFTFPFVLK----SSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKC 219

Query: 236 GCVMYAGFVFSQMAVK-------------------------------NVVSWSAMIACYA 264
           G +  AG VF  M ++                               N+VSW+ MI+ Y+
Sbjct: 220 GEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYS 279

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           ++G+A +AL LF EM+ E   + PN VT++SVL ACA L+ LE+G+ IH    R GL+S 
Sbjct: 280 QSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSN 339

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             V+ AL  MYA+CG L   +  FD +++  +++++WN++I++Y  +G+G +A+  F+EM
Sbjct: 340 ASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREM 399

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
           I  G+ P  I+F  +L  CSH+GLV+ G   F  M   + I P VEHYAC+ DLLGRA +
Sbjct: 400 IQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGR 459

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           L EA+K++ ++ +  GP +WGSLL +CR H N+E+AE A+++LF LEP N GNYVLL+++
Sbjct: 460 LAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNM 519

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           YA A  W EV +++ +++++G +K PG S IE+  K + F+  D  HPQ ++++  L  L
Sbjct: 520 YAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEAL 579

Query: 563 SAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLC 622
             +MK  GY P T  VL+D+  EEKE  ++ HSEKLAVAFG++NT     +R+TKNLR+C
Sbjct: 580 PEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRIC 639

Query: 623 EDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            DCH+   FIS+   +E++VRD+NRFHHF+ G CSCGDYW
Sbjct: 640 GDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/636 (40%), Positives = 383/636 (60%), Gaps = 34/636 (5%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSH-LT 107
           N +I  L + G   +A++VL    S+   P   T+   L +C+    L+    +H+  L 
Sbjct: 251 NTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLK 310

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR--RTIYVWNALFRALTLAGRGEEV 165
           D     + F+ + L+++Y+  + V  AR VFD      R + +WNA+      AG  EE 
Sbjct: 311 DADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEA 370

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE-IHASVLRHGYNGIVHI 224
           LEL+ RM     G      T + VL AC A S GF+    GKE +H  V++ G  G   +
Sbjct: 371 LELFSRMEAE-AGCAPSETTMSGVLPAC-ARSEGFA----GKEAMHGYVVKRGMAGNRFV 424

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM--- 281
              L+DMYAR G +  A  +F+ +  ++VVSW+ +I      G A EA +L  EM +   
Sbjct: 425 QNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSP 484

Query: 282 -----------ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
                      E+H   PN++T++++L  CAALAA  +GK IHGY +R  L+S + V SA
Sbjct: 485 SPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSA 544

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSP 389
           LV MYA+CG L   + VFD + +R+V++WN LI +YG+HG G +A+ +F EM   G  +P
Sbjct: 545 LVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATP 604

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
           + ++F++ L ACSH+GLV+ G  LF  M ++H ++P+ + +AC+VD+LGRA +L+EA  I
Sbjct: 605 NEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSI 664

Query: 450 IEDLRIEPGPK---VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
           I  +  EPG +    W SLLG+CR+H NVEL E A++RLFELEP  A +YVLL ++Y+AA
Sbjct: 665 ITSM--EPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAA 722

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
            MWD+   V+  +  +G+ K PG S IE+   ++ F++ +  HP   ++HA +  L   M
Sbjct: 723 GMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERM 782

Query: 567 KEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
           + +GY P T  VL+D+D +EK  ++  HSEKLA+AFGL+    G  IR+ KNLR+C DCH
Sbjct: 783 RREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCH 842

Query: 627 SFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              KF+SK   ++I++RDV RFHHFR+G CSCGDYW
Sbjct: 843 EAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 197/439 (44%), Gaps = 48/439 (10%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQH-----TYELLLLSCTHH--------NSLSDA 99
           N LI +LC      +ALD L       +H     T   +LL+C+H            + A
Sbjct: 137 NSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHA 196

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR------TIYVWNALF 153
             +     D G ++ PF    L+++Y+    VDDA+ +F  T          +  WN + 
Sbjct: 197 FALKRGFLDEGRERFPF--NALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMI 254

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
             L   GR  E +E+   M     G+R D  T+   L AC        +L  G+E+HA V
Sbjct: 255 SLLVQGGRCAEAVEVLYDM--VSLGVRPDGVTFASALPACSR----LEMLALGREMHAVV 308

Query: 214 LRHG-YNGIVHIMTTLIDMYARFGCVMYAGFVFSQM--AVKNVVSWSAMIACYARNGMAF 270
           L+         + + L+DMYA    V  A  VF  +    + +  W+AMI  YA+ GM  
Sbjct: 309 LKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDE 368

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
           EALELF  M  E+    P+  TM  VL ACA        + +HGY+++RG+     V +A
Sbjct: 369 EALELFSRMEAEA-GCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNA 427

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY------ 384
           L+ MYAR G++++ + +F  +D RDVVSWN+LI+   V G+  +A Q+  EM        
Sbjct: 428 LMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPS 487

Query: 385 ----------HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
                     H   P+ I+ +++L  C+       GK +       H +   +   + +V
Sbjct: 488 SSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEI-HGYAVRHALESDIAVGSALV 546

Query: 435 DLLGRANKLEEAAKIIEDL 453
           D+  +   L  +  + + L
Sbjct: 547 DMYAKCGCLAASRAVFDRL 565



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 143/281 (50%), Gaps = 30/281 (10%)

Query: 209 IHASVLRHGYNGIVH-----IMTTLIDMYARFGCVMYAGFVFSQMA--VKNVVSWSAMIA 261
           +HA+ LR     ++H     +   L+  YAR G +  A  +F+  A  +++ VS++++I+
Sbjct: 85  LHAAALR---RALLHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLIS 141

Query: 262 CYARNGMAFEALELFREMIMES-HDLCPNSVTMVSVLQACAALAALEQ---GKMIHGYIL 317
                     AL+  R+M+ E  HD+  +S T+VSVL AC+ L   +    G+  H + L
Sbjct: 142 ALCLFRQWERALDALRDMLAEGRHDV--SSFTLVSVLLACSHLPGDDGRRLGREAHAFAL 199

Query: 318 RRG-LDS---ILPVVSALVTMYARCGKLELGQCVFDHMDKR------DVVSWNSLISSYG 367
           +RG LD      P  +AL++MYAR G ++  Q +F            DVV+WN++IS   
Sbjct: 200 KRGFLDEGRERFPF-NALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLV 258

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
             G   +A+++  +M+  GV P  ++F S L ACS   ++  G+ +   + K+  +  + 
Sbjct: 259 QGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANS 318

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV--WGSLL 466
              + +VD+     K+  A ++  D+  EP  ++  W +++
Sbjct: 319 FVASALVDMYAGNEKVASARRVF-DMVPEPSRQLGMWNAMI 358


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/627 (39%), Positives = 392/627 (62%), Gaps = 24/627 (3%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N ++ SLC+   L +AL+ L       +EP+  + T   +L +C+H   L     +H++ 
Sbjct: 271 NTVLSSLCQNEQLLEALEYLREMVLEGVEPD--EFTISSVLPACSHLEMLRTGKELHAYA 328

Query: 107 TDNG-FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
             NG  D++ F+ + L+++Y +   V   R VFD    R I +WNA+    +     +E 
Sbjct: 329 LKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEA 388

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L L+  M  +  G+ ++  T   V+ ACV S          + IH  V++ G +    + 
Sbjct: 389 LLLFIGMEESA-GLLANSTTMAGVVPACVRSGA----FSRKEAIHGFVVKRGLDRDRFVQ 443

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI-MESH 284
            TL+DMY+R G +  A  +F +M  +++V+W+ MI  Y  +    +AL L  +M  +E  
Sbjct: 444 NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERK 503

Query: 285 --------DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
                    L PNS+T++++L +CAAL+AL +GK IH Y ++  L + + V SALV MYA
Sbjct: 504 VSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYA 563

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CG L++ + VFD + +++V++WN +I +YG+HG G +AI + + M+  GV P+ ++F+S
Sbjct: 564 KCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 623

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI 455
           V  ACSH+G+V+EG  +F  M+ ++ + PS +HYAC+VDLLGRA +++EA +++  + R 
Sbjct: 624 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 683

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
                 W SLLG+ RIH N+E+ E A++ L +LEP  A +YVLLA++Y++A +WD+   V
Sbjct: 684 FNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEV 743

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT 575
           +R ++ +G++K PG S IE   +++ FV+ D  HPQ E+L   L  L   M+++GYVP T
Sbjct: 744 RRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDT 803

Query: 576 KVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKF 635
             VL++++ +EKE ++ GHSEKLA+AFG++NTS G  IR+ KNLR+C DCH  TKFISK 
Sbjct: 804 SCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKI 863

Query: 636 ANKEILVRDVNRFHHFRNGVCSCGDYW 662
            ++EI++RDV RFH F+NG CSCGDYW
Sbjct: 864 VDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 209/457 (45%), Gaps = 22/457 (4%)

Query: 7   PQTPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKN-----ELIQSLCK 61
           P   QLL    H +    L   P+S    V+   S  P+   S++++     +L++S  +
Sbjct: 16  PLPSQLLPFSRHKHPYL-LRATPTSATEDVASAVSGAPSIFISQSRSPEWWIDLLRSKVR 74

Query: 62  QGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL 117
              LR+A+    D++ +   P  + +  LL +      +     +H+H+   G+  D   
Sbjct: 75  SNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVT 134

Query: 118 VTK-LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           V   L+N+Y           VFD+   R    WN+L  +L    + E  LE +R M    
Sbjct: 135 VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM--LD 192

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG-YNGIVHIMTTLIDMYARF 235
             +    FT   V+ AC        L+  GK++HA  LR G  N    I+ TL+ MY + 
Sbjct: 193 ENVEPSSFTLVSVVTACSNLPMPEGLMM-GKQVHAYGLRKGELNSF--IINTLVAMYGKL 249

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G +  +  +      +++V+W+ +++   +N    EALE  REM++E  +  P+  T+ S
Sbjct: 250 GKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVE--PDEFTISS 307

Query: 296 VLQACAALAALEQGKMIHGYILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           VL AC+ L  L  GK +H Y L+ G LD    V SALV MY  C ++  G+ VFD M  R
Sbjct: 308 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR 367

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKML 413
            +  WN++I+ Y  + +  +A+ +F  M    G+  +  +   V+ AC  +G     + +
Sbjct: 368 KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 427

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
              + K  + R        M D+  R  K++ A +I 
Sbjct: 428 HGFVVKRGLDRDRFVQNTLM-DMYSRLGKIDIAMRIF 463


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/627 (39%), Positives = 392/627 (62%), Gaps = 24/627 (3%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N ++ SLC+   L +AL+ L       +EP+  + T   +L +C+H   L     +H++ 
Sbjct: 271 NTVLSSLCQNEQLLEALEYLREMVLEGVEPD--EFTISSVLPACSHLEMLRTGKELHAYA 328

Query: 107 TDNG-FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
             NG  D++ F+ + L+++Y +   V   R VFD    R I +WNA+    +     +E 
Sbjct: 329 LKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEA 388

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L L+  M  +  G+ ++  T   V+ ACV S          + IH  V++ G +    + 
Sbjct: 389 LLLFIGMEESA-GLLANSTTMAGVVPACVRSGA----FSRKEAIHGFVVKRGLDRDRFVQ 443

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI-MESH 284
            TL+DMY+R G +  A  +F +M  +++V+W+ MI  Y  +    +AL L  +M  +E  
Sbjct: 444 NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERK 503

Query: 285 --------DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
                    L PNS+T++++L +CAAL+AL +GK IH Y ++  L + + V SALV MYA
Sbjct: 504 VSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYA 563

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CG L++ + VFD + +++V++WN +I +YG+HG G +AI + + M+  GV P+ ++F+S
Sbjct: 564 KCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 623

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI 455
           V  ACSH+G+V+EG  +F  M+ ++ + PS +HYAC+VDLLGRA +++EA +++  + R 
Sbjct: 624 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 683

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
                 W SLLG+ RIH N+E+ E A++ L +LEP  A +YVLLA++Y++A +WD+   V
Sbjct: 684 FNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEV 743

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT 575
           +R ++ +G++K PG S IE   +++ FV+ D  HPQ E+L   L  L   M+++GYVP T
Sbjct: 744 RRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDT 803

Query: 576 KVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKF 635
             VL++++ +EKE ++ GHSEKLA+AFG++NTS G  IR+ KNLR+C DCH  TKFISK 
Sbjct: 804 SCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKI 863

Query: 636 ANKEILVRDVNRFHHFRNGVCSCGDYW 662
            ++EI++RDV RFH F+NG CSCGDYW
Sbjct: 864 VDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 209/457 (45%), Gaps = 22/457 (4%)

Query: 7   PQTPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKN-----ELIQSLCK 61
           P   QLL    H +    L   P+S    V+   S  P+   S++++     +L++S  +
Sbjct: 16  PFPSQLLPFSRHKHPYL-LRATPTSATEDVASAVSGAPSIFISQSRSPEWWIDLLRSKVR 74

Query: 62  QGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL 117
              LR+A+    D++ +   P  + +  LL +      +     +H+H+   G+  D   
Sbjct: 75  SNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVT 134

Query: 118 VTK-LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           V   L+N+Y           VFD+   R    WN+L  +L    + E  LE +R M    
Sbjct: 135 VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM--LD 192

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG-YNGIVHIMTTLIDMYARF 235
             +    FT   V+ AC        L+  GK++HA  LR G  N    I+ TL+ MY + 
Sbjct: 193 ENVEPSSFTLVSVVTACSNLPMPEGLMM-GKQVHAYGLRKGELNSF--IINTLVAMYGKL 249

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G +  +  +      +++V+W+ +++   +N    EALE  REM++E  +  P+  T+ S
Sbjct: 250 GKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVE--PDEFTISS 307

Query: 296 VLQACAALAALEQGKMIHGYILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           VL AC+ L  L  GK +H Y L+ G LD    V SALV MY  C ++  G+ VFD M  R
Sbjct: 308 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR 367

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKML 413
            +  WN++I+ Y  + +  +A+ +F  M    G+  +  +   V+ AC  +G     + +
Sbjct: 368 KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 427

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
              + K  + R        M D+  R  K++ A +I 
Sbjct: 428 HGFVVKRGLDRDRFVQNTLM-DMYSRLGKIDIAMRIF 463


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 268/686 (39%), Positives = 401/686 (58%), Gaps = 40/686 (5%)

Query: 3   ALQSPQTPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKN--------- 53
           +LQ+ Q P  ++ P  +   +  PPKP+S     S ++++   +L SR ++         
Sbjct: 25  SLQT-QPPPSIQKPTASPLTSKTPPKPTSP----SRSTASWVDALRSRTRSNDFREAIST 79

Query: 54  --ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD--- 108
             E+  S  +  N      + ++       T E +  +       S ++ V + L +   
Sbjct: 80  YIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYG 139

Query: 109 --NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
              G     F    L+ +Y+    VDD++ +F+    R +  WN +  + + + R  E L
Sbjct: 140 KCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEAL 199

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH--- 223
             +R M     G+  D  T   VL AC         L  GKEIHA VLR+  N ++    
Sbjct: 200 AFFRLM--VLEGVELDGVTIASVLPAC----SHLERLDVGKEIHAYVLRN--NDLIENSF 251

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           + + L+DMY     V     VF  +  + +  W+AMI+ YARNG+  +AL LF EMI + 
Sbjct: 252 VGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMI-KV 310

Query: 284 HDLCPNSVTMVSVLQACA-ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
             L PN+ TM SV+ AC  +LAA+ +GK IH Y +R  L S + V SALV MYA+CG L 
Sbjct: 311 AGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLN 370

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-----VSPSPISFVSV 397
           L + VF+ M  ++V++WN LI + G+HG G +A+++FK M+          P+ ++F++V
Sbjct: 371 LSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITV 430

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE- 456
             ACSH+GL+ EG  LF  M+ +H + P+ +HYAC+VDLLGRA +LEEA +++  +  E 
Sbjct: 431 FAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEF 490

Query: 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516
                W SLLG+CRIH NVEL E A+K L  LEP  A +YVLL+++Y++A +W++   V+
Sbjct: 491 DKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVR 550

Query: 517 RLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTK 576
           + +   G++K PG S IE + +++ F++ D  HPQ EQLH  L  LS +M+++GYVP T 
Sbjct: 551 KNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTS 610

Query: 577 VVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFA 636
            VL+++D +EKE ++ GHSEKLA+AFG++NT  G TIR+ KNLR+C DCH+ TKFISK  
Sbjct: 611 CVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIM 670

Query: 637 NKEILVRDVNRFHHFRNGVCSCGDYW 662
            +EI+VRDV RFHHF+ G CSCGDYW
Sbjct: 671 EREIIVRDVRRFHHFKEGTCSCGDYW 696


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/614 (39%), Positives = 371/614 (60%), Gaps = 13/614 (2%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++    + G  R+A+ V+         P   T   +L +     +L    ++H +   
Sbjct: 212 NTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFR 271

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF+    + T +++ Y    SV  AR VF     R +  WN +       G  EE    
Sbjct: 272 AGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFAT 331

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M     G+     +    L AC         L+ G+ +H  +        V +M +L
Sbjct: 332 FLKM--LDEGVEPTNVSMMGALHAC----ANLGDLERGRYVHRLLDEKKIGFDVSVMNSL 385

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MY++   V  A  VF  +  K VV+W+AMI  YA+NG   EAL LF EM  +SHD+ P
Sbjct: 386 ISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEM--QSHDIKP 443

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +S T+VSV+ A A L+   Q K IHG  +R  +D  + V +AL+  +A+CG ++  + +F
Sbjct: 444 DSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLF 503

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M +R V++WN++I  YG +G+G +A+ +F EM    V P+ I+F+SV+ ACSH+GLVE
Sbjct: 504 DLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVE 563

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG   FESM++ + + P+++HY  MVDLLGRA +L++A K I+D+ ++PG  V G++LG+
Sbjct: 564 EGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGA 623

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH NVEL E+ +  LF+L+P + G +VLLA++YA+A MWD+V RV+  +E +G+QK P
Sbjct: 624 CRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTP 683

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +E++ ++++F S    HPQ ++++A L  L  EMK  GYVP T  + +D++ + KE
Sbjct: 684 GCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSI-HDVEEDVKE 742

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           +++  HSE+LA+AFGL+NT  G  I I KNLR+C DCH  TK+IS    +EI+VRD+ RF
Sbjct: 743 QLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRF 802

Query: 649 HHFRNGVCSCGDYW 662
           HHF+NG+CSCGDYW
Sbjct: 803 HHFKNGICSCGDYW 816



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 200/381 (52%), Gaps = 24/381 (6%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
           +H   +LL  CT   SL +   +   +  NGF  +    TKLI+++  F+S+ +A  VF+
Sbjct: 44  RHPSAILLELCT---SLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFE 100

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR-----FTYTYVLKACV 194
               +   +++ + +         + +  Y RM       R D      + +TY+L+   
Sbjct: 101 PVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERM-------RCDEVMPVVYDFTYLLQL-- 151

Query: 195 ASSCGFSL-LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
               G +L L+ G+EIH  V+ +G+   +  MT ++++YA+   +  A  +F +M  +++
Sbjct: 152 ---SGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDL 208

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+ ++A YA+NG A  A+++  +  M+     P+S+T+VSVL A A L AL  G+ IH
Sbjct: 209 VSWNTVVAGYAQNGFARRAVQVVLQ--MQEAGQKPDSITLVSVLPAVADLKALRIGRSIH 266

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
           GY  R G + ++ V +A++  Y +CG +   + VF  M  R+VVSWN++I  Y  +G   
Sbjct: 267 GYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESE 326

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A   F +M+  GV P+ +S +  L AC++ G +E G+ +   +  E  I   V     +
Sbjct: 327 EAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYV-HRLLDEKKIGFDVSVMNSL 385

Query: 434 VDLLGRANKLEEAAKIIEDLR 454
           + +  +  +++ AA +  +L+
Sbjct: 386 ISMYSKCKRVDIAASVFGNLK 406


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/661 (38%), Positives = 380/661 (57%), Gaps = 44/661 (6%)

Query: 37  SLNSSTTPTSLSS----RNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTH 92
           +LN +   T+LS     R   E+I+  C+Q  L++A+D L   P P+   Y  L+ +C  
Sbjct: 16  NLNLNPKDTTLSHHSEHRRFEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLR 75

Query: 93  HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
           H  L     VH+H   + F     +  +LI++Y+   S+ DA+ +FD+  ++ +  WN +
Sbjct: 76  HRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTM 135

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV------------------ 194
                  GR E+  +L+  M         D F++  V+   V                  
Sbjct: 136 ISGYANVGRIEQARKLFDEMP------HRDNFSWNAVISGYVSQGWYMEALDLFRMMQEN 189

Query: 195 -ASSCGF-------------SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            +S+C               S L+ GKEIH  ++R G      + T L+D+Y + G +  
Sbjct: 190 ESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNE 249

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  +F QMA K++VSW+ MI     +G   E   LFR+++     + PN  T   VL AC
Sbjct: 250 ARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLM--GSGVRPNEYTFAGVLNAC 307

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           A LAA + GK +HGY+ R G D      SALV +Y++CG  E  + VF+ M + D+VSW 
Sbjct: 308 ADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWT 367

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           SLI  Y  +G    A+Q F+ ++  G  P  I+FV VL AC+HAGLV+ G   F S++++
Sbjct: 368 SLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEK 427

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           H +  + +HYAC++DLL R+ + +EA  II+++ ++P   +W SLLG CRIH N+ELAER
Sbjct: 428 HGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAER 487

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
           A+K LFELEP N   Y+ L+++YA A +W E  +V+  ++ RG+ K PG+S IE+KR+++
Sbjct: 488 AAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVH 547

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
            F+  D  HP+   +H  L  LS +MKE+GYV  T  VL+D++ E+KE+ +  HSEKLAV
Sbjct: 548 VFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAV 607

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           AFG+I+TS G  I++ KNLR C DCH+  K+ISK   ++I+VRD NRFH F +G CSC D
Sbjct: 608 AFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKD 667

Query: 661 Y 661
           Y
Sbjct: 668 Y 668


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/627 (39%), Positives = 392/627 (62%), Gaps = 24/627 (3%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N ++ SLC+   L +AL+ L       +EP+  + T   +L +C+H   L     +H++ 
Sbjct: 184 NTVLSSLCQNEQLLEALEYLREMVLEGVEPD--EFTISSVLPACSHLEMLRTGKELHAYA 241

Query: 107 TDNG-FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
             NG  D++ F+ + L+++Y +   V   R VFD    R I +WNA+    +     +E 
Sbjct: 242 LKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEA 301

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L L+  M  +  G+ ++  T   V+ ACV S          + IH  V++ G +    + 
Sbjct: 302 LLLFIGMEES-AGLLANSTTMAGVVPACVRSGA----FSRKEAIHGFVVKRGLDRDRFVQ 356

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI-MESH 284
            TL+DMY+R G +  A  +F +M  +++V+W+ MI  Y  +    +AL L  +M  +E  
Sbjct: 357 NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERK 416

Query: 285 --------DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
                    L PNS+T++++L +CAAL+AL +GK IH Y ++  L + + V SALV MYA
Sbjct: 417 VSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYA 476

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CG L++ + VFD + +++V++WN +I +YG+HG G +AI + + M+  GV P+ ++F+S
Sbjct: 477 KCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 536

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI 455
           V  ACSH+G+V+EG  +F  M+ ++ + PS +HYAC+VDLLGRA +++EA +++  + R 
Sbjct: 537 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 596

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
                 W SLLG+ RIH N+E+ E A++ L +LEP  A +YVLLA++Y++A +WD+   V
Sbjct: 597 FNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEV 656

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT 575
           +R ++ +G++K PG S IE   +++ FV+ D  HPQ E+L   L  L   M+++GYVP T
Sbjct: 657 RRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDT 716

Query: 576 KVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKF 635
             VL++++ +EKE ++ GHSEKLA+AFG++NTS G  IR+ KNLR+C DCH  TKFISK 
Sbjct: 717 SCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKI 776

Query: 636 ANKEILVRDVNRFHHFRNGVCSCGDYW 662
            ++EI++RDV RFH F+NG CSCGDYW
Sbjct: 777 VDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 179/383 (46%), Gaps = 14/383 (3%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTK-LINVYSHFD 129
           VL I+P+   + +  LL +      +     +H+H+   G+  D   V   L+N+Y    
Sbjct: 3   VLGIKPD--NYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
                  VFD+   R    WN+L  +L    + E  LE +R M      +    FT   V
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM--LDENVEPSSFTLVSV 118

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHG-YNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           + AC        L+  GK++HA  LR G  N    I+ TL+ MY + G +  +  +    
Sbjct: 119 VTACSNLPMPEGLMM-GKQVHAYGLRKGELNSF--IINTLVAMYGKLGKLASSKVLLGSF 175

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             +++V+W+ +++   +N    EALE  REM++E  +  P+  T+ SVL AC+ L  L  
Sbjct: 176 GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVE--PDEFTISSVLPACSHLEMLRT 233

Query: 309 GKMIHGYILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
           GK +H Y L+ G LD    V SALV MY  C ++  G+ VFD M  R +  WN++I+ Y 
Sbjct: 234 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 293

Query: 368 VHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
            + +  +A+ +F  M    G+  +  +   V+ AC  +G     + +   + K  + R  
Sbjct: 294 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 353

Query: 427 VEHYACMVDLLGRANKLEEAAKI 449
                 M D+  R  K++ A +I
Sbjct: 354 FVQNTLM-DMYSRLGKIDIAMRI 375


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/587 (39%), Positives = 366/587 (62%), Gaps = 9/587 (1%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P + T+  LL + T+   L     VH  + + G + +P + T L+ +Y+    +  AR 
Sbjct: 145 KPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARV 204

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FD+   + +  W  L       G+ +  LEL   M      +  ++ T+  +L+ C   
Sbjct: 205 IFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAE--VAPNKITFASILQGCTTP 262

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           +     L+HGK++H  +++ GY   + ++ +LI MY + G +  A  +FS +  ++VV+W
Sbjct: 263 AA----LEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTW 318

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AM+  YA+ G   EA+ LFR M  +   + P+ +T  SVL +C++ A L++GK IH  +
Sbjct: 319 TAMVTGYAQLGFHDEAINLFRRM--QQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQL 376

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY-GVHGYGGKA 375
           +  G +  + + SALV+MYA+CG ++    VF+ M +R+VV+W ++I+     HG   +A
Sbjct: 377 VHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREA 436

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           ++ F +M   G+ P  ++F SVL AC+H GLVEEG+  F SM  ++ I+P VEHY+C VD
Sbjct: 437 LEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVD 496

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495
           LLGRA  LEEA  +I  +   PGP VWG+LL +CR+H +VE  ERA++ + +L+P + G 
Sbjct: 497 LLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGA 556

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           YV L+ +YAAA  +++ ++V++++E R + K PG+S IEV  K++ F   D+ HP+ EQ+
Sbjct: 557 YVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQI 616

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
           +  L  L+ ++KE GYVP T+ VL+D+D E+KERI+  HSE+LA+ +GL+ T  G  IRI
Sbjct: 617 YVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGMPIRI 676

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C DCH+ TKFISK   +EI+ RD  RFHHF +GVCSCGD+W
Sbjct: 677 VKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 193/366 (52%), Gaps = 12/366 (3%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTY----ELLLLSCTHHNSLSDALNVHSHLTDNGF 111
           +  LCK G L++AL +++         Y      LL  C    SL     VH+ +  +G 
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 112 DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR 171
             + +L   L+++Y+   S+ DAR VFD  R R I  W A+  A     +  E  + Y  
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           M   G   + D+ T+  +L A         LL+ G+++H  ++  G      + T+L+ M
Sbjct: 139 MKLAGC--KPDKVTFVSLLNAFTNP----ELLQLGQKVHMEIVEAGLELEPRVGTSLVGM 192

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           YA+ G +  A  +F ++  KNVV+W+ +IA YA+ G    ALEL     M+  ++ PN +
Sbjct: 193 YAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLE--TMQQAEVAPNKI 250

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T  S+LQ C   AALE GK +H YI++ G    L VV++L+TMY +CG LE  + +F  +
Sbjct: 251 TFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDL 310

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             RDVV+W ++++ Y   G+  +AI +F+ M   G+ P  ++F SVL +CS    ++EGK
Sbjct: 311 PHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGK 370

Query: 412 MLFESM 417
            + + +
Sbjct: 371 RIHQQL 376



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 167/322 (51%), Gaps = 15/322 (4%)

Query: 55  LIQSLCKQGNLRQALDVLSI----EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           LI    +QG +  AL++L      E  P + T+  +L  CT   +L     VH ++  +G
Sbjct: 220 LIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSG 279

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           + ++ ++V  LI +Y     +++AR +F     R +  W A+       G  +E + L+R
Sbjct: 280 YGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFR 339

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           RM     GI+ D+ T+T VL +C  SS  F  L+ GK IH  ++  GYN  V++ + L+ 
Sbjct: 340 RMQ--QQGIKPDKMTFTSVLTSC--SSPAF--LQEGKRIHQQLVHAGYNLDVYLQSALVS 393

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMI-ACYARNGMAFEALELFREMIMESHDLCPN 289
           MYA+ G +  A  VF+QM+ +NVV+W+A+I  C A++G   EALE F +  M+   + P+
Sbjct: 394 MYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQ--MKKQGIKPD 451

Query: 290 SVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
            VT  SVL AC  +  +E+G K      L  G+  ++   S  V +  R G LE  + V 
Sbjct: 452 KVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVI 511

Query: 349 DHMDKRDVVS-WNSLISSYGVH 369
             M      S W +L+S+  VH
Sbjct: 512 LSMPFIPGPSVWGALLSACRVH 533



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 151/298 (50%), Gaps = 9/298 (3%)

Query: 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
           L   GR +E L +   M   GT + SD F    +L+ C         L+ G+E+HA++L+
Sbjct: 22  LCKTGRLKEALGIMNTMILQGTRVYSDVFRG--LLQECAR----LRSLEQGREVHAAILK 75

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
            G     ++  TL+ MYA+ G +  A  VF  +  +N+VSW+AMI  +       EA + 
Sbjct: 76  SGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKC 135

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           +  M +      P+ VT VS+L A      L+ G+ +H  I+  GL+    V ++LV MY
Sbjct: 136 YETMKLAGCK--PDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMY 193

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           A+CG +   + +FD + +++VV+W  LI+ Y   G    A+++ + M    V+P+ I+F 
Sbjct: 194 AKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFA 253

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           S+L  C+    +E GK +   + +    R  +     ++ +  +   LEEA K+  DL
Sbjct: 254 SILQGCTTPAALEHGKKVHRYIIQSGYGR-ELWVVNSLITMYCKCGGLEEARKLFSDL 310



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 109/220 (49%), Gaps = 6/220 (2%)

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           ++   + G   EAL +   MI++   +   S     +LQ CA L +LEQG+ +H  IL+ 
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRV--YSDVFRGLLQECARLRSLEQGREVHAAILKS 76

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           G+     + + L++MYA+CG L   + VFD +  R++VSW ++I ++       +A + +
Sbjct: 77  GIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCY 136

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEG-KMLFESMRKEHMIRPSVEHYACMVDLLG 438
           + M   G  P  ++FVS+L A ++  L++ G K+  E +     + P V     +V +  
Sbjct: 137 ETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYA 194

Query: 439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
           +   + + A++I D   E     W  L+        V++A
Sbjct: 195 KCGDISK-ARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVA 233


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/570 (42%), Positives = 359/570 (62%), Gaps = 10/570 (1%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
             L D   +H  +   GF+ D F+   L+++YS F  V DAR +FD    R    WNA+ 
Sbjct: 8   GDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMI 67

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                 G   E L++   M   G  ++ D  T   VL  C       S    GK IH  V
Sbjct: 68  SGYCQNGNAAEALDIADEMRLEG--VKMDAITVASVLPVCAQVGDILS----GKLIHLYV 121

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           ++HG    + +   LI+MYA+FG + +A  VF  + +K+VVSW+ +I  YA+NG+A EA+
Sbjct: 122 IKHGLEFELFVSNALINMYAKFGSLGHAQKVFG-LLIKDVVSWNTLITGYAQNGLASEAI 180

Query: 274 ELFREMIMESHD-LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
           E++  ++ME H+ + PN  T VS+L A + + AL+QG  IHG +++  L S + V + L+
Sbjct: 181 EVY--LLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLI 238

Query: 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI 392
            MY +CGKL+    +F  + +++ V WN++IS YGVHG G KA+++F+EM    V P  I
Sbjct: 239 DMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHI 298

Query: 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           +FVS+L ACSH+GLV + +  F  M +E+ I+PS++HY CMVDL GRA +LE A   I+ 
Sbjct: 299 TFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKK 358

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
           + I+P    WG+LL +CRIH N+EL + AS+RLFE++  N G YVLL+++YA    W+ V
Sbjct: 359 MPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGV 418

Query: 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV 572
             V+ L   RGL+K PG S I +  K+  F + ++ HP+ E+++  L +L++++K  GYV
Sbjct: 419 DDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYV 478

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
           P    VL D++ +EKE I++GHSE+LA+A+G+I+TS    IRI KNLR+C DCH+ TKFI
Sbjct: 479 PDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFI 538

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           S    +EI+VRD +RFHHF+ G CSCGDYW
Sbjct: 539 SIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 154/324 (47%), Gaps = 14/324 (4%)

Query: 53  NELIQSLCKQGNLRQALDV---LSIEPNPTQH-TYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I   C+ GN  +ALD+   + +E       T   +L  C     +     +H ++  
Sbjct: 64  NAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIK 123

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +G + + F+   LIN+Y+ F S+  A+ VF    +  +  WN L       G   E +E+
Sbjct: 124 HGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIKDVV-SWNTLITGYAQNGLASEAIEV 182

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           Y  M      I  ++ T+  +L A   S  G   L+ G  IH  V+++     V + T L
Sbjct: 183 YLLME-EHEEIIPNQGTWVSILPA--YSHVG--ALQQGMRIHGQVIKNCLYSDVFVGTCL 237

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY + G +  A  +F Q+  KN V W+AMI+CY  +G   +ALELFREM  E   + P
Sbjct: 238 IDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAER--VKP 295

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCV 347
           + +T VS+L AC+    +   +     +    G+   L     +V ++ R G+LE+    
Sbjct: 296 DHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNF 355

Query: 348 FDHMD-KRDVVSWNSLISSYGVHG 370
              M  + D  +W +L+++  +HG
Sbjct: 356 IKKMPIQPDASAWGALLNACRIHG 379



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           V++AC  L     GK IH  +L+ G +  + V ++LV MY+R G +   + +FD M  RD
Sbjct: 3   VVKACGDLL---DGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARD 59

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
             SWN++IS Y  +G   +A+ I  EM   GV    I+  SVL  C+  G +  GK++
Sbjct: 60  RGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 246/603 (40%), Positives = 368/603 (61%), Gaps = 27/603 (4%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSH-LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           T   +L +C+H   L     +H++ L +N   ++ F+ + L+++Y +   V+  R VFD 
Sbjct: 299 TIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDH 358

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
              R I +WNA+       G  E+ L L+  M     G+  +  T   V+ ACV      
Sbjct: 359 ILGRRIELWNAMISGYARNGLDEKALILFIEMIKVA-GLLPNTTTMASVMPACVHCEA-- 415

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
               + + IH   ++ G+    ++   L+DMY+R G +  +  +F  M V++ VSW+ MI
Sbjct: 416 --FSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMI 473

Query: 261 ACYARNGMAFEALELFREMI-MESHDLC--------------PNSVTMVSVLQACAALAA 305
             Y  +G    AL L  EM  ME+                  PN++T+++VL  CAALAA
Sbjct: 474 TGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAA 533

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           + +GK IH Y +R  L S + V SALV MYA+CG L L + VF+ M  ++V++WN LI +
Sbjct: 534 IAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMA 593

Query: 366 YGVHGYGGKAIQIFKEMIYHG-----VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
            G+HG G +A+++FK M+          P+ ++F++V  ACSH+GL+ EG  LF  M+ +
Sbjct: 594 CGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHD 653

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE-PGPKVWGSLLGSCRIHCNVELAE 479
           H + P+ +HYAC+VDLLGRA +LEEA +++  +  E      W SLLG+CRIH NVEL E
Sbjct: 654 HGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGE 713

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKM 539
            A+K L  LEP  A +YVLL+++Y++A +W++   V++ +   G++K PG S IE + ++
Sbjct: 714 VAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEV 773

Query: 540 YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA 599
           + F++ D  HPQ EQLH  L  LS +M+++GYVP T  VL+++D +EKE ++ GHSEKLA
Sbjct: 774 HKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLA 833

Query: 600 VAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           +AFG++NT  G TIR+ KNLR+C DCH+ TKFISK   +EI+VRDV RFHHF+ G CSCG
Sbjct: 834 IAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCG 893

Query: 660 DYW 662
           DYW
Sbjct: 894 DYW 896



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 209/455 (45%), Gaps = 43/455 (9%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLL----LSCTH---HNSLSDALNVHSH 105
           N  I +LC+     QAL+                L    L+C++    + L     +H +
Sbjct: 163 NSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGY 222

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
               G DQ  F    L+ +Y+    VDD++ +F+    R +  WN +  + + + R  E 
Sbjct: 223 SLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEA 281

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH-- 223
           L  +R M     G+  D  T   VL AC         L  GKEIHA VLR+  N ++   
Sbjct: 282 LAFFRLM--VLEGVELDGVTIASVLPAC----SHLERLDVGKEIHAYVLRN--NDLIENS 333

Query: 224 -IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
            + + L+DMY     V     VF  +  + +  W+AMI+ YARNG+  +AL LF EMI +
Sbjct: 334 FVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMI-K 392

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
              L PN+ TM SV+ AC    A    + IHGY ++ G      V +AL+ MY+R GK++
Sbjct: 393 VAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMD 452

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM-----------------IYH 385
           + + +FD M+ RD VSWN++I+ Y + G    A+ +  EM                    
Sbjct: 453 ISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGG 512

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
              P+ I+ ++VL  C+    + +GK +  +    +M+   +   + +VD+  +   L  
Sbjct: 513 PYKPNAITLMTVLPGCAALAAIAKGKEI-HAYAIRNMLASDITVGSALVDMYAKCGCLNL 571

Query: 446 AAKIIEDLRIEPGPKV--WGSLLGSCRIHCNVELA 478
           + ++  ++   P   V  W  L+ +C +H   E A
Sbjct: 572 SRRVFNEM---PNKNVITWNVLIMACGMHGKGEEA 603



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/410 (30%), Positives = 198/410 (48%), Gaps = 31/410 (7%)

Query: 3   ALQSPQTPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQ 62
           +LQ+ Q P  ++ P  +   +  PPKP+S              S S+ +  + ++S  + 
Sbjct: 25  SLQT-QPPPSIQKPTASPLTSKTPPKPTS-------------PSRSTASWVDALRSRTRS 70

Query: 63  GNLRQALDVLSIE-----PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL 117
            + R+A+    IE       P    +  +L + +    L     +H+     G+      
Sbjct: 71  NDFREAISTY-IEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVT 129

Query: 118 VTK-LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           V   L+N+Y     + D   VFD+   R    WN+   AL    + E+ LE +R M    
Sbjct: 130 VANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMEN 189

Query: 177 TGIRSDRFTYTYVLKACVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
             + S  FT   V  AC  S+ G    L+ GK++H   LR G +        L+ MYA+ 
Sbjct: 190 MELSS--FTLVSVALAC--SNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKL 244

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G V  +  +F     +++VSW+ MI+ ++++    EAL  FR M++E  +L  + VT+ S
Sbjct: 245 GRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVEL--DGVTIAS 302

Query: 296 VLQACAALAALEQGKMIHGYILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           VL AC+ L  L+ GK IH Y+LR   L     V SALV MY  C ++E G+ VFDH+  R
Sbjct: 303 VLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGR 362

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSH 403
            +  WN++IS Y  +G   KA+ +F EMI   G+ P+  +  SV+ AC H
Sbjct: 363 RIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVH 412



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 173/331 (52%), Gaps = 22/331 (6%)

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
           R+   W    R+ T +    E +  Y  M  T +G R D F +  VLKA      G   L
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEM--TVSGARPDNFAFPAVLKAV----SGLQDL 108

Query: 204 KHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           K G++IHA+ ++ GY +  V +  TL++MY + G +     VF ++  ++ VSW++ IA 
Sbjct: 109 KTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAA 168

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA---ALEQGKMIHGYILRR 319
             R     +ALE FR M ME+ +L  +S T+VSV  AC+ L     L  GK +HGY LR 
Sbjct: 169 LCRFEKWEQALEAFRAMQMENMEL--SSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRV 226

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           G D      +AL+ MYA+ G+++  + +F+    RD+VSWN++ISS+       +A+  F
Sbjct: 227 G-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFF 285

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE-SMRKEHMIRPSVEHYACMVDLLG 438
           + M+  GV    ++  SVL ACSH   ++ GK +    +R   +I  S    A +VD+  
Sbjct: 286 RLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSA-LVDMYC 344

Query: 439 RANKLEEAAKIIEDL---RIEPGPKVWGSLL 466
              ++E   ++ + +   RIE    +W +++
Sbjct: 345 NCRQVESGRRVFDHILGRRIE----LWNAMI 371



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 163/350 (46%), Gaps = 44/350 (12%)

Query: 53  NELIQSLCKQGNLRQALDVLSIE--------PNPTQHTYELLLLSCTHHNSLSDALNVHS 104
           N +I    + G   +AL +L IE        PN T  T   ++ +C H  + S+  ++H 
Sbjct: 368 NAMISGYARNGLDEKAL-ILFIEMIKVAGLLPNTT--TMASVMPACVHCEAFSNKESIHG 424

Query: 105 HLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
           +    GF +D ++   L+++YS    +D +  +FD    R    WN +     L+GR   
Sbjct: 425 YAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSN 484

Query: 165 VLEL---YRRMNGT------------GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
            L L    +RM  T            G   + +  T   VL  C A     + +  GKEI
Sbjct: 485 ALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAA----LAAIAKGKEI 540

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           HA  +R+     + + + L+DMYA+ GC+  +  VF++M  KNV++W+ +I     +G  
Sbjct: 541 HAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKG 600

Query: 270 FEALELFREMIMES---HDLCPNSVTMVSVLQACAALAALEQG-----KMIHGYILRRGL 321
            EALELF+ M+ E+    +  PN VT ++V  AC+    + +G     +M H +    G+
Sbjct: 601 EEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDH----GV 656

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKR--DVVSWNSLISSYGVH 369
           +      + +V +  R G+LE    + + M      V +W+SL+ +  +H
Sbjct: 657 EPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIH 706


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/618 (39%), Positives = 376/618 (60%), Gaps = 16/618 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDAL--------NVHS 104
           N L+    K G+L  A+ V      P   ++  ++  C  H     AL         +HS
Sbjct: 297 NALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHS 356

Query: 105 HLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
            L     + D F+   L+++YS  D ++DAR  F+    + +  WNA+    +      E
Sbjct: 357 SLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDME 416

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
            L L+  M+  G G   ++ T + +LK    S+ G  ++   +++H   ++ G++  +++
Sbjct: 417 ALSLFVEMHKEGIGF--NQTTLSTILK----STAGLQVVHVCRQVHGLSVKSGFHSDIYV 470

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
           + +LID Y +   V  A  +F +  + ++VS+++MI  YA+ G   EAL+LF EM  +  
Sbjct: 471 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEM--QDM 528

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
           +L P+     S+L ACA L+A EQGK +H +IL+ G    +   ++LV MYA+CG ++  
Sbjct: 529 ELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDA 588

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
              F  + +R +VSW+++I     HG+G +A+Q+F +M+  GVSP+ I+ VSVLGAC+HA
Sbjct: 589 GRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHA 648

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           GLV E K+ FESM +    +P  EHYACM+DLLGRA K+ EA +++  +  E    VWG+
Sbjct: 649 GLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGA 708

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LLG+ RIH +VEL  RA++ LF LEP  +G +VLLA++YA+A  W+ V  V+RL+    +
Sbjct: 709 LLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKV 768

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +K PG S IEVK K+Y+F+  D  H + ++++A L  LS  M + GYVP  ++ L+D++ 
Sbjct: 769 KKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQ 828

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
            EKE ++  HSEKLAVAFGLI T +G  IR+ KNLR+C DCH+  K+I K  ++EI+VRD
Sbjct: 829 SEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRD 888

Query: 645 VNRFHHFRNGVCSCGDYW 662
           +NRFHHF++G CSCGDYW
Sbjct: 889 INRFHHFKDGSCSCGDYW 906



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 206/419 (49%), Gaps = 36/419 (8%)

Query: 13  LRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVL 72
            + P H     HLP KP+           T P   S   +   I +L  +GN        
Sbjct: 9   FQKPLHQR--LHLPFKPAPKLI------QTVP-QFSEDPQTTAILNLIDKGNF------- 52

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
                PT  +Y  LL  C    SL   L +H+H+T +G   DP +   LIN+YS      
Sbjct: 53  ----TPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFG 108

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
            AR + D++    +  W+AL       G G   L  +  M+    G++ + FT++ VLKA
Sbjct: 109 YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMH--LLGVKCNEFTFSSVLKA 166

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
           C         L+ GK++H  V+  G+ G V +  TL+ MYA+    + +  +F ++  +N
Sbjct: 167 CSI----VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERN 222

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           VVSW+A+ +CY +     EA+ LF EM++    + PN  ++ S++ AC  L    +GK+I
Sbjct: 223 VVSWNALFSCYVQXDFCGEAVGLFYEMVLSG--IKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           HGY+++ G D      +ALV MYA+ G L     VF+ + + D+VSWN++I+   +H + 
Sbjct: 281 HGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHH 340

Query: 373 GKAIQIFKEM---IYHGVSPSPIS---FVSV--LGACSHAGLVEEGKMLFESMRKEHMI 423
            +A+++  +M   ++  +    +    FVSV  +   S   L+E+ +M F  + ++ +I
Sbjct: 341 EQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLI 399



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 187/370 (50%), Gaps = 24/370 (6%)

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
           +L L  + N T T +     +Y+ +L  C    C    L+ G +IHA + + G +    I
Sbjct: 43  ILNLIDKGNFTPTSV-----SYSKLLSQC----CTTKSLRPGLQIHAHITKSGLSDDPSI 93

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
              LI++Y++     YA  +  + +  ++VSWSA+I+ YA+NG+   AL  F EM +   
Sbjct: 94  RNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG- 152

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
            +  N  T  SVL+AC+ +  L  GK +HG ++  G +  + V + LV MYA+C +    
Sbjct: 153 -VKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDS 211

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           + +FD + +R+VVSWN+L S Y    + G+A+ +F EM+  G+ P+  S  S++ AC+  
Sbjct: 212 KRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGL 271

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
                GK++   + K           A +VD+  +   L +A  + E ++ +P    W +
Sbjct: 272 RDSSRGKIIHGYLIKLGYDWDPFSANA-LVDMYAKVGDLADAISVFEKIK-QPDIVSWNA 329

Query: 465 LLGSCRIHCN----VELAERASKRL------FELEPTNAGNYVLLADVYAAADMWDEVKR 514
           ++  C +H +    +EL  +  ++L       ++E ++    V L D+Y+  D+ ++ + 
Sbjct: 330 VIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDME-SDLFVSVGLVDMYSKCDLLEDARM 388

Query: 515 VKRLLEARGL 524
              LL  + L
Sbjct: 389 AFNLLPEKDL 398


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/590 (40%), Positives = 384/590 (65%), Gaps = 12/590 (2%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
           S+EP  T   Y  +L  CT+   L     +H+H+  + F+ D  L+  ++N+Y+   S++
Sbjct: 100 SLEPERT--LYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLE 157

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           +A+ +FDK   + +  W  L    + +G+  E L L+ +M     G + + FT + +LKA
Sbjct: 158 EAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKM--LHLGFQPNEFTLSSLLKA 215

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
              S  G S   HG+++HA  L++GY+  VH+ ++L+DMYAR+  +  A  +F+ +A KN
Sbjct: 216 ---SGTGPSD-HHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKN 271

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           VVSW+A+IA +AR G     + LF +M+ +  +  P   T  SVL ACA+  +LEQGK +
Sbjct: 272 VVSWNALIAGHARKGEGEHVMRLFXQMLRQGFE--PTHFTYSSVL-ACASSGSLEQGKWV 328

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           H ++++ G   I  + + L+ MYA+ G ++  + VF  + K+D+VSWNS+IS Y  HG G
Sbjct: 329 HAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLG 388

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +A+Q+F++M+   V P+ I+F+SVL ACSH+GL++EG+  FE M+K H I   V H+  
Sbjct: 389 AEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVT 447

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
           +VDLLGRA +L EA K IE++ I+P   VWG+LLG+CR+H N++L   A++++FEL+P +
Sbjct: 448 VVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHD 507

Query: 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQF 552
           +G +VLL+++YA+A    +  +V+++++  G++K P  S +E++ +++ FV+ D+ HP  
Sbjct: 508 SGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMR 567

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
           E++  +   +S ++KE GYVP T  VL+ ++ +++E  +  HSEKLA+AF ++ T  G T
Sbjct: 568 EEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLT 627

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IRI KN+R+C DCHS  KF S+   +EI+VRD NRFHHF +G+CSC DYW
Sbjct: 628 IRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/614 (39%), Positives = 379/614 (61%), Gaps = 13/614 (2%)

Query: 53  NELIQSLCKQGNLRQALD-VLSIEPN---PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G  + AL+ VL ++     P   T   +L +     SL    ++H +   
Sbjct: 245 NTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMR 304

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF+    + T L+++YS   SV  AR +FD+   +T+  WN++       G     +E+
Sbjct: 305 AGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEI 364

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +++M      +     T    L AC         ++ G+ +H  + +      V +M +L
Sbjct: 365 FQKM--MDEQVEMTNVTVMGALHAC----ADLGDVEQGRFVHKLLDQLELGSDVSVMNSL 418

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MY++   V  A  +F  +  K +VSW+AMI  YA+NG   EA++ F +M ++  ++ P
Sbjct: 419 ISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQ--NIKP 476

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +S TMVSV+ A A L+ L Q K IHG ++R  LD  + V +ALV MYA+CG +   + +F
Sbjct: 477 DSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLF 536

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D MD+R V +WN++I  YG HG G  A+++F++M    + P+ ++F+ VL ACSH+GLVE
Sbjct: 537 DMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVE 596

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG   F SM+K++ + P+++HY  MVDLLGRAN+L EA   I+ + IEP   V+G++LG+
Sbjct: 597 EGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGA 656

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH NVEL E+A+ R+F+L+P + G +VLLA++YA A MWD+V RV+  +E +G+QK P
Sbjct: 657 CRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTP 716

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +E++ ++++F S    HPQ ++++A L  L   +K  GY+P T  V +D++   KE
Sbjct: 717 GWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSV-HDVEDVVKE 775

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           +++  HSEKLA+AF L+NTS G TI + KNLR+C DCH+ TK+IS    +EI+VRD+ RF
Sbjct: 776 QLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRF 835

Query: 649 HHFRNGVCSCGDYW 662
           HHF++G CSCGDYW
Sbjct: 836 HHFKDGTCSCGDYW 849



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 209/414 (50%), Gaps = 14/414 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  + +  LL  C  +  L     +H  L  NGF  + F +T ++N+Y+    V++A  +
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+   R +  WN +       G G+  LEL  RM   G   R D  T   +L A     
Sbjct: 233 FDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGK--RPDSITIVSILPAVADVG 290

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L+ G+ IH   +R G+   V++ T L+DMY++ G V  A  +F +M  K VVSW+
Sbjct: 291 S----LRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWN 346

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           +MI  Y +NG    A+E+F++M+ E  ++   +VT++  L ACA L  +EQG+ +H  + 
Sbjct: 347 SMIDGYVQNGDPGAAMEIFQKMMDEQVEM--TNVTVMGALHACADLGDVEQGRFVHKLLD 404

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           +  L S + V+++L++MY++C ++++   +F+++  + +VSWN++I  Y  +G   +AI 
Sbjct: 405 QLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAID 464

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
            F +M    + P   + VSV+ A +   ++ + K +   +     +  +V     +VD+ 
Sbjct: 465 YFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWI-HGLVIRTCLDKNVFVATALVDMY 523

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH----CNVELAERASKRLFE 487
            +   +  A K+  D+  E     W +++     H      +EL E+  K + +
Sbjct: 524 AKCGAVHTARKLF-DMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIK 576



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 203/375 (54%), Gaps = 12/375 (3%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
           +H   +LL  CT    L   + +   +  NG   +    TKL++++  F S+ +A  VF 
Sbjct: 77  KHPSAILLELCTSMKELHQFIPL---IIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQ 133

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
               +   +++ + +        ++ +  + RM   G  +R   + +TY+LK C  ++  
Sbjct: 134 PIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDG--VRPVVYNFTYLLKVCGDNAD- 190

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
              L+ GKEIH  ++ +G+   V  MT +++MYA+   V  A  +F +M  +++V W+ +
Sbjct: 191 ---LRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTI 247

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I+ YA+NG    ALEL   M  E     P+S+T+VS+L A A + +L  G+ IHGY +R 
Sbjct: 248 ISGYAQNGFGKTALELVLRMQEEGKR--PDSITIVSILPAVADVGSLRIGRSIHGYSMRA 305

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           G +S + V +ALV MY++CG +   + +FD M  + VVSWNS+I  Y  +G  G A++IF
Sbjct: 306 GFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIF 365

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           ++M+   V  + ++ +  L AC+  G VE+G+ + + + +  +    V     ++ +  +
Sbjct: 366 QKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLEL-GSDVSVMNSLISMYSK 424

Query: 440 ANKLEEAAKIIEDLR 454
             +++ AA+I E+L+
Sbjct: 425 CKRVDIAAEIFENLQ 439



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 148/320 (46%), Gaps = 12/320 (3%)

Query: 207 KEIHASVLRHGYNGIVH---IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
           KE+H  +     NG+       T L+ ++ +FG +  A  VF  +  K    +  M+  Y
Sbjct: 91  KELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGY 150

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           ARN    +A+  F  M  +   + P       +L+ C   A L +GK IH  ++  G  S
Sbjct: 151 ARNSSLDDAVSFFCRMRYDG--VRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFAS 208

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            +  ++ +V MYA+C  +E    +FD M +RD+V WN++IS Y  +G+G  A+++   M 
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQ 268

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFE-SMRKEHMIRPSVEHYACMVDLLGRANK 442
             G  P  I+ VS+L A +  G +  G+ +   SMR        V     +VD+  +   
Sbjct: 269 EEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAG--FESFVNVSTALVDMYSKCGS 326

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           +   A++I D         W S++     + +   A    +++ + E     N  ++  +
Sbjct: 327 V-GTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMD-EQVEMTNVTVMGAL 384

Query: 503 YAAADMWD--EVKRVKRLLE 520
           +A AD+ D  + + V +LL+
Sbjct: 385 HACADLGDVEQGRFVHKLLD 404


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/586 (38%), Positives = 368/586 (62%), Gaps = 8/586 (1%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P + T+  LL + T+   L     VH  +   G + +P + T L+ +Y+    +  A+ 
Sbjct: 194 KPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQV 253

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FDK   + +  W  L       G+ +  LEL  +M      +  ++ TYT +L+ C   
Sbjct: 254 IFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAE--VAPNKITYTSILQGCTTP 311

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+HGK++H  +++ GY   + ++  LI MY + G +  A  +F  +  ++VV+W
Sbjct: 312 LA----LEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTW 367

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AM+  YA+ G   EA++LFR M  +   + P+ +T  S L +C++ A L++GK IH  +
Sbjct: 368 TAMVTGYAQLGFHDEAIDLFRRM--QQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQL 425

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           +  G    + + SALV+MYA+CG ++  + VF+ M +R+VV+W ++I+    HG   +A+
Sbjct: 426 VHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREAL 485

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           + F++M   G+ P  ++F SVL AC+H GLVEEG+  F SM  ++ I+P VEHY+C VDL
Sbjct: 486 EYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDL 545

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA  LEEA  +I  +  +PGP VWG+LL +CRIH +VE  ERA++ + +L+P + G Y
Sbjct: 546 LGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAY 605

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           V L+++YAAA  +++ ++V++++E R + K PG+S IEV  K++ F   D+ HP+ ++++
Sbjct: 606 VALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIY 665

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
           A L  L+ ++KE+GYVP T+ VL+D+D E+K + +  HSE+LA+ +GL+ T  G  IRI 
Sbjct: 666 AELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIV 725

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+ +KFISK   +EI+ RD +RFHHF +GVCSCGD+W
Sbjct: 726 KNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/420 (30%), Positives = 214/420 (50%), Gaps = 18/420 (4%)

Query: 59  LCKQGNLRQALDVLSIEPNPTQHTY----ELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           LCKQG L++AL +L+         Y      LL  C    SL     VH+ +  +G   +
Sbjct: 71  LCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPN 130

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
            +L   L+++Y+   S+ DAR VFD  R R I  W A+  A     +  E  + Y  M  
Sbjct: 131 RYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKL 190

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
            G   + D+ T+  +L A         LL+ G+++H  + + G      + T+L+ MYA+
Sbjct: 191 AGC--KPDKVTFVSLLNAFTNP----ELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAK 244

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A  +F ++  KNVV+W+ +IA YA+ G    ALEL  +  M+  ++ PN +T  
Sbjct: 245 CGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEK--MQQAEVAPNKITYT 302

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           S+LQ C    ALE GK +H YI++ G    + VV+AL+TMY +CG L+  + +F  +  R
Sbjct: 303 SILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHR 362

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           DVV+W ++++ Y   G+  +AI +F+ M   G+ P  ++F S L +CS    ++EGK + 
Sbjct: 363 DVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIH 422

Query: 415 ESMRKEHMIRPSVEHY--ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           + +        S++ Y  + +V +  +   +++A  +   +  E     W +++  C  H
Sbjct: 423 QQLVHAGY---SLDVYLQSALVSMYAKCGSMDDARLVFNQMS-ERNVVAWTAMITGCAQH 478



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 166/321 (51%), Gaps = 14/321 (4%)

Query: 55  LIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           LI    +QG +  AL++L      E  P + TY  +L  CT   +L     VH ++  +G
Sbjct: 269 LIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSG 328

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           + ++ ++V  LI +Y     + +AR +F     R +  W A+       G  +E ++L+R
Sbjct: 329 YGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFR 388

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           RM     GI+ D+ T+T  L +C  SS  F  L+ GK IH  ++  GY+  V++ + L+ 
Sbjct: 389 RMQ--QQGIKPDKMTFTSALTSC--SSPAF--LQEGKSIHQQLVHAGYSLDVYLQSALVS 442

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MYA+ G +  A  VF+QM+ +NVV+W+AMI   A++G   EALE F +  M+   + P+ 
Sbjct: 443 MYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQ--MKKQGIKPDK 500

Query: 291 VTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
           VT  SVL AC  +  +E+G K      L  G+  ++   S  V +  R G LE  + V  
Sbjct: 501 VTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVIL 560

Query: 350 HMDKRDVVS-WNSLISSYGVH 369
            M  +   S W +L+S+  +H
Sbjct: 561 TMPFQPGPSVWGALLSACRIH 581



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           + ++ S  ++   + G   EAL +   MI++   +   S     +LQ CA L +LEQG+ 
Sbjct: 60  DTLANSGDVSILCKQGRLKEALGILNTMILQGTRV--YSDVFRGLLQECARLRSLEQGRE 117

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +H  IL+ G+     + + L++MYA+CG L   + VFD +  R++VSW ++I ++     
Sbjct: 118 VHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQ 177

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM-IRPSVEHY 430
             +A + ++ M   G  P  ++FVS+L A ++  L++ G+ +   + K  + + P V   
Sbjct: 178 NLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG-- 235

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
             +V +  +   + +A  I + L  E     W  L+        V++A
Sbjct: 236 TSLVGMYAKCGDISKAQVIFDKLP-EKNVVTWTLLIAGYAQQGQVDVA 282


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/614 (39%), Positives = 379/614 (61%), Gaps = 13/614 (2%)

Query: 53  NELIQSLCKQGNLRQALD-VLSIEPN---PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G  ++AL+ VL ++     P   T   +L +      L    ++H +   
Sbjct: 217 NTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIR 276

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF +   + T L ++YS   SV+ AR +FD   ++T+  WN++       G  E+ + +
Sbjct: 277 AGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAV 336

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M     GI     T    L AC         L+ GK +H  V +      + +M +L
Sbjct: 337 FEKM--LEEGIDPTGVTIMEALHAC----ADLGDLERGKFVHKFVDQLNLGSDISVMNSL 390

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MY++   V  A  +F+ +  +  VSW+AMI  YA+NG   EAL  F EM  +S  + P
Sbjct: 391 ISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM--KSLGMKP 448

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +S TMVSV+ A A L+     K IHG I+R  LD  + V +ALV MY++CG + + + +F
Sbjct: 449 DSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLF 508

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D +  R V++WN++I  YG HG G  A+ +F +M    V P+ I+++SV+ ACSH+GLV+
Sbjct: 509 DMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVD 568

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG   F+SM++++ + PS++HY  MVDLLGRA +++EA   IE++ I PG  V+G++LG+
Sbjct: 569 EGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGA 628

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C+IH N+E+ E+A+K+LFEL P   G +VLLA++YA+   W +V  V++ +E +GL+K P
Sbjct: 629 CKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTP 688

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +E++ +++SF S    HPQ ++++A L  L  E+K  GYVP T ++L D++ + +E
Sbjct: 689 GCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQE 747

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           +++  HSEKLA+AFGL+NTS G TI + KNLR+C DCH+ TK+IS    +EI+VRD+ RF
Sbjct: 748 QLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRF 807

Query: 649 HHFRNGVCSCGDYW 662
           HHF+NG+CSCGDYW
Sbjct: 808 HHFKNGICSCGDYW 821



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 185/334 (55%), Gaps = 11/334 (3%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
           +H   +LL  CT    L   + +   +  NG   +    TKL++++S + S+++A  VF+
Sbjct: 49  KHPAAVLLELCTSMKELHQIIPL---VIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFE 105

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
               +   +++ + +        E  L    RM      ++   + +TY+LK C  ++  
Sbjct: 106 PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDD--VKPVVYNFTYLLKVCGDNAD- 162

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
              LK GKEIH  ++ + +   V  MT +++MYA+   +  A  +F +M  +++VSW+ +
Sbjct: 163 ---LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTI 219

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           IA +++NG A +ALEL   M  E     P+S+T+V+VL A A +  L  GK IHGY +R 
Sbjct: 220 IAGFSQNGFAKKALELVLRMQDEGQR--PDSITLVTVLPAAADVGLLMVGKSIHGYAIRA 277

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           G   ++ + +AL  MY++CG +E  + +FD MD++ VVSWNS++  Y  +G   KAI +F
Sbjct: 278 GFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVF 337

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           ++M+  G+ P+ ++ +  L AC+  G +E GK +
Sbjct: 338 EKMLEEGIDPTGVTIMEALHACADLGDLERGKFV 371



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 148/309 (47%), Gaps = 12/309 (3%)

Query: 207 KEIHASVLRHGYNGIVH---IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
           KE+H  +     NG+ +     T L+ +++++G +  A  VF  +  K    +  M+  Y
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           A+N     AL     M  +  D+ P       +L+ C   A L++GK IHG ++     +
Sbjct: 123 AKNSSLETALAFLCRMRYD--DVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA 180

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            +  ++ +V MYA+C +++    +FD M +RD+VSWN++I+ +  +G+  KA+++   M 
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
             G  P  I+ V+VL A +  GL+  GK +     +    +  V     + D+  +   +
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAK-LVNISTALADMYSKCGSV 299

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE--LEPTNAGNYVLLAD 501
            E A++I D   +     W S++     +   E A    +++ E  ++PT      ++  
Sbjct: 300 -ETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV---TIMEA 355

Query: 502 VYAAADMWD 510
           ++A AD+ D
Sbjct: 356 LHACADLGD 364


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/577 (41%), Positives = 355/577 (61%), Gaps = 7/577 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +   C     +S    VHS      F ++      L+++YS    +D A+ VF +   R+
Sbjct: 302 VFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 361

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  + ++       G   E ++L+  M   G  I  D +T T VL  C      + LL  
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEG--ISPDVYTVTAVLNCCAR----YRLLDE 415

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK +H  +  +     + +   L+DMYA+ G +  A  VFS+M VK+++SW+ +I  Y++
Sbjct: 416 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSK 475

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           N  A EAL LF  +++E     P+  T+  VL ACA+L+A ++G+ IHGYI+R G  S  
Sbjct: 476 NCYANEALSLF-NLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V ++LV MYA+CG L L   +FD +  +D+VSW  +I+ YG+HG+G +AI +F +M   
Sbjct: 535 HVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQA 594

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+    ISFVS+L ACSH+GLV+EG   F  MR E  I P+VEHYAC+VD+L R   L +
Sbjct: 595 GIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIK 654

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A + IE++ I P   +WG+LL  CRIH +V+LAE+ ++++FELEP N G YVL+A++YA 
Sbjct: 655 AYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAE 714

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
           A+ W++VKR+++ +  RGL+K PG S IE+K ++  FV+ D  +P+ E + A L  + A 
Sbjct: 715 AEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRAR 774

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           M E+GY P TK  L D +  EKE  + GHSEKLA+A G+I++  G+ IR+TKNLR+C DC
Sbjct: 775 MIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDC 834

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H   KF+SK   +EI++RD NRFH F++G CSC  +W
Sbjct: 835 HEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 220/438 (50%), Gaps = 18/438 (4%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEP--NPTQHTYELLLLSCTHHNSLSD 98
           S T    S  + N  ++  C+ GNL  A+ +L +    +    T   +L  C    SL D
Sbjct: 53  SITTFDRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKD 112

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
              V + +  NGF  D  L +KL  +Y++   + +A  VFD+ +      WN L   L  
Sbjct: 113 GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAK 172

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH---GKEIHASVLR 215
           +G     + L+++M    +G+  D +T++     CV+ S  FS L+    G+++H  +L+
Sbjct: 173 SGDFSGSIGLFKKM--MSSGVEMDSYTFS-----CVSKS--FSSLRSVHGGEQLHGFILK 223

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
            G+     +  +L+  Y +   V  A  VF +M  ++V+SW+++I  Y  NG+A + L +
Sbjct: 224 SGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSV 283

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F +M++   ++  +  T+VSV   CA    +  G+ +H   ++          + L+ MY
Sbjct: 284 FVQMLVSGIEI--DLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMY 341

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ++CG L+  + VF  M  R VVS+ S+I+ Y   G  G+A+++F+EM   G+SP   +  
Sbjct: 342 SKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVT 401

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
           +VL  C+   L++EGK + E + KE+ +   +     ++D+  +   ++EA  +  ++R+
Sbjct: 402 AVLNCCARYRLLDEGKRVHEWI-KENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460

Query: 456 EPGPKVWGSLLGSCRIHC 473
           +     W +++G    +C
Sbjct: 461 KDIIS-WNTIIGGYSKNC 477



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 107/253 (42%), Gaps = 23/253 (9%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P + T   +L +C   ++      +H ++  NG+  D  +   L+++Y+   ++  A  
Sbjct: 496 SPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHM 555

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FD    + +  W  +     + G G+E + L+ +M     GI +D  ++  +L AC  S
Sbjct: 556 LFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMR--QAGIEADEISFVSLLYACSHS 613

Query: 197 SC------GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
                    F++++H  +I  +V  +           ++DM AR G ++ A      M +
Sbjct: 614 GLVDEGWRFFNIMRHECKIEPTVEHY---------ACIVDMLARTGDLIKAYRFIENMPI 664

Query: 251 -KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP-NSVTMVSVLQACAALAALEQ 308
             +   W A++ C  R     +  E   E + E   L P N+   V +    A     EQ
Sbjct: 665 PPDATIWGALL-CGCRIHHDVKLAEKVAEKVFE---LEPENTGYYVLMANIYAEAEKWEQ 720

Query: 309 GKMIHGYILRRGL 321
            K +   I +RGL
Sbjct: 721 VKRLRKRIGQRGL 733


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/629 (38%), Positives = 375/629 (59%), Gaps = 36/629 (5%)

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
           ++LS    P       +L + +       AL +H ++  +GF+ + F+   LI +YS   
Sbjct: 328 NMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCG 387

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS-------D 182
           S+ DA  +F     R + +W+++  A  + GRG E LE++ +M     GI S        
Sbjct: 388 SLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQP 447

Query: 183 RFTYTYVLKACVASS------------CGFSLLKHGKEI------------HASVLRHGY 218
           +      + +C  ++              F  L H  EI             +++  +G 
Sbjct: 448 QVQPPLAITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGL 507

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
                I+T    MY  F  +  A  VF  +       W+ MI  +A +G    +LEL+ +
Sbjct: 508 QYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSK 567

Query: 279 MIM-----ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
           M+      ++  + PN V+++SVL AC  L AL +G+  H Y+++ G +  + V +A++ 
Sbjct: 568 MMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMD 627

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MY++CG L+L +C+FD    +D+V W+++I+SYG+HG+G KAI +F +M+  GV PS ++
Sbjct: 628 MYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVT 687

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           F  VL ACSH+GL+EEGKM F+ M +E +I   + +YACMVDLLGRA +L EA  +IE++
Sbjct: 688 FTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENM 747

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
            +EP   +WGSLLG+CRIH N++LAE+ +  LF L+P +AG +VLL+++YAA   W+EV+
Sbjct: 748 PVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVE 807

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
           +V++++  RG  K+ G S +E   +++ F   D  HPQ+E+L+A L  L+A MK  GYVP
Sbjct: 808 KVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVP 867

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
            T  VL+D++ E KE  +  HSE+LA+AFGLINTS G T+RITKNLR+C DCH+  K IS
Sbjct: 868 LTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLIS 927

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K  N+ ILVRD++RFH F +GVCSCGDYW
Sbjct: 928 KIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 161/331 (48%), Gaps = 46/331 (13%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD-NGFDQ 113
           L++   K G + +AL V      P    +  ++     +N   +AL + S +   + FD 
Sbjct: 145 LVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDG 204

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           D  LV  L+N+Y+       A ++F K   + +  W+ +           E L L+  M 
Sbjct: 205 DLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEM- 263

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
                   +  T    L+AC  S      L+ GK+IH                       
Sbjct: 264 -IEKRFEPNSVTVVSALQACAVSRN----LEEGKKIH----------------------- 295

Query: 234 RFGCVMYAGFVFSQMAV-KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
                        ++AV K+VVSW A+++ YA+NGMA++++ +FR M+  S  + P++V 
Sbjct: 296 -------------KIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNML--SDGIQPDAVA 340

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           +V +L A + L   +Q   +HGY++R G +S + V ++L+ +Y++CG L     +F  M 
Sbjct: 341 VVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMI 400

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            RDVV W+S+I++YG+HG GG+A++IF +MI
Sbjct: 401 VRDVVIWSSMIAAYGIHGRGGEALEIFDQMI 431



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 182/426 (42%), Gaps = 85/426 (19%)

Query: 53  NELIQSLCKQGNLRQALDVLSI-----EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N  ++S C++    + L +  +        P   T  + L +C     L     +H    
Sbjct: 71  NSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAK 130

Query: 108 DNG-FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
            N     D F+ + L+ +YS    + +A  VF++ +R    +W ++          EE L
Sbjct: 131 KNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEAL 190

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            L+ +M                                        V+   ++G + ++ 
Sbjct: 191 ALFSQM----------------------------------------VMMDCFDGDLPLVN 210

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +L+++YA+ GC   A  +FS+M  K+V+SWS MIACYA N  A EAL LF EMI +  + 
Sbjct: 211 SLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFE- 269

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            PNSVT+VS LQACA    LE+GK IH   +                             
Sbjct: 270 -PNSVTVVSALQACAVSRNLEEGKKIHKIAVW---------------------------- 300

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
                  +DVVSW +L+S Y  +G   K++ +F+ M+  G+ P  ++ V +L A S  G+
Sbjct: 301 -------KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGI 353

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
            ++   L   + +      +V   A +++L  +   L +A K+ + + +     +W S++
Sbjct: 354 FQQALCLHGYVVRSG-FNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRD-VVIWSSMI 411

Query: 467 GSCRIH 472
            +  IH
Sbjct: 412 AAYGIH 417



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 159/329 (48%), Gaps = 45/329 (13%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           L  +C +  S+S    +HS +   G   D F  TKL ++Y+   S+  AR VFD+T    
Sbjct: 10  LFQACNNGRSVS---QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +++WN+  R+     + EE L L+  M  T  G   D FT    LKAC     G  +L+ 
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTA-GEAPDNFTIPIALKACA----GLRMLEL 121

Query: 206 GKEIHASVLRHGYNGI-VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           GK IH    ++   G  + + + L+++Y++ G +  A  VF +    + V W++M+  Y 
Sbjct: 122 GKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQ 181

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           +N    EAL LF +M+M     C                                  D  
Sbjct: 182 QNNDPEEALALFSQMVMMD---C---------------------------------FDGD 205

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           LP+V++L+ +YA+ G  ++   +F  M ++DV+SW+++I+ Y  +    +A+ +F EMI 
Sbjct: 206 LPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIE 265

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKML 413
               P+ ++ VS L AC+ +  +EEGK +
Sbjct: 266 KRFEPNSVTVVSALQACAVSRNLEEGKKI 294



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/463 (20%), Positives = 190/463 (41%), Gaps = 52/463 (11%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N L+    K G  + A ++ S  P     ++  ++    ++ + ++ALN+   + +  F+
Sbjct: 210 NSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFE 269

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            +   V   +   +   ++++ + +      + +  W AL       G   + + ++R M
Sbjct: 270 PNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNM 329

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                GI+ D      +L    A+S    + +    +H  V+R G+N  V +  +LI++Y
Sbjct: 330 --LSDGIQPDAVAVVKIL----AASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELY 383

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI--MESHDLCPNS 290
           ++ G +  A  +F  M V++VV WS+MIA Y  +G   EALE+F +MI  M+    C   
Sbjct: 384 SKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSC-YQ 442

Query: 291 VTMVSVLQACAALAA----------------------------------LEQGKMIHGYI 316
           ++M   +Q   A+ +                                   +   M    I
Sbjct: 443 ISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNI 502

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
              GL     +++    MY    +++    VF+ +       WN +I  +   G    ++
Sbjct: 503 FAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSL 562

Query: 377 QIFKEMIYH-------GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           +++ +M+         GV P+ +S +SVL AC + G + +G+  F S   +      +  
Sbjct: 563 ELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEW-FHSYVIQTGFEFDILV 621

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
              ++D+  +   L + A+ + D         W +++ S  IH
Sbjct: 622 ATAIMDMYSKCGSL-DLARCLFDETAGKDLVCWSAMIASYGIH 663



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 117/259 (45%), Gaps = 52/259 (20%)

Query: 53  NELIQSLCKQGNLRQALDVLS------IEPN-----PTQHTYELLLLSCTHHNSLSDALN 101
           N +I+     G    +L++ S      ++P+     P + +   +LL+C +  +L     
Sbjct: 546 NVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEW 605

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
            HS++   GF+ D  + T ++++YS   S+D AR +FD+T  + +  W+A+  +  + G 
Sbjct: 606 FHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGH 665

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
           G + ++L+ +M     G+R    T+T VL AC  S     LL+ GK              
Sbjct: 666 GRKAIDLFDQM--VKAGVRPSHVTFTCVLSACSHS----GLLEEGK-------------- 705

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
                    MY +   +M   FV +    + + +++ M+    R G   EA++L   M +
Sbjct: 706 ---------MYFQ---LMTEEFVIA----RKLSNYACMVDLLGRAGQLSEAVDLIENMPV 749

Query: 282 ESHDLCPNSVTMVSVLQAC 300
           E     P++    S+L AC
Sbjct: 750 E-----PDASIWGSLLGAC 763



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 5/176 (2%)

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
            +V + QAC    ++ Q   +H  + + G+       + L ++YA+C  L+  + VFD  
Sbjct: 6   VLVDLFQACNNGRSVSQ---LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDET 62

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSHAGLVEEG 410
              +V  WNS + SY       + +++F  MI   G +P   +    L AC+   ++E G
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           K++    +K   I   +   + +V+L  +  ++ EA K+ E+ +  P   +W S++
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMV 177


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/564 (42%), Positives = 361/564 (64%), Gaps = 9/564 (1%)

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            + VH ++   GF+    + T L+++YS   SV  AR +FD    RT+  WN++      
Sbjct: 150 GMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQ 209

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +G  E  + ++++M     G++    T    L AC         L+ GK +H  V +   
Sbjct: 210 SGDAEGAMLIFQKM--LDEGVQPTNVTVMGALHACA----DLGDLERGKFVHKLVDQLKL 263

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
           +  V +M +LI MY++   V  A  +F  +  K +VSW+AMI  YA+NG   EAL  F E
Sbjct: 264 DSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCE 323

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M  +S ++ P+S TMVSV+ A A L+   Q K IHG ++RR LD  + V++ALV MYA+C
Sbjct: 324 M--QSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKC 381

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G +   + +FD M+ R V++WN++I  YG HG G  ++++FKEM    + P+ I+F+  L
Sbjct: 382 GAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCAL 441

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSH+GLVEEG   FESM+K++ I P+++HY  MVDLLGRA +L +A   I+ + I+PG
Sbjct: 442 SACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPG 501

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             V+G++LG+C+IH NV+L E+A+  +F+L P + G +VLLA++YA A MW +V +V+ +
Sbjct: 502 ITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTI 561

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
           +E  GLQK PG S +E+  +++SF S    HPQ +++++ L  L  E++  GYVP T  +
Sbjct: 562 MEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSI 621

Query: 579 LYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANK 638
            +D++ + K +++  HSEKLA+AFGL+NTS G  I I KNLR+C DCH+ TK+IS    +
Sbjct: 622 -HDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGR 680

Query: 639 EILVRDVNRFHHFRNGVCSCGDYW 662
           EI+VRD++RFH F++GVCSCGDYW
Sbjct: 681 EIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 149/585 (25%), Positives = 266/585 (45%), Gaps = 83/585 (14%)

Query: 55  LIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +++   K  +L  AL   S        P  + +  LL  C  ++ L     +H  +  +G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           F  + F +T ++N+Y+    ++DA ++FD+   R +  WN +       G  +  L L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           RM+  G   R D  T   +L A   +     LL+ G  +H  VLR G+  +V++ T L+D
Sbjct: 121 RMSEEGH--RPDSITIVSILPAVADT----RLLRIGMAVHGYVLRAGFESLVNVSTALVD 174

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MY++ G V  A  +F  M  + VVSW++MI  Y ++G A  A+ +F++M+ E   + P +
Sbjct: 175 MYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEG--VQPTN 232

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           VT++  L ACA L  LE+GK +H  + +  LDS + V+++L++MY++C ++++   +F +
Sbjct: 233 VTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKN 292

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH------- 403
           +  + +VSWN++I  Y  +G   +A+  F EM    + P   + VSV+ A +        
Sbjct: 293 LRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQA 352

Query: 404 ----------------------------AGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
                                        G +   + LF+ M   H+I      +  M+D
Sbjct: 353 KWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVIT-----WNAMID 407

Query: 436 LLGRANKLEEAAKIIEDLR---IEPGPKVWGSLLGSCRIHCNVELAE---RASKRLFELE 489
             G     + + ++ ++++   I+P    +   L +C     VE       + K+ + +E
Sbjct: 408 GYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIE 467

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG-LQKVPGRSRIEVKR------KMYSF 542
           PT         D Y A  M D + R  RL +A   +QK+P +  I V        K++  
Sbjct: 468 PT--------MDHYGA--MVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKN 517

Query: 543 VSVDE--------FHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579
           V + E         +P     H LL N+ A     G V + + ++
Sbjct: 518 VDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIM 562


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/585 (41%), Positives = 366/585 (62%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P++ TY  +L +C    +L     +H+ + ++    D  + T L  +Y    +V DAR V
Sbjct: 244 PSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREV 303

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+    R +  WN +   L  +G+ EE   ++ RM      +  DR TY  +L AC A  
Sbjct: 304 FECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRM--LKECVAPDRVTYLAILSAC-ARP 360

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G +    GKEIHA  ++ G    V     LI+MY++ G +  A  VF +M  ++VVSW+
Sbjct: 361 GGLAC---GKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWT 417

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           A++  YA  G   E+   F++M+ +  +   N +T + VL+AC+   AL+ GK IH  ++
Sbjct: 418 ALVGGYADCGQVVESFSTFKKMLQQGVE--ANKITYMCVLKACSNPVALKWGKEIHAEVV 475

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G+ + L V +AL++MY +CG +E    V + M  RDVV+WN+LI     +G G +A+Q
Sbjct: 476 KAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQ 535

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
            F+ M    + P+  +FV+V+ AC    LVEEG+  F SMRK++ I P+ +HYACMVD+L
Sbjct: 536 KFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDIL 595

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            RA  L EA  +I  +  +P   +WG+LL +CR H NVE+ E+A+++  +LEP NAG YV
Sbjct: 596 ARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYV 655

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
            L+ +YAAA MW +V ++++L++ RG++K PGRS IEV  +++SFV+ D+ HP+ E++++
Sbjct: 656 SLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYS 715

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  L+ ++K  GYVP T+ V++DLD E KER V  HSEKLA+A+GLI+T     IR++K
Sbjct: 716 ELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSK 775

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH+ TKFISK   +EI+ RD +RFHHF+NG CSCGDYW
Sbjct: 776 NLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 204/389 (52%), Gaps = 14/389 (3%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           + Y  LL SC     L+    VH H+   G   + +++  L+ +Y H  SV++AR +FDK
Sbjct: 45  YDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDK 104

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
              +++  WN +       G G+E   L+  M     G+  D+FT+  +L AC + +   
Sbjct: 105 FSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQ--QEGLEPDKFTFVSILSACSSPAA-- 160

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             L  G+E+H  V+  G      +   LI MYA+ G V  A  VF  MA ++ VSW+ + 
Sbjct: 161 --LNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLT 218

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             YA +G A E+L+ +  M+ E   + P+ +T ++VL AC +LAALE+GK IH  I+   
Sbjct: 219 GAYAESGYAQESLKTYHAMLQEG--VRPSRITYMNVLSACGSLAALEKGKQIHAQIVESE 276

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
             S + V +AL  MY +CG ++  + VF+ +  RDV++WN++I      G   +A  +F 
Sbjct: 277 HHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFH 336

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
            M+   V+P  ++++++L AC+  G +  GK +     K+ ++   V     ++++  +A
Sbjct: 337 RMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLV-SDVRFGNALINMYSKA 395

Query: 441 NKLEEAAKIIEDLRIEPGPKV--WGSLLG 467
             +++A ++ + +   P   V  W +L+G
Sbjct: 396 GSMKDARQVFDRM---PKRDVVSWTALVG 421



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 142/503 (28%), Positives = 238/503 (47%), Gaps = 49/503 (9%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I     +G  ++A ++ ++       P + T+  +L +C+   +L+    VH  + +
Sbjct: 114 NVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVME 173

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   +  +   LI++Y+   SV DAR VFD    R    W  L  A   +G  +E L+ 
Sbjct: 174 AGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKT 233

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           Y  M     G+R  R TY  VL AC +     + L+ GK+IHA ++   ++  V + T L
Sbjct: 234 YHAM--LQEGVRPSRITYMNVLSACGS----LAALEKGKQIHAQIVESEHHSDVRVSTAL 287

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
             MY + G V  A  VF  +  ++V++W+ MI     +G   EA  +F  M+ E   + P
Sbjct: 288 TKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKEC--VAP 345

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + VT +++L ACA    L  GK IH   ++ GL S +   +AL+ MY++ G ++  + VF
Sbjct: 346 DRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVF 405

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS------ 402
           D M KRDVVSW +L+  Y   G   ++   FK+M+  GV  + I+++ VL ACS      
Sbjct: 406 DRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALK 465

Query: 403 -----HAGLVEEG------------KMLFESMRKEHMIRPS-------VEHYACMVDLLG 438
                HA +V+ G             M F+    E  IR S       V  +  ++  L 
Sbjct: 466 WGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLA 525

Query: 439 RANKLEEAAKIIEDLRIE---PGPKVWGSLLGSCRIHCNVELAER---ASKRLFELEPTN 492
           +  +  EA +  E ++ E   P    + +++ +CR+   VE   R   + ++ + + PT 
Sbjct: 526 QNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTE 585

Query: 493 AGNYVLLADVYAAADMWDEVKRV 515
             +Y  + D+ A A    E + V
Sbjct: 586 K-HYACMVDILARAGHLGEAEDV 607



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 138/236 (58%), Gaps = 6/236 (2%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G + D + Y  +L++CV +      L  GK++H  +LR G    V+I+ TL+ +Y   G 
Sbjct: 39  GSQVDSYDYVKLLQSCVKAK----DLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGS 94

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           V  A  +F + + K+VVSW+ MI+ YA  G+  EA  LF   +M+   L P+  T VS+L
Sbjct: 95  VNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLF--TLMQQEGLEPDKFTFVSIL 152

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            AC++ AAL  G+ +H  ++  GL +   V +AL++MYA+CG +   + VFD M  RD V
Sbjct: 153 SACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEV 212

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           SW +L  +Y   GY  ++++ +  M+  GV PS I++++VL AC     +E+GK +
Sbjct: 213 SWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQI 268


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/627 (39%), Positives = 388/627 (61%), Gaps = 24/627 (3%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N ++ SLC+     +AL+ L       +EP+    T   +L +C+H   L     +H++ 
Sbjct: 267 NTVLSSLCQNEQFLEALEYLREMVLEGVEPD--GFTISSVLPACSHLEMLRTGKELHAYA 324

Query: 107 TDNG-FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
             NG  D++ F+ + L+++Y +   V     VFD    R I +WNA+          EE 
Sbjct: 325 LKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEA 384

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L L+  M  +  G+ ++  T   V+ ACV S          + IH  V++ G +    + 
Sbjct: 385 LLLFIEMEESA-GLLANSTTMAGVVPACVRSGA----FSKKEAIHGFVVKRGLDRDRFVQ 439

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM-IMESH 284
             L+DMY+R G +  A  +F +M  +++V+W+ +I  Y  +    +AL +  +M I+E  
Sbjct: 440 NALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERK 499

Query: 285 --------DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
                    L PNS+T++++L +CAAL+AL +GK IH Y ++  L + + V SALV MYA
Sbjct: 500 ASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYA 559

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CG L++ + VFD +  R+V++WN ++ +YG+HG    AI + + M+  GV P+ ++F+S
Sbjct: 560 KCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFIS 619

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI 455
           V  ACSH+G+V EG  +F +M+K++ + PS +HYAC+VDLLGRA +++EA ++I  + R 
Sbjct: 620 VFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRN 679

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
                 W SLLG+CRIH N+E+ E A++ L +LEP  A +YVLLA++Y++A +W +   V
Sbjct: 680 FDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEV 739

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT 575
           +R ++A+G++K PG S IE   +++ FV+ D  HPQ E+L   L  L   M+++GY+P T
Sbjct: 740 RRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDT 799

Query: 576 KVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKF 635
             VL++++ +EKE ++ GHSEKLA+AFG++NTS G  IR+ KNLR+C DCH  TKFISK 
Sbjct: 800 SCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKV 859

Query: 636 ANKEILVRDVNRFHHFRNGVCSCGDYW 662
            ++EI++RDV RFHHF+NG CSCGDYW
Sbjct: 860 VDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 202/439 (46%), Gaps = 21/439 (4%)

Query: 25  LPPKPSSVCCCVSLNSSTTPTSLSSRNKN-----ELIQSLCKQGNLRQA----LDVLSIE 75
           L   P+SV   V+      P+   S++ +     +L++S  +   LR+A    +D++ + 
Sbjct: 29  LRATPTSVTDDVASTVYGAPSKFISQSHSPEWWIDLLRSKVRSNLLREAVLTYIDMIVLG 88

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTK-LINVYSHFDSVDDA 134
             P    +  LL +      +     +H+H+   G+  D   V   L+N+Y         
Sbjct: 89  IKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 148

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
             VFD+   R    WN+L  +L    + E  LE +R M      +    FT   V  AC 
Sbjct: 149 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM--LDEDVEPSSFTLVSVALACS 206

Query: 195 ASSCGFSLLKHGKEIHASVLRHG-YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                  LL  GK++HA  LR G  N    I+ TL+ MY + G +  +  +      +++
Sbjct: 207 NFPMPEGLLM-GKQVHAYGLRKGELNSF--IINTLVAMYGKMGKLASSKVLLGSFEGRDL 263

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+ +++   +N    EALE  REM++E  +  P+  T+ SVL AC+ L  L  GK +H
Sbjct: 264 VTWNTVLSSLCQNEQFLEALEYLREMVLEGVE--PDGFTISSVLPACSHLEMLRTGKELH 321

Query: 314 GYILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
            Y L+ G LD    V SALV MY  C ++  G  VFD M  R +  WN++I+ Y  + Y 
Sbjct: 322 AYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYD 381

Query: 373 GKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
            +A+ +F EM    G+  +  +   V+ AC  +G   + + +   + K  + R      A
Sbjct: 382 EEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNA 441

Query: 432 CMVDLLGRANKLEEAAKII 450
            M D+  R  K++ A +I 
Sbjct: 442 LM-DMYSRLGKIDIAKRIF 459


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/577 (41%), Positives = 355/577 (61%), Gaps = 7/577 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +   C     +S    VHS      F ++      L+++YS    +D A+ VF +   R+
Sbjct: 151 VFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 210

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  + ++       G   E ++L+  M   G  I  D +T T VL  C      + LL  
Sbjct: 211 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEG--ISPDVYTVTAVLNCCAR----YRLLDE 264

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK +H  +  +     + +   L+DMYA+ G +  A  VFS+M VK+++SW+ +I  Y++
Sbjct: 265 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSK 324

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           N  A EAL LF  +++E     P+  T+  VL ACA+L+A ++G+ IHGYI+R G  S  
Sbjct: 325 NCYANEALSLFN-LLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 383

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V ++LV MYA+CG L L   +FD +  +D+VSW  +I+ YG+HG+G +AI +F +M   
Sbjct: 384 HVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQA 443

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+    ISFVS+L ACSH+GLV+EG   F  MR E  I P+VEHYAC+VD+L R   L +
Sbjct: 444 GIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIK 503

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A + IE++ I P   +WG+LL  CRIH +V+LAE+ ++++FELEP N G YVL+A++YA 
Sbjct: 504 AYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAE 563

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
           A+ W++VKR+++ +  RGL+K PG S IE+K ++  FV+ D  +P+ E + A L  + A 
Sbjct: 564 AEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRAR 623

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           M E+GY P TK  L D +  EKE  + GHSEKLA+A G+I++  G+ IR+TKNLR+C DC
Sbjct: 624 MIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDC 683

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H   KF+SK   +EI++RD NRFH F++G CSC  +W
Sbjct: 684 HEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 184/364 (50%), Gaps = 13/364 (3%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+  L K G+   ++     ++S       +T+  +  S +   S+     +H  +  
Sbjct: 13  NILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILK 72

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GF +   +   L+  Y     VD AR VFD+   R +  WN++       G  E+ L +
Sbjct: 73  SGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSV 132

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M    +GI  D  T   V   C  S     L+  G+ +H+  ++  ++       TL
Sbjct: 133 FVQM--LVSGIEIDLATIVSVFAGCADS----RLISLGRAVHSIGVKACFSREDRFCNTL 186

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +DMY++ G +  A  VF +M+ ++VVS+++MIA YAR G+A EA++LF E  ME   + P
Sbjct: 187 LDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE--MEEEGISP 244

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +  T+ +VL  CA    L++GK +H +I    L   + V +AL+ MYA+CG ++  + VF
Sbjct: 245 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF 304

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLV 407
             M  +D++SWN++I  Y  + Y  +A+ +F  ++     SP   +   VL AC+     
Sbjct: 305 SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAF 364

Query: 408 EEGK 411
           ++G+
Sbjct: 365 DKGR 368



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 176/339 (51%), Gaps = 16/339 (4%)

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+ +      WN L   L  +G     + L+++M    +G+  D +T++     CV+ S
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKM--MSSGVEMDSYTFS-----CVSKS 53

Query: 198 CGFSLLKH---GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
             FS L+    G+++H  +L+ G+     +  +L+  Y +   V  A  VF +M  ++V+
Sbjct: 54  --FSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVI 111

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           SW+++I  Y  NG+A + L +F +M++   ++  +  T+VSV   CA    +  G+ +H 
Sbjct: 112 SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEI--DLATIVSVFAGCADSRLISLGRAVHS 169

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
             ++          + L+ MY++CG L+  + VF  M  R VVS+ S+I+ Y   G  G+
Sbjct: 170 IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGE 229

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A+++F+EM   G+SP   +  +VL  C+   L++EGK + E + KE+ +   +     ++
Sbjct: 230 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWI-KENDLGFDIFVSNALM 288

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
           D+  +   ++EA  +  ++R++     W +++G    +C
Sbjct: 289 DMYAKCGSMQEAELVFSEMRVKDIIS-WNTIIGGYSKNC 326



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 107/253 (42%), Gaps = 23/253 (9%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P + T   +L +C   ++      +H ++  NG+  D  +   L+++Y+   ++  A  
Sbjct: 345 SPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHM 404

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FD    + +  W  +     + G G+E + L+ +M     GI +D  ++  +L AC  S
Sbjct: 405 LFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMR--QAGIEADEISFVSLLYACSHS 462

Query: 197 SC------GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
                    F++++H  +I  +V  +           ++DM AR G ++ A      M +
Sbjct: 463 GLVDEGWRFFNIMRHECKIEPTVEHY---------ACIVDMLARTGDLIKAYRFIENMPI 513

Query: 251 -KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP-NSVTMVSVLQACAALAALEQ 308
             +   W A++ C  R     +  E   E + E   L P N+   V +    A     EQ
Sbjct: 514 PPDATIWGALL-CGCRIHHDVKLAEKVAEKVFE---LEPENTGYYVLMANIYAEAEKWEQ 569

Query: 309 GKMIHGYILRRGL 321
            K +   I +RGL
Sbjct: 570 VKRLRKRIGQRGL 582


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/638 (39%), Positives = 391/638 (61%), Gaps = 36/638 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSI----EPNPTQHTYELLLLSCTHHNSLSDALNVHSH-LT 107
           N +I S  +     +AL  L +       P   T+  +L +C+H + L     +H++ L 
Sbjct: 185 NSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALR 244

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            +   ++ F+ + L+++Y +   V+  R VFD    R I +WNA+      +   E+ L 
Sbjct: 245 TDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALM 304

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+  M     G+ S+  T + ++ A V   C     K G  IH  V++ G     ++   
Sbjct: 305 LFIEMEAA-AGLYSNATTMSSIVPAYV--RCEGISRKEG--IHGYVIKRGLETNRYLQNA 359

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM--IME--S 283
           LIDMY+R G +  +  +F  M  +++VSW+ +I  Y   G + +AL L  EM  I E  +
Sbjct: 360 LIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKST 419

Query: 284 HD----------LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
           +D            PNS+T+++VL  CA+L+AL +GK IH Y +R  L S + V SALV 
Sbjct: 420 YDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVD 479

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-----VS 388
           MYA+CG L L + VFD M  R+V++WN +I +YG+HG G +++++F++M+  G     V 
Sbjct: 480 MYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVK 539

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
           P+ ++F+++  +CSH+G+V+EG  LF  M+ EH I P+ +HYAC+VDL+GRA K+EEA  
Sbjct: 540 PTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYG 599

Query: 449 IIEDLRIEPGP----KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
           ++  +   P        W SLLG+CRI+ N+E+ E A++ L +L+P  A +YVLL+++Y+
Sbjct: 600 LVNTM---PSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYS 656

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
           +A +WD+   ++R ++A G++K PG S IE   +++ F++ D  HPQ E+LH  L  LS 
Sbjct: 657 SAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSE 716

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
            +K++GYVP T  VL+D+D EEKE I+ GHSEKLA+AFG++NT  G TIR+ KNLR+C D
Sbjct: 717 RLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCND 776

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH+ +KFISK  ++EI++RD  RFHHF++G CSCGDYW
Sbjct: 777 CHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 171/327 (52%), Gaps = 19/327 (5%)

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI--VHIMTTLIDMYA 233
           G+G   D F +  VLKA      G   L  GK+IHA V + GY     V I  TL++MY 
Sbjct: 3   GSGFSPDNFAFPAVLKAVA----GIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYG 58

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G +  A  VF ++  ++ VSW+++I+   R      A++ FR M+ME  +  P+S T+
Sbjct: 59  KCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFE--PSSFTL 116

Query: 294 VSVLQACAAL---AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           VS+  AC+ L     L  GK IHG   R+G        +AL+ MYA+ G+L+  + +   
Sbjct: 117 VSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSN-NALMAMYAKLGRLDDAKSLLVL 175

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
            + RD+V+WNS+ISS+  +    +A+   + M+  GV P  ++F SVL ACSH  L+  G
Sbjct: 176 FEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTG 235

Query: 411 KMLFE-SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           K +   ++R + +I  S    A +VD+     ++ E+ +++ D  ++    +W +++   
Sbjct: 236 KEIHAYALRTDDVIENSFVGSA-LVDMYCNCGQV-ESGRLVFDSVLDRKIGLWNAMIAG- 292

Query: 470 RIHCNVELAERASKRLFELEPTNAGNY 496
             +   E  E+A     E+E   AG Y
Sbjct: 293 --YAQSEHDEKALMLFIEMEAA-AGLY 316



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 148/313 (47%), Gaps = 17/313 (5%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV--TKLINVYSHFDSVDDA 134
           +P    +  +L +      L     +H+H+   G+     +     L+N+Y     + DA
Sbjct: 7   SPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDA 66

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC- 193
             VFD+   R    WN++  AL      E  ++ +R M     G     FT   +  AC 
Sbjct: 67  YKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLM--LMEGFEPSSFTLVSMALACS 124

Query: 194 -VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
            +    G  L   GK+IH    R G+         L+ MYA+ G +  A  +      ++
Sbjct: 125 NLRKRDGLWL---GKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAKSLLVLFEDRD 180

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           +V+W++MI+ +++N    EAL   R M++E   + P+ VT  SVL AC+ L  L  GK I
Sbjct: 181 LVTWNSMISSFSQNERFMEALMFLRLMVLEG--VKPDGVTFASVLPACSHLDLLRTGKEI 238

Query: 313 HGYILRRGLDSILP---VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           H Y LR   D ++    V SALV MY  CG++E G+ VFD +  R +  WN++I+ Y   
Sbjct: 239 HAYALRT--DDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQS 296

Query: 370 GYGGKAIQIFKEM 382
            +  KA+ +F EM
Sbjct: 297 EHDEKALMLFIEM 309


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/585 (42%), Positives = 360/585 (61%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T    L +C           +HS L       D FL   LI++YS  +S+DDAR V
Sbjct: 210 PNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLV 269

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F     R +  WNA+    +     EE   L+  M+  G G   ++ T + VLK+  A  
Sbjct: 270 FKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGF--NQTTLSTVLKSIAALQ 327

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
             +      ++IHA  L+ G+    +++ +LID Y + G V  A  VF +  + ++V ++
Sbjct: 328 ANYMC----RQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFT 383

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           +++  YA++G   EAL L+ EM  +   + P+S    S+L ACA+L+A EQGK +H +IL
Sbjct: 384 SLVTAYAQDGQGEEALRLYLEM--QDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL 441

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G  S +   ++LV MYA+CG +E   C F  +  R +VSW+++I     HGYG +A+Q
Sbjct: 442 KFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQ 501

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +FK+M+  GV P+ I+ VSVL AC+HAGLV E K  F SM+    I P  EHYACM+DLL
Sbjct: 502 LFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLL 561

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA KLE A +++  +  +    VWG+LLG+ RIH N++L E+A++ L  LEP  +G +V
Sbjct: 562 GRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHV 621

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LLA++YA+  MWD+V RV+RL++   ++K PG S +EVK K+Y+F+  D  H +  +++A
Sbjct: 622 LLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYA 681

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  LS  +K+ GYVP  ++ L+D++  EKE+++  HSEKLAVAFGLI T  G  IR+ K
Sbjct: 682 KLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGAPIRVKK 741

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH+  KFISK  ++EI+VRD NRFHHFR G CSCG+YW
Sbjct: 742 NLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 194/398 (48%), Gaps = 39/398 (9%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
           + +L I+ N  +  +  +L +CT    L     VH  +   GFD D F+   L+ +Y+  
Sbjct: 1   MHLLGIKCN--EFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKC 58

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
               DAR +FD    R++  WNALF     +    E + L+  M    +GIR + F+ + 
Sbjct: 59  GGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDM--VLSGIRPNEFSLSS 116

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           ++  C     G      G++IH  +++ GY+        L+DMYA+ G +  A  VF ++
Sbjct: 117 MINVCT----GLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEI 172

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
           A  ++VSW+A+IA    +     ALEL REM      +CPN  T+ S L+ACA +A  E 
Sbjct: 173 AKPDIVSWNAIIAGCVLHEYHHRALELLREM--NKSGMCPNMFTLSSALKACAGMALREL 230

Query: 309 GKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
           G+ +H  +++   G DS L V   L+ MY++C  ++  + VF  M +RD+++WN++IS +
Sbjct: 231 GRQLHSSLIKMDMGSDSFLGV--GLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGH 288

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP- 425
             +    +A  +F  M   G+  +  +  +VL + +             +++  +M R  
Sbjct: 289 SQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIA-------------ALQANYMCRQI 335

Query: 426 ---------SVEHYAC--MVDLLGRANKLEEAAKIIED 452
                      ++Y    ++D  G+   +E+A ++ E+
Sbjct: 336 HALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEE 373



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 167/316 (52%), Gaps = 12/316 (3%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           GI+ + F +  VLKAC  +      L  GK++H  V+  G++    +  +L+ +YA+ G 
Sbjct: 5   GIKCNEFAFPSVLKACTVTKD----LVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
              A  +F  +  ++VVSW+A+ +CY  + M  EA+ LF +M++    + PN  ++ S++
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSG--IRPNEFSLSSMI 118

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
             C  L    QG+ IHGY+++ G DS     +ALV MYA+ G LE    VFD + K D+V
Sbjct: 119 NVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIV 178

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           SWN++I+   +H Y  +A+++ +EM   G+ P+  +  S L AC+   L E G+ L  S+
Sbjct: 179 SWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSL 238

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
            K  M   S      ++D+  + N +++ A+++  L  E     W +++     H   E 
Sbjct: 239 IKMDMGSDSFLGVG-LIDMYSKCNSMDD-ARLVFKLMPERDMIAWNAVISG---HSQNEE 293

Query: 478 AERASKRLFELEPTNA 493
            E A+  LF L  T  
Sbjct: 294 DEEAAS-LFPLMHTEG 308



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 8/199 (4%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           LR  L++      P       LL +C   ++      VH H+   GF  D F    L+N+
Sbjct: 399 LRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNM 458

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
           Y+   S++DA   F +   R I  W+A+   L   G G+E L+L+++M     G+  +  
Sbjct: 459 YAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQM--LKVGVPPNHI 516

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASV-LRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           T   VL AC  +     L+   K    S+ +  G   +      +ID+  R G +  A  
Sbjct: 517 TLVSVLCACNHA----GLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAME 572

Query: 244 VFSQMAVK-NVVSWSAMIA 261
           + ++M  + N + W A++ 
Sbjct: 573 LVNKMPFQANALVWGALLG 591


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/582 (38%), Positives = 369/582 (63%), Gaps = 9/582 (1%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           H Y+  + +C    +L +   VH+H+    +    +L T+LI +Y    ++DDAR+V D 
Sbjct: 42  HDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDG 101

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
              R +  W A+    + +GR  E LEL+ RM     G +++ FT   VL +C       
Sbjct: 102 MPERNVVSWTAMISGYSQSGRHAEALELFIRM--LRAGCKANEFTLATVLTSCPVHQS-- 157

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             ++  +++H+ V++  +   + + ++L+DMY + G +  A  VF  +  ++ VS +A+I
Sbjct: 158 --IQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAII 215

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           + YA+ G+  EAL+LFR++   S  +  N VT  ++L + + LA+L  GK +HG ILR+ 
Sbjct: 216 SGYAQLGLDDEALDLFRQLY--SSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKE 273

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           L   + + ++L+ MY++CGKL   + VFD+M +R  +SWN+++  YG HG G + +Q+F+
Sbjct: 274 LPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFR 333

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
            M    V P  ++ ++VL  CSH GLV+EG  +F+ + KE      + HY C++DLLGR+
Sbjct: 334 TMTEE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRS 392

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            +L++A  +IE +  EP P +WGSLLG+CR+H NV + E  +++L ++EP NAGNYV+L+
Sbjct: 393 GQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILS 452

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YAAA MW +V RV++L+    + K P +S I + + +++F S + FHP+ + ++A + 
Sbjct: 453 NIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIK 512

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            +  ++K  G+VP    VL+D+D E+KER++LGHSEKLA+ FGL+NT  G TI++ KNLR
Sbjct: 513 EVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLR 572

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH+F KF+SK   +EI +RD NRFH  ++G C+CGDYW
Sbjct: 573 ICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 154/294 (52%), Gaps = 13/294 (4%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
            + T   +L SC  H S+     VHS +    F+   F+ + L+++Y    ++ +AR VF
Sbjct: 141 NEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVF 200

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           D    R      A+       G  +E L+L+R++    +G++ +  T+T +L     S  
Sbjct: 201 DMLPERDTVSCTAIISGYAQLGLDDEALDLFRQL--YSSGMQCNYVTFTTLL----TSLS 254

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
           G + L +GK++H  +LR      + +  +LIDMY++ G ++Y+  VF  M  ++ +SW+A
Sbjct: 255 GLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNA 314

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           M+  Y R+G+  E ++LFR M   + ++ P+SVT+++VL  C+    +++G  I   I++
Sbjct: 315 MLMGYGRHGIGQEVVQLFRTM---TEEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVK 371

Query: 319 RGLDSILPV--VSALVTMYARCGKLELGQCVFDHMDKRDVVS-WNSLISSYGVH 369
              ++++ +     ++ +  R G+L+    + +HM      + W SL+ +  VH
Sbjct: 372 EQ-NAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVH 424


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/589 (39%), Positives = 368/589 (62%), Gaps = 10/589 (1%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P      Y +LL  C +  ++ +   VH+H+    +    +L T+LI +Y+  + +  AR
Sbjct: 6   PEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCAR 65

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
           HVFD+ R R +  W A+    +  G   E L L+ +M  + T    + FT+  VL +C  
Sbjct: 66  HVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDT--EPNEFTFATVLSSCT- 122

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
              GFS  + G++IH+ + +  Y   + + ++L+DMYA+ G +  A  VF  +  ++VVS
Sbjct: 123 ---GFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 179

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
            +A+I+ YA+ G+  EALELF  +  E   +  N VT  S+L A + LAAL+ GK +H +
Sbjct: 180 CTAIISGYAQLGLDEEALELFCRLQREG--MSSNYVTYASLLTALSGLAALDHGKQVHSH 237

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           +LR  L   + + ++L+ MY++CG L   + +F++M  R V+SWN+++  Y  HG G + 
Sbjct: 238 VLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEV 297

Query: 376 IQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHMIRPSVEHYACM 433
           +++FK M     V P  ++F++VL  CSH GL ++G  +F E M     I   +EHY C+
Sbjct: 298 VKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCV 357

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           +DLLGRA ++EEA ++I+ +  EP   +WGSLLG+CR+H N  + E    RL E+EP NA
Sbjct: 358 IDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENA 417

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           GNYV+L+++YA+A  W++V+ V+ L+  + + K PGRS IE+ + +++F + D  HP+ E
Sbjct: 418 GNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRRE 477

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           ++   +  L  + KE GYVP    VLYD+D E+KE+I+LGHSEKLA+AFGLI+TS+G  +
Sbjct: 478 EVFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPL 537

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+ KNLR+C DCH+F KF+SK   +++ +RD NRFHH   G+CSCGDYW
Sbjct: 538 RVIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 163/322 (50%), Gaps = 14/322 (4%)

Query: 55  LIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    ++G   +AL     +L  +  P + T+  +L SCT  +       +HSH+    
Sbjct: 82  MISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRN 141

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           ++   F+ + L+++Y+    + +AR VF+    R +    A+       G  EE LEL+ 
Sbjct: 142 YENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFC 201

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           R+     G+ S+  TY  +L A      G + L HGK++H+ VLR      V +  +LID
Sbjct: 202 RLQ--REGMSSNYVTYASLLTAL----SGLAALDHGKQVHSHVLRCELPFYVVLQNSLID 255

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MY++ G + YA  +F+ M V+ V+SW+AM+  Y+++G   E ++LF+ ++ E + + P+S
Sbjct: 256 MYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFK-LMREENKVKPDS 314

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRG--LDSILPVVSALVTMYARCGKLELGQCVF 348
           VT ++VL  C+     ++G  +   ++  G  +++ +     ++ +  R G++E    + 
Sbjct: 315 VTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELI 374

Query: 349 DHMDKRDVVS-WNSLISSYGVH 369
             M      + W SL+ +  VH
Sbjct: 375 KKMPFEPTAAIWGSLLGACRVH 396


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/642 (40%), Positives = 358/642 (55%), Gaps = 74/642 (11%)

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
           +C   ++L  A  VH   + +GFD D F+ + L+++Y   + + DA  VFD+     +  
Sbjct: 123 ACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVS 182

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGT------------------------------- 177
           W+AL  A    G  +E   L+  M  +G                                
Sbjct: 183 WSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMH 242

Query: 178 --GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
             G   D  T + VL A          L  G  IH  V++ G      + + LIDMY + 
Sbjct: 243 LRGFEPDGTTISSVLPAV----GDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKC 298

Query: 236 GCVMYAGFVFSQM-----------------------------AVK------NVVSWSAMI 260
            C      VF QM                              +K      NVVSW++MI
Sbjct: 299 SCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMI 358

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           AC ++NG   EALELFREM +    + PNSVT+  +L AC  +AAL  GK  H + LRRG
Sbjct: 359 ACCSQNGRDIEALELFREMQIAG--VKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRG 416

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           + + + V SAL+ MYA+CG+++  +  FD +  +++V WN++I+ Y +HG   +A++IF 
Sbjct: 417 ISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFD 476

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
            M   G  P  ISF  VL ACS +GL EEG   F SM  ++ I   VEHYACMV LL RA
Sbjct: 477 LMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRA 536

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            KLE+A  +I  + + P   VWG+LL SCR+H NV L E A+++LFELEP+N GNY+LL+
Sbjct: 537 GKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLS 596

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YA+  MW+EV RV+ +++ +GL+K PG S IEVK K++  ++ D+ HPQ  Q+   L 
Sbjct: 597 NIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLD 656

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            LS EMK+ GY P+   VL D++ ++KE+I+ GHSEKLAV FGL+NT  G  +++ KNLR
Sbjct: 657 KLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLR 716

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH   KFIS F  +EI VRD NRFHHF+ G CSCGDYW
Sbjct: 717 ICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 178/410 (43%), Gaps = 46/410 (11%)

Query: 67  QALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS 126
           QAL +L    +  QHT    L S T   SLS     H+H+   G   D  L TKL++ Y+
Sbjct: 6   QALALL----DSVQHTIFNCLNSTT--ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYA 59

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
           +     DA  V D      ++ ++ L  A +   +    L  + +M     G+  D    
Sbjct: 60  NNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQM--LTRGLMPDNRVL 117

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
              +KAC     G S LK  +++H      G++    + ++L+ MY +   +  A  VF 
Sbjct: 118 PSAVKACA----GLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFD 173

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREM--------------------------- 279
           +M   +VVSWSA++A YAR G   EA  LF EM                           
Sbjct: 174 RMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSE 233

Query: 280 ------IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
                  M      P+  T+ SVL A   L  L  G +IHGY++++GL S   V SAL+ 
Sbjct: 234 AVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALID 293

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MY +C        VFD MD  DV S N+ I     +G    ++++F+++   G+  + +S
Sbjct: 294 MYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVS 353

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
           + S++  CS  G   E   LF  M+    ++P+     C++   G    L
Sbjct: 354 WTSMIACCSQNGRDIEALELFREMQIAG-VKPNSVTIPCLLPACGNIAAL 402



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 104/238 (43%), Gaps = 13/238 (5%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           L + + +  ++PN    T   LL +C +  +L      H      G   D ++ + LI++
Sbjct: 373 LFREMQIAGVKPNSV--TIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDM 430

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
           Y+    +  +R  FD    + +  WNA+     + G+ +E +E++  M  +G   + D  
Sbjct: 431 YAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQ--KPDII 488

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASV-LRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           ++T VL AC  S     L + G     S+  ++G    V     ++ + +R G +  A  
Sbjct: 489 SFTCVLSACSQS----GLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYA 544

Query: 244 VFSQMAVK-NVVSWSAMI-ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
           +  +M V  +   W A++ +C   N ++    E+  E + E     P +  ++S + A
Sbjct: 545 MIRRMPVNPDACVWGALLSSCRVHNNVSLG--EVAAEKLFELEPSNPGNYILLSNIYA 600


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/594 (41%), Positives = 365/594 (61%), Gaps = 10/594 (1%)

Query: 72  LSIEPNPTQHT-YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           LS  P P  H  Y  +L SC    ++     +H+ L  +G   D  L T+L+++Y+    
Sbjct: 54  LSPCPYPYNHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGL 113

Query: 131 VDDARHVFDKTRRR-TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           V  AR +FD+   +  +++WN L RA    G  E  +ELYR M   G+ +  D FTY  V
Sbjct: 114 VSVARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGS-MEPDNFTYPPV 172

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           LKAC A       L  G+E+H  V+R  +   V +   LIDMYA+ GCV  A  VF    
Sbjct: 173 LKACAA----LLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTT 228

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
           V++ V W++MIA   +NG   EAL L R M  E   + P  VT+VS + A A   AL +G
Sbjct: 229 VRDAVVWNSMIAACGQNGRPAEALALCRNMAAEG--IAPTIVTLVSAISAAADAGALPRG 286

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           + +HGY  RRG  S   + ++L+ MYA+ G + + + +FD +  R+++SWN++I  +G+H
Sbjct: 287 RELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMH 346

Query: 370 GYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           G+   A ++F+ M     V P  I+FV VL AC+H G+V+E K +F+ M   + I+P V+
Sbjct: 347 GHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQ 406

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
           HY C+VD+LG + + +EA+ +I+ + ++P   +WG+LL  C+IH NVELAE A  +L EL
Sbjct: 407 HYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIEL 466

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
           EP +AGNYVLL+++YA +  W+E  RV++L+  RGL+K+   S IE+K K + F+  D  
Sbjct: 467 EPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDAS 526

Query: 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
           HP+ ++++  L  L   + + GYVP T  V ++++ +EK  +V GHSE+LA+AFGLI+T 
Sbjct: 527 HPRSDEIYEELERLEGLISQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTP 586

Query: 609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            G  + +TKNLR+CEDCH   K IS+   +EI++RDVNR+HHF NG CSC D+W
Sbjct: 587 PGTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/614 (39%), Positives = 377/614 (61%), Gaps = 13/614 (2%)

Query: 53  NELIQSLCKQGNLRQALD-VLSIEPN---PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G  ++AL+ VL ++     P   T   +L +      L    ++H +   
Sbjct: 217 NTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIR 276

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF +   + T L ++YS   SV+ AR +FD   ++T+  WN++       G  E+ + +
Sbjct: 277 AGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAV 336

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M     GI     T    L AC         L+ GK +H  V +      + +M +L
Sbjct: 337 FEKM--LEEGIDPTGVTIMEALHAC----ADLGDLERGKFVHKFVDQLNLGSDISVMNSL 390

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MY++   V  A  +F+ +  +  VSW+AMI  YA+NG   EAL  F EM  +S  + P
Sbjct: 391 ISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM--KSLGMKP 448

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +S TMVSV+ A A L+     K IHG I+R  LD  + V +ALV MY++CG + + + +F
Sbjct: 449 DSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLF 508

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D +  R V++WN++I  YG HG G  A+ +F +M    V P+ I+++SV+ ACSH+GLV+
Sbjct: 509 DMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVD 568

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG   F+SM++++ + PS++HY  MVDLLGRA +++EA   IE++ I PG  V+G+  G+
Sbjct: 569 EGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGA 628

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C+IH N+E+ E+A+K+LFEL P   G +VLLA++YA+   W +V  V++ +E +GL+K P
Sbjct: 629 CKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTP 688

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +E++ +++SF S    HPQ ++++A L  L  E+K  GYVP T ++L D++ + +E
Sbjct: 689 GCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQE 747

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           +++  HSEKLA+AFGL+NTS G TI + KNLR+C DCH+ TK+IS    +EI+VRD+ RF
Sbjct: 748 QLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRF 807

Query: 649 HHFRNGVCSCGDYW 662
           HHF+NG+CSCGDYW
Sbjct: 808 HHFKNGICSCGDYW 821



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 185/334 (55%), Gaps = 11/334 (3%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
           +H   +LL  CT    L   + +   +  NG   +    TKL++++S + S+++A  VF+
Sbjct: 49  KHPAAVLLELCTSMKELHQIIPL---VIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFE 105

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
               +   +++ + +        E  L    RM      ++   + +TY+LK C  ++  
Sbjct: 106 PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDD--VKPVVYNFTYLLKVCGDNAD- 162

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
              LK GKEIH  ++ + +   V  MT +++MYA+   +  A  +F +M  +++VSW+ +
Sbjct: 163 ---LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTI 219

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           IA +++NG A +ALEL   M  E     P+S+T+V+VL A A +  L  GK IHGY +R 
Sbjct: 220 IAGFSQNGFAKKALELVLRMQDEGQR--PDSITLVTVLPAAADVGLLMVGKSIHGYAIRA 277

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           G   ++ + +AL  MY++CG +E  + +FD MD++ VVSWNS++  Y  +G   KAI +F
Sbjct: 278 GFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVF 337

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           ++M+  G+ P+ ++ +  L AC+  G +E GK +
Sbjct: 338 EKMLEEGIDPTGVTIMEALHACADLGDLERGKFV 371



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 148/309 (47%), Gaps = 12/309 (3%)

Query: 207 KEIHASVLRHGYNGIVH---IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
           KE+H  +     NG+ +     T L+ +++++G +  A  VF  +  K    +  M+  Y
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           A+N     AL     M  +  D+ P       +L+ C   A L++GK IHG ++     +
Sbjct: 123 AKNSSLETALAFLCRMRYD--DVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA 180

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            +  ++ +V MYA+C +++    +FD M +RD+VSWN++I+ +  +G+  KA+++   M 
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
             G  P  I+ V+VL A +  GL+  GK +     +    +  V     + D+  +   +
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAK-LVNISTALADMYSKCGSV 299

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE--LEPTNAGNYVLLAD 501
            E A++I D   +     W S++     +   E A    +++ E  ++PT      ++  
Sbjct: 300 -ETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV---TIMEA 355

Query: 502 VYAAADMWD 510
           ++A AD+ D
Sbjct: 356 LHACADLGD 364


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/654 (38%), Positives = 387/654 (59%), Gaps = 44/654 (6%)

Query: 42  TTPTSLSSRNKNELIQSLCKQG----NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLS 97
           + PT+L+ ++   +I+     G    +L   + +L+    P  + +  +L SCT    L 
Sbjct: 67  SPPTTLAWKS---IIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLR 123

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA----------------------- 134
              +VH  +   G   D +    L+N+YS F S+++                        
Sbjct: 124 FGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKES 183

Query: 135 ------RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
                 R VF+   +R I  WN +       G  E+ L + R M      +R D FT + 
Sbjct: 184 YYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMG--NADLRPDSFTLSS 241

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           VL          +LLK GKEIH   +R+GY+  V I ++LIDMYA+   V  +  VF  +
Sbjct: 242 VLPIFAEY---VNLLK-GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYML 297

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
              + +SW+++IA   +NGM  E L+ F++M++    + PN V+  S++ ACA L  L  
Sbjct: 298 PQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAK--IKPNHVSFSSIMPACAHLTTLHL 355

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           GK +HGYI+R   D  + + SALV MYA+CG +   + +FD M+  D+VSW ++I  Y +
Sbjct: 356 GKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYAL 415

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           HG+   AI +FK M   GV P+ ++F++VL ACSHAGLV+E    F SM +++ I P +E
Sbjct: 416 HGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLE 475

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
           HYA + DLLGR  +LEEA + I D+ IEP   VW +LL +CR+H N+ELAE+ SK+LF +
Sbjct: 476 HYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTV 535

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
           +P N G YVLL+++Y+AA  W + ++++  +  +G++K P  S IE+K K+++FV+ D+ 
Sbjct: 536 DPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKS 595

Query: 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
           HP +++++  L  L  +M+ +GYV  T  VL+D++ E+K  ++  HSE+LA+ FG+I+T 
Sbjct: 596 HPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTP 655

Query: 609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            G TIR+TKNLR+C DCH+ TKFISK   +EI+VRD +RFHHF++G CSCGD+W
Sbjct: 656 AGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 135/296 (45%), Gaps = 37/296 (12%)

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM-AVKNVVSWSAMIACY 263
             K++HA +LR        +++T++ +Y+    +  +  +F+ + +    ++W ++I CY
Sbjct: 23  QAKQLHAQILRTSLPS-PSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCY 81

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
             +G+   +L  F +M+       P+     SVL++C  +  L  G+ +HG I+R G+  
Sbjct: 82  TSHGLFLHSLSFFIQMLASGK--YPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGF 139

Query: 324 ILPVVSALVTMYARCGKLE---------------------------LGQC--VFDHMDKR 354
            L   +AL+ MY++   LE                           LG    VF+ M KR
Sbjct: 140 DLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKR 199

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA-CSHAGLVEEGKML 413
           D+VSWN++IS    +G    A+ + +EM    + P   +  SVL     +  L++  ++ 
Sbjct: 200 DIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIH 259

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
             ++R  +     V   + ++D+  +  +++++ ++   L    G   W S++  C
Sbjct: 260 GYAIRNGY--DADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGIS-WNSIIAGC 312


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/583 (41%), Positives = 359/583 (61%), Gaps = 9/583 (1%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           H +  +L SC    SL     +H  L  +G   D  L TKL+++Y+    V  AR +FD 
Sbjct: 63  HHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDG 122

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
             +R +++WN L RA    G  E  + LYR M     G+  D FTY  VLKAC A     
Sbjct: 123 MPKRNVFLWNVLIRAYAREGPREAAVRLYRGM--VEHGVEPDNFTYPLVLKACAA----L 176

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             L+ G+E+H  V    +   V +   ++DMYA+ GCV  A  VF  +AV++ V W++MI
Sbjct: 177 LDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMI 236

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           A Y +NG   EAL L R+M   ++ + P   T+VS + A A  AAL +G+ +HG+  RRG
Sbjct: 237 AAYGQNGRPMEALALCRDM--AANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRG 294

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
                 + ++LV MYA+ G +++ + +F+ + KR++VSWN++I  YG+HG+  +A+ +F 
Sbjct: 295 FGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFN 354

Query: 381 EMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           +M     V+P  I+FV VL AC+H G+VEE K  F  M   + I+P+V+HY C++D+LG 
Sbjct: 355 KMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGH 414

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
             + EEA  +I+ + IEP   +WG+LL  C+IH NVEL E A ++L ELEP +AGNYV L
Sbjct: 415 TGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHL 474

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           +++YA +  W++  RV++L+  RGL+K+   S IE+K K + F+  D  HP+ ++++  L
Sbjct: 475 SNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGEL 534

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
             L   M + GYVP    V +++D +EK  +V  HSE+LA+AFGLI+T  G  + +TKNL
Sbjct: 535 ERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNL 594

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+CEDCH   K IS+   +EI++RDVNR+HHF NG CSC DYW
Sbjct: 595 RVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 158/332 (47%), Gaps = 31/332 (9%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N LI++  ++G    A+ +        +EP+    TY L+L +C     L     VH  +
Sbjct: 132 NVLIRAYAREGPREAAVRLYRGMVEHGVEPD--NFTYPLVLKACAALLDLETGREVHQRV 189

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           +   + QD F+   ++++Y+    VDDAR VFD    R   VWN++  A    GR  E L
Sbjct: 190 SGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEAL 249

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            L R M   G G           L + V+++   + L  G+E+H    R G+     + T
Sbjct: 250 ALCRDMAANGIG------PTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKT 303

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +L+DMYA+ G V  A  +F Q+  + +VSW+AMI  Y  +G A EAL LF +M  ++  +
Sbjct: 304 SLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQ-V 362

Query: 287 CPNSVTMVSVLQACAALAALEQGK-----MIHGYILRRGLDSILPVV---SALVTMYARC 338
            P+++T V VL AC     +E+ K     M++ Y       SI P V   + ++ +    
Sbjct: 363 TPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAY-------SIKPTVQHYTCVIDVLGHT 415

Query: 339 GKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
           G+ E    +   M  + D   W +L++   +H
Sbjct: 416 GRFEEAYDLIKGMSIEPDSGIWGALLNGCKIH 447


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/590 (39%), Positives = 360/590 (61%), Gaps = 21/590 (3%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF------ 138
           +L L  +H N+LS    +H+ +   G   +P ++TK  +  S+ +S+  A          
Sbjct: 20  ILTLLNSHCNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHT 79

Query: 139 --DKTRRRTIYVWNALFRAL--TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
               T     +++N L RA   T   +    L  YR M     G+  ++FT+ +VLK C 
Sbjct: 80  TSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFL-FYRTM--LRYGVTPNKFTFPFVLKGCA 136

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG--CVMYAGFVFSQMAVKN 252
               G   L+ GK +H  V++ G+   VH++ TLI MY   G     +A  VF      +
Sbjct: 137 ----GIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMD 192

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
            V+WSAMIA + R G +  A++LFREM  +   +CP+ +TMVSVL ACA L ALE GK +
Sbjct: 193 TVTWSAMIAGFVRLGCSSRAVDLFREM--QVMGVCPDEITMVSVLSACADLGALELGKWV 250

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
             Y+ ++ +   + + +AL+ M+A+CG ++    +F  MD R +VSW S+I+   +HG G
Sbjct: 251 ESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRG 310

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
             A+ +F EM+ +G++P  ++F+ VL ACSH+GLV++G+  F SM +   I P VEHY C
Sbjct: 311 LDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGC 370

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
           MVDLL R   ++EA + ++ +  EP   +W +++ +C     ++L E  SK L + EP +
Sbjct: 371 MVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMH 430

Query: 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQF 552
             NYVLL+++YA    W++  +V+ +++ RG++KVPG + IEV  +MY FV+ D+ H Q+
Sbjct: 431 ESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQY 490

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
           ++++ ++  +  E+K+ GYVP T  VL D+D E+KE  +  HSEKLA+AF L+NT  G +
Sbjct: 491 KEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTS 550

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IRI KNLR+CEDCHS TKFISK  N+EI+VRD NRFHHF+NG+CSC D+W
Sbjct: 551 IRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 95/241 (39%), Gaps = 41/241 (17%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T   +L +C    +L     V S++      +   L   LI++++   +VD A  +
Sbjct: 226 PDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKL 285

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F +   RTI  W ++   L + GRG + + L+  M     GI  D   +  VL AC  S 
Sbjct: 286 FRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEM--VENGITPDDVAFIGVLSACSHS- 342

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
               L+  G+    S+ R+          +++     +GC                    
Sbjct: 343 ---GLVDKGRYYFGSMERN---------FSIVPKVEHYGC-------------------- 370

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            M+    R G   EA E  ++M  E     PN +   +++ AC A   L+ G+ I   ++
Sbjct: 371 -MVDLLCRGGFVKEAFEFVQKMPFE-----PNQIIWRTIITACHATGELKLGESISKELI 424

Query: 318 R 318
           +
Sbjct: 425 K 425


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/615 (40%), Positives = 363/615 (59%), Gaps = 13/615 (2%)

Query: 53  NELIQSLCKQGNLRQALD----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI +L + G+  +A +    + S      + TY  +L +C+   +L     +HSH+++
Sbjct: 299 NALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISE 358

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +G   D  +   LI++Y+    +  AR +F    +R +  WNA+           E + L
Sbjct: 359 DGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRL 418

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           Y++M   G  ++  R T+ ++L AC  SS        GK IH  +LR G     H+   L
Sbjct: 419 YKQMQSEG--VKPGRVTFLHLLSACANSSA----YADGKMIHEDILRSGIKSNGHLANAL 472

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           ++MY R G +M A  VF     ++V+SW++MIA +A++G    A +LF+EM  ++ +L P
Sbjct: 473 MNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEM--QNEELEP 530

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +++T  SVL  C    ALE GK IHG I   GL   + + +AL+ MY RCG L+  + VF
Sbjct: 531 DNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF 590

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS-FVSVLGACSHAGLV 407
             +  RDV+SW ++I      G   KAI++F +M   G  P   S F S+L AC+HAGLV
Sbjct: 591 HSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLV 650

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
            EG  +F SM  E+ + P++EHY C+V LLGRA + +EA  +I  +   P   VW +LLG
Sbjct: 651 LEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLG 710

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           +CRIH N+ LAE A+    +L   N   Y+LL++VYAAA  WD+V +++R++E RG++K 
Sbjct: 711 ACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKE 770

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           PGRS IEV   ++ F++ D  HP+  +++A L  LS EM+E GY P T+ VL+DL    +
Sbjct: 771 PGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQ 830

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
           E  +  HSE+LA+A+GLI T  G  IRI KNLR+C DCH+ +KFISK   +EI+ RD NR
Sbjct: 831 ETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNR 890

Query: 648 FHHFRNGVCSCGDYW 662
           FH F+NG CSC DYW
Sbjct: 891 FHSFKNGKCSCEDYW 905



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 187/342 (54%), Gaps = 11/342 (3%)

Query: 75  EPNPTQ---HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV 131
           +P PT+    TY  LL +CT    L +A  +H+ + + G   D FL   LIN+Y    SV
Sbjct: 19  QPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSV 78

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
            DA  VF +  RR +  WN+L       G  ++  +L+  M   G     ++ TY  +L 
Sbjct: 79  LDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAG--FIPNKITYISILT 136

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           AC + +     L++GK+IH+ +++ GY     +  +L+ MY + G +  A  VF+ ++ +
Sbjct: 137 ACYSPA----ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR 192

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +VVS++ M+  YA+     E L LF +M   S  + P+ VT +++L A    + L++GK 
Sbjct: 193 DVVSYNTMLGLYAQKAYVKECLGLFGQM--SSEGISPDKVTYINLLDAFTTPSMLDEGKR 250

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           IH   +  GL+S + V +ALVTM  RCG ++  +  F  +  RDVV +N+LI++   HG+
Sbjct: 251 IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGH 310

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
             +A + +  M   GV+ +  +++S+L ACS +  +E GK++
Sbjct: 311 NVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLI 352


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/578 (41%), Positives = 350/578 (60%), Gaps = 30/578 (5%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L+ C +  +LS    VHS    + F++       L+++YS    +D A  VF+K   R 
Sbjct: 257 VLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 316

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  W ++    T  GR +  + L ++M   G  ++ D    T +L AC  S      L +
Sbjct: 317 VVSWTSMIAGYTRDGRSDGAIRLLQQMEKEG--VKLDVVATTSILHACARSGS----LDN 370

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK++H  +  +     + +   L+DMY + G +  A  VFS M VK+++SW+ MI     
Sbjct: 371 GKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIG---- 426

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
                              +L P+S TM  +L ACA+L+ALE+GK IHGYILR G  S  
Sbjct: 427 -------------------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR 467

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +ALV +Y +CG L L + +FD +  +D+VSW  +IS YG+HGYG +AI  F EM   
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDA 527

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ P  +SF+S+L ACSH+GL+E+G   F  M+ +  I P +EHYACMVDLL R   L +
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 587

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A + IE L I P   +WG+LL  CRI+ ++ELAE+ ++R+FELEP N G YVLLA++YA 
Sbjct: 588 AYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAE 647

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE-FHPQFEQLHALLINLSA 564
           A+ W+EVKR++  +  +GL+K PG S IE+K K+  FVS +   HP  +++ +LL  +  
Sbjct: 648 AEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRR 707

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           +MKE+GY P+TK  L + D  +KE  + GHSEKLA+AFGL+     +T+R+TKNLR+C D
Sbjct: 708 KMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGD 767

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH   KF+SK   +EI++RD NRFHHF+NG CSC  +W
Sbjct: 768 CHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 198/460 (43%), Gaps = 86/460 (18%)

Query: 6   SPQTPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSR---NKNELIQSLCKQ 62
           S Q    +  P  T+      P  SS   C+ +  S TPT    R   + N  I   C+ 
Sbjct: 25  SSQNGCFIHKP--TSKATFFSPIFSS---CLPIRISATPTRTIDRQVTDYNAKILHFCQL 79

Query: 63  GNLRQALDVLSI--EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTK 120
           GNL  A++++ +  +      TY  +L  C    SL+D   VHS +  N    D  L  K
Sbjct: 80  GNLENAMELVCMCQKSELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLK 139

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWN----------------ALFRALTLAG---- 160
           L+++Y+    + + R VFD   ++ +Y+WN                 LF+ +   G    
Sbjct: 140 LVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 161 RGEEVLELYRRM-----------------NGTGT------------GIRSDRFTYTYVLK 191
           R E   EL+ ++                 NG               GI  D  T   VL 
Sbjct: 200 RPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLV 259

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
            C  S      L  GK +H+  ++  +   ++   TL+DMY++ G +  A  VF +M  +
Sbjct: 260 GCANS----GTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           NVVSW++MIA Y R+G +  A+ L ++M  E   L  + V   S+L ACA   +L+ GK 
Sbjct: 316 NVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKL--DVVATTSILHACARSGSLDNGKD 373

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +H YI    ++S L V +AL+ MY +CG ++    VF  M  +D++SWN++I        
Sbjct: 374 VHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGE------ 427

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
                          + P   +   +L AC+    +E GK
Sbjct: 428 ---------------LKPDSRTMACILPACASLSALERGK 452



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 125/232 (53%), Gaps = 8/232 (3%)

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  +F ++  ++V+SW++MI+ Y  NG+    LE++++M+    D+  +  T++SVL  C
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDV--DLATIISVLVGC 261

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           A    L  GK +H   ++   +  +   + L+ MY++CG L+    VF+ M +R+VVSW 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           S+I+ Y   G    AI++ ++M   GV    ++  S+L AC+ +G ++ GK + + ++  
Sbjct: 322 SMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKAN 381

Query: 421 HMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           +M       + C  ++D+  +   ++ A  +   + ++     W +++G  +
Sbjct: 382 NM---ESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIIS-WNTMIGELK 429



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 104/251 (41%), Gaps = 15/251 (5%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E  P   T   +L +C   ++L     +H ++  NG+  D  +   L+++Y     +  A
Sbjct: 427 ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLA 486

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R +FD    + +  W  +     + G G E +  +  M     GI  D  ++  +L AC 
Sbjct: 487 RLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMR--DAGIEPDEVSFISILYACS 544

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYN--GIVHIMTTLIDMYARFGCVMYA-GFVFSQMAVK 251
            S     LL+ G      ++++ +N    +     ++D+ +R G +  A  F+ +     
Sbjct: 545 HS----GLLEQGWRFFY-IMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAP 599

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA-ALEQGK 310
           +   W A++ C  R    +  +EL  ++     +L P +     +L    A A   E+ K
Sbjct: 600 DATIWGALL-CGCR---IYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVK 655

Query: 311 MIHGYILRRGL 321
            +   I ++GL
Sbjct: 656 RMREKIGKKGL 666


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/614 (37%), Positives = 379/614 (61%), Gaps = 17/614 (2%)

Query: 55  LIQSLCKQGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           +I    + G + +A    +      IEPN    T+  +L +C+  ++L     +H  +  
Sbjct: 378 MIAGFAQHGRMEEAFLFFNKMIESGIEPNRV--TFMSILGACSRPSALKQGRQIHDRIIK 435

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+  D  + T L+++Y+   S+ DAR+VF++  ++ +  WNA+  A     + +  +  
Sbjct: 436 AGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVAT 495

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           ++ +     GI+ D  T+T +L  C +       L+ GK + + ++R G+   +HI   L
Sbjct: 496 FQAL--LKEGIKPDSSTFTSILNVCKSPDA----LELGKWVQSLIIRAGFESDLHIRNAL 549

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           + M+   G +M A  +F+ M  +++VSW+ +IA + ++G    A + F+  +M+   + P
Sbjct: 550 VSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFK--MMQESGVKP 607

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + +T   +L ACA+  AL +G+ +H  I    LD  + V + L++MY +CG ++    VF
Sbjct: 608 DQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVF 667

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
            ++ K++V SW S+I+ Y  HG G +A+++F +M   GV P  I+FV  L AC+HAGL++
Sbjct: 668 HNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIK 727

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG   FESM K+  I P +EHY CMVDL GRA  L EA + I  ++++P  ++WG+LLG+
Sbjct: 728 EGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGA 786

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C++H +VELAE+ +++  EL+P + G YV+L+++YAAA MW EV ++++++  RG+ K P
Sbjct: 787 CQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKP 846

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G+S IEV  +++ F S D+ HPQ E++HA L  L  EMK+ GYVP T+ VL+D++  EKE
Sbjct: 847 GQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKE 906

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSE+LA+A+GL+ T     I I+KNLR+C DCH+ TK ISK   ++I+ RD NRF
Sbjct: 907 HALCHHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRF 966

Query: 649 HHFRNGVCSCGDYW 662
           HHF++GVCSCGD+W
Sbjct: 967 HHFKDGVCSCGDFW 980



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/408 (29%), Positives = 219/408 (53%), Gaps = 13/408 (3%)

Query: 48  SSRNKNELIQSLCKQGNLRQALDVLSIEPNPT----QHTYELLLLSCTHHNSLSDALNVH 103
           +++  N  +  L K G L +A+ VL    +P     + TY  LL  C  H +L D   +H
Sbjct: 68  NTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIH 127

Query: 104 SHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE 163
           +H+  +    D F+   LI++Y+   + + A+ +FD+   + +Y WN L        R E
Sbjct: 128 NHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYE 187

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           E   L+ +M     G++ D++T+ Y+L AC  +      +  G E+ + +L  G++  + 
Sbjct: 188 EAFRLHEQM--VQDGVKPDKYTFVYMLNACADAKN----VDKGGELFSLILNAGWDTDLF 241

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           + T LI+M+ + G V  A  VF+ +  +++++W++MI   AR+    +A  LF+  +ME 
Sbjct: 242 VGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQ--VMEE 299

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
             + P+ V  VS+L+AC    ALEQGK +H  +   GLD+ + V +AL++MY +CG +E 
Sbjct: 300 EGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMED 359

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              VF+ +  R+VVSW ++I+ +  HG   +A   F +MI  G+ P+ ++F+S+LGACS 
Sbjct: 360 ALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSR 419

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
              +++G+ + + + K   I       A ++ +  +   L +A  + E
Sbjct: 420 PSALKQGRQIHDRIIKAGYITDDRVRTA-LLSMYAKCGSLMDARNVFE 466


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/651 (38%), Positives = 395/651 (60%), Gaps = 25/651 (3%)

Query: 29  PSSVCCCVSLNSSTTPTSLSSRNK-----NELIQSLCKQGNLRQALDVL-SIEPNP---- 78
           P+++    ++ +++TP + ++        N  ++SLCK GNL +AL ++ S +P P    
Sbjct: 8   PTNITVKTNITATSTPRTTNTHKHKTTPFNSTLKSLCKWGNLDKALRLIESSKPTPIEEE 67

Query: 79  -TQHTYELLLLSCTHHNSLSDALNVHSHL--TDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
             + +  L L +C    SL     +H HL  + N   ++P L TKLI +YS    V++AR
Sbjct: 68  EEEESISLFLHACISRRSLEHGRKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEAR 127

Query: 136 HVF--DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
            VF  D  +     VW A+    +  G   E L LYR M      ++   F ++  LKAC
Sbjct: 128 RVFQIDDEKPPEEPVWVAMAIGYSRNGFSHEALLLYRDM--LSCCVKPGNFAFSMALKAC 185

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT-LIDMYARFGCVMYAGFVFSQMAVKN 252
             S    +L+  G+ IHA +++H       ++   L+ +Y   GC      VF +M  +N
Sbjct: 186 --SDLDNALV--GRAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRN 241

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           VVSW+ +IA +A  G  FE L  FR  +M+   +  + +T+ ++L  CA + AL  GK I
Sbjct: 242 VVSWNTLIAGFAGQGRVFETLSAFR--VMQREGMGFSWITLTTMLPVCAQVTALHSGKEI 299

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           HG IL+   ++ +P++++L+ MYA+CG++   + VFD M  +D+ SWN++++ + ++G  
Sbjct: 300 HGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQI 359

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +A+ +F EMI +G+ P+ I+FV++L  CSH+GL  EGK LF ++ ++  ++PS+EHYAC
Sbjct: 360 HEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYAC 419

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
           +VD+LGR+ K +EA  + E++ + P   +WGSLL SCR++ NV LAE  ++RLFE+EP N
Sbjct: 420 LVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNN 479

Query: 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQF 552
            GNYV+L+++YA A MW++VKRV+ ++   G++K  G S I++K K+++FV+      + 
Sbjct: 480 PGNYVMLSNIYANAGMWEDVKRVREMMALTGMKKDAGCSWIQIKHKIHTFVAGGSSDFRC 539

Query: 553 EQLHALLIN-LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
              +  + N LS  +K  GYVP T VVL+D++ E K   V  HSE+LA  F LINT  G 
Sbjct: 540 SAEYKKIWNELSNAVKNLGYVPNTGVVLHDINEEMKAVWVCEHSERLAAVFALINTGAGM 599

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            IRITKNLR+C DCHS+ K +SK   + I++RD NRFHHF NG CSC DYW
Sbjct: 600 PIRITKNLRVCVDCHSWMKAVSKVTRRLIVLRDTNRFHHFENGSCSCKDYW 650


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/641 (38%), Positives = 366/641 (57%), Gaps = 41/641 (6%)

Query: 54  ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           E I  LC Q  LR+A+ +L     P    Y  LL  C    +L +   VH+H+  +G   
Sbjct: 93  EAIDILCGQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SI 151

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
             ++  +L+++Y+   S+ DA  VFD+   R +  WN +       G  E+   L+ +M 
Sbjct: 152 GLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMP 211

Query: 174 GTGTGIRSDRFTYTYVLKACV----------------------ASSCGFSL--------- 202
                   D F++T ++  CV                      ++ C  S          
Sbjct: 212 N------RDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIP 265

Query: 203 -LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L  GK+IH  ++R G +    +  +L+DMY + G +  A ++F +M  ++VVSW+ MI 
Sbjct: 266 SLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIH 325

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            Y +NG   E   LFR ++  + ++ PN  T   VL ACA LAA + GK IH Y++R G 
Sbjct: 326 TYLKNGRREEGFALFRHLM--NSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGF 383

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           DS     SALV MY++CG +E  + VF+ + + D+ SW SL+  Y  HG   KA+  F+ 
Sbjct: 384 DSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFEL 443

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           ++  G  P  I+F+ VL AC+HAGLV++G   F S++++H +  +++HYAC++DLL RA 
Sbjct: 444 LLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAG 503

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
           +  EA  II ++ I+P   +W +LLG CRIH N+ELA+RA+K LFE+EP N   YV LA+
Sbjct: 504 QFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLAN 563

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YA+A M  E   ++  +++RG+ K PG S IE++R+++ F   D  HP+ +++   L  
Sbjct: 564 IYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSE 623

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           LS  MKE GYVP T  VL+D++ E+KE  +  HSEKLAVAFG+I+T  G  I++ KNLR 
Sbjct: 624 LSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRT 683

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCH+  KFIS    ++I+VRD NRFH F  G CSC DYW
Sbjct: 684 CVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/610 (38%), Positives = 383/610 (62%), Gaps = 11/610 (1%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQ-HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           +++LC  G L++AL  ++I     +   Y+ +L  C    ++ +   VH+H+    +   
Sbjct: 65  LKTLCSSGQLKEALLQMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPS 124

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
            +L T+LI +Y+  D + DAR +FD+  ++ +  W A+  A +  G   E L L+  M  
Sbjct: 125 VYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLR 184

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
           + T    + FT+  +L +C  S  GF   + G++IH+  ++  Y   + + ++L+DMYA+
Sbjct: 185 SDT--EPNHFTFATILTSCYGS-LGF---ETGRQIHSIAIKRNYESHMFVGSSLLDMYAK 238

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A  VF  +  ++VV+ +A+I+ YA+ G+  EAL+LFR++ +E  +   NSVT  
Sbjct: 239 SGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMN--SNSVTYA 296

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           SVL A + LAAL  GK +H ++LR G  S + ++++L+ MY++CG +   + +FD M +R
Sbjct: 297 SVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPER 356

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKML 413
             +SWN+++  Y  HG   + +++FK M     V P  I++++VL  CSH  L + G  +
Sbjct: 357 TCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEI 416

Query: 414 FESM-RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           F +M   +  I P + HY C+VDLLGRA ++EEA   I+ +   P   +WGSLLGSCR+H
Sbjct: 417 FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVH 476

Query: 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
            +VE+     ++L ELEP NAGNYV+L+++YA+A  W++++ ++ L++ + + K PGRS 
Sbjct: 477 SDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSW 536

Query: 533 IEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVL 592
           +E+ + +++F + D  HP+ E++   +  LS + KE GYVP    VLYD+D E+KE+++L
Sbjct: 537 VELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLL 596

Query: 593 GHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652
           GHSEKLA+AFGLI T +G TIR+ KNLR+C DCHSF KF+S+   + +++RD NRFH+  
Sbjct: 597 GHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIV 656

Query: 653 NGVCSCGDYW 662
            GVCSCGDYW
Sbjct: 657 GGVCSCGDYW 666


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/619 (41%), Positives = 376/619 (60%), Gaps = 20/619 (3%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I      G + +AL+V       S+  +    T   LL  C   + +   + +H + 
Sbjct: 209 NAMISGFYLNGKVAEALEVFDEMRFKSVSMDSV--TISSLLPICVQLDDIISGVLIHVYA 266

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
              G + D F+   LIN+Y+ F  +  A  +F++ + R I  WN+L  A     +    L
Sbjct: 267 IKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIAL 326

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH--- 223
            +Y +M+  G  +  D  T   V  A VA+  G  L    + IH  V R  +   +H   
Sbjct: 327 GVYNKMHSIG--VVPDLLTL--VSLASVAAELGNFL--SSRSIHGFVTRRCW--FLHDIA 378

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           +   +IDMYA+ G +  A  VF  + VK+V+SW+++I  Y++NG+A EA++++  M   S
Sbjct: 379 LGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYS 438

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
             + PN  T VS+L A + L AL+QG   HG +++  L   + V + LV MY +CGKL  
Sbjct: 439 GAV-PNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLAD 497

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              +F  +  +  VSWN++IS +G+HGYG KA+++FKEM   GV P  I+FVS+L ACSH
Sbjct: 498 ALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSH 557

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
           +GLV+EG+  F+ M++ + IRPS++HY CMVDL GRA  LE+A   ++++ + P   VWG
Sbjct: 558 SGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWG 617

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           +LLG+CRIH NVEL    S  L ++E  N G YVLL+++YA    W+ V  V+ L   RG
Sbjct: 618 ALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRG 677

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
           L+K PG S IEV +K+  F + ++ HP+ E++++ L NL+A+MK  GYVP    VL D++
Sbjct: 678 LKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVE 737

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            +EKE I+  HSE+LA+AFG+I+T    T++I KNLR+C DCH+ TKFISK   +EI+VR
Sbjct: 738 DDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVR 797

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D NRFHHF++GVCSCGDYW
Sbjct: 798 DSNRFHHFKDGVCSCGDYW 816



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 212/426 (49%), Gaps = 16/426 (3%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           +E    +  +  + L CT    +  A  +H+ L  +G  Q  FL  KLIN Y+    +  
Sbjct: 37  VENEKREIDFNRIFLYCT---KVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPH 93

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR  FD+ + + +Y WN++  A    G     ++ +     T + ++SD +T+  V++AC
Sbjct: 94  ARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLST-SFLQSDHYTFPPVIRAC 152

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                    L  G+++H  VL+ G+   V+I  + I  Y+RFG V  A  +F  M ++++
Sbjct: 153 -------GNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDI 205

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
            +W+AMI+ +  NG   EALE+F EM  +S  +  +SVT+ S+L  C  L  +  G +IH
Sbjct: 206 GTWNAMISGFYLNGKVAEALEVFDEMRFKSVSM--DSVTISSLLPICVQLDDIISGVLIH 263

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
            Y ++ GL+  L V +AL+ MYA+ G+L   + +F+ M  RD+VSWNSL++++  +    
Sbjct: 264 VYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPV 323

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
            A+ ++ +M   GV P  ++ VS+    +  G     + +   + +       +     +
Sbjct: 324 IALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAI 383

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH--CNVELAERASKRLFELEPT 491
           +D+  +   ++ A K+ E L ++     W SL+     +   N  +   +S R +     
Sbjct: 384 IDMYAKLGFIDSARKVFEGLPVKDVIS-WNSLITGYSQNGLANEAIDVYSSMRYYSGAVP 442

Query: 492 NAGNYV 497
           N G +V
Sbjct: 443 NQGTWV 448


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/577 (41%), Positives = 365/577 (63%), Gaps = 7/577 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LL  CTH N L++   +H+ L ++ F  D  +   L+N+Y+    +  AR +FD+   R 
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  W AL    +   R ++ L L   M     G++ ++FT   +LKA  AS  G + +  
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEM--LRIGLKPNQFTLASLLKA--ASGVGSTDVLQ 136

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           G+++H   LR+GY+  V++   ++DMYAR   +  A  +F  M  KN VSW+A+IA YAR
Sbjct: 137 GRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYAR 196

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G   +A  LF  M+ E  ++ P   T  SVL ACA++ +LEQGK +H  +++ G   + 
Sbjct: 197 KGQGDKAFCLFSNMLRE--NVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVA 254

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V + L+ MYA+ G +E  + VFD + KRDVVSWNS+++ Y  HG G  A+Q F+EM+  
Sbjct: 255 FVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRT 314

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
            ++P+ I+F+ VL ACSHAGL++EG+  F+ M+K + + P + HY  MVDLLGRA  L+ 
Sbjct: 315 RIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDR 373

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A + I ++ I+P   VWG+LLG+CR+H N+EL   A++ +FEL+    G +VLL ++YA 
Sbjct: 374 AIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYAL 433

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
           A  W++  +V+++++  G++K P  S +E++ +++ FV+ D+ HPQ  ++H +   +S +
Sbjct: 434 AGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDK 493

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           +KE GYVP +  VL  +D +E+E  +  HSEKLA+AF L+NT  G TIRI KN+R+C DC
Sbjct: 494 IKEIGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDC 553

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           HS  KF+SK   +EI+VRD NRFHHF +G CSC DYW
Sbjct: 554 HSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 4/175 (2%)

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           ++L+ C  L  L +GK+IH  +L       L + + L+ +YA+CG L   + +FD M  R
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE--EGKM 412
           DVV+W +LI+ Y  H     A+ +  EM+  G+ P+  +  S+L A S  G  +  +G+ 
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           L   +   +    +V     ++D+  R + LEE A++I D+ +      W +L+ 
Sbjct: 140 L-HGLCLRYGYDSNVYVSCAILDMYARCHHLEE-AQLIFDVMVSKNEVSWNALIA 192



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 12/222 (5%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI    ++G   +A     ++L     PT  TY  +L +C    SL     VH+ +  
Sbjct: 188 NALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIK 247

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G     F+   L+++Y+   S++DA+ VFD+  +R +  WN++    +  G G+  L+ 
Sbjct: 248 WGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQR 307

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M    T I  +  T+  VL AC  +     LL  G+     + ++     +    T+
Sbjct: 308 FEEM--LRTRIAPNDITFLCVLTACSHA----GLLDEGRHYFDMMKKYNVEPQISHYVTM 361

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMI-ACYARNGM 268
           +D+  R G +  A    S+M +K   + W A++ AC     M
Sbjct: 362 VDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNM 403


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/594 (40%), Positives = 358/594 (60%), Gaps = 20/594 (3%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L +C+  +       +H     NG   D F+V  L+ +YS   S+  AR +FDK   R 
Sbjct: 115 VLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERD 174

Query: 146 IYVWNALFRALTLAGRG---------EEVLELYRRMNGTGTG-------IRSDRFTYTYV 189
           +  W+ + RA      G           ++  Y R N    G       I  + F     
Sbjct: 175 VVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDIT 234

Query: 190 LKACVASSCGF-SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           + + + S CGF   ++ GK +HA +LR+G+   + + T L+DMY + G +  A  +F  M
Sbjct: 235 MLSLIIS-CGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSM 293

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             K+V++W+AMI+ YA+      A +LF +M    + + PN +TMVS+L  CA   AL+ 
Sbjct: 294 KNKDVMTWTAMISAYAQANCIDYAFQLFVQM--RDNGVRPNELTMVSLLSLCAVNGALDM 351

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           GK  H YI ++G++  + + +AL+ MYA+CG +   Q +F     RD+ +WN +++ YG+
Sbjct: 352 GKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGM 411

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           HGYG KA+++F EM   GV P+ I+F+  L ACSHAGLV EGK LFE M  +  + P VE
Sbjct: 412 HGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVE 471

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
           HY CMVDLLGRA  L+EA K+IE + + P   +WG++L +C+IH N  + E A++ L  L
Sbjct: 472 HYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLAL 531

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
           EP N G  VL++++YAAA+ W++V  +++ ++  G++K PG S IEV   ++ F   D  
Sbjct: 532 EPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTA 591

Query: 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
           HP  E++  +L  +S ++KE GY+P T VVL+++D EEKE  +  HSEKLA+AFGLI+T+
Sbjct: 592 HPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMAFGLISTA 651

Query: 609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            G  IR+ KNLR+C+DCH+ TK +SK   + I+VRD NRFHHFR G CSCG YW
Sbjct: 652 PGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 163/333 (48%), Gaps = 33/333 (9%)

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           I  D F    VLKAC       S+ + GKEIH   +++G    V ++  L+ MY+  G +
Sbjct: 105 IEVDSFIIPSVLKAC----SQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSL 160

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAF----------------------EALELF 276
           + A  +F +M+ ++VVSWS MI  Y      F                      E   LF
Sbjct: 161 VSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLF 220

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
             MI E  ++ PN +TM+S++ +C  + A++ GK +H YILR G    L + +ALV MY 
Sbjct: 221 VRMIEE--NVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYG 278

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CG++   + +FD M  +DV++W ++IS+Y        A Q+F +M  +GV P+ ++ VS
Sbjct: 279 KCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVS 338

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           +L  C+  G ++ GK  F +   +  +   V     ++D+  +   +  A ++  +  I+
Sbjct: 339 LLSLCAVNGALDMGK-WFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSE-AID 396

Query: 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
                W  ++    +H      E+A K   E+E
Sbjct: 397 RDICTWNVMMAGYGMH---GYGEKALKLFTEME 426



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 147/311 (47%), Gaps = 20/311 (6%)

Query: 67  QALDVLSIEPN--PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           + L V  IE N  P   T   L++SC    ++     +H+++  NGF     L T L+++
Sbjct: 217 ERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDM 276

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
           Y     +  AR +FD  + + +  W A+  A   A   +   +L+ +M     G+R +  
Sbjct: 277 YGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMR--DNGVRPNEL 334

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           T   +L  C  +      L  GK  HA + + G    V + T LIDMYA+ G +  A  +
Sbjct: 335 TMVSLLSLCAVNGA----LDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRL 390

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           FS+   +++ +W+ M+A Y  +G   +AL+LF E  ME+  + PN +T +  L AC+   
Sbjct: 391 FSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTE--METLGVKPNDITFIGALHACSHAG 448

Query: 305 ALEQG-----KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVS 358
            + +G     KMIH +    GL   +     +V +  R G L+    + + M    ++  
Sbjct: 449 LVVEGKGLFEKMIHDF----GLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAI 504

Query: 359 WNSLISSYGVH 369
           W +++++  +H
Sbjct: 505 WGAMLAACKIH 515



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 23/196 (11%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           M   D+  +S  + SVL+AC+ ++    GK IHG+ ++ GL S + VV+AL+ MY+ CG 
Sbjct: 100 MRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGS 159

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGV--HGYGGKAI--------------------QI 378
           L   + +FD M +RDVVSW+++I +Y    +G+  ++I                    ++
Sbjct: 160 LVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERL 219

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
           F  MI   V P+ I+ +S++ +C   G V+ GK L   + +      S+     +VD+ G
Sbjct: 220 FVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNG-FGMSLALATALVDMYG 278

Query: 439 RANKLEEAAKIIEDLR 454
           +  ++  A  I + ++
Sbjct: 279 KCGEIRSARAIFDSMK 294


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/614 (40%), Positives = 369/614 (60%), Gaps = 13/614 (2%)

Query: 53  NELIQSLCKQGNLRQALDV-LSIEPN---PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I  L + G   +A  + L ++     P   TY  LL +     +      VH H  +
Sbjct: 304 NAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVE 363

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   D  + +  +++Y    S+DDA+ +FDK   R +  WNA+   +     G E L L
Sbjct: 364 VGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSL 423

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M   G     D  T+  +L A V    G   L+  KE+H+  +  G   +  +   L
Sbjct: 424 FLQMRREG--FFPDATTFVNILSANV----GEEALEWVKEVHSYAIDAGLVDL-RVGNAL 476

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           + MYA+ G  MYA  VF  M  +NV +W+ MI+  A++G   EA  LF +M+ E   + P
Sbjct: 477 VHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREG--IVP 534

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           ++ T VS+L ACA+  ALE  K +H + +  GL S L V +ALV MYA+CG ++  + VF
Sbjct: 535 DATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVF 594

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M +RDV SW  +I     HG G  A+ +F +M   G  P+  SFV+VL ACSHAGLV+
Sbjct: 595 DDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVD 654

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG+  F S+ +++ I P++EHY CMVDLLGRA +LEEA   I ++ IEPG   WG+LLG+
Sbjct: 655 EGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGA 714

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C  + N+E+AE A+K   +L+P +A  YVLL+++YAA   W++   V+ +++ RG++K P
Sbjct: 715 CVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEP 774

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           GRS IEV  +++SFV  D  HP+ ++++A L +L   +K +GYVP T++VL + D E KE
Sbjct: 775 GRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKE 834

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           + +  HSEKLA+ +GL++T     IR+ KNLR+C DCH+ TKFISK   +EI+ RD  RF
Sbjct: 835 QALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRF 894

Query: 649 HHFRNGVCSCGDYW 662
           HHF++GVCSCGDYW
Sbjct: 895 HHFKDGVCSCGDYW 908



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 220/467 (47%), Gaps = 18/467 (3%)

Query: 55  LIQSLCKQGNLRQALDV-LSIE-----PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           +I  L + G  ++A  + L +E     PN T +   L   + T   +L     VH H   
Sbjct: 203 MIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGK 262

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF  D  +   LI++Y+   S+DDAR VFD    R +  WNA+   L   G G E   +
Sbjct: 263 AGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTI 322

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M     G   D  TY  +L   V++       +  KE+H   +  G    + + +  
Sbjct: 323 FLKMQ--QEGFVPDSTTYLSLLNTHVSTGA----WEWVKEVHKHAVEVGLVSDLRVGSAF 376

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           + MY R G +  A  +F ++AV+NV +W+AMI   A+     EAL LF +M  E     P
Sbjct: 377 VHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREG--FFP 434

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           ++ T V++L A     ALE  K +H Y +  GL   L V +ALV MYA+CG     + VF
Sbjct: 435 DATTFVNILSANVGEEALEWVKEVHSYAIDAGLVD-LRVGNALVHMYAKCGNTMYAKQVF 493

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M +R+V +W  +IS    HG G +A  +F +M+  G+ P   ++VS+L AC+  G +E
Sbjct: 494 DDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALE 553

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
             K +        ++   +     +V +  +   +++A ++ +D+ +E     W  ++G 
Sbjct: 554 WVKEVHSHAVNAGLV-SDLRVGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGG 611

Query: 469 CRIHC-NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514
              H   ++  +   K   E    N  ++V +    + A + DE +R
Sbjct: 612 LAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRR 658



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 193/394 (48%), Gaps = 12/394 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P + TY  +L +C    SL     +H+H+  +GF  D  + T L+N+Y    S+DDA+ 
Sbjct: 27  QPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQL 86

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FDK   R +  W  +   L   GRG+E    + +M     G   + +TY  +L A  ++
Sbjct: 87  IFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQ--REGFIPNSYTYVSILNANASA 144

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+  KE+H+  +  G    + +   L+ MYA+ G +  A  VF  M  +++ SW
Sbjct: 145 GA----LEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSW 200

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA--ALAALEQGKMIHG 314
           + MI   A++G   EA  LF +  ME     PN  T +S+L A A  +  ALE  K +H 
Sbjct: 201 TVMIGGLAQHGRGQEAFSLFLQ--MERGGCLPNLTTYLSILNASAITSTGALEWVKEVHK 258

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
           +  + G  S L V +AL+ MYA+CG ++  + VFD M  RDV+SWN++I     +G G +
Sbjct: 259 HAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHE 318

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A  IF +M   G  P   +++S+L      G  E  K + +   +  ++   +   +  V
Sbjct: 319 AFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLV-SDLRVGSAFV 377

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            +  R   +++A  I + L +      W +++G 
Sbjct: 378 HMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGG 410



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 179/361 (49%), Gaps = 13/361 (3%)

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
           G  E+ +++Y +M   G   + +  TY  +LKAC    C    LK GK+IHA +++ G+ 
Sbjct: 9   GYAEDAMKVYSQMRREGG--QPNEITYLSILKAC----CSPVSLKWGKKIHAHIIQSGFQ 62

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             V + T L++MY + G +  A  +F +M  +NV+SW+ MI   A  G   EA   F +M
Sbjct: 63  SDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQM 122

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
             E     PNS T VS+L A A+  ALE  K +H + +  GL   L V +ALV MYA+ G
Sbjct: 123 QREG--FIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            ++  + VFD M +RD+ SW  +I     HG G +A  +F +M   G  P+  +++S+L 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 400 AC--SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           A   +  G +E  K + +   K   I   +     ++ +  +   +++ A+++ D   + 
Sbjct: 241 ASAITSTGALEWVKEVHKHAGKAGFI-SDLRVGNALIHMYAKCGSIDD-ARLVFDGMCDR 298

Query: 458 GPKVWGSLLGS-CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516
               W +++G   +  C  E      K   E    ++  Y+ L + + +   W+ VK V 
Sbjct: 299 DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVH 358

Query: 517 R 517
           +
Sbjct: 359 K 359



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 2/150 (1%)

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           MI  YA  G A +A++++ +M  E     PN +T +S+L+AC +  +L+ GK IH +I++
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQ--PNEITYLSILKACCSPVSLKWGKKIHAHIIQ 58

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
            G  S + V +ALV MY +CG ++  Q +FD M +R+V+SW  +I     +G G +A   
Sbjct: 59  SGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHR 118

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           F +M   G  P+  ++VS+L A + AG +E
Sbjct: 119 FLQMQREGFIPNSYTYVSILNANASAGALE 148


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/623 (37%), Positives = 374/623 (60%), Gaps = 19/623 (3%)

Query: 46  SLSSRNKNELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDA 99
           +L+SRN   L+   C      Q   +L        EPN   +T+  +L +C     L++ 
Sbjct: 155 NLASRNN--LLSGFCDTETCDQGPRILIQLLVEGFEPN--MYTFISILKTCASKGDLNEG 210

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
             +H  +  +G + D  L   L+NVY+   S + A  VF +   R +  W AL       
Sbjct: 211 KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAE 270

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
           G G   L ++ +M     G   + +T+  +L++C +     S +  GK++HA ++++  +
Sbjct: 271 GYGSG-LRIFNQM--LAEGFNPNMYTFISILRSCSS----LSDVDLGKQVHAQIVKNSLD 323

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
           G   + T L+DMYA+   +  A  +F+++  +++ +W+ ++A YA++G   +A++ F +M
Sbjct: 324 GNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQM 383

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
             E   + PN  T+ S L  C+ +A L+ G+ +H   ++ G    + V SALV MYA+CG
Sbjct: 384 QREG--VKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCG 441

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            +E  + VFD +  RD VSWN++I  Y  HG GGKA++ F+ M+  G  P  ++F+ VL 
Sbjct: 442 CVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLS 501

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           ACSH GL+EEGK  F S+ K + I P++EHYACMVD+LGRA K  E    IE++++    
Sbjct: 502 ACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNV 561

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
            +W ++LG+C++H N+E  ERA+ +LFELEP    NY+LL++++AA  MWD+V  V+ L+
Sbjct: 562 LIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALM 621

Query: 520 EARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579
             RG++K PG S +EV  +++ F+S D  HP+  ++H  L +L  ++   GY P T  VL
Sbjct: 622 STRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVL 681

Query: 580 YDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKE 639
           +++   EK+ ++  HSE+LA+AF L++TS  +TIRI KNLR+C DCH F K IS+  N+E
Sbjct: 682 HNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQE 741

Query: 640 ILVRDVNRFHHFRNGVCSCGDYW 662
           ++VRD+N FHHF+NG CSC ++W
Sbjct: 742 LVVRDINCFHHFKNGSCSCQNFW 764



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 174/356 (48%), Gaps = 16/356 (4%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL---T 157
           ++H+ +   GF+ D  +    + +Y    SV++    F       +   N L        
Sbjct: 111 SIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTE 170

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
              +G  +L     +     G   + +T+  +LK C +       L  GK IH  V++ G
Sbjct: 171 TCDQGPRIL-----IQLLVEGFEPNMYTFISILKTCASK----GDLNEGKAIHGQVIKSG 221

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
            N   H+  +L+++YA+ G   YA  VF ++  ++VVSW+A+I  +   G     L +F 
Sbjct: 222 INPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFN 280

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
           +M+ E  +  PN  T +S+L++C++L+ ++ GK +H  I++  LD    V +ALV MYA+
Sbjct: 281 QMLAEGFN--PNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK 338

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
              LE  + +F+ + KRD+ +W  +++ Y   G G KA++ F +M   GV P+  +  S 
Sbjct: 339 NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASS 398

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           L  CS    ++ G+ L  SM  +      +   + +VD+  +   +E+A  + + L
Sbjct: 399 LSGCSRIATLDSGRQL-HSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL 453



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 176/345 (51%), Gaps = 10/345 (2%)

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           NG   D  L + L+NVY   +S+  AR V ++   + +  WN    +       +E ++L
Sbjct: 18  NGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQL 77

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M  T   IR ++F +  ++ A  A+S G +   +G+ IHA V ++G+   + I    
Sbjct: 78  FYLMRHTR--IRLNQFIFASLISA--AASLGDN--HYGESIHACVCKYGFESDILISNAF 131

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           + MY +   V      F  M ++N+ S + +++ +       +   +  ++++E  +  P
Sbjct: 132 VTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFE--P 189

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N  T +S+L+ CA+   L +GK IHG +++ G++    + ++LV +YA+CG       VF
Sbjct: 190 NMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVF 249

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             + +RDVVSW +LI+ +   GY G  ++IF +M+  G +P+  +F+S+L +CS    V+
Sbjct: 250 GEIPERDVVSWTALITGFVAEGY-GSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVD 308

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            GK +   + K  +        A +VD+  +   LE+A  I   L
Sbjct: 309 LGKQVHAQIVKNSLDGNDFVGTA-LVDMYAKNRFLEDAETIFNRL 352



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 118/247 (47%), Gaps = 3/247 (1%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           K+I   V+++G     H+ ++L+++Y +   +  A  V  +M +++V  W+  ++     
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP 68

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
               EA++LF   +M    +  N     S++ A A+L     G+ IH  + + G +S + 
Sbjct: 69  YPLQEAVQLF--YLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDIL 126

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           + +A VTMY +   +E G   F  M   ++ S N+L+S +       +  +I  +++  G
Sbjct: 127 ISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEG 186

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
             P+  +F+S+L  C+  G + EGK +   + K   I P    +  +V++  +      A
Sbjct: 187 FEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSG-INPDSHLWNSLVNVYAKCGSANYA 245

Query: 447 AKIIEDL 453
            K+  ++
Sbjct: 246 CKVFGEI 252


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/610 (38%), Positives = 383/610 (62%), Gaps = 11/610 (1%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQ-HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           +++LC  G L++AL  ++I     +   Y+ +L  C    ++ +   VH+H+    +   
Sbjct: 37  LKTLCSSGQLKEALLQMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPS 96

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
            +L T+LI +Y+  D + DAR +FD+  +R +  W A+  A +  G   E L L+  M  
Sbjct: 97  VYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLR 156

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
           + T    + FT+  +L +C  S  GF   + G++IH+  ++  Y   + + ++L+DMYA+
Sbjct: 157 SDT--EPNHFTFATILTSCYGS-LGF---ETGRQIHSIAIKRNYESHMFVGSSLLDMYAK 210

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A  VF  +  ++VV+ +A+I+ YA+ G+  EAL+LFR++ +E  +   NSVT  
Sbjct: 211 SGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMN--SNSVTYA 268

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           SVL A + LAAL  GK +H ++LR G  S + ++++L+ MY++CG +   + +FD M +R
Sbjct: 269 SVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPER 328

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKML 413
             +SWN+++  Y  HG   + +++FK M     V P  I++++VL  CSH  L + G  +
Sbjct: 329 TCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEI 388

Query: 414 FESM-RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           F +M   +  I P + HY C+VDLLGRA ++EEA   I+ +   P   +WGSLLGSCR+H
Sbjct: 389 FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVH 448

Query: 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
            +VE+     ++L ELEP NAGNYV+L+++YA+A  W++++ ++ L++ + + K PGRS 
Sbjct: 449 SDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSW 508

Query: 533 IEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVL 592
           +E+ + +++F + D  HP+ E++   +  LS + KE GYVP    VLYD+D E+KE+++L
Sbjct: 509 VELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLL 568

Query: 593 GHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652
           GHSEKLA+AFGLI T +G TIR+ KNLR+C DCHSF KF+S+   + +++RD NRFH+  
Sbjct: 569 GHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIV 628

Query: 653 NGVCSCGDYW 662
            GVCSCGDYW
Sbjct: 629 GGVCSCGDYW 638


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/620 (39%), Positives = 361/620 (58%), Gaps = 43/620 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH---------- 127
           P  HT+  L  SC    +  +A  +H+H         P + T LI++YS           
Sbjct: 125 PNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLV 184

Query: 128 FDS---------------------VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FD                      VDDAR +FD+   + +  WNA+      +GR EE L
Sbjct: 185 FDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEAL 244

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
             + RM      +  ++ T   VL AC         L+ GK I + V   G+   + ++ 
Sbjct: 245 ACFTRMQEAD--VSPNQSTMVSVLSAC----GHLRSLELGKWIGSWVRDRGFGKNLQLVN 298

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+DMY++ G +  A  +F  M  K+V+ W+ MI  Y    +  EAL LF  M+ E  ++
Sbjct: 299 ALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRE--NV 356

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILR--RGLDSI--LPVVSALVTMYARCGKLE 342
            PN VT ++VL ACA+L AL+ GK +H YI +  +G  ++  + + ++++ MYA+CG +E
Sbjct: 357 TPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVE 416

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
           + + VF  M  R + SWN++IS   ++G+  +A+ +F+EMI  G  P  I+FV VL AC+
Sbjct: 417 VAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACT 476

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
            AG VE G   F SM K++ I P ++HY CM+DLL R+ K +EA  ++ ++ +EP   +W
Sbjct: 477 QAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIW 536

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
           GSLL +CRIH  VE  E  ++RLFELEP N+G YVLL+++YA A  WD+V +++  L  +
Sbjct: 537 GSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDK 596

Query: 523 GLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
           G++KVPG + IE+   ++ F+  D+FHPQ E +  +L  +   ++E G+VP T  VLYD+
Sbjct: 597 GMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDM 656

Query: 583 DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILV 642
           D E KE  +  HSEKLA+AFGLI+T  G TIRI KNLR+C +CHS TK ISK  N+EI+ 
Sbjct: 657 DEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIA 716

Query: 643 RDVNRFHHFRNGVCSCGDYW 662
           RD NRFHHF++G CSC D W
Sbjct: 717 RDRNRFHHFKDGFCSCNDRW 736



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 154/328 (46%), Gaps = 18/328 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G   +AL   +     + +P Q T   +L +C H  SL     + S + D
Sbjct: 228 NAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRD 287

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF ++  LV  L+++YS    +  AR +FD    + + +WN +          EE L L
Sbjct: 288 RGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVL 347

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH----GYNGIVHI 224
           +  M      +  +  T+  VL AC +       L  GK +HA + ++    G    V +
Sbjct: 348 FEVM--LRENVTPNDVTFLAVLPACAS----LGALDLGKWVHAYIDKNLKGTGNVNNVSL 401

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
            T++I MYA+ GCV  A  VF  M  +++ SW+AMI+  A NG A  AL LF EMI E  
Sbjct: 402 WTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGF 461

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLEL 343
              P+ +T V VL AC     +E G      + +  G+   L     ++ + AR GK + 
Sbjct: 462 Q--PDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDE 519

Query: 344 GQCVFDHMD-KRDVVSWNSLISSYGVHG 370
            + +  +M+ + D   W SL+++  +HG
Sbjct: 520 AKVLMGNMEMEPDGAIWGSLLNACRIHG 547



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 152/340 (44%), Gaps = 46/340 (13%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGC--VMYAGFVFSQM--AVKNVVSWSAMIAC 262
           K+IH+ +++ G +  +   + LI+  A      + YA  +F  +     N+  W+ +I  
Sbjct: 42  KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           ++       +L LF +M+     L PNS T  S+ ++CA   A  + K +H + L+  L 
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSG--LYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALH 159

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE- 381
               V ++L+ MY++ G+L   + VFD    RD VS+ +LI+ Y   G+   A ++F E 
Sbjct: 160 LHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEI 219

Query: 382 ------------------------------MIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
                                         M    VSP+  + VSVL AC H   +E GK
Sbjct: 220 PAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGK 279

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
            +   +R     + +++    +VD+  +  ++  A K+ + +  +    +W +++G    
Sbjct: 280 WIGSWVRDRGFGK-NLQLVNALVDMYSKCGEIGTARKLFDGME-DKDVILWNTMIGG--- 334

Query: 472 HCNVELAERASKRLFEL---EPTNAGNYVLLADVYAAADM 508
           +C++ L E A   LFE+   E     +   LA + A A +
Sbjct: 335 YCHLSLYEEA-LVLFEVMLRENVTPNDVTFLAVLPACASL 373


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/651 (39%), Positives = 365/651 (56%), Gaps = 72/651 (11%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P       ++ +C   ++L     +H     +G   D  +++ L+++Y  FD + DAR+V
Sbjct: 72  PDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNV 131

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT-------------------- 177
           FDK  +  +   +AL       GR +E  EL+ +    G                     
Sbjct: 132 FDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSY 191

Query: 178 -------------GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
                        G++ D  + + VL A         L+  G +IH  V++ G      +
Sbjct: 192 LDAVLMFQNMHLEGLKPDGTSVSSVLPA--VGDLDMPLM--GIQIHCYVIKQGLGPDKFV 247

Query: 225 MTTLIDMYARFGCVMYAGFVFSQM-----------------------AVK---------- 251
           ++ LIDMY +  C      VF++M                       A++          
Sbjct: 248 VSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDL 307

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           NVVSW++MIA  ++NG   EALELFREM +E   + PNSVT+  +L AC  +AAL  GK 
Sbjct: 308 NVVSWTSMIASCSQNGKDMEALELFREMQIEG--VKPNSVTIPCLLPACGNIAALLHGKA 365

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
            H + LR G+ + + V SAL+ MYA+CG++   +  FD M  R++VSWNSL++ Y +HG 
Sbjct: 366 AHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGK 425

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             +AI IF+ M   G  P  +SF  VL AC+  GL EEG   F+SM + H +   +EHY+
Sbjct: 426 TFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYS 485

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           CMV LLGR+ +LEEA  +I+ +  EP   VWG+LL SCR+H  V+L E A+KR+FELEP 
Sbjct: 486 CMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPR 545

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
           N GNY+LL+++YA+  MW EV  V+ ++ +RGL+K PG S IE+K K++  ++ D  HPQ
Sbjct: 546 NPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQ 605

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
             Q+   L  L+ EMK+ GYVP T  VL D++ ++KE+I+ GHSEKLAV  GL+NT  G 
Sbjct: 606 MPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGF 665

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            +++ KNLR+C DCH+  KFIS F  +EI VRD NRFH F+ GVCSCGDYW
Sbjct: 666 PLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 78/140 (55%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           M +  + P+S  + +V++ CAAL+AL+ GK +H + L  GL     V+S+L+ MY +   
Sbjct: 65  MLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDH 124

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L+  + VFD + +  VV+ ++LIS +   G   +  ++F +    GV  + +S+  ++  
Sbjct: 125 LKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISG 184

Query: 401 CSHAGLVEEGKMLFESMRKE 420
            + +G   +  ++F++M  E
Sbjct: 185 FNRSGSYLDAVLMFQNMHLE 204



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 115/274 (41%), Gaps = 17/274 (6%)

Query: 55  LIQSLCKQGNLRQALDV---LSIEP-NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I S  + G   +AL++   + IE   P   T   LL +C +  +L      H     NG
Sbjct: 315 MIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNG 374

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              D ++ + LI++Y+    +  +R  FD    R +  WN+L     + G+  E + ++ 
Sbjct: 375 IFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFE 434

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLI 229
            M   G   + D  ++T VL AC        L + G     S+ R HG    +   + ++
Sbjct: 435 LMQRCGQ--KPDHVSFTCVLSACTQG----GLTEEGWFYFDSMSRNHGVEARMEHYSCMV 488

Query: 230 DMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-ACYARNGMAFEALELFREMIMESHDLC 287
            +  R G +  A  +  QM  + +   W A++ +C   N +    +   R   +E  +  
Sbjct: 489 TLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRN-- 546

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
           P +  ++S + A  A+    +  M+   +  RGL
Sbjct: 547 PGNYILLSNIYASKAMWV--EVDMVRDMMRSRGL 578


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/621 (38%), Positives = 378/621 (60%), Gaps = 17/621 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I  L + G+  +AL   S    +   PT+ ++   + +C+    +      H     
Sbjct: 45  NSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFV 104

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+  D F+ + LI +YS    ++DAR VFD+  +R I  W ++ R   L G   + + L
Sbjct: 105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164

Query: 169 YRRM----NGTGTGIRSDRFTYTYVLKACV-ASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           ++ +    N     +  D      V+ AC   ++ G +     + IH+ V++ G++  V 
Sbjct: 165 FKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLT-----ESIHSFVIKRGFDRGVS 219

Query: 224 IMTTLIDMYARFG--CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           +  TL+D YA+ G   V  A  +F Q+  K+ VS++++++ YA++GM+ EA ++FR +I 
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIK 279

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           E   +  N +T+ +VL A +   AL  GK IH  ++R GL+  + V ++++ MY +CG++
Sbjct: 280 EKV-VTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRV 338

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           E  +  FD M  ++V SW ++I+ YG+HG+  KA+++F  MI  GV P+ I+FVSVL AC
Sbjct: 339 ETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SHAGL + G   F +M+    + P +EHY CMVDLLGRA  L++A  +I+ +++EP   +
Sbjct: 399 SHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSII 458

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W SLL +CRIH NVELAE +  RLFEL+P+N G Y+LL+ +YA +  W +V+RV+  ++ 
Sbjct: 459 WSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKN 518

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           RGL K PG S +E+  +++ F+  DE HPQ E+++  L  L+ ++ E GYV  T  V +D
Sbjct: 519 RGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHD 578

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           +D EEKE  +  HSEKLA+AFG++NT  G T+ + KNLR+C DCH+  K ISK  ++E +
Sbjct: 579 VDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFV 638

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           VRD  RFHHF++G CSCGDYW
Sbjct: 639 VRDAKRFHHFKDGFCSCGDYW 659



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 11/166 (6%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +V SW+++IA  AR+G + EAL  F  M   S  L P   +    ++AC++L  +  GK 
Sbjct: 40  DVFSWNSVIADLARSGDSAEALRAFSSMRKLS--LYPTRSSFPCAIKACSSLLDIFSGKQ 97

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
            H      G  S + V SAL+ MY+ CGKLE  + VFD + KR++VSW S+I  Y ++G 
Sbjct: 98  THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGN 157

Query: 372 GGKAIQIFKEMIYHGVSPSPISF------VSVLGACSHA---GLVE 408
              A+ +FK+++          F      VSV+ ACS     GL E
Sbjct: 158 ALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTE 203



 Score = 39.7 bits (91), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
           ++DK DV SWNS+I+     G   +A++ F  M    + P+  SF   + ACS    +  
Sbjct: 35  YVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFS 94

Query: 410 GKMLFESMRKEHMIRPSVEHY--ACMVDLLGRANKLEEAAKIIEDL 453
           GK   ++ ++  +     + +  + ++ +     KLE+A K+ +++
Sbjct: 95  GK---QTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEI 137


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/576 (40%), Positives = 351/576 (60%), Gaps = 43/576 (7%)

Query: 118 VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177
           + KL   Y+    +D +  +F +T+  +++ W A+     L G  E+ L  Y +M     
Sbjct: 12  LDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQM--LTQ 69

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G+  + FT++ +LK C         ++ GK +H+  ++ G++  +++ T L+D+YAR G 
Sbjct: 70  GVEPNAFTFSSILKLCP--------IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGD 121

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYAR-------------------------------N 266
           V+ A  +F  M  K++VS +AM+ CYA+                               N
Sbjct: 122 VVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQN 181

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           GM  EAL LFR M+       PN VT++SVL AC  L ALE G+ +H YI   G+   + 
Sbjct: 182 GMPNEALVLFRRMLKAKAK--PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVH 239

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           V +ALV MY++CG LE  + VFD +D +DVV+WNS+I  Y + G+  +A+Q+FK M   G
Sbjct: 240 VGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMG 299

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           + P+ I+F+ +L AC H+G V EG  +F  M+ E+ I P +EHY CMV+LLGRA  +E+A
Sbjct: 300 LHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQA 359

Query: 447 AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
            ++++++ IEP P +WG+LLG+CR+H  + L E+  + L +    N+G Y+LL+++YAA 
Sbjct: 360 YELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAV 419

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
             WD V R++ +++  G++K PG S IEV  K++ F++    HP+ ++++ +L  ++  +
Sbjct: 420 GNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWL 479

Query: 567 KEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
           K  GY PQT +VL+D+   EKER +  HSEKLA+AFGLINT  G TI+I KNLR+C DCH
Sbjct: 480 KSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCH 539

Query: 627 SFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             TK ISK   ++I+VRD NRFHHF NG CSCGDYW
Sbjct: 540 EVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 45/264 (17%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G   +AL     +L  +  P + T   +L +C    +L     VHS++ +
Sbjct: 172 NVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIEN 231

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           NG   +  + T L+++YS   S++DAR VFDK   + +  WN++     + G  +E L+L
Sbjct: 232 NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQL 291

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           ++ M     G+     T+  +L AC                H+  +  G++    I   +
Sbjct: 292 FKSM--CRMGLHPTNITFIGILSACG---------------HSGWVTEGWD----IFNKM 330

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
            D Y                    +  +  M+    R G   +A EL + M +E     P
Sbjct: 331 KDEYG---------------IEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIE-----P 370

Query: 289 NSVTMVSVLQACAALAALEQGKMI 312
           + V   ++L AC     +  G+ I
Sbjct: 371 DPVLWGTLLGACRLHGKIALGEKI 394


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/638 (39%), Positives = 377/638 (59%), Gaps = 36/638 (5%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSH-LT 107
           N ++  L + G   +A+    D+++    P   T+   L +C+    LS    +H++ L 
Sbjct: 240 NTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLK 299

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR--RRTIYVWNALFRALTLAGRGEEV 165
           D+    + F+ + L+++Y+  + V  AR VFD      R + +WNA+      AG  EE 
Sbjct: 300 DSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEA 359

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE-IHASVLRHGYNGIVHI 224
           LEL+ RM     G+     T   VL AC A S  F+    GKE +H  VL+ G      +
Sbjct: 360 LELFARMEAE-AGVVPSETTIAGVLPAC-ARSETFA----GKEAVHGYVLKRGMADNPFV 413

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES- 283
              L+D+YAR G +  A ++F+ +  ++VVSW+ +I      G   +A +L REM  +  
Sbjct: 414 QNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGR 473

Query: 284 ---------------HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
                            + PN+VT++++L  CA LAA  +GK IHGY +R  LDS + V 
Sbjct: 474 FTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVG 533

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-V 387
           SALV MYA+CG L L + VFD + KR+V++WN LI +YG+HG G +AI +F  M+     
Sbjct: 534 SALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEA 593

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
            P+ ++F++ L ACSH+G+V+ G  LF SM++ H ++P+ + +AC VD+LGRA +L+EA 
Sbjct: 594 KPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAY 653

Query: 448 KIIEDLRIEPGPK---VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
            II  +  EPG +    W S LG+CR+H NV L E A++RLF+LEP  A +YVLL ++Y+
Sbjct: 654 SIITSM--EPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYS 711

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
           AA +W++   V+  +  RG+ K PG S IE+   ++ F++ +  HP+   +HA +  L  
Sbjct: 712 AAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWE 771

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
            M+ +GY P T  VL+D++  EK  I+  HSEKLA+AFGL+ T  G TIR+ KNLR+C D
Sbjct: 772 RMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCND 831

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH   KFIS+   +EI++RDV RFHHF +G CSCGDYW
Sbjct: 832 CHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 130/435 (29%), Positives = 205/435 (47%), Gaps = 43/435 (9%)

Query: 53  NELIQSLCKQGNLRQALDVLS---IEPNP-TQHTYELLLLSCTH-HNSLSDALNVHSHLT 107
           N LI +LC       ALD L    +E +P +  T   +LL+C+H    L      H+   
Sbjct: 131 NSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFAL 190

Query: 108 DNGF-DQDP-FLVTKLINVYSHFDSVDDARHVF---DKTRRRT--IYVWNALFRALTLAG 160
            NGF D D  F    L+++Y+    VDDA+ +F   D T      +  WN +   L  +G
Sbjct: 191 KNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSG 250

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG-YN 219
           R  E +E+   M     G+R D  T+   L AC        +L  G+E+HA VL+     
Sbjct: 251 RCGEAIEVIYDM--VARGVRPDGITFASALPAC----SQLEMLSLGREMHAYVLKDSDLA 304

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQM--AVKNVVSWSAMIACYARNGMAFEALELFR 277
               + + L+DMYA    V  A  VF  +    + +  W+AM+  YA+ GM  EALELF 
Sbjct: 305 ANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFA 364

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
            M  E+  + P+  T+  VL ACA        + +HGY+L+RG+     V +AL+ +YAR
Sbjct: 365 RMEAEA-GVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYAR 423

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG----------- 386
            G +E  + +F  ++ RDVVSWN+LI+   V G+   A Q+ +EM   G           
Sbjct: 424 LGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGI 483

Query: 387 -------VSPSPISFVSVLGACSHAGLVEEGKMLFE-SMRKEHMIRPSVEHYACMVDLLG 438
                  V P+ ++ +++L  C+      +GK +   +MR  H +   +   + +VD+  
Sbjct: 484 AGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMR--HALDSDIAVGSALVDMYA 541

Query: 439 RANKLEEAAKIIEDL 453
           +   L  +  + + L
Sbjct: 542 KCGCLALSRAVFDRL 556



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 140/276 (50%), Gaps = 16/276 (5%)

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLR----HGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           + L     S+     L   + IH + LR    HG+   V     L+  YAR G +  A  
Sbjct: 60  FALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAV--ANALLTAYARCGDLTAALA 117

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +F+ M  ++ V+++++IA          AL+  R+M++E H L  +S T+VSVL AC+ L
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPL--SSFTLVSVLLACSHL 175

Query: 304 AA-LEQGKMIHGYILRRG-LDSILPVV-SALVTMYARCGKLELGQCVFDHMDKRD----- 355
           A  L  G+  H + L+ G LD       +AL++MYAR G ++  Q +F  +D  D     
Sbjct: 176 AEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGG 235

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           VV+WN+++S     G  G+AI++  +M+  GV P  I+F S L ACS   ++  G+ +  
Sbjct: 236 VVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHA 295

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
            + K+  +  +    + +VD+     ++  A ++ +
Sbjct: 296 YVLKDSDLAANSFVASALVDMYASHERVGVARRVFD 331


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/592 (41%), Positives = 370/592 (62%), Gaps = 10/592 (1%)

Query: 72  LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV 131
           ++  PN + H Y  +L SC    SL     +H  L  +G   D  L TKL+++Y+    V
Sbjct: 55  IASSPN-SYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLV 113

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
             AR +FD   +R +++WN L RA    G  E  ++LYR M     G+  D FTY   LK
Sbjct: 114 GHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGM--VDYGVEPDNFTYPLALK 171

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           AC A       L+ G+E+H  VL   +   + +   L+DMYA+ GCV  A  VF ++ V+
Sbjct: 172 ACAALL----DLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVR 227

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           + V W++MIA Y +NG   EAL L R+M   ++ + P   T+VS + A A  AAL +G+ 
Sbjct: 228 DSVVWNSMIAAYGQNGRPMEALSLCRDM--AANGVGPTIATLVSTISAAADAAALPRGRE 285

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +HG+  RRG D    + ++LV MYA+ G +++ + +F+ + KR++VSWN++I  YG+HG+
Sbjct: 286 LHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGH 345

Query: 372 GGKAIQIFKEM-IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
             +A+++F +M +   V+P  I+FV VL AC+H G+V+E K  F  M   + I+P+V+H+
Sbjct: 346 FDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHF 405

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
            C+VD+LG A + EEA  +I+ + ++P   +WG+LL  C+IH NVEL E A ++L ELEP
Sbjct: 406 TCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEP 465

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
            +AGNYVLL+++YA +  W++  RV++L+  RGL+K+ G S IE+K K + F+  D  HP
Sbjct: 466 EDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHP 525

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           +  +++  L  L   M + GY+P T  V +D+  +EK  ++  HSE+LA+AFGLI+T  G
Sbjct: 526 RSAEIYEELERLEGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSG 585

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             + +TKNLR+CEDCH   K IS+   +EI++RDVNR+HHF NG CSC DYW
Sbjct: 586 TKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/629 (40%), Positives = 376/629 (59%), Gaps = 16/629 (2%)

Query: 41  STTPTSLSSRN----KNELIQSLCKQGNLRQALDVLSIEPN---PTQHTYELLLLSCTHH 93
           ST   S SSR+     N L+ +  + G+   AL V    P+   P   T+ L L +C   
Sbjct: 65  STLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALPSSARPDSTTFTLALTACARL 124

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
             L  A  V       G+ +D F+ + L++VYS   ++ DA  VFD   R+    W+ + 
Sbjct: 125 GDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMV 184

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                AGR  E L +Y RM   G  +  D      V++AC  +       + G  +H   
Sbjct: 185 AGFVSAGRPVEALGMYSRMREHG--VAEDEVVMVGVIQACTLTGN----TRMGASVHGRF 238

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           LRHG    V I T+L+DMYA+ G    A  VF  M  +N VSW+A+I+ +A+NG A EAL
Sbjct: 239 LRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEAL 298

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
           +LFREM   +  L P+S  +VS L ACA +  L+ GK IHG+ILRR L+    + +A++ 
Sbjct: 299 DLFREM--STSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRR-LEFQCILGTAVLD 355

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MY++CG LE  + +F+ +  RD+V WN++I+  G HG G  A+ +F+E+   G+ P   +
Sbjct: 356 MYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHAT 415

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           F S+L A SH+GLVEEGK  F+ M  E  I P+ +H  C+VDLL R+  +EEA +++  +
Sbjct: 416 FASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASM 475

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
             EP   +W +LL  C  +  +EL E  +K++ E +P + G   L++++YAAA  WD+V+
Sbjct: 476 HTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVR 535

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
            +++L++  G +KVPG S IEV    ++FV  D+ HPQ +++  ++  LS EM++ GYVP
Sbjct: 536 EIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVP 595

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
           +T+ V +DLD + KE+++  HSE+LA+AFGL+NTS G  + I KNLR+C DCH   K+IS
Sbjct: 596 RTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYIS 655

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K  ++EI+VRD  RFHHF++G CSCGDYW
Sbjct: 656 KIVDREIVVRDAKRFHHFKDGACSCGDYW 684


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/638 (37%), Positives = 369/638 (57%), Gaps = 66/638 (10%)

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
           SC    +L     +H+    +GF  D  + + L ++Y   D + DAR +FD+   R + V
Sbjct: 113 SCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVV 172

Query: 149 WNALFRALTLAGRGEEVLELYRRM------------NGTGTGIRSDRFTYTYV------- 189
           W+A+    +  G  EE  EL+  M            NG   G  ++ F    V       
Sbjct: 173 WSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMML 232

Query: 190 ---------LKACVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
                      +CV  + G    +  G ++H  V++ G      +++ ++DMY + GCV 
Sbjct: 233 VQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVK 292

Query: 240 YAGFVFS-----------------------------------QMAVKNVVSWSAMIACYA 264
               VF                                    Q    NVV+W+++IA  +
Sbjct: 293 EMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCS 352

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           +NG   EALELFR+M  +++ + PN+VT+ S++ AC  ++AL  GK IH + LRRG+   
Sbjct: 353 QNGKDLEALELFRDM--QAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDD 410

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + V SAL+ MYA+CG+++L +  FD M   ++VSWN+++  Y +HG   + +++F  M+ 
Sbjct: 411 VYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQ 470

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            G  P  ++F  VL AC+  GL EEG   + SM +EH I P +EHYAC+V LL R  KLE
Sbjct: 471 SGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLE 530

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
           EA  II+++  EP   VWG+LL SCR+H N+ L E A+++LF LEPTN GNY+LL+++YA
Sbjct: 531 EAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYA 590

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
           +  +WDE  R++ +++++GL+K PG S IEV  K++  ++ D+ HPQ + +   L  L+ 
Sbjct: 591 SKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNM 650

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           +MK+ GY+P+T  VL D++ ++KE+I+ GHSEKLAV  GL+NTS G+ +++ KNLR+C+D
Sbjct: 651 QMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDD 710

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH+  K IS+   +EI VRD NRFHHF++GVCSCGD+W
Sbjct: 711 CHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 172/391 (43%), Gaps = 43/391 (10%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNA 151
           SLS A   H+ +       D  L T L++ Y++  S+   +     +      T++ +++
Sbjct: 15  SLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSS 74

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           L  A   +     VL  +  ++     +  D F     +K+C +       L  G+++HA
Sbjct: 75  LIHAFARSHHFPHVLTTFSHLHPLR--LIPDAFLLPSAIKSCAS----LRALDPGQQLHA 128

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
                G+     + ++L  MY +   ++ A  +F +M  ++VV WSAMIA Y+R G+  E
Sbjct: 129 FAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEE 188

Query: 272 ALELFREM---------------------------------IMESHDLCPNSVTMVSVLQ 298
           A ELF EM                                 +M      P+  T+  VL 
Sbjct: 189 AKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLP 248

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           A   L  +  G  +HGY++++GL S   VVSA++ MY +CG ++    VFD +++ ++ S
Sbjct: 249 AVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGS 308

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
            N+ ++    +G    A+++F +     +  + +++ S++ +CS  G   E   LF  M+
Sbjct: 309 LNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQ 368

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
             + + P+      ++   G  + L    +I
Sbjct: 369 A-YGVEPNAVTIPSLIPACGNISALMHGKEI 398



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 7/233 (3%)

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR---FGCVMYAGFV 244
           + L  C++SS   + L   ++ HA +LR        + T+L+  YA          +  +
Sbjct: 3   HALSQCLSSST--ASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTL 60

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
            S +    + S+S++I  +AR+      L  F  +      L P++  + S +++CA+L 
Sbjct: 61  SSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHL--HPLRLIPDAFLLPSAIKSCASLR 118

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           AL+ G+ +H +    G  +   V S+L  MY +C ++   + +FD M  RDVV W+++I+
Sbjct: 119 ALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIA 178

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
            Y   G   +A ++F EM   GV P+ +S+  +L    + G  +E   +F  M
Sbjct: 179 GYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMM 231



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 114/258 (44%), Gaps = 19/258 (7%)

Query: 55  LIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           +I S  + G   +AL++        +EPN    T   L+ +C + ++L     +H     
Sbjct: 347 IIASCSQNGKDLEALELFRDMQAYGVEPNAV--TIPSLIPACGNISALMHGKEIHCFSLR 404

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   D ++ + LI++Y+    +  AR  FDK     +  WNA+ +   + G+ +E +E+
Sbjct: 405 RGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEM 464

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL-RHGYNGIVHIMTT 227
           +  M    +G + D  T+T VL AC  +     L + G   + S+   HG    +     
Sbjct: 465 FHMM--LQSGQKPDLVTFTCVLSACAQN----GLTEEGWRCYNSMSEEHGIEPKMEHYAC 518

Query: 228 LIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-ACYARNGMAFEALELFREMIMESHD 285
           L+ + +R G +  A  +  +M  + +   W A++ +C   N ++   +   +   +E  +
Sbjct: 519 LVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTN 578

Query: 286 LCPNSVTMVSVLQACAAL 303
             P +  ++S + A   L
Sbjct: 579 --PGNYILLSNIYASKGL 594


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/615 (38%), Positives = 379/615 (61%), Gaps = 14/615 (2%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++    + G   +AL    D+ + +  P Q +   ++++      L +   +H++   
Sbjct: 230 NSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIK 289

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           NGFD +  +   LI++Y+    +      FD    + +  W              + LEL
Sbjct: 290 NGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALEL 349

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            R++   G  +  D      +L AC   +C    L   KEIH   +R G +  V +  T+
Sbjct: 350 LRQLQMEGMDV--DATMIGSILLACRGLNC----LGKIKEIHGYTIRGGLSDPV-LQNTI 402

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           ID+Y   G + YA  +F  +  K+VVSW++MI+CY  NG+A +ALE+F  M  +   L P
Sbjct: 403 IDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSM--KETGLEP 460

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + VT+VS+L A  +L+ L++GK IHG+I+R+G      + + LV MYARCG +E    +F
Sbjct: 461 DYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIF 520

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
                R+++ W ++IS+YG+HGYG  A+++F  M    + P  I+F+++L ACSH+GLV 
Sbjct: 521 TCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVN 580

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EGK   E M+ E+ + P  EHY C+VDLLGR N LEEA +I++ ++ EP P+VW +LLG+
Sbjct: 581 EGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGA 640

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH N E+ E A+++L EL+  N GNYVL+++V+AA   W +V+ V+  ++  GL K P
Sbjct: 641 CRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNP 700

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK-EKGYVPQTKVVLYDLDAEEK 587
           G S IEV  K+++F+S D+ HP+ ++++  L  ++ ++K E GYV QTK VL+++  EEK
Sbjct: 701 GCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEK 760

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
            +++ GHSE+LA+A+GL+ T++G  IR+TKNLR+C DCHSF   +S+F  +E++VRD +R
Sbjct: 761 VQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASR 820

Query: 648 FHHFRNGVCSCGDYW 662
           FHHF++G+CSCGD+W
Sbjct: 821 FHHFKDGMCSCGDFW 835



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 223/442 (50%), Gaps = 20/442 (4%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           +T+ +LL +C     L     +H      G D   F+V  L+ +Y+  + ++ AR +FD+
Sbjct: 59  YTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDR 118

Query: 141 TR-RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
              R  +  WN++  A +  G   E L L+  M     G+ ++ +T+   L+AC  S   
Sbjct: 119 MYVRNDVVSWNSIISAYSGNGMCTEALCLFSEM--LKAGVVTNTYTFAAALQACEDS--- 173

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
            S +K G +IHA++L+ G    V++   L+ MY RFG +  A  +F  +  K++V+W++M
Sbjct: 174 -SFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSM 232

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           +  + +NG+  EALE F +  +++ DL P+ V+++S++ A   L  L  GK IH Y ++ 
Sbjct: 233 LTGFIQNGLYSEALEFFYD--LQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKN 290

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           G DS + V + L+ MYA+C  +  G   FD M  +D++SW +  + Y  +    +A+++ 
Sbjct: 291 GFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELL 350

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           +++   G+        S+L AC     + + K +     +  +  P +++   ++D+ G 
Sbjct: 351 RQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGE 408

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH---CNVELAERASKRLFELEPTNAGNY 496
              ++ A +I E +  +     W S++ SC +H    N  L   +S +   LEP    +Y
Sbjct: 409 CGIIDYAVRIFESIECKDVVS-WTSMI-SCYVHNGLANKALEVFSSMKETGLEP----DY 462

Query: 497 VLLADVYAAADMWDEVKRVKRL 518
           V L  + +A      +K+ K +
Sbjct: 463 VTLVSILSAVCSLSTLKKGKEI 484



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 157/289 (54%), Gaps = 9/289 (3%)

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +Y    SV DA  +FDK   R+I+ WNA+       G     LE+YR M   G  +  D 
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLG--VSFDS 58

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           +T+  +LKAC      F     G EIH   +++G +  V ++ +L+ +YA+   +  A  
Sbjct: 59  YTFPVLLKACGIVEDLFC----GAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARK 114

Query: 244 VFSQMAVKN-VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA 302
           +F +M V+N VVSW+++I+ Y+ NGM  EAL LF EM+     +  N+ T  + LQAC  
Sbjct: 115 LFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAG--VVTNTYTFAAALQACED 172

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
            + ++ G  IH  IL+ G    + V +ALV MY R GK+     +F +++ +D+V+WNS+
Sbjct: 173 SSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSM 232

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           ++ +  +G   +A++ F ++    + P  +S +S++ A    G +  GK
Sbjct: 233 LTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGK 281



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 131/239 (54%), Gaps = 9/239 (3%)

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MY + G V+ A  +F +M+ +++ +W+AM+  Y  NG A  ALE++REM      +  +S
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREM--RHLGVSFDS 58

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T   +L+AC  +  L  G  IHG  ++ G DS + VV++LV +YA+C  +   + +FD 
Sbjct: 59  YTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDR 118

Query: 351 MDKR-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
           M  R DVVSWNS+IS+Y  +G   +A+ +F EM+  GV  +  +F + L AC  +  ++ 
Sbjct: 119 MYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKL 178

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV--WGSLL 466
           G  +  ++ K   +       A +V +  R  K+ EAA I  +L    G  +  W S+L
Sbjct: 179 GMQIHAAILKSGRVLDVYVANA-LVAMYVRFGKMPEAAVIFGNLE---GKDIVTWNSML 233


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/582 (38%), Positives = 367/582 (63%), Gaps = 9/582 (1%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           H YE  + +C    +L +   VH+ +    +    FL T+L+ +Y    ++DDAR+V D+
Sbjct: 43  HEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR 102

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
              R++  W  +    +   R  E L+L+ +M      +R+      Y L   + S  G 
Sbjct: 103 MPERSVVSWTTMISGYSQTERHVEALDLFIKM------LRAGCIPNEYTLATVLTSCSGP 156

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             +  GK++H+ +++  +   + + ++L+DMYA+   +  A  VF  +  ++VVS +A+I
Sbjct: 157 QSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAII 216

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           + YA+ G+  EAL+LFR++  E      N VT  +++ A + LA+L+ GK +H  ILR+ 
Sbjct: 217 SGYAQKGLDEEALDLFRQLYSEGMQC--NHVTFTTLVTALSGLASLDYGKQVHALILRKE 274

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           L   + + ++L+ MY++CGKL   + VFD+M +R VVSWN+++  YG HG G + I +FK
Sbjct: 275 LPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK 334

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           ++ +  V P  ++ ++VL  CSH GLV+EG  +F+++ KE        HY C++DLLGR+
Sbjct: 335 DL-HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRS 393

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            +LE+A  +IE++  E  P +WGSLLG+CR+H NV + E  +++L E+EP NAGNYV+L+
Sbjct: 394 GRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILS 453

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YAAA MW +V +V++L+  + + K PG+S I + + +++F S + FHP  + ++A + 
Sbjct: 454 NIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIK 513

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            +  ++K  G+VP    VL+D+D E+KER++LGHSEKLA+ FGL+NT  G TIR+ KNLR
Sbjct: 514 EIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLR 573

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH+F KF+SK   +EI +RD NRFH   +G C+CGDYW
Sbjct: 574 ICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 157/306 (51%), Gaps = 33/306 (10%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P ++T   +L SC+   S+     VHS L    F+   F+ + L+++Y+  +++ +AR V
Sbjct: 141 PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRV 200

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    R +    A+       G  EE L+L+R++     G++ +  T+T ++ A     
Sbjct: 201 FDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQL--YSEGMQCNHVTFTTLVTAL---- 254

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G + L +GK++HA +LR      V +  +LIDMY++ G ++Y+  VF  M  ++VVSW+
Sbjct: 255 SGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWN 314

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AM+  Y R+G+  E + LF+++  E   + P+SVT+++VL  C+           HG ++
Sbjct: 315 AMLMGYGRHGLGHEVISLFKDLHKE---VKPDSVTLLAVLSGCS-----------HGGLV 360

Query: 318 RRGLDSILPVV---SAL---------VTMYARCGKLELGQCVFDHMDKRDVVS-WNSLIS 364
             GLD    VV   SAL         + +  R G+LE    + ++M      S W SL+ 
Sbjct: 361 DEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLG 420

Query: 365 SYGVHG 370
           +  VH 
Sbjct: 421 ACRVHA 426


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/651 (37%), Positives = 385/651 (59%), Gaps = 14/651 (2%)

Query: 16  PYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIE 75
           P+  N++  +  K   +   +S+        + S N   +I       +  QAL++L   
Sbjct: 293 PFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNA--VIAGCVLHEHHEQALELLGQM 350

Query: 76  PN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV 131
                 P   T    L +C           +HS L     + D F+   L+++YS  D +
Sbjct: 351 KRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLL 410

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
           +DAR  F+    + +  WNA+    +      E L L+  M+  G G   ++ T + +LK
Sbjct: 411 EDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGF--NQTTLSTILK 468

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
               S+ G  ++   +++H   ++ G++  ++++ +LID Y +   V  A  +F +  + 
Sbjct: 469 ----STAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIG 524

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           ++VS+++MI  YA+ G   EAL+LF EM  +  +L P+     S+L ACA L+A EQGK 
Sbjct: 525 DLVSFTSMITAYAQYGQGEEALKLFLEM--QDMELKPDRFVCSSLLNACANLSAFEQGKQ 582

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +H +IL+ G    +   ++LV MYA+CG ++     F  + +R +VSW+++I     HG+
Sbjct: 583 LHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGH 642

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
           G +A+Q+F +M+  GVSP+ I+ VSVLGAC+HAGLV E K+ FESM +    +P  EHYA
Sbjct: 643 GRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYA 702

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           CM+DLLGRA K+ EA +++  +  E    VWG+LLG+ RIH +VEL  RA++ LF LEP 
Sbjct: 703 CMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPE 762

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
            +G +VLLA++YA+A  W+ V  V+RL+    ++K PG S IEVK K+Y+F+  D  H +
Sbjct: 763 KSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYR 822

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
            ++++A L  LS  M + GYVP  ++ L+D++  EKE ++  HSEKLAVAFGLI T +G 
Sbjct: 823 SQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGA 882

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            IR+ KNLR+C DCH+  K+I K  ++EI+VRD+NRFHHF++G CSCGDYW
Sbjct: 883 PIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/454 (29%), Positives = 225/454 (49%), Gaps = 30/454 (6%)

Query: 13  LRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVL 72
            + P H     HLP KP+           T P   S   +   I +L  +GN        
Sbjct: 9   FQKPLHQR--LHLPFKPAPKLI------QTVP-QFSQDPQTTAILNLIDKGNF------- 52

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
                PT  +Y  LL  C    SL   L +H+H+T +G   DP +   LIN+YS   +  
Sbjct: 53  ----TPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFG 108

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
            AR + D++    +  W+AL       G G   L  +  M+  G  ++ + FT++ VLKA
Sbjct: 109 YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG--VKCNEFTFSSVLKA 166

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
           C         L+ GK++H  V+  G+ G V +  TL+ MYA+    + +  +F ++  +N
Sbjct: 167 CSI----VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERN 222

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           VVSW+A+ +CY +     EA+ LF EM++    + PN  ++ S++ AC  L    +GK+I
Sbjct: 223 VVSWNALFSCYVQIDFCGEAVGLFYEMVLSG--IKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           HGY+++ G D      +ALV MYA+ G L     VF+ + + D+VSWN++I+   +H + 
Sbjct: 281 HGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHH 340

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +A+++  +M   G+ P+  +  S L AC+  GL E G+ L  S+ K  M    +     
Sbjct: 341 EQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDM-ESDLFVSVG 399

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           +VD+  + + LE+ A++  +L  E     W +++
Sbjct: 400 LVDMYSKCDLLED-ARMAFNLLPEKDLIAWNAII 432


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/616 (39%), Positives = 371/616 (60%), Gaps = 14/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I   C+ GN+ +AL VL    + E      T   +L  C   N +   + VH ++  
Sbjct: 217 NAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIK 276

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +G + D F+   LIN+YS F  + DA+ VFD    R +  WN++  A          L  
Sbjct: 277 HGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGF 336

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCG-FSLLKHGKEIHASVLRHGYNGI-VHIMT 226
           ++ M     G+R D  T        +AS  G  S  + G+ +H  V+R  +  + + I  
Sbjct: 337 FKEM--LFVGMRPDLLTVV-----SLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGN 389

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L++MYA+ G +  A  VF Q+  ++V+SW+ +I  YA+NG+A EA++ +  M+ E   +
Sbjct: 390 ALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAY-NMMEEGRTI 448

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            PN  T VS+L A + + AL+QG  IHG +++  L   + V + L+ MY +CG+LE    
Sbjct: 449 VPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMS 508

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +F  + +   V WN++ISS G+HG+G KA+Q+FK+M   GV    I+FVS+L ACSH+GL
Sbjct: 509 LFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGL 568

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V+E +  F++M+KE+ I+P+++HY CMVDL GRA  LE+A  ++ ++ I+    +WG+LL
Sbjct: 569 VDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLL 628

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +CRIH N EL   AS RL E++  N G YVLL+++YA    W+   +V+ L   RGL+K
Sbjct: 629 AACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRK 688

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S + V   +  F + ++ HPQ  +++  L  L+A+MK  GYVP    VL D++ +E
Sbjct: 689 TPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDE 748

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE I+  HSE+LA+ FG+I+T     IRI KNLR+C DCH+ TK+ISK   +EI+VRD N
Sbjct: 749 KEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSN 808

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF++G+CSCGDYW
Sbjct: 809 RFHHFKDGICSCGDYW 824



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 182/315 (57%), Gaps = 13/315 (4%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           + L+  SCT+ N    A  +H+ L   G  QD  L+T+L+ +Y+    +  +   F   +
Sbjct: 54  FNLVFRSCTNINV---AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           R+ I+ WN++  A    GR  + ++    +    +G+R D +T+  VLKAC++       
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSL-SGVRPDFYTFPPVLKACLS------- 162

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L  G+++H  VL+ G+   V++  +LI +Y+RFG V  A  VF  M V++V SW+AMI+ 
Sbjct: 163 LADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISG 222

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           + +NG   EAL +   M  E   +  ++VT+ S+L  CA    +  G ++H Y+++ GL+
Sbjct: 223 FCQNGNVAEALRVLDRMKTEEVKM--DTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLE 280

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
           S + V +AL+ MY++ G+L+  Q VFD M+ RD+VSWNS+I++Y  +     A+  FKEM
Sbjct: 281 SDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEM 340

Query: 383 IYHGVSPSPISFVSV 397
           ++ G+ P  ++ VS+
Sbjct: 341 LFVGMRPDLLTVVSL 355



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 139/263 (52%), Gaps = 6/263 (2%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
            K++HA +L  G    V ++T L+ +YA  G +  +   F  +  KN+ SW++M++ Y R
Sbjct: 67  AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVR 126

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G   ++++   E++  S  + P+  T   VL+AC +LA    G+ +H ++L+ G +  +
Sbjct: 127 RGRYRDSMDCVTELLSLS-GVRPDFYTFPPVLKACLSLA---DGEKMHCWVLKMGFEHDV 182

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V ++L+ +Y+R G +E+   VF  M  RDV SWN++IS +  +G   +A+++   M   
Sbjct: 183 YVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTE 242

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
            V    ++  S+L  C+ +  V  G ++   + K H +   V     ++++  +  +L++
Sbjct: 243 EVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIK-HGLESDVFVSNALINMYSKFGRLQD 301

Query: 446 AAKIIEDLRIEPGPKVWGSLLGS 468
           A ++ + + +      W S++ +
Sbjct: 302 AQRVFDGMEVRDLVS-WNSIIAA 323


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/615 (39%), Positives = 364/615 (59%), Gaps = 47/615 (7%)

Query: 53  NELIQSLCKQGNLRQALD-----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N +I +    G+  +A+      +L  E  P  +T+  +L +C    +L D   +H    
Sbjct: 86  NSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAF 142

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
             GF  + F+   LI++YS F     AR +FD    R +  WNA+   L   G   + L+
Sbjct: 143 KLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 202

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           +   M   G                                     ++  +  +V I+  
Sbjct: 203 VLDEMRLEG-------------------------------------IKMNFVTVVSILPV 225

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
            +DMYA+ G +  A  VF  + VK+V+SW+ +I  YA+NG+A EA+E+++ M+ E  ++ 
Sbjct: 226 FVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYK-MMEECKEII 284

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           PN  T VS+L A A + AL+QG  IHG +++  L   + V + L+ +Y +CG+L     +
Sbjct: 285 PNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSL 344

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F  + +   V+WN++IS +G+HG+  K +++F EM+  GV P  ++FVS+L ACSH+G V
Sbjct: 345 FYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFV 404

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           EEGK  F  M +E+ I+PS++HY CMVDLLGRA  LE A   I+D+ ++P   +WG+LLG
Sbjct: 405 EEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLG 463

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           +CRIH N+EL + AS RLFE++  N G YVLL+++YA    W+ V +V+ L   RGL+K 
Sbjct: 464 ACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKT 523

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           PG S IEV RK+  F + ++ HP+ ++++  L  L+A+MK  GY+P    VL D++ +EK
Sbjct: 524 PGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEK 583

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
           E I+  HSE+LA+AFG+I+T     IRI KNLR+C DCH+ TKFIS+   +EI+VRD NR
Sbjct: 584 EHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNR 643

Query: 648 FHHFRNGVCSCGDYW 662
           FHHF++G+CSCGDYW
Sbjct: 644 FHHFKDGICSCGDYW 658



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 209/427 (48%), Gaps = 47/427 (11%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +H+ L   G  Q  F+ T+L+N+Y++   V  +R  FD+  ++ +Y WN++  A    G 
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
             E +  + ++    + IR D +T+  VLKAC         L  G++IH    + G+   
Sbjct: 98  FHEAIGCFYQLLLV-SEIRPDFYTFPPVLKAC-------GTLVDGRKIHCWAFKLGFQWN 149

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V +  +LI MY+RFG    A  +F  M  +++ SW+AMI+   +NG A +AL++  EM +
Sbjct: 150 VFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 209

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           E   +  N VT+V                            SILPV    V MYA+ G L
Sbjct: 210 EGIKM--NFVTVV----------------------------SILPV---FVDMYAKLGLL 236

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY-HGVSPSPISFVSVLGA 400
           +    VF+ +  +DV+SWN+LI+ Y  +G   +AI+++K M     + P+  ++VS+L A
Sbjct: 237 DSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPA 296

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
            +H G +++G  +   + K ++    V    C++D+ G+  +L +A  +   +  E    
Sbjct: 297 YAHVGALQQGMKIHGRVIKTNL-HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSV- 354

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFE--LEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
            W +++    IH + E   +    + +  ++P +   +V L    + +   +E K   RL
Sbjct: 355 TWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHV-TFVSLLSACSHSGFVEEGKWCFRL 413

Query: 519 LEARGLQ 525
           ++  G++
Sbjct: 414 MQEYGIK 420



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 195/413 (47%), Gaps = 39/413 (9%)

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           ++ +  G G +++   + ++  +   +          K +HA ++  G    + I T L+
Sbjct: 6   KKFSSYGLGNQNEEIDFNFLFDSSTKTP-------FAKCLHALLVVAGKVQSIFISTRLV 58

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
           ++YA  G V  +   F Q+  K+V +W++MI+ Y  NG   EA+  F ++++ S ++ P+
Sbjct: 59  NLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVS-EIRPD 117

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
             T   VL+AC  L     G+ IH +  + G    + V ++L+ MY+R G   + + +FD
Sbjct: 118 FYTFPPVLKACGTLV---DGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFD 174

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC----SHAG 405
            M  RD+ SWN++IS    +G   +A+ +  EM   G+  + ++ VS+L       +  G
Sbjct: 175 DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLG 234

Query: 406 LVEEGKMLFESMRKEHMIRPS--VEHYACMVDLLGRANKLEEAAKIIEDLR-IEPGPKVW 462
           L++    +FE +  + +I  +  +  YA      G A++  E  K++E+ + I P    W
Sbjct: 235 LLDSAHKVFEIIPVKDVISWNTLITGYAQN----GLASEAIEVYKMMEECKEIIPNQGTW 290

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
            S+L +   + +V   ++  K    +  TN     L  DV+ A  + D   +  RL++A 
Sbjct: 291 VSILPA---YAHVGALQQGMKIHGRVIKTN-----LHLDVFVATCLIDVYGKCGRLVDAM 342

Query: 523 GL-QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQ 574
            L  +VP  S +       + +S    H   E+     + L  EM ++G  P 
Sbjct: 343 SLFYQVPQESSVTWN----AIISCHGIHGHAEK----TLKLFGEMLDEGVKPD 387


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 362/602 (60%), Gaps = 10/602 (1%)

Query: 62  QGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKL 121
           + ++R  +D+L +  +    T   +L +          + +    +  G   D +++T L
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 122 INVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
           I++YS        R +FD+  +  +  +NA+    T     E  + L+R +  +G  + S
Sbjct: 256 ISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS 315

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
                   L   +     F+ L+  + I    L+ G      + T L  +Y R   V +A
Sbjct: 316 S------TLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
             +F +   K++ SW+AMI+ Y +NG+   A+ LF+EM+ +   L PN VT+ S+L ACA
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ---LSPNPVTVTSILSACA 426

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            L AL  GK +HG I    L+S + V +ALV MYA+CG +   + +FD M  ++VV+WN+
Sbjct: 427 QLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNA 486

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +I+ YG+HG+G +A+++F EM+  G+ P+ ++F+S+L ACSH+GLV EG  +F SM   +
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNY 546

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
             +P  EHYACMVD+LGRA +L  A + IE + +EPGP VWG+LLG+C IH N E+A  A
Sbjct: 547 GFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVA 606

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS 541
           SKRLF+L+P N G YVLL+++Y+    + +   V+++++ R L K PG + IE+  + Y 
Sbjct: 607 SKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYV 666

Query: 542 FVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT-KVVLYDLDAEEKERIVLGHSEKLAV 600
           F S D  HPQ   +  +L  L+ +M+E GY  +T    L+D++ EEKE +V  HSEKLA+
Sbjct: 667 FTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAI 726

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           AFGLI+T  G  IRI KNLR+C DCH+ TKFISK   + I+VRD NRFHHF+NG+CSCGD
Sbjct: 727 AFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGD 786

Query: 661 YW 662
           YW
Sbjct: 787 YW 788



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 198/411 (48%), Gaps = 14/411 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   TY   + + +        + +H+H   +G   + F+ + ++++Y  F   + AR V
Sbjct: 111 PDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKV 170

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    R   +WN +    +     E+ + ++  M     G+  D  T   VL A VA  
Sbjct: 171 FDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDM--LDVGLSFDSTTLATVLTA-VAEL 227

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
             + L   G  I     + G +  V+++T LI +Y++ G       +F Q+   +++S++
Sbjct: 228 QEYRL---GMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYN 284

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI+ Y  N     A+ LFRE++     +  NS T+V ++        L+  ++I    L
Sbjct: 285 AMISGYTFNHETESAVTLFRELLASGQRV--NSSTLVGLIPVYLPFNHLQLSRLIQNLSL 342

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G+     V +AL T+Y R  +++  + +FD   ++ + SWN++IS Y  +G   +AI 
Sbjct: 343 KIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAIS 402

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F+EM+   +SP+P++  S+L AC+  G +  GK +   ++ E +   +V     +VD+ 
Sbjct: 403 LFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERL-ESNVYVSTALVDMY 460

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
            +   + EA ++  DL ++     W +++    +H +    + A K  +E+
Sbjct: 461 AKCGSIVEARQLF-DLMVDKNVVTWNAMITGYGLHGH---GKEALKLFYEM 507



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 202/415 (48%), Gaps = 18/415 (4%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
            +LS  L + + L  +G   D   +TKL + +    +V   R +F+K  +  ++++N L 
Sbjct: 25  TTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLI 84

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           R  +  G  +  + LY  +    T +R D FTY + + A    +      + G  +HA  
Sbjct: 85  RGFSDNGLPKSSIFLYTHLRKX-TNLRPDNFTYAFAISA----ASRLEDERVGVLLHAHS 139

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           +  G    + + + ++D+Y +F     A  VF  M  ++ V W+ MI+ ++RN    +++
Sbjct: 140 IVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSI 199

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
            +F +M+     L  +S T+ +VL A A L     G  I     ++GL S + V++ L++
Sbjct: 200 RVFVDML--DVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLIS 257

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV---SPS 390
           +Y++CGK   G+ +FD +D+ D++S+N++IS Y  +     A+ +F+E++  G    S +
Sbjct: 258 LYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSST 317

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
            +  + V    +H  L    + L  S++   +++PSV     +  +  R N+++ A ++ 
Sbjct: 318 LVGLIPVYLPFNHLQLSRLIQNL--SLKIGIILQPSVS--TALTTVYCRLNEVQFARQLF 373

Query: 451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           ++   E     W +++     +    L +RA     E+ P  + N V +  + +A
Sbjct: 374 DE-SPEKSLASWNAMISG---YTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSA 424



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 117/230 (50%), Gaps = 9/230 (3%)

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
           N   + IR  RF  T +  A   S     LL    +I A ++ HG +  +  +T L   +
Sbjct: 5   NTATSAIRGQRFFLTLLNNATTLSQ----LL----QIQAQLILHGIHYDLSSITKLTHKF 56

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
              G V +   +F++++  ++  ++ +I  ++ NG+   ++ L+  +  +  +L P++ T
Sbjct: 57  FDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHL-RKXTNLRPDNFT 115

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
               + A + L     G ++H + +  G+ S L V SA+V +Y +  + EL + VFD M 
Sbjct: 116 YAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMP 175

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
           +RD V WN++IS +  + Y   +I++F +M+  G+S    +  +VL A +
Sbjct: 176 ERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/582 (38%), Positives = 368/582 (63%), Gaps = 9/582 (1%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           H YE  + +C    +L +   VH+ +    +    FL T+L+ +Y    ++DDAR+V D+
Sbjct: 11  HEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR 70

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
              R++  W  +    +   R  E L+L+ +M      +R+      Y L   + S  G 
Sbjct: 71  MPERSVVSWTTMISGYSQTERHVEALDLFIKM------LRAGCIPNEYTLATVLTSCSGP 124

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             +  GK++H+ +++  +   + + ++L+DMYA+   +  A  VF  +  ++VVS +A+I
Sbjct: 125 QSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAII 184

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           + YA+ G+  EAL+LFR++  E   +  N VT  +++ A + LA+L+ GK +H  ILR+ 
Sbjct: 185 SGYAQKGLDEEALDLFRQLYSEG--MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKE 242

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           L   + + ++L+ MY++CGKL   + VFD+M +R VVSWN+++  YG HG G + I +FK
Sbjct: 243 LPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK 302

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           ++ +  V P  ++ ++VL  CSH GLV+EG  +F+++ KE        HY C++DLLGR+
Sbjct: 303 DL-HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRS 361

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            +LE+A  +IE++  E  P +WGSLLG+CR+H NV + E  +++L E+EP NAGNYV+L+
Sbjct: 362 GRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILS 421

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YAAA MW +V +V++L+  + + K PG+S I + + +++F S + FHP  + ++A + 
Sbjct: 422 NIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIK 481

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            +  ++K  G+VP    VL+D+D E+KER++LGHSEKLA+ FGL+NT  G TIR+ KNLR
Sbjct: 482 EIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLR 541

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH+F KF+SK   +EI +RD NRFH   +G C+CGDYW
Sbjct: 542 ICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 157/306 (51%), Gaps = 33/306 (10%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P ++T   +L SC+   S+     VHS L    F+   F+ + L+++Y+  +++ +AR V
Sbjct: 109 PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRV 168

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    R +    A+       G  EE L+L+R++     G++ +  T+T ++ A     
Sbjct: 169 FDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQL--YSEGMQCNHVTFTTLVTAL---- 222

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G + L +GK++HA +LR      V +  +LIDMY++ G ++Y+  VF  M  ++VVSW+
Sbjct: 223 SGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWN 282

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AM+  Y R+G+  E + LF+++  E   + P+SVT+++VL  C+           HG ++
Sbjct: 283 AMLMGYGRHGLGHEVISLFKDLHKE---VKPDSVTLLAVLSGCS-----------HGGLV 328

Query: 318 RRGLDSILPVV---SAL---------VTMYARCGKLELGQCVFDHMDKRDVVS-WNSLIS 364
             GLD    VV   SAL         + +  R G+LE    + ++M      S W SL+ 
Sbjct: 329 DEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLG 388

Query: 365 SYGVHG 370
           +  VH 
Sbjct: 389 ACRVHA 394


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 362/602 (60%), Gaps = 10/602 (1%)

Query: 62  QGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKL 121
           + ++R  +D+L +  +    T   +L +          + +    +  G   D +++T L
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 122 INVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
           I++YS        R +FD+  +  +  +NA+    T     E  + L+R +  +G  + S
Sbjct: 256 ISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS 315

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
                   L   +     F+ L+  + I    L+ G      + T L  +Y R   V +A
Sbjct: 316 S------TLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
             +F +   K++ SW+AMI+ Y +NG+   A+ LF+EM+ +   L PN VT+ S+L ACA
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ---LSPNPVTVTSILSACA 426

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            L AL  GK +HG I    L+S + V +ALV MYA+CG +   + +FD M  ++VV+WN+
Sbjct: 427 QLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNA 486

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +I+ YG+HG+G +A+++F EM+  G+ P+ ++F+S+L ACSH+GLV EG  +F SM   +
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNY 546

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
             +P  EHYACMVD+LGRA +L  A + IE + +EPGP VWG+LLG+C IH N E+A  A
Sbjct: 547 GFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVA 606

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS 541
           SKRLF+L+P N G YVLL+++Y+    + +   V+++++ R L K PG + IE+  + Y 
Sbjct: 607 SKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYV 666

Query: 542 FVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT-KVVLYDLDAEEKERIVLGHSEKLAV 600
           F S D  HPQ   +  +L  L+ +M+E GY  +T    L+D++ EEKE +V  HSEKLA+
Sbjct: 667 FTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAI 726

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           AFGLI+T  G  IRI KNLR+C DCH+ TKFISK   + I+VRD NRFHHF+NG+CSCGD
Sbjct: 727 AFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGD 786

Query: 661 YW 662
           YW
Sbjct: 787 YW 788



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 198/411 (48%), Gaps = 14/411 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   TY   + + +        + +H+H   +G   + F+ + ++++Y  F   + AR V
Sbjct: 111 PDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKV 170

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    R   +WN +    +     E+ + ++  M     G+  D  T   VL A VA  
Sbjct: 171 FDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDM--LDVGLSFDSTTLATVLTA-VAEL 227

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
             + L   G  I     + G +  V+++T LI +Y++ G       +F Q+   +++S++
Sbjct: 228 QEYRL---GMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYN 284

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI+ Y  N     A+ LFRE++     +  NS T+V ++        L+  ++I    L
Sbjct: 285 AMISGYTFNHETESAVTLFRELLASGQRV--NSSTLVGLIPVYLPFNHLQLSRLIQNLSL 342

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G+     V +AL T+Y R  +++  + +FD   ++ + SWN++IS Y  +G   +AI 
Sbjct: 343 KIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAIS 402

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F+EM+   +SP+P++  S+L AC+  G +  GK +   ++ E +   +V     +VD+ 
Sbjct: 403 LFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERL-ESNVYVSTALVDMY 460

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
            +   + EA ++  DL ++     W +++    +H +    + A K  +E+
Sbjct: 461 AKCGSIVEARQLF-DLMVDKNVVTWNAMITGYGLHGH---GKEALKLFYEM 507



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 202/415 (48%), Gaps = 18/415 (4%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
            +LS  L + + L  +G   D   +TKL + +    +V   R +F+K  +  ++++N L 
Sbjct: 25  TTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLI 84

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           R  +  G  +  + LY  +    T +R D FTY + + A    +      + G  +HA  
Sbjct: 85  RGFSDNGLPKSSIFLYTHLR-KKTNLRPDNFTYAFAISA----ASRLEDERVGVLLHAHS 139

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           +  G    + + + ++D+Y +F     A  VF  M  ++ V W+ MI+ ++RN    +++
Sbjct: 140 IVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSI 199

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
            +F +M+     L  +S T+ +VL A A L     G  I     ++GL S + V++ L++
Sbjct: 200 RVFVDML--DVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLIS 257

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV---SPS 390
           +Y++CGK   G+ +FD +D+ D++S+N++IS Y  +     A+ +F+E++  G    S +
Sbjct: 258 LYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSST 317

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
            +  + V    +H  L    + L  S++   +++PSV     +  +  R N+++ A ++ 
Sbjct: 318 LVGLIPVYLPFNHLQLSRLIQNL--SLKIGIILQPSVS--TALTTVYCRLNEVQFARQLF 373

Query: 451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           ++   E     W +++     +    L +RA     E+ P  + N V +  + +A
Sbjct: 374 DE-SPEKSLASWNAMISG---YTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSA 424



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
           N   + IR  RF  T +  A   S     LL    +I A ++ HG +  +  +T L   +
Sbjct: 5   NTATSAIRGQRFFLTLLNNATTLSQ----LL----QIQAQLILHGIHYDLSSITKLTHKF 56

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
              G V +   +F++++  ++  ++ +I  ++ NG+   ++ L+  +  ++ +L P++ T
Sbjct: 57  FDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKT-NLRPDNFT 115

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
               + A + L     G ++H + +  G+ S L V SA+V +Y +  + EL + VFD M 
Sbjct: 116 YAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMP 175

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
           +RD V WN++IS +  + Y   +I++F +M+  G+S    +  +VL A +
Sbjct: 176 ERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/578 (41%), Positives = 351/578 (60%), Gaps = 30/578 (5%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L+ C +  +LS    VHS    + F++       L+++YS    +D A  VF+K   R 
Sbjct: 257 VLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 316

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  W ++    T  GR +  ++L ++M   G  ++ D    T +L AC  S      L +
Sbjct: 317 VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEG--VKLDVVAITSILHACARSGS----LDN 370

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK++H  +  +     + +   L+DMYA+ G +  A  VFS M VK+++SW+ MI     
Sbjct: 371 GKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG---- 426

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
                              +L P+S TM  VL ACA+L+ALE+GK IHGYILR G  S  
Sbjct: 427 -------------------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDR 467

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +ALV +Y +CG L L + +FD +  +D+VSW  +I+ YG+HGYG +AI  F EM   
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 527

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ P  +SF+S+L ACSH+GL+E+G   F  M+ +  I P +EHYACMVDLL R   L +
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 587

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A + IE L I P   +WG+LL  CR + ++ELAE+ ++R+FELEP N+G YVLLA++YA 
Sbjct: 588 AYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAE 647

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE-FHPQFEQLHALLINLSA 564
           A+ W+EVKR++  +  +GL+K PG S IE+K K+  FVS +   HP  + + +LL  +  
Sbjct: 648 AEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRR 707

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           +MKE+G+ P+TK  L + D  +KE  + GHSEKLA+AFGL+     +TIR+TKNLR+C D
Sbjct: 708 KMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGD 767

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH   KF+SK   +EI++RD NRFHHF++G CSC  +W
Sbjct: 768 CHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 189/431 (43%), Gaps = 81/431 (18%)

Query: 35  CVSLNSSTTPTSL---SSRNKNELIQSLCKQGNLRQALDVLSI--EPNPTQHTYELLLLS 89
           C+ +  S TPT        + N  I   C+ G+L  A++++ +  +      TY  +L  
Sbjct: 49  CIPIRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCKKSELETKTYSSVLQL 108

Query: 90  CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVW 149
           C    S +D   VHS +  N    D  L  KL++ Y+    + + R VFD   ++ +Y+W
Sbjct: 109 CAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLW 168

Query: 150 N----------------ALFRALTLAG----RGEEVLELYRRM----------------- 172
           N                 LF+ +   G    R E   EL+ ++                 
Sbjct: 169 NFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVS 228

Query: 173 -----NGTGT-------GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
                 G G        GI  D  T   VL  C  S      L  GK +H+  ++  +  
Sbjct: 229 NGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSG----TLSLGKAVHSLAIKSSFER 284

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            ++   TL+DMY++ G +  A  VF +M  +NVVSW++MIA Y R+G +  A++L ++M 
Sbjct: 285 RINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQME 344

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
            E   L  + V + S+L ACA   +L+ GK +H YI    ++S L V +AL+ MYA+CG 
Sbjct: 345 KEGVKL--DVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGS 402

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +E    VF  M  +D++SWN++I                       + P   +   VL A
Sbjct: 403 MEAANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRTMACVLPA 441

Query: 401 CSHAGLVEEGK 411
           C+    +E GK
Sbjct: 442 CASLSALERGK 452



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 44/290 (15%)

Query: 54  ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           +L+Q + K+G     LDV++I           +L +C    SL +  +VH ++  N  + 
Sbjct: 338 KLLQQMEKEG---VKLDVVAITS---------ILHACARSGSLDNGKDVHDYIKANNMES 385

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           + F+   L+++Y+   S++ A  VF     + I  WN +         GE          
Sbjct: 386 NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI--------GE---------- 427

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
                ++ D  T   VL AC +     S L+ GKEIH  +LR+GY+   H+   L+D+Y 
Sbjct: 428 -----LKPDSRTMACVLPACAS----LSALERGKEIHGYILRNGYSSDRHVANALVDLYV 478

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G +  A  +F  +  K++VSW+ MIA Y  +G   EA+  F E  M    + P+ V+ 
Sbjct: 479 KCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNE--MRDAGIEPDEVSF 536

Query: 294 VSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKL 341
           +S+L AC+    LEQG     YI++    ++  L   + +V + +R G L
Sbjct: 537 ISILYACSHSGLLEQGWRFF-YIMKNDFNIEPKLEHYACMVDLLSRTGNL 585



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 123/229 (53%), Gaps = 8/229 (3%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +F ++  ++V+SW++MI+ Y  NG+    L ++++M+    D+  +  T++SVL  CA  
Sbjct: 207 LFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV--DLATIISVLVGCANS 264

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
             L  GK +H   ++   +  +   + L+ MY++CG L+    VF+ M +R+VVSW S+I
Sbjct: 265 GTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMI 324

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           + Y   G    AI++ ++M   GV    ++  S+L AC+ +G ++ GK + + ++  +M 
Sbjct: 325 AGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM- 383

Query: 424 RPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
                 + C  ++D+  +   +E A  +   + ++     W +++G  +
Sbjct: 384 --ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIIS-WNTMIGELK 429



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 56/215 (26%)

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELGQCVFD 349
           T  SVLQ CA L +   GK +H  I     G+D  L +   LV+ YA CG L+ G+ VFD
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGL--KLVSFYATCGDLKEGRRVFD 158

Query: 350 HMDK---------------------------------------------------RDVVS 358
            M+K                                                   RDV+S
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVIS 218

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           WNS+IS Y  +G   + + I+K+M+Y G+     + +SVL  C+++G +  GK +  S+ 
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV-HSLA 277

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            +      +     ++D+  +   L+ A ++ E +
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 312


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/614 (39%), Positives = 371/614 (60%), Gaps = 12/614 (1%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    K G+  +A  +          P + ++  +L  C+   +L+    VH+   +
Sbjct: 232 NVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMN 291

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   D  + T LI +Y    S++ AR VFDK + R +  W  + R        E+   L
Sbjct: 292 TGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGL 351

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M   G  I+ DR TY +++ AC ASS   SL    +EIH+ V+R G+   + + T L
Sbjct: 352 FATMQEEG--IQPDRITYIHIINAC-ASSADLSL---AREIHSQVVRAGFGTDLLVDTAL 405

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           + MYA+ G +  A  VF  M+ ++VVSWSAMI  Y  NG   EA E F   +M+ +++ P
Sbjct: 406 VHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFH--LMKRNNVEP 463

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + VT +++L AC  L AL+ G  I+   ++  L S +PV +AL+ M  + G +E  + +F
Sbjct: 464 DVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIF 523

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           ++M +RDVV+WN +I  Y +HG   +A+ +F  M+     P+ ++FV VL ACS AG VE
Sbjct: 524 ENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVE 583

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG+  F  +     I P++E Y CMVDLLGRA +L+EA  +I  + ++P   +W +LL +
Sbjct: 584 EGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAA 643

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRI+ N+++AERA++R    EP +   YV L+ +YAAA MW+ V +V++++E+RG++K  
Sbjct: 644 CRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQ 703

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G + IEV+ K+++FV  D  HPQ  +++A L  L   +K +GY+P T+ VL+++  +EKE
Sbjct: 704 GCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKE 763

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSEKLA+A+G+++   G  IRI KNLR+C DCHS +KFISK   +EI+ RD +RF
Sbjct: 764 EAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRF 823

Query: 649 HHFRNGVCSCGDYW 662
           HHF+NGVCSCGDYW
Sbjct: 824 HHFKNGVCSCGDYW 837



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 240/481 (49%), Gaps = 22/481 (4%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G++++A      ++     P+  T+ ++L +C+    L      H+ +  
Sbjct: 131 NAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIK 190

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF  D  + T L+++Y    S+D AR VFD   +R +  +N +      +G GE+  +L
Sbjct: 191 VGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQL 250

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + RM     G + +R ++  +L  C         L  GK +HA  +  G    V + T L
Sbjct: 251 FYRMQ--QEGFKPNRISFLSILDGCSTPEA----LAWGKAVHAQCMNTGLVDDVRVATAL 304

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MY   G +  A  VF +M V++VVSW+ MI  YA N    +A  LF    M+   + P
Sbjct: 305 IRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLF--ATMQEEGIQP 362

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + +T + ++ ACA+ A L   + IH  ++R G  + L V +ALV MYA+CG ++  + VF
Sbjct: 363 DRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVF 422

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M +RDVVSW+++I +Y  +G G +A + F  M  + V P  ++++++L AC H G ++
Sbjct: 423 DAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALD 482

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            G  ++    K  ++   +     ++++  +   +E A  I E++ ++     W  ++G 
Sbjct: 483 LGMEIYTQAIKADLV-SHIPVGNALINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGG 540

Query: 469 CRIHCN----VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR-VKRLLEARG 523
             +H N    ++L +R  K  F     N+  +V +    + A   +E +R    LL+ RG
Sbjct: 541 YSLHGNAREALDLFDRMLKERFR---PNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRG 597

Query: 524 L 524
           +
Sbjct: 598 I 598



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 156/321 (48%), Gaps = 8/321 (2%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           TY  L   C           V  H+  +G   + + +  LI ++S   ++ +AR  FD  
Sbjct: 63  TYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSV 122

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             +T+  WNA+       G  +E   L+R+M      +     T+  VL AC +S  G  
Sbjct: 123 ENKTVVTWNAIIAGYAQLGHVKEAFALFRQM--VDEAMEPSIITFLIVLDAC-SSPAG-- 177

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            LK GKE HA V++ G+     I T L+ MY + G +  A  VF  +  ++V +++ MI 
Sbjct: 178 -LKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIG 236

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            YA++G   +A +LF  M  E     PN ++ +S+L  C+   AL  GK +H   +  GL
Sbjct: 237 GYAKSGDGEKAFQLFYRMQQEGFK--PNRISFLSILDGCSTPEALAWGKAVHAQCMNTGL 294

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
              + V +AL+ MY  CG +E  + VFD M  RDVVSW  +I  Y  +     A  +F  
Sbjct: 295 VDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFAT 354

Query: 382 MIYHGVSPSPISFVSVLGACS 402
           M   G+ P  I+++ ++ AC+
Sbjct: 355 MQEEGIQPDRITYIHIINACA 375



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 120/206 (58%), Gaps = 2/206 (0%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK++   +++ G    ++ + TLI +++  G ++ A   F  +  K VV+W+A+IA YA+
Sbjct: 80  GKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQ 139

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G   EA  LFR+M+ E+ +  P+ +T + VL AC++ A L+ GK  H  +++ G  S  
Sbjct: 140 LGHVKEAFALFRQMVDEAME--PSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDF 197

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            + +ALV+MY + G ++  + VFD + KRDV ++N +I  Y   G G KA Q+F  M   
Sbjct: 198 RIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQE 257

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGK 411
           G  P+ ISF+S+L  CS    +  GK
Sbjct: 258 GFKPNRISFLSILDGCSTPEALAWGK 283



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 69/123 (56%)

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +S T V + Q C  L     GK +  +I++ G    +  ++ L+ +++ CG +   +  F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D ++ + VV+WN++I+ Y   G+  +A  +F++M+   + PS I+F+ VL ACS    ++
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 409 EGK 411
            GK
Sbjct: 180 LGK 182


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/594 (39%), Positives = 356/594 (59%), Gaps = 9/594 (1%)

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
           ++L         TY  +L +C     +     VHS +   G + D ++   L+ +Y+ F 
Sbjct: 151 EMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFG 210

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
            +  AR VFD+   R +  WN +               ++  M   G  + +D  T   +
Sbjct: 211 DMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAG--LFADCTTLLGL 268

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT-TLIDMYARFGCVMYAGFVFSQM 248
           L AC         +K GK IH   +R+         T +LI+MY    C++ A  +F ++
Sbjct: 269 LSACA----DLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERV 324

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             K+ VSW++MI  YARNG AFE+L LFR M ++     P+ VT ++VL AC  +AAL  
Sbjct: 325 RWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSG--PDQVTFIAVLGACDQIAALRY 382

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           G  IH Y++++G D+   V +ALV MY++CG L   + VFD M  + +VSW+++++ YG+
Sbjct: 383 GMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGL 442

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           HG G +AI I   M  + V P    F S+L ACSHAGLV EGK +F  M KE+ ++P++ 
Sbjct: 443 HGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALS 502

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
           HY+CMVDLLGRA  L+EA  II  + I+P   +W +LL + R+H N++LAE +++++F++
Sbjct: 503 HYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDM 562

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
            P    +Y+ L+++YAA   WD+V+RV+ ++  +GL+K PG S IE+   ++ F+  D+ 
Sbjct: 563 NPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKS 622

Query: 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
           H Q E ++A L  L  ++KE GY P T +V YD++ E KE+++  HSE+LA+AF LINT 
Sbjct: 623 HQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTG 682

Query: 609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            G  IRITKNLR+C DCH+ TK IS+   +EI++RD++RFHHF  G CSCGDYW
Sbjct: 683 PGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 139/270 (51%), Gaps = 14/270 (5%)

Query: 203 LKHGKEIHASVLRHG-YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            K G+++HA ++         ++ T L   YA  G +  A  +F  + +KN   W+ MI 
Sbjct: 75  FKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIR 134

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            YA NG+  ++L L+REM+        ++ T   VL+AC  L  +E G+ +H  ++  GL
Sbjct: 135 GYASNGLPMKSLVLYREMLCFGQR--ADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGL 192

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           +S + V ++L+ MYA+ G +   + VFD M +RD+ SWN++IS Y  +   G A  +F  
Sbjct: 193 ESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDL 252

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY-----ACMVDL 436
           M   G+     + + +L AC+    V+EGK++       + +R S+ +Y       ++++
Sbjct: 253 MGKAGLFADCTTLLGLLSACADLKAVKEGKVI-----HGYAVRNSIGNYNKFFTNSLIEM 307

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
               N + +A ++ E +R +     W S++
Sbjct: 308 YCNCNCMVDARRLFERVRWKDTVS-WNSMI 336



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 16/199 (8%)

Query: 66  RQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY 125
           R ALD       P Q T+  +L +C    +L   +++HS+L   GFD +  + T L+++Y
Sbjct: 354 RMALD----GSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMY 409

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
           S   S+  +R VFD+   +++  W+A+     L GRG E + +   M      +  D   
Sbjct: 410 SKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMK--ANSVIPDNGV 467

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN---GIVHIMTTLIDMYARFGCVMYAG 242
           +T +L AC  S  G  L+  GKEI   + +  YN    + H  + ++D+  R G +  A 
Sbjct: 468 FTSILSAC--SHAG--LVVEGKEIFYKMEKE-YNVKPALSH-YSCMVDLLGRAGHLDEAY 521

Query: 243 FVFSQMAVKNVVS-WSAMI 260
            +   M +K     W+A++
Sbjct: 522 VIIRTMEIKPTSDIWAALL 540


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/647 (37%), Positives = 370/647 (57%), Gaps = 44/647 (6%)

Query: 53  NELIQSLCKQGNLRQALD----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+ L    +   AL+    ++S    P ++T+  +  SCT      +   VH+H+  
Sbjct: 97  NHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLK 156

Query: 109 NGFDQDPFLVTKLINVYSH----------FDS---------------------VDDARHV 137
            G + + F+ T LIN+Y+           FD                      +D+AR +
Sbjct: 157 LGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEAREL 216

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+   R +  WNA+      +GR EE +  +  M      +  +  T   VL AC  S 
Sbjct: 217 FDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAK--VTPNVSTMLSVLSACAQSG 274

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
              S L+ G  + + +   G    + ++  LIDMY + G +  A  +F ++  KNVVSW+
Sbjct: 275 ---SSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWN 331

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            MI  Y       EAL LFR M+  + D  PN VT +S+L ACA L AL+ GK +H Y+ 
Sbjct: 332 VMIGGYTHMSCYKEALGLFRRMMQSNID--PNDVTFLSILPACANLGALDLGKWVHAYVD 389

Query: 318 R--RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           +  + + + + + ++L+ MYA+CG L + + +FD M+ + + +WN++IS + +HG+   A
Sbjct: 390 KNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTA 449

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           + +F  M   G  P  I+FV VL AC HAGL+  G+  F SM +++ + P + HY CM+D
Sbjct: 450 LGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMID 509

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495
           L GRA   +EA  +++++ ++P   +W SLLG+CRIH  +ELAE  +K LFELEP N   
Sbjct: 510 LFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSA 569

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           YVLL+++YA A  W++V +++  L    ++KVPG S IEV   ++ F+  D+ HPQ  ++
Sbjct: 570 YVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEI 629

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
           + +L  +   +++ G+VP T  VLYD+D E KE ++  HSEKLA+AFGLI+T  G TIRI
Sbjct: 630 YKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRI 689

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C +CHS TK ISK  N+EI+ RD NRFHHF++G CSC DYW
Sbjct: 690 MKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 221/455 (48%), Gaps = 59/455 (12%)

Query: 68  ALDVLSI-EPNPT-----QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKL 121
            L VLS  +P+P       H    LL +C    +L     +HS +   G     F ++KL
Sbjct: 10  TLQVLSFSDPSPPYKLVHDHPSLTLLSNC---KTLQTLKQIHSQIIKTGLHNTHFALSKL 66

Query: 122 IN---VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           I    V  H D +  A  +F   R     +WN + R L+ +      LE Y  M  +GT 
Sbjct: 67  IEFCAVSPHGD-LSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGT- 124

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG--YNGIVHIMTTLIDMYARFG 236
              + +T+  + K+C            GK++HA VL+ G  +N  VH  T+LI+MYA+ G
Sbjct: 125 -EPNEYTFPSIFKSCTKIRGA----HEGKQVHAHVLKLGLEHNAFVH--TSLINMYAQNG 177

Query: 237 CVMYA-------------------------GF------VFSQMAVKNVVSWSAMIACYAR 265
            ++ A                         GF      +F ++ V++VVSW+AMI+ YA+
Sbjct: 178 ELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQ 237

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA-ALAALEQGKMIHGYILRRGLDSI 324
           +G   EA+  F E  M    + PN  TM+SVL ACA + ++L+ G  +  +I  RGL S 
Sbjct: 238 SGRVEEAMAFFEE--MRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSN 295

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + +V+ L+ MY +CG LE    +F+ +  ++VVSWN +I  Y       +A+ +F+ M+ 
Sbjct: 296 IRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQ 355

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE-HMIRPSVEHYACMVDLLGRANKL 443
             + P+ ++F+S+L AC++ G ++ GK +   + K    ++ +V  +  ++D+  +   L
Sbjct: 356 SNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDL 415

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
             A +I + +  +     W +++    +H + + A
Sbjct: 416 AVAKRIFDCMNTK-SLATWNAMISGFAMHGHTDTA 449


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/598 (40%), Positives = 367/598 (61%), Gaps = 13/598 (2%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
           L +L     P   TY  +L +C           VH+ +   G ++D ++   ++++Y  F
Sbjct: 113 LKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKF 172

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
             V+ AR VFD+   R +  WN +       G      E++  M   G     DR T   
Sbjct: 173 GDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDG--FVGDRTTLLA 230

Query: 189 VLKACVASSCGFSL-LKHGKEIHASVLRHGYNGIV---HIMTTLIDMYARFGCVMYAGFV 244
           +L     S+CG  + LK GKEIH  V+R+G +G V    +M ++IDMY     V  A  +
Sbjct: 231 LL-----SACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKL 285

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F  + VK+VVSW+++I+ Y + G AF+ALELF  M++      P+ VT++SVL AC  ++
Sbjct: 286 FEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGA--VPDEVTVISVLAACNQIS 343

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           AL  G  +  Y+++RG    + V +AL+ MYA CG L     VFD M ++++ +   +++
Sbjct: 344 ALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVT 403

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
            +G+HG G +AI IF EM+  GV+P    F +VL ACSH+GLV+EGK +F  M +++ + 
Sbjct: 404 GFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVE 463

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484
           P   HY+C+VDLLGRA  L+EA  +IE+++++P   VW +LL +CR+H NV+LA  ++++
Sbjct: 464 PRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQK 523

Query: 485 LFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS 544
           LFEL P     YV L+++YAA   W++V+ V+ L+  R L+K P  S +E+ + ++ F  
Sbjct: 524 LFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFV 583

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604
            D  H Q + ++A L +L+ ++K+ GY P T +VLYD++ E KE+++  HSE+LA+AF L
Sbjct: 584 GDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFAL 643

Query: 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           INT  G TIRITKNLR+C DCH+  K ISK  N+EI++RD+ RFHHFR+G+CSCG YW
Sbjct: 644 INTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 182/330 (55%), Gaps = 14/330 (4%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNG-FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR 144
           LL S T+  SL+ AL +H+H+T  G   ++ +L TKL   Y+    +  A+H+FD+   +
Sbjct: 28  LLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLK 87

Query: 145 TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK 204
             ++WN++ R           L LY +M     G + D FTY +VLKA     CG  LL+
Sbjct: 88  NSFLWNSMIRGYACNNSPSRALFLYLKM--LHFGQKPDNFTYPFVLKA-----CGDLLLR 140

Query: 205 H-GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
             G+++HA V+  G    V++  +++ MY +FG V  A  VF +M V+++ SW+ M++ +
Sbjct: 141 EMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGF 200

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
            +NG A  A E+F +  M       +  T++++L AC  +  L+ GK IHGY++R G   
Sbjct: 201 VKNGEARGAFEVFGD--MRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESG 258

Query: 324 ILP---VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
            +    ++++++ MY  C  +   + +F+ +  +DVVSWNSLIS Y   G   +A+++F 
Sbjct: 259 RVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFG 318

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
            M+  G  P  ++ +SVL AC+    +  G
Sbjct: 319 RMVVVGAVPDEVTVISVLAACNQISALRLG 348



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 131/272 (48%), Gaps = 16/272 (5%)

Query: 203 LKHGKEIHASVLRHG-YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
           L    ++HA V   G      ++ T L   YA  G + YA  +F Q+ +KN   W++MI 
Sbjct: 38  LTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIR 97

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            YA N     AL L+ +M+       P++ T   VL+AC  L   E G+ +H  ++  GL
Sbjct: 98  GYACNNSPSRALFLYLKMLHFGQK--PDNFTYPFVLKACGDLLLREMGRKVHALVVVGGL 155

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           +  + V +++++MY + G +E  + VFD M  RD+ SWN+++S +  +G    A ++F +
Sbjct: 156 EEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGD 215

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC-------MV 434
           M   G      + +++L AC     ++ GK +       +++R       C       ++
Sbjct: 216 MRRDGFVGDRTTLLALLSACGDVMDLKVGKEI-----HGYVVRNGESGRVCNGFLMNSII 270

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           D+      +  A K+ E LR++     W SL+
Sbjct: 271 DMYCNCESVSCARKLFEGLRVKDVVS-WNSLI 301



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRG-LDSILPVVSALVTMYARCGKLELGQCV 347
           +S+   ++LQ+     +L Q   +H ++   G L     + + L   YA CG +   Q +
Sbjct: 21  DSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHI 80

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           FD +  ++   WNS+I  Y  +    +A+ ++ +M++ G  P   ++  VL AC    L 
Sbjct: 81  FDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLR 140

Query: 408 EEGK 411
           E G+
Sbjct: 141 EMGR 144


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/578 (41%), Positives = 350/578 (60%), Gaps = 30/578 (5%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L+ C +  +LS    VHS    + F++       L+++YS    +D A  VF+K   R 
Sbjct: 257 VLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 316

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  W ++    T  GR +  ++L ++M   G  ++ D    T +L AC  S      L +
Sbjct: 317 VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEG--VKLDVVAITSILHACARSGS----LDN 370

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK++H  +  +     + +   L+DMYA+ G +  A  VFS M VK+++SW+ MI     
Sbjct: 371 GKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG---- 426

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
                              +L P+S TM  VL ACA+L+ALE+GK IHGYILR G  S  
Sbjct: 427 -------------------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDR 467

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +ALV +Y +CG L L + +FD +  +D+VSW  +I+ YG+HGYG +AI  F EM   
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 527

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ P  +SF+S+L ACSH+GL+E+G   F  M+ +  I P +EHYACMVDLL R   L +
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 587

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A + +E L I P   +WG+LL  CR + ++ELAE+ ++R+FELEP N G YVLLA++YA 
Sbjct: 588 AYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAE 647

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE-FHPQFEQLHALLINLSA 564
           A+ W+EVKR++  +  +GL+K PG S IE+K K+  FVS +   HP  + + +LL  +  
Sbjct: 648 AEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRR 707

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           +MKE+G+ P+TK  L + D  +KE  + GHSEKLA+AFGL+     +TIR+TKNLR+C D
Sbjct: 708 KMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGD 767

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH   KF+SK   +EI++RD NRFHHF++G CSC  +W
Sbjct: 768 CHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 189/431 (43%), Gaps = 81/431 (18%)

Query: 35  CVSLNSSTTPTSL---SSRNKNELIQSLCKQGNLRQALDVLSI--EPNPTQHTYELLLLS 89
           C+ +  S TPT        + N  I   C+ G+L  A++++ +  +      TY  +L  
Sbjct: 49  CIPIRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCQKSELETKTYGSVLQL 108

Query: 90  CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVW 149
           C    S +D   VHS +  N    D  L  KL++ Y+    + + R VFD   ++ +Y+W
Sbjct: 109 CAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLW 168

Query: 150 N----------------ALFRALTLAG----RGEEVLELYRRM----------------- 172
           N                 LF+ +   G    R E   EL+ ++                 
Sbjct: 169 NFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVS 228

Query: 173 -----NGTGT-------GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
                 G G        GI  D  T   VL  C  S      L  GK +H+  ++  +  
Sbjct: 229 NGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSG----TLSLGKAVHSLAIKSSFER 284

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            ++   TL+DMY++ G +  A  VF +M  +NVVSW++MIA Y R+G +  A++L ++M 
Sbjct: 285 RINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQME 344

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
            E   L  + V + S+L ACA   +L+ GK +H YI    ++S L V +AL+ MYA+CG 
Sbjct: 345 KEGVKL--DVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGS 402

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +E    VF  M  +D++SWN++I                       + P   +   VL A
Sbjct: 403 MEAANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRTMACVLPA 441

Query: 401 CSHAGLVEEGK 411
           C+    +E GK
Sbjct: 442 CASLSALERGK 452



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 44/290 (15%)

Query: 54  ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           +L+Q + K+G     LDV++I           +L +C    SL +  +VH ++  N  + 
Sbjct: 338 KLLQQMEKEG---VKLDVVAITS---------ILHACARSGSLDNGKDVHDYIKANNMES 385

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           + F+   L+++Y+   S++ A  VF     + I  WN +         GE          
Sbjct: 386 NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI--------GE---------- 427

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
                ++ D  T   VL AC +     S L+ GKEIH  +LR+GY+   H+   L+D+Y 
Sbjct: 428 -----LKPDSRTMACVLPACAS----LSALERGKEIHGYILRNGYSSDRHVANALVDLYV 478

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G +  A  +F  +  K++VSW+ MIA Y  +G   EA+  F E  M    + P+ V+ 
Sbjct: 479 KCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNE--MRDAGIEPDEVSF 536

Query: 294 VSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKL 341
           +S+L AC+    LEQG     YI++    ++  L   + +V + +R G L
Sbjct: 537 ISILYACSHSGLLEQGWRFF-YIMKNDFNIEPKLEHYACMVDLLSRTGNL 585



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 123/229 (53%), Gaps = 8/229 (3%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +F ++  ++V+SW++MI+ Y  NG+    L ++++M+    D+  +  T++SVL  CA  
Sbjct: 207 LFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV--DLATIISVLVGCANS 264

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
             L  GK +H   ++   +  +   + L+ MY++CG L+    VF+ M +R+VVSW S+I
Sbjct: 265 GTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMI 324

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           + Y   G    AI++ ++M   GV    ++  S+L AC+ +G ++ GK + + ++  +M 
Sbjct: 325 AGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM- 383

Query: 424 RPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
                 + C  ++D+  +   +E A  +   + ++     W +++G  +
Sbjct: 384 --ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIIS-WNTMIGELK 429



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 56/215 (26%)

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELGQCVFD 349
           T  SVLQ CA L +   GK +H  I     G+D  L +   LV+ YA CG L+ G+ VFD
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGL--KLVSFYATCGDLKEGRRVFD 158

Query: 350 HMDK---------------------------------------------------RDVVS 358
            M+K                                                   RDV+S
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVIS 218

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           WNS+IS Y  +G   + + I+K+M+Y G+     + +SVL  C+++G +  GK +  S+ 
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV-HSLA 277

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            +      +     ++D+  +   L+ A ++ E +
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 312


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/617 (38%), Positives = 361/617 (58%), Gaps = 40/617 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH---------- 127
           P  + +  +L SC     L+   ++H ++   G D D +    L+N+YS           
Sbjct: 104 PDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQ 163

Query: 128 -------FD---------------SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
                  FD               S D  R +F+    + +  WN +       G  EE 
Sbjct: 164 RLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEET 223

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L + R M   G  ++ D FT + VL   +A +   S    GKEIH   +R G +  +++ 
Sbjct: 224 LRMIREMG--GANLKPDSFTLSSVL-PLIAENVDIS---RGKEIHGCSIRQGLDADIYVA 277

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           ++LIDMYA+   V  +  VF+ +  ++ +SW+++IA   +NG+  E L  FR+M+M    
Sbjct: 278 SSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK-- 335

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + P S +  S++ ACA L  L  GK +HGYI R G D  + + S+LV MYA+CG +   +
Sbjct: 336 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAK 395

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +FD M  RD+VSW ++I    +HG    AI++F++M   G+ P+ ++F++VL ACSH G
Sbjct: 396 QIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGG 455

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           LV+E    F SM ++  I P VEHYA + DLLGRA +LEEA   I  + I P   +W +L
Sbjct: 456 LVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATL 515

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           L +CR+H N+++AE+ + R+ E++P N G Y+LLA++Y+AA  W E  + +  +   G++
Sbjct: 516 LSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIR 575

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K P  S IEVK K+Y+F++ DE HP +E++   +  L   M+++GYVP T  V +D++ E
Sbjct: 576 KTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEE 635

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           +K+ +V  HSE+LA+ FG+INT  G TIR+TKNLR+C DCH+ TKFISK   +EI+VRD 
Sbjct: 636 QKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDN 695

Query: 646 NRFHHFRNGVCSCGDYW 662
           +RFHHF+NG CSCGDYW
Sbjct: 696 SRFHHFKNGTCSCGDYW 712



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 180/381 (47%), Gaps = 42/381 (11%)

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +YSH + + D+  +F+         W ++ R  T  G   + L  +  M    +G+  D 
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGM--LASGLYPDH 106

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
             +  VLK+C         L  G+ +H  ++R G +  ++    L++MY++   +  +G 
Sbjct: 107 NVFPSVLKSCAL----LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGR 162

Query: 244 --------------------------------VFSQMAVKNVVSWSAMIACYARNGMAFE 271
                                           +F  M  K++VSW+ +IA  ARNG+  E
Sbjct: 163 QRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEE 222

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
            L + RE  M   +L P+S T+ SVL   A    + +GK IHG  +R+GLD+ + V S+L
Sbjct: 223 TLRMIRE--MGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSL 280

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MYA+C ++     VF  + +RD +SWNS+I+    +G   + ++ F++M+   + P  
Sbjct: 281 IDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKS 340

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
            SF S++ AC+H   +  GK L   + + +    ++   + +VD+  +   +  A +I +
Sbjct: 341 YSFSSIMPACAHLTTLHLGKQLHGYITR-NGFDENIFIASSLVDMYAKCGNIRTAKQIFD 399

Query: 452 DLRIEPGPKVWGSLLGSCRIH 472
            +R+      W +++  C +H
Sbjct: 400 RMRLRDMVS-WTAMIMGCALH 419



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 152/323 (47%), Gaps = 14/323 (4%)

Query: 53  NELIQSLCKQG----NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G     LR   ++      P   T   +L     +  +S    +H     
Sbjct: 208 NTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIR 267

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G D D ++ + LI++Y+    V D+  VF     R    WN++       G  +E L  
Sbjct: 268 QGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRF 327

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +R+M      I+   ++++ ++ AC       + L  GK++H  + R+G++  + I ++L
Sbjct: 328 FRQM--LMAKIKPKSYSFSSIMPACAH----LTTLHLGKQLHGYITRNGFDENIFIASSL 381

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +DMYA+ G +  A  +F +M ++++VSW+AMI   A +G A +A+ELF +  ME+  + P
Sbjct: 382 VDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQ--METEGIKP 439

Query: 289 NSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           N V  ++VL AC+    +++  K  +      G+   +   +A+  +  R G+LE     
Sbjct: 440 NHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDF 499

Query: 348 FDHMDKRDVVS-WNSLISSYGVH 369
              M      S W +L+S+  VH
Sbjct: 500 ICGMHIGPTGSIWATLLSACRVH 522


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/637 (39%), Positives = 370/637 (58%), Gaps = 39/637 (6%)

Query: 58  SLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDAL----------------- 100
           SL + G+L+ A  V S  PNPT +T   ++  CT  N   +AL                 
Sbjct: 31  SLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYT 90

Query: 101 ---------------NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
                           +H H T  GF  D +    L+N+YS+   +  AR VFDK   +T
Sbjct: 91  FPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKT 150

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  W  +        +  E + L+ RM  +   ++ +  T   VL AC A +   +++K 
Sbjct: 151 VVSWATMIGVHAQWDQPNEAVRLFDRMMKS-ENVKPNEVTLVNVLTAC-ARARDLAMVK- 207

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
              IH  +  HG+   V + T L+D+Y + GCV  A  +F +   KN+ SW+ MI  +  
Sbjct: 208 --RIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVE 265

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           +    EAL LFREM  ++  +  + VTM S+L AC  L ALE GK +H YI ++ +D  +
Sbjct: 266 DSNYEEALLLFREM--QTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDV 323

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            + +ALV MYA+CG +E    VF  M ++DV++W +LI    + G    A+Q F EM   
Sbjct: 324 ALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIK 383

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           GV P  I+FV VL ACSHAG V+EG   F SM   + I+P++EHY  +VD+LGRA ++ E
Sbjct: 384 GVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAE 443

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A ++I+ + + P   V G LLG+CRIH N+E AERA+K+L E++P ++G YVLL+++Y +
Sbjct: 444 AEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKS 503

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
           +  W+E KR + L+  RG++K PG S+IEV   ++ FV  D  H Q  +++ +L ++ ++
Sbjct: 504 SKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISK 563

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           +K  GYVP    VL+D+  EEKE  +  HSEKLA+AFGL++TS G  IR+ KNLR+C DC
Sbjct: 564 LKNAGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDC 623

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           HS TK ISK  N+EI+VRD NRFHHF++G CSC  +W
Sbjct: 624 HSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 190/373 (50%), Gaps = 14/373 (3%)

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYS--HFDSVDDARHVFDKTRRRTIYVWNALF 153
           +S    +H+ +   G   DPF  +K++   S     S+  AR VF +    T Y  N++ 
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           R  T     +E L  Y+ M     G+  DR+T+  + K+C  SS        GK+IH   
Sbjct: 61  RGCTDKNLHQEALLFYQEM--MVQGLIPDRYTFPSLFKSCRNSS-------EGKQIHCHS 111

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
            + G+    +   TL++MY+  GC++ A  VF +M  K VVSW+ MI  +A+     EA+
Sbjct: 112 TKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAV 171

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
            LF  M M+S ++ PN VT+V+VL ACA    L   K IH YI   G    + + + L+ 
Sbjct: 172 RLFDRM-MKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMD 230

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           +Y +CG ++L + +FD   ++++ SWN +I+ +       +A+ +F+EM   G+    ++
Sbjct: 231 VYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVT 290

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
             S+L AC+H G +E GK L   ++K+  I   V     +VD+  +   +E A ++  ++
Sbjct: 291 MASLLLACTHLGALELGKWLHAYIKKQR-IDVDVALGTALVDMYAKCGSIETAIQVFHEM 349

Query: 454 RIEPGPKVWGSLL 466
             E     W +L+
Sbjct: 350 P-EKDVMTWTALI 361


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/614 (38%), Positives = 369/614 (60%), Gaps = 10/614 (1%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N  I      G+  +AL++L    S    P   T   +L +C    + +    +H  +  
Sbjct: 275 NAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVK 334

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              D D F+   L+++Y+    +DDAR VFD   RR + +WNAL    +  GR  EVL L
Sbjct: 335 AVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSL 394

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + RM   G  +  +R T   VLK+  +S      + H +++HA   + G     H++  L
Sbjct: 395 FHRMRKEGLDLDVNRTTLASVLKSTASSEA----ICHTRQVHALAEKIGLLSDSHVINGL 450

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           ID Y + G + YA  VF +    +++S + M+   ++     +A++LF +M+ +   L P
Sbjct: 451 IDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKG--LEP 508

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +S  + S+L AC +L+A EQGK +H ++++R   S +   +ALV  YA+CG +E     F
Sbjct: 509 DSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAF 568

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             + +R +VSW+++I     HG+G +A+ +F  M+  GV+P+ I+  SVL AC+HAGLV+
Sbjct: 569 SGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVD 628

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           + K  FESM++   I  + EHYACM+D+LGRA KLE+A +++ ++  +    VWG+LLG+
Sbjct: 629 DAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGA 688

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
            R+H + EL   A+++LF LEP  +G +VLLA+ YA+A MWDE+ +V++L++   ++K P
Sbjct: 689 SRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEP 748

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
             S +E+K K+++F+  D+ HP    ++  L  L   M + GYVP  +V L+D+D  EKE
Sbjct: 749 AMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEKE 808

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
            ++  HSE+LAVAF LI+T  G  IR+ KNLR+C DCH   K+ISK  ++EI++RD+NRF
Sbjct: 809 LLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRF 868

Query: 649 HHFRNGVCSCGDYW 662
           HHF NG CSCGDYW
Sbjct: 869 HHFTNGTCSCGDYW 882



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 132/496 (26%), Positives = 232/496 (46%), Gaps = 17/496 (3%)

Query: 39  NSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSD 98
           N+ +  T +S+  KN+  QS    G  R+   V S E  P +  +  ++ +CT    L  
Sbjct: 169 NAVSWNTMISAYVKND--QSGDAIGVFREM--VWSGE-RPNEFGFSCVVNACTGSRDLEA 223

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
              VH  +   G+++D F    L+++YS    ++ A  VF+K     +  WNA       
Sbjct: 224 GRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVT 283

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G     LEL  +M    +G+  + FT + VLKAC A +  F+L   G++IH  +++   
Sbjct: 284 HGHDHRALELLLQMK--SSGLVPNVFTLSSVLKAC-AGAGAFNL---GRQIHGFMVKAVA 337

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
           +    +   L+DMYA+ G +  A  VF  M  ++++ W+A+I+  + +G   E L LF  
Sbjct: 338 DFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHR 397

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M  E  DL  N  T+ SVL++ A+  A+   + +H    + GL S   V++ L+  Y +C
Sbjct: 398 MRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKC 457

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G+L+    VF      D++S  +++++     +G  AI++F +M+  G+ P      S+L
Sbjct: 458 GQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLL 517

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            AC+     E+GK +   + K           A +V    +   +E+A      L  E G
Sbjct: 518 NACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNA-LVYAYAKCGSIEDADMAFSGLP-ERG 575

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
              W +++G    H + + A     R+  L+   A N++ L  V +A +    V   K+ 
Sbjct: 576 IVSWSAMIGGLAQHGHGKRALDLFHRM--LDEGVAPNHITLTSVLSACNHAGLVDDAKKY 633

Query: 519 LEARGLQKVPGRSRIE 534
            E+  +++  G  R E
Sbjct: 634 FES--MKETFGIDRTE 647



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 178/380 (46%), Gaps = 21/380 (5%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           SL    ++HSHL  +G          L+ +YS       AR VFD+        W++L  
Sbjct: 19  SLFAGAHLHSHLLKSGLLAG--FSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVT 76

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
           A +  G   + L  +R M G G  +  + F    VLK C         ++ G ++HA  +
Sbjct: 77  AYSNNGMPRDALLAFRAMRGRG--VPCNEFALPVVLK-CAPD------VRFGAQVHALAV 127

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM----AVKNVVSWSAMIACYARNGMAF 270
                  V +   L+ +Y  FG V  A  +F +       +N VSW+ MI+ Y +N  + 
Sbjct: 128 ATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSG 187

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
           +A+ +FREM+       PN      V+ AC     LE G+ +HG ++R G +  +   +A
Sbjct: 188 DAIGVFREMVWSGER--PNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANA 245

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           LV MY++ G +E+   VF+ M   DVVSWN+ IS    HG+  +A+++  +M   G+ P+
Sbjct: 246 LVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPN 305

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC-MVDLLGRANKLEEAAKI 449
             +  SVL AC+ AG    G+ +   M K   +    E  A  +VD+  +   L++A K+
Sbjct: 306 VFTLSSVLKACAGAGAFNLGRQIHGFMVKA--VADFDEFVAVGLVDMYAKHGFLDDARKV 363

Query: 450 IEDLRIEPGPKVWGSLLGSC 469
             D        +W +L+  C
Sbjct: 364 F-DFMPRRDLILWNALISGC 382


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/620 (39%), Positives = 355/620 (57%), Gaps = 41/620 (6%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH------ 127
           +EPN   +T+  LL SC    S  +   +H+H+   GF  D F+ T LIN+Y+       
Sbjct: 125 VEPN--SYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNN 182

Query: 128 ----FDS---------------------VDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
               FD                      +D AR +FD+   + +  WNA+       GR 
Sbjct: 183 AQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRS 242

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
           +E L L+  M      +  +  T   VL AC  S+     L  G  + + +   G    +
Sbjct: 243 KEALLLFEDMRKAN--VPPNESTIVSVLSACAQSNA----LDLGNSMRSWIEDRGLCSNL 296

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
            ++  LIDMY++ G +  A  +F  M  ++V+SW+ MI  Y       EAL LFREM+  
Sbjct: 297 KLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLAS 356

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
             +  P  +T +S+L +CA L A++ GK IH YI +        + ++L+ +YA+CG + 
Sbjct: 357 GVE--PTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIV 414

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
             + VFD M  + + SWN++I    +HG   KA ++F +M   G+ P+ I+FV +L AC 
Sbjct: 415 AARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACK 474

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
           HAGLV+ G+  F SM +++ I P  +HY CM+DLLGRA   EEA  +++++ ++P   +W
Sbjct: 475 HAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIW 534

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
           GSLLG+CR H  VEL E  ++RLFELEP N G YVLL+++YA A  WD+V R++  L  R
Sbjct: 535 GSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDR 594

Query: 523 GLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
           G++KVPG + IEV   ++ F+  D+ HPQ E ++ +L  +  ++K  G+V  T  VLYD+
Sbjct: 595 GMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDM 654

Query: 583 DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILV 642
           D E KE  +  HSEKLA+AFGLI+T  G  IRI KNLR+C +CHS TK ISK  N+EI+ 
Sbjct: 655 DEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIA 714

Query: 643 RDVNRFHHFRNGVCSCGDYW 662
           RD NRFHHF++G CSC DYW
Sbjct: 715 RDRNRFHHFKDGSCSCNDYW 734



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/410 (30%), Positives = 215/410 (52%), Gaps = 43/410 (10%)

Query: 102 VHSHLTDNGFDQDPFLVTKLI--NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
           +H+H+   G     F ++KLI  +  S    +  A  +F+      +++WN++ R L+++
Sbjct: 48  IHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMS 107

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
                 L  + RM    +G+  + +T+ ++LK+C   +        GK+IHA VL+ G+ 
Sbjct: 108 LSPALALVFFVRM--IYSGVEPNSYTFPFLLKSCAKLASA----HEGKQIHAHVLKLGFV 161

Query: 220 GIVHIMTTLIDMYARFG--------------------CVMYAGF-----------VFSQM 248
             V I T+LI+MYA+ G                      + AG+           +F +M
Sbjct: 162 SDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEM 221

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
            VK+VVSW+AMIA YA+ G + EAL LF +  M   ++ PN  T+VSVL ACA   AL+ 
Sbjct: 222 PVKDVVSWNAMIAGYAQMGRSKEALLLFED--MRKANVPPNESTIVSVLSACAQSNALDL 279

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           G  +  +I  RGL S L +V+AL+ MY++CG L+  + +FD M +RDV+SWN +I  Y  
Sbjct: 280 GNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTH 339

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
                +A+ +F+EM+  GV P+ I+F+S+L +C+H G ++ GK +   + K +    S  
Sbjct: 340 MCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINK-NFNSVSTS 398

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
               ++DL  +   +  A ++ + ++I+     W +++    +H   + A
Sbjct: 399 LSTSLIDLYAKCGNIVAARQVFDGMKIKSLAS-WNAMICGLAMHGQADKA 447



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 132/240 (55%), Gaps = 9/240 (3%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYA--RFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           K+IHA +++ G +  +  ++ LI+  A  R G + YA  +F+ +   N+  W++MI   +
Sbjct: 46  KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLS 105

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
            +     AL  F  MI    +  PNS T   +L++CA LA+  +GK IH ++L+ G  S 
Sbjct: 106 MSLSPALALVFFVRMIYSGVE--PNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSD 163

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + + ++L+ MYA+ G++   Q VFD  + RD +S+ +LI+ Y + GY  +A Q+F EM  
Sbjct: 164 VFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPV 223

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
             V    +S+ +++   +  G  +E  +LFE MRK + + P+      ++    ++N L+
Sbjct: 224 KDV----VSWNAMIAGYAQMGRSKEALLLFEDMRKAN-VPPNESTIVSVLSACAQSNALD 278



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA--RCGKLELGQCVFDHM 351
           + +L  C ++   +Q   IH +I++ GL + L  +S L+   A  R G +     +F+ +
Sbjct: 33  LKLLSKCQSIRTFKQ---IHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSI 89

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           ++ ++  WNS+I    +      A+  F  MIY GV P+  +F  +L +C+      EGK
Sbjct: 90  EEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGK 149

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
            +   + K   +     H + ++++  ++ ++  A  + +
Sbjct: 150 QIHAHVLKLGFVSDVFIHTS-LINMYAQSGEMNNAQLVFD 188


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/621 (38%), Positives = 379/621 (61%), Gaps = 17/621 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I  L + G+  +AL   S    +   PT+ ++   + +C+    +      H     
Sbjct: 45  NSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFV 104

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+  D F+ + LI +YS    ++DAR VFD+  +R I  W ++ R   L G   + + L
Sbjct: 105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164

Query: 169 YRRM----NGTGTGIRSDRFTYTYVLKACV-ASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           ++ +    N     +  D      V+ AC    + G +     + IH+ V++ G++  V 
Sbjct: 165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLT-----ESIHSFVIKRGFDRGVS 219

Query: 224 IMTTLIDMYARFG--CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           +  TL+D YA+ G   V  A  +F Q+  K+ VS++++++ YA++GM+ EA E+FR ++ 
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLV- 278

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           ++  +  N++T+ +VL A +   AL  GK IH  ++R GL+  + V ++++ MY +CG++
Sbjct: 279 KNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRV 338

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           E  +  FD M  ++V SW ++I+ YG+HG+  KA+++F  MI  GV P+ I+FVSVL AC
Sbjct: 339 ETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SHAGL  EG   F +M+    + P +EHY CMVDLLGRA  L++A  +I+ ++++P   +
Sbjct: 399 SHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSII 458

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W SLL +CRIH NVELAE +  RLFEL+ +N G Y+LL+ +YA A  W +V+RV+ +++ 
Sbjct: 459 WSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKN 518

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           RGL K PG S +E+  +++ F+  DE HPQ E+++  L  L+ ++ E GYV  T  V +D
Sbjct: 519 RGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHD 578

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           +D EEKE  +  HSEKLA+AFG++NT  G T+ + KNLR+C DCH+  K ISK  ++E +
Sbjct: 579 VDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFV 638

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           VRD  RFHHF++G CSCGDYW
Sbjct: 639 VRDAKRFHHFKDGGCSCGDYW 659



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 11/166 (6%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +V SW+++IA  AR+G + EAL  F  M   S  L P   +    ++AC++L  +  GK 
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLS--LYPTRSSFPCAIKACSSLFDIFSGKQ 97

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
            H      G  S + V SAL+ MY+ CGKLE  + VFD + KR++VSW S+I  Y ++G 
Sbjct: 98  THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGN 157

Query: 372 GGKAIQIFKEMIYHGVSPSPISF------VSVLGACSHA---GLVE 408
              A+ +FK+++          F      VSV+ ACS     GL E
Sbjct: 158 ALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE 203


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/621 (38%), Positives = 379/621 (61%), Gaps = 17/621 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I  L + G+  +AL   S    +   PT+ ++   + +C+    +      H     
Sbjct: 45  NSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFV 104

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+  D F+ + LI +YS    ++DAR VFD+  +R I  W ++ R   L G   + + L
Sbjct: 105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSL 164

Query: 169 YRRM----NGTGTGIRSDRFTYTYVLKACV-ASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           ++ +    N     +  D      V+ AC    + G +     + IH+ V++ G++  V 
Sbjct: 165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLT-----ESIHSFVIKRGFDRGVS 219

Query: 224 IMTTLIDMYARFG--CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           +  TL+D YA+ G   V  A  +F Q+  K+ VS++++++ YA++GM+ EA E+FR ++ 
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLV- 278

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           ++  +  N++T+ +VL A +   AL  GK IH  ++R GL+  + V ++++ MY +CG++
Sbjct: 279 KNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRV 338

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           E  +  FD M  ++V SW ++I+ YG+HG+  KA+++F  MI  GV P+ I+FVSVL AC
Sbjct: 339 ETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SHAGL  EG   F +M+    + P +EHY CMVDLLGRA  L++A  +I+ ++++P   +
Sbjct: 399 SHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSII 458

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W SLL +CRIH NVELAE +  RLFEL+ +N G Y+LL+ +YA A  W +V+RV+ +++ 
Sbjct: 459 WSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKN 518

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           RGL K PG S +E+  +++ F+  DE HPQ E+++  L  L+ ++ E GYV  T  V +D
Sbjct: 519 RGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHD 578

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           +D EEKE  +  HSEKLA+AFG++NT  G T+ + KNLR+C DCH+  K ISK  ++E +
Sbjct: 579 VDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFV 638

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           VRD  RFHHF++G CSCGDYW
Sbjct: 639 VRDAKRFHHFKDGGCSCGDYW 659



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 11/166 (6%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +V SW+++IA  AR+G + EAL  F  M   S  L P   +    ++AC++L  +  GK 
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLS--LYPTRSSFPCAIKACSSLFDIFSGKQ 97

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
            H      G  S + V SAL+ MY+ CGKLE  + VFD + KRD+VSW S+I  Y ++G 
Sbjct: 98  THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGN 157

Query: 372 GGKAIQIFKEMIYHGVSPSPISF------VSVLGACSHA---GLVE 408
              A+ +FK+++          F      VSV+ ACS     GL E
Sbjct: 158 ALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE 203


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/541 (42%), Positives = 341/541 (63%), Gaps = 8/541 (1%)

Query: 122 INVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
           I   SH  SVD  R +F+    + +  WN +       G   E L + R M G    ++ 
Sbjct: 241 IKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGAN--LKP 298

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
           D FT + VL   +A +   S    GKEIH   +R G +  V++ ++LIDMYA+   V+ +
Sbjct: 299 DSFTLSSVL-PLIAENVDIS---KGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDS 354

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
             VF+ +  ++ +SW+++IA   +NG+  E L+ FR+M+M    + P S +  S++ ACA
Sbjct: 355 YRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAK--IKPKSYSFSSIMPACA 412

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            L  L  GK +HGYI R G D  + + S+LV MYA+CG +   + +FD M  RD+VSW +
Sbjct: 413 HLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTA 472

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +I    +HG+   AI++F++M   G+ P+ ++F++VL ACSHAGLV+E    F SM  + 
Sbjct: 473 MIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDF 532

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
            I P VEHYA + DLLGRA +LEEA   I  + I P   VW +LL +CR+H NV++AE+ 
Sbjct: 533 GIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKV 592

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS 541
           + R+ E++P N G Y+LLA++Y+AA  W E  + +  L   G++K P  S IEV+ K+Y+
Sbjct: 593 ANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYA 652

Query: 542 FVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVA 601
           F++ DE HP +E++   +  L   M+++GYVP T  V +D++ E+K+ +V  HSE+LA+ 
Sbjct: 653 FMAGDESHPCYEKIREAMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIV 712

Query: 602 FGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
           FG+INT  G TIR+TKNLR+C DCH+ TKFISK   +EI+VRD +RFHHF+NG CSCGDY
Sbjct: 713 FGIINTPAGTTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDY 772

Query: 662 W 662
           W
Sbjct: 773 W 773



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 144/294 (48%), Gaps = 10/294 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L     +  +S    +H      G D + ++ + LI++Y+    V D+  V
Sbjct: 298 PDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRV 357

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F     R    WN++       G  +E L+ +R+M      I+   ++++ ++ AC    
Sbjct: 358 FTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQM--LMAKIKPKSYSFSSIMPACAH-- 413

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
              + L  GK++H  + R+G++  + I ++L+DMYA+ G +  A  +F +M ++++VSW+
Sbjct: 414 --LTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWT 471

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYI 316
           AMI   A +G A +A+ELF +M  E  +  PN V  ++VL AC+    +++  K  +   
Sbjct: 472 AMIMGCALHGHALDAIELFEQMKTEGIE--PNYVAFMAVLTACSHAGLVDEAWKYFNSMT 529

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS-WNSLISSYGVH 369
           L  G+   +   +A+  +  R G+LE        M      S W +L+S+  VH
Sbjct: 530 LDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVH 583



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 34  CCVSLNSSTTPTSLSSRNK---NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELL 86
           C   ++S    T L+ R+    N +I    + G   + L     +L  +  P  +++  +
Sbjct: 348 CTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSI 407

Query: 87  LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI 146
           + +C H  +L     +H ++T NGFD++ F+ + L+++Y+   ++  AR +FD+ R R +
Sbjct: 408 MPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDM 467

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
             W A+     L G   + +EL+ +M     GI  +   +  VL AC
Sbjct: 468 VSWTAMIMGCALHGHALDAIELFEQMK--TEGIEPNYVAFMAVLTAC 512



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 9/118 (7%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +F+ +     ++W ++I CY  +G+  ++L  F  M+  +  L P+     SVL+ACA L
Sbjct: 64  LFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGML--ASGLYPDHNVFPSVLKACAML 121

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYA------RCGKLELGQC-VFDHMDKR 354
             L  G+ +HGYI+R GLD  L   +AL+ MY+      + G+  LG   V D M +R
Sbjct: 122 MDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTER 179



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 72/364 (19%), Positives = 147/364 (40%), Gaps = 56/364 (15%)

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +YSH + + D+  +F+         W ++ R  T  G   + L  +  M    +G+  D 
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGM--LASGLYPDH 108

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
             +  VLKAC         L  G+ +H  ++R G +  ++    L++MY++   +  +G 
Sbjct: 109 NVFPSVLKACAM----LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGR 164

Query: 244 -------VFSQMA--VKNVVSWSAMIACYARNGMAFEALEL--------FREMIMESHDL 286
                  V  +M    ++V + S ++    R     EA           F   ++E  D 
Sbjct: 165 QRLGASQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEI-DY 223

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P S      ++AC        G+ I        +DS+                    + 
Sbjct: 224 KPRS--EYREMEAC------NLGQQIKDISHSMSVDSV--------------------RK 255

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +F+ M ++D+VSWN++I+    +G  G+ + + +EM    + P   +  SVL   +    
Sbjct: 256 IFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVD 315

Query: 407 VEEGKMLFE-SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           + +GK +   S+R+   +   V   + ++D+  +  ++ ++ ++   L    G   W S+
Sbjct: 316 ISKGKEIHGCSIRQG--LDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGIS-WNSI 372

Query: 466 LGSC 469
           +  C
Sbjct: 373 IAGC 376


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/564 (40%), Positives = 349/564 (61%), Gaps = 11/564 (1%)

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            + +HS  T  G     +++T  I++YS    +  A  +F + RR  I  +NA+    T 
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTS 299

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G  E  L L++ +  +G  ++S     T V    V+         HG  + ++ L H  
Sbjct: 300 NGETELSLSLFKELMLSGAKLKSS----TLVSLVPVSGHLMLIYAIHGYSLKSNFLSH-- 353

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
                + T L  +Y++   +  A  +F +   K++ SW+AMI+ Y +NG+  +A+ LFRE
Sbjct: 354 ---TSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFRE 410

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M  ++ +  PN VT+  +L ACA L AL  GK +H  +     +S + V +AL+ MYA+C
Sbjct: 411 M--QNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKC 468

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G +   + +FD M K++ V+WN++IS YG+HG+G +A+ IF EM+  G++P+P++F+ VL
Sbjct: 469 GSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVL 528

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSHAGLV+EG  +F SM   +   PSV+HYAC+VD+LGRA  L+ A + IE + I+PG
Sbjct: 529 YACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPG 588

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
           P VW +LLG+CRIH +  LA   S++LFEL+P N G +VLL+++++A   + +   V++ 
Sbjct: 589 PSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQT 648

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
            + R L K PG + IE+    + F S D+ HPQ + +H  L  L  +M+E GY P+T++ 
Sbjct: 649 AKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELA 708

Query: 579 LYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANK 638
           L+D++ EE+E +V  HSE+LA+AFGLI T  G  IRI KNLR+C DCH+ TK ISK   +
Sbjct: 709 LHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITER 768

Query: 639 EILVRDVNRFHHFRNGVCSCGDYW 662
            I+VRD NRFHHF++GVCSCGDYW
Sbjct: 769 VIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 194/416 (46%), Gaps = 19/416 (4%)

Query: 58  SLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL 117
           SL    +LR++ D+      P   TY   + + +          +H     +G D +  L
Sbjct: 102 SLAVFAHLRKSTDL-----KPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLL 156

Query: 118 VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM-NGTG 176
            + ++ +Y  F  V+DAR VFD+   +   +WN +           E ++++R + N + 
Sbjct: 157 GSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESC 216

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
           T  R D  T   +L A          L+ G +IH+   + G     +++T  I +Y++ G
Sbjct: 217 T--RLDTTTLLDILPAVAE----LQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCG 270

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            +  A  +F +    ++V+++AMI  Y  NG    +L LF+E+++    L   S T+VS+
Sbjct: 271 KIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKL--KSSTLVSL 328

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           +     L  +     IHGY L+    S   V +AL T+Y++  ++E  + +FD   ++ +
Sbjct: 329 VPVSGHLMLI---YAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSL 385

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
            SWN++IS Y  +G    AI +F+EM     SP+P++   +L AC+  G +  GK + + 
Sbjct: 386 PSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDL 445

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           +R       S+     ++ +  +   + EA ++  D   +     W +++    +H
Sbjct: 446 VRSTDF-ESSIYVSTALIGMYAKCGSIAEARRLF-DFMPKKNEVTWNTMISGYGLH 499



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 186/375 (49%), Gaps = 15/375 (4%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
            S+S     H+ +  +GF  D  L+TKL    S   ++  AR +F   +R  ++++N L 
Sbjct: 31  TSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLM 90

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           R  ++       L ++  +  + T ++ +  TY + + A    + GF   + G  IH   
Sbjct: 91  RGFSVNESPHSSLAVFAHLRKS-TDLKPNSSTYAFAISA----ASGFRDDRAGCVIHGQA 145

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           +  G +  + + + ++ MY +F  V  A  VF +M  K+ + W+ MI+ Y +N M  E++
Sbjct: 146 IVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESI 205

Query: 274 ELFREMIMESHDLCP--NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           ++FR++I ES   C   ++ T++ +L A A L  L  G  IH    + G  S   V++  
Sbjct: 206 QVFRDLINES---CTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGF 262

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           +++Y++CGK+++   +F    + D+V++N++I  Y  +G    ++ +FKE++  G     
Sbjct: 263 ISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKS 322

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
            + VS++    H  L+    +   S++   +   SV     +  +  + N++E A K+ +
Sbjct: 323 STLVSLVPVSGHLMLIY--AIHGYSLKSNFLSHTSVS--TALTTVYSKLNEIESARKLFD 378

Query: 452 DLRIEPGPKVWGSLL 466
           +   +  P  W +++
Sbjct: 379 ESPEKSLPS-WNAMI 392



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 17/219 (7%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I    + G    A+ +          PNP   T   +L +C    +LS    VH  +
Sbjct: 389 NAMISGYTQNGLTEDAISLFREMQNSEFSPNPV--TITCILSACAQLGALSLGKWVHDLV 446

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
               F+   ++ T LI +Y+   S+ +AR +FD   ++    WN +     L G G+E L
Sbjct: 447 RSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEAL 506

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL-RHGYNGIVHIM 225
            ++  M    +GI     T+  VL AC  S  G  L+K G EI  S++ R+G+   V   
Sbjct: 507 TIFSEM--LNSGIAPTPVTFLCVLYAC--SHAG--LVKEGDEIFNSMIHRYGFEPSVKHY 560

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMI-AC 262
             ++D+  R G +  A      M ++   S W  ++ AC
Sbjct: 561 ACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGAC 599


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/594 (40%), Positives = 367/594 (61%), Gaps = 10/594 (1%)

Query: 72  LSIEPNPTQHT-YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           LS  P+P  H+ Y  +L SC    ++     +H+ L  +G   D  L T+L+++Y+    
Sbjct: 59  LSPCPSPYNHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGH 118

Query: 131 VDDARHVFDKTRRR-TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           V  AR VFD+   +  +++WN L RA    G  E  +ELYR M   G+ ++ D FTY  V
Sbjct: 119 VSLARRVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGS-MKPDNFTYPPV 177

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           LKAC A       L  G+E+H  V+R  +   V + T LIDMYA+ GC+  A  VF+   
Sbjct: 178 LKACAA----LLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTT 233

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
           +++   W++MIA   +NG   EAL L R M  E   + P   T+VS + A A  +AL +G
Sbjct: 234 IRDAAVWNSMIAACGQNGRPAEALTLCRNMAAEG--IAPTIATLVSAISAAAVASALPRG 291

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           + +HGY  RRG  S   + ++L+ MYA+ G + +   +F+ +  R+++SWN++I  +G+H
Sbjct: 292 RELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMH 351

Query: 370 GYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           G+   A ++F  M     V P  I+FV VL AC+H G+V+E K +F+ M   + I+P+V+
Sbjct: 352 GHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQ 411

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
           HY C+VD+LG + + +EA+ +I+ + ++P   +WG+LL  C+IH NVELAE A ++L EL
Sbjct: 412 HYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIEL 471

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
           EP +AGNYVLL+++YA +  W+E  RV++L+  RGL+K+   S IE+K K + F+  D  
Sbjct: 472 EPEDAGNYVLLSNIYAESGKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDAS 531

Query: 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
           HP+ + ++  L  L   + + GYVP T  V ++++ +EK  +V GHSE+LA+AFGLI+T 
Sbjct: 532 HPRSDDIYEELERLEGLISQTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTP 591

Query: 609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
               + +TKNLR+CEDCH   K IS+   +EI++RDVNR+HHF NG CSC D+W
Sbjct: 592 PRTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/626 (37%), Positives = 382/626 (61%), Gaps = 28/626 (4%)

Query: 45  TSLSSRNKN-------ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLS 97
           T L+S +KN       +L + + K+G L  + +++              + +C   +   
Sbjct: 83  TILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLV------------FAVKACFGLSLFQ 130

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALT 157
            A   HS       + DP++   L+NVY+   S+++A  VF++   +   +W  + +   
Sbjct: 131 GAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHL 190

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
                  V EL+ RM  +G  +  D F    +++AC     G    K GK  H   ++  
Sbjct: 191 NFSEEFGVFELFSRMRRSGFEL--DPFVVEGLIQACGNVYAG----KEGKTFHGLCIKKN 244

Query: 218 Y-NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
           + +    + T+L+DMY + G + +A  +F +++ ++VV WSA+IA +ARNG A E++ +F
Sbjct: 245 FIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMF 304

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
           R+M+ +S  + PNSVT  S++ AC++L +L+QG+ +HGY++R G++  +   ++ + MYA
Sbjct: 305 RQMLADS--VTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYA 362

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CG +     VF  + +++V SW+++I+ +G+HG   +A+ +F EM      P+ ++FVS
Sbjct: 363 KCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVS 422

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           VL ACSH+G +EEG   F+SM +++ I P  EHYACMVDLLGRA K++EA   I ++  E
Sbjct: 423 VLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTE 482

Query: 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516
           PG   WG+LLG+CRIH   ELAE  +K+L  LE   +G YV+L+++YA   MW+ VK+ +
Sbjct: 483 PGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTR 542

Query: 517 RLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTK 576
             +  +G+ K+ G + IE++ K+Y F S D F  +  Q+ +L  +L   M+E GYVP  +
Sbjct: 543 LKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLR 602

Query: 577 VVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFA 636
            VL+D+D E K+ ++ GHSEKLA+ FGL+N+ +G  IRITKN+R+C DCH+ +KFIS   
Sbjct: 603 FVLHDVDDEVKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLIT 662

Query: 637 NKEILVRDVNRFHHFRNGVCSCGDYW 662
            ++I++RDV RFHH ++GVCSCGDYW
Sbjct: 663 RRKIIMRDVKRFHHVQDGVCSCGDYW 688



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 114/251 (45%), Gaps = 2/251 (0%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L    +++A +L +  +  +     +   Y + G +  A   F+ +  +N+ SW+ ++A 
Sbjct: 28  LASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILAS 87

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           +++N   ++ L+LF+ M+ E   +  +S  +V  ++AC  L+  +  K+ H   ++  L+
Sbjct: 88  HSKNKCFYDVLQLFKRMLKEGKLV--DSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLE 145

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
               V  AL+ +Y   G LE    VF+ +  ++ V W  +I  +          ++F  M
Sbjct: 146 GDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRM 205

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              G    P     ++ AC +    +EGK       K++ I  +      +VD+  +   
Sbjct: 206 RRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGF 265

Query: 443 LEEAAKIIEDL 453
           L+ A K+ E++
Sbjct: 266 LDFALKLFEEI 276



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 15/206 (7%)

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T++S+ +    LA+  Q   ++  IL   L   L     +   Y + G L +    F+H+
Sbjct: 17  TLLSLFRFTKTLASNHQ---LNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHI 73

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
              ++ SWN++++S+  +      +Q+FK M+  G      + V  + AC    L  +G 
Sbjct: 74  TFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLF-QGA 132

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
            LF S+  +  +         ++++      LEEA K+ E++ ++    +WG ++   + 
Sbjct: 133 KLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLK-NSVIWGVMI---KG 188

Query: 472 HCN-------VELAERASKRLFELEP 490
           H N        EL  R  +  FEL+P
Sbjct: 189 HLNFSEEFGVFELFSRMRRSGFELDP 214


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/597 (40%), Positives = 366/597 (61%), Gaps = 17/597 (2%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
           +D  S+EP+ T   Y  LL  CT    L +   VH H+ ++ F  D  +   L+ +Y+  
Sbjct: 65  IDCGSLEPDRT--LYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARC 122

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
            S++ AR +FD+   R +  W ++        R  + L L+ RM     G   + FT + 
Sbjct: 123 GSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRM--LSDGAEPNEFTLSS 180

Query: 189 VLKAC---VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
           ++K C    + +CG       ++IHA   ++G +  V + ++L+DMYAR G +  A  VF
Sbjct: 181 LVKCCGYMASYNCG-------RQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVF 233

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
            ++  KN VSW+A+IA YAR G   EAL LF  M  E +   P   T  ++L +C+++  
Sbjct: 234 DKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYR--PTEFTYSALLSSCSSMGC 291

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           LEQGK +H ++++     +  V + L+ MYA+ G +   + VFD + K DVVS NS++  
Sbjct: 292 LEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIG 351

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           Y  HG G +A Q F EMI  G+ P+ I+F+SVL ACSHA L++EGK  F  MRK + I P
Sbjct: 352 YAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRK-YNIEP 410

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
            V HYA +VDLLGRA  L++A   IE++ IEP   +WG+LLG+ ++H N E+   A++R+
Sbjct: 411 KVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRV 470

Query: 486 FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSV 545
           FEL+P+  G + LLA++YA+A  W++V +V+++++  G++K P  S +EV+  ++ FV+ 
Sbjct: 471 FELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVAN 530

Query: 546 DEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLI 605
           D  HPQ E++H +   L+ ++KE GYVP T  VL  +D +EKE  +  HSEKLA++F L+
Sbjct: 531 DVAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALL 590

Query: 606 NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NT  G TIRI KN+R+C DCHS  K++S    +EI+VRD NRFHHF +G CSCGDYW
Sbjct: 591 NTPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 1/174 (0%)

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           +++   L P+     ++L+ C  L  L++GK++H ++L       L + ++L+ MYARCG
Sbjct: 64  LIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCG 123

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            LE  + +FD M  RD+VSW S+I+ Y  +     A+ +F  M+  G  P+  +  S++ 
Sbjct: 124 SLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVK 183

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            C +      G+ +     K +    +V   + +VD+  R   L EA  + + L
Sbjct: 184 CCGYMASYNCGRQIHACCWK-YGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKL 236


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/578 (41%), Positives = 349/578 (60%), Gaps = 30/578 (5%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L+ C    +LS    VHS    + F++       L+++YS    +D A  VF+K   R 
Sbjct: 119 VLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 178

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  W ++    T  G  +  + L ++M   G  ++ D    T +L AC  S      L +
Sbjct: 179 VVSWTSMIAGYTRDGWSDGAIILLQQMEKEG--VKLDVVAITSILHACARSGS----LDN 232

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK++H  +  +     + +   L+DMYA+ G +  A  VFS M VK+++SW+ M+     
Sbjct: 233 GKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG---- 288

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
                              +L P+S TM  +L ACA+L+ALE+GK IHGYILR G  S  
Sbjct: 289 -------------------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR 329

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +ALV +Y +CG L L + +FD +  +D+VSW  +I+ YG+HGYG +AI  F EM   
Sbjct: 330 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 389

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ P  +SF+S+L ACSH+GL+E+G   F  M+ +  I P +EHYACMVDLL R   L +
Sbjct: 390 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 449

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A K IE L I P   +WG+LL  CRI+ ++ELAE+ ++R+FELEP N G YVLLA++YA 
Sbjct: 450 AYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAE 509

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE-FHPQFEQLHALLINLSA 564
           A+ W+EVKR++  +  +GL+K PG S IE+K ++  FVS +   HP  +++ +LL  +  
Sbjct: 510 AEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRR 569

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           +MKE+GY P+TK  L + D  +KE  + GHSEKLA+AFGL+     +TIR+TKNLR+C D
Sbjct: 570 KMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGD 629

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH   KF+SK   +EI++RD NRFHHF++G CSC  +W
Sbjct: 630 CHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 150/341 (43%), Gaps = 76/341 (22%)

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWN----------------ALFRALTLAG--- 160
           KL++ Y+    + + R VFD   ++ +Y+WN                 LF+ +   G   
Sbjct: 1   KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 60

Query: 161 -RGEEVLELYRRM----------------------NGTGT-------GIRSDRFTYTYVL 190
            R E   EL+ ++                       G G        GI  D  T   VL
Sbjct: 61  KRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 120

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
             C  S      L  GK +H+  ++  +   ++   TL+DMY++ G +  A  VF +M  
Sbjct: 121 VGCAKSGT----LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 176

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           +NVVSW++MIA Y R+G +  A+ L ++M  E   L  + V + S+L ACA   +L+ GK
Sbjct: 177 RNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKL--DVVAITSILHACARSGSLDNGK 234

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +H YI    + S L V +AL+ MYA+CG +E    VF  M  +D++SWN+++       
Sbjct: 235 DVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE----- 289

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
                           + P   +   +L AC+    +E GK
Sbjct: 290 ----------------LKPDSRTMACILPACASLSALERGK 314



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 125/232 (53%), Gaps = 8/232 (3%)

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  +F ++  ++V+SW++MI+ Y  NG+    L ++++M+    D+  +  T++SVL  C
Sbjct: 66  ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV--DLATIISVLVGC 123

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           A    L  GK +H   ++   +  +   + L+ MY++CG L+    VF+ M +R+VVSW 
Sbjct: 124 AKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 183

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           S+I+ Y   G+   AI + ++M   GV    ++  S+L AC+ +G ++ GK + + ++  
Sbjct: 184 SMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 243

Query: 421 HMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           +M   +   + C  ++D+  +   +E A  +   + ++     W +++G  +
Sbjct: 244 NM---ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKD-IISWNTMVGELK 291



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 52/174 (29%)

Query: 331 LVTMYARCGKLELGQCVFDHMDK------------------------------------- 353
           LV+ YA CG L+ G+ VFD M+K                                     
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 354 --------------RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
                         RDV+SWNS+IS Y  +G   + + I+K+M+Y G+     + +SVL 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            C+ +G +  GK +  S+  +      +     ++D+  +   L+ A ++ E +
Sbjct: 122 GCAKSGTLSLGKAV-HSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 174



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 17/252 (6%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E  P   T   +L +C   ++L     +H ++  NG+  D  +   L+++Y     +  A
Sbjct: 289 ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLA 348

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R +FD    + +  W  +     + G G E +  +  M     GI  D  ++  +L AC 
Sbjct: 349 RLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMR--DAGIEPDEVSFISILYACS 406

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYN---GIVHIMTTLIDMYARFGCVMYA-GFVFSQMAV 250
            S     LL+ G      ++++ +N    + H    ++D+ +R G +  A  F+ +    
Sbjct: 407 HS----GLLEQGWRFFY-IMKNDFNIEPKLEH-YACMVDLLSRTGNLSKAYKFIETLPIA 460

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA-ALEQG 309
            +   W A++ C  R    +  +EL  ++     +L P +     +L    A A   E+ 
Sbjct: 461 PDATIWGALL-CGCR---IYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEV 516

Query: 310 KMIHGYILRRGL 321
           K +   I ++GL
Sbjct: 517 KRMREKIGKKGL 528


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/612 (37%), Positives = 370/612 (60%), Gaps = 12/612 (1%)

Query: 55   LIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
            +I  L ++G  R+A +V     +    P Q T   L+ + T    L    ++H+ +   G
Sbjct: 402  IITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYG 461

Query: 111  FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
            F+ D  +   L+ +Y    SV D   VF+ T  R +  WNAL          +  L ++ 
Sbjct: 462  FEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFN 521

Query: 171  RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            +M     G   + +T+  +L++C +     S +  GK++HA ++++  +G   + T L+D
Sbjct: 522  QM--LAEGFNPNMYTFISILRSCSS----LSDVDLGKQVHAQIVKNSLDGNDFVGTALVD 575

Query: 231  MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
            MYA+   +  A  +F+++  +++ +W+ ++A YA++G   +A++ F +M  E   + PN 
Sbjct: 576  MYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREG--VKPNE 633

Query: 291  VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
             T+ S L  C+ +A L+ G+ +H   ++ G    + V SALV MYA+CG +E  + VFD 
Sbjct: 634  FTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDG 693

Query: 351  MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
            +  RD VSWN++I  Y  HG GGKA++ F+ M+  G  P  ++F+ VL ACSH GL+EEG
Sbjct: 694  LVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEG 753

Query: 411  KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
            K  F S+ K + I P++EHYACMVD+LGRA K  E    IE++++     +W ++LG+C+
Sbjct: 754  KKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACK 813

Query: 471  IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
            +H N+E  ERA+ +LFELEP    NY+LL++++AA  MWD+V  V+ L+  RG++K PG 
Sbjct: 814  MHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGC 873

Query: 531  SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
            S +EV  +++ F+S D  HP+  ++H  L +L  ++   GY P T  VL+++   EK+ +
Sbjct: 874  SWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQEL 933

Query: 591  VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
            +  HSE+LA+AF L++TS  +TIRI KNLR+C DCH F K IS+  N+E++VRD+N FHH
Sbjct: 934  LFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHH 993

Query: 651  FRNGVCSCGDYW 662
            F+NG CSC ++W
Sbjct: 994  FKNGSCSCQNFW 1005



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 182/369 (49%), Gaps = 18/369 (4%)

Query: 43  TPTSLSSRNK------NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSL 96
           TP+ LSS N+      N++ +++ K+   R     L  +       Y  +L +C     L
Sbjct: 89  TPSKLSSPNRPNSTPGNKIPETVEKKRIWRG----LDFDSKGRLRQYSGMLRTCASKGDL 144

Query: 97  SDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL 156
           ++   +H  +  +G + D  L   L+NVY+   S + A  VF +   R +  W AL    
Sbjct: 145 NEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGF 204

Query: 157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
              G G   + L+  M   G  + ++ FTY   LKAC  S C    L+ GK++HA  ++ 
Sbjct: 205 VAEGYGSGAVNLFCEMRREG--VEANEFTYATALKAC--SMC--LDLEFGKQVHAEAIKV 258

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
           G    + + + L+D+YA+ G ++ A  VF  M  +N VSW+A++  +A+ G A + L LF
Sbjct: 259 GDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLF 318

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
             M     ++  +  T+ +VL+ CA    L  G+++H   +R G +    +   LV MY+
Sbjct: 319 CRMT--GSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYS 376

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CG       VF  ++  DVVSW+++I+     G   +A ++FK M + GV P+  +  S
Sbjct: 377 KCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLAS 436

Query: 397 VLGACSHAG 405
           ++ A +  G
Sbjct: 437 LVSAATDLG 445



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 156/306 (50%), Gaps = 14/306 (4%)

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           E +E  R   G     +     Y+ +L+ C +       L  GK IH  V++ G N   H
Sbjct: 109 ETVEKKRIWRGLDFDSKGRLRQYSGMLRTCASKG----DLNEGKAIHGQVIKSGINPDSH 164

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           +  +L+++YA+ G   YA  VF ++  ++VVSW+A+I  +   G    A+ LF EM  E 
Sbjct: 165 LWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREG 224

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
            +   N  T  + L+AC+    LE GK +H   ++ G  S L V SALV +YA+CG++ L
Sbjct: 225 VE--ANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVL 282

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
            + VF  M K++ VSWN+L++ +   G   K + +F  M    ++ S  +  +VL  C++
Sbjct: 283 AERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCAN 342

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHY--ACMVDLLGRANKLEEAAKIIEDLRIE-PGPK 460
           +G +  G+++     +   I   ++ +   C+VD+  +     +A K+   +RIE P   
Sbjct: 343 SGNLRAGQIVHSLAIR---IGCELDEFISCCLVDMYSKCGLAGDALKVF--VRIEDPDVV 397

Query: 461 VWGSLL 466
            W +++
Sbjct: 398 SWSAII 403


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/587 (39%), Positives = 365/587 (62%), Gaps = 13/587 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L +C H   L     VH ++  +G++ D      LIN+Y+   ++  ++ V
Sbjct: 314 PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEV 373

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F   + +    WN++       G  +E ++L++ M    T ++ D  TY  +L    + S
Sbjct: 374 FSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK---TDVKPDSVTYVMLL----SMS 426

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  GKE+H  + + G+N  + +  TL+DMYA+ G +  +  VF  M  +++++W+
Sbjct: 427 TQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWN 486

Query: 258 AMIACYARNGMAFEALELFREMI--MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
            +IA    +    E   L   MI  M +  + P+  TM+S+L  C+ LAA  QGK IHG 
Sbjct: 487 TIIASCVHS----EDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGC 542

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           I + GL+S +PV + L+ MY++CG L     VF  M  +DVV+W +LIS+ G++G G KA
Sbjct: 543 IFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKA 602

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           ++ F EM   G+ P  ++FV+++ ACSH+GLVEEG   F  M+K++ I P +EHYAC+VD
Sbjct: 603 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 662

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495
           LL R+  L++A   I  + ++P   +WG+LL +CR+  + E+AER S+R+ EL P + G 
Sbjct: 663 LLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGY 722

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           YVL++++YAA   WD+V+ +++ ++ARGL+K PG S +E++ K+Y F +  +F  QFE++
Sbjct: 723 YVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEV 782

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
           + LL  L+  M ++GY+   + VL+D+D +EK  I+ GHSE+LA+AFGL+NT  G  +++
Sbjct: 783 NKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQV 842

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+CEDCH+ TK+ISK   +E+LVRD NRFH F++G CSCGDYW
Sbjct: 843 MKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 227/448 (50%), Gaps = 20/448 (4%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I++L   G   +AL + S    I   P  +T+  ++ +C        A ++H  + D
Sbjct: 84  NSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLD 143

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF  D ++   LI++Y  F+ +D AR VF++   R +  WN+L       G   E LE+
Sbjct: 144 MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEI 203

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           Y R      G+  D +T + VL+AC     G   ++ G  IH  + + G    V +   L
Sbjct: 204 YYRFR--NLGVVPDSYTMSSVLRAC----GGLGSVEEGDIIHGLIEKIGIKKDVIVNNGL 257

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           + MY +F  ++    +F +M +++ VSW+ MI  Y++ G+  E+++LF EM+   +   P
Sbjct: 258 LSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV---NQFKP 314

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + +T+ S+LQAC  L  LE GK +H Y++  G +      + L+ MYA+CG L   Q VF
Sbjct: 315 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 374

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             M  +D VSWNS+I+ Y  +G   +A+++FK M+   V P  +++V +L   +  G + 
Sbjct: 375 SGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLH 433

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            GK L   + K      ++     +VD+  +  ++ ++ K+ E+++       W +++ S
Sbjct: 434 LGKELHCDLAKMG-FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARD-IITWNTIIAS 491

Query: 469 CRIH---CNVELAERASKRLFELEPTNA 493
           C +H   CN+ L   +  R   + P  A
Sbjct: 492 C-VHSEDCNLGLRMISRMRTEGVTPDMA 518



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 169/317 (53%), Gaps = 10/317 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD-KTRRRTIYVWNALFRALTLAG 160
           +HS +   G         KLI  Y+HF     +  VF   +    +Y+WN++ RALT  G
Sbjct: 35  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNG 94

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
              E L LY         ++ D +T+  V+ AC     G    +  K IH  VL  G+  
Sbjct: 95  LFSEALSLYSETQRIR--LQPDTYTFPSVINACA----GLLDFEMAKSIHDRVLDMGFGS 148

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            ++I   LIDMY RF  +  A  VF +M +++VVSW+++I+ Y  NG   EALE++    
Sbjct: 149 DLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRF- 207

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
             +  + P+S TM SVL+AC  L ++E+G +IHG I + G+   + V + L++MY +   
Sbjct: 208 -RNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNG 266

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L  G+ +FD M  RD VSWN++I  Y   G   ++I++F EM+ +   P  ++  S+L A
Sbjct: 267 LIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQA 325

Query: 401 CSHAGLVEEGKMLFESM 417
           C H G +E GK + + M
Sbjct: 326 CGHLGDLEFGKYVHDYM 342



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 108/207 (52%), Gaps = 3/207 (1%)

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA-VKNVVSWSAMIACYARN 266
           ++H+ ++  G +  V     LI  YA F     +  VF   +   NV  W+++I     N
Sbjct: 34  KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHN 93

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           G+  EAL L+ E   +   L P++ T  SV+ ACA L   E  K IH  +L  G  S L 
Sbjct: 94  GLFSEALSLYSET--QRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLY 151

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           + +AL+ MY R   L+  + VF+ M  RDVVSWNSLIS Y  +GY  +A++I+      G
Sbjct: 152 IGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG 211

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKML 413
           V P   +  SVL AC   G VEEG ++
Sbjct: 212 VVPDSYTMSSVLRACGGLGSVEEGDII 238


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/615 (37%), Positives = 376/615 (61%), Gaps = 13/615 (2%)

Query: 53  NELIQSLCKQG----NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    ++G    +++  L+++     P+  T   LL +C         +  HS++  
Sbjct: 215 NSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLA 274

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   D F++T L+++YS+      A  VFD    R++  WNA+       G   E   L
Sbjct: 275 LGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYAL 334

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +RR+  +G+G   D  T   +++ C  +S     L++G+ +H+ ++R      + + T +
Sbjct: 335 FRRLVQSGSGF--DSGTLVSLIRGCSQTS----DLENGRILHSCIIRKELESHLVLSTAI 388

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +DMY++ G +  A  VF +M  KNV++W+AM+   ++NG A +AL+LF +M  +   +  
Sbjct: 389 VDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQM--QEEKVAA 446

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           NSVT+VS++  CA L +L +G+ +H + +R G      + SAL+ MYA+CGK+   + +F
Sbjct: 447 NSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLF 506

Query: 349 DH-MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           ++    +DV+  NS+I  YG+HG+G  A+ ++  MI   + P+  +FVS+L ACSH+GLV
Sbjct: 507 NNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLV 566

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           EEGK LF SM ++H +RP  +HYAC+VDL  RA +LEEA ++++ +  +P   V  +LL 
Sbjct: 567 EEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLS 626

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
            CR H N  +  + + RL  L+  N+G YV+L+++YA A  W+ V  ++ L+  +G++K+
Sbjct: 627 GCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKI 686

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           PG S IEV  K+Y+F + D+ HP +  ++ LL NL  E++ +GY+P T  VL D++   K
Sbjct: 687 PGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMK 746

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
            +++ GHSE+LA+AFGL++T  G  I+ITKNLR+C DCH+ TK+ISK   +EI+VRD NR
Sbjct: 747 VKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDANR 806

Query: 648 FHHFRNGVCSCGDYW 662
           FHHF NG CSC D+W
Sbjct: 807 FHHFVNGKCSCNDFW 821



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 183/363 (50%), Gaps = 21/363 (5%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
           N+L    ++H+ +  N    + FL  KLI VYS    +  AR+VFD+       V NA+ 
Sbjct: 58  NTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMI 117

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH--GKEIHA 211
                  +  EV  L+R M      I S  +T  + LKAC        LL    G EI  
Sbjct: 118 AGFLRNQQHMEVPRLFRMMGSCDIEINS--YTCMFALKACT------DLLDDEVGMEIIR 169

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
           + +R G++  +++ +++++   + G +  A  VF  M  K+VV W+++I  Y + G+ +E
Sbjct: 170 AAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWE 229

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           ++++F EMI     L P+ VTM ++L+AC      + G   H Y+L  G+ + + V+++L
Sbjct: 230 SIQMFLEMI--GGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSL 287

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           V MY+  G       VFD M  R ++SWN++IS Y  +G   ++  +F+ ++  G     
Sbjct: 288 VDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDS 347

Query: 392 ISFVSVLGACSHAGLVEEGKMLFES-MRKE---HMIRPSVEHYACMVDLLGRANKLEEAA 447
            + VS++  CS    +E G++L    +RKE   H++  +      +VD+  +   +++A 
Sbjct: 348 GTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTA-----IVDMYSKCGAIKQAT 402

Query: 448 KII 450
            + 
Sbjct: 403 IVF 405


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/607 (39%), Positives = 372/607 (61%), Gaps = 20/607 (3%)

Query: 65  LRQALDVL-SIEPNP--TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKL 121
           LR   +VL S  PNP   +     LL +C   N+L     +H+H+   G   +P ++TK 
Sbjct: 11  LRTINNVLASSTPNPRAPEQNCLALLQAC---NALPKLTQIHTHILKLGLHNNPLVLTKF 67

Query: 122 INVYSHFDSVD-DARHVFD---KTRRRTIYVWNALFRALTLAGRGEE-VLELYRRMNGTG 176
            ++ S   + D  A  +F     TR    +++N L RA    G  ++  L LY  M    
Sbjct: 68  ASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIM--LH 125

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR-F 235
             I  ++FTY +VLKAC     G  +L  G+ +H SV++ G++  +H+  T++ MY+   
Sbjct: 126 DAILPNKFTYPFVLKACA----GLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCA 181

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G +  A  VF +M   + V+WSAMI  YAR G + EA+ LFREM M   ++CP+ +TMVS
Sbjct: 182 GGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMA--EVCPDEITMVS 239

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           +L AC  L ALE GK I  YI R  +   + V +AL+ M+A+CG +     +F  M+++ 
Sbjct: 240 MLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKT 299

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           +VSW S+I    +HG G +A  +F+EM   GV+P  ++F+ +L ACSH+GLVE G+  F 
Sbjct: 300 IVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFG 359

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
           SM K++ + P +EHY CMVD+  R   ++EA + + ++ IEP P +  +L+ +CR H   
Sbjct: 360 SMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEF 419

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           +L E+ +K L + EP +  NYVLL+++YA    W++  +++ ++E +G++KVPG + IE+
Sbjct: 420 KLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEI 479

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
             ++Y FV+ D+ H Q ++++ ++  +  EMK+ GY P T  VL D++ E+KE  +  HS
Sbjct: 480 DNEIYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHS 539

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EKLA+AFGL+ T  G  IRI KNLR+C DCHS +KFISK  ++EI++RD NRFHHF++G 
Sbjct: 540 EKLAIAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQ 599

Query: 656 CSCGDYW 662
           CSCGD+W
Sbjct: 600 CSCGDFW 606


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/587 (39%), Positives = 365/587 (62%), Gaps = 13/587 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L +C H   L     VH ++  +G++ D      LIN+Y+   ++  ++ V
Sbjct: 373 PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEV 432

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F   + +    WN++       G  +E ++L++ M    T ++ D  TY  +L    + S
Sbjct: 433 FSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK---TDVKPDSVTYVMLL----SMS 485

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  GKE+H  + + G+N  + +  TL+DMYA+ G +  +  VF  M  +++++W+
Sbjct: 486 TQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWN 545

Query: 258 AMIACYARNGMAFEALELFREMI--MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
            +IA    +    E   L   MI  M +  + P+  TM+S+L  C+ LAA  QGK IHG 
Sbjct: 546 TIIASCVHS----EDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGC 601

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           I + GL+S +PV + L+ MY++CG L     VF  M  +DVV+W +LIS+ G++G G KA
Sbjct: 602 IFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKA 661

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           ++ F EM   G+ P  ++FV+++ ACSH+GLVEEG   F  M+K++ I P +EHYAC+VD
Sbjct: 662 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 721

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495
           LL R+  L++A   I  + ++P   +WG+LL +CR+  + E+A+R S+R+ EL P + G 
Sbjct: 722 LLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGY 781

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           YVL+++VYAA   WD+V+ +++ ++ARGL+K PG S +E++ K+Y F +  +F  QFE++
Sbjct: 782 YVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEV 841

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
           + LL  L+  M ++GY+   + VL+D+D +EK  I+ GHSE+LA+AFGL+NT  G  +++
Sbjct: 842 NKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQV 901

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+CEDCH+ TK+ISK   +E+LVRD NRFH F++G CSCGDYW
Sbjct: 902 MKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 226/448 (50%), Gaps = 20/448 (4%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I++L   G   +AL + S    I   P  +T+  ++ +C        A ++H  +  
Sbjct: 143 NSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLX 202

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF  D ++   LI++Y  F+ +D AR VF++   R +  WN+L       G   E LE+
Sbjct: 203 MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEI 262

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           Y R      G+  D +T + VL+AC     G   ++ G  IH  + + G    V +   L
Sbjct: 263 YYRFR--NLGVVPDSYTMSSVLRAC----GGLGSVEEGDIIHGLIEKIGIKKDVIVNNGL 316

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           + MY +F  ++    +F +M +++ VSW+ MI  Y++ G+  E+++LF EM+   +   P
Sbjct: 317 LSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV---NQFKP 373

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + +T+ S+LQAC  L  LE GK +H Y++  G +      + L+ MYA+CG L   Q VF
Sbjct: 374 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 433

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             M  +D VSWNS+I+ Y  +G   +A+++FK M+   V P  +++V +L   +  G + 
Sbjct: 434 SGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLX 492

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            GK L   + K      ++     +VD+  +  ++ ++ K+ E+++       W +++ S
Sbjct: 493 LGKELHCDLAKMG-FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARD-IITWNTIIAS 550

Query: 469 CRIH---CNVELAERASKRLFELEPTNA 493
           C +H   CN+ L   +  R   + P  A
Sbjct: 551 C-VHSEDCNLGLRMISRMRTEGVTPDMA 577



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 168/317 (52%), Gaps = 10/317 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD-KTRRRTIYVWNALFRALTLAG 160
           +HS +   G         KLI  Y+HF     +  VF   +    +Y WN++ RALT  G
Sbjct: 94  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNG 153

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
              E L LY         ++ D +T+  V+ AC     G    +  K IH  VL  G+  
Sbjct: 154 LFSEALSLYSETQRIR--LQPDTYTFPSVINACA----GLLDFEMAKSIHDRVLXMGFGS 207

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            ++I   LIDMY RF  +  A  VF +M +++VVSW+++I+ Y  NG   EALE++    
Sbjct: 208 DLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRF- 266

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
             +  + P+S TM SVL+AC  L ++E+G +IHG I + G+   + V + L++MY +   
Sbjct: 267 -RNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNG 325

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L  G+ +FD M  RD VSWN++I  Y   G   ++I++F EM+ +   P  ++  S+L A
Sbjct: 326 LIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQA 384

Query: 401 CSHAGLVEEGKMLFESM 417
           C H G +E GK + + M
Sbjct: 385 CGHLGDLEFGKYVHDYM 401



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 108/207 (52%), Gaps = 3/207 (1%)

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA-VKNVVSWSAMIACYARN 266
           ++H+ ++  G +  V     LI  YA F     +  VF   +   NV  W+++I     N
Sbjct: 93  KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHN 152

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           G+  EAL L+ E   +   L P++ T  SV+ ACA L   E  K IH  +L  G  S L 
Sbjct: 153 GLFSEALSLYSET--QRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLY 210

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           + +AL+ MY R   L+  + VF+ M  RDVVSWNSLIS Y  +GY  +A++I+      G
Sbjct: 211 IGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG 270

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKML 413
           V P   +  SVL AC   G VEEG ++
Sbjct: 271 VVPDSYTMSSVLRACGGLGSVEEGDII 297


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/661 (36%), Positives = 389/661 (58%), Gaps = 53/661 (8%)

Query: 46  SLSSRNK---NELIQSLCKQGNLRQALDVL-----SIEPNPTQHTYELLLLSCTHHNSLS 97
           SL +R++   N +I +  + G+   AL +       ++PN T  TY  ++   +    L 
Sbjct: 167 SLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNST--TYINVISGFSTPEVLP 224

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALT 157
           +   +H+ +  NGFD D  + T LIN+Y    S  +AR VFDK ++R +  WN +     
Sbjct: 225 EGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV 284

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
           L G   E LELY++++  G   +  + T+  +L AC +       L  G+ +H+ +L  G
Sbjct: 285 LNGDFHEALELYQKLDMEG--FKRTKATFVSILGACSS----VKALAQGRLVHSHILERG 338

Query: 218 YNGIVHIMTTLIDMYARFGCVMYA-------------------------GF--------- 243
            +  V + T L++MYA+ G +  A                         G+         
Sbjct: 339 LDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARK 398

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF ++  ++ +SW+AMI  Y +NG A  A+++FREM   +  L P++VT ++VL+ACA+L
Sbjct: 399 VFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAA-GLKPDAVTFIAVLEACASL 457

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
             L + K +H  I    L+S + V + L+ MYARCG LE  + +F    ++ VVSW +++
Sbjct: 458 GRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMV 517

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           +++  +G   +A+ +F+EM   GV P  +++ S+L  C+H G +E+G   F  M + H +
Sbjct: 518 AAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHAL 577

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
            P+ +H+A MVDLLGR+ +L +A +++E +  EP P  W + L +CRIH  +EL E A++
Sbjct: 578 APTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAE 637

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
           R++EL+P++   Y+ ++++YAA  MW++V  V++ +E RGL+K+PG S IEV  K++ F 
Sbjct: 638 RVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFS 697

Query: 544 SVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFG 603
           S  ++HP+ +++   L  L   M+  GYVP TK VL+D+   EKE ++L HSEK+A+AFG
Sbjct: 698 SGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFG 757

Query: 604 LINT-SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF-RNGVCSCGDY 661
           L+++   GE IR+ KNLR+C DCH+ TKFI++ A ++I+VRD NRFH F  +G CSCGDY
Sbjct: 758 LVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDY 817

Query: 662 W 662
           W
Sbjct: 818 W 818



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 158/562 (28%), Positives = 266/562 (47%), Gaps = 38/562 (6%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           ++  P   T+  +L SC+    + +   +H  +  + F++D  +   LI++Y   DS+ D
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 134 ARHVFDKT--RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
           AR VF+    R+R +  WNA+  A    G   E L LY RMN  G G  +D  T+  VL 
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLG--TDHVTFVSVLG 118

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           AC       S L  G+EIH  V   G +    +   L+ MYARFG V  A  +F  +  +
Sbjct: 119 AC-------SSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR 171

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +  SW+A+I  ++++G    AL +F+EM     D+ PNS T ++V+   +    L +G+ 
Sbjct: 172 DETSWNAVILAHSQSGDWSGALRIFKEM---KCDVKPNSTTYINVISGFSTPEVLPEGRK 228

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           IH  I+  G D+ L V +AL+ MY +CG     + VFD M KRD+VSWN +I  Y ++G 
Sbjct: 229 IHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGD 288

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             +A+++++++   G   +  +FVS+LGACS    + +G+ L  S   E  +   V    
Sbjct: 289 FHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGR-LVHSHILERGLDSEVAVAT 347

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
            +V++  +   LEEA K+   ++       W +L+G+   +   + A +A K    L   
Sbjct: 348 ALVNMYAKCGSLEEARKVFNAMKNRDAV-AWSTLIGAYASNGYGKDARKARKVFDRLGSR 406

Query: 492 NAGNYVLLADVY-----AAADMWDEVKRVKRLLEARGLQ--KVPGRSRIEVKRKMYSFVS 544
           +  ++  +   Y     A A M    K  + +  A GL+   V   + +E    +     
Sbjct: 407 DTISWNAMITTYVQNGCAVAAM----KIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL--DAEEKERIVLGHSEKLAVAF 602
           V   H Q  +         +E++    V  T + +Y      EE ER+     EK  V++
Sbjct: 463 VKALHAQISE---------SELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSW 513

Query: 603 GLINTSKGETIRITKNLRLCED 624
             +  +  +  R  + L L ++
Sbjct: 514 TAMVAAFSQYGRYAEALDLFQE 535



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 135/440 (30%), Positives = 228/440 (51%), Gaps = 58/440 (13%)

Query: 53  NELIQSLCKQGNLRQALDV---LSIEPNPTQH-TYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I +  + G+  +AL +   ++++   T H T+  +L +C+   SL+    +H+ +  
Sbjct: 79  NAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREIHNRVFY 135

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +G D    L   L+ +Y+ F SV DA+ +F   + R    WNA+  A + +G     L +
Sbjct: 136 SGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRI 195

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS---LLKHGKEIHASVLRHGYNGIVHIM 225
           ++ M      ++ +  TY  V+        GFS   +L  G++IHA ++ +G++  + + 
Sbjct: 196 FKEMK---CDVKPNSTTYINVIS-------GFSTPEVLPEGRKIHAEIVANGFDTDLVVA 245

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           T LI+MY + G    A  VF +M  +++VSW+ MI CY  NG   EALEL++++ ME   
Sbjct: 246 TALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFK 305

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
                 T VS+L AC+++ AL QG+++H +IL RGLDS + V +ALV MYA+CG LE  +
Sbjct: 306 --RTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEAR 363

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGK------------------------------- 374
            VF+ M  RD V+W++LI +Y  +GYG                                 
Sbjct: 364 KVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGC 423

Query: 375 ---AIQIFKEMI-YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
              A++IF+EM    G+ P  ++F++VL AC+  G + E K L   +  E  +  +V   
Sbjct: 424 AVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQI-SESELESNVVVT 482

Query: 431 ACMVDLLGRANKLEEAAKII 450
             ++++  R   LEEA ++ 
Sbjct: 483 NTLINMYARCGSLEEAERLF 502


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/614 (38%), Positives = 369/614 (60%), Gaps = 12/614 (1%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++    K G+  +A ++      +   P + ++  +L  C    +L+    VH+   +
Sbjct: 228 NVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMN 287

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   D  + T LI +Y+   S++ AR VFD  + R +  W  +       G  E+   L
Sbjct: 288 AGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGL 347

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M   G  I+ DR TY +++ AC  S+     L H +EIH+ V   G+   + + T L
Sbjct: 348 FATMQEEG--IQPDRITYMHIMNACAISAN----LNHAREIHSQVDIAGFGTDLLVSTAL 401

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           + MYA+ G +  A  VF  M  ++VVSWSAMI  Y  NG   EA E F   +M+  ++ P
Sbjct: 402 VHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFH--LMKRSNIEP 459

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + VT +++L AC  L AL+ G  I+   ++  L S +P+ +AL+ M A+ G +E  + +F
Sbjct: 460 DGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIF 519

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M +RDV++WN++I  Y +HG   +A+ +F  M+     P+ ++FV VL ACS AG V+
Sbjct: 520 DTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVD 579

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG+  F  + +   I P+V+ Y CMVDLLGRA +L+EA  +I+ + ++P   +W SLL +
Sbjct: 580 EGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVA 639

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH N+++AERA++R   ++P +   YV L+ +YAAA MW+ V +V++++E+RG++K  
Sbjct: 640 CRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQ 699

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G + IEV  K+++FV  D  HP   +++A L  L   +K +GY+P T+ VL+D+  ++KE
Sbjct: 700 GCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKE 759

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSEKLA+A+G+++   G  IRI KNLR+C DCHS +KFISK   +EI+ RD +RF
Sbjct: 760 EAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRF 819

Query: 649 HHFRNGVCSCGDYW 662
           HHF++GVCSCGDYW
Sbjct: 820 HHFKDGVCSCGDYW 833



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 171/350 (48%), Gaps = 20/350 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N+++Q L + GN            +    TY  L   CT     +    V  H+   G  
Sbjct: 42  NDVLQRLGEGGN------------HIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQ 89

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            + + +  LI +YS   +V +AR +FD    +T+  WNAL       G  +E   L+R+M
Sbjct: 90  LNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQM 149

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                G+     T+  VL AC +S  G   L  GKE+HA V+  G+     I T L+ MY
Sbjct: 150 --VDEGLEPSIITFLSVLDAC-SSPAG---LNWGKEVHAQVVTAGFVSDFRIGTALVSMY 203

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
            + G +  A  VF  + +++V +++ M+  YA++G   +A ELF    M+   L PN ++
Sbjct: 204 VKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYR--MQQVGLKPNKIS 261

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
            +S+L  C    AL  GK +H   +  GL   + V ++L+ MY  CG +E  + VFD+M 
Sbjct: 262 FLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMK 321

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
            RDVVSW  +I  Y  +G    A  +F  M   G+ P  I+++ ++ AC+
Sbjct: 322 VRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACA 371



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 153/306 (50%), Gaps = 35/306 (11%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK++   +++ G    ++ + TLI +Y+  G V  A  +F  +  K VV+W+A+IA YA+
Sbjct: 76  GKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQ 135

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G   EA  LFR+M+ E   L P+ +T +SVL AC++ A L  GK +H  ++  G  S  
Sbjct: 136 VGHVKEAFALFRQMVDEG--LEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDF 193

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            + +ALV+MY + G ++  + VFD +  RDV ++N ++  Y   G   KA ++F  M   
Sbjct: 194 RIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQV 253

Query: 386 GVSPSPISFVSVLGA----------------CSHAGLVEEGKML------------FESM 417
           G+ P+ ISF+S+L                  C +AGLV++ ++              E  
Sbjct: 254 GLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGA 313

Query: 418 RK--EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR---IEPGPKVWGSLLGSCRIH 472
           R+  ++M    V  +  M++       +E+A  +   ++   I+P    +  ++ +C I 
Sbjct: 314 RRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAIS 373

Query: 473 CNVELA 478
            N+  A
Sbjct: 374 ANLNHA 379



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 87/167 (52%), Gaps = 1/167 (0%)

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +S T V + Q C  L     GK +  +I++ G    +  ++ L+ +Y+ CG +   + +F
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D ++ + VV+WN+LI+ Y   G+  +A  +F++M+  G+ PS I+F+SVL ACS    + 
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLN 175

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
            GK +   +     +         +V +  +   +++A ++ + L I
Sbjct: 176 WGKEVHAQVVTAGFV-SDFRIGTALVSMYVKGGSMDDARQVFDGLHI 221


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/621 (39%), Positives = 367/621 (59%), Gaps = 44/621 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH---------- 127
           P  + +  +L SCT    L    +VH  +   G D D +    L+N+Y+           
Sbjct: 103 PDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISV 162

Query: 128 ---FD-----------------------SVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
              FD                        +D  R VF+   R+ +  +N +      +G 
Sbjct: 163 GNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGM 222

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            E+ L + R M GT T ++ D FT + VL      S    ++K GKEIH  V+R G +  
Sbjct: 223 YEDALRMVREM-GT-TDLKPDSFTLSSVLPIF---SEYVDVIK-GKEIHGYVIRKGIDSD 276

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V+I ++L+DMYA+   +  +  VFS++  ++ +SW++++A Y +NG   EAL LFR+M+ 
Sbjct: 277 VYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMV- 335

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
            +  + P +V   SV+ ACA LA L  GK +HGY+LR G  S + + SALV MY++CG +
Sbjct: 336 -TAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNI 394

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           +  + +FD M+  D VSW ++I  + +HG+G +A+ +F+EM   GV P+ ++FV+VL AC
Sbjct: 395 KAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTAC 454

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SH GLV+E    F SM K + +   +EHYA + DLLGRA KLEEA   I  + +EP   V
Sbjct: 455 SHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSV 514

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W +LL SC +H N+ELAE+ ++++F ++  N G YVL+ ++YA+   W E+ +++  +  
Sbjct: 515 WSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRK 574

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           +GL+K P  S IE+K K + FVS D  HP  ++++  L  +  +M+++GYV  T  VL+D
Sbjct: 575 KGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHD 634

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           +D E K  ++ GHSE+LAVAFG+INT  G TIR+TKN+R+C DCH   KFISK   +EI+
Sbjct: 635 VDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREII 694

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           VRD +RFHHF  G CSCGDYW
Sbjct: 695 VRDNSRFHHFNRGNCSCGDYW 715



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 184/371 (49%), Gaps = 45/371 (12%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           +I++Y++   + +A  +F   +   +  W ++ R  T      + L  +  M  +G    
Sbjct: 45  VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRC-- 102

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF----- 235
            D   +  VLK+C         L+ G+ +H  ++R G +  ++    L++MYA+      
Sbjct: 103 PDHNVFPSVLKSCTM----MMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGS 158

Query: 236 --------------------------GCVMYAGF-----VFSQMAVKNVVSWSAMIACYA 264
                                      C+M  G      VF  M  K+VVS++ +IA YA
Sbjct: 159 KISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYA 218

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           ++GM  +AL + RE  M + DL P+S T+ SVL   +    + +GK IHGY++R+G+DS 
Sbjct: 219 QSGMYEDALRMVRE--MGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSD 276

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + + S+LV MYA+  ++E  + VF  +  RD +SWNSL++ Y  +G   +A+++F++M+ 
Sbjct: 277 VYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVT 336

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
             V P  ++F SV+ AC+H   +  GK L   + +      ++   + +VD+  +   ++
Sbjct: 337 AKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGG-FGSNIFIASALVDMYSKCGNIK 395

Query: 445 EAAKIIEDLRI 455
            A KI + + +
Sbjct: 396 AARKIFDRMNV 406



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 152/315 (48%), Gaps = 10/315 (3%)

Query: 57  QSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPF 116
           QS   +  LR   ++ + +  P   T   +L   + +  +     +H ++   G D D +
Sbjct: 219 QSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVY 278

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           + + L+++Y+    ++D+  VF +   R    WN+L       GR  E L L+R+M    
Sbjct: 279 IGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQM--VT 336

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
             ++     ++ V+ AC       + L  GK++H  VLR G+   + I + L+DMY++ G
Sbjct: 337 AKVKPGAVAFSSVIPACAH----LATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCG 392

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            +  A  +F +M V + VSW+A+I  +A +G   EA+ LF E  M+   + PN V  V+V
Sbjct: 393 NIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEE--MKRQGVKPNQVAFVAV 450

Query: 297 LQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           L AC+ +  +++       + +  GL+  L   +A+  +  R GKLE        M    
Sbjct: 451 LTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEP 510

Query: 356 VVS-WNSLISSYGVH 369
             S W++L+SS  VH
Sbjct: 511 TGSVWSTLLSSCSVH 525



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 134/300 (44%), Gaps = 43/300 (14%)

Query: 205 HGKEIHASVLRHGYNGIVHIMTTL-IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
             K++HA  +R     + H   ++ I +Y     +  A  +F  +    V++W ++I C+
Sbjct: 23  QAKQLHAQFIR--TQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCF 80

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
               +  +AL  F EM   +   CP+     SVL++C  +  L  G+ +HG+I+R G+D 
Sbjct: 81  TDQSLFSKALASFVEM--RASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDC 138

Query: 324 ILPVVSALVTMYARC----GKLELGQC--------------------------------V 347
            L   +AL+ MYA+      K+ +G                                  V
Sbjct: 139 DLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRV 198

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F+ M ++DVVS+N++I+ Y   G    A+++ +EM    + P   +  SVL   S    V
Sbjct: 199 FEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDV 258

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
            +GK +   + ++  I   V   + +VD+  ++ ++E++ ++   L    G   W SL+ 
Sbjct: 259 IKGKEIHGYVIRKG-IDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS-WNSLVA 316



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 95/215 (44%), Gaps = 12/215 (5%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+    + G   +AL     +++ +  P    +  ++ +C H  +L     +H ++  
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF  + F+ + L+++YS   ++  AR +FD+        W A+     L G G E + L
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTT 227
           +  M     G++ ++  +  VL AC  S  G  L+        S+ + +G N  +     
Sbjct: 432 FEEMK--RQGVKPNQVAFVAVLTAC--SHVG--LVDEAWGYFNSMTKVYGLNQELEHYAA 485

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMIA 261
           + D+  R G +  A    S+M V+   S WS +++
Sbjct: 486 VADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLS 520


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/598 (41%), Positives = 356/598 (59%), Gaps = 26/598 (4%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH----- 127
           S E +   H   L LL+     SL      H+ +   G  QD ++   L+  Y++     
Sbjct: 45  STETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNR 104

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
           + S + +  VFD  R+  +++WN + +         + + LY  M       R +++TY 
Sbjct: 105 YLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEM--MVAHFRPNKYTYP 162

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
            VLKAC  S  G  ++  G ++HA +++HG  G  HI+++ I MYA FG ++ A  +   
Sbjct: 163 AVLKAC--SDAG--VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD 218

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
              +        +    R G   EALE+F +M  E   + P    + SVL ACA L AL+
Sbjct: 219 KGGE-----VDAVCMPDRKGCFMEALEIFHQMQKEK--IRPRKFVLPSVLSACANLGALD 271

Query: 308 QGKMIHGYILRRG--LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           QG+ IH Y  R    LD +L   ++LV MYA+CG+++L   VF+ M  ++V SWN++I  
Sbjct: 272 QGRWIHTYAKRNSIQLDGVLG--TSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGG 329

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
             +HG    AI +F +M    ++P+ I+FV VL AC+H GLV++G  +F SMRKE+ + P
Sbjct: 330 LAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEP 386

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
            +EHY C+VDLLGRA  L EA K++  +  EP P VWG+LLG+CR H NVEL ER  K L
Sbjct: 387 QIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKIL 446

Query: 486 FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR-KMYSFVS 544
            ELEP N+G Y LL+++YA A  W+EV  V++L++ RG++  PG S I++ R +++ F+ 
Sbjct: 447 LELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFII 506

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604
            D  HPQ + ++ +L  +   ++ +GY P    VL+D+D EEKE  V  HSEKLA+ FGL
Sbjct: 507 GDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGL 566

Query: 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           INTS G TIRI KNLR+CEDCHS TK IS+  N+EI+VRD  R+HHFRNG CSC D+W
Sbjct: 567 INTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/553 (41%), Positives = 342/553 (61%), Gaps = 8/553 (1%)

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           GF    +++T L  +YS    ++ AR +F +  +  +  +NA+    T     E  + L+
Sbjct: 237 GFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLF 296

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           + +  +G  + S            +     F  L   + IH    + G      + T L 
Sbjct: 297 KELLVSGEKVNSSSIV------GLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALT 350

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
            +Y+R   +  A  +F + + K++ SW+AMI+ YA+NG+  +A+ LF+EM  +  ++ PN
Sbjct: 351 TVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEM--QKCEVRPN 408

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
            VT+ S+L ACA L AL  GK +H  I R   +S + V +AL+ MYA+CG +   Q +F 
Sbjct: 409 PVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFS 468

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
            M +++ V+WN++IS YG+HGYG +A+ +F EM++  VSP+ ++F+SVL ACSHAGLV E
Sbjct: 469 MMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVRE 528

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           G  +F SM  +H   P  EHYACMVDLLGRA  L++A   I  + +EPGP VWG+LLG+C
Sbjct: 529 GDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGAC 588

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
            IH +  LA  AS +LFEL+P N G YVLL+++Y+A   + E   V+ +++ R L K PG
Sbjct: 589 MIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPG 648

Query: 530 RSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKER 589
            + IEV   ++ F S D+ HPQ   ++A+L  L+ +M+E G+  +T   L+D++ EEKE 
Sbjct: 649 CTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKEL 708

Query: 590 IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
           +V  HSEKLA+AFGLI +  G  IRI KNLR+C DCH+ TKFISK   + I+VRD NRFH
Sbjct: 709 MVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFH 768

Query: 650 HFRNGVCSCGDYW 662
           HF++G+CSCGDYW
Sbjct: 769 HFKDGICSCGDYW 781



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 150/317 (47%), Gaps = 10/317 (3%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T  L L      ++L      H+ +  NG   D   VTKL +  SH  ++D A  +F   
Sbjct: 9   TRNLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTI 68

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
               ++++N L RA +L       + LY  +  + T +  D FTY +V+    +      
Sbjct: 69  PNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKS-TPLEPDNFTYAFVISGASSLG---- 123

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
               G  +HA  +  G+   + + + ++  Y +F  V  A  VF  M  ++ V W+ M++
Sbjct: 124 ---LGLLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVS 180

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
              +N    EA+ +F +M+     +  +S T+ +VL   A L  L  G  I    ++ G 
Sbjct: 181 GLVKNSCFDEAILIFGDMV--KGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGF 238

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
            S   V++ L  +Y++CG++E  + +F  + + D+VS+N++IS Y  +     ++++FKE
Sbjct: 239 HSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKE 298

Query: 382 MIYHGVSPSPISFVSVL 398
           ++  G   +  S V ++
Sbjct: 299 LLVSGEKVNSSSIVGLI 315



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 17/219 (7%)

Query: 53  NELIQSLCKQG------NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I    + G      +L Q +    + PNP   T   +L +C    +LS    VH  +
Sbjct: 378 NAMISGYAQNGLTEKAISLFQEMQKCEVRPNPV--TVTSILSACAQLGALSLGKWVHDLI 435

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
               F+ + F+ T LI++Y+   S+ +A+ +F     +    WNA+     L G G E L
Sbjct: 436 NRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEAL 495

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIM 225
            L+  M    + +     T+  VL AC  S  G  L++ G EI  S++  HG+  +    
Sbjct: 496 NLFNEM--LHSRVSPTGVTFLSVLYAC--SHAG--LVREGDEIFRSMVHDHGFEPLPEHY 549

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-AC 262
             ++D+  R G +  A     +M V+     W A++ AC
Sbjct: 550 ACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGAC 588


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/617 (38%), Positives = 354/617 (57%), Gaps = 39/617 (6%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           N  + T+  +LL  +    +     +H  +   GF    F+ + L+++Y+    V  A  
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQ 194

Query: 137 VFDKTRRRTIYV-------------------------------WNALFRALTLAGRGEEV 165
           VFD+ + R + +                               W  +   L   G   E 
Sbjct: 195 VFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEA 254

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           ++L+R M   G  +  D++T+  VL AC     G   LK GKEIH  ++R GYN  V + 
Sbjct: 255 MDLFRDMRQEGMAM--DQYTFGSVLTAC----GGLRALKEGKEIHTLIIRSGYNHNVFVG 308

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           + L+DMY +   V YA  VF +MA KNVVSW+AM+  Y +NG + EA+ +F +M  + + 
Sbjct: 309 SALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDM--QRNG 366

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + P+  T+ SV+ +CA LA+LE+G   H   L  GL S + V +AL+T+Y +CG +E   
Sbjct: 367 IEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSN 426

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +FD M  RD VSW +L+S Y   G   + I +F+ M+  G+ P  ++F++VL ACS AG
Sbjct: 427 QLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAG 486

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           LVE G+  FESM K+H I P  +HY CM+DL GRA +LEEA   I  +   P    W +L
Sbjct: 487 LVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATL 546

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           L SCR++ N E+ + A++ L EL+P N   Y+LL+ +YAA   W  V +++R +  +G +
Sbjct: 547 LSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGAR 606

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K PG S I+ K K+Y F + D+  P  +Q++A L  L+ +M E+GYVP    VL+D++  
Sbjct: 607 KEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDS 666

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           EK +++  HSEKLA+AFGL+    G  IR+ KNLR+C DCH+ TK+ISK + +EILVRD 
Sbjct: 667 EKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDA 726

Query: 646 NRFHHFRNGVCSCGDYW 662
            RFH F++G CSCGD+W
Sbjct: 727 VRFHLFKDGTCSCGDFW 743



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 196/425 (46%), Gaps = 68/425 (16%)

Query: 90  CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVW 149
           C    + + A  +H  +  +  + + FL   LIN YS   ++  ARHVFDK  +   + W
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 150 NALFRALTLAGRGEEVLELYRRM-NGTGTGIRS--------------------------- 181
           N +  A + +G    + E++  M N  G    S                           
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 182 --DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
             +R T++ +L    +  C    +  G++IH  +++ G+   V + ++L+DMYA+ G V 
Sbjct: 135 NLNRITFSTMLLLVSSQGC----VDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVS 190

Query: 240 YAGFVFSQMAVKNVV-------------------------------SWSAMIACYARNGM 268
            A  VF ++  +NVV                               SW+ MI    +NG+
Sbjct: 191 VASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGL 250

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
             EA++LFR+M  E   +  +  T  SVL AC  L AL++GK IH  I+R G +  + V 
Sbjct: 251 EAEAMDLFRDMRQEG--MAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVG 308

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           SALV MY +C  +   + VF  M  ++VVSW +++  YG +G+  +A+++F +M  +G+ 
Sbjct: 309 SALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIE 368

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
           P   +  SV+ +C++   +EEG           +I   +     ++ L G+   +E++ +
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQFHCQALVSGLI-SFITVSNALITLYGKCGSIEDSNQ 427

Query: 449 IIEDL 453
           + +++
Sbjct: 428 LFDEM 432



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 143/359 (39%), Gaps = 94/359 (26%)

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
             K++H  +++   N    +   LI+ Y++ G + YA  VF +M   N  SW+ M++ Y+
Sbjct: 23  QAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYS 82

Query: 265 RNGMAFEALELFREM------------------------------IMESHDLCPNSVTMV 294
           ++G      E+F  M                              +M+   L  N +T  
Sbjct: 83  KSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFS 142

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH---- 350
           ++L   ++   ++ G+ IHG I++ G  + + V S+LV MYA+ G + +   VFD     
Sbjct: 143 TMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQER 202

Query: 351 ---------------------------MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
                                      M +RD +SW ++I+    +G   +A+ +F++M 
Sbjct: 203 NVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMR 262

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKML------------------------------ 413
             G++    +F SVL AC     ++EGK +                              
Sbjct: 263 QEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVR 322

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR---IEPGPKVWGSLLGSC 469
           +     + M   +V  +  M+   G+    EEA ++  D++   IEP     GS++ SC
Sbjct: 323 YAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSC 381


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/556 (41%), Positives = 355/556 (63%), Gaps = 11/556 (1%)

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           F  DP+  + L+++Y H     DAR  FD+       +  A+             LEL+R
Sbjct: 125 FPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFR 184

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG--KEIHASVLRHGYNGIVHIMTTL 228
            M      I SD  +      A VA S    +   G    +HA + + G+     ++ T+
Sbjct: 185 AM------IASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTM 238

Query: 229 IDMYARFGC--VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +D YA+ G   +  A  VF  M  ++VVSW++MIA YA+NGM+ EA+ L+ +M+     +
Sbjct: 239 LDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGI 297

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
             N+V + +VL ACA   A++ GK IH  ++R GL+  + V +++V MY++CG++E+   
Sbjct: 298 KCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASR 357

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
            F  + +++++SW+++I+ YG+HG G +A++IF EM   G+ P+ I+F+SVL ACSHAGL
Sbjct: 358 AFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGL 417

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           ++EG+  + +M++E  I   VEHY CMVDLLGRA  L+EA  +I++++++P   +WG+LL
Sbjct: 418 LDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALL 477

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +CRIH NVELAE + KRLFEL+ +N+G YVLL+++YA A MW +V+R++ L++ R ++K
Sbjct: 478 SACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEK 537

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S  E+K K+Y F   D+ HPQ  ++++ L  L   M+E GYVP T  VL+DLD EE
Sbjct: 538 PPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEE 597

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE  +  HSEKLAVAF L+N+     I I KNLR+C DCH+  KFI+K   +EI++RD+ 
Sbjct: 598 KESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQ 657

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF++G+CSC DYW
Sbjct: 658 RFHHFKDGLCSCRDYW 673



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 9/180 (5%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +LL+C H  ++     +H+ +   G +++ ++ T ++++YS    V+ A   F K + + 
Sbjct: 307 VLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKN 366

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           I  W+A+     + GRG+E LE++  M    +G+R +  T+  VL AC  S  G  LL  
Sbjct: 367 ILSWSAMITGYGMHGRGQEALEIFTEMK--RSGLRPNYITFISVLAAC--SHAG--LLDE 420

Query: 206 GKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-AC 262
           G+  + ++ +  G    V     ++D+  R GC+  A  +  +M VK +   W A++ AC
Sbjct: 421 GRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSAC 480


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/605 (38%), Positives = 368/605 (60%), Gaps = 12/605 (1%)

Query: 61  KQGNLRQALDVLSIEP---NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL 117
           ++G+   AL V    P    P   T+ L L +C     L    +V     D G+  D F+
Sbjct: 86  RRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFV 145

Query: 118 VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177
            + L+++Y+ + ++ DA  VFD+  RR    W+ +      AG+  + +++YRRM   G 
Sbjct: 146 CSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDG- 204

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
            ++ D      V++AC A+      ++ G  +H  +LRHG    V   T+L+DMYA+ G 
Sbjct: 205 -VKGDEVVMIGVIQACTAARN----VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGL 259

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           +  A  VF  M  +N VSWSAMI+ +A+NG + EAL LFR M  ++  + P+S  +VS L
Sbjct: 260 LDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNM--QASGIQPDSGALVSAL 317

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            AC+ +  L+ G+ +HG+I+RR  D    + +A + MY++CG L   Q +F+ +  RD++
Sbjct: 318 LACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLI 376

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
            WN++I+  G HG G  A+ +F+EM   G+ P   +F S+L A SH+GLVEEGK+ F  M
Sbjct: 377 LWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCM 436

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
                I P+ +HY C+VDLL R+  +EEA+ ++  ++ EP   +W +LL  C  +  +EL
Sbjct: 437 VNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLEL 496

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
            E  +  + EL+P + G   L++++YAA   WD+V++V++L++  G +K+PG S IE++ 
Sbjct: 497 GESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRG 556

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
             ++F+  D+ HPQ E++ + +  L  EM++ GY+P+T+ V +DL+ E KE+ +  HSEK
Sbjct: 557 TRHAFLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEK 616

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AFGL+NT  G  + I KNLR+C DCH   K+ISK A++EI+VRD  RFHHF++GVCS
Sbjct: 617 LAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCS 676

Query: 658 CGDYW 662
           C DYW
Sbjct: 677 CRDYW 681


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/662 (38%), Positives = 369/662 (55%), Gaps = 85/662 (12%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH----- 127
           S E +   H   L LL+     SL      H+ +   G  QD ++   L+  Y++     
Sbjct: 24  STETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNR 83

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
           + S + +  VFD  R+  +++WN + +         + + LY  M       R +++TY 
Sbjct: 84  YLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEM--MVAHFRPNKYTYP 141

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT-------------------- 227
            VLKAC  S  G  ++  G ++HA +++HG  G  HI+++                    
Sbjct: 142 AVLKAC--SDAG--VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD 197

Query: 228 ------------LIDMYARFGCV---------------------MYAGF----------- 243
                       +ID Y RFG V                     M +GF           
Sbjct: 198 KGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVARE 257

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
            F +M  ++ +SWSAMI  Y + G   EALE+F +M  E   + P    + SVL ACA L
Sbjct: 258 FFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEK--IRPRKFVLPSVLSACANL 315

Query: 304 AALEQGKMIHGYILRRG--LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            AL+QG+ IH Y  R    LD +L   ++LV MYA+CG+++L   VF+ M  ++V SWN+
Sbjct: 316 GALDQGRWIHTYAKRNSIQLDGVLG--TSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNA 373

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +I    +HG    AI +F +M    ++P+ I+FV VL AC+H GLV++G  +F SMRKE+
Sbjct: 374 MIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEY 430

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
            + P +EHY C+VDLLGRA  L EA K++  +  EP P VWG+LLG+CR H NVEL ER 
Sbjct: 431 GVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERV 490

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR-KMY 540
            K L ELEP N+G Y LL+++YA A  W+EV  V++L++ RG++  PG S I++ R +++
Sbjct: 491 GKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVH 550

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
            F+  D  HPQ + ++ +L  +   ++ +GY P    VL+D+D EEKE  V  HSEKLA+
Sbjct: 551 KFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAI 610

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
            FGLINTS G TIRI KNLR+CEDCHS TK IS+  N+EI+VRD  R+HHFRNG CSC D
Sbjct: 611 GFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKD 670

Query: 661 YW 662
           +W
Sbjct: 671 FW 672



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 99/219 (45%), Gaps = 15/219 (6%)

Query: 55  LIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    ++G   +AL++       +  P +     +L +C +  +L     +H++   N 
Sbjct: 273 MIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNS 332

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              D  L T L+++Y+    +D A  VF+K   + +  WNA+   L + GR E+ ++L+ 
Sbjct: 333 IQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFS 392

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLI 229
           +M+     I  +  T+  VL AC        L++ G  I  S+ + +G    +     ++
Sbjct: 393 KMD-----INPNEITFVGVLNACAHG----GLVQKGLTIFNSMRKEYGVEPQIEHYGCIV 443

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVS-WSAMIACYARNG 267
           D+  R G +  A  V S +  +   + W A++    ++G
Sbjct: 444 DLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHG 482


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/629 (37%), Positives = 385/629 (61%), Gaps = 21/629 (3%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQAL-DVLSIEPNPTQHTYELLLLSCTHHNSLSDA 99
           S++P S+    +   I  LC  G L++AL +++ + P    H Y+ LL +C    +L + 
Sbjct: 13  SSSPNSVLQTFRP--ISQLCSNGRLQEALLEMVMLGPEIGFHCYDALLNACLDKRALREG 70

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
             VH+H+    +    +L T+L+  Y   D ++DAR V D+   + +  W A+    +  
Sbjct: 71  QRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQT 130

Query: 160 GRGEEVLELYRRMNGTGTGIRSD----RFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
           G   E L ++  M      +RSD     FT+  VL +C+ +S G +L   GK+IH  +++
Sbjct: 131 GHSSEALSVFAEM------MRSDGKPNEFTFATVLTSCIRAS-GLAL---GKQIHGLIVK 180

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
             Y+  + + ++L+DMYA+ G +  A  +F  +  ++VVS +A+IA YA+ G+  EALE+
Sbjct: 181 WNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEM 240

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F+ +  +S  + PN VT  S+L A + LA L+ GK  H ++LRR L     + ++L+ MY
Sbjct: 241 FQRL--QSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMY 298

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISF 394
           ++CG L   Q +FD+M +R  +SWN+++  Y  HG G + +++F+ M     V P  ++ 
Sbjct: 299 SKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTL 358

Query: 395 VSVLGACSHAGLVEEGKMLFESM-RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           ++VL  CSH  + + G  +++ M   E+ I+P  EHY C+VD+LGRA +++EA + I+ +
Sbjct: 359 LAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRM 418

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
             +P   V GSLLG+CR+H +V++ E    RL E+EP NAGNYV+L+++YA+A  W++V 
Sbjct: 419 PSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVN 478

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
            V+ ++  + + K PGRS I+ ++ ++ F + D  HP+ E++ A +  +S +MK+ GYVP
Sbjct: 479 NVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVP 538

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
               VLYD+D E+KE+++LGHSEKLA+ FGLI T +G  IR+ KNLR+C DCH+F K  S
Sbjct: 539 DISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFS 598

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K   +E+ +RD NRFH    G+CSCGDYW
Sbjct: 599 KVFEREVSLRDKNRFHQIVKGICSCGDYW 627


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/554 (40%), Positives = 356/554 (64%), Gaps = 7/554 (1%)

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           F  D +  + L+++Y H     DAR  FD+       +  A+             L ++R
Sbjct: 120 FPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCMRNNLVYTTLSIFR 179

Query: 171 RMNGTGT-GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
            M  +G+ G+  +      +  +      G +       IHA V + G +G   +  T+I
Sbjct: 180 SMVASGSAGVVDEAAALVALSASARVPDRGIT-----GGIHALVSKIGLDGQTGVANTII 234

Query: 230 DMYARFGC-VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           D YA+ G   + A      M  ++VVSW+ MIA YA+NG++ EAL L+ +M++   D+  
Sbjct: 235 DAYAKGGGHDLGAARKLFDMMDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRC 294

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N+VT+ +VL ACA   A++ GK IH  ++R GL+  + V +++V MY++CGK+E+    F
Sbjct: 295 NAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAF 354

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             +  ++++SW+++I+ YG+HGYG +A+ +F +M   G+ P+ I+F++VL ACSHAGL+ 
Sbjct: 355 QKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLS 414

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG+  + +M+ E  I P VEHY CMVDLLGRA  L+EA  +I++++++P   +WG+LL +
Sbjct: 415 EGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSA 474

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRI+ NVELA+  ++RLFEL+ TN+G YVLL+++YA A MW EV+R++ L++ RG++K P
Sbjct: 475 CRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPP 534

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +E+K K + F   D+ HPQ+++++A L  L   + + GYVP T  VL+DLD EE+E
Sbjct: 535 GYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLDVEERE 594

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
            ++  HSEKLAVAF L+N+ +G  I + KNLR+C DCH+  K I+K   +EI++RD+ RF
Sbjct: 595 SMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRF 654

Query: 649 HHFRNGVCSCGDYW 662
           HHF++G+CSCGDYW
Sbjct: 655 HHFKDGLCSCGDYW 668



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 9/184 (4%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T   +LL+C H  ++     +H+ +   G + + ++ T ++++YS    V+ A   F K 
Sbjct: 298 TLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKI 357

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
           + + I  W+A+     + G G+E L ++  M    +G++ +  T+  VL AC  S  G  
Sbjct: 358 KGKNILSWSAMIAGYGMHGYGQEALHVFTDMR--KSGLKPNYITFITVLAAC--SHAG-- 411

Query: 202 LLKHGKEIHASV-LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAM 259
           LL  G+  + ++    G    V     ++D+  R GC+  A  +  +M VK +   W A+
Sbjct: 412 LLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGAL 471

Query: 260 I-AC 262
           + AC
Sbjct: 472 LSAC 475


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 256/662 (38%), Positives = 368/662 (55%), Gaps = 85/662 (12%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH----- 127
           S E +   H   L LL+     SL      H+ +   G  QD ++   L+  Y++     
Sbjct: 25  STETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNR 84

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
           + S + +  VFD  R+  +++WN + +         + + LY  M    +  R +++TY 
Sbjct: 85  YLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHS--RPNKYTYP 142

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT-------------------- 227
            VLKAC  S     ++  G ++HA +++HG  G  HI+++                    
Sbjct: 143 AVLKACSDSG----VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD 198

Query: 228 ------------LIDMYARFGCV---------------------MYAGF----------- 243
                       +ID Y RFG V                     M +GF           
Sbjct: 199 KGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVARE 258

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
            F +M  ++ +SWSAMI  Y + G   EALE+F +M  E   + P    + SVL ACA L
Sbjct: 259 FFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEK--IRPRKFVLPSVLSACANL 316

Query: 304 AALEQGKMIHGYILRRG--LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            AL+QG+ IH Y  R    LD +L   ++LV MYA+CG+++L   VF+ M  ++V SWN+
Sbjct: 317 GALDQGRWIHTYAKRNSIQLDGVLG--TSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNA 374

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +I    +HG    AI +F +M    + P+ I+FV VL AC+H GLV++G  +F SMRKE+
Sbjct: 375 MIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEY 431

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
            + P +EHY C+VDLLGRA  L EA K++  +  EP P VWG+LLG+CR H NVEL ER 
Sbjct: 432 GVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERV 491

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR-KMY 540
            K L ELEP N+G Y LL+++YA A  W+EV  V++L++ RG++  PG S I++ R +++
Sbjct: 492 GKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVH 551

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
            F+  D  HPQ + ++ +L  +   ++ +GY P    VL+D+D EEKE  V  HSEKLA+
Sbjct: 552 KFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAI 611

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
            FGLINTS G TIRI KNLR+CEDCHS TK IS+  N+EI+VRD  R+HHFRNG CSC D
Sbjct: 612 GFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKD 671

Query: 661 YW 662
           +W
Sbjct: 672 FW 673



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 99/219 (45%), Gaps = 15/219 (6%)

Query: 55  LIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    ++G   +AL++       +  P +     +L +C +  +L     +H++   N 
Sbjct: 274 MIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNS 333

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              D  L T L+++Y+    +D A  VF+K   + +  WNA+   L + GR E+ ++L+ 
Sbjct: 334 IQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFS 393

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLI 229
           +M+     I  +  T+  VL AC        L++ G  I  S+ + +G    +     ++
Sbjct: 394 KMD-----IYPNEITFVGVLNACAHG----GLVQKGLTIFNSMRKEYGVEPQIEHYGCIV 444

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVS-WSAMIACYARNG 267
           D+  R G +  A  V S +  +   + W A++    ++G
Sbjct: 445 DLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHG 483


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/610 (40%), Positives = 363/610 (59%), Gaps = 17/610 (2%)

Query: 61  KQGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           + G   QAL + S      I+PNP   T+  +L       ++   + VH+ +  +G D  
Sbjct: 170 QNGLNEQALKLFSQMQLEGIKPNP--FTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDST 227

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
            F+   ++N+YS    V DA+ VFD    R    WN++       G   E  EL+ RM  
Sbjct: 228 IFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRL 287

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
            G  ++  +  +  V+K C         +   K++H  V+++G +  ++I T L+  Y++
Sbjct: 288 EG--VKLTQTIFATVIKLCA----NIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSK 341

Query: 235 FGCVMYAGFVFSQM-AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
              +  A  +F  M  V+NVVSW+A+I+ Y +NG    A+ LF +M  E   + PN  T 
Sbjct: 342 CSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRRE-EGVEPNEFTF 400

Query: 294 VSVLQACAA-LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
            SVL ACAA  A++EQGK  H   ++ G  + L V SALVTMYA+ G +E    VF    
Sbjct: 401 SSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQV 460

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
            RD+VSWNS+IS Y  HG G K+++IF+EM    +    I+F+ V+ AC+HAGLV EG+ 
Sbjct: 461 DRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQR 520

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            F+ M K++ I P++EHY+CMVDL  RA  LE+A  +I  +    G  +W +LL +CR+H
Sbjct: 521 YFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVH 580

Query: 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
            NV+L E A+++L  L+P ++  YVLL+++YA A  W E  +V++L++ + ++K  G S 
Sbjct: 581 LNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSW 640

Query: 533 IEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVL 592
           IEVK K +SF++ D  HPQ ++++  L  LS  +K+ GY P TK VL+D++ E KE I+ 
Sbjct: 641 IEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILS 700

Query: 593 GHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652
            HSE+LA+AFGLI T  G  I+I KNLR+C DCH+  K ISK   ++I+VRD NRFHHF+
Sbjct: 701 QHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFK 760

Query: 653 NGVCSCGDYW 662
            G CSCGDYW
Sbjct: 761 GGSCSCGDYW 770



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 215/441 (48%), Gaps = 26/441 (5%)

Query: 43  TPTSLSSRNKNELIQSLCKQGNLRQALDV---LSIEPNPTQHTYELLLLSCTHH--NSLS 97
           TP    SRN N L+    +    ++AL++   L    +PT  +     LSC       L 
Sbjct: 52  TPQQGLSRN-NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSS----LSCVLKVCGCLF 106

Query: 98  DAL---NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           D +    VH      GF +D  + T L+++Y   +SV+D   VFD+ R + +  W +L  
Sbjct: 107 DRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLA 166

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
                G  E+ L+L+ +M     GI+ + FT+  VL    A       ++ G ++H  V+
Sbjct: 167 GYRQNGLNEQALKLFSQMQ--LEGIKPNPFTFAAVLGGLAADGA----VEKGVQVHTMVI 220

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           + G +  + +  ++++MY++   V  A  VF  M  +N VSW++MIA +  NG+  EA E
Sbjct: 221 KSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFE 280

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           LF  M +E   L        +V++ CA +  +   K +H  +++ G D  L + +AL+  
Sbjct: 281 LFYRMRLEGVKL--TQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVA 338

Query: 335 YARCGKLELGQCVFDHMDK-RDVVSWNSLISSYGVHGYGGKAIQIFKEMIY-HGVSPSPI 392
           Y++C +++    +F  M   ++VVSW ++IS Y  +G   +A+ +F +M    GV P+  
Sbjct: 339 YSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEF 398

Query: 393 SFVSVLGACSH-AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           +F SVL AC+     VE+GK  F S   +     ++   + +V +  +   +E A ++ +
Sbjct: 399 TFSSVLNACAAPTASVEQGKQ-FHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFK 457

Query: 452 DLRIEPGPKVWGSLLGSCRIH 472
             +++     W S++     H
Sbjct: 458 R-QVDRDLVSWNSMISGYAQH 477



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 154/270 (57%), Gaps = 8/270 (2%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           ++ +FD+T ++ +   N L    +   + +E L L+  +  +G+   +D  + + VLK C
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGS--PTDGSSLSCVLKVC 102

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
               C F  +  GK++H   ++ G+   V + T+L+DMY +   V     VF +M VKNV
Sbjct: 103 ---GCLFDRIV-GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNV 158

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW++++A Y +NG+  +AL+LF +M +E   + PN  T  +VL   AA  A+E+G  +H
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQMQLEG--IKPNPFTFAAVLGGLAADGAVEKGVQVH 216

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             +++ GLDS + V +++V MY++   +   + VFD M+ R+ VSWNS+I+ +  +G   
Sbjct: 217 TMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDL 276

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
           +A ++F  M   GV  +   F +V+  C++
Sbjct: 277 EAFELFYRMRLEGVKLTQTIFATVIKLCAN 306


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/585 (39%), Positives = 362/585 (61%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P +     ++ +C    ++  A  +  ++    F  D  L T +I++Y+    V+ AR +
Sbjct: 129 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 188

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+   + +  W+A+  A    G+G + L+L+R M    +G+  D+ T   +L AC    
Sbjct: 189 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMM--LSSGMLPDKITLASLLYAC---- 242

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L+ G+ IH  V + G +    +   L+DMY +   +  A F+F +M  +++V+W+
Sbjct: 243 SDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWT 302

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            MI  YA  G A E+L LF +M  E   + P+ V MV+V+ ACA L A+ + + I  YI 
Sbjct: 303 VMIGGYAECGNANESLVLFDKMREEG--VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ 360

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R+     + + +A++ M+A+CG +E  + +FD M++++V+SW+++I++YG HG G KA+ 
Sbjct: 361 RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALD 420

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F  M+  G+ P+ I+ VS+L ACSHAGLVEEG   F  M +++ +R  V+HY C+VDLL
Sbjct: 421 LFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLL 480

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA +L+EA K+IE + +E    +WG+ LG+CR H +V LAE+A+  L EL+P N G+Y+
Sbjct: 481 GRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYI 540

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++YA A  W++V + + L+  R L+K+PG + IEV  K + F   D  HP+ ++++ 
Sbjct: 541 LLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYE 600

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
           +L +L  +++  GYVP T  VL+D+D E K  I+  HSEKLA+AFGLI T +   IRI K
Sbjct: 601 MLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIK 660

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH+F K +S    + I+VRD NRFHHF+ G CSCGDYW
Sbjct: 661 NLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 203/395 (51%), Gaps = 10/395 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T   ++ +C    +L     +H  +   G D D F+   L+++Y     ++DAR +
Sbjct: 28  PDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFL 87

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FDK + R +  W  +       G+  E L L+ +M     G+  D+     V+ AC    
Sbjct: 88  FDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMR--EEGVVPDKVAMVTVVFACAK-- 143

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                +   + I   + R  +   V + T +IDMYA+ GCV  A  +F +M  KNV+SWS
Sbjct: 144 --LGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWS 201

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMIA Y  +G   +AL+LFR M+  S  + P+ +T+ S+L AC+ L  L+ G++IH  + 
Sbjct: 202 AMIAAYGYHGQGRKALDLFRMML--SSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVY 259

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + GLD    V +ALV MY +C ++E  + +FD M +RD+V+W  +I  Y   G   +++ 
Sbjct: 260 KFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLV 319

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F +M   GV P  ++ V+V+ AC+  G + + + + + ++++   +  V     M+D+ 
Sbjct: 320 LFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK-FQLDVILGTAMIDMH 378

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            +   +E A +I + +  E     W +++ +   H
Sbjct: 379 AKCGCVESAREIFDRME-EKNVISWSAMIAAYGYH 412



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 169/293 (57%), Gaps = 12/293 (4%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G R D +T  +V++AC         L+ G+ IH  V + G +    +   L+DMY +   
Sbjct: 25  GARPDNYTLPFVIRACR----DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCRE 80

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           +  A F+F +M  +++V+W+ MI  YA  G A E+L LF +M  E   + P+ V MV+V+
Sbjct: 81  IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEG--VVPDKVAMVTVV 138

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            ACA L A+ + ++I  YI R+     + + +A++ MYA+CG +E  + +FD M++++V+
Sbjct: 139 FACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVI 198

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           SW+++I++YG HG G KA+ +F+ M+  G+ P  I+  S+L ACS    ++ G+++   +
Sbjct: 199 SWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIV 258

Query: 418 RKEHMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            K  +    ++H+ C  +VD+ G+  ++E+ A+ + D   E     W  ++G 
Sbjct: 259 YKFGL---DLDHFVCAALVDMYGKCREIED-ARFLFDKMPERDLVTWTVMIGG 307


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/568 (40%), Positives = 354/568 (62%), Gaps = 12/568 (2%)

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           AL +H +   +G D + F+   +I+VY     +++ R VFD    R +  WN++      
Sbjct: 189 ALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQ 248

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G+    +E++  M  +G  +  D  T   +  A   + CG   +  G+ +H  ++R G+
Sbjct: 249 GGQVASAVEMFCGMRDSG--VSPDVLTLLSLASAI--AQCGD--ICGGRSVHCYMVRRGW 302

Query: 219 N-GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
           + G +     ++DMYA+   +  A  +F  M V++ VSW+ +I  Y +NG+A EA+ ++ 
Sbjct: 303 DVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYD 362

Query: 278 EMIMESHD-LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
            M  + H+ L P   T VSVL A + L AL+QG  +H   ++ GL+  + V + ++ +YA
Sbjct: 363 HM--QKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYA 420

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CGKL+    +F+   +R    WN++IS  GVHG+G KA+ +F +M   G+SP  ++FVS
Sbjct: 421 KCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVS 480

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           +L ACSHAGLV++G+  F  M+  + I+P  +HYACMVD+ GRA +L++A   I ++ I+
Sbjct: 481 LLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIK 540

Query: 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516
           P   +WG+LLG+CRIH NVE+ + AS+ LFEL+P N G YVL++++YA    WD V  V+
Sbjct: 541 PDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVR 600

Query: 517 RLLEARGLQKVPGRSRIEVKRKMYSFVSVDE--FHPQFEQLHALLINLSAEMKEKGYVPQ 574
            L+  + LQK PG S IEVKR +  F S ++   HPQ E++   L++L A+++  GYVP 
Sbjct: 601 SLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPD 660

Query: 575 TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
              VL D++ +EKE+I+  HSE+LA+AFG+INT     + I KNLR+C DCH+ TK+ISK
Sbjct: 661 YSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISK 720

Query: 635 FANKEILVRDVNRFHHFRNGVCSCGDYW 662
              +EI+VRD NRFHHF++G CSCGD+W
Sbjct: 721 ITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 186/362 (51%), Gaps = 14/362 (3%)

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           D F    L++ Y  F  V DA   FD+ R R +  WNA+   L    R  E + L+ RM 
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRM- 161

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
               G+  D  T + VL  CV    G   L     ++A  ++HG +  + +   +ID+Y 
Sbjct: 162 -VMEGVAGDAVTVSSVLPMCVL--LGDRALALAMHLYA--VKHGLDDELFVCNAMIDVYG 216

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G +     VF  M+ +++V+W+++I+ + + G    A+E+F    M    + P+ +T+
Sbjct: 217 KLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMF--CGMRDSGVSPDVLTL 274

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLD-SILPVVSALVTMYARCGKLELGQCVFDHMD 352
           +S+  A A    +  G+ +H Y++RRG D   +   +A+V MYA+  K+E  Q +FD M 
Sbjct: 275 LSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMP 334

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGK 411
            RD VSWN+LI+ Y  +G   +AI ++  M  H G+ P   +FVSVL A SH G +++G 
Sbjct: 335 VRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGT 394

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCR 470
            +  ++  +  +   V    C++DL  +  KL+EA  + E   R   GP  W +++    
Sbjct: 395 RM-HALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGP--WNAVISGVG 451

Query: 471 IH 472
           +H
Sbjct: 452 VH 453



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 142/286 (49%), Gaps = 11/286 (3%)

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFGCVMY 240
           D FT+  +L+A               ++HA  LR G   G       L+  Y RFG V  
Sbjct: 70  DAFTFPPLLRAAQGPGTA-------AQLHACALRLGLLRGDAFASGALVHAYLRFGRVRD 122

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A   F +M  ++V +W+AM++   RN  A EA+ LF  M+ME   +  ++VT+ SVL  C
Sbjct: 123 AYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEG--VAGDAVTVSSVLPMC 180

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
             L        +H Y ++ GLD  L V +A++ +Y + G LE  + VFD M  RD+V+WN
Sbjct: 181 VLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWN 240

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           S+IS +   G    A+++F  M   GVSP  ++ +S+  A +  G +  G+ +   M + 
Sbjct: 241 SIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRR 300

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
                 +     +VD+  + +K+E A ++ + + +      W +L+
Sbjct: 301 GWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVS-WNTLI 345



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 112/265 (42%), Gaps = 42/265 (15%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P Q T+  +L + +H  +L     +H+     G + D ++ T +I++Y+    +D+A  +
Sbjct: 372 PIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLL 431

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++T RR+   WNA+   + + G G + L L+ +M     GI  D  T+  +L AC    
Sbjct: 432 FEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQ--QEGISPDHVTFVSLLAACS--- 486

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                       HA ++  G N               F  +M   +    +A      ++
Sbjct: 487 ------------HAGLVDQGRN---------------FFNMMQTAYGIKPIAKH----YA 515

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            M+  + R G   +A +  R M ++     P+S    ++L AC     +E GK+    + 
Sbjct: 516 CMVDMFGRAGQLDDAFDFIRNMPIK-----PDSAIWGALLGACRIHGNVEMGKVASQNLF 570

Query: 318 RRGLDSILPVVSALVTMYARCGKLE 342
                ++   V  +  MYA+ GK +
Sbjct: 571 ELDPKNVGYYV-LMSNMYAKVGKWD 594


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/613 (39%), Positives = 357/613 (58%), Gaps = 13/613 (2%)

Query: 55   LIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
            +I +L + G   +AL +     N    P + T   +L +C   + L    ++H       
Sbjct: 401  IIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKAD 460

Query: 111  FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
             D D    T L+++Y+       A   F++   R I  WN+L       G     ++++ 
Sbjct: 461  MDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFY 520

Query: 171  RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            ++  +   I  D  T   V+ AC       + L  G  IH  +++ G+    H+   LID
Sbjct: 521  KLRLSA--INPDAGTMVGVVPACAL----LNDLDQGTCIHGLIVKLGFESDCHVKNALID 574

Query: 231  MYARFGCVMYAGFVFSQMA-VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
            MYA+ G +  A F+F++    K+ V+W+ +IA Y +NG A EA+  F +M +E  +  PN
Sbjct: 575  MYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLE--NFHPN 632

Query: 290  SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
            SVT VSVL A A LAA  +G   H  I++ G  S   V ++L+ MYA+CG+L+  + +F+
Sbjct: 633  SVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFN 692

Query: 350  HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
             MD +D VSWN+++S Y VHG+G +AI +F  M    V    +SFVSVL AC HAGLVEE
Sbjct: 693  EMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEE 752

Query: 410  GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
            G+ +F SM  ++ I+P +EHYACMVDLLGRA   +E    I+ + +EP   VWG+LLGSC
Sbjct: 753  GRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSC 812

Query: 470  RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
            R+H NV+L E A   L +LEP N  ++V+L+ +YA +  W +  + +  +   GL+K PG
Sbjct: 813  RMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPG 872

Query: 530  RSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKER 589
             S +E+K K+++F   D+ HPQ E +H L   L  +M++ GYVP    VL +++ E+KE 
Sbjct: 873  CSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEM 932

Query: 590  IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
             +  HSE+LA+ F L+NT  G TI+I KNLR+C DCH+ TKFISK   + I+VRD  RFH
Sbjct: 933  FLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFH 992

Query: 650  HFRNGVCSCGDYW 662
            HF +G+CSC DYW
Sbjct: 993  HFEDGICSCNDYW 1005



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/407 (30%), Positives = 209/407 (51%), Gaps = 16/407 (3%)

Query: 11  QLLRSPY-HTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNK-NELIQSLCKQGNLRQA 68
           Q++ S + H +SI HL    S    C    S    T   SR   N +I++  +     +A
Sbjct: 54  QIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEA 113

Query: 69  LDVL--SIEPN--PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           L++    +E    P ++T+  +L +CT   +L + +  H  +   G ++D F+   L+++
Sbjct: 114 LEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDM 173

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
           YS    +  AR VFDK  +R +  WNA+   L+ +    E ++ +R M   G    S   
Sbjct: 174 YSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
              +         C  S ++  + IH  V R  ++  V     LID+Y++ G V  A  V
Sbjct: 234 LNLF------PGICKLSNIELCRSIHGYVFRRDFSSAVS--NGLIDLYSKCGDVDVARRV 285

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F QM  ++ VSW  M+A YA NG   E LELF +M + +  +  N V+ VS   A A   
Sbjct: 286 FDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRI--NKVSAVSAFLAAAETI 343

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
            LE+GK IHG  L++ +DS + V + L+ MYA+CG+ E  + +F  +  RD+V+W+++I+
Sbjct: 344 DLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIA 403

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           +    GY  +A+ +F+EM    + P+ ++ +S+L AC+   L++ GK
Sbjct: 404 ALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/585 (39%), Positives = 352/585 (60%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P Q+TY  +L +CT   +L     +H+ +  +GF  + ++ + LI++Y+    +D AR +
Sbjct: 413 PNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGI 472

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
             + R   +  W A+    T      E L+L++ M   G  IRSD   ++  + AC    
Sbjct: 473 LQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQG--IRSDNIGFSSAISACA--- 527

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G   L  G++IHA     GY+  + I   L+ +YAR G    A   F ++  K+ +SW+
Sbjct: 528 -GIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWN 586

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           A+I+ +A++G   EAL++F +M      +  N  T  S + A A  A ++QGK IH  ++
Sbjct: 587 ALISGFAQSGHCEEALQVFSQM--NQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMI 644

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G DS     + L+T+Y++CG +E  +  F  M +++VVSWN++I+ Y  HGYG +A+ 
Sbjct: 645 KTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVS 704

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F+EM   G+ P+ ++FV VL ACSH GLV EG   F SM KEH + P  EHY C+VDLL
Sbjct: 705 LFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLL 764

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA  L  A + IE++ IEP   +W +LL +C +H N+E+ E A++ L ELEP ++  YV
Sbjct: 765 GRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYV 824

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++YA +  WD   R +++++ RG++K PGRS IEVK  +++F   D  HP  EQ++ 
Sbjct: 825 LLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYE 884

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            + +L+    E GYV     +L D++ E+K+     HSEKLAVAFGL++ +    IR+ K
Sbjct: 885 YIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIK 944

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH++ KF+SK +N+ I+VRD  RFHHF  GVCSC DYW
Sbjct: 945 NLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 175/333 (52%), Gaps = 7/333 (2%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
            TY  L   C +  SL DA  +H+ +  +GFD +  L ++LI++Y     VD+A  +FD 
Sbjct: 11  QTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDD 70

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
                +  WN +   L       +VL L+  M      +  D  T+  VL+AC      F
Sbjct: 71  IPSSNVSFWNKVISGLLAKKLASQVLGLFSLM--ITENVTPDESTFASVLRACSGGKAPF 128

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
            + +   +IHA ++ HG+     +   LID+Y++ G V  A  VF ++ +K+ VSW AMI
Sbjct: 129 QVTE---QIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMI 185

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           +  ++NG   EA+ LF +M      + P      SVL AC  +   + G+ +HG+I++ G
Sbjct: 186 SGLSQNGREDEAILLFCQM--HKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWG 243

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           L S   V +ALVT+Y+R G L   + +F  M +RD +S+NSLIS     G+  +A+Q+F+
Sbjct: 244 LSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFE 303

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +M    + P  ++  S+L AC+  G   +GK L
Sbjct: 304 KMQLDCMKPDCVTVASLLSACASVGAGYKGKQL 336



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 226/444 (50%), Gaps = 22/444 (4%)

Query: 53  NELIQSLCKQGNLRQALDVLSI----EPNPTQHTYELLLLSCTHHNS-LSDALNVHSHLT 107
           N++I  L  +    Q L + S+       P + T+  +L +C+   +       +H+ + 
Sbjct: 80  NKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKII 139

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            +GF   P +   LI++YS    VD A+ VF++   +    W A+   L+  GR +E + 
Sbjct: 140 HHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAIL 199

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+ +M+ +   +    + ++ VL AC        L K G+++H  +++ G +    +   
Sbjct: 200 LFCQMHKSA--VIPTPYVFSSVLSACTK----IELFKLGEQLHGFIVKWGLSSETFVCNA 253

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+ +Y+R+G ++ A  +FS+M  ++ +S++++I+  A+ G +  AL+LF +M ++   + 
Sbjct: 254 LVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDC--MK 311

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+ VT+ S+L ACA++ A  +GK +H Y+++ G+ S L +  +L+ +Y +C  +E     
Sbjct: 312 PDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEY 371

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F   +  +VV WN ++ +YG  G   ++  IF +M   G+ P+  ++ S+L  C+  G +
Sbjct: 372 FLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGAL 431

Query: 408 EEGKMLFESMRKEHMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           + G+ +   + K          Y C  ++D+  +  +L+ A  I++ LR E     W ++
Sbjct: 432 DLGEQIHTQVIKSGF---QFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAM 487

Query: 466 LGSCRIHCNVELAERASKRLFELE 489
           +     H   +L   A K   E+E
Sbjct: 488 IAGYTQH---DLFAEALKLFQEME 508



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 169/336 (50%), Gaps = 8/336 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PT + +  +L +CT          +H  +   G   + F+   L+ +YS + ++  A  +
Sbjct: 211 PTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQI 270

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F K  RR    +N+L   L   G  +  L+L+ +M      ++ D  T   +L AC +  
Sbjct: 271 FSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDC--MKPDCVTVASLLSACASVG 328

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G+     GK++H+ V++ G +  + I  +L+D+Y +   +  A   F     +NVV W+
Sbjct: 329 AGYK----GKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWN 384

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            M+  Y + G   E+  +F +M +E   L PN  T  S+L+ C +L AL+ G+ IH  ++
Sbjct: 385 VMLVAYGQLGNLSESYWIFLQMQIEG--LMPNQYTYPSILRTCTSLGALDLGEQIHTQVI 442

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G    + V S L+ MYA+ G+L+  + +   + + DVVSW ++I+ Y  H    +A++
Sbjct: 443 KSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALK 502

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +F+EM   G+    I F S + AC+    + +G+ +
Sbjct: 503 LFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQI 538



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 44/228 (19%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           ME   +  N  T + + + C    +L   K +H  I + G D    + S L+ +Y   G+
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           ++    +FD +   +V  WN +IS         + + +F  MI   V+P   +F SVL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 401 CS------------HAGLVEEG------------------------KMLFESMRKEHMIR 424
           CS            HA ++  G                        K++FE +     ++
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERL----FLK 176

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLR---IEPGPKVWGSLLGSC 469
            SV  +  M+  L +  + +EA  +   +    + P P V+ S+L +C
Sbjct: 177 DSVS-WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSAC 223


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/618 (37%), Positives = 365/618 (59%), Gaps = 41/618 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL SC    +  +   +H H+   G+D D ++ T LI++Y     ++DAR V
Sbjct: 86  PNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKV 145

Query: 138 FDKTRRRTI--------------YV-----------------WNALFRALTLAGRGEEVL 166
           FD++  R +              Y+                 WNA+       G  +E L
Sbjct: 146 FDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEAL 205

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++ M    T +R D  T   V+ AC  S+     ++ G+++H+ +  HG+   + I+ 
Sbjct: 206 ELFKEM--MKTNVRPDESTMVSVVSACAQSAS----IELGRQVHSWIDDHGFGSNLKIVN 259

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LID+Y + G V  A  +F  ++ K+V+SW+ +I  Y    +  EAL LF+EM+      
Sbjct: 260 ALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES- 318

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELG 344
            PN VTM+S+L ACA L A+E G+ IH YI +R  G+ +     ++L+ MYA+CG +E  
Sbjct: 319 -PNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAA 377

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           Q VFD +  R + SWN++I  + +HG    A  IF  M  + + P  I+FV +L ACSH+
Sbjct: 378 QQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 437

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+++ G+ +F SM++++ I P +EHY CM+DLLG +   +EA ++I  + +EP   +W S
Sbjct: 438 GMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 497

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +C++H NVEL E  ++ L ++EP N G+YVLL+++YA A  W+EV +++ LL  +G+
Sbjct: 498 LLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGM 557

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +KVPG S IE+   ++ F+  D+FHP+  +++ +L  +   ++E G+VP T  VL +++ 
Sbjct: 558 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 617

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           E KE  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH  TK ISK   +EI+ RD
Sbjct: 618 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 677

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHFR+GVCSC DYW
Sbjct: 678 RTRFHHFRDGVCSCNDYW 695



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 217/428 (50%), Gaps = 46/428 (10%)

Query: 102 VHSHLTDNGFDQDPFLVTKLIN---VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           +H+ +   G     + ++KLI    +  HFD +  A  VF+  +   + +WN +FR   L
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 65

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +      L LY  M     G+  + +T+ ++LK+C  S       + G++IH  VL+ GY
Sbjct: 66  SSDPVSALYLYVCM--ISLGLLPNCYTFPFLLKSCAKSKA----FREGQQIHGHVLKLGY 119

Query: 219 NGIVHIMTTLIDMYARFG----------------CVMYAGFV---------------FSQ 247
           +  +++ T+LI MY + G                 V Y   +               F +
Sbjct: 120 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDE 179

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           + +K+VVSW+AMI+ YA  G   EALELF+EM+    ++ P+  TMVSV+ ACA  A++E
Sbjct: 180 IPIKDVVSWNAMISGYAETGNNKEALELFKEMM--KTNVRPDESTMVSVVSACAQSASIE 237

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+ +H +I   G  S L +V+AL+ +Y +CG++E    +F+ +  +DV+SWN+LI  Y 
Sbjct: 238 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 297

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE-HMIRPS 426
                 +A+ +F+EM+  G SP+ ++ +S+L AC+H G +E G+ +   + K    +  +
Sbjct: 298 HMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANA 357

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH--CNVELAERASKR 484
             H   ++D+  +   +E A ++ + + +      W +++    +H   N      +  R
Sbjct: 358 SSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMR 416

Query: 485 LFELEPTN 492
             E+EP +
Sbjct: 417 KNEIEPDD 424



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 176/404 (43%), Gaps = 51/404 (12%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + GN ++AL++    +     P + T   ++ +C    S+     VHS + D
Sbjct: 189 NAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD 248

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GF  +  +V  LI++Y     V+ A  +F+    + +  WN L    T     +E L L
Sbjct: 249 HGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLL 308

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV---LRHGYNGIVHIM 225
           ++ M  +G     +  T   +L AC         ++ G+ IH  +   L+   N   H  
Sbjct: 309 FQEMLRSGES--PNDVTMLSILPACAH----LGAIEIGRWIHVYINKRLKGVANASSH-R 361

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           T+LIDMYA+ G +  A  VF  +  +++ SW+AMI  +A +G A  A ++F    M  ++
Sbjct: 362 TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSR--MRKNE 419

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + P+ +T V +L AC+    L+ G+    +I R           ++   Y    KLE   
Sbjct: 420 IEPDDITFVGLLSACSHSGMLDLGR----HIFR-----------SMKEDYKITPKLEHYG 464

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
           C+ D +               G  G   +A ++   M    + P  + + S+L AC   G
Sbjct: 465 CMIDLL---------------GHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACKMHG 506

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
            VE G+   +++ K     P    Y  + ++   A +  E AKI
Sbjct: 507 NVELGESYAQNLIKIEPKNPG--SYVLLSNIYATAGRWNEVAKI 548


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/562 (41%), Positives = 354/562 (62%), Gaps = 9/562 (1%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH+     G  Q   +VT LI++Y+    ++ ARH+FD+     +  +NAL    ++ G 
Sbjct: 243 VHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGM 302

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
               +EL++ +   G G+R    T   ++   V S  G   L     +HA V++ G +  
Sbjct: 303 VGSSVELFKEL--VGMGLRPSSSTLVALIP--VHSPFGHEPL--AGCLHAHVVKAGLDAN 356

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
             + T L  +Y RF  +  A   F  M  K + SW+AMI+ YA+NG+   A+ LF++M  
Sbjct: 357 APVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQM-- 414

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           ++ ++ PN +T+ S L ACA L AL  GK +H  I    L+  + V++AL+ MY +CG +
Sbjct: 415 QALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSI 474

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
              +C+FD MD ++VVSWN +IS YG+HG G +A++++K+M+   + P+  +F+SVL AC
Sbjct: 475 AEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYAC 534

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPK 460
           SH GLV+EG  +F SM  ++ I P +EH  CMVDLLGRA +L+EA ++I +  +   GP 
Sbjct: 535 SHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPG 594

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
           +WG+LLG+C +H + +LA+ AS++LFELEP N G YVLL+++Y +   + E   V++  +
Sbjct: 595 IWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAK 654

Query: 521 ARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY 580
           +R L K PG + IE+  + + F++ D  HPQ + ++  L  L+A+M E GY P T+  LY
Sbjct: 655 SRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALY 714

Query: 581 DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEI 640
           D++ EEKE +V  HSEKLA+AFGL+NT  G  IRI KNLR+C DCH+ TK ISK   + I
Sbjct: 715 DVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLI 774

Query: 641 LVRDVNRFHHFRNGVCSCGDYW 662
           +VRD +RFHHFR+GVCSCGDYW
Sbjct: 775 VVRDASRFHHFRDGVCSCGDYW 796



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 184/354 (51%), Gaps = 16/354 (4%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +H+    +GF  D F+ + L  +Y      +DAR VFD        +WN L   L+    
Sbjct: 145 LHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS---- 200

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC--VASSCGFSLLKHGKEIHASVLRHGYN 219
           G E LE + RM G G+ +R D  T   VL A   VA++        G+ +HA   + G  
Sbjct: 201 GSEALEAFVRMAGAGS-VRPDSTTLASVLPAAAEVANT------TMGRCVHAFGEKCGLA 253

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
              H++T LI +YA+ G +  A  +F +M   ++V+++A+I+ Y+ NGM   ++ELF+E+
Sbjct: 254 QHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKEL 313

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           +     L P+S T+V+++   +          +H ++++ GLD+  PV +AL T+Y R  
Sbjct: 314 V--GMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFN 371

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            ++  +  FD M ++ + SWN++IS Y  +G    A+ +F++M    V P+P++  S L 
Sbjct: 372 DMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALS 431

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           AC+  G +  GK + + +  E +   +V     ++D+  +   + EA  I + +
Sbjct: 432 ACAQLGALSLGKWVHKIIANEKL-ELNVYVMTALIDMYVKCGSIAEARCIFDSM 484



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 153/328 (46%), Gaps = 46/328 (14%)

Query: 182 DRFTYTYVLKACVASSC---GFSLLKHG----KEIHASVLRHGYNGIVHIMTTLIDMYAR 234
           D F++ +   + +ASSC   G S         + +HA  +  G+     + + L  +Y  
Sbjct: 112 DSFSFAFAATS-LASSCSRGGISPPSAASAALRPLHALAVASGFAADNFVASALAKLYFT 170

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
                 A  VF  +   + V W+ ++A  + +    EALE F  M   +  + P+S T+ 
Sbjct: 171 LSRGNDARKVFDAVPSPDTVLWNTLLAGLSGS----EALEAFVRM-AGAGSVRPDSTTLA 225

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           SVL A A +A    G+ +H +  + GL     VV+ L+++YA+CG +E  + +FD M+  
Sbjct: 226 SVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGP 285

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV-----------LGACSH 403
           D+V++N+LIS Y ++G  G ++++FKE++  G+ PS  + V++           L  C H
Sbjct: 286 DLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLH 345

Query: 404 AGLVEEG-----------KMLF------ESMRK--EHMIRPSVEHYACMVDLLGRANKLE 444
           A +V+ G             L+      +S R+  + M   ++E +  M+    +    E
Sbjct: 346 AHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTE 405

Query: 445 EAAKIIED---LRIEPGPKVWGSLLGSC 469
            A  + +    L + P P    S L +C
Sbjct: 406 MAVALFQQMQALNVRPNPLTISSALSAC 433



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 18/220 (8%)

Query: 53  NELIQSLCKQG------NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I    + G       L Q +  L++ PNP   T    L +C    +LS    VH  +
Sbjct: 392 NAMISGYAQNGLTEMAVALFQQMQALNVRPNPL--TISSALSACAQLGALSLGKWVHKII 449

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
            +   + + +++T LI++Y    S+ +AR +FD    + +  WN +     L G+G E L
Sbjct: 450 ANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEAL 509

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIM 225
           +LY+ M      +     T+  VL AC   S G  L+K G  +  S+   +G    +   
Sbjct: 510 KLYKDM--MDAHLHPTSSTFLSVLYAC---SHG-GLVKEGTTVFRSMTSDYGITPGIEHC 563

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVS--WSAMI-AC 262
           T ++D+  R G +  A  + S+     V    W A++ AC
Sbjct: 564 TCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGAC 603


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/586 (41%), Positives = 360/586 (61%), Gaps = 9/586 (1%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           NP   T   +L +C+    L     VH  +   GF+ D F+   L+ +Y+    V+ AR 
Sbjct: 166 NPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARI 225

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF+    R I  W ++       G   E L ++ +M      ++ D      VL+A    
Sbjct: 226 VFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRN--VKPDWIALVSVLRAYT-- 281

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+ GK IH  V++ G      ++ +L  MYA+ G VM A   F QM + NV+ W
Sbjct: 282 --DVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMW 339

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AMI+ YA+NG   EA+ LF+EMI  S ++  +S+T+ S + ACA + +L+  K +  YI
Sbjct: 340 NAMISGYAKNGYTNEAVGLFQEMI--SKNIRTDSITVRSAILACAQVGSLDLAKWMGDYI 397

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            +    + + V +AL+ M+A+CG ++L + VFD    +DVV W+++I  YG+HG G  AI
Sbjct: 398 NKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAI 457

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F  M   GV P+ ++FV +L AC+H+GLVEEG  LF SM K + I    +HYAC+VDL
Sbjct: 458 DLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDL 516

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGR+  L EA   I  + IEPG  VWG+LLG+C+I+ +V L E A+++LF L+P N G+Y
Sbjct: 517 LGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHY 576

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           V L+++YA++ +WD V +V+ L+  +GL K  G S IE+  K+ +F   D+ HP+F+++ 
Sbjct: 577 VQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIF 636

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L +L   +KE G++P  + VL+DL+ EEKE  +  HSE+LA+A+GLI+T+ G T+RIT
Sbjct: 637 EELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRIT 696

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR C +CHS TK ISK  N+EI+VRD NRFHHF+NGVCSC DYW
Sbjct: 697 KNLRACINCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 128/439 (29%), Positives = 226/439 (51%), Gaps = 26/439 (5%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHT---------YELLLLSCTHHN 94
           P  L +   +E   +L K  N   +L      P P  H+         ++    S   H+
Sbjct: 28  PLGLPTATASEFPATLFKFLNFYSSL------PLPLDHSDYIPYSGFDFDSFFSSLLDHS 81

Query: 95  SLSDALN-VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
                LN +H+ L  +G  +  FLVTK +N   +   +  AR VFD+    ++++WNA+ 
Sbjct: 82  VHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAII 141

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           R  +      + +E+Y RM    +G+  D FT   VLKAC     G  +L+ GK +H  +
Sbjct: 142 RGYSSHNFFGDAIEMYSRMQ--ASGVNPDGFTLPCVLKAC----SGVPVLEVGKRVHGQI 195

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
            R G+   V +   L+ +YA+ G V  A  VF  +  +N+VSW++MI+ Y +NG+  EAL
Sbjct: 196 FRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEAL 255

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
            +F +  M   ++ P+ + +VSVL+A   +  LEQGK IHG +++ GL+    ++ +L  
Sbjct: 256 RIFGQ--MRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTA 313

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MYA+CG++ + +  FD M+  +V+ WN++IS Y  +GY  +A+ +F+EMI   +    I+
Sbjct: 314 MYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSIT 373

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
             S + AC+  G ++  K + + + K    R  V     ++D+  +   ++ A ++  D 
Sbjct: 374 VRSAILACAQVGSLDLAKWMGDYINKTEY-RNDVFVNTALIDMFAKCGSVDLAREVF-DR 431

Query: 454 RIEPGPKVWGSLLGSCRIH 472
            ++    VW +++    +H
Sbjct: 432 TLDKDVVVWSAMIVGYGLH 450


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/578 (41%), Positives = 349/578 (60%), Gaps = 30/578 (5%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L+ C +  +LS    VHS    + F++       L+++YS    +D A  VF+K   R 
Sbjct: 257 VLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 316

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  W ++    T  G  +  + L ++M   G  ++ D    T +L AC  S      L +
Sbjct: 317 VVSWTSMIAGYTRDGWSDGAIILLQQMEKEG--VKLDVVAITSILHACARSGS----LDN 370

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK++H  +  +     + +   L+DMYA+ G +  A  VFS M VK+++SW+ M+     
Sbjct: 371 GKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG---- 426

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
                              +L P+S TM  +L ACA+L+ALE+GK IHGYILR G  S  
Sbjct: 427 -------------------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR 467

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +ALV +Y +CG L L + +FD +  +D+VSW  +I+ YG+HGYG +AI  F EM   
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 527

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ P  +SF+S+L ACSH+GL+E+G   F  M+ +  I P +EHYACMVDLL R   L +
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 587

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A K IE L I P   +WG+LL  CRI+ ++ELAE+ ++R+FELEP N G YVLLA++YA 
Sbjct: 588 AYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAE 647

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE-FHPQFEQLHALLINLSA 564
           A+  +EVKR++  +  +GL+K PG S IE+K ++  FVS +   HP  +++ +LL  +  
Sbjct: 648 AEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRR 707

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           +MKE+GY P+TK  L + D  +KE  + GHSEKLA+AFGL+     +TIR+TKNLR+C D
Sbjct: 708 KMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGD 767

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH   KF+SK   +EI++RD NRFHHF++G CSC  +W
Sbjct: 768 CHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 188/431 (43%), Gaps = 81/431 (18%)

Query: 35  CVSLNSSTTPTSL---SSRNKNELIQSLCKQGNLRQALDVLSI--EPNPTQHTYELLLLS 89
           C+ +  S TPT        + N  I   C+ G+L  A++++ +  +      TY  +L  
Sbjct: 49  CIPVRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELVCMCQKSELETKTYGSVLQL 108

Query: 90  CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVW 149
           C    SL+D   VHS +  N    D  L  KL++ Y+    + + R VFD   ++ +Y+W
Sbjct: 109 CAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLW 168

Query: 150 N----------------ALFRALTLAG----RGEEVLELYRRM----------------- 172
           N                 LF+ +   G    R E   EL+ ++                 
Sbjct: 169 NFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVS 228

Query: 173 -----NGTGT-------GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
                 G G        GI  D  T   VL  C  S      L  GK +H+  ++  +  
Sbjct: 229 NGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANS----GTLSLGKAVHSLAIKSSFER 284

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            ++   TL+DMY++ G +  A  VF +M  +NVVSW++MIA Y R+G +  A+ L ++M 
Sbjct: 285 RINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQME 344

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
            E   L  + V + S+L ACA   +L+ GK +H YI    + S L V +AL+ MYA+CG 
Sbjct: 345 KEGVKL--DVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGS 402

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +E    VF  M  +D++SWN+++                       + P   +   +L A
Sbjct: 403 MEGANSVFSTMVVKDIISWNTMVGE---------------------LKPDSRTMACILPA 441

Query: 401 CSHAGLVEEGK 411
           C+    +E GK
Sbjct: 442 CASLSALERGK 452



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 125/232 (53%), Gaps = 8/232 (3%)

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  +F ++  ++V+SW++MI+ Y  NG+    L ++++M+    D+  +  T++SVL  C
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV--DLATIISVLVGC 261

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           A    L  GK +H   ++   +  +   + L+ MY++CG L+    VF+ M +R+VVSW 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           S+I+ Y   G+   AI + ++M   GV    ++  S+L AC+ +G ++ GK + + ++  
Sbjct: 322 SMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 381

Query: 421 HMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           +M   +   + C  ++D+  +   +E A  +   + ++     W +++G  +
Sbjct: 382 NM---ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIIS-WNTMVGELK 429



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 11/211 (5%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E  P   T   +L +C   ++L     +H ++  NG+  D  +   L+++Y     +  A
Sbjct: 427 ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLA 486

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R +FD    + +  W  +     + G G E +  +  M     GI  D  ++  +L AC 
Sbjct: 487 RLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMR--DAGIEPDEVSFISILYACS 544

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYN--GIVHIMTTLIDMYARFGCVMYA-GFVFSQMAVK 251
            S     LL+ G      ++++ +N    +     ++D+ +R G +  A  F+ +     
Sbjct: 545 HS----GLLEQGWRFFY-IMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAP 599

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIME 282
           +   W A++ C  R     E  E   E + E
Sbjct: 600 DATIWGALL-CGCRIYHDIELAEKVAERVFE 629


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 256/651 (39%), Positives = 384/651 (58%), Gaps = 27/651 (4%)

Query: 30  SSVCCCVSLNSSTTPTSLSS-RNKNELIQSLCKQGNLRQALDVLSIEPN------PTQHT 82
           +++    ++ +++ PT+L   R  N  ++SL K G L +AL ++   P+      P    
Sbjct: 11  TNITVSTNITATSAPTTLHKHRLHNSTLKSLSKSGKLDEALRLIEYWPSKSPATAPDVEA 70

Query: 83  YELLLLSCTHHNSLSDALNVHSHLT------DNGFDQDPFLVTKLINVYSHFDSVDDARH 136
             L L SC    +L     ++  L       ++    +P L  KLI ++S    VD+AR 
Sbjct: 71  CALFLHSCISRKALEHGQRLYLQLLLYRDRCNHNLLNNPTLKGKLITLFSVCRRVDEARR 130

Query: 137 VFDKTRRRTIY---VWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           VF+           VW A+    +  G  +E L LY  M      +    F ++  LKAC
Sbjct: 131 VFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEMVCQFGQL--GNFAFSMALKAC 188

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                    L+ G+ +HA VL+   +    +   L+ +Y+  GC   A  VF  M  +NV
Sbjct: 189 ----SDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNV 244

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+++IA   +    FEA+E FR  IM+   +  + VT+ ++L  CA + AL  GK IH
Sbjct: 245 VSWNSLIAGLVKKDGVFEAIEAFR--IMQGKGMGFSWVTLTTILPVCARVTALGSGKEIH 302

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             I++       PV+++LV MYA+CG ++  + VF+ M  +D+ SWN+LI+ Y ++G   
Sbjct: 303 AVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMT 362

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A++ F+EMI  G SP  I+F+++L  CSHAGL ++G  LFE M+ ++ I P+VEHYAC+
Sbjct: 363 EAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACL 422

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VD+LGRA +++EA +I++++  +P   +WGSLL SCR+H NV LAE  +KRLFELEP NA
Sbjct: 423 VDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNA 482

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS--VDEFHPQ 551
           GNYV+L+++YA A MW+ VK V+  +E RG+ K  G S +++K K+++FV+   +EF   
Sbjct: 483 GNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNS 542

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
            E    +   L   M+E GYVP T VVL+D+  E +   V GHSE+LA  F LINT+ G 
Sbjct: 543 VE-YKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLATMFALINTASGM 601

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            IRITKNLR+C DCHS+ K +SK   + I++RD NRFHHF++GVCSC DYW
Sbjct: 602 PIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGVCSCKDYW 652


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/562 (42%), Positives = 357/562 (63%), Gaps = 9/562 (1%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH +    G  +   +VT L+++YS    +D A+ +FD+     +  +NAL    ++ G 
Sbjct: 234 VHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGM 293

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            E  +EL++ +  T +G R +  T   V+   V S  G  LL   + +HA V++   +  
Sbjct: 294 VESSVELFKEL--TASGWRPNSSTLVAVIP--VYSPFGHELL--ARCLHAFVVKARLDAD 347

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
             + T L  +Y R   +  A  +F  M  K + SW+AMI+ YA+NG+   A+ LF+  +M
Sbjct: 348 ALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQ--LM 405

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           +  ++ PN +T+ S L ACA L AL  GK +H  I +  L+  + V++AL+ MYA+CG +
Sbjct: 406 QELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSI 465

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
              + +FD MD ++VVSWN++IS YG+HG G +A++++K+M+   + P+  +F+SV+ AC
Sbjct: 466 AEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYAC 525

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPK 460
           SH GLV+EG+ +F  M  E+ I P +EH  CMVDLLGRA KL EA ++I +  +   GP 
Sbjct: 526 SHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPG 585

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
           VWG+LLG+C +H N +LA+ AS++LFEL+  NAG YVLL+++Y +   + E   V++  +
Sbjct: 586 VWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAK 645

Query: 521 ARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY 580
            R L K PG + IE+  + + F++ D  HPQ E +++ L  L+A+M E GY P T+  LY
Sbjct: 646 TRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALY 705

Query: 581 DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEI 640
           D++ EEKE +V  HSEKLA+AFGL++T  G  IRI KNLR+C DCH+ TKFISK   + I
Sbjct: 706 DVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLI 765

Query: 641 LVRDVNRFHHFRNGVCSCGDYW 662
           +VRD +RFHHFR+GVCSCGDYW
Sbjct: 766 VVRDASRFHHFRDGVCSCGDYW 787



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 214/431 (49%), Gaps = 22/431 (5%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
           N  + A  +H      G+  D F+ + L  +Y      DDAR VFD        +WN L 
Sbjct: 128 NDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLL 187

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
             L     G E LE + RM   G  +R D  T    L+A   +S     +  G+ +H   
Sbjct: 188 AGLP----GSEALEAFVRMVDAGR-VRPDSTTLASSLRAAAEASH----MAMGRCVHGYG 238

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           ++ G     H++T L+ +Y++ G +  A F+F +M   ++V+++A+I+ Y+ NGM   ++
Sbjct: 239 VKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSV 298

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
           ELF+E+        PNS T+V+V+   +        + +H ++++  LD+   V +AL T
Sbjct: 299 ELFKELTASGWR--PNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTT 356

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           +Y R   +E  + +FD M ++ + SWN++IS Y  +G    A+ +F+ M    V P+PI+
Sbjct: 357 LYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPIT 416

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
             S L AC+H G +  GK +   + KE +   +V     ++D+  +   + EA  I +  
Sbjct: 417 ISSTLSACAHLGALSLGKWVHRIISKEKL-ELNVYVMTALIDMYAKCGSIAEARSIFD-- 473

Query: 454 RIEPGPKV-WGSLLGSCRIHCNVELAERASKRLFE--LEPTNAGNYVLLADVYAAA--DM 508
           R++    V W +++    +H     A +  K + +  + PT++     L+ +YA +   +
Sbjct: 474 RMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSS---TFLSVIYACSHGGL 530

Query: 509 WDEVKRVKRLL 519
            DE ++V R++
Sbjct: 531 VDEGQKVFRVM 541


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/618 (37%), Positives = 365/618 (59%), Gaps = 41/618 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL SC    +  +   +H H+   G+D D ++ T LI++Y     ++DAR V
Sbjct: 101 PNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKV 160

Query: 138 FDKTRRRTI--------------YV-----------------WNALFRALTLAGRGEEVL 166
           FD++  R +              Y+                 WNA+       G  +E L
Sbjct: 161 FDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEAL 220

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++ M    T +R D  T   V+ AC  S+     ++ G+++H+ +  HG+   + I+ 
Sbjct: 221 ELFKEM--MKTNVRPDESTMVSVVSACAQSAS----IELGRQVHSWIDDHGFGSNLKIVN 274

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LID+Y + G V  A  +F  ++ K+V+SW+ +I  Y    +  EAL LF+EM+      
Sbjct: 275 ALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES- 333

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELG 344
            PN VTM+S+L ACA L A+E G+ IH YI +R  G+ +     ++L+ MYA+CG +E  
Sbjct: 334 -PNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAA 392

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           Q VFD +  R + SWN++I  + +HG    A  IF  M  + + P  I+FV +L ACSH+
Sbjct: 393 QQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 452

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+++ G+ +F SM++++ I P +EHY CM+DLLG +   +EA ++I  + +EP   +W S
Sbjct: 453 GMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 512

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +C+++ NVEL E  ++ L ++EP N G+YVLL+++YA A  W+EV +++ LL  +G+
Sbjct: 513 LLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGM 572

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +KVPG S IE+   ++ F+  D+FHP+  +++ +L  +   ++E G+VP T  VL +++ 
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 632

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           E KE  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH  TK ISK   +EI+ RD
Sbjct: 633 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 692

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHFR+GVCSC DYW
Sbjct: 693 RTRFHHFRDGVCSCNDYW 710



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 217/428 (50%), Gaps = 46/428 (10%)

Query: 102 VHSHLTDNGFDQDPFLVTKLIN---VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           +H+ +   G     + ++KLI    +  HFD +  A  VF+  +   + +WN +FR   L
Sbjct: 21  IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 80

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +      L LY  M     G+  + +T+ ++LK+C  S       + G++IH  VL+ GY
Sbjct: 81  SSDPVSALYLYVCM--ISLGLLPNCYTFPFLLKSCAKSKA----FREGQQIHGHVLKLGY 134

Query: 219 NGIVHIMTTLIDMYARFG----------------CVMYAGFV---------------FSQ 247
           +  +++ T+LI MY + G                 V Y   +               F +
Sbjct: 135 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDE 194

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           + +K+VVSW+AMI+ YA  G   EALELF+EM+    ++ P+  TMVSV+ ACA  A++E
Sbjct: 195 IPIKDVVSWNAMISGYAETGNNKEALELFKEMM--KTNVRPDESTMVSVVSACAQSASIE 252

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+ +H +I   G  S L +V+AL+ +Y +CG++E    +F+ +  +DV+SWN+LI  Y 
Sbjct: 253 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 312

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE-HMIRPS 426
                 +A+ +F+EM+  G SP+ ++ +S+L AC+H G +E G+ +   + K    +  +
Sbjct: 313 HMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANA 372

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH--CNVELAERASKR 484
             H   ++D+  +   +E A ++ + + +      W +++    +H   N      +  R
Sbjct: 373 SSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMR 431

Query: 485 LFELEPTN 492
             E+EP +
Sbjct: 432 KNEIEPDD 439



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 175/404 (43%), Gaps = 51/404 (12%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + GN ++AL++    +     P + T   ++ +C    S+     VHS + D
Sbjct: 204 NAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD 263

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GF  +  +V  LI++Y     V+ A  +F+    + +  WN L    T     +E L L
Sbjct: 264 HGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLL 323

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV---LRHGYNGIVHIM 225
           ++ M  +G     +  T   +L AC         ++ G+ IH  +   L+   N   H  
Sbjct: 324 FQEMLRSGES--PNDVTMLSILPACAH----LGAIEIGRWIHVYINKRLKGVANASSH-R 376

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           T+LIDMYA+ G +  A  VF  +  +++ SW+AMI  +A +G A  A ++F    M  ++
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSR--MRKNE 434

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + P+ +T V +L AC+    L+ G+    +I R           ++   Y    KLE   
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGR----HIFR-----------SMKEDYKITPKLEHYG 479

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
           C+ D +               G  G   +A ++   M    + P  + + S+L AC    
Sbjct: 480 CMIDLL---------------GHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACKMYA 521

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
            VE G+   +++ K     P    Y  + ++   A +  E AKI
Sbjct: 522 NVELGESYAQNLIKIEPKNPG--SYVLLSNIYATAGRWNEVAKI 563


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/608 (38%), Positives = 359/608 (59%), Gaps = 42/608 (6%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
            L SCT   +LS    +H+HL       D F  + LI++  + + +D A  VF + +   
Sbjct: 21  FLESCT---TLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPN 77

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           ++++N+  R  + +   ++    Y  +     G+  D  TY +++KAC         L  
Sbjct: 78  LFIYNSFIRGFSGSKDPDKSFHFY--VQSKRNGLVPDNLTYPFLVKACTQKGS----LDM 131

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV--------------------MYAGFV- 244
           G + H  ++RHG++  V++  +L+ MY+  G +                    M AG++ 
Sbjct: 132 GIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIK 191

Query: 245 ----------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
                     F +M  KN+V+WS MI+ YA+N    +A+EL+   +++S  +  N   MV
Sbjct: 192 SGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELY--FLLQSEGVHANETVMV 249

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           SV+ +CA L ALE G+  H YILR  +   L + +ALV MYARCG ++    VFD +  R
Sbjct: 250 SVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGR 309

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           D +SW +LI+ + +HGY  KA++ F  M   G++P  I+F +VL ACSH GLVE G  LF
Sbjct: 310 DALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELF 369

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
           ESM++++ I P +EHY CMVDLLGRA KL EA K + ++ ++P   +WG+LLG+CRIH N
Sbjct: 370 ESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKN 429

Query: 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
            E+AERA K L EL+P ++G YVLL+++YA  + W+ V+ ++++++ RG+ K PG +  E
Sbjct: 430 SEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFE 489

Query: 535 VKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGH 594
           +  K++ F   D+ HP+ +Q+  +   +  +++  GY       L+D+D EEKE  +  H
Sbjct: 490 MDGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRH 549

Query: 595 SEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
           SEKLA+A+ ++ T   + IRI KNLR+CEDCH+ TK ISK   +E++VRD NRFHHF+ G
Sbjct: 550 SEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGG 609

Query: 655 VCSCGDYW 662
            CSC DYW
Sbjct: 610 ACSCMDYW 617



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 166/407 (40%), Gaps = 82/407 (20%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF--------- 128
           P   TY  L+ +CT   SL   +  H  +  +GFD D ++   L+ +YS           
Sbjct: 111 PDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYV 170

Query: 129 ----------------------DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
                                   V  AR +FDK   + +  W+ +          ++ +
Sbjct: 171 FRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAI 230

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           ELY  +   G            V+ + +AS      L+ G+  H  +LR+     + + T
Sbjct: 231 ELYFLLQSEGVHANET------VMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGT 284

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+DMYAR G +  A +VF Q+  ++ +SW+ +IA +A +G A +ALE F    ME   L
Sbjct: 285 ALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSR--MEKAGL 342

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P  +T  +VL AC+           HG ++ RGL+    +  ++   Y    +LE   C
Sbjct: 343 TPREITFTAVLSACS-----------HGGLVERGLE----LFESMKRDYRIEPRLEHYGC 387

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC---SH 403
           + D +                  G  GK  +  K +    + P+   + ++LGAC    +
Sbjct: 388 MVDLL------------------GRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKN 429

Query: 404 AGLVEE-GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
           + + E  GK L E ++ EH       +Y  + ++  R NK E    I
Sbjct: 430 SEIAERAGKTLIE-LKPEH-----SGYYVLLSNIYARTNKWENVENI 470



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 13/215 (6%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHLTDNG 110
           +I    K     +A+++  +  +   H  E +++S    C H  +L      H ++  N 
Sbjct: 216 MISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNK 275

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              +  L T L+++Y+   S+D A  VFD+   R    W  L     + G  E+ LE + 
Sbjct: 276 MTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFS 335

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLI 229
           RM   G   R    T+T VL AC   S G  L++ G E+  S+ R +     +     ++
Sbjct: 336 RMEKAGLTPR--EITFTAVLSAC---SHG-GLVERGLELFESMKRDYRIEPRLEHYGCMV 389

Query: 230 DMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-AC 262
           D+  R G +  A    ++M +K N   W A++ AC
Sbjct: 390 DLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGAC 424


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/691 (36%), Positives = 372/691 (53%), Gaps = 75/691 (10%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHN------ 94
           S  PTSL      + I+     G+L++A  +    P P   T+ +L+ + T H       
Sbjct: 3   SKLPTSLPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAI 62

Query: 95  ---------------------------SLSDALN---VHSHLTDNGFDQDPFLVTKLINV 124
                                      SL D +N   VH      GF  D  L   LI++
Sbjct: 63  QYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDM 122

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
           Y      + AR VF+    R +  W ++       G   E L  +R+M   G   R +  
Sbjct: 123 YGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGE--RPNSV 180

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           T + +L AC         LK G+E+H  V+R+G  G V + + L++MYA    +  A  V
Sbjct: 181 TVSSILPACT----DLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLV 236

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI------------------------ 280
           F  M+ ++ VSW+ +I  Y  N    + L +F  M+                        
Sbjct: 237 FDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRT 296

Query: 281 ---------MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
                    M++    PN +T+ SVL AC  L +L  GK IHGYI R      L   +AL
Sbjct: 297 EKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTAL 356

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           V MYA+CG LEL + VF  M KRD VSWN++I +  +HG G +A+ +F+EM+  GV P+ 
Sbjct: 357 VFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNS 416

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           ++F  VL  CSH+ LV+EG ++F+SM ++H + P  +H++CMVD+L RA +LEEA + I+
Sbjct: 417 VTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIK 476

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
            + IEP    WG+LLG CR++ NVEL   A+ RLFE+E  N GNYVLL+++  +A +W E
Sbjct: 477 KMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSE 536

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGY 571
               ++L+  RG+ K PG S I+V+ ++++FV  D+ + Q ++++  L  +  +M+  GY
Sbjct: 537 ASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGY 596

Query: 572 VPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKF 631
           +P T  VL D+D EEKE ++  HSEKLAVAFG++N +   +IR+ KNLR+C DCH+  KF
Sbjct: 597 LPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKF 656

Query: 632 ISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           ++K    +I+VRD  RFHHFR+G+CSC D+W
Sbjct: 657 MAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/641 (38%), Positives = 378/641 (58%), Gaps = 39/641 (6%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSH-LT 107
           N +I  L + G   +A+    D++++   P   T+   L +C+    L     VH+  L 
Sbjct: 229 NTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLK 288

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR--RTIYVWNALFRALTL-AGRGEE 164
           D+    + F+ + L+++Y+  + V  AR VFD      R + +WNA+        G  EE
Sbjct: 289 DDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEE 348

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE-IHASVLRHGYNGIVH 223
            +EL+ RM     G      T   VL AC  S   F+    GKE +H  V++        
Sbjct: 349 AIELFSRMEAE-AGCAPSETTMAGVLPACARSEV-FT----GKEAVHGYVVKRDMASNRF 402

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM---- 279
           +   L+DMYAR G +  A  +F+ + ++++VSW+ +I      G+  EA +L REM    
Sbjct: 403 VQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPS 462

Query: 280 -------IMESHDLC-------PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
                  ++E  D         PN++T++++L  CA LAA  +GK IHGY +R  L+S L
Sbjct: 463 SAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDL 522

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V SALV MYA+CG L L + VFD + +R+V++WN LI +YG+HG G +A+ +F  M+ +
Sbjct: 523 AVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVAN 582

Query: 386 G-VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
           G  +P+ ++F++ L ACSH+GLV+ G  LF+ M++++   P+   +AC+VD+LGRA +L+
Sbjct: 583 GEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLD 642

Query: 445 EAAKIIEDLRIEPGP---KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
           EA  II  +   PG      W ++LG+CR+H NV+L   A++RLFELEP  A +YVLL +
Sbjct: 643 EAYGIISSM--APGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCN 700

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +Y+AA +W+    V+ ++  RG+ K PG S IE+   ++ F++ +  HP+  Q+HA +  
Sbjct: 701 IYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDA 760

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           L   M+ +GYVP T  VL+D+D  EK  ++  HSEKLA+AFGL+    G TIR+ KNLR+
Sbjct: 761 LWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRV 820

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCH   KFIS+   +EI++RDV RFHHFR+G CSCGDYW
Sbjct: 821 CNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 176/359 (49%), Gaps = 29/359 (8%)

Query: 42  TTPTSLSSRNKNELIQSLC---KQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSD 98
           T P    + + N LI +LC   + G+   AL  +  +   +  T   +LL+C+H      
Sbjct: 111 TPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADHEVSSFTLVSVLLACSHLADQGH 170

Query: 99  ALNVHSH-------LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT--IYVW 149
            L   +H         D G ++ PF    L+++Y+    VDDA+ +F  +      +  W
Sbjct: 171 RLGREAHAFALKHGFLDKGRERFPF--NALLSMYARLGLVDDAQRLFFSSGAGVGDLVTW 228

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
           N +   L   GR EE +++   M     G+R D  T+   L AC        LL  G+E+
Sbjct: 229 NTMISLLVQGGRCEEAVQVLYDM--VALGVRPDGVTFASALPACSR----LELLGVGREV 282

Query: 210 HASVLRH---GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--KNVVSWSAMIACYA 264
           HA VL+      N  V   + L+DMYA    V +A  VF  +    + +  W+AMI  YA
Sbjct: 283 HAFVLKDDDLAANSFV--ASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYA 340

Query: 265 RN-GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           ++ GM  EA+ELF  M  E+    P+  TM  VL ACA        + +HGY+++R + S
Sbjct: 341 QHGGMDEEAIELFSRMEAEA-GCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMAS 399

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
              V +AL+ MYAR G+++    +F  +D RD+VSWN+LI+   V G   +A Q+ +EM
Sbjct: 400 NRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREM 458



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 149/296 (50%), Gaps = 25/296 (8%)

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHG--YNGIVHIMTTLIDMYARFGCVMYAGFVF 245
           + L   + S+      +  + IH + LR    +     +   L+  YAR G +  A  +F
Sbjct: 49  FALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALF 108

Query: 246 SQMA--VKNVVSWSAMIAC---YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           +     +++ VS++++I+    + R G A +AL   R+M+ + H++  +S T+VSVL AC
Sbjct: 109 AATPPDLRDAVSYNSLISALCLFRRWGHALDAL---RDMLAD-HEV--SSFTLVSVLLAC 162

Query: 301 AALA--ALEQGKMIHGYILRRG-LD---SILPVVSALVTMYARCGKLELGQCVF--DHMD 352
           + LA      G+  H + L+ G LD      P  +AL++MYAR G ++  Q +F      
Sbjct: 163 SHLADQGHRLGREAHAFALKHGFLDKGRERFPF-NALLSMYARLGLVDDAQRLFFSSGAG 221

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
             D+V+WN++IS     G   +A+Q+  +M+  GV P  ++F S L ACS   L+  G+ 
Sbjct: 222 VGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGRE 281

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV--WGSLL 466
           +   + K+  +  +    + +VD+     ++  A ++  D+  E G ++  W +++
Sbjct: 282 VHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVF-DMVPEHGRQLGMWNAMI 336


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/578 (40%), Positives = 360/578 (62%), Gaps = 15/578 (2%)

Query: 87  LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI 146
           LLSC    +L     VH+ +  NG  ++  +  KL+ +Y    +++DA+ +FD   +R  
Sbjct: 60  LLSC---RNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHP 116

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206
           Y W+ +       G       ++R +  +G  +  D ++   V++AC         LK G
Sbjct: 117 YSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPL--DDYSAPVVIRACR----DLKDLKCG 170

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           + IH   L+ G +    +  TL+DMYAR   V  A  +F +M  +++ +W+ MI   A +
Sbjct: 171 RLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAES 230

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG--LDSI 324
           G+  E+L  F  M   +  + P+ V +V+V+ ACA L A+ + K IH YI   G  LD I
Sbjct: 231 GVPVESLVFFDRM--RNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVI 288

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           L   +A++ MYA+CG +E  + +FD M  R+V++W+++I++YG HG G KA+++F  M+ 
Sbjct: 289 LG--TAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLR 346

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            G+ P+ I+FVS+L ACSHAGL+EEG+  F SM  E+ + P V+HY CMVDLLGRA +L+
Sbjct: 347 SGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLD 406

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
           EA ++IE + +E    +WG+LLG+CRIH +++LAER ++ L +L+    G+YVLL+++YA
Sbjct: 407 EALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYA 466

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
            A  W+++ + + L+   GL+K+PGR+ IEV  K+Y F   D+ HP+  +++ +L  L  
Sbjct: 467 NAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGE 526

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           +++  GY P T  VLYD+D E K+ ++  HSEKLA+AFGL+   +G  IRITKNLR+C D
Sbjct: 527 KLEVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGD 586

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH+F KF+S    K I+VRD  RFHHF+ GVCSC DYW
Sbjct: 587 CHTFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 143/292 (48%), Gaps = 10/292 (3%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
            ++  +++ +C     L     +H      G D   F+   L+++Y+    V+DA  +F 
Sbjct: 151 DYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFV 210

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           K  +R +  W  +  AL  +G   E L  + RM     GI  D+     V+ AC      
Sbjct: 211 KMWKRDLATWTVMIGALAESGVPVESLVFFDRMR--NQGIVPDKVALVTVVYACAK---- 264

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
              +   K IHA +   GY+  V + T +IDMYA+ G V  A ++F +M V+NV++WSAM
Sbjct: 265 LGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAM 324

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           IA Y  +G   +ALELF  M+     + PN +T VS+L AC+    +E+G+     +   
Sbjct: 325 IAAYGYHGQGEKALELFPMMLRSG--ILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDE 382

Query: 320 -GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
            G+   +   + +V +  R G+L+    + + M  ++D V W +L+ +  +H
Sbjct: 383 YGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIH 434


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/564 (40%), Positives = 346/564 (61%), Gaps = 11/564 (1%)

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            + +HS  T  G     +++T  I++YS    +     +F + R+  I  +NA+    T 
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G  E  L L++ +  +G  +RS        L + V  S    L+     IH   L+  +
Sbjct: 300 NGETELSLSLFKELMLSGARLRSS------TLVSLVPVSGHLMLIY---AIHGYCLKSNF 350

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
                + T L  +Y++   +  A  +F +   K++ SW+AMI+ Y +NG+  +A+ LFRE
Sbjct: 351 LSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFRE 410

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M  +  +  PN VT+  +L ACA L AL  GK +H  +     +S + V +AL+ MYA+C
Sbjct: 411 M--QKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKC 468

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G +   + +FD M K++ V+WN++IS YG+HG G +A+ IF EM+  G++P+P++F+ VL
Sbjct: 469 GSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVL 528

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSHAGLV+EG  +F SM   +   PSV+HYACMVD+LGRA  L+ A + IE + IEPG
Sbjct: 529 YACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPG 588

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             VW +LLG+CRIH +  LA   S++LFEL+P N G +VLL+++++A   + +   V++ 
Sbjct: 589 SSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQT 648

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
            + R L K PG + IE+    + F S D+ HPQ ++++  L  L  +M+E GY P+T++ 
Sbjct: 649 AKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELA 708

Query: 579 LYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANK 638
           L+D++ EE+E +V  HSE+LA+AFGLI T  G  IRI KNLR+C DCH+ TK ISK   +
Sbjct: 709 LHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITER 768

Query: 639 EILVRDVNRFHHFRNGVCSCGDYW 662
            I+VRD NRFHHF++GVCSCGDYW
Sbjct: 769 VIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 194/416 (46%), Gaps = 19/416 (4%)

Query: 58  SLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL 117
           SL    +LR++ D+      P   TY   + + +          +H     +G D +  L
Sbjct: 102 SLSVFAHLRKSTDL-----KPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLL 156

Query: 118 VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM-NGTG 176
            + ++ +Y  F  V+DAR VFD+   +   +WN +           E ++++R + N + 
Sbjct: 157 GSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESC 216

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
           T  R D  T   +L A          L+ G +IH+   + G     +++T  I +Y++ G
Sbjct: 217 T--RLDTTTLLDILPAVAE----LQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCG 270

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            +     +F +    ++V+++AMI  Y  NG    +L LF+E+++    L   S T+VS+
Sbjct: 271 KIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARL--RSSTLVSL 328

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           +     L  +     IHGY L+    S   V +AL T+Y++  ++E  + +FD   ++ +
Sbjct: 329 VPVSGHLMLI---YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSL 385

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
            SWN++IS Y  +G    AI +F+EM     SP+P++   +L AC+  G +  GK + + 
Sbjct: 386 PSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDL 445

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           +R       S+     ++ +  +   + EA ++  DL  +     W +++    +H
Sbjct: 446 VRSTDF-ESSIYVSTALIGMYAKCGSIAEARRLF-DLMTKKNEVTWNTMISGYGLH 499



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 163/316 (51%), Gaps = 10/316 (3%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
            S+S     H+ +  +GF  D  L+TKL    S   ++  AR +F   +R  ++++N L 
Sbjct: 31  TSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLM 90

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           R  ++       L ++  +  + T ++ +  TY + + A    + GF   + G+ IH   
Sbjct: 91  RGFSVNESPHSSLSVFAHLRKS-TDLKPNSSTYAFAISA----ASGFRDDRAGRVIHGQA 145

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           +  G +  + + + ++ MY +F  V  A  VF +M  K+ + W+ MI+ Y +N M  E++
Sbjct: 146 VVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESI 205

Query: 274 ELFREMIMESHDLCP--NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           ++FR++I ES   C   ++ T++ +L A A L  L  G  IH    + G  S   V++  
Sbjct: 206 QVFRDLINES---CTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGF 262

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           +++Y++CGK+++G  +F    K D+V++N++I  Y  +G    ++ +FKE++  G     
Sbjct: 263 ISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRS 322

Query: 392 ISFVSVLGACSHAGLV 407
            + VS++    H  L+
Sbjct: 323 STLVSLVPVSGHLMLI 338



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 17/219 (7%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I    + G    A+ +          PNP   T   +L +C    +LS    VH  +
Sbjct: 389 NAMISGYTQNGLTEDAISLFREMQKSEFSPNPV--TITCILSACAQLGALSLGKWVHDLV 446

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
               F+   ++ T LI +Y+   S+ +AR +FD   ++    WN +     L G+G+E L
Sbjct: 447 RSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEAL 506

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL-RHGYNGIVHIM 225
            ++  M    +GI     T+  VL AC  S  G  L+K G EI  S++ R+G+   V   
Sbjct: 507 NIFYEM--LNSGITPTPVTFLCVLYAC--SHAG--LVKEGDEIFNSMIHRYGFEPSVKHY 560

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMI-AC 262
             ++D+  R G +  A      M+++   S W  ++ AC
Sbjct: 561 ACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGAC 599


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/616 (38%), Positives = 379/616 (61%), Gaps = 15/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+   +  + + AL + S       +P   T+  LL +C+  + L     VH+ +  
Sbjct: 88  NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWNALFRALTLAGRGEEVL 166
            GFD D F+   LI +Y+    +  AR VF+      RTI  W A+  A    G   E L
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           E++ +M      ++ D      VL A    +C    LK G+ IHASV++ G      ++ 
Sbjct: 208 EIFSQMRKMD--VKPDWVALVSVLNAF---TC-LQDLKQGRSIHASVVKMGLEIEPDLLI 261

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +L  MYA+ G V  A  +F +M   N++ W+AMI+ YA+NG A EA+++F EMI  + D+
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMI--NKDV 319

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+++++ S + ACA + +LEQ + ++ Y+ R      + + SAL+ M+A+CG +E  + 
Sbjct: 320 RPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARL 379

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VFD    RDVV W+++I  YG+HG   +AI +++ M   GV P+ ++F+ +L AC+H+G+
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGM 439

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V EG   F  M  +H I P  +HYAC++DLLGRA  L++A ++I+ + ++PG  VWG+LL
Sbjct: 440 VREGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +C+ H +VEL E A+++LF ++P+N G+YV L+++YAAA +WD V  V+  ++ +GL K
Sbjct: 499 SACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNK 558

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S +EV+ ++ +F   D+ HP++E++   +  + + +KE G+V      L+DL+ EE
Sbjct: 559 DVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEE 618

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
            E  +  HSE++A+A+GLI+T +G  +RITKNLR C +CH+ TK ISK  ++EI+VRD N
Sbjct: 619 AEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTN 678

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF++GVCSCGDYW
Sbjct: 679 RFHHFKDGVCSCGDYW 694



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 127/392 (32%), Positives = 212/392 (54%), Gaps = 15/392 (3%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  L+ S TH   L     +H+ L   G     FL+TKLI+  S F  +  AR VFD   
Sbjct: 24  YASLIDSATHKAQLK---QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLP 80

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           R  I+ WNA+ R  +     ++ L +Y  M      +  D FT+ ++LKAC     G S 
Sbjct: 81  RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQ--LARVSPDSFTFPHLLKAC----SGLSH 134

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--KNVVSWSAMI 260
           L+ G+ +HA V R G++  V +   LI +YA+   +  A  VF  + +  + +VSW+A++
Sbjct: 135 LQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIV 194

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           + YA+NG   EALE+F +  M   D+ P+ V +VSVL A   L  L+QG+ IH  +++ G
Sbjct: 195 SAYAQNGEPMEALEIFSQ--MRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           L+    ++ +L TMYA+CG++   + +FD M   +++ WN++IS Y  +GY  +AI +F 
Sbjct: 253 LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           EMI   V P  IS  S + AC+  G +E+ + ++E + +    R  V   + ++D+  + 
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDY-RDDVFISSALIDMFAKC 371

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
             + E A+++ D  ++    VW +++    +H
Sbjct: 372 GSV-EGARLVFDRTLDRDVVVWSAMIVGYGLH 402


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/553 (41%), Positives = 341/553 (61%), Gaps = 8/553 (1%)

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           GF  D +++T LI+V+S  + VD AR +F   R+  +  +NAL    +  G  E  ++ +
Sbjct: 234 GFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYF 293

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           R +  +G  + S        +   +  S  F  L     I    ++ G      + T L 
Sbjct: 294 RELLVSGQRVSSS------TMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALT 347

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
            +Y+R   +  A  +F + + K V +W+AMI+ YA++G+   A+ LF+EM+  + +  PN
Sbjct: 348 TIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMM--TTEFTPN 405

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
            VT+ S+L ACA L AL  GK +H  I  + L+  + V +AL+ MYA+CG +     +FD
Sbjct: 406 PVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFD 465

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
              +++ V+WN++I  YG+HGYG +A+++F EM++ G  PS ++F+SVL ACSHAGLV E
Sbjct: 466 LTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVRE 525

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           G  +F +M  ++ I P  EHYACMVD+LGRA +LE+A + I  + +EPGP VWG+LLG+C
Sbjct: 526 GDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGAC 585

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
            IH +  LA  AS+RLFEL+P N G YVLL+++Y+    + +   V+  ++ R L K PG
Sbjct: 586 MIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPG 645

Query: 530 RSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKER 589
            + IEV    + FV  D  H Q   ++A L  L+ +M+E GY  +T   L+D++ EEKE 
Sbjct: 646 CTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKEL 705

Query: 590 IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
           +   HSEKLA+AFGLI T  G  IRI KNLR+C DCH+ TKFISK   + I+VRD NRFH
Sbjct: 706 MFNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFH 765

Query: 650 HFRNGVCSCGDYW 662
           HF++G+CSCGDYW
Sbjct: 766 HFKDGICSCGDYW 778



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 200/396 (50%), Gaps = 13/396 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P   TY   + +    N     + +H+H   +GFD + F+ + L+++Y  F  V  AR 
Sbjct: 103 SPDNFTYAFAISASPDDNL---GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARK 159

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFDK   R   +WN +   L      ++ +++++ M     G+R D  T   VL A    
Sbjct: 160 VFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDM--VAQGVRLDSTTVATVLPAVAE- 216

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 +K G  I    L+ G++   +++T LI ++++   V  A  +F  +   ++VS+
Sbjct: 217 ---MQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSY 273

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +A+I+ ++ NG    A++ FRE+++    +  +S TMV ++   +    L     I G+ 
Sbjct: 274 NALISGFSCNGETECAVKYFRELLVSGQRV--SSSTMVGLIPVSSPFGHLHLACCIQGFC 331

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++ G      V +AL T+Y+R  +++L + +FD   ++ V +WN++IS Y   G    AI
Sbjct: 332 VKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAI 391

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F+EM+    +P+P++  S+L AC+  G +  GK + + ++ +++   ++     ++D+
Sbjct: 392 SLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNL-EQNIYVSTALIDM 450

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
             +   + EA+++  DL  E     W +++    +H
Sbjct: 451 YAKCGNISEASQLF-DLTSEKNTVTWNTMIFGYGLH 485



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 100/439 (22%), Positives = 199/439 (45%), Gaps = 42/439 (9%)

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
           H+ L  NG+  D   VTKL        +   AR +F    +  I+++N L +  + +   
Sbjct: 28  HAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSPDA 87

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
             +   Y  +    T +  D FTY + + A    + G  L       HA  +  G++  +
Sbjct: 88  SSI-SFYTHLL-KNTTLSPDNFTYAFAISASPDDNLGMCL-------HAHAVVDGFDSNL 138

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
            + + L+D+Y +F  V YA  VF +M  ++ V W+ MI    RN    +++++F++M+ +
Sbjct: 139 FVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQ 198

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
              L  +S T+ +VL A A +  ++ G  I    L+ G      V++ L++++++C  ++
Sbjct: 199 GVRL--DSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVD 256

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV----- 397
             + +F  + K D+VS+N+LIS +  +G    A++ F+E++  G   S  + V +     
Sbjct: 257 TARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSS 316

Query: 398 ------LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
                 L  C     V+ G +L          +PSV     +  +  R N+++ A ++ +
Sbjct: 317 PFGHLHLACCIQGFCVKSGTIL----------QPSVS--TALTTIYSRLNEIDLARQLFD 364

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN-AGNYVLLADVYAAADMWD 510
           +   E     W +++     +    L E A     E+  T    N V +  + +A     
Sbjct: 365 E-SSEKTVAAWNAMISG---YAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLG 420

Query: 511 EV---KRVKRLLEARGLQK 526
            +   K V +L++++ L++
Sbjct: 421 ALSFGKSVHQLIKSKNLEQ 439



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 8/221 (3%)

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           L A ++ +C F    H  E HA ++R+GY   +  +T L       G   +A  +F  + 
Sbjct: 11  LLALISKACTF---PHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVP 67

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
             ++  ++ +I  ++ +  A      F   ++++  L P++ T      A +A      G
Sbjct: 68  KPDIFLFNVLIKGFSFSPDASSI--SFYTHLLKNTTLSPDNFTYAF---AISASPDDNLG 122

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
             +H + +  G DS L V SALV +Y +  ++   + VFD M  RD V WN++I+    +
Sbjct: 123 MCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRN 182

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
                ++Q+FK+M+  GV     +  +VL A +    V+ G
Sbjct: 183 CCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVG 223


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/630 (37%), Positives = 381/630 (60%), Gaps = 25/630 (3%)

Query: 46  SLSSRNKNELIQS------LCKQGNLRQAL-DVLSIEPNPTQHTYELLLLSCTHHNSLSD 98
           S SS   N ++Q+      LC  G L++AL ++  + P    H Y+ LL +C    +L D
Sbjct: 11  SFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRD 70

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
              VH+H+    +    +L T+L+  Y   D ++DAR V D+   + +  W A+    + 
Sbjct: 71  GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQ 130

Query: 159 AGRGEEVLELYRRMNGTGTGIRSD----RFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
            G   E L ++  M      +RSD     FT+  VL +C+ +S G  L   GK+IH  ++
Sbjct: 131 TGHSSEALTVFAEM------MRSDGKPNEFTFATVLTSCIRAS-GLGL---GKQIHGLIV 180

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           +  Y+  + + ++L+DMYA+ G +  A  +F  +  ++VVS +A+IA YA+ G+  EALE
Sbjct: 181 KWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALE 240

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           +F  +   S  + PN VT  S+L A + LA L+ GK  H ++LRR L     + ++L+ M
Sbjct: 241 MFHRL--HSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDM 298

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPIS 393
           Y++CG L   + +FD+M +R  +SWN+++  Y  HG G + +++F+ M     V P  ++
Sbjct: 299 YSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVT 358

Query: 394 FVSVLGACSHAGLVEEGKMLFESM-RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
            ++VL  CSH  + + G  +F+ M   E+  +P  EHY C+VD+LGRA +++EA + I+ 
Sbjct: 359 LLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKR 418

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
           +  +P   V GSLLG+CR+H +V++ E   +RL E+EP NAGNYV+L+++YA+A  W +V
Sbjct: 419 MPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADV 478

Query: 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV 572
             V+ ++  + + K PGRS I+ ++ ++ F + D  HP+ E++ A +  +S +MK+ GYV
Sbjct: 479 NNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYV 538

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
           P    VLYD+D E+KE+++LGHSEKLA+ FGLI T +G  IR+ KNLR+C DCH+F K  
Sbjct: 539 PDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIF 598

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           SK   +E+ +RD NRFH   +G+CSCGDYW
Sbjct: 599 SKVFEREVSLRDKNRFHQIVDGICSCGDYW 628


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/614 (40%), Positives = 364/614 (59%), Gaps = 13/614 (2%)

Query: 53   NELIQSLCKQGNLRQALDV-LSIEPN---PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
            N ++  L + G   +A  V L ++     P   TY  LL +    ++L     VH H  +
Sbjct: 493  NAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVE 552

Query: 109  NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
             G   D  + +  I++Y    S+DDAR +FDK   R +  WNA+         G E L L
Sbjct: 553  TGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSL 612

Query: 169  YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            + +M   G     D  T+  +L A V        L+  KE+H+     G   +  +   L
Sbjct: 613  FLQMQREG--FIPDATTFINILSANVDEEA----LEWVKEVHSHATDAGLVDL-RVGNAL 665

Query: 229  IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
            +  Y++ G V YA  VF  M  +NV +W+ MI   A++G   +A   F +M+ E   + P
Sbjct: 666  VHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREG--IVP 723

Query: 289  NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
            ++ T VS+L ACA+  ALE  K +H + +  GL S L V +ALV MYA+CG ++  + VF
Sbjct: 724  DATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVF 783

Query: 349  DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
            D M +RDV SW  +I     HG G +A+  F +M   G  P+  S+V+VL ACSHAGLV+
Sbjct: 784  DDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVD 843

Query: 409  EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            EG+  F SM +++ I P++EHY CMVDLLGRA  LEEA   I ++ IEP    WG+LLG+
Sbjct: 844  EGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGA 903

Query: 469  CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
            C  + N+E+AE A+K   +L+P +A  YVLL+++YAA   W++   V+ +++ +G++K P
Sbjct: 904  CVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEP 963

Query: 529  GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
            GRS IEV  +++SFV  D  HP+ ++++A L +L   +K KGYVP T++VL + D E KE
Sbjct: 964  GRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKE 1023

Query: 589  RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
            + +  HSEKLA+ +GL++T   + IR+ KNLR+C DCH+ TKFISK   +EI+ RD  RF
Sbjct: 1024 QALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRF 1083

Query: 649  HHFRNGVCSCGDYW 662
            HHF++GVCSCGDYW
Sbjct: 1084 HHFKDGVCSCGDYW 1097



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/323 (33%), Positives = 170/323 (52%), Gaps = 8/323 (2%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           +Y  +L  C     +  A  VH  +  +G +Q+ ++  KL+ VY     +  AR VFDK 
Sbjct: 120 SYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKL 179

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
            ++ IY+W  +       G  E+ + +Y +M       + +  TY  +LKAC    C   
Sbjct: 180 LKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECG--QPNEITYLSILKAC----CCPV 233

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            LK GK+IHA +++ G+   V + T L++MY + G +  A  +F +M  +NV+SW+ MI 
Sbjct: 234 NLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIG 293

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
             A  G   EA  LF +M  E     PNS T VS+L A A+  ALE  K +H + +  GL
Sbjct: 294 GLAHYGRGQEAFHLFLQMQREG--FIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGL 351

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
              L V +ALV MYA+ G ++  + VFD M +RD+ SW  +I     HG G +A  +F +
Sbjct: 352 ALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQ 411

Query: 382 MIYHGVSPSPISFVSVLGACSHA 404
           M  +G  P+  +++S+L A + A
Sbjct: 412 MQRNGCLPNLTTYLSILNASAIA 434



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 171/324 (52%), Gaps = 10/324 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P + TY  +L +C    +L     +H+H+  +GF  D  + T L+N+Y    S++DA+ 
Sbjct: 216 QPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQL 275

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FDK   R +  W  +   L   GRG+E   L+ +M   G     + +TY  +L A  ++
Sbjct: 276 IFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREG--FIPNSYTYVSILNANASA 333

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+  KE+H+  +  G    + +   L+ MYA+ G +  A  VF  M  +++ SW
Sbjct: 334 GA----LEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSW 389

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA--ALAALEQGKMIHG 314
           + MI   A++G   EA  LF +M  + +   PN  T +S+L A A  + +ALE  K++H 
Sbjct: 390 TVMIGGLAQHGRGQEAFSLFLQM--QRNGCLPNLTTYLSILNASAIASTSALEWVKVVHK 447

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
           +    G  S L + +AL+ MYA+CG ++  + VFD M  RDV+SWN+++     +G G +
Sbjct: 448 HAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHE 507

Query: 375 AIQIFKEMIYHGVSPSPISFVSVL 398
           A  +F +M   G+ P   +++S+L
Sbjct: 508 AFTVFLQMQQEGLVPDSTTYLSLL 531



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 205/448 (45%), Gaps = 10/448 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +TY  +L +     +L     VHSH  + G   D  +   L+++Y+   S+DDAR V
Sbjct: 318 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 377

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    R I+ W  +   L   GRG+E   L+ +M   G     +  TY  +L A   +S
Sbjct: 378 FDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGC--LPNLTTYLSILNASAIAS 435

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
              S L+  K +H      G+   + I   LI MYA+ G +  A  VF  M  ++V+SW+
Sbjct: 436 T--SALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWN 493

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AM+   A+NG   EA  +F +M  E   L P+S T +S+L    +  ALE    +H + +
Sbjct: 494 AMMGGLAQNGCGHEAFTVFLQMQQEG--LVPDSTTYLSLLNTHGSTDALEWVNEVHKHAV 551

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
             GL S   V SA + MY RCG ++  + +FD +  R V +WN++I        G +A+ 
Sbjct: 552 ETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALS 611

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F +M   G  P   +F+++L A      +E  K +        ++   V +   +V   
Sbjct: 612 LFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGN--ALVHTY 669

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH-CNVELAERASKRLFELEPTNAGNY 496
            +   ++ A ++ +D+ +E     W  ++G    H C  +      + L E    +A  Y
Sbjct: 670 SKCGNVKYAKQVFDDM-VERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTY 728

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGL 524
           V +    A+    + VK V     + GL
Sbjct: 729 VSILSACASTGALEWVKEVHNHAVSAGL 756



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 132/502 (26%), Positives = 228/502 (45%), Gaps = 20/502 (3%)

Query: 20  NSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDV-LSIE--- 75
           N++ H+  K  S+     +    T   + S     +I  L + G  ++A  + L ++   
Sbjct: 359 NALVHMYAKSGSIDDARVVFDGMTERDIFSWTV--MIGGLAQHGRGQEAFSLFLQMQRNG 416

Query: 76  --PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
             PN T +   L   +    ++L     VH H  + GF  D  +   LI++Y+   S+DD
Sbjct: 417 CLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDD 476

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR VFD    R +  WNA+   L   G G E   ++ +M     G+  D  TY  +L   
Sbjct: 477 ARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQ--QEGLVPDSTTYLSLLNTH 534

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
            ++      L+   E+H   +  G      + +  I MY R G +  A  +F +++V++V
Sbjct: 535 GSTDA----LEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHV 590

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
            +W+AMI   A+     EAL LF +M  E     P++ T +++L A     ALE  K +H
Sbjct: 591 TTWNAMIGGAAQQRCGREALSLFLQMQREG--FIPDATTFINILSANVDEEALEWVKEVH 648

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
            +    GL   L V +ALV  Y++CG ++  + VFD M +R+V +W  +I     HG G 
Sbjct: 649 SHATDAGLVD-LRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGH 707

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
            A   F +M+  G+ P   ++VS+L AC+  G +E  K +        ++   +     +
Sbjct: 708 DAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLV-SDLRVGNAL 766

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC-NVELAERASKRLFELEPTN 492
           V +  +   +++A  + +D+ +E     W  ++G    H   +E  +   K   E    N
Sbjct: 767 VHMYAKCGSIDDARSVFDDM-VERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPN 825

Query: 493 AGNYVLLADVYAAADMWDEVKR 514
             +YV +    + A + DE +R
Sbjct: 826 GYSYVAVLTACSHAGLVDEGRR 847



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 128/231 (55%), Gaps = 6/231 (2%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           GI  D F+Y  +L+ C+        +   K++H  +++ G    +++   L+ +Y R G 
Sbjct: 113 GIAIDSFSYVNILQRCLKQED----ILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGR 168

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           +  A  VF ++  KN+  W+ MI  YA  G A +A+ ++ +M  E     PN +T +S+L
Sbjct: 169 LQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQ--PNEITYLSIL 226

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           +AC     L+ GK IH +I++ G  S + V +ALV MY +CG +E  Q +FD M +R+V+
Sbjct: 227 KACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVI 286

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           SW  +I     +G G +A  +F +M   G  P+  ++VS+L A + AG +E
Sbjct: 287 SWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALE 337


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/637 (37%), Positives = 379/637 (59%), Gaps = 24/637 (3%)

Query: 27  PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELL 86
           PKP      VS N+      L  +N   L + L K G+ R A         P+  T    
Sbjct: 250 PKPD----IVSWNAVIAGCVLHEKNDLAL-KLLGKMGSYRVA---------PSMFTLSSA 295

Query: 87  LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI 146
           L +C     +     +HS L     + D F+   LI++YS    + DAR VFD    + +
Sbjct: 296 LKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDV 355

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC-GFSLLKH 205
            VWN++    +  G   E + L+  M     G+  ++ T + +LK+   S   GF     
Sbjct: 356 IVWNSIISGYSNCGYDIEAMSLFTNM--YKEGLEFNQTTLSTILKSTAGSQANGFC---- 409

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
            +++H   ++ GY    ++  +L+D Y +   +  A  VF     +++V++++MI  Y++
Sbjct: 410 -EQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQ 468

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G+  EAL+++  + M+  D+ P++    S+  ACA L+A EQGK IH ++L+ GL S +
Sbjct: 469 YGLGEEALKMY--LRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDV 526

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
              ++LV MYA+CG ++   C+F+ +  R +VSW+++I     HG+G KA+Q+F +M+ +
Sbjct: 527 FAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKN 586

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ P+ I+ VSVL AC+HAGLV E +  F  M K   I P+ EHYACMVD+LGR  +L+E
Sbjct: 587 GILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDE 646

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A  +++++  +    VWG+LLG+ RIH N+EL   A++ L  LEP  +G ++LLA++YA+
Sbjct: 647 AMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYAS 706

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
             MWD V +V+R ++   ++K PG S IE+K K+Y+F+  D  HP+ ++++  L +L   
Sbjct: 707 TGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRER 766

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           +   GYVP  +  L+D++  EKE+++  HSEKLAVAFGLI T  G  IR+ KNLR+C DC
Sbjct: 767 LTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDC 826

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H+  KFISK A++EI+VRD+NRFHHFR+G CSCGDYW
Sbjct: 827 HTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 217/456 (47%), Gaps = 19/456 (4%)

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
           +++S   +P + +   +L +C      +  + VH +L   G+D DPF    L+++Y+   
Sbjct: 178 EMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSG 237

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
             + A  VF +  +  I  WNA+     L  + +  L+L  +M      +    FT +  
Sbjct: 238 CPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMG--SYRVAPSMFTLSSA 295

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           LKAC A      L+K G+++H+++++        +   LIDMY++ G +  A  VF  M 
Sbjct: 296 LKACAA----IGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMP 351

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            K+V+ W+++I+ Y+  G   EA+ LF  M  E  +   N  T+ ++L++ A   A    
Sbjct: 352 XKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEF--NQTTLSTILKSTAGSQANGFC 409

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           + +H   ++ G      V ++L+  Y +C  LE    VF+     D+V++ S+I++Y  +
Sbjct: 410 EQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQY 469

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G G +A++++  M    + P    F S+  AC++    E+GK +   + K  ++   V  
Sbjct: 470 GLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLS-DVFA 528

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
              +V++  +   +++A+ I  ++    G   W +++G    H +     R + +LF   
Sbjct: 529 GNSLVNMYAKCGSIDDASCIFNEISWR-GIVSWSAMIGGLAQHGH----GRKALQLFYQM 583

Query: 490 PTNA--GNYVLLADVYAA---ADMWDEVKRVKRLLE 520
             N    N++ L  V +A   A +  E +R   L+E
Sbjct: 584 LKNGILPNHITLVSVLSACNHAGLVTEARRFFGLME 619



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 190/411 (46%), Gaps = 56/411 (13%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  LLL  T    +S  + +H+ +          L  +L+N+YS       AR +   + 
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARIIRL---GLLGLRNRLVNLYSKCQCFRVARKLVIDSS 109

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC--------- 193
              +  W+AL       GRGEE L  Y  M   G   + + FT++ VLK C         
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGA--KGNEFTFSSVLKGCSLTRNLELG 167

Query: 194 --------------------------VASSC-GFSLLKHGKEIHASVLRHGYNGIVHIMT 226
                                     V ++C G     +G ++H  +++ GY+       
Sbjct: 168 KQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSAN 227

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA---CYARNGMAFEALELFREMIMES 283
            L+DMYA+ GC   A  VF ++   ++VSW+A+IA    + +N +A + L       M S
Sbjct: 228 ALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGK-----MGS 282

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
           + + P+  T+ S L+ACAA+  ++ G+ +H  +++  ++    V   L+ MY++CG L+ 
Sbjct: 283 YRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQD 342

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
            + VFD M  +DV+ WNS+IS Y   GY  +A+ +F  M   G+  +  +  ++L + + 
Sbjct: 343 ARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAG 402

Query: 404 A---GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           +   G  E+   +  S++  +     V +   ++D  G+   LE+AAK+ E
Sbjct: 403 SQANGFCEQVHTI--SIKSGYQYDGYVAN--SLLDSYGKCCLLEDAAKVFE 449



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 129/276 (46%), Gaps = 40/276 (14%)

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI-------- 280
           +++Y++  C   A  +    +  ++VSWSA+I+ Y +NG   EAL  + EM         
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 281 ------------------------------MESHDLCPNSVTMVSVLQACAALAALEQGK 310
                                         M S  + PN  ++ +VL ACA L     G 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +HGY+++ G DS     +AL+ MYA+ G  E    VF  + K D+VSWN++I+   +H 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
               A+++  +M  + V+PS  +  S L AC+  GLV+ G+ L  ++ K  M  P     
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDM-EPDSFVG 327

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
             ++D+  +   L++ A+++ DL       VW S++
Sbjct: 328 VGLIDMYSKCGLLQD-ARMVFDLMPXKDVIVWNSII 362


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/530 (43%), Positives = 339/530 (63%), Gaps = 39/530 (7%)

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           LE Y RM+  G  +  D FT  +VLK+C       S +  G+ +H   LR G  G  ++ 
Sbjct: 92  LEAYARMHFLG--LLGDNFTLPFVLKSCA----DLSRVCMGRCVHGQGLRVGLEGDFYVG 145

Query: 226 TTLIDMYARFGCV--------------------MYAGF-----------VFSQMAVKNVV 254
            +LIDMY + G +                    + AG+           +F +M  +N+V
Sbjct: 146 ASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIV 205

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           SW+AMI+ Y +NG A +AL LF EM+ +  ++ PN VT+VSVL ACA  AALE+G+ IH 
Sbjct: 206 SWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHD 265

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM--DKRDVVSWNSLISSYGVHGYG 372
           +    GL     V +AL  MYA+C  L   +C FD +  + +++++WN++I++Y  HG G
Sbjct: 266 FANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCG 325

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +A+ IF+ M+  GV P  ++F+ +L  CSH+GL++ G   F  M   H + P VEHYAC
Sbjct: 326 VEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYAC 385

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
           +VDLLGRA +L EA ++I  + ++ GP VWG+LL +CR H N+E+AE A++RLF LEP N
Sbjct: 386 VVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDN 445

Query: 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQF 552
           +GNYVLL+++YA A MW+EVK+++ LL+ +G++K PG S IE+  K + F+  D+ HPQ 
Sbjct: 446 SGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQA 505

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
           ++++  L  L  ++K  GY+P T  VL+D+  EEKE  +  HSEKLA+AFGL+NT  G  
Sbjct: 506 KEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVV 565

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +R+TKNLR+C DCH+ TKFISK   +EI+VRD+NRFH F++G CSCGDYW
Sbjct: 566 LRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 55  LIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           +I    + G   QAL +         E  P   T   +L +C    +L     +H     
Sbjct: 210 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANG 269

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR--RTIYVWNALFRALTLAGRGEEVL 166
            G   +  + T L  +Y+   S+ +AR  FD   +  + +  WN +  A    G G E +
Sbjct: 270 IGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAV 329

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            ++  M     G++ D  T+  +L  C  S    + L H  ++      H     V    
Sbjct: 330 SIFENM--LRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTI---HSVEPRVEHYA 384

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMI-ACYARNGMAFEALELFREMIMESH 284
            ++D+  R G ++ A  + SQM ++   S W A++ AC +   +    L   R  ++E  
Sbjct: 385 CVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPD 444

Query: 285 D 285
           +
Sbjct: 445 N 445


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/614 (38%), Positives = 362/614 (58%), Gaps = 46/614 (7%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+S    G  + AL V     N    P  +TY  +L +C+   +L   L +H  +  
Sbjct: 106 NVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVK 165

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G D + ++   L+++Y     +D AR V D+   R +  WN++       GR  + L+L
Sbjct: 166 LGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKL 225

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            R M      ++ D  T   +L A   +SC                              
Sbjct: 226 CREMEDLK--LKPDAGTMGSLLPAVTNTSCDN---------------------------- 255

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
                    V+Y   +F ++  K+++SW+ MIA Y  N M  EA++L+ +M  + H + P
Sbjct: 256 ---------VLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQM--QVHGVEP 304

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           ++V++ SVL AC  L+A   G+ IH Y+ R+ L   L + +AL+ MYA+CG L+  + VF
Sbjct: 305 DAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVF 364

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M  RDVVSW S+IS+YG+ G G  A+ +FK+M   G +P  I+FVSVL ACSHAGLV+
Sbjct: 365 DQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVD 424

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG+  F  M  E+ I P +EHY CMVDLLGRA K++EA  +   + +EP  +VWGSLL +
Sbjct: 425 EGRYCFNLM-AEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSA 483

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CR++ ++ +A  A+  LF+L P  +G YVLL+++YA A  W +V+ V+ ++ ++G++K+P
Sbjct: 484 CRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIP 543

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +E+   +Y+F++ D+ H Q ++++  L  L   MKE GY+P+T   L+D++ E+KE
Sbjct: 544 GNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKE 603

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSEKLA+ F ++NT  G TIRITKN+R+C DCH  TK ISK A +EI++RD +RF
Sbjct: 604 CHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRF 663

Query: 649 HHFRNGVCSCGDYW 662
           HHFR+GVCSCGDYW
Sbjct: 664 HHFRDGVCSCGDYW 677



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 109/202 (53%), Gaps = 4/202 (1%)

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+  YA  G   Y   +F ++  KNVV ++ MI  Y  NG+  +AL +F+   M +    
Sbjct: 77  LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFK--TMANQGFY 134

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P++ T   VL+AC+    L  G  IHG +++ GLD  L + + LV+MY +C  L+  + V
Sbjct: 135 PDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRV 194

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL- 406
            D M  RD+VSWNS+++ Y  +G    A+++ +EM    + P   +  S+L A ++    
Sbjct: 195 LDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCD 254

Query: 407 -VEEGKMLFESMRKEHMIRPSV 427
            V   K +F  ++++ +I  +V
Sbjct: 255 NVLYVKDMFVKLKEKSLISWNV 276


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/613 (39%), Positives = 372/613 (60%), Gaps = 15/613 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN---PTQHTYELLLLSCTHHNSLSDALNVHSHLTDN 109
           N L+ +  + G    AL V    P+   P   T+ L L +C     L  A +V       
Sbjct: 77  NGLLSAHSRAGAPGAALRVFRALPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAFAA 136

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           G+  D F+ + L+++YS   ++++A  VFD   R+    W+ +      AGR  E L +Y
Sbjct: 137 GYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMY 196

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
            RM   G  +  D      V++AC+++       + G  +H  +LRH     V   T+L+
Sbjct: 197 SRMREHG--VSDDEVVMVGVIQACMSTGNA----RIGASVHGRLLRHCMRMDVVTTTSLV 250

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
            MYA+ G +  A  VF  M  +N V+WSA+I+ +A+NG A EAL+LFRE+  ++  L P 
Sbjct: 251 SMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFREL--QADGLQPC 308

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
           S  +VS L ACA++  L+ GK IHG+ILRR L+    + +A++ MY++CG LE  + +F+
Sbjct: 309 SWALVSALLACASVGFLKLGKSIHGFILRR-LEWQCILGTAVLDMYSKCGSLESARKLFN 367

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
            +  RD+V WN++I+  G HG G  A+ +F+E+   G+ P   +F S+L A SH+GLVEE
Sbjct: 368 KLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEE 427

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           GK  F+ M KE  I P+ +HY C+VDLL R+  +EEA  ++  ++ EP   +W  LL  C
Sbjct: 428 GKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGC 487

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
             +  +EL E  +K++ EL P + G   L++++YAAA  WD+V+ +++L++  G +KVPG
Sbjct: 488 LNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPG 547

Query: 530 RSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKER 589
            S IEVK   ++FV  D+ HPQ  ++  ++  L++EM++ GYVP+T+ V +DLD   +++
Sbjct: 548 YSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPRTEFVYHDLD---EDQ 604

Query: 590 IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
           ++  HSE+LA+AFGL+NTS G  + I KNLR+C DCH   K+ISK  ++EI+VRD  RFH
Sbjct: 605 LLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFH 664

Query: 650 HFRNGVCSCGDYW 662
           HF++G CSCGDYW
Sbjct: 665 HFKDGACSCGDYW 677


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 255/640 (39%), Positives = 376/640 (58%), Gaps = 31/640 (4%)

Query: 33  CCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLL 88
           C   S+N+ +TP        N  ++ L K+    QAL +    L     P   T+   L 
Sbjct: 5   CKSKSMNALSTPW-------NTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALK 57

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT--RRRTI 146
           SC   +        H  +T  G   +PF+ T LI++Y     VD+AR VF++    R+  
Sbjct: 58  SCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLT 117

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206
             +NAL        +  E + L+R+MN  G  + S   T   ++ ACV+       L+ G
Sbjct: 118 VCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNS--VTLLGLIPACVSPIN----LELG 171

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
             +H S L++G++  V ++   I MY + G V YA  +F +M VK ++SW+AM++ YA+N
Sbjct: 172 SSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQN 231

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           G+A   LEL+R M M  + + P+ VT+V VL +CA L A   G  +   I   G  S   
Sbjct: 232 GLATNVLELYRNMDM--NGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPF 289

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           + +AL+ MYARCG L   Q VFD M +R +VSW ++I  YG+HG+G  A+Q+FKEMI  G
Sbjct: 290 LNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSG 349

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           + P   +FV VL ACSHAGL ++G   F+ M++ + + P  EHY+CMVDLLGRA +L+EA
Sbjct: 350 IEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEA 409

Query: 447 AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
             +IE + I+P   VWG+LLG+C+IH NVELAE A +R+ ELEP N G YVLL+++Y+ A
Sbjct: 410 QTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNA 469

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
           +    V R++ +++ + L+K PG S +E+K +++ F+  D  H Q ++++ +L  L A +
Sbjct: 470 NNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAII 529

Query: 567 KEKGYVPQTKVVLYDLDAEEKERI----VLGHSEKLAVAFGLINTSKGETIRITKNLRLC 622
            ++   P+        + EE  +     V  HSEKLAVAFGL+NT+ G  + I KNLR+C
Sbjct: 530 MQEFGKPEKD------NREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRIC 583

Query: 623 EDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           EDCH F K +SK  ++++ VRD  RFHHFRNG CSC DYW
Sbjct: 584 EDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/617 (37%), Positives = 371/617 (60%), Gaps = 22/617 (3%)

Query: 55  LIQSLCKQGNLRQALDVLSI----EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I  L +QG+ ++A ++  +       P Q T   L+ + T+   L    ++H  +   G
Sbjct: 123 MITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYG 182

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL---TLAGRGEEVLE 167
           F+ D  +   LI +Y     V+D   VF+      +  WNAL          GRG  +  
Sbjct: 183 FESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIF- 241

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL--KHGKEIHASVLRHGYNGIVHIM 225
            Y+ +     G + + FT+  VL++C       SLL  + GK++HA ++++  +    + 
Sbjct: 242 -YQMLL---EGFKPNMFTFISVLRSCS------SLLDPEFGKQVHAHIIKNSSDDDDFVG 291

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           T L+DMYA+  C+  AG  F ++  +++ SW+ +I+ YA+   A +A++ FR+M  E   
Sbjct: 292 TALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREG-- 349

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + PN  T+ S L  C+ +A LE G+ +H   ++ G    + V SALV +Y +CG +E  +
Sbjct: 350 IKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAE 409

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +F  +  RD+VSWN++IS Y  HG G KA++ F+ M+  G+ P   +F+ VL ACS  G
Sbjct: 410 AIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMG 469

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           LVEEGK  F+SM K + I PS+EHYACMVD+LGRA K  E    IE++ + P   +W ++
Sbjct: 470 LVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETV 529

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           LG+C++H NV+  E+A+K+LFE+EP    +Y+LL++++A+   WD+V+ ++ L+ +RG++
Sbjct: 530 LGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIK 589

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K PG S +EV  +++ F+S D  HP+  +++A L  L   +   GYVP+T+VVL+++  +
Sbjct: 590 KEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNK 649

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           EK   +  HSE+LA++F L++T+  + IRI KNLR+CEDCH F K IS   N+EI+VRD+
Sbjct: 650 EKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDI 709

Query: 646 NRFHHFRNGVCSCGDYW 662
            RFHHF+ G CSC D W
Sbjct: 710 RRFHHFKRGTCSCQDRW 726



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 209/444 (47%), Gaps = 26/444 (5%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+    + G+ ++ L +       E   ++ T   +L  C +  SL +   +H+    
Sbjct: 20  NALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHALALR 79

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +G + D FL   L+++YS   +V DA  VF K R   +  W+A+   L   G G+E  EL
Sbjct: 80  SGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAEL 139

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M   G   R ++FT    L + V+++     L++G+ IH  + ++G+     +   L
Sbjct: 140 FHLMRRKGA--RPNQFT----LSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPL 193

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MY +  CV     VF  M   ++VSW+A+++ +  +        +F +M++E     P
Sbjct: 194 IMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFK--P 251

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N  T +SVL++C++L   E GK +H +I++   D    V +ALV MYA+   LE     F
Sbjct: 252 NMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAF 311

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D +  RD+ SW  +IS Y       KA++ F++M   G+ P+  +  S L  CSH   +E
Sbjct: 312 DRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLE 371

Query: 409 EGKMLFESMRKEHMIRPSVEHY------ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
            G+ L       H +     H+      + +VDL G+   +E A  I + L I      W
Sbjct: 372 NGRQL-------HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL-ISRDIVSW 423

Query: 463 GSLLGSCRIHCNVELAERASKRLF 486
            +++     H   E A  A + + 
Sbjct: 424 NTIISGYSQHGQGEKALEAFRMML 447



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 2/168 (1%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +F  M  KN VSW+A++  YA+ G   + L+LF +M  +  +   +  T+ +VL+ CA  
Sbjct: 7   LFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKM--KECETKFSKFTLSTVLKGCANT 64

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
            +L +GK++H   LR G +    +  +LV MY++CG +     VF  +   DVV+W+++I
Sbjct: 65  GSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMI 124

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           +     G+G +A ++F  M   G  P+  +  S++   ++ G +  G+
Sbjct: 125 TGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQ 172



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +EL + +F  M +++ VSWN+L++ Y   G G K +++F +M       S  +  +VL  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 401 CSHAGLVEEGKMLFE-SMRKEHMIRPSVEHYAC-MVDLLGRANKLEEAAKIIEDLRIEPG 458
           C++ G + EGK+L   ++R    I    E   C +VD+  +   + +A K+   +R  P 
Sbjct: 61  CANTGSLREGKVLHALALRSGCEID---EFLGCSLVDMYSKCGTVYDALKVFTKIR-NPD 116

Query: 459 PKVWGSLL 466
              W +++
Sbjct: 117 VVAWSAMI 124


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/601 (38%), Positives = 373/601 (62%), Gaps = 11/601 (1%)

Query: 65  LRQALDVLSIEPNPTQ-HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
           LR+AL  +++    T    Y  +L  C    ++ +   VH+H+    +    +L T+LI 
Sbjct: 42  LREALLHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIV 101

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
            Y   DS+ DARHVFD    R +  W A+  A +  G   + L L+ +M  +GT    + 
Sbjct: 102 FYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGT--EPNE 159

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           FT+  VL +C+ SS GF L   G++IH+ +++  Y   V++ ++L+DMYA+ G +  A  
Sbjct: 160 FTFATVLTSCIGSS-GFVL---GRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARG 215

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +F  +  ++VVS +A+I+ YA+ G+  EALELFR +  E   +  N VT  SVL A + L
Sbjct: 216 IFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREG--MQSNYVTYTSVLTALSGL 273

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
           AAL+ GK +H ++LR  + S + + ++L+ MY++CG L   + +FD + +R V+SWN+++
Sbjct: 274 AALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAML 333

Query: 364 SSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
             Y  HG G + +++F  MI  + V P  ++ ++VL  CSH GL ++G  +F  M    +
Sbjct: 334 VGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKI 393

Query: 423 -IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
            ++P  +HY C+VD+LGRA ++E A + ++ +  EP   +WG LLG+C +H N+++ E  
Sbjct: 394 SVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFV 453

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS 541
             +L ++EP NAGNYV+L+++YA+A  W++V+ ++ L+  + + K PGRS IE+ + +++
Sbjct: 454 GHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHT 513

Query: 542 FVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVA 601
           F + D  HP+ E++ A +  LSA  KE GYVP    VL+D+D E+KE+I+L HSEKLA+ 
Sbjct: 514 FHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALT 573

Query: 602 FGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
           FGLI T +   IR+ KNLR+C DCH+F K+ SK   +E+ +RD NRFH    G CSCGDY
Sbjct: 574 FGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDY 633

Query: 662 W 662
           W
Sbjct: 634 W 634


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/638 (39%), Positives = 376/638 (58%), Gaps = 33/638 (5%)

Query: 53   NELIQSLCKQGNLRQALDVLSI----EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
            N +I SL +     +AL  + +       P   T   +L +C+    L     +H +   
Sbjct: 503  NTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALR 562

Query: 109  NG-FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            NG   ++ F+ T L+++Y +       R VFD   RRT+ VWNAL          ++ L 
Sbjct: 563  NGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALR 622

Query: 168  LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
            L+  M  + +    +  T+  VL ACV   C     K G  IH  +++ G+    ++   
Sbjct: 623  LFVEMI-SESEFCPNATTFASVLPACV--RCKVFSDKEG--IHGYIVKRGFGKDKYVQNA 677

Query: 228  LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM-------- 279
            L+DMY+R G V  +  +F +M  +++VSW+ MI      G   +AL L  EM        
Sbjct: 678  LMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDG 737

Query: 280  ---IMESHD-----LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
                ++  D       PNSVT+++VL  CAALAAL +GK IH Y +++ L   + V SAL
Sbjct: 738  SDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSAL 797

Query: 332  VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG----- 386
            V MYA+CG L L   VFD M  R+V++WN LI +YG+HG G +A+++F+ M   G     
Sbjct: 798  VDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNRE 857

Query: 387  -VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
             + P+ ++++++  ACSH+G+V+EG  LF +M+  H + P  +HYAC+VDLLGR+ +++E
Sbjct: 858  VIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKE 917

Query: 446  AAKIIEDLRIEPGP-KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
            A ++I  +         W SLLG+CRIH +VE  E A+K LF LEP  A +YVL++++Y+
Sbjct: 918  AYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYS 977

Query: 505  AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
            +A +WD+   V++ ++  G++K PG S IE   +++ F+S D  HPQ ++LH  L  LS 
Sbjct: 978  SAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQ 1037

Query: 565  EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
             M+++GYVP    VL+++D EEKE ++ GHSE+LA+AFGL+NT  G TIR+ KNLR+C D
Sbjct: 1038 RMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCND 1097

Query: 625  CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            CH  TK ISK  ++EI++RDV RFHHF NG CSCGDYW
Sbjct: 1098 CHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 144/287 (50%), Gaps = 10/287 (3%)

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           +   L+N+Y     +  AR VFD    R    WN++   L      E  L L+R M    
Sbjct: 369 VANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLM--LS 426

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
             +    FT   V  AC     G  L   GK++HA  LR+G +   +    L+ MYAR G
Sbjct: 427 ENVDPTSFTLVSVAHACSHVRGGVRL---GKQVHAYTLRNG-DLRTYTNNALVTMYARLG 482

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            V  A  +F     K++VSW+ +I+  ++N    EAL     MI++   + P+ VT+ SV
Sbjct: 483 RVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDG--VRPDGVTLASV 540

Query: 297 LQACAALAALEQGKMIHGYILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           L AC+ L  L  G+ IH Y LR G L     V +ALV MY  C + + G+ VFD + +R 
Sbjct: 541 LPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRT 600

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGAC 401
           V  WN+L++ Y  + +  +A+++F EMI      P+  +F SVL AC
Sbjct: 601 VAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPAC 647



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 161/330 (48%), Gaps = 15/330 (4%)

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           RR+   W  L R+ T +    + +  Y  M         D F +  VLKA  A       
Sbjct: 292 RRSPSQWIDLLRSQTHSSSFRDAISTYAAM--LAAPAPPDNFAFPAVLKAAAA----VHD 345

Query: 203 LKHGKEIHASVLRHGYN--GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           L  GK+IHA V + G+     V +  +L++MY + G +  A  VF  +  ++ VSW++MI
Sbjct: 346 LCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMI 405

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL-AALEQGKMIHGYILRR 319
           A   R      +L LFR M+ E+ D  P S T+VSV  AC+ +   +  GK +H Y LR 
Sbjct: 406 ATLCRFEEWELSLHLFRLMLSENVD--PTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRN 463

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           G D      +ALVTMYAR G++   + +F   D +D+VSWN++ISS   +    +A+   
Sbjct: 464 G-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYV 522

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHMIRPSVEHYACMVDLLG 438
             MI  GV P  ++  SVL ACS    +  G+ +   ++R   +I  S    A +VD+  
Sbjct: 523 YLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTA-LVDMYC 581

Query: 439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
              K  +  +++ D  +     VW +LL  
Sbjct: 582 NC-KQPKKGRLVFDGVVRRTVAVWNALLAG 610


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/585 (40%), Positives = 349/585 (59%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+  +L +C     L   + +H+ +   GFD D F+ T L+ +Y+    ++DA  V
Sbjct: 110 PNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKV 169

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    + +  W A+       G+  E ++++RR+      +  D FT   VL AC    
Sbjct: 170 FDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRL--LEMNLAPDSFTIVRVLSACTQ-- 225

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  G+ IH  ++  G    V + T+L+DMYA+ G +  A  VF  M  K++VSW 
Sbjct: 226 --LGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWG 283

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI  YA NG+  EA++LF +M  +  ++ P+  T+V VL ACA L ALE G+ + G + 
Sbjct: 284 AMIQGYALNGLPKEAIDLFLQM--QRENVKPDCYTVVGVLSACARLGALELGEWVSGLVD 341

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R        + +AL+ +YA+CG +     VF  M ++D V WN++IS   ++GY   +  
Sbjct: 342 RNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFG 401

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F ++   G+ P   +F+ +L  C+HAGLV+EG+  F SM +   + PS+EHY CMVDLL
Sbjct: 402 LFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLL 461

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA  L+EA ++I ++ +E    VWG+LLG+CRIH + +LAE A K+L ELEP N+GNYV
Sbjct: 462 GRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYV 521

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++Y+A   WDE  +V+  +  + +QK PG S IEV   ++ F+  D++HP  E+++A
Sbjct: 522 LLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYA 581

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  L+ +MK  GYVP T  VL+D++ EEKE  +  HSEKLA+AFGLI+ +    IR+ K
Sbjct: 582 KLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVK 641

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH   K IS    +EI VRD NRFH FR G CSC DYW
Sbjct: 642 NLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 119/402 (29%), Positives = 209/402 (51%), Gaps = 12/402 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P     E+  L     NS     ++H+HL   G   D +L+  ++     F   +  R +
Sbjct: 9   PISKGLEIKKLILQGFNSFKHLKHLHAHLLRFGLCHDNYLLNMILRCSFDFSDTNYTRFL 68

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F + ++  I++WN + R L      ++ +E Y  M     G   + FT+ +VLKAC    
Sbjct: 69  FHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMR--SEGFLPNNFTFPFVLKACAR-- 124

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L+ G +IH  V++ G++  V + T+L+ +YA+ G +  A  VF  +  KNVVSW+
Sbjct: 125 --LLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWT 182

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           A+I+ Y   G   EA+++FR ++    +L P+S T+V VL AC  L  L  G+ IH  I+
Sbjct: 183 AIISGYIGVGKFREAIDMFRRLL--EMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIM 240

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
             G+   + V ++LV MYA+CG +E  + VFD M ++D+VSW ++I  Y ++G   +AI 
Sbjct: 241 EMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAID 300

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM-RKEHMIRPSVEHYACMVDL 436
           +F +M    V P   + V VL AC+  G +E G+ +   + R E +  P +     ++DL
Sbjct: 301 LFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLG--TALIDL 358

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
             +   +  A ++ + ++ E    VW +++    ++  V+++
Sbjct: 359 YAKCGSMSRAWEVFKGMK-EKDRVVWNAIISGLAMNGYVKIS 399



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 150/323 (46%), Gaps = 18/323 (5%)

Query: 55  LIQSLCKQGNLRQALD----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I      G  R+A+D    +L +   P   T   +L +CT    L+    +H  + + G
Sbjct: 184 IISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMG 243

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
             ++ F+ T L+++Y+   +++ AR VFD    + I  W A+ +   L G  +E ++L+ 
Sbjct: 244 MVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFL 303

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           +M      ++ D +T   VL AC         L+ G+ +   V R+ +     + T LID
Sbjct: 304 QMQ--RENVKPDCYTVVGVLSACAR----LGALELGEWVSGLVDRNEFLYNPVLGTALID 357

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           +YA+ G +  A  VF  M  K+ V W+A+I+  A NG    +  LF +  +E   + P+ 
Sbjct: 358 LYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQ--VEKLGIKPDG 415

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALVTMYARCGKLELGQCV 347
            T + +L  C     +++G+     + R    S+ P +     +V +  R G L+    +
Sbjct: 416 NTFIGLLCGCTHAGLVDEGRRYFNSMYR--FFSLTPSIEHYGCMVDLLGRAGLLDEAHQL 473

Query: 348 FDHMD-KRDVVSWNSLISSYGVH 369
             +M  + + + W +L+ +  +H
Sbjct: 474 IRNMPMEANAIVWGALLGACRIH 496


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/616 (38%), Positives = 378/616 (61%), Gaps = 15/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+   +  + + AL + S       +P   T+  LL +C+  + L     VH+ +  
Sbjct: 88  NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWNALFRALTLAGRGEEVL 166
            GFD D F+   LI +Y+    +  AR VF+      RTI  W A+  A    G   E L
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           E++  M      ++ D      VL A    +C    LK G+ IHASV++ G      ++ 
Sbjct: 208 EIFSHMRKMD--VKPDWVALVSVLNAF---TC-LQDLKQGRSIHASVVKMGLEIEPDLLI 261

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +L  MYA+ G V  A  +F +M   N++ W+AMI+ YA+NG A EA+++F EMI  + D+
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMI--NKDV 319

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+++++ S + ACA + +LEQ + ++ Y+ R      + + SAL+ M+A+CG +E  + 
Sbjct: 320 RPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARL 379

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VFD    RDVV W+++I  YG+HG   +AI +++ M   GV P+ ++F+ +L AC+H+G+
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGM 439

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V EG   F  M  +H I P  +HYAC++DLLGRA  L++A ++I+ + ++PG  VWG+LL
Sbjct: 440 VREGWWFFNLM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +C+ H +VEL E A+++LF ++P+N G+YV L+++YAAA +WD V  V+  ++ +GL K
Sbjct: 499 SACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNK 558

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S +EV+ ++ +F   D+ HP++E++   +  + + +KE G+V      L+DL+ EE
Sbjct: 559 DVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEE 618

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
            E  +  HSE++A+A+GLI+T +G  +RITKNLR C +CH+ TK ISK  ++EI+VRD N
Sbjct: 619 AEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTN 678

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF++GVCSCGDYW
Sbjct: 679 RFHHFKDGVCSCGDYW 694



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/392 (32%), Positives = 211/392 (53%), Gaps = 15/392 (3%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  L+ S TH   L     +H+ L   G     FL+TKLI+  S F  +  AR VFD   
Sbjct: 24  YASLIDSATHKAQLK---QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLP 80

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           R  I+ WNA+ R  +     ++ L +Y  M      +  D FT+ ++LKAC     G S 
Sbjct: 81  RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQ--LARVSPDSFTFPHLLKAC----SGLSH 134

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--KNVVSWSAMI 260
           L+ G+ +HA V R G++  V +   LI +YA+   +  A  VF  + +  + +VSW+A++
Sbjct: 135 LQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIV 194

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           + YA+NG   EALE+F    M   D+ P+ V +VSVL A   L  L+QG+ IH  +++ G
Sbjct: 195 SAYAQNGEPMEALEIFSH--MRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           L+    ++ +L TMYA+CG++   + +FD M   +++ WN++IS Y  +GY  +AI +F 
Sbjct: 253 LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           EMI   V P  IS  S + AC+  G +E+ + ++E + +    R  V   + ++D+  + 
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDY-RDDVFISSALIDMFAKC 371

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
             + E A+++ D  ++    VW +++    +H
Sbjct: 372 GSV-EGARLVFDRTLDRDVVVWSAMIVGYGLH 402


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/613 (39%), Positives = 355/613 (57%), Gaps = 13/613 (2%)

Query: 55   LIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
            +I +L + G   +AL +     N    P + T   +L +C   + L    ++H       
Sbjct: 401  IIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKAD 460

Query: 111  FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
             D D    T L+++Y+       A   F++   R I  WN+L       G     ++++ 
Sbjct: 461  MDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFY 520

Query: 171  RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            ++  +   I  D  T   V+ AC       + L  G  IH  +++ G+    H+   LID
Sbjct: 521  KLRLSA--INPDAGTMVGVVPACAL----LNDLDQGTCIHGLIVKLGFESDCHVKNALID 574

Query: 231  MYARFGCVMYAGFVFSQMA-VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
            MYA+ G +  A F+F++    K+ V+W+ +IA Y +NG A EA+  F +M +E  +  PN
Sbjct: 575  MYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLE--NFHPN 632

Query: 290  SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
            SVT VSVL A A LAA  +G   H  I++ G  S   V ++L+ MYA+CG+L   + +F+
Sbjct: 633  SVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFN 692

Query: 350  HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
             MD +D VSWN+++S Y VHG+G +AI +F  M    V    +SFVSVL AC H GLVEE
Sbjct: 693  EMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEE 752

Query: 410  GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
            G+ +F SM  ++ I+P +EHYACMVDLLGRA   +E    I+ + +EP   VWG+LLGSC
Sbjct: 753  GRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSC 812

Query: 470  RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
            R+H NV+L E A   L +LEP N  ++V+L+ +YA +  W +  + +  +   GL+K PG
Sbjct: 813  RMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPG 872

Query: 530  RSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKER 589
             S +E+K K+++F   D+ HPQ E +H L   L  +M++ GYVP    VL +++ E+KE 
Sbjct: 873  CSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEM 932

Query: 590  IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
             +  HSE+LA+ F L+NT  G TI+I KNLR+C DCH+ TKFISK   + I+VRD  RFH
Sbjct: 933  FLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFH 992

Query: 650  HFRNGVCSCGDYW 662
            HF +G+CSC DYW
Sbjct: 993  HFEDGICSCNDYW 1005



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 192/363 (52%), Gaps = 14/363 (3%)

Query: 53  NELIQSLCKQGNLRQALDVL--SIEPN--PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I++  +     +AL++    +E    P ++T+  +L +CT   +L + +  H  +  
Sbjct: 98  NSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDR 157

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G ++D F+   L+++YS    +  AR VFDK  +R +  WNA+   L+ +    E ++ 
Sbjct: 158 RGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDF 217

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +R M   G    S      +         C  S ++  + IH  V R  ++  V     L
Sbjct: 218 FRSMQLVGVEPSSVSLLNLF------PGICKLSNIELCRSIHGYVFRRDFSSAVS--NGL 269

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           ID+Y++ G V  A  VF QM  ++ VSW  M+A YA NG   E LELF +M + +  +  
Sbjct: 270 IDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRI-- 327

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N V+ VS   A A    LE+GK IHG  L++ +DS + V + L+ MYA+CG+ E  + +F
Sbjct: 328 NKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLF 387

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             +  RD+V+W+++I++    GY  +A+ +F+EM    + P+ ++ +S+L AC+   L++
Sbjct: 388 WGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLK 447

Query: 409 EGK 411
            GK
Sbjct: 448 LGK 450


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/605 (38%), Positives = 366/605 (60%), Gaps = 12/605 (1%)

Query: 61  KQGNLRQALDVLSIEP---NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL 117
           ++G+   AL V    P    P   T+ L L +C     L    +V     D G+  D F+
Sbjct: 86  RRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFV 145

Query: 118 VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177
            + L+++Y+ + ++ DA  VF +  RR    W+ +      AG+  + +++YRRM   G 
Sbjct: 146 CSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDG- 204

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
            ++ D      V++AC A+      ++ G  +H  +LRHG    V   T+L+DMYA+ G 
Sbjct: 205 -VKGDEVVMIGVIQACTAARN----VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGL 259

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           +  A  VF  M  +N VSWSAMI+ +A+NG + EAL LFR M  ++  + P+S  +VS L
Sbjct: 260 LDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNM--QASGIQPDSGALVSAL 317

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            AC+ +  L+ G+ +HG+I+RR  D    + +A + MY++CG L   Q +F+ +  RD++
Sbjct: 318 LACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLI 376

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
            WN++I+  G HG G  A+ +F+EM   G+ P   +F S+L A SH+GLVEEGK+ F  M
Sbjct: 377 LWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRM 436

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
                I P+ +HY C+VDLL R+  +EEA+ ++  ++ EP   +W +LL  C  +  +EL
Sbjct: 437 VNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLEL 496

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
            E  +  + EL+P + G   L++++YAA   WD+V++V++L++  G +K+PG S IE++ 
Sbjct: 497 GESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRG 556

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
             + FV  D+ HPQ E++ + +  L  EM++ GY+P+T+ V +DL+ E KE+ +  HSE+
Sbjct: 557 TRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSER 616

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AFGL+NT  G  + I KNLR+C DCH   K+ISK A++EI+VRD  RFHHF++GVCS
Sbjct: 617 LAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCS 676

Query: 658 CGDYW 662
           C DYW
Sbjct: 677 CRDYW 681


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/661 (36%), Positives = 386/661 (58%), Gaps = 53/661 (8%)

Query: 46  SLSSRNK---NELIQSLCKQGNLRQALDVL-----SIEPNPTQHTYELLLLSCTHHNSLS 97
           SL +R++   N +I +  + G+   AL +       ++PN T  TY  ++   +    L 
Sbjct: 167 SLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNST--TYINVISGFSTPEVLP 224

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALT 157
           +   +H+ +  NGFD D  + T LIN+Y    S  +AR VFDK ++R +  WN +     
Sbjct: 225 EGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV 284

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
             G   E LELY++++  G   +  + T+  +L AC +       L  G+ +H+ +L  G
Sbjct: 285 QNGDFHEALELYQKLDMEG--FKRTKATFVSILGACSS----VKALAQGRLVHSHILERG 338

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS-------------------- 257
            +  V + T L++MYA+ G +  A  VF+ M  ++ V+WS                    
Sbjct: 339 LDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARK 398

Query: 258 --------------AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
                         AMI  Y +NG A  A+++FREM   +  L P++VT ++VL+ACA+L
Sbjct: 399 VFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAA-GLKPDAVTFIAVLEACASL 457

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
             L + K +H  I    L+S + V + L+ MYARCG LE  + +F    ++ VVSW +++
Sbjct: 458 GRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMV 517

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           +++  +G   +A+ +F+EM   GV P  +++ S+L  C+H G +E+G   F  M + H +
Sbjct: 518 AAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGL 577

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
            P+ +H+A MVDLLGR+ +L +A +++E +  EP P  W + L +CRIH  +EL E A++
Sbjct: 578 APTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAE 637

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
           R++EL+P++   Y+ ++++YAA  MW++V  V++ +E RGL+K+PG S IEV  K++ F 
Sbjct: 638 RVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFS 697

Query: 544 SVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFG 603
           S  ++HP+ +++   L  L   M+  GYVP TK VL+D+   EKE ++L HSEK+A+AFG
Sbjct: 698 SGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFG 757

Query: 604 LINT-SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF-RNGVCSCGDY 661
           L+++   GE IR+ KNLR+C DCH+ TKFI++ A ++I++RD NRFH F  +G CSCGDY
Sbjct: 758 LVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDY 817

Query: 662 W 662
           W
Sbjct: 818 W 818



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 128/397 (32%), Positives = 207/397 (52%), Gaps = 16/397 (4%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           ++  P   T+  +L SC+    +++   +H  +  + F++D  +   LI++Y   DS+ D
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 134 ARHVFDKT--RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
           AR VF+    R+R +  WNA+  A    G   E L LY RMN  G G  +D  T+  VL 
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLG--TDHVTFVSVLG 118

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           AC       S L  G+EIH  V   G +    +   L+ MYARFG V  A  +F  +  +
Sbjct: 119 AC-------SSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR 171

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +  SW+A+I  ++++G    AL +F+EM     D+ PNS T ++V+   +    L +G+ 
Sbjct: 172 DETSWNAVILAHSQSGDWSGALRIFKEM---KCDMKPNSTTYINVISGFSTPEVLPEGRK 228

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           IH  I+  G DS L V +AL+ MY +CG     + VFD M KRD+VSWN +I  Y  +G 
Sbjct: 229 IHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGD 288

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             +A+++++++   G   +  +FVS+LGACS    + +G+ L  S   E  +   V    
Sbjct: 289 FHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGR-LVHSHILERGLDSEVAVAT 347

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            +V++  +   LEEA K+   ++       W +L+G+
Sbjct: 348 ALVNMYAKCGSLEEARKVFNAMKNRDAV-AWSTLIGA 383



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/440 (30%), Positives = 229/440 (52%), Gaps = 58/440 (13%)

Query: 53  NELIQSLCKQGNLRQALDV---LSIEPNPTQH-TYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I +  + G+  +AL +   ++++   T H T+  +L +C+   SL+    +H+ +  
Sbjct: 79  NAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREIHNRVFY 135

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +G D    L   L+ +Y+ F SV DA+ +F   + R    WNA+  A + +G     L +
Sbjct: 136 SGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRI 195

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS---LLKHGKEIHASVLRHGYNGIVHIM 225
           ++ M      ++ +  TY  V+        GFS   +L  G++IHA ++ +G++  + + 
Sbjct: 196 FKEMK---CDMKPNSTTYINVIS-------GFSTPEVLPEGRKIHAEIVANGFDSDLVVA 245

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           T LI+MY + G    A  VF +M  +++VSW+ MI CY +NG   EALEL++++ ME   
Sbjct: 246 TALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFK 305

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
                 T VS+L AC+++ AL QG+++H +IL RGLDS + V +ALV MYA+CG LE  +
Sbjct: 306 --RTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEAR 363

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGK------------------------------- 374
            VF+ M  RD V+W++LI +Y  +GYG                                 
Sbjct: 364 KVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGC 423

Query: 375 ---AIQIFKEMI-YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
              A++IF+EM    G+ P  ++F++VL AC+  G + E K L   +  E  +  +V   
Sbjct: 424 AVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQI-SESELESNVVVT 482

Query: 431 ACMVDLLGRANKLEEAAKII 450
             ++++  R   LEEA ++ 
Sbjct: 483 NTLINMYARCGSLEEAERLF 502


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/605 (38%), Positives = 366/605 (60%), Gaps = 12/605 (1%)

Query: 61  KQGNLRQALDVLSIEP---NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL 117
           ++G+   AL V    P    P   T+ L L +C     L    +V     D G+  D F+
Sbjct: 86  RRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFV 145

Query: 118 VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177
            + L+++Y+ + ++ DA  VF +  RR    W+ +      AG+  + +++YRRM   G 
Sbjct: 146 CSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDG- 204

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
            ++ D      V++AC A+      ++ G  +H  +LRHG    V   T+L+DMYA+ G 
Sbjct: 205 -VKGDEVVMIGVIQACTAARN----VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGL 259

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           +  A  VF  M  +N VSWSAMI+ +A+NG + EAL LFR M  ++  + P+S  +VS L
Sbjct: 260 LDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNM--QASGIQPDSGALVSAL 317

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            AC+ +  L+ G+ +HG+I+RR  D    + +A + MY++CG L   Q +F+ +  RD++
Sbjct: 318 LACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLI 376

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
            WN++I+  G HG G  A+ +F+EM   G+ P   +F S+L A SH+GLVEEGK+ F  M
Sbjct: 377 LWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRM 436

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
                I P+ +HY C+VDLL R+  +EEA+ ++  ++ EP   +W +LL  C  +  +EL
Sbjct: 437 VNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLEL 496

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
            E  +  + EL+P + G   L++++YAA   WD+V++V++L++  G +K+PG S IE++ 
Sbjct: 497 GESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRG 556

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
             + FV  D+ HPQ E++ + +  L  EM++ GY+P+T+ V +DL+ E KE+ +  HSE+
Sbjct: 557 TRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSER 616

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AFGL+NT  G  + I KNLR+C DCH   K+ISK A++EI+VRD  RFHHF++GVCS
Sbjct: 617 LAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCS 676

Query: 658 CGDYW 662
           C DYW
Sbjct: 677 CRDYW 681


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/561 (40%), Positives = 342/561 (60%), Gaps = 9/561 (1%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH +    GF     L   L+++YS+         +F    ++ +  W A+  + T AG 
Sbjct: 319 VHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGL 378

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            ++V  L++ M   GT  R D F  T  L A      G  LLKHGK +H   +R+G   +
Sbjct: 379 YDKVAGLFQEMGLEGT--RPDIFAITSALHAFA----GNELLKHGKSVHGYAIRNGMEKV 432

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           + +   L++MY + G +  A  +F  +  K+++SW+ +I  Y+RN +A EA  LF EM++
Sbjct: 433 LAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLL 492

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           +   L PN+VTM  +L A A+L++LE+G+ +H Y LRRG      V +AL+ MY +CG L
Sbjct: 493 Q---LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGAL 549

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
            L + +FD +  ++++SW  +++ YG+HG G  AI +F++M   G++P   SF ++L AC
Sbjct: 550 LLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYAC 609

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SH+GL +EG   F++MRKEH I P ++HY CMVDLL     L+EA + I+ + IEP   +
Sbjct: 610 SHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSI 669

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W SLL  CRIH NV+LAE  ++R+FELEP N G YVLLA++YA A+ W+ V+++K  +  
Sbjct: 670 WVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGG 729

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           RGL++  G S IE K K++ F++ +  HPQ  ++   L  ++  M+E+G+ P+ K  L  
Sbjct: 730 RGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKYALMG 789

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
            D       + GHS KLAVAFG++N S+G  IR+TKN R+C  CH   KFISK  ++EI+
Sbjct: 790 ADNAVHGEALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCSREII 849

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           +RD NRFHHF  G CSC  YW
Sbjct: 850 LRDSNRFHHFEQGRCSCRGYW 870



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 139/490 (28%), Positives = 238/490 (48%), Gaps = 32/490 (6%)

Query: 40  SSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDA 99
           +  +P  + + + N  IQ LC+ G+L +AL +L  +      +Y  +L  C+   SL   
Sbjct: 52  AEKSPDWVPTSDVNLHIQRLCRSGDLEEALGLLGSD-GVDDRSYGAVLQLCSEVRSLEGG 110

Query: 100 LNVH-----SHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT-IYVWNALF 153
              H     S L  +G D    L  KL+ +Y     +++AR VFD+  + + + VW AL 
Sbjct: 111 KRAHFLVRASSLGRDGMDN--VLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALM 168

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                AG   E + L+R+M+  G  +R D +T + VLK C+A   G   ++ G+ +H  +
Sbjct: 169 SGYAKAGDLREGVLLFRKMHCCG--VRPDAYTISCVLK-CIA---GLGSIEDGEVVHGLL 222

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
            + G+     +   L+  YA+      A  VF  M  ++V+SW++MI+    NG+  +A+
Sbjct: 223 EKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAI 282

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
           ELF  M +E  +L  +S T++SVL ACA L  L  G+++HGY ++ G  S   + + L+ 
Sbjct: 283 ELFVRMWLEGEEL--DSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLD 340

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MY+ C        +F +M +++VVSW ++I+SY   G   K   +F+EM   G  P   +
Sbjct: 341 MYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFA 400

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG----RANKLEEAAKI 449
             S L A +   L++ GK +       + IR  +E    + + L     +   +EE AK+
Sbjct: 401 ITSALHAFAGNELLKHGKSV-----HGYAIRNGMEKVLAVTNALMEMYVKCGNMEE-AKL 454

Query: 450 IEDLRIEPGPKVWGSLLGS-CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
           I D  +      W +L+G   R +   E     ++ L +L P    N V +  +  AA  
Sbjct: 455 IFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLRP----NAVTMTCILPAAAS 510

Query: 509 WDEVKRVKRL 518
              ++R + +
Sbjct: 511 LSSLERGREM 520



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           +L + PN    T   +L +    +SL     +H++    G+ +D F+   LI++Y    +
Sbjct: 491 LLQLRPNAV--TMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGA 548

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           +  AR +FD+   + +  W  +     + GRG + + L+ +M    +GI  D  +++ +L
Sbjct: 549 LLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMR--VSGIAPDAASFSAIL 606

Query: 191 KAC 193
            AC
Sbjct: 607 YAC 609


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/562 (39%), Positives = 356/562 (63%), Gaps = 8/562 (1%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            VH+ +T  G   D  +  KL+ + +    +  A  +F+K   R    W+ +       G
Sbjct: 21  QVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNG 80

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
             E   + +R +   G+  + D F+  +V+KAC   + G  +   G+ IH++VL++G + 
Sbjct: 81  DYERCFQTFRELIRAGS--KPDNFSLPFVIKAC-RDTMGLIM---GRLIHSTVLKNGLHL 134

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
              + +TL+DMYA+ G +  A  +F +M  K++V+ + MIA YA  G   E+  LF +M 
Sbjct: 135 DNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMR 194

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
            +     P+ V MV+++ ACA L A+ + +++H Y+  R     + + +A++ MYA+CG 
Sbjct: 195 RDG--FVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGS 252

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           ++  + +FD M++++V+SW+++I +YG HG G +A+++F  M+  G+ P+ I+F+S+L A
Sbjct: 253 IDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYA 312

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
           CSHAGLV++G  LF  M   + +RP V+HY CMVDLLGRA +L++A ++IE++ +E    
Sbjct: 313 CSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEG 372

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
           +W + LG+CRIH  V+LAE+A+K L  L+  N G+Y+LL+++YA A  W +V +++ L+ 
Sbjct: 373 IWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMA 432

Query: 521 ARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY 580
            R L+K+PG + IEV   +Y F + D  H +  +++ +L +LS +++  GYVP T  VL+
Sbjct: 433 KRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLH 492

Query: 581 DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEI 640
           D+D E K  I+  HSEKLA+AFGLI T  G  IRITKNLR+C DCHSF K +S    ++I
Sbjct: 493 DVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDI 552

Query: 641 LVRDVNRFHHFRNGVCSCGDYW 662
           +VRD NRFHHF+ G+CSCGDYW
Sbjct: 553 IVRDANRFHHFKEGICSCGDYW 574



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 143/272 (52%), Gaps = 16/272 (5%)

Query: 207 KEIHASVLRHGYNGIVH---IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
           K++HA V      GI+H   +   L+ M A+   ++ A  +F++M  ++ VSWS MI  +
Sbjct: 20  KQVHAQVTT---TGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGF 76

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
            +NG      + FRE+I       P++ ++  V++AC     L  G++IH  +L+ GL  
Sbjct: 77  VKNGDYERCFQTFRELIRAGSK--PDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHL 134

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
              V S LV MYA+CG ++  + +FD M K+D+V+   +I+ Y   G   ++  +F +M 
Sbjct: 135 DNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMR 194

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM--RKEHMIRPSVEHYACMVDLLGRAN 441
             G  P  ++ V+++ AC+  G + + +++ + +  R+  +    VE    M+D+  +  
Sbjct: 195 RDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSL---DVELGTAMIDMYAKCG 251

Query: 442 KLEEAAKIIEDLRIEPGPKV-WGSLLGSCRIH 472
            ++ + +I +  R+E    + W +++G+   H
Sbjct: 252 SIDSSREIFD--RMEQKNVISWSAMIGAYGYH 281



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 150/322 (46%), Gaps = 16/322 (4%)

Query: 55  LIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    K G+  +      +++     P   +   ++ +C     L     +HS +  NG
Sbjct: 72  MIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNG 131

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              D F+ + L+++Y+    +D+A+ +FD+  ++ +     +       G+  E   L+ 
Sbjct: 132 LHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFD 191

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           +M       R D F    V    + ++C     +   + +H  V    Y+  V + T +I
Sbjct: 192 QM-------RRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMI 244

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
           DMYA+ G +  +  +F +M  KNV+SWSAMI  Y  +G   EALELF  M+  +  + PN
Sbjct: 245 DMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMML--NSGIIPN 302

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYI-LRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
            +T +S+L AC+    ++ G  +   + +  G+   +   + +V +  R G+L+    + 
Sbjct: 303 RITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLI 362

Query: 349 DHMD-KRDVVSWNSLISSYGVH 369
           ++M+ ++D   W + + +  +H
Sbjct: 363 ENMEVEKDEGIWCAFLGACRIH 384



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
           Q K +H  +   G+   L V + L+ M A+   L     +F+ M++RD VSW+ +I  + 
Sbjct: 18  QIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFV 77

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
            +G   +  Q F+E+I  G  P   S   V+ AC     +  G+++  ++ K  +    +
Sbjct: 78  KNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGL---HL 134

Query: 428 EHYAC--MVDLLGRANKLEEAAKIIE 451
           +++ C  +VD+  +   ++ A ++ +
Sbjct: 135 DNFVCSTLVDMYAKCGMIDNAKQLFD 160


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/518 (44%), Positives = 325/518 (62%), Gaps = 37/518 (7%)

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
           G G++ ++FT + V+KAC +     + L+ GK+ H  +++ G+   V + T L+ MYAR 
Sbjct: 3   GKGVKPNQFTLSTVVKACAS----IASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARC 58

Query: 236 GCVMYAGFVFS-------------------------------QMAVKNVVSWSAMIACYA 264
           G +  AG VF                                +M+ ++VVSW+A+IA YA
Sbjct: 59  GSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYA 118

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           +NG   E+L +F +M      +  +   M SVL ACA LAALE G+  H Y+++ G    
Sbjct: 119 QNGYGDESLNVFNQM--RKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALD 176

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + V SALV MYA+ G +E    VFD M +R+ VSWNS+I+    HG G  A+ +F++M+ 
Sbjct: 177 IVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQ 236

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            G+ P+ ISFV VL ACSH GLV EG+  F  M + + I P V HY CM+DLLGRA  L+
Sbjct: 237 AGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLD 296

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
           EA   I  + +EP   VWG+LLG+CRIH N ELA+R ++ L  +E   AG YVLL+++YA
Sbjct: 297 EAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYA 356

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
           AA  WD+  +V++L++ RG+ K PG S IEVK  M++FV+ +  HPQ +++H  L +LS 
Sbjct: 357 AAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSR 416

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           +MK  GYVP    VL D++ +EKE  +  HSEKLA+AFG+INT+ G TIR+ KNLR+C D
Sbjct: 417 KMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGD 476

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH+  KFIS    ++I+VRD NRFHHF++G CSCGDYW
Sbjct: 477 CHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 161/329 (48%), Gaps = 47/329 (14%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P Q T   ++ +C    SL      H+++   GF+ D  + T L+++Y+   S++DA HV
Sbjct: 8   PNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHV 67

Query: 138 FDKTRRRTIYVWNALF----------RALTL---------------------AGRGEEVL 166
           FDK   R+   WNA+           +AL L                      G G+E L
Sbjct: 68  FDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESL 127

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            ++ +M    TG++SDRF    VL AC       + L+ G++ HA V++ G+   + + +
Sbjct: 128 NVFNQMR--KTGMKSDRFIMGSVLSACA----DLAALELGRQFHAYVVQSGFALDIVVGS 181

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+DMYA+ G +  A  VF +M  +N VSW+++I   A++G   +A+ LF +M+     +
Sbjct: 182 ALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAG--I 239

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYI-LRRGLDSILPVVS---ALVTMYARCGKLE 342
            PN ++ V VL AC+    + +G+   GY  L      I+P VS    ++ +  R G L+
Sbjct: 240 KPNEISFVGVLSACSHTGLVNEGR---GYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLD 296

Query: 343 LGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
             +   + M  + DV  W +L+ +  +HG
Sbjct: 297 EAENFINGMPVEPDVSVWGALLGACRIHG 325


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/485 (43%), Positives = 324/485 (66%), Gaps = 10/485 (2%)

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY----ARFGC 237
           ++FTY +VLKAC     G   L  GK +H SV++ G+   V++  TL+ MY       G 
Sbjct: 9   NKFTYPFVLKACA----GIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGG 64

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           + +A  VF +M   + VSWSAMI  Y R G + +A+ LFREM ++   +CP+ +TMVSVL
Sbjct: 65  IEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKG--VCPDEITMVSVL 122

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            AC  L ALE GK +  Y+ +  +   + + +AL+ M+A+CG ++    +F  M +R++V
Sbjct: 123 SACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIV 182

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           SW S+I    +HG G +A+ +F+EM+  GV+P  + F+ +L ACSH+GLV++GK  F+SM
Sbjct: 183 SWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSM 242

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
           RK+  I P +EHY CMVD+L RA  ++EA K ++++ I+P P VW +L+ +CR H  ++L
Sbjct: 243 RKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKL 302

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
            E+ +++L   EP +  NYVLL+++YA    W++  R++  ++ +G++K+PG + IE+  
Sbjct: 303 GEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDN 362

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
           ++Y FV+ D+ H Q ++++ ++  +  EMK  GY+P T  VL D+D E+KE  +  HSEK
Sbjct: 363 EIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSEK 422

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AF L+NT  G  IRI KNLR+C+DCHS +KFISK  N+EI+VRD NRFHHF+NG+CS
Sbjct: 423 LAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCS 482

Query: 658 CGDYW 662
           C D+W
Sbjct: 483 CRDFW 487



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 178/393 (45%), Gaps = 47/393 (11%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY----SHFDSVDD 133
           P + TY  +L +C    +L+   +VH  +   GF  +  +   L+++Y         ++ 
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR VFD+  +     W+A+       GR  + + L+R M     G+  D  T   VL AC
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQ--IKGVCPDEITMVSVLSAC 125

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                G   L+ GK + + V +      V +   LIDM+A+ G V  A  +F  M  +N+
Sbjct: 126 T----GLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNI 181

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+++I   A +G   EA+ +F EM+     + P+ V  + +L AC+    +++GK   
Sbjct: 182 VSWTSVIGGLAMHGRGVEAVAVFEEMVRSG--VTPDDVVFIGLLSACSHSGLVDKGKRYF 239

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
              +R+   SI+P             K+E   C+ D + +  +V                
Sbjct: 240 DS-MRKDF-SIVP-------------KIEHYGCMVDMLCRAGLVK--------------- 269

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A++  +EM    + P+P+ + +++ AC   G ++ G+ +   + +   +  S  +Y  +
Sbjct: 270 EALKFVQEM---PIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHES--NYVLL 324

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
            ++  + +  E+  +I E + ++   K+ GS +
Sbjct: 325 SNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTM 357



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 6/189 (3%)

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC----GKLEL 343
           PN  T   VL+ACA +  L  GK +HG +++ G    + V + LV MY  C    G +E 
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
            + VFD M K D VSW+++I  Y   G    AI +F+EM   GV P  I+ VSVL AC+ 
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
            G +E GK + ES  ++  ++ +VE    ++D+  +   +++A  +   +R E     W 
Sbjct: 128 LGALELGKWV-ESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMR-ERNIVSWT 185

Query: 464 SLLGSCRIH 472
           S++G   +H
Sbjct: 186 SVIGGLAMH 194


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/615 (39%), Positives = 381/615 (61%), Gaps = 14/615 (2%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G   +AL            P + +   +L +      L +   +H++   
Sbjct: 182 NSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMK 241

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           N  D +  +   LI++YS    V  A  VFDK   + +  W  +  A        E L+L
Sbjct: 242 NWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKL 301

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            R++   G  +  D       L AC    C    L H KE+H   L+ G + ++ +   +
Sbjct: 302 LRKVQTKGMDV--DTMMIGSTLLACSGLRC----LSHAKEVHGYTLKRGLSDLM-MQNMI 354

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           ID+YA  G + YA  +F  +  K+VVSW++MI+CY  NG+A EAL +F   +M+   + P
Sbjct: 355 IDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVF--YLMKETSVEP 412

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +S+T+VS+L A A+L+AL +GK IHG+I R+G       V++LV MYA CG LE    VF
Sbjct: 413 DSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVF 472

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
                + +V W ++I++YG+HG G  A+++F  M    + P  I+F+++L ACSH+GL+ 
Sbjct: 473 ICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLIN 532

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EGK L E+M+ ++ + P  EHYAC+VDLLGRAN LEEA   ++ ++IEP  +VW + LG+
Sbjct: 533 EGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGA 592

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH N +L E A+++L +L+P + G+YVL+++V+AA+  W +V+ V+  ++  GL+K P
Sbjct: 593 CRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNP 652

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM-KEKGYVPQTKVVLYDLDAEEK 587
           G S IEV  K+++F+  D+ HP+  +++  L  ++ ++ KE GYVPQTK+VL+++  EEK
Sbjct: 653 GCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEK 712

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
            +++ GHSE+LA+A+GL++TS+G  IRITKNLR+C DCH+F K +SKF  +E++VRD +R
Sbjct: 713 VQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASR 772

Query: 648 FHHFRNGVCSCGDYW 662
           FHHF +GVCSCGD+W
Sbjct: 773 FHHFEDGVCSCGDFW 787



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 203/392 (51%), Gaps = 13/392 (3%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+  +L +C     +     +H  +   G+D   F+   L+++Y+  + +  AR +FD+ 
Sbjct: 12  TFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRM 71

Query: 142 RRRTIYV-WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
             R   V WN++  A +L G+  E L L+R M   G G  ++ +T    L+AC  S    
Sbjct: 72  NERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVG--ANTYTLVAALQACEDS---- 125

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           S  K G EIHA++L+      V++   L+ M+ RFG + YA  +F ++  K+ ++W++MI
Sbjct: 126 SFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMI 185

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           A + +NG+  EAL+ F    ++  +L P+ V+++S+L A   L  L  GK IH Y ++  
Sbjct: 186 AGFTQNGLYNEALQFFCG--LQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNW 243

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           LDS L + + L+ MY++C  +     VFD M  +D++SW ++I++Y  +    +A+++ +
Sbjct: 244 LDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLR 303

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           ++   G+    +   S L ACS    +   K +     K  +    +++   ++D+    
Sbjct: 304 KVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNM--IIDVYADC 361

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
             +  A ++ E ++ +     W S++ SC +H
Sbjct: 362 GNINYATRMFESIKCKDVVS-WTSMI-SCYVH 391



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 132/235 (56%), Gaps = 7/235 (2%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G+  D FT+  VLKAC         +  G EIH  +++ GY+ IV +  +L+ MYA+   
Sbjct: 5   GVPFDSFTFPCVLKACGV----VEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 238 VMYAGFVFSQMAVKN-VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
           ++ A  +F +M  +N VVSW+++I+ Y+ NG   EAL LFREM  +   +  N+ T+V+ 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREM--QKAGVGANTYTLVAA 118

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           LQAC   +  + G  IH  IL+      + V +ALV M+ R GK+     +FD +D++D 
Sbjct: 119 LQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDN 178

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           ++WNS+I+ +  +G   +A+Q F  +    + P  +S +S+L A    G +  GK
Sbjct: 179 ITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGK 233



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 103/180 (57%), Gaps = 3/180 (1%)

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +S T   VL+AC  +  + +G  IHG I++ G DSI+ V ++LV+MYA+C  +   + +F
Sbjct: 9   DSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLF 68

Query: 349 DHMDKR-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           D M++R DVVSWNS+IS+Y ++G   +A+ +F+EM   GV  +  + V+ L AC  +   
Sbjct: 69  DRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFK 128

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           + G  +  ++ K + +       A +V +  R  K+  AA+I ++L  E     W S++ 
Sbjct: 129 KLGMEIHAAILKSNQVLDVYVANA-LVAMHVRFGKMSYAARIFDELD-EKDNITWNSMIA 186


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/587 (40%), Positives = 351/587 (59%), Gaps = 14/587 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PT  T+  ++ SC     L+    +      +GF  D  ++T L+   S    +DDA  +
Sbjct: 293 PTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSL 352

Query: 138 FDKTRR-RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           F      + +  W A+       G  ++ + L+ +M   G  ++ + FTY+ +L      
Sbjct: 353 FSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREG--VKPNHFTYSAILTVHYPV 410

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                      E+HA V++  Y     + T L+D Y + G  + A  VF  +  K++++W
Sbjct: 411 FVS--------EMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAW 462

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA-LAALEQGKMIHGY 315
           SAM+A YA+ G   EA +LF ++I E   + PN  T  SV+ ACA+  AA EQGK  H Y
Sbjct: 463 SAMLAGYAQTGETEEAAKLFHQLIKEG--IKPNEFTFSSVINACASPTAAAEQGKQFHAY 520

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
            ++  L++ L V SALVTMYA+ G ++    VF    +RD+VSWNS+IS Y  HG   KA
Sbjct: 521 AIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKA 580

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           +++F EM    +    ++F+ V+ AC+HAGLVE+G+  F SM  +H I P+++HY+CM+D
Sbjct: 581 LEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMID 640

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495
           L  RA  LE+A  II ++   PG  VW +LLG+ R+H NVEL E A+++L  L+P ++  
Sbjct: 641 LYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAA 700

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           YVLL+++YAAA  W E   V++L++ R ++K PG S IEVK K YSF++ D  HP   Q+
Sbjct: 701 YVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQI 760

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
           ++ L  LS  +K+ GY P TK V +D++ E+KE I+  HSE+LA+AFGLI T     I+I
Sbjct: 761 YSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQI 820

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C DCH+FTK +S    + I+VRD NRFHHF++G+CSCGDYW
Sbjct: 821 VKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 191/367 (52%), Gaps = 29/367 (7%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHH---N 94
           PT+L  +  N+L+ S  +    ++AL++       S++P+ +        LSC  +    
Sbjct: 55  PTTL--KEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDEST-------LSCVFNICAG 105

Query: 95  SLSDAL--NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
           SL   L   VH      G      + T L+++Y   ++V+D R VFD+   R +  W +L
Sbjct: 106 SLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSL 165

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
               +  G    V EL+ +M     G+  +R+T + V+ A V       ++  G ++HA 
Sbjct: 166 LAGYSWNGLYGYVWELFCQMQ--YEGVLPNRYTVSTVIAALVNE----GVVGIGLQVHAM 219

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
           V++HG+   + +  +LI +Y+R G +  A  VF +M +++ V+W++MIA Y RNG   E 
Sbjct: 220 VVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEV 279

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
            E+F +M +    + P  +T  SV+++CA+L  L   K++    L+ G  +   V++AL+
Sbjct: 280 FEIFNKMQLAG--VKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALM 337

Query: 333 TMYARCGKLELGQCVFDHMDK-RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
              ++C +++    +F  M++ ++VVSW ++IS    +G   +A+ +F +M   GV P+ 
Sbjct: 338 VALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNH 397

Query: 392 ISFVSVL 398
            ++ ++L
Sbjct: 398 FTYSAIL 404



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 172/340 (50%), Gaps = 15/340 (4%)

Query: 134 ARHVFDKTRRR--TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
           A ++FDK   R  T+   N L  + +   + +E L L+  +    + ++ D  T + V  
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSL--LHSSLQPDESTLSCVFN 101

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
            C  S  G    K G+++H   ++ G    V + T+L+DMY +   V     VF +M  +
Sbjct: 102 ICAGSLDG----KLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGER 157

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           NVVSW++++A Y+ NG+     ELF +M  E   + PN  T+ +V+ A      +  G  
Sbjct: 158 NVVSWTSLLAGYSWNGLYGYVWELFCQMQYEG--VLPNRYTVSTVIAALVNEGVVGIGLQ 215

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +H  +++ G +  +PV ++L+++Y+R G L   + VFD M+ RD V+WNS+I+ Y  +G 
Sbjct: 216 VHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQ 275

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             +  +IF +M   GV P+ ++F SV+ +C+    +   K++     K       +   A
Sbjct: 276 DLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITA 335

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKV--WGSLLGSC 469
            MV  L +  ++++A  +     +E G  V  W +++  C
Sbjct: 336 LMV-ALSKCKEMDDALSLFS--LMEEGKNVVSWTAMISGC 372



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 169/338 (50%), Gaps = 14/338 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P ++T   ++ +  +   +   L VH+ +  +GF++   +   LI++YS    + DAR V
Sbjct: 192 PNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDV 251

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FDK   R    WN++       G+  EV E++ +M     G++    T+  V+K+C AS 
Sbjct: 252 FDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQ--LAGVKPTHMTFASVIKSC-ASL 308

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNVVSW 256
              +L+   K +    L+ G+     ++T L+   ++   +  A  +FS M   KNVVSW
Sbjct: 309 RELALV---KLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSW 365

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AMI+   +NG   +A+ LF +M  E   + PN  T  ++L     +   E    +H  +
Sbjct: 366 TAMISGCLQNGGNDQAVNLFSQMRREG--VKPNHFTYSAILTVHYPVFVSE----MHAEV 419

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++   +    V +AL+  Y + G       VF+ ++ +D+++W+++++ Y   G   +A 
Sbjct: 420 IKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAA 479

Query: 377 QIFKEMIYHGVSPSPISFVSVLGAC-SHAGLVEEGKML 413
           ++F ++I  G+ P+  +F SV+ AC S     E+GK  
Sbjct: 480 KLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQF 517


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/585 (39%), Positives = 357/585 (61%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T+  LL   T  + L +   +H  +T++G D    +   L+NVY   +S DDAR V
Sbjct: 360 PNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTV 419

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+     +  WN++        R ++ L+L+R M   G  I+ DR  +  +L AC   S
Sbjct: 420 FDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQG--IQPDRVNFMTILGACTIGS 477

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G    +  K +H  V   G  G   + T+L++MYA+ G +  A  +  +M  + + +W+
Sbjct: 478 HG----RTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWN 533

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            +I  YA +G + EALE ++++ +E+  +  + VT +SVL AC +  +L +GKMIH   +
Sbjct: 534 VLINGYALHGRSREALEAYQKLQLEA--IPVDKVTFISVLNACTSSTSLAEGKMIHSNAV 591

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
             GLDS + V +AL  MY++CG +E  + +FD M  R  VSWN ++ +Y  HG   + ++
Sbjct: 592 ECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLK 651

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           + ++M   GV  + I+FVSVL +CSHAGL+ EG   F S+  +  I    EHY C+VDLL
Sbjct: 652 LIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLL 711

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA KL+EA K I  + +EPG   W SLLG+CR+  +++  + A+ +L EL+P N+   V
Sbjct: 712 GRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASV 771

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           +L+++Y+    W    +++R + +R ++KVPG S I+VK K++ F   D  HP+  +++ 
Sbjct: 772 VLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYD 831

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            +  L   M+E GYVP TK+VL+D+D E+KE ++  HSEKLA+AFGLI+T +  ++ I K
Sbjct: 832 KVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFK 891

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+CEDCH+ TKFISK   +EI+VRD +RFHHFR+G CSC DYW
Sbjct: 892 NLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 211/418 (50%), Gaps = 13/418 (3%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+  +L S    ++L     +HS + ++    D F+ T L+N Y+   S+ DAR VFD  
Sbjct: 162 TFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGM 221

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             R++  WN++  A +++ R  E   +++RM   G   R DR T+  +L ACV       
Sbjct: 222 PCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGE--RCDRVTFLSILDACVNPET--- 276

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L+HGK +  S+    +   + + T LI MYAR      A  VF +M   N+++WSA+I 
Sbjct: 277 -LQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIIT 335

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            +A +G   EAL  FR  +M+   + PN VT +S+L      + LE+   IH  I   GL
Sbjct: 336 AFADHGHCGEALRYFR--MMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGL 393

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           D    + +ALV +Y RC   +  + VFD ++  +++SWNS+I  Y        A+Q+F+ 
Sbjct: 394 DDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRT 453

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM-IRPSVEHYACMVDLLGRA 440
           M   G+ P  ++F+++LGAC+        K++ + + +  +   P V+    +V++  +A
Sbjct: 454 MQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQ--TSLVNMYAKA 511

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL-FELEPTNAGNYV 497
            +L+ A  I++++  E     W  L+    +H     A  A ++L  E  P +   ++
Sbjct: 512 GELDVAEVILQEMD-EQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFI 568



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 207/392 (52%), Gaps = 13/392 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L SC     L D + VH+   + GF Q+  + T L+N+Y    ++ DA+ V
Sbjct: 56  PNAITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSV 115

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEV-LELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           F++   + +  WNA+    +L G   ++ +EL+ RM     G++++  T+  VL + V  
Sbjct: 116 FEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRM--LLEGVKANVITFLNVLNSVVDP 173

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+ GK IH+ V    ++  V + T L++ Y + G +  A  VF  M  ++V +W
Sbjct: 174 DA----LRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTW 229

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           ++MI+ Y+ +  + EA  +F+ M  E  + C + VT +S+L AC     L+ GK +   I
Sbjct: 230 NSMISAYSISERSGEAFFIFQRMQQEG-ERC-DRVTFLSILDACVNPETLQHGKHVRESI 287

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
                +  L V +AL+TMYARC   E    VF  M + ++++W+++I+++  HG+ G+A+
Sbjct: 288 SETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEAL 347

Query: 377 QIFKEMIYHGVSPSPISFVSVL-GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           + F+ M   G+ P+ ++F+S+L G  + +GL E  ++    +  EH +  +      +V+
Sbjct: 348 RYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHL--LITEHGLDDTTTMRNALVN 405

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           + GR    ++A  + + L + P    W S++G
Sbjct: 406 VYGRCESPDDARTVFDQLEL-PNLISWNSMIG 436



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 197/404 (48%), Gaps = 14/404 (3%)

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +YS   S+ DA   F K R R +  WN +  A +     +E L L+  M     G+  + 
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAM--LLEGVAPNA 58

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
            T   VL +C +    F  L+ G  +HA  L  G+     + T L++MY + G ++ A  
Sbjct: 59  ITLVAVLNSCGS----FRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQS 114

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFE-ALELFREMIMESHDLCPNSVTMVSVLQACAA 302
           VF +MA KNVV+W+AM+  Y+  G  ++ A+ELF  M++E   +  N +T ++VL +   
Sbjct: 115 VFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEG--VKANVITFLNVLNSVVD 172

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
             AL +GK IH  +        + V +ALV  Y +CG L   + VFD M  R V +WNS+
Sbjct: 173 PDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSM 232

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           IS+Y +    G+A  IF+ M   G     ++F+S+L AC +   ++ GK + ES+  E  
Sbjct: 233 ISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESI-SETS 291

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERAS 482
               +     ++ +  R    E+AA++   ++ +     W +++ +   H +   A R  
Sbjct: 292 FELDLFVGTALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHGHCGEALRYF 350

Query: 483 KRLFELEPT--NAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
            R+ + E    N   ++ L + +      +E+ R+  L+   GL
Sbjct: 351 -RMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGL 393


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/599 (38%), Positives = 362/599 (60%), Gaps = 43/599 (7%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           S++  L +H+ L   G   +P L  KL   Y+    +D +  VF+      ++ ++A+  
Sbjct: 59  SVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIH 118

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
           +   +   +     Y +M     G+  + FT++ VLK+C         L+ GK +H   +
Sbjct: 119 SHVQSRLFDRAFGYYSQM--LSCGVEPNAFTFSSVLKSCS--------LESGKVLHCQAI 168

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS------------------- 255
           + G    +++ T L+D+YAR G V+ A  +F +M  +++VS                   
Sbjct: 169 KLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARS 228

Query: 256 ------------WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
                       W+ MI  YA++G+  E+L+LFR M++      PN VT+++VL AC  L
Sbjct: 229 LFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAK--AIPNEVTVLAVLSACGQL 286

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
            ALE G+ IH YI  +G+   + V +AL+ MY++CG LE  + VFD +  +DVV+WNS+I
Sbjct: 287 GALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMI 346

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
             Y +HG+   A+Q+F+EM   G  P+ I+F+ +L AC H GLVEEG+  F  MR ++ I
Sbjct: 347 VGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGI 406

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
            P +EHY CMV+LLGRA  LEEA  +++++ I   P +WG+LLG CR+H N++L E  +K
Sbjct: 407 EPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAK 466

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
            L + +  N+G YVLL+++YAA   W+ V +++ L++  G++K  G S IEV  K++ FV
Sbjct: 467 FLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFV 526

Query: 544 SVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFG 603
           + +  HP+ ++++ +L  +++ +K +GY PQT VVL+DL  E+KE+ +  HSEKLA+AFG
Sbjct: 527 AGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFG 586

Query: 604 LINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           LI+T  G T++I KNLR+C DCH+  K IS+   ++I++RD NRFHHF +G+CSCGDYW
Sbjct: 587 LISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 8/187 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T   +L +C    +L     +HS++ + G   +  + T LI++YS   S++DAR V
Sbjct: 271 PNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLV 330

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+ R + +  WN++     + G  +  L+L+  M  T TG +    T+  +L AC    
Sbjct: 331 FDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEM--TETGHKPTDITFIGILSACGHG- 387

Query: 198 CGFSLLKHGKEIHASVL-RHGYNGIVHIMTTLIDMYARFGCVMYA-GFVFSQMAVKNVVS 255
               L++ G+     +  ++G    +     ++++  R G +  A G V +     + V 
Sbjct: 388 ---GLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVL 444

Query: 256 WSAMIAC 262
           W  ++ C
Sbjct: 445 WGTLLGC 451


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/616 (38%), Positives = 366/616 (59%), Gaps = 14/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS-----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N ++ +  +      A+ + S      E  P   T   ++ +C     L     +H   T
Sbjct: 176 NAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMAT 235

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDA-RHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
                 D F+   LI +Y     V++A + VFD    +T+  WNAL           + L
Sbjct: 236 KMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKAL 295

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +LY +M  T +G+  D FT   +L AC         L +G+EIH   LR+G      I  
Sbjct: 296 DLYLQM--TDSGLDPDWFTIGSLLLACSR----MKSLHYGEEIHGFALRNGLAVDPFIGI 349

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +L+ +Y   G    A  +F  M  +++VSW+ MIA Y++NG+  EA+ LFR+M+  S  +
Sbjct: 350 SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQML--SDGI 407

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P  + ++ V  AC+ L+AL  GK +H + L+  L   + V S+++ MYA+ G + L Q 
Sbjct: 408 QPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQR 467

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +FD + ++DV SWN +I+ YG+HG G +A+++F++M+  G+ P   +F  +L ACSHAGL
Sbjct: 468 IFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGL 527

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           VE+G   F  M   H I P +EHY C+VD+LGRA ++++A ++IE++  +P  ++W SLL
Sbjct: 528 VEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLL 587

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            SCRIH N+ L E+ + +L ELEP    NYVL+++++A +  WD+V+RV+  ++  GLQK
Sbjct: 588 SSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQK 647

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S IEV  K+++F+  DE  P+ E++      L  ++   GY P T  VL+DL+ E+
Sbjct: 648 DAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEED 707

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           K  I+ GHSEKLA++FGL+NT+KG  +R+ KNLR+C DCH+  KFISK  N++I+VRD  
Sbjct: 708 KIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNK 767

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHFR+G+CSCGDYW
Sbjct: 768 RFHHFRDGICSCGDYW 783



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 137/447 (30%), Positives = 223/447 (49%), Gaps = 23/447 (5%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPT-------QHTYELLLL 88
           +S  +S+T    SS ++   I+ LC+ GNL++ALD L  E +              +LL 
Sbjct: 57  LSFANSSTNRQFSSLHE---IKKLCESGNLKEALDFLQRESDDVVLDSAQRSEAMGVLLQ 113

Query: 89  SCTHHNSLSDALNVHSHLT-DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIY 147
           +C     +     +H  ++    F  D  L T++I +YS   S  D+R VFDK RR+ ++
Sbjct: 114 ACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLF 173

Query: 148 VWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGK 207
            WNA+  A T     E+ + ++  +    T  + D FT   V+KAC     G   L  G+
Sbjct: 174 QWNAIVSAYTRNELFEDAMSIFSELISV-TEHKPDNFTLPCVIKACA----GLLDLGLGQ 228

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA-GFVFSQMAVKNVVSWSAMIACYARN 266
            IH    +      V +   LI MY + G V  A   VF  M  K V SW+A++  YA+N
Sbjct: 229 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQN 288

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
               +AL+L+ +M     D  P+  T+ S+L AC+ + +L  G+ IHG+ LR GL ++ P
Sbjct: 289 SDPRKALDLYLQMTDSGLD--PDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGL-AVDP 345

Query: 327 VVS-ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            +  +L+++Y  CGK    Q +FD M+ R +VSWN +I+ Y  +G   +AI +F++M+  
Sbjct: 346 FIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSD 405

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ P  I+ + V GACS    +  GK L     K H+    +   + ++D+  +   +  
Sbjct: 406 GIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTE-DIFVSSSIIDMYAKGGCIGL 464

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           + +I + LR E     W  ++    IH
Sbjct: 465 SQRIFDRLR-EKDVASWNVIIAGYGIH 490


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/596 (37%), Positives = 355/596 (59%), Gaps = 43/596 (7%)

Query: 102 VHSHLTDNGFDQDPFLVTKLI----NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALT 157
           +H+++       D F  ++LI    +  S    +D A  +F + +   ++++NA+ R  +
Sbjct: 36  IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHS 95

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
            +   ++    Y  +     G+  D  T+ +++K+C    C    +  G + H  +++HG
Sbjct: 96  GSKNPDQAFHFY--VQSQRQGLLPDNLTFPFLVKSCTKLHC----ISMGSQAHGHIIKHG 149

Query: 218 YNGIVHIMTTLIDMYARFG--------------------CVMYAGF-----------VFS 246
           +   V++  +L+ MYA FG                      M  GF           +F 
Sbjct: 150 FEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFD 209

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
           QM  KN+V+WS MI+ YA+N    +A+ELF+  +++S  +  N   MVSV+ +CA L AL
Sbjct: 210 QMPEKNLVTWSTMISGYAQNNHFDKAVELFK--VLQSQGVRANETVMVSVISSCAHLGAL 267

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
           E G+  H Y+++ G+   L + +ALV MYARCG ++    VF+ + +RD +SW +LI+  
Sbjct: 268 ELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGL 327

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
            +HGY  ++++ F  M+  G++P  I+F +VL ACSH GLVE G  +FESM+++H + P 
Sbjct: 328 AMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPR 387

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF 486
           +EHY CMVDLLGRA KLEEA + +  + ++P   VWG+LLG+CRIH N E+ ER  K L 
Sbjct: 388 LEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILI 447

Query: 487 ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD 546
           +L P ++G YVLL+++YA A  W++V  ++++++A+GL+K PG S IE+  +++ F   D
Sbjct: 448 QLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGD 507

Query: 547 EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLIN 606
             HP+ +++  +   +   ++  GY   T   L+D+D EEKE  +  HSEKLA+AFG++ 
Sbjct: 508 SSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMR 567

Query: 607 TSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +  G  IRI KNLR+CEDCH+ TK ISK   +E++VRD NRFHHFR G+CSC DYW
Sbjct: 568 SEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 145/325 (44%), Gaps = 41/325 (12%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF--------- 128
           P   T+  L+ SCT  + +S     H H+  +GF++D ++   L+++Y+ F         
Sbjct: 117 PDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLI 176

Query: 129 ----------------------DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
                                   V+ AR +FD+   + +  W+ +          ++ +
Sbjct: 177 FQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAV 236

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++ +     G+R++      V+ +C         L+ G+  H  V+++G    + + T
Sbjct: 237 ELFKVLQ--SQGVRANETVMVSVISSCAH----LGALELGERAHDYVVKNGMTLNLILGT 290

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+DMYAR G +  A +VF  +  ++ +SW+A+IA  A +G +  +L+ F  M+     L
Sbjct: 291 ALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMV--EAGL 348

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELGQ 345
            P  +T  +VL AC+    +E+G  I   + R   ++  L     +V +  R GKLE  +
Sbjct: 349 TPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAE 408

Query: 346 CVFDHMD-KRDVVSWNSLISSYGVH 369
                M  K +   W +L+ +  +H
Sbjct: 409 RFVLKMPVKPNAPVWGALLGACRIH 433


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/627 (38%), Positives = 373/627 (59%), Gaps = 15/627 (2%)

Query: 41  STTPTSLSSRNK-NELIQSLCKQGNLRQALDVLSIEP---NPTQHTYELLLLSCTHHNSL 96
           +T PTS SS    N L+ +  +  +  +AL V    P    P   T+ L L +C     L
Sbjct: 60  ATAPTSPSSIPAWNALLAAHSRGASPHEALRVFRALPPAARPDSTTFTLALSACARLGDL 119

Query: 97  SDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL 156
           +    V    +  G+  D F+ + ++N+Y+   ++DDA  VFD+ R+R    W+ +    
Sbjct: 120 ATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGF 179

Query: 157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
             AG+  + +E+Y RM   G  + +D      V++AC A+       + G  +H  +LRH
Sbjct: 180 VNAGQPVQAIEMYMRMRRDG--LEADEVVIVGVMQACAATGDA----RMGASVHGYLLRH 233

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
                V I T+L+DMYA+ G    A  VF  M  +N VSWSA+I+  A+ G A EAL LF
Sbjct: 234 AMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLF 293

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMY 335
           R  +M+   L PNS  +V  L AC+ L  L+ GK IHG+ILR   LD +  V +A++ MY
Sbjct: 294 R--MMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLELDRM--VGTAVIDMY 349

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ++CG L   Q +FD +  RD++SWN +I+  G HG G  A+ +F+EM  + V P   +F 
Sbjct: 350 SKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFA 409

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
           S+L A SH+GLVEEGK  F  M  E+ I P  +H  C+VDLL R+  +EEA  ++  L  
Sbjct: 410 SLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHS 469

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
           +P   +  +LL  C  +  +EL E  ++++ EL+P + G   L++++YAAA  W +V+ V
Sbjct: 470 KPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVREV 529

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT 575
           ++L++  G +K PG S IE++  +++FV  D+ HPQ  Q+  +++ L +EM++ GY+P+T
Sbjct: 530 RKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGYIPKT 589

Query: 576 KVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKF 635
           + V +DL+   KE+++  HSE+LA AFGL+NTS G  + + KNLR+C DCH   K++SK 
Sbjct: 590 EFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCGDCHDAIKYMSKI 649

Query: 636 ANKEILVRDVNRFHHFRNGVCSCGDYW 662
           A++EI+VRD  RFHHF++G CSCGDYW
Sbjct: 650 ADREIVVRDAKRFHHFKDGACSCGDYW 676


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/575 (40%), Positives = 347/575 (60%), Gaps = 22/575 (3%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT------IYVWNALFR 154
            +HS +   G   +P ++TK     SHF++V  A  V     + T       +++N L R
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199

Query: 155 ALTLAGRGE-EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           A       +   L  Y  M      +  ++FT+ +VLKAC     G   L+ G  +HAS+
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHA--VSPNKFTFPFVLKAC----AGMMRLELGGAVHASM 253

Query: 214 LRHGYNGIVHIMTTLIDMY------ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
           ++ G+    H+  TL+ MY         G V  A  VF +  VK+ V+WSAMI  YAR G
Sbjct: 254 VKFGFEEDPHVRNTLVHMYCCCCQDGSSGPV-SAKKVFDESPVKDSVTWSAMIGGYARAG 312

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
            +  A+ LFREM  +   +CP+ +TMVSVL ACA L ALE GK +  YI R+ +   + +
Sbjct: 313 NSARAVTLFREM--QVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVEL 370

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
            +AL+ M+A+CG ++    VF  M  R +VSW S+I    +HG G +A+ +F EM+  GV
Sbjct: 371 CNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGV 430

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
            P  ++F+ VL ACSH+GLV++G   F +M     I P +EHY CMVD+L RA ++ EA 
Sbjct: 431 DPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEAL 490

Query: 448 KIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507
           + +  + +EP   +W S++ +C     ++L E  +K L   EP++  NYVLL+++YA   
Sbjct: 491 EFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLL 550

Query: 508 MWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK 567
            W++  +V+ +++ +G++K+PG + IE+  ++Y FV+ D+ H Q+++++ ++  +  E+K
Sbjct: 551 RWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIK 610

Query: 568 EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHS 627
             GYVP T  VL D+D E+KE  +  HSEKLA+AF L++T  G  IRI KNLR+CEDCHS
Sbjct: 611 RAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHS 670

Query: 628 FTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            TKFISK  N+EI+VRD NRFHHF+NG+CSCGD+W
Sbjct: 671 ATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 123/318 (38%), Gaps = 62/318 (19%)

Query: 16  PYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSL----------SSRNKNELIQSLCKQGNL 65
           P+  N++ H+       CCC   + S+ P S            S   + +I    + GN 
Sbjct: 262 PHVRNTLVHM------YCCCCQ-DGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNS 314

Query: 66  RQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKL 121
            +A+ +          P + T   +L +C    +L     + S++      +   L   L
Sbjct: 315 ARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNAL 374

Query: 122 INVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
           I++++    VD A  VF + + RTI  W ++   L + GRG E + ++  M     G+  
Sbjct: 375 IDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEM--MEQGVDP 432

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
           D   +  VL AC  S     L+  G         H Y   +  M +++     +GC    
Sbjct: 433 DDVAFIGVLSACSHS----GLVDKG---------HYYFNTMENMFSIVPKIEHYGC---- 475

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
                            M+   +R G   EALE  R M +E     PN V   S++ AC 
Sbjct: 476 -----------------MVDMLSRAGRVNEALEFVRAMPVE-----PNQVIWRSIVTACH 513

Query: 302 ALAALEQGKMIHGYILRR 319
           A   L+ G+ +   ++RR
Sbjct: 514 ARGELKLGESVAKELIRR 531


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/606 (38%), Positives = 362/606 (59%), Gaps = 8/606 (1%)

Query: 57  QSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPF 116
           + +C+   L Q +     +    + T   +L  C   + L     +H +   +G   +  
Sbjct: 284 EDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNEL 343

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           +    I  Y+   ++  +  VFD    +T+  WNAL           + L+LY +M  T 
Sbjct: 344 VANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQM--TD 401

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
           +G+  D FT   +L AC         L +G+EIH   LR+G      I  +L+ +Y   G
Sbjct: 402 SGLDPDWFTIGSLLLACSR----MKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCG 457

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
               A  +F  M  +++VSW+ MIA Y++NG+  EA+ LFR+M+  S  + P  + ++ V
Sbjct: 458 KPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQML--SDGIQPYEIAIMCV 515

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
             AC+ L+AL  GK +H + L+  L   + V S+++ MYA+ G + L Q +FD + ++DV
Sbjct: 516 CGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDV 575

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
            SWN +I+ YG+HG G +A+++F++M+  G+ P   +F  +L ACSHAGLVE+G   F  
Sbjct: 576 ASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQ 635

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE 476
           M   H I P +EHY C+VD+LGRA ++++A ++IE++  +P  ++W SLL SCRIH N+ 
Sbjct: 636 MLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLG 695

Query: 477 LAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVK 536
           L E+ + +L ELEP    NYVL+++++A +  WD+V+RV+  ++  GLQK  G S IEV 
Sbjct: 696 LGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVG 755

Query: 537 RKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSE 596
            K+++F+  DE  P+ E++      L  ++   GY P T  VL+DL+ E+K  I+ GHSE
Sbjct: 756 GKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSE 815

Query: 597 KLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVC 656
           KLA++FGL+NT+KG  +R+ KNLR+C DCH+  KFISK  N++I+VRD  RFHHFR+G+C
Sbjct: 816 KLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGIC 875

Query: 657 SCGDYW 662
           SCGDYW
Sbjct: 876 SCGDYW 881



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 6/283 (2%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLT-DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR 143
           +LL +C     +     +H  ++    F  D  L T++I +YS   S  D+R VFDK RR
Sbjct: 3   VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 62

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
           + ++ WNA+  A T     E+ + ++  +    T  + D FT   V+KAC     G   L
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISV-TEHKPDNFTLPCVIKACA----GLLDL 117

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
             G+ IH    +      V +   LI MY + G V  A  VF  M  +N+VSW+++I  +
Sbjct: 118 GLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGF 177

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           + NG   E+   FREM++      P+  T+V+VL  CA    +E+G  +HG  ++ GL+ 
Sbjct: 178 SENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNE 237

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
            L V ++L+ MY++C  L   Q +FD  DK+++VSWNS+I  Y
Sbjct: 238 ELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGY 280



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 158/355 (44%), Gaps = 9/355 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS-----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N ++ +  +      A+ + S      E  P   T   ++ +C     L     +H   T
Sbjct: 69  NAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMAT 128

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
                 D F+   LI +Y     V++A  VF+    R +  WN++    +  G  +E   
Sbjct: 129 KMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFN 188

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
            +R M         D  T   VL  C     G   ++ G  +H   ++ G N  + +  +
Sbjct: 189 AFREMLVGEESFVPDVATLVTVLPVCA----GEEDIEKGMAVHGLAVKLGLNEELMVNNS 244

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           LIDMY++   +  A  +F +   KN+VSW++MI  YAR         L ++M  E   + 
Sbjct: 245 LIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMK 304

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
            +  T+++VL  C   + L+  K +HGY  R GL S   V +A +  Y RCG L   + V
Sbjct: 305 ADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERV 364

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
           FD MD + V SWN+L+  Y  +    KA+ ++ +M   G+ P   +  S+L ACS
Sbjct: 365 FDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 419



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 5/162 (3%)

Query: 293 MVSVLQACAALAALEQGKMIHGYI-LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           M  +LQAC     +E G+ +H  +       +   + + ++TMY+ CG     + VFD +
Sbjct: 1   MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL 60

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSHAGLVEEG 410
            ++++  WN+++S+Y  +     A+ IF E+I      P   +   V+ AC  AGL++ G
Sbjct: 61  RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLG 118

Query: 411 -KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
              +   M  +  +   V     ++ + G+   +EEA K+ E
Sbjct: 119 LGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFE 160


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/614 (38%), Positives = 374/614 (60%), Gaps = 13/614 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS--IEPN--PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++    + G  R AL+++    E N  P+  T   +L + +    +S    +H +   
Sbjct: 205 NTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMR 264

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GFD    + T L+++Y+   S++ AR +FD    R +  WN++  A       +E + +
Sbjct: 265 SGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLI 324

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +++M     G++    +    L AC         L+ G+ IH   +  G +  V ++ +L
Sbjct: 325 FQKM--LDEGVKPTDVSVMGALHAC----ADLGDLERGRFIHKLSVELGLDRNVSVVNSL 378

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MY +   V  A  +F ++  + +VSW+AMI  +A+NG   +AL  F +M   S  + P
Sbjct: 379 ISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM--RSRTVKP 436

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           ++ T VSV+ A A L+     K IHG ++R  LD  + V +ALV MYA+CG + + + +F
Sbjct: 437 DTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIF 496

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M +R V +WN++I  YG HG+G  A+++F+EM    + P+ ++F+SV+ ACSH+GLVE
Sbjct: 497 DMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVE 556

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            G   F  M++ + I  S++HY  MVDLLGRA +L EA   I  + ++P   V+G++LG+
Sbjct: 557 AGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGA 616

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C+IH NV  AE+A++RLFEL P + G +VLLA++Y AA MW++V +V+  +  +GL+K P
Sbjct: 617 CQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTP 676

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +E+K +++SF S    HP  ++++A L  L   +KE GYVP T +VL  ++ + KE
Sbjct: 677 GCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKE 735

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           +++  HSEKLA++FGL+NT+ G TI + KNLR+C DCH+ TK+IS    +EI+VRD+ RF
Sbjct: 736 QLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRF 795

Query: 649 HHFRNGVCSCGDYW 662
           HHF+NG CSCGDYW
Sbjct: 796 HHFKNGACSCGDYW 809



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 197/340 (57%), Gaps = 11/340 (3%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           I  N  +H   LLL  C+   SL +   +   +  NG  Q+ F  TKL++++  + SVD+
Sbjct: 31  IPANVYEHPAALLLERCS---SLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDE 87

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  VF+    +   +++ + +        ++ L+ + RM      +    + +TY+LK C
Sbjct: 88  AARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMR--YDDVEPVVYNFTYLLKVC 145

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                  + L+ GKEIH  +++ G++  +  MT L +MYA+   V  A  VF +M  +++
Sbjct: 146 GDE----AELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDL 201

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+ ++A Y++NGMA  ALE+ + M  E  +L P+ +T+VSVL A +AL  +  GK IH
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVKSMCEE--NLKPSFITIVSVLPAVSALRLISVGKEIH 259

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
           GY +R G DS++ + +ALV MYA+CG LE  + +FD M +R+VVSWNS+I +Y  +    
Sbjct: 260 GYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPK 319

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +A+ IF++M+  GV P+ +S +  L AC+  G +E G+ +
Sbjct: 320 EAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI 359



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 208/424 (49%), Gaps = 18/424 (4%)

Query: 55  LIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           +++   K  +L +AL          +EP     TY  LL  C     L     +H  L  
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTY--LLKVCGDEAELRVGKEIHGLLVK 163

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GF  D F +T L N+Y+    V++AR VFD+   R +  WN +    +  G     LE+
Sbjct: 164 SGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEM 223

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            + M      ++    T   VL A  A      L+  GKEIH   +R G++ +V+I T L
Sbjct: 224 VKSM--CEENLKPSFITIVSVLPAVSA----LRLISVGKEIHGYAMRSGFDSLVNISTAL 277

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +DMYA+ G +  A  +F  M  +NVVSW++MI  Y +N    EA+ +F++M+ E   + P
Sbjct: 278 VDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEG--VKP 335

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
             V+++  L ACA L  LE+G+ IH   +  GLD  + VV++L++MY +C +++    +F
Sbjct: 336 TDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMF 395

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             +  R +VSWN++I  +  +G    A+  F +M    V P   ++VSV+ A +   +  
Sbjct: 396 GKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITH 455

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
             K +   + +  + + +V     +VD+  +   +   A++I D+  E     W +++  
Sbjct: 456 HAKWIHGVVMRSCLDK-NVFVTTALVDMYAKCGAI-MIARLIFDMMSERHVTTWNAMIDG 513

Query: 469 CRIH 472
              H
Sbjct: 514 YGTH 517



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 154/313 (49%), Gaps = 11/313 (3%)

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           S LK  ++I   V ++G        T L+ ++ R+G V  A  VF  +  K  V +  M+
Sbjct: 48  SSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTML 107

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             +A+     +AL+ F  M  +  D+ P       +L+ C   A L  GK IHG +++ G
Sbjct: 108 KGFAKVSDLDKALQFFVRMRYD--DVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
               L  ++ L  MYA+C ++   + VFD M +RD+VSWN++++ Y  +G    A+++ K
Sbjct: 166 FSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVK 225

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE-SMRKEHMIRPSVEHYACMVDLLGR 439
            M    + PS I+ VSVL A S   L+  GK +   +MR        V     +VD+  +
Sbjct: 226 SMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSG--FDSLVNISTALVDMYAK 283

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE--LEPTNAGNYV 497
              LE A ++ + + +E     W S++ +   + N + A    +++ +  ++PT+     
Sbjct: 284 CGSLETARQLFDGM-LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVS--- 339

Query: 498 LLADVYAAADMWD 510
           ++  ++A AD+ D
Sbjct: 340 VMGALHACADLGD 352


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/558 (41%), Positives = 357/558 (63%), Gaps = 39/558 (6%)

Query: 137 VFDKTRRRT-IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
           +F+K   +T ++ WN++   L  +G   E L  +  M      ++ +R T+   +K+C A
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLS--LKPNRSTFPCAIKSCSA 88

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG------------------- 236
                  L  G++ H   L  G+   + + + L+DMY++ G                   
Sbjct: 89  ----LLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVS 144

Query: 237 -CVMYAGFV-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
              M  G+V           F  MA ++V+SW+++IA YA+NGM+ E++E+F  M+ +  
Sbjct: 145 WTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDG- 203

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
           ++  N+VT+ +VL ACA   +   GK IH  +++ GL+S + V ++++ MY +CGK+E+ 
Sbjct: 204 EINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMA 263

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           +  FD M +++V SW+++++ YG+HG+  +A+++F EM   GV P+ I+FVSVL ACSHA
Sbjct: 264 RKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHA 323

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           GL+EEG   F++M  E  + P VEHY CMVDLLGRA  L+EA  +I+ +++ P   VWG+
Sbjct: 324 GLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGA 383

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LLG+CR+H NV+L E ++++LFEL+P N G YVLL+++YA A  W++V+R++ L++  GL
Sbjct: 384 LLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGL 443

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
            K PG S +++K +++ F+  D  HPQ E+++  L  LS +++E GYVP    VL+D+  
Sbjct: 444 VKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGH 503

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           EEKE ++  HSEKLAVAFG++NT  G TI I KNLR+C DCH+  KFISK  ++EI+VRD
Sbjct: 504 EEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRD 563

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHFR+G+CSCGDYW
Sbjct: 564 SKRFHHFRDGLCSCGDYW 581



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 159/358 (44%), Gaps = 52/358 (14%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I  L + G+  +AL   S    +   P + T+   + SC+    L      H     
Sbjct: 45  NSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALI 104

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI---------YV----------- 148
            GF+ D F+ + L+++YS    + DAR +FD+   R I         YV           
Sbjct: 105 FGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRV 164

Query: 149 -----------WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
                      WN++       G   E +E++ RM   G  I  +  T + VL AC  S 
Sbjct: 165 FDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGE-INYNAVTLSAVLLACAHSG 223

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                 + GK IH  V++ G    V + T++IDMY + G V  A   F +M  KNV SWS
Sbjct: 224 SQ----RLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWS 279

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-----KMI 312
           AM+A Y  +G A EALE+F EM M    + PN +T VSVL AC+    LE+G      M 
Sbjct: 280 AMVAGYGMHGHAKEALEVFYEMNMAG--VKPNYITFVSVLAACSHAGLLEEGWHWFKAMS 337

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR-DVVSWNSLISSYGVH 369
           H + +  G++        +V +  R G L+    +   M  R D V W +L+ +  +H
Sbjct: 338 HEFDVEPGVEH----YGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMH 391


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/614 (37%), Positives = 373/614 (60%), Gaps = 13/614 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLSI--EPN--PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++    + G  R AL+++++  E N  P+  T   +L + +    +     +H +   
Sbjct: 205 NTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMR 264

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GFD    + T L+++Y+   S+  AR +FD    R +  WN++  A       +E + +
Sbjct: 265 AGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVI 324

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +++M     G++    +    L AC         L+ G+ IH   +    +  V ++ +L
Sbjct: 325 FQKM--LDEGVKPTDVSVMGALHAC----ADLGDLERGRFIHKLSVELELDRNVSVVNSL 378

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MY +   V  A  +F ++  + +VSW+AMI  +A+NG   EAL  F +M  ++  + P
Sbjct: 379 ISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQM--QARTVKP 436

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           ++ T VSV+ A A L+     K IHG ++R  LD  + V +ALV MYA+CG + + + +F
Sbjct: 437 DTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIF 496

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M +R V +WN++I  YG HG G  A+++F+EM    + P+ ++F+SV+ ACSH+GLVE
Sbjct: 497 DMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVE 556

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            G   F  M++ + I PS++HY  MVDLLGRA +L EA   I  + ++P   V+G++LG+
Sbjct: 557 AGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGA 616

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C+IH NV  AE+ ++RLFEL P + G +VLLA++Y AA MW++V +V+  +  +GL+K P
Sbjct: 617 CQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTP 676

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +E+K +++SF S    HP  ++++A L  L  ++KE GYVP T ++L  L+ + KE
Sbjct: 677 GCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GLEDDVKE 735

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           +++  HSEKLA++FGL+NT+ G TI + KNLR+C DCH+ TK+IS    +EI+VRD+ RF
Sbjct: 736 QLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRF 795

Query: 649 HHFRNGVCSCGDYW 662
           HHF+NG CSCGDYW
Sbjct: 796 HHFKNGACSCGDYW 809



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 196/340 (57%), Gaps = 11/340 (3%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           I  N  +H   LLL  C+   SL +  ++   +  NG  Q+    TKL++++  + SVD+
Sbjct: 31  IPANVYEHPAALLLERCS---SLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDE 87

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  VF+   ++   ++  + +        ++ L+ + RM      +    + +TY+LK C
Sbjct: 88  AARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMR--DDEVEPVVYNFTYLLKVC 145

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                  + L+ GKEIH  +++ G++  +  MT L +MYA+   V  A  VF +M  +++
Sbjct: 146 GDE----AELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDL 201

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+ ++A Y++NGMA  ALE+   M  E  +L P+ +T+VSVL A +AL  +  GK IH
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVNLMCEE--NLKPSFITIVSVLPAVSALRLIRIGKEIH 259

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
           GY +R G DS++ + +ALV MYA+CG L+  + +FD M +R+VVSWNS+I +Y  +    
Sbjct: 260 GYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPK 319

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +A+ IF++M+  GV P+ +S +  L AC+  G +E G+ +
Sbjct: 320 EAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI 359



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 212/437 (48%), Gaps = 18/437 (4%)

Query: 55  LIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +++   K  +L +AL         E  P  + +  LL  C     L     +H  L  +G
Sbjct: 106 MLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           F  D F +T L N+Y+    V +AR VFD+   R +  WN +    +  G     LE+  
Sbjct: 166 FSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVN 225

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M      ++    T   VL A  A      L++ GKEIH   +R G++ +V+I T L+D
Sbjct: 226 LM--CEENLKPSFITIVSVLPAVSA----LRLIRIGKEIHGYAMRAGFDSLVNIATALVD 279

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MYA+ G +  A  +F  M  +NVVSW++MI  Y +N    EA+ +F++M+ E   + P  
Sbjct: 280 MYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEG--VKPTD 337

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           V+++  L ACA L  LE+G+ IH   +   LD  + VV++L++MY +C +++    +F  
Sbjct: 338 VSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGK 397

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           +  R +VSWN++I  +  +G   +A+  F +M    V P   ++VSV+ A +   +    
Sbjct: 398 LQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHA 457

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           K +   + + + +  +V     +VD+  +   +   A++I D+  E     W +++    
Sbjct: 458 KWIHGVVMR-NCLDKNVFVTTALVDMYAKCGAI-MIARLIFDMMSERHVTTWNAMIDGYG 515

Query: 471 IHCNVELAERASKRLFE 487
            H       +A+  LFE
Sbjct: 516 THG----IGKAALELFE 528



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 151/313 (48%), Gaps = 11/313 (3%)

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           S LK  + I   + ++G        T L+ ++ R+G V  A  VF  +  K  V +  M+
Sbjct: 48  SSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTML 107

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             +A+     +AL+ F  M     ++ P       +L+ C   A L  GK IHG +++ G
Sbjct: 108 KGFAKVSDLDKALKFFVRM--RDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
               L  ++ L  MYA+C ++   + VFD M +RD+VSWN++++ Y  +G    A+++  
Sbjct: 166 FSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVN 225

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE-SMRKEHMIRPSVEHYACMVDLLGR 439
            M    + PS I+ VSVL A S   L+  GK +   +MR        V     +VD+  +
Sbjct: 226 LMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAG--FDSLVNIATALVDMYAK 283

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE--LEPTNAGNYV 497
              L + A+++ D  +E     W S++ +   + N + A    +++ +  ++PT+     
Sbjct: 284 CGSL-KTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVS--- 339

Query: 498 LLADVYAAADMWD 510
           ++  ++A AD+ D
Sbjct: 340 VMGALHACADLGD 352


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/568 (41%), Positives = 348/568 (61%), Gaps = 12/568 (2%)

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           AL +H +   +G   + F+   LI+VY     + +A  VF     R +  WN++  A   
Sbjct: 187 ALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQ 246

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G+    +EL+  M    +G+  D    T V  A   + CG  L    K +H  V R G+
Sbjct: 247 GGKVAAAVELFHGM--MESGVCPD--VLTLVSLASAVAQCGDEL--GAKSVHCYVRRRGW 300

Query: 219 N-GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
           + G +     ++DMYA+   +  A  VF  +  ++VVSW+ +I  Y +NG+A EA+ ++ 
Sbjct: 301 DVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYN 360

Query: 278 EMIMESHD-LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
           +M   +H+ L P   T VSVL A + L  L+QG  +H   ++ GL+  + V + L+ +YA
Sbjct: 361 DM--HNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYA 418

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CGKL     +F+HM +R    WN++I+  GVHG+G KA+ +F +M    + P  ++FVS
Sbjct: 419 KCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVS 478

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           +L ACSHAGLV++G+  F+ M+  + I P  +HY CMVD+LGRA +L+EA + I+ + I+
Sbjct: 479 LLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIK 538

Query: 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516
           P   VWG+LLG+CRIH NVE+ + AS+ LFEL+P N G YVL++++YA    WD V  V+
Sbjct: 539 PDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVR 598

Query: 517 RLLEARGLQKVPGRSRIEVKRKMYSFVS--VDEFHPQFEQLHALLINLSAEMKEKGYVPQ 574
            L+  + LQK PG S +EVK  +  F S    E HPQ E++   L +L A+MK  GYVP 
Sbjct: 599 SLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPD 658

Query: 575 TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
              VL D++ +EKE+I+  HSE+LA+AFG+INT  G  + I KNLR+C DCHS TK+ISK
Sbjct: 659 YSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISK 718

Query: 635 FANKEILVRDVNRFHHFRNGVCSCGDYW 662
              +EI+VRD NRFHHF++G CSCGD+W
Sbjct: 719 ITEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 193/361 (53%), Gaps = 16/361 (4%)

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           F    L++ Y  F  V +A  VFD+   R +  WNA+   L    R  + + L  RM   
Sbjct: 103 FASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRM--V 160

Query: 176 GTGIRSDRFTYTYVLKACVA-SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
           G G+  D  T + VL  CV       +L+     +H   ++HG +G + +   LID+Y +
Sbjct: 161 GEGVAGDAVTLSSVLPMCVVLGDRALALV-----MHVYAVKHGLSGELFVCNALIDVYGK 215

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A +VF  MA++++V+W+++I+   + G    A+ELF  M MES  +CP+ +T+V
Sbjct: 216 LGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGM-MES-GVCPDVLTLV 273

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLD-SILPVVSALVTMYARCGKLELGQCVFDHMDK 353
           S+  A A        K +H Y+ RRG D   +   +A+V MYA+  K++  Q VFD++  
Sbjct: 274 SLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPD 333

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKM 412
           RDVVSWN+LI+ Y  +G   +AI+I+ +M  H G+ P   +FVSVL A S+ G +++G M
Sbjct: 334 RDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQG-M 392

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRI 471
              ++  +  +   V    C++DL  +  KL EA  + E + R   GP  W +++    +
Sbjct: 393 RMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGP--WNAIIAGLGV 450

Query: 472 H 472
           H
Sbjct: 451 H 451



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 10/276 (3%)

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFGC 237
           +R D FT+  +++A    +          ++HA  LR G  +  V    +L+  Y RFG 
Sbjct: 65  LRPDSFTFPPLVRAAPGPASA-------AQLHACALRLGLLHPNVFASGSLVHAYLRFGR 117

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           V  A  VF +M  ++V +W+AM++   RN  A +A+ L   M+ E   +  ++VT+ SVL
Sbjct: 118 VAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEG--VAGDAVTLSSVL 175

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
             C  L       ++H Y ++ GL   L V +AL+ +Y + G L     VF  M  RD+V
Sbjct: 176 PMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLV 235

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           +WNS+IS+    G    A+++F  M+  GV P  ++ VS+  A +  G     K +   +
Sbjct: 236 TWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYV 295

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           R+       +     MVD+  + +K++ A K+ ++L
Sbjct: 296 RRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNL 331



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 13/169 (7%)

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA---LVTMYARCG 339
           +H L P+S T   +++A    A+  Q   +H   LR GL  + P V A   LV  Y R G
Sbjct: 62  AHPLRPDSFTFPPLVRAAPGPASAAQ---LHACALRLGL--LHPNVFASGSLVHAYLRFG 116

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           ++     VFD M +RDV +WN+++S    +     A+ +   M+  GV+   ++  SVL 
Sbjct: 117 RVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLP 176

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC--MVDLLGRANKLEEA 446
            C   G      ++     K  +   S E + C  ++D+ G+   L EA
Sbjct: 177 MCVVLGDRALALVMHVYAVKHGL---SGELFVCNALIDVYGKLGMLTEA 222


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/640 (37%), Positives = 360/640 (56%), Gaps = 76/640 (11%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           I  L     L+  L  LS    P   +Y  +    T  N L     VH+H+   G     
Sbjct: 46  ISPLTISATLQNLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTA 105

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
            + +K++  Y+    +D +  VF                                  NG 
Sbjct: 106 LVGSKMVAFYASSGDIDSSVSVF----------------------------------NGI 131

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
           G     D FT+ +VLK    SS     +  GK +H  +LR G    +++ T+LI +Y + 
Sbjct: 132 G-----DYFTFPFVLK----SSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKC 182

Query: 236 GCVMYAGFVFSQMAVK-------------------------------NVVSWSAMIACYA 264
           G +  AG VF  M ++                               N+VSW+ MI+ Y+
Sbjct: 183 GEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYS 242

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           ++G+A +AL LF EM+ E   + PN VT++SVL ACA L+ LE+G+ IH    R GL+S 
Sbjct: 243 QSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSN 302

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             V+ AL  MYA+CG L   +  FD +++  +++++WN++I++Y  +G+G +A+  F+EM
Sbjct: 303 ASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREM 362

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
           I  G+ P  I+F  +L  CSH+GLV+ G   F  M   + I P VEHYAC+ DLLGRA +
Sbjct: 363 IQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGR 422

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           L EA+K++ ++ +  GP +WGSLL +CR H N+E+AE A+++LF LEP N GNYVLL+++
Sbjct: 423 LAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNM 482

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           YA A  W EV +++ +++++G +K PG S IE+  K + F+  D  HPQ ++++  L  L
Sbjct: 483 YAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEAL 542

Query: 563 SAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLC 622
             +MK  GY P T  VL+D+  EEKE  ++ HSEKLAVAFG++NT     +R+TKNLR+C
Sbjct: 543 PEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRIC 602

Query: 623 EDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            DCH+   FIS+   +E++VRD+NRFHHF+ G CSCGDYW
Sbjct: 603 GDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/616 (38%), Positives = 368/616 (59%), Gaps = 20/616 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQH----TYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I   C+ GN   AL VL+            T   +L  C   + + + + +H H+  
Sbjct: 191 NAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK 250

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +G D D F+   LIN+YS F  + DA+ VFD+   R +  WN++  A          L  
Sbjct: 251 HGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRF 310

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL-----RHGYNGIVH 223
           ++ M   G  IR D  T        V+ +  FS L   + I  S+L     R   +  V 
Sbjct: 311 FKGMQLGG--IRPDLLT-------VVSLTSIFSQLSD-QRISRSILGFVIRREWLDKDVV 360

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           I   L++MYA+ G +  A  VF Q+  K+ +SW+ ++  Y +NG+A EA++ +  M+ E 
Sbjct: 361 IGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAY-NMMEEC 419

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
            D  PN  T VS++ A + + AL+QG  IH  +++  L   + V + L+ +Y +CG+LE 
Sbjct: 420 RDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLED 479

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              +F  + +   V WN++I+S G+HG G +A+Q+FK+M+   V    I+FVS+L ACSH
Sbjct: 480 AMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSH 539

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
           +GLV+EG+  F+ M+KE+ I+PS++HY CMVDLLGRA  LE+A +++ ++ I+P   +WG
Sbjct: 540 SGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWG 599

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           +LL +C+I+ N EL   AS RL E++  N G YVLL+++YA  + W+ V +V+ L   RG
Sbjct: 600 ALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRG 659

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
           L+K PG S + V  K   F + ++ HP++ +++  L  LSA+MK  GYVP    V  D++
Sbjct: 660 LRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIE 719

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            +EKE+I+  HSE+LA+AFG+I+T     IRI KNLR+C DCH+ TK+IS+ + +EI+VR
Sbjct: 720 EDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVR 779

Query: 644 DVNRFHHFRNGVCSCG 659
           D NRFHHF++G+CSC 
Sbjct: 780 DSNRFHHFKDGICSCA 795



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 175/317 (55%), Gaps = 14/317 (4%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           +  L  SC + N+      +H+ L   G  Q+  L TKLIN+Y     +  +R  FD   
Sbjct: 25  FNALFNSCVNVNATK---KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGT--GTGIRSDRFTYTYVLKACVASSCGF 200
           ++ I+ WN++  A    G+  E +    ++     G  +R D +T+  +LKACV+     
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS----- 136

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             L  GK++H  V + G+   V +  +L+ +Y+R+G +  A  VF  M VK+V SW+AMI
Sbjct: 137 --LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMI 194

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           + + +NG A  AL +   M  E   +  +++T+ S+L  CA    +  G +IH ++L+ G
Sbjct: 195 SGFCQNGNAAGALGVLNRMKGEGVKM--DTITVASILPVCAQSDDVINGVLIHLHVLKHG 252

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           LDS + V +AL+ MY++ G+L+  Q VFD M+ RD+VSWNS+I++Y  +     A++ FK
Sbjct: 253 LDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFK 312

Query: 381 EMIYHGVSPSPISFVSV 397
            M   G+ P  ++ VS+
Sbjct: 313 GMQLGGIRPDLLTVVSL 329



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 132/264 (50%), Gaps = 7/264 (2%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           K++HA +L  G +  + + T LI++Y   G +  +   F  +  KN+ SW+++I+ Y R 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 267 GMAFEALELFREM--IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           G   EA+    ++  +     L P+  T   +L+AC +L     GK +H  + + G +  
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV---DGKKVHCCVFKMGFEDD 155

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + V ++LV +Y+R G L++   VF  M  +DV SWN++IS +  +G    A+ +   M  
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG 215

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            GV    I+  S+L  C+ +  V  G ++   + K H +   V     ++++  +  +L+
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK-HGLDSDVFVSNALINMYSKFGRLQ 274

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGS 468
           +A  + + + +      W S++ +
Sbjct: 275 DAQMVFDQMEVRDLVS-WNSIIAA 297


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/586 (39%), Positives = 365/586 (62%), Gaps = 9/586 (1%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P   ++  +L +C+   +L     VH  +  +GF+ D F+   L+ +Y+    +  A  
Sbjct: 170 SPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANA 229

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF +   RTI  W ++       G+  E L ++  M  T   +R D      VL+A    
Sbjct: 230 VFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTN--VRPDWIALVSVLRAYT-- 285

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+HGK IH  V++ G      ++ +L  +YA+ G VM A   F+Q+   +++ W
Sbjct: 286 --DVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFW 343

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AMI+ Y +NG A EA+ELFR  +M+S ++ P+S+T+ S + ACA + +LE  + +  YI
Sbjct: 344 NAMISGYVKNGYAEEAIELFR--LMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYI 401

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
                 + + V ++L+  YA+CG +++ + VFD +  +DVV W++++  YG+HG G ++I
Sbjct: 402 SMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESI 461

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F  M   GVSP+ ++FV +L AC ++GLVEEG  LF  MR ++ I P  +HYAC+VDL
Sbjct: 462 ILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMR-DYGIEPRHQHYACVVDL 520

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA  L+ A   + ++ IEPG  VWG+LL +C+IH +V L E A++RLF L+P N G+Y
Sbjct: 521 LGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHY 580

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           V L+++YA++ +WD V +V+ L+  +GL K  G S IE+  K+ +F + D+ HP+ +++ 
Sbjct: 581 VQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIF 640

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             + +L   +KE G+VP T+ VL+DL+ EE E  +  HSE+LA+A+GLI+T  G T+RIT
Sbjct: 641 EEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRIT 700

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR C++CH+  K ISK  ++EI+VRD  RFHHF++G CSCGDYW
Sbjct: 701 KNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 197/372 (52%), Gaps = 10/372 (2%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            +++ L   G     FL+ KL+N  S+   V  AR +FDK     +++WNA+ R  +  G
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
                +E+Y RM      +  D F++  VLKAC A       L+ G+ +H  + RHG+  
Sbjct: 153 FFGHAIEMYARMQ--VACVSPDGFSFPCVLKACSA----LPALEMGRRVHGQIFRHGFES 206

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            V +   L+ +YA+ G ++ A  VF ++  + +VSW+++I+ YA+NG   EAL +F E  
Sbjct: 207 DVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSE-- 264

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           M   ++ P+ + +VSVL+A   +  LE GK IHG +++ GL+    ++ +L ++YA+CG 
Sbjct: 265 MRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGH 324

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           + + +  F+ ++   ++ WN++IS Y  +GY  +AI++F+ M    + P  I+  S + A
Sbjct: 325 VMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAA 384

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
           C+  G +E  + + E +      R  V     ++D   +   + + A+ + D   +    
Sbjct: 385 CAQIGSLELARWMDEYISMSEF-RNDVIVNTSLIDTYAKCGSV-DMARFVFDRIPDKDVV 442

Query: 461 VWGSLLGSCRIH 472
           VW +++    +H
Sbjct: 443 VWSAMMVGYGLH 454


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/592 (40%), Positives = 353/592 (59%), Gaps = 43/592 (7%)

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
           L D   ++D    T +I  Y     +D AR   D    + +  WNA+       G   E 
Sbjct: 216 LFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEA 275

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH----GYNGI 221
           LE++R+M     GI+ D FTYT VL AC  ++ GF L  HGK++HA +LR       +  
Sbjct: 276 LEMFRKM--YLLGIQWDEFTYTSVLSAC--ANAGFFL--HGKQVHAYILRTEPRPSLDFS 329

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY------------------ 263
           + +   L  +Y + G V  A  VF+QM VK++VSW+A+++ Y                  
Sbjct: 330 LSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPE 389

Query: 264 -------------ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
                        A+NG   E+L+LF  M  E  + C         + ACA LAAL  G+
Sbjct: 390 RNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPC--DYAFAGAIIACAWLAALMHGR 447

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +H  ++R G DS L   +AL+TMYA+CG +E   C+F  M   D VSWN++I++ G HG
Sbjct: 448 QLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHG 507

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
           +G +A+++F+ M+   + P  I+F++VL  CSHAGLVEEG   F+SM   + I P  +HY
Sbjct: 508 HGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHY 567

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
           A M+DLL RA K  EA  +IE + +EPGP +W +LL  CRIH N++L  +A++RLFEL P
Sbjct: 568 ARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMP 627

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
            + G YVLL+++YA    WD+V +V++L+  +G++K PG S IEV+ K++ F+  D  HP
Sbjct: 628 QHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHP 687

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           + + ++  L  L  +M++ GY+P TK VL+D+++E+KE ++  HSEKLAV FGL+    G
Sbjct: 688 EVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLG 747

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            T+R+ KNLR+C DCH+  KF+SK   +EI+VRD  RFHHF+NG CSCG+YW
Sbjct: 748 ATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 179/421 (42%), Gaps = 98/421 (23%)

Query: 83  YELLLLSCTHHN--SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           Y   L  C  HN  S S A  VH+H+  +GF    +++ +LI+VY     +  A H+FD+
Sbjct: 16  YAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDE 75

Query: 141 TRR---------------------------------RTIYVWNALFRALTLAGRGEEVLE 167
            R+                                 R    +NA+    +    G   +E
Sbjct: 76  IRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIE 135

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL----KHGKEIHASVLRHGYNGIVH 223
           L+R +     G R D FT+T VL A        +L+    K  ++IH +V++ G   +  
Sbjct: 136 LFRDL--LRNGFRPDNFTFTSVLGA-------LALIVEDEKQCQQIHCAVVKSGSGFVTS 186

Query: 224 IMTTLIDMYARFG-----------------------------CVMYAGFV---------- 244
           ++  L+ ++ +                                 M AG+V          
Sbjct: 187 VLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQ 246

Query: 245 -FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
               M  K VV+W+AMI+ Y  +G   EALE+FR+M +    +  +  T  SVL ACA  
Sbjct: 247 FLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLG--IQWDEFTYTSVLSACANA 304

Query: 304 AALEQGKMIHGYILRR----GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
                GK +H YILR      LD  L V +AL T+Y +CGK++  + VF+ M  +D+VSW
Sbjct: 305 GFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSW 364

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           N+++S Y   G   +A   F+EM    +    +++  ++   +  G  EE   LF  M+ 
Sbjct: 365 NAILSGYVNAGRIDEAKSFFEEMPERNL----LTWTVMISGLAQNGFGEESLKLFNRMKS 420

Query: 420 E 420
           E
Sbjct: 421 E 421



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 2/116 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  + +   +++C    +L     +H+ L   GFD        LI +Y+    V+ A  +
Sbjct: 425 PCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCL 484

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           F          WNA+  AL   G G + LEL+  M      I  DR T+  VL  C
Sbjct: 485 FLTMPYLDSVSWNAMIAALGQHGHGAQALELFELM--LKEDILPDRITFLTVLSTC 538


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/619 (37%), Positives = 370/619 (59%), Gaps = 21/619 (3%)

Query: 53   NELIQSLCKQGNLRQA-----LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNV----H 103
            N +I S C Q +L +      +D+L     P   T   +L +C+   SL D LN+    H
Sbjct: 974  NSMISS-CAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACS---SLIDGLNISRQIH 1029

Query: 104  SHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE 163
             H    G   D F+ T LI+VYS    +++A  +F       +  WNA+     +   G+
Sbjct: 1030 VHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGK 1089

Query: 164  EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
            + LEL+  ++ +G   +SD+ T     KAC    C   LL  GK+IHA  ++ G++  +H
Sbjct: 1090 KALELFSLIHKSGE--KSDQITLATAAKAC---GC-LVLLDQGKQIHAHAIKAGFDSDLH 1143

Query: 224  IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
            + + ++DMY + G ++ AG VF+ ++  + V+W++MI+    NG   +AL ++  M    
Sbjct: 1144 VNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM--RQ 1201

Query: 284  HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
              + P+  T  ++++A + + ALEQG+ +H  +++    S   V ++LV MYA+CG +E 
Sbjct: 1202 SRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIED 1261

Query: 344  GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
               +F  M+ R++  WN+++     HG   +A+ +FK M  HG+ P  +SF+ +L ACSH
Sbjct: 1262 AYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSH 1321

Query: 404  AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
            AGL  E      SM  ++ I P +EHY+C+VD LGRA  ++EA K+IE +  +    +  
Sbjct: 1322 AGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINR 1381

Query: 464  SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
            +LLG+CRI  +VE  +R + RLF LEP ++  YVLL+++YAAA+ WD+V   +++++ + 
Sbjct: 1382 ALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKN 1441

Query: 524  LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
            ++K PG S I+VK  ++ FV  D  HPQ + ++  +  +   ++E GYVP T+ VL D++
Sbjct: 1442 VKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVE 1501

Query: 584  AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
             EEKER +  HSEKLA+A+GLI+T    TIR+ KNLR+C DCH+  K+ISK   +EI++R
Sbjct: 1502 DEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLR 1561

Query: 644  DVNRFHHFRNGVCSCGDYW 662
            D NRFHHFR+GVCSCGDYW
Sbjct: 1562 DANRFHHFRDGVCSCGDYW 1580



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 189/378 (50%), Gaps = 11/378 (2%)

Query: 102  VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
            VH     +G D D  +   L+N+YS       AR VF+  +   +  WN++  +   +  
Sbjct: 926  VHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSL 985

Query: 162  GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
             EE + L+  ++    G++ D FT   VL+AC +   G ++    ++IH   L+ G    
Sbjct: 986  EEESVNLF--IDLLHEGLKPDHFTLASVLRACSSLIDGLNI---SRQIHVHALKTGNIAD 1040

Query: 222  VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
              + TTLID+Y++ G +  A F+F      ++  W+AM+  Y       +ALELF  +I 
Sbjct: 1041 SFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELF-SLIH 1099

Query: 282  ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
            +S +   + +T+ +  +AC  L  L+QGK IH + ++ G DS L V S ++ MY +CG +
Sbjct: 1100 KSGEKS-DQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDM 1158

Query: 342  ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
                 VF+++   D V+W S+IS    +G   +A++I+  M    V P   +F +++ A 
Sbjct: 1159 VNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKAS 1218

Query: 402  SHAGLVEEGKMLFESMRKEHMIR-PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
            S    +E+G+ L  ++ K   +  P V     +VD+  +   +E+A ++ + + +     
Sbjct: 1219 SCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIA 1275

Query: 461  VWGSLLGSCRIHCNVELA 478
            +W ++L     H N E A
Sbjct: 1276 LWNAMLVGLAQHGNAEEA 1293



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 190/404 (47%), Gaps = 31/404 (7%)

Query: 98   DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR-----------RRTI 146
            +A  + S    +G   D F V  ++N  S  +  D+ + + D+ +              +
Sbjct: 811  EAFQLFSEFHRSGLRPDEFSVQLILNGVSEVN-WDEGKWLADQVQAYAAKLSLSDDNPDV 869

Query: 147  YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206
            + WN        AG     +E +  MNG    I  D  T   VL A      G   L+ G
Sbjct: 870  FCWNKKLSECLWAGDNWGAIECFVNMNGLN--IDYDAVTLLVVLAAV----AGTDDLELG 923

Query: 207  KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
            K++H   ++ G +  V +  +L++MY++ GC  +A  VF+ M   +++SW++MI+  A++
Sbjct: 924  KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 983

Query: 267  GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL-AALEQGKMIHGYILRRGLDSIL 325
             +  E++ LF +++ E   L P+  T+ SVL+AC++L   L   + IH + L+ G  +  
Sbjct: 984  SLEEESVNLFIDLLHEG--LKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADS 1041

Query: 326  PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
             V + L+ +Y++ GK+E  + +F + D  D+  WN+++  Y +   G KA+++F  +   
Sbjct: 1042 FVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKS 1101

Query: 386  GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH----YACMVDLLGRAN 441
            G     I+  +   AC    L+++GK +       H I+   +      + ++D+  +  
Sbjct: 1102 GEKSDQITLATAAKACGCLVLLDQGKQI-----HAHAIKAGFDSDLHVNSGILDMYIKCG 1156

Query: 442  KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
             +  A  I+ +    P    W S++  C  + N + A R   R+
Sbjct: 1157 DMVNAG-IVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM 1199



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 171/376 (45%), Gaps = 37/376 (9%)

Query: 79   TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
            T+ T   +L  C +   L  A  VH +    G + D F+   L+N+YS    + DAR +F
Sbjct: 726  TRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLF 785

Query: 139  DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
            D  R R + +WN + +     G  +E  +L+   +   +G+R D F+   +L      + 
Sbjct: 786  DWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFH--RSGLRPDEFSVQLILNGVSEVN- 842

Query: 199  GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
                   GK +   V                          YA  +       +V  W+ 
Sbjct: 843  ----WDEGKWLADQV------------------------QAYAAKLSLSDDNPDVFCWNK 874

Query: 259  MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
             ++     G  + A+E F  + M   ++  ++VT++ VL A A    LE GK +HG  ++
Sbjct: 875  KLSECLWAGDNWGAIECF--VNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVK 932

Query: 319  RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
             GLDS + V ++LV MY++ G     + VF+ M   D++SWNS+ISS        +++ +
Sbjct: 933  SGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNL 992

Query: 379  FKEMIYHGVSPSPISFVSVLGACSH--AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            F ++++ G+ P   +  SVL ACS    GL    ++   +++  ++    V     ++D+
Sbjct: 993  FIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVA--TTLIDV 1050

Query: 437  LGRANKLEEAAKIIED 452
              ++ K+EEA  + ++
Sbjct: 1051 YSKSGKMEEAEFLFQN 1066



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 8/218 (3%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA- 264
           GK  HA ++  G  G   +   L+ MY++ G +  A  VF     +++V+W+A++  YA 
Sbjct: 640 GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 699

Query: 265 ----RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
                +G A E L LFR  ++ +       +T+  VL+ C     L   + +HGY ++ G
Sbjct: 700 SVDSNDGNAQEGLHLFR--LLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIG 757

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           L+  + V  ALV +Y++CG++   + +FD M +RDVV WN ++  Y   G   +A Q+F 
Sbjct: 758 LEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFS 817

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           E    G+ P   S   +L   S     +EGK L + ++
Sbjct: 818 EFHRSGLRPDEFSVQLILNGVSEVNW-DEGKWLADQVQ 854


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/618 (37%), Positives = 360/618 (58%), Gaps = 41/618 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL SC    +  +   +H  +   GFD D ++ T LI++Y     ++DA+ V
Sbjct: 101 PNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKV 160

Query: 138 FDKTRRRTIYV-------------------------------WNALFRALTLAGRGEEVL 166
            DK+  R +                                 WNA        G  +E L
Sbjct: 161 XDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEAL 220

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL+++M    T +R D  T   VL AC  S      ++ G+++H+ +  HG+   + I+ 
Sbjct: 221 ELFKKM--MKTNVRPDESTMVTVLSACAQSGS----IELGRQVHSWINDHGFGXNLKIVN 274

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LID+Y++ G +  A  +F  ++ K+V+SW+ +I  Y    +  EAL LF++M+      
Sbjct: 275 ALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEK- 333

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELG 344
            PN VTM+S+L ACA L A++ G+ IH YI +R  G+ +   + ++L+ MYA+CG +E  
Sbjct: 334 -PNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 392

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           Q VFD M  R + SWN++I  + +HG    A  IF  M  +G+ P  I+FV +L ACSH+
Sbjct: 393 QQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+++ G+ +F SM +++ + P +EHY CM+DL G +   +EA K+I  + +EP   +W S
Sbjct: 453 GMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCS 512

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +C++H NVEL E  ++ L ++EP N G+YVLL+++YA A+ W+EV + + LL  +G+
Sbjct: 513 LLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGM 572

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +KVPG S IE+   ++ F+  D+FHP+  +++ +L  +   ++E G+VP T  VL +++ 
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 632

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           E KE  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH  TK ISK   +EI+ RD
Sbjct: 633 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 692

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHFR+G CSC DYW
Sbjct: 693 RTRFHHFRDGECSCNDYW 710



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 198/387 (51%), Gaps = 43/387 (11%)

Query: 102 VHSHLTDNGFDQDPFLVTKLIN---VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           +H+ +   G     + ++KL+    +  HFD +  A  VFD  +   + +WN +FR   L
Sbjct: 21  IHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFRGHAL 80

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +      L+LY  M     G+  + +T+ ++LK+C  S       K G+++H  VL+ G+
Sbjct: 81  SSDPVSALKLYVCM--VSLGLLPNSYTFPFLLKSCAKSXA----FKEGQQLHGQVLKFGF 134

Query: 219 NGIVHIMTTLIDMYARFG----------------CVMYAGFV---------------FSQ 247
           +  ++I T+LI MY + G                 V Y   +               F +
Sbjct: 135 DLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDE 194

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           + VK+VVSW+A I+ YA  G   EALELF++M+    ++ P+  TMV+VL ACA   ++E
Sbjct: 195 IPVKDVVSWNAXISGYAETGNYKEALELFKKMM--KTNVRPDESTMVTVLSACAQSGSIE 252

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+ +H +I   G    L +V+AL+ +Y++CG+LE    +F  +  +DV+SWN+LI  Y 
Sbjct: 253 LGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYT 312

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE-HMIRPS 426
                 +A+ +F++M+  G  P+ ++ +S+L AC+H G ++ G+ +   + K    +  +
Sbjct: 313 HMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNA 372

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDL 453
                 ++D+  +   +E A ++ + +
Sbjct: 373 SSLRTSLIDMYAKCGDIEAAQQVFDSM 399



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 77/161 (47%), Gaps = 7/161 (4%)

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV---TMYARCGKLELGQCVFDH 350
           +S+L  C  L +L   ++IH  +++ GL +    +S L+    +      L     VFD 
Sbjct: 6   LSLLHXCKTLQSL---RIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDT 62

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           + +  ++ WN++   + +      A++++  M+  G+ P+  +F  +L +C+ +   +EG
Sbjct: 63  IQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEG 122

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           + L   + K         H + ++ +  +  +LE+A K+ +
Sbjct: 123 QQLHGQVLKFGFDLDLYIHTS-LISMYVQNGRLEDAQKVXD 162


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/607 (40%), Positives = 354/607 (58%), Gaps = 39/607 (6%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  LL SC H N L   L +H+ +  +GF      +T LIN+YS F   D AR VFD T 
Sbjct: 55  YPRLLSSCKHLNPL---LQIHAQIIVSGFKHH-HSITHLINLYSLFHKCDLARSVFDSTP 110

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
             +  +WN++ RA T + +  E LE+Y  M   G G+  D F    +    V        
Sbjct: 111 NPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG-GLERDVF----IGAGLVDMYSKMGD 165

Query: 203 LKHGKEIHASVLRH---GYNGIVHIMT------------------------TLIDMYARF 235
           LK  +E+   + +     +N ++  ++                        T++  YA  
Sbjct: 166 LKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHN 225

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           GC +    +F +M + NV +W+ +IA Y +NG A EA+  F +M +E  +  PNSVT VS
Sbjct: 226 GCFVEVLELFDKMKLGNV-TWNVIIAAYMQNGHAKEAISSFHQMRLE--NFHPNSVTFVS 282

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           VL A A LAA  +G   H  I++ G  S   V ++L+ MYA+CG+L+  + +F+ MD +D
Sbjct: 283 VLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKD 342

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
            VSWN+++S Y VHG+G +AI +F  M    V    +SFVSVL AC HAGLVEEG+ +F 
Sbjct: 343 TVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFH 402

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
           SM  ++ I+P +EHYACMVDLLGRA   +E    I+ + +EP   VWG+LLGSCR+H NV
Sbjct: 403 SMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNV 462

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           +L E A   L +LEP N  ++V+L+ +YA +  W +  + +  +   GL+K PG S +E+
Sbjct: 463 KLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVEL 522

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
           K K+++F   D+ HPQ E +H L   L  +M++ GYVP    VL +++ E+KE  +  HS
Sbjct: 523 KNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHS 582

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           E+LA+ F L+NT  G TI+I KNLR+C DCH+ TKFISK   + I+VRD  RFHHF +G+
Sbjct: 583 ERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGI 642

Query: 656 CSCGDYW 662
           CSC DYW
Sbjct: 643 CSCNDYW 649



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 156/360 (43%), Gaps = 60/360 (16%)

Query: 68  ALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG-FDQDPFLVTKLINVYS 126
           A  V    PNP++  +  ++ + T     ++AL ++  + + G  ++D F+   L+++YS
Sbjct: 102 ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYS 161

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALT--------------------------LAG 160
               +  AR VFDK  +R +  WNA+   L+                          +AG
Sbjct: 162 KMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAG 221

Query: 161 RGE-----EVLELYRRM----------------NGTGT-------GIRSDRFTYTYVLKA 192
                   EVLEL+ +M                NG           +R + F    V   
Sbjct: 222 YAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFV 281

Query: 193 CVASSCGF-SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
            V  +  + +  + G   HA +++ G+     +  +LIDMYA+ G + Y+  +F++M  K
Sbjct: 282 SVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHK 341

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-K 310
           + VSW+AM++ YA +G    A+ LF   +M+   +  +SV+ VSVL AC     +E+G K
Sbjct: 342 DTVSWNAMLSGYAVHGHGDRAIALFS--LMQESQVQIDSVSFVSVLSACRHAGLVEEGRK 399

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
           + H    +  +   L   + +V +  R G  +        M  + D   W +L+ S  +H
Sbjct: 400 IFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMH 459


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/560 (40%), Positives = 353/560 (63%), Gaps = 9/560 (1%)

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
           H+    +G ++   + T +++ Y     +  AR VFD    +    WNA+       G  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
            E L L+ RM   G  +     +    L+AC    C    L  G  +H  ++R G +  V
Sbjct: 244 REALALFNRMVEEGVDVTD--VSVLAALQACGELGC----LDEGMRVHELLVRIGLDSNV 297

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
            +M  LI MY++   V  A  VF ++  +  VSW+AMI   A+NG + +A+ LF  M +E
Sbjct: 298 SVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLE 357

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
             ++ P+S T+VSV+ A A ++   Q + IHGY +R  LD  + V++AL+ MYA+CG++ 
Sbjct: 358 --NVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVN 415

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
           + + +F+   +R V++WN++I  YG HG+G  A+++F+EM   G+ P+  +F+SVL ACS
Sbjct: 416 IARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACS 475

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
           HAGLV+EG+  F SM++++ + P +EHY  MVDLLGRA KL+EA   I+ + ++PG  V+
Sbjct: 476 HAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVY 535

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
           G++LG+C++H NVELAE +++++FEL P     +VLLA++YA A MW +V RV+  +E  
Sbjct: 536 GAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKN 595

Query: 523 GLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
           GLQK PG S I++K ++++F S    H Q +++++ L  L  E+K  GYVP T  + +D+
Sbjct: 596 GLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDV 654

Query: 583 DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILV 642
           + + K +++  HSEKLA+AFGLI T+ G TI+I KNLR+C DCH+ TK IS    +EI++
Sbjct: 655 EDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIM 714

Query: 643 RDVNRFHHFRNGVCSCGDYW 662
           RD+ RFHHF++G CSCGDYW
Sbjct: 715 RDIQRFHHFKDGKCSCGDYW 734



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           M S    P   T  S+L+ CAA   L  G+ +H  +  RG+DS     +AL  MYA+C +
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVL 398
               + VFD M  RD V+WN+L++ Y  +G    A+++   M    G  P  I+ VSVL
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVL 168


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/582 (40%), Positives = 362/582 (62%), Gaps = 18/582 (3%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGF-----DQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           LLLSC   +S      +H+    +G      D   +L+  L++  S    +  A  +F +
Sbjct: 45  LLLSCA--SSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCS---PMSYAHQIFSQ 99

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
            +   I+ WN + R    +      LELYR+M+ +   I  D  TY ++LKA        
Sbjct: 100 IQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSC--IEPDTHTYPFLLKAIAK----L 153

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             ++ G+++H+  +R+G+  +V +  TL+ MYA  G    A  +F  MA +N+V+W+++I
Sbjct: 154 MDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVI 213

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             YA NG   EAL LFREM +   +  P+  TMVS+L ACA L AL  G+  H Y+++ G
Sbjct: 214 NGYALNGRPNEALTLFREMGLRGVE--PDGFTMVSLLSACAELGALALGRRAHVYMVKVG 271

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           LD  L   +AL+ +YA+CG +     VFD M+++ VVSW SLI    V+G+G +A+++FK
Sbjct: 272 LDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFK 331

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           E+   G+ PS I+FV VL ACSH G+V+EG   F+ M++E+ I P +EHY CMVDLLGRA
Sbjct: 332 ELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRA 391

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
             +++A + I+++ ++P   VW +LLG+C IH ++ L E A  +L +LEP ++G+YVLL+
Sbjct: 392 GLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLS 451

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YA+   W +V +V+R +   G++K PG S +E++ +++ FV  D  HPQ E+++  L 
Sbjct: 452 NLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLA 511

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            ++  +K +GYVP    VL D++ EEKE  +  HSEK+A+AF LINT+ G  IR+ KNLR
Sbjct: 512 EITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLR 571

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH   K ISK  ++EI+VRD +RFHHF++G CSC DYW
Sbjct: 572 VCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 158/330 (47%), Gaps = 24/330 (7%)

Query: 53  NELIQSLCKQGNLRQALD------VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I+   +  N   AL+      V  IEP+   HTY  LL +      + +   VHS  
Sbjct: 109 NTMIRGYAESENPMPALELYRQMHVSCIEPD--THTYPFLLKAIAKLMDVREGEKVHSIA 166

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             NGF+   F+   L+++Y+     + A  +F+    R +  WN++     L GR  E L
Sbjct: 167 IRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEAL 226

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            L+R M     G+  D FT   +L AC         L  G+  H  +++ G +G +H   
Sbjct: 227 TLFREMG--LRGVEPDGFTMVSLLSACAE----LGALALGRRAHVYMVKVGLDGNLHAGN 280

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+D+YA+ G +  A  VF +M  K+VVSW+++I   A NG   EALELF+E  +E   L
Sbjct: 281 ALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKE--LERKGL 338

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-SILPVV---SALVTMYARCGKLE 342
            P+ +T V VL AC+    +++G     Y  R   +  I+P +     +V +  R G ++
Sbjct: 339 MPSEITFVGVLYACSHCGMVDEG---FDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVK 395

Query: 343 LGQCVFDHMD-KRDVVSWNSLISSYGVHGY 371
                  +M  + + V W +L+ +  +HG+
Sbjct: 396 QAHEFIQNMPMQPNAVVWRTLLGACTIHGH 425


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/560 (40%), Positives = 353/560 (63%), Gaps = 9/560 (1%)

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
           H+    +G ++   + T +++ Y     +  AR VFD    +    WNA+       G  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
            E L L+ RM   G  +     +    L+AC    C    L  G  +H  ++R G +  V
Sbjct: 244 REALALFNRMVEEGVDVTD--VSVLAALQACGELGC----LDEGMRVHELLVRIGLDSNV 297

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
            +M  LI MY++   V  A  VF ++  +  VSW+AMI   A+NG + +A+ LF  M +E
Sbjct: 298 SVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLE 357

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
             ++ P+S T+VSV+ A A ++   Q + IHGY +R  LD  + V++AL+ MYA+CG++ 
Sbjct: 358 --NVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVN 415

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
           + + +F+   +R V++WN++I  YG HG+G  A+++F+EM   G+ P+  +F+SVL ACS
Sbjct: 416 IARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACS 475

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
           HAGLV+EG+  F SM++++ + P +EHY  MVDLLGRA KL+EA   I+ + ++PG  V+
Sbjct: 476 HAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVY 535

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
           G++LG+C++H NVELAE +++++FEL P     +VLLA++YA A MW +V RV+  +E  
Sbjct: 536 GAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKN 595

Query: 523 GLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
           GLQK PG S I++K ++++F S    H Q +++++ L  L  E+K  GYVP T  + +D+
Sbjct: 596 GLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDV 654

Query: 583 DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILV 642
           + + K +++  HSEKLA+AFGLI T+ G TI+I KNLR+C DCH+ TK IS    +EI++
Sbjct: 655 EDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIM 714

Query: 643 RDVNRFHHFRNGVCSCGDYW 662
           RD+ RFHHF++G CSCGDYW
Sbjct: 715 RDIQRFHHFKDGKCSCGDYW 734



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           M S    P   T  S+L+ CAA   L  G+ +H  +  RG+DS     +AL  MYA+C +
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVL 398
               + VFD M  RD V+WN+L++ Y  +G    A+++   M    G  P  I+ VSVL
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVL 168


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/662 (36%), Positives = 397/662 (59%), Gaps = 55/662 (8%)

Query: 46   SLSSRNK---NELIQSLCKQGNLRQALDV---LSIEP--NPTQHTYELLLLSCTHHNSLS 97
            SL  RN+   N L+    ++G   +AL++   +  E    P Q T+  LL  C +  + +
Sbjct: 437  SLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDN 496

Query: 98   DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALT 157
                +H+HL      ++  + T+L+++YS    ++ A+ +F++   R  Y WN++     
Sbjct: 497  QGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQ 556

Query: 158  LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
              G  +E L L+++M   G  I+ D F+ + +L +CV+     S  + G+E+H  ++R+ 
Sbjct: 557  QNGETQEALRLFKQMQLNG--IKPDCFSLSSMLSSCVS----LSDSQKGRELHNFIVRNT 610

Query: 218  YN--GIVHIMTTLIDMYARFGC--------------------VMYAGFV----------- 244
                GI+ ++  L+DMYA+ G                     VM + FV           
Sbjct: 611  MEEEGILQVV--LVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNL 668

Query: 245  FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
            F QM  +N   W++++A YA  G+  E+   F EM+    D+  + +TMV+++  C++L 
Sbjct: 669  FDQMEQRNTALWNSILAGYANKGLKKESFNHFLEML--ESDIEYDVLTMVTIVNLCSSLP 726

Query: 305  ALEQGKMIHGYILRRGLDSILPVV-SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
            ALE G  +H  I+++G  +   V+ +ALV MY++CG +   + VFD+M+ +++VSWN++I
Sbjct: 727  ALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMI 786

Query: 364  SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
            S Y  HG   +A+ +++EM   G+ P+ ++F+++L ACSH GLVEEG  +F SM++++ I
Sbjct: 787  SGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNI 846

Query: 424  RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
                EHY CMVDLLGRA +LE+A + +E + IEP    WG+LLG+CR+H ++++   A++
Sbjct: 847  EAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQ 906

Query: 484  RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
            RLFEL+P N G YV+++++YAAA  W EV+ ++++++ +G++K PG S IE+  ++  F 
Sbjct: 907  RLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFH 966

Query: 544  SVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY---DLDAEEKERIVLGHSEKLAV 600
            +  + HP+ E+++  L +L+ + K  GY+P T  +L    D+  EE+E  +L HSE+LA+
Sbjct: 967  AGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLAL 1026

Query: 601  AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
            + GLI+  K  TIR+ KNLR+C DCH+ TKFISK   + I+ RD NRFHHF NG CSCGD
Sbjct: 1027 SLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGD 1086

Query: 661  YW 662
            YW
Sbjct: 1087 YW 1088



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 193/381 (50%), Gaps = 8/381 (2%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           +L I   P   T+   L  C    S      VHS L   GF  D F+   LI++Y+  D 
Sbjct: 267 MLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDD 326

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
            +    VFD+   R    WN++  A    G   + L L+ RM    +G +S+RF    +L
Sbjct: 327 EESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ--ESGYKSNRFNLGSIL 384

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
            A    S G + +  G+E+H  ++R+  N  + + + L+DMY++ G V  A  VF  +  
Sbjct: 385 MA----SAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLE 440

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           +N VS++A++A Y + G A EALEL+ +M  E   + P+  T  ++L  CA      QG+
Sbjct: 441 RNEVSYNALLAGYVQEGKAEEALELYHDMQSED-GIQPDQFTFTTLLTLCANQRNDNQGR 499

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            IH +++R  +   + V + LV MY+ CG+L   + +F+ M +R+  SWNS+I  Y  +G
Sbjct: 500 QIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNG 559

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
              +A+++FK+M  +G+ P   S  S+L +C      ++G+ L   + +  M    +   
Sbjct: 560 ETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ- 618

Query: 431 ACMVDLLGRANKLEEAAKIIE 451
             +VD+  +   ++ A K+ +
Sbjct: 619 VVLVDMYAKCGSMDYAWKVYD 639



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 199/392 (50%), Gaps = 23/392 (5%)

Query: 76  PNPTQ-HT----------YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           P PT  HT          Y  L+  C   NS     ++H+ +  NG++ D +L+TK++ +
Sbjct: 56  PKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILML 115

Query: 125 YSHFDSVDD---ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
           Y+    +DD   AR +F++   R +  WN +  A        EVL LY RM G+G    S
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGN--FS 173

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
           D+FT+  V+KAC+A       +   +++ +SV++ G N  + +   L+D YARFG +  A
Sbjct: 174 DKFTFPSVIKACIA----MEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDA 229

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
                ++   +VV+W+A+IA Y +     EA  +F  M+     +CP++ T  S L+ C 
Sbjct: 230 VTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRML--KIGVCPDNFTFASALRVCG 287

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
           AL + + GK +H  ++  G      V +AL+ MYA+C   E    VFD M +R+ V+WNS
Sbjct: 288 ALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNS 347

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +IS+    G+   A+ +F  M   G   +  +  S+L A +    + +G+ L   + + +
Sbjct: 348 IISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVR-N 406

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           ++   +   + +VD+  +   +EEA ++   L
Sbjct: 407 LLNSDIILGSALVDMYSKCGMVEEAHQVFRSL 438



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 198/411 (48%), Gaps = 19/411 (4%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
           + T+  ++ +C     +     + S +   G + + F+   L++ Y+ F  +DDA    D
Sbjct: 175 KFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLD 234

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           +    ++  WNA+          EE   ++ RM     G+  D FT+   L+ C A    
Sbjct: 235 EIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRM--LKIGVCPDNFTFASALRVCGA---- 288

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
                 GK++H+ ++  G+ G   +   LIDMYA+         VF +M  +N V+W+++
Sbjct: 289 LRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSI 348

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I+  A+ G   +AL LF  + M+      N   + S+L A A LA + +G+ +HG+++R 
Sbjct: 349 ISAEAQFGHFNDALVLF--LRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRN 406

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
            L+S + + SALV MY++CG +E    VF  + +R+ VS+N+L++ Y   G   +A++++
Sbjct: 407 LLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELY 466

Query: 380 KEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC----MV 434
            +M    G+ P   +F ++L  C++     +G+ +       H+IR ++         +V
Sbjct: 467 HDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQI-----HAHLIRANITKNIIVETELV 521

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
            +     +L  A +I   +  E     W S++   + +   + A R  K++
Sbjct: 522 HMYSECGRLNYAKEIFNRM-AERNAYSWNSMIEGYQQNGETQEALRLFKQM 571


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/655 (36%), Positives = 376/655 (57%), Gaps = 43/655 (6%)

Query: 43  TPTSLSSRNKN--ELIQSLCKQGNLRQALDVL-SIEPNPTQHTYELLLLSCTHHNSLSDA 99
            P  L S +    E +  LC+Q  +++A+++L   +  P+   Y  L+ +C  H +L   
Sbjct: 47  NPKDLVSEDNKFEEAVDVLCQQKRVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELG 106

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
             VH+H   + F    F+  +L+++Y+   S+ DA+ +FD+   R +  WN +       
Sbjct: 107 RRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKL 166

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV--------------------ASSCG 199
           GR E+  +L+  M       + D F++   +   V                    +SS  
Sbjct: 167 GRLEQARKLFDEMP------QRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNK 220

Query: 200 FSL------------LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
           F+L            L+ GKEIH  ++R   N    + + L+D+Y + G +  A  +F Q
Sbjct: 221 FTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQ 280

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M  ++VVSW+ MI     +G   E   LFR+++     + PN  T   VL ACA  AA  
Sbjct: 281 MKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSG--VRPNEYTFAGVLNACADHAAEH 338

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            GK +HGY++  G D     +SALV MY++CG   + + VF+ M + D+VSW SLI  Y 
Sbjct: 339 LGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYA 398

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
            +G   +A+  F+ ++  G  P  +++V VL AC+HAGLV++G   F S++++H +  + 
Sbjct: 399 QNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTA 458

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           +HYAC++DLL R+ + +EA  II+++ ++P   +W SLLG CRIH N+ELA+RA+K L+E
Sbjct: 459 DHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYE 518

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           +EP N   Y+ LA++YA A +W EV  V++ ++  G+ K PG+S IE+KR+++ F+  D 
Sbjct: 519 IEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDT 578

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
            HP+   +H  L  LS ++KE+GYVP T  VL+D++ E+KE+ ++ HSEKLAV FG+I+T
Sbjct: 579 SHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIIST 638

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             G  I++ KNLR C DCH+  K+ISK   ++I VRD NRFH F +G CSC DYW
Sbjct: 639 PPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/609 (40%), Positives = 363/609 (59%), Gaps = 27/609 (4%)

Query: 67  QALDVLSIEPN-------PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
           Q L  LS+ P        P   T+   L SC   +        H  +T  G   +PF+ T
Sbjct: 20  QFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQT 79

Query: 120 KLINVYSHFDSVDDARHVFDKT--RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177
            LI++Y     VD+AR VF++    R+    +NAL        +  + + L+R+MN  G 
Sbjct: 80  GLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGV 139

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
            + S   T   ++ ACV+       L+ G  +H S L++G++  V ++   I MY + G 
Sbjct: 140 PVNS--VTLLGLIPACVSPIN----LELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGS 193

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           V YA  +F +M VK ++SW+AM++ YA+NG+A   LEL+R M M  + + P+ VT+V VL
Sbjct: 194 VNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDM--NGVHPDPVTLVGVL 251

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            +CA L A   G  +   +   G  S   + +AL+ MYARCG L   Q VFD M +R +V
Sbjct: 252 SSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLV 311

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           SW ++I  YG+HG+G  A+Q+FKEMI  G+ P   +FV VL ACSHAGL ++G   F+ M
Sbjct: 312 SWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMM 371

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
           ++ + + P  EHY+CMVDLLGRA +L+EA  +IE + I+P   VWG+LLG+C+IH NVEL
Sbjct: 372 KRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVEL 431

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
           AE A +R+ ELEP N G YVLL+++Y+ A+    V R++ +++ + L+K PG S +E+K 
Sbjct: 432 AELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKG 491

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI----VLG 593
           +++ F+  D  H Q ++++ +L  L A + ++   P+        + EE  +     V  
Sbjct: 492 RVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKD------NREESNKDGFTRVGV 545

Query: 594 HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
           HSEKLAVAFGL+NT+ G  + I KNLR+CEDCH F K +SK  ++++ VRD  RFHHFRN
Sbjct: 546 HSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRN 605

Query: 654 GVCSCGDYW 662
           G CSC DYW
Sbjct: 606 GSCSCKDYW 614


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/616 (38%), Positives = 368/616 (59%), Gaps = 18/616 (2%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+  L   G+  +AL    D  S     TQ TY  ++  C +   L  A  +HS +  
Sbjct: 275 NTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLK 334

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFD-KTRRRTIYVWNALFRALTLAGRGEEVLE 167
            GF     ++T L++ YS    + +A  +F   +  + +  W A+       G       
Sbjct: 335 RGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAA 394

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+ RM   G  +  + FTY+ +L A VAS           +IHA V++  Y     + T 
Sbjct: 395 LFSRMREDG--VAPNDFTYSTILTASVASL--------PPQIHAQVIKTNYECTSIVGTA 444

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+  Y++      A  +F  +  K+VVSWSAM+ CYA+ G +  A  +F +M M  H L 
Sbjct: 445 LLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTM--HGLK 502

Query: 288 PNSVTMVSVLQACAA-LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
           PN  T+ SV+ ACA+  A ++ G+  H   ++      L V SALV+MYAR G +E  QC
Sbjct: 503 PNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQC 562

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +F+    RD+VSWNS++S Y  HGY  KA+ +F++M   G+    ++F+SV+  C+HAGL
Sbjct: 563 IFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGL 622

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           VEEG+  F+SM +++ I P++EHYACMVDL  RA KL+EA  +IE +    GP VW +LL
Sbjct: 623 VEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLL 682

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+C++H NVEL + A+++L  LEP ++  YVLL+++Y+AA  W E   V++L++ + ++K
Sbjct: 683 GACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKK 742

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S I++K K++SF++ D+ HP  EQ++A L  ++ ++K++GY P T   L+++  E+
Sbjct: 743 EAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQ 802

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE ++  HSE+LA+AFGLI T  G  + I KNLR+C DCH+  K +SK  ++EI++RD +
Sbjct: 803 KEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCS 862

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF +GVCSCGD+W
Sbjct: 863 RFHHFNSGVCSCGDFW 878



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 178/376 (47%), Gaps = 15/376 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+  +L        +     VH+     G     F+   L+N+Y+    V++AR V
Sbjct: 203 PNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVV 262

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F     R +  WN L   L L G   E L+L+     + T +     TY  V+K C    
Sbjct: 263 FCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQS--TYATVIKLCA--- 317

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA-VKNVVSW 256
                L   +++H+SVL+ G++   ++MT L+D Y++ G +  A  +F  M+  +NVVSW
Sbjct: 318 -NIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSW 376

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AMI    +NG    A  LF    M    + PN  T  ++L   A++A+L     IH  +
Sbjct: 377 TAMINGCIQNGDVPLAAALFSR--MREDGVAPNDFTYSTILT--ASVASLP--PQIHAQV 430

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++   +    V +AL+  Y++    E    +F  +D++DVVSW+++++ Y   G    A 
Sbjct: 431 IKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGAT 490

Query: 377 QIFKEMIYHGVSPSPISFVSVLGAC-SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
            IF +M  HG+ P+  +  SV+ AC S    V+ G+  F ++  +H    ++   + +V 
Sbjct: 491 NIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQ-FHAISIKHRCHDALCVSSALVS 549

Query: 436 LLGRANKLEEAAKIIE 451
           +  R   +E A  I E
Sbjct: 550 MYARKGSIESAQCIFE 565



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 151/289 (52%), Gaps = 21/289 (7%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           T L+++Y  + SV D R VF+   +R +  W +L       G   +V+EL+ RM     G
Sbjct: 143 TSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMR--AEG 200

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           +  +  T+  VL + VAS     ++  G+ +HA  ++ G    V +  +L++MYA+ G V
Sbjct: 201 VWPNSVTFASVL-SVVASQ---GMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLV 256

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV---- 294
             A  VF  M  +++VSW+ ++A    NG   EAL+LF       HD   +S+TM+    
Sbjct: 257 EEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLF-------HD-SRSSITMLTQST 308

Query: 295 --SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
             +V++ CA +  L   + +H  +L+RG  S   V++AL+  Y++ G+L     +F  M 
Sbjct: 309 YATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMS 368

Query: 353 -KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
             ++VVSW ++I+    +G    A  +F  M   GV+P+  ++ ++L A
Sbjct: 369 GSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 148/283 (52%), Gaps = 4/283 (1%)

Query: 206 GKEIHASVLRHGYN-GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           GK++H   +R G++ G V + T+L+DMY ++  V+    VF  M  +NVV+W++++  Y 
Sbjct: 122 GKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYI 181

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           ++G   + +ELF  M  E   + PNSVT  SVL   A+   ++ G+ +H   ++ G  S 
Sbjct: 182 QDGALSDVMELFFRMRAEG--VWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCST 239

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + V ++L+ MYA+CG +E  + VF  M+ RD+VSWN+L++   ++G+  +A+Q+F +   
Sbjct: 240 VFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRS 299

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
                +  ++ +V+  C++   +   + L  S+ K           A M D   +A +L 
Sbjct: 300 SITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALM-DAYSKAGQLG 358

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
            A  I   +        W +++  C  + +V LA     R+ E
Sbjct: 359 NALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMRE 401



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 2/150 (1%)

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           +AR G   +AL+ F + +   H        +V VL+ C ++     GK +HG  +R G D
Sbjct: 77  HARRGSVHQALDHFLD-VHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHD 135

Query: 323 -SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
              + V ++LV MY +   +  G+ VF+ M KR+VV+W SL++ Y   G     +++F  
Sbjct: 136 RGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFR 195

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           M   GV P+ ++F SVL   +  G+V+ G+
Sbjct: 196 MRAEGVWPNSVTFASVLSVVASQGMVDLGR 225


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/653 (37%), Positives = 373/653 (57%), Gaps = 41/653 (6%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDAL 100
           ST P+S S         +LC +G+L+QA D  S         +  LL SC   NSLS   
Sbjct: 15  STNPSSGSELTAE--FTNLCSKGHLKQAFDRFSSHIWSEPSLFSHLLQSCISENSLSLGK 72

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYS-----------------------------HFDSV 131
            +HS +  +G   D F+   L+N+YS                             +F S 
Sbjct: 73  QLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSG 132

Query: 132 D--DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           D   AR +FD+   R +  WNA+   L      EE L L+ RMN    G   D F    V
Sbjct: 133 DWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMN--ELGFLPDEFALGSV 190

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           L+ C     G   L  G+++H  V + G+   + ++++L  MY + G +     +   M 
Sbjct: 191 LRGCA----GLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMP 246

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            +NVV+W+ +IA  A+NG   E L+ +  M M      P+ +T VSV+ +C+ LA L QG
Sbjct: 247 SQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFR--PDKITFVSVISSCSELATLGQG 304

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           + IH  +++ G   I+ V+S+L++MY+RCG LE    VF   +  DVV W+S+I++YG H
Sbjct: 305 QQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFH 364

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G G +AI +F +M    +  + ++F+S+L ACSH GL E+G   F+ M +++ ++P +EH
Sbjct: 365 GRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEH 424

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
           Y CMVDLLGR   +EEA  +I  + ++     W +LL +C+IH   E+A R S+ +F L+
Sbjct: 425 YTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLD 484

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFH 549
           P +   YVLL++++A+   WD+V  V++ +  R L+K PG S +EVK +++ F   D+ H
Sbjct: 485 PRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSH 544

Query: 550 PQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSK 609
           P+  ++ + L  L++EMK++GYVP    VL+D+D E+KE  ++ HSEKLA+AF L+ T  
Sbjct: 545 PKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPV 604

Query: 610 GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           G  IR+ KNLR+C DCH   K+IS+ +N+EI+VRD +RFHHF+NG CSCGDYW
Sbjct: 605 GTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 260/667 (38%), Positives = 369/667 (55%), Gaps = 75/667 (11%)

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
           +L   L  +S  P+P  H       SC    +L  A  +H+    +G  +DPF+ + L++
Sbjct: 6   SLHHFLRHVSFPPDP--HLLPTAFKSCP---TLPLARALHAVAEVSGLARDPFVASSLLH 60

Query: 124 VYSHFDSVDDARHVFDKTRR--RTIYVWNALFRALTLAGRGEEVLELYRRM--------- 172
            Y    +  +AR +FD   R  RT+  W+AL  A    G  E    L   M         
Sbjct: 61  AYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPN 120

Query: 173 ----NGTGTGI-RSDRFTYTYVLKA----------------CVASSCG-FSLLKHGKEIH 210
               NG  +G+ RS R     V  A                C  S+ G   L+  G+++H
Sbjct: 121 VITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLH 180

Query: 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF---SQMAVK---------------- 251
              ++ G      ++T LIDMY + G       VF   S M V                 
Sbjct: 181 GYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVC 240

Query: 252 ----------------NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
                           NVVSW++++AC  +NG   EA+E FREM  +  +  PNSVT+  
Sbjct: 241 EALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTE--PNSVTIPC 298

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           VL A A +AAL  G+  H + LR+G    + V SALV MYA+CG+++  + +FD M  R+
Sbjct: 299 VLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRN 358

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           VVSWN++I  Y ++G    A+ +F  M+     P  ++F  +L AC+ AGL EEG+  F+
Sbjct: 359 VVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFK 418

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
            M  E+ + P +EHYACMV LLGRA KL+EA  +I D+  EP   +WGSLLGSCR+H NV
Sbjct: 419 EMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNV 478

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           +LAE A+++LF LEP NAGNYVLL+++YA+  MWD V RV+ +++  GL+K  G S IE+
Sbjct: 479 DLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEI 538

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
           K K++  ++ D+ HP    +   +  L+ +M++ G+VP T  VL+D++ +EK+ I+  HS
Sbjct: 539 KNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHS 598

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EKLAVA GLI+TS G T+R+ KNLR+C DCH   KFIS F  +EI VRD NRFHHF  G 
Sbjct: 599 EKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGK 658

Query: 656 CSCGDYW 662
           CSCGD+W
Sbjct: 659 CSCGDFW 665



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 155/376 (41%), Gaps = 53/376 (14%)

Query: 53  NELIQSLCKQGNLRQALDVLS-------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSH 105
           N L+  L + G  R A+  L+       + P+ T  +  L  +      S+   L  H +
Sbjct: 125 NGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQL--HGY 182

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
               G   D  +VT LI++Y       +   VFD++    +   NAL   L+   +  E 
Sbjct: 183 AVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEA 242

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASS---------------------------- 197
           L L++       G+  +  ++T ++  CV +                             
Sbjct: 243 LRLFKEF--VDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVL 300

Query: 198 ---CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
                 + L HG+  H   LR G+   V++ + L+DMYA+ G V  A  +F  M  +NVV
Sbjct: 301 PAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVV 360

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG----K 310
           SW+AMI  YA  G A  A+ +F  M+       P+ VT   +L AC      E+G    K
Sbjct: 361 SWNAMIGGYAMYGEAVNAVWMFHSMLKCKQK--PDMVTFTCLLAACTQAGLTEEGRHYFK 418

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
            +H      G+   +   + +VT+  R GKL+    +   M  + D   W SL+ S  VH
Sbjct: 419 EMHN---EYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVH 475

Query: 370 GYGGKAIQIFKEMIYH 385
           G    A ++  E ++H
Sbjct: 476 GNVDLA-EVAAEKLFH 490


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 362/618 (58%), Gaps = 41/618 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL SC    +  + L +H H+   G++ D ++ T LI++Y   + ++DA  V
Sbjct: 61  PNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKV 120

Query: 138 FDKTRRRTI--------------YV-----------------WNALFRALTLAGRGEEVL 166
           FD++  R +              Y+                 WNA+       G  +E L
Sbjct: 121 FDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEAL 180

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++ M    T +R D  T   V+ A   S      ++ G+++H+ +  HG+   + I+ 
Sbjct: 181 ELFKEM--MKTNVRPDESTMVTVISASARSGS----IELGRQVHSWIADHGFGSNLKIVN 234

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LID Y++ G +  A  +F  ++ K+V+SW+ +I  Y    +  EAL LF+EM+      
Sbjct: 235 ALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGES- 293

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELG 344
            PN VTM+S+L ACA L A++ G+ IH YI +R  G+ +   + ++L+ MY++CG +E  
Sbjct: 294 -PNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAA 352

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
             VF+ M  + + +WN++I  + +HG    A  IF  M  + + P  I+FV +L ACSHA
Sbjct: 353 HQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHA 412

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+++ G+ +F SM   + I P +EHY CM+DLLG +   +EA ++I  + +EP   +W S
Sbjct: 413 GMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCS 472

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +C++H NVEL E+ ++ LF++EP N G+YVLL+++YA A  W+EV R++ LL  +G+
Sbjct: 473 LLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGM 532

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +KVPG S IE+   ++ F+  D+FHP+  +++ +L  +   ++E G+VP T  VL +++ 
Sbjct: 533 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEE 592

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           E KE  +  HSEKLA+AFGLI+T     + I KNLR+C +CH  TK ISK   +EI+ RD
Sbjct: 593 EFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 652

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHFR+GVCSC DYW
Sbjct: 653 RTRFHHFRDGVCSCNDYW 670



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 207/425 (48%), Gaps = 44/425 (10%)

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
           HF+ +  A  VF+  +   + +WN +FR   L+      L+LY  M     G+  + +T+
Sbjct: 9   HFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCM--ISLGLLPNSYTF 66

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM--------------- 231
            ++LK+C          K G +IH  VL+ GY   +++ T+LI M               
Sbjct: 67  PFLLKSCAKLKAS----KEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFD 122

Query: 232 ----------------YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
                           YA  G +  A  +F ++ VK+VVSW+AMI+ Y   G   EALEL
Sbjct: 123 RSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALEL 182

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F+EM+    ++ P+  TMV+V+ A A   ++E G+ +H +I   G  S L +V+AL+  Y
Sbjct: 183 FKEMM--KTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFY 240

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ++CG++E    +F  +  +DV+SWN LI  Y       +A+ +F+EM+  G SP+ ++ +
Sbjct: 241 SKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTML 300

Query: 396 SVLGACSHAGLVEEGKMLFESMRKE-HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           S+L AC+H G ++ G+ +   + K    +  +      ++D+  +   +E A ++   + 
Sbjct: 301 SILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSML 360

Query: 455 IEPGPKVWGSLLGSCRIH--CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
            +  P  W +++    +H   N      +  R  E++P +   +V L    + A M D  
Sbjct: 361 HKSLP-AWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDI-TFVGLLSACSHAGMLDLG 418

Query: 513 KRVKR 517
           + + R
Sbjct: 419 RHIFR 423


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/647 (36%), Positives = 373/647 (57%), Gaps = 39/647 (6%)

Query: 47  LSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           +SS    +   SLC  G ++QA D  + E       +  LL SC    SL     VHS +
Sbjct: 29  ISSSASLQEFTSLCNDGRIKQAYDTFTSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLI 88

Query: 107 TDNGFDQDPFLVTKLINVYS-------------------------------HFDSVDDAR 135
             +G  +D F+   L+N YS                                   ++ A+
Sbjct: 89  ITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQ 148

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            +FD+   R I  WNA+   LT     ++ L L++ M   G G   D FT   VL+ C  
Sbjct: 149 KLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEM--YGLGFLPDEFTLGSVLRGCA- 205

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
              G   L  G+E+HA +L+ G+     + ++L  MY + G +     +   M ++ VV+
Sbjct: 206 ---GLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVA 262

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+ +IA  A+NG   E L  +  M M      P+ +T VSVL AC+ LA L QG+ IH  
Sbjct: 263 WNTLIAGKAQNGCPEEVLNQYNMMKMAGFR--PDKITFVSVLSACSELATLGQGQQIHAE 320

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           +++ G  S+L VVS+L++MY+R G LE     F   +  DVV W+S+I++YG HG G +A
Sbjct: 321 VIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEA 380

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           +++F +M    +  + ++F+S+L ACSH+GL E+G   F+ M K++ ++P +EHY C+VD
Sbjct: 381 LELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVD 440

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495
           LLGRA +LEEA  +I  + ++P   +W +LL +C++H   E+AER S+ + +L+P +A +
Sbjct: 441 LLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAAS 500

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           YVLL++++A+A  W  V ++++ +  R ++K PG S +E+K  ++ F   D+ HPQ+ ++
Sbjct: 501 YVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEI 560

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
              L  L +E+K+ GYVP+   VL+D+D EEKE  +  HSEK A+AF L+NTS+   IR+
Sbjct: 561 DLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRV 620

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C+DCH+  K IS+  N+EI+VRD +RFHHF++G CSCG+YW
Sbjct: 621 MKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/620 (38%), Positives = 358/620 (57%), Gaps = 45/620 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH---------- 127
           P  HT+  L  SCT   +  +   +H+H        +P + T +I++Y+           
Sbjct: 129 PNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLV 188

Query: 128 FDS---------------------VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FD                      +DDAR +FD+   + +  WNA+      +GR EE +
Sbjct: 189 FDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAI 248

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
             +  M      +  ++ T   VL AC  +  G    + GK I + V  +G+   + +  
Sbjct: 249 VCFYEMQEAN--VLPNKSTMVVVLSACGHTRSG----ELGKWIGSWVRDNGFGSNLQLTN 302

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LIDMY + G    A  +F  +  K+V+SW+ MI  Y+   +  EAL LF   +M   ++
Sbjct: 303 ALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFE--VMLRSNV 360

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYI---LRRGLDSILPVVSALVTMYARCGKLEL 343
            PN VT + +L ACA L AL+ GK +H YI   LR   ++ L   ++L+ MYA+CG +E 
Sbjct: 361 KPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASL--WTSLIDMYAKCGCIEA 418

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV-SPSPISFVSVLGACS 402
            + VF  M  R++ SWN+++S + +HG+  +A+ +F EM+  G+  P  I+FV VL AC+
Sbjct: 419 AERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACT 478

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
            AGLV+ G   F SM +++ I P ++HY CM+DLL RA K EEA  +++++ +EP   +W
Sbjct: 479 QAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIW 538

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
           GSLL +C+ H  VE  E  ++RLF+LEP NAG +VLL+++YA A  WD+V R++  L  +
Sbjct: 539 GSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDK 598

Query: 523 GLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
           G++KVPG + IE+   ++ F+  D+FHP+   ++ +L  +   ++E G+VP T  VLYD+
Sbjct: 599 GMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDM 658

Query: 583 DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILV 642
           D E KE  +  HSEKLA++FGLI T  G TIRI KNLR+C +CHS TK ISK  N+EI+ 
Sbjct: 659 DEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 718

Query: 643 RDVNRFHHFRNGVCSCGDYW 662
           RD NRFHHF++G CSC D W
Sbjct: 719 RDRNRFHHFKDGFCSCNDCW 738



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 218/448 (48%), Gaps = 53/448 (11%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD--DARHV 137
           QH Y  LL  C + N+      +HS +   G +   F+ +KLI+  +   S D   A  +
Sbjct: 28  QHPYLNLLEKCKNINTFK---QIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSL 84

Query: 138 FDKTR---RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           F++ +   +  +++WN+L R  +L+      L L+ RM     G++ +  T+ ++ K+C 
Sbjct: 85  FEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRM--LYYGVQPNSHTFPFLFKSCT 142

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA------------- 241
            +         GK++HA  L+   +   H+ T++I MYA  G + +A             
Sbjct: 143 KAKA----THEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAV 198

Query: 242 -------GFV-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
                  G+V           F ++ VK+VVSW+AMI+ Y ++G   EA+  F E  M+ 
Sbjct: 199 SFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYE--MQE 256

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
            ++ PN  TMV VL AC    + E GK I  ++   G  S L + +AL+ MY +CG+ ++
Sbjct: 257 ANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDI 316

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
            + +FD ++++DV+SWN++I  Y       +A+ +F+ M+   V P+ ++F+ +L AC+ 
Sbjct: 317 ARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACAC 376

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
            G ++ GK +   + K      +   +  ++D+  +   +E A ++   +        W 
Sbjct: 377 LGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMH-SRNLASWN 435

Query: 464 SLLGSCRIHCNVE-----LAERASKRLF 486
           ++L    +H + E      +E  +K LF
Sbjct: 436 AMLSGFAMHGHAERALALFSEMVNKGLF 463


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/594 (38%), Positives = 358/594 (60%), Gaps = 15/594 (2%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           +L +   P   T+  ++ +C+        + +H  +   G+    F+   LI +Y   D 
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
            + +R VFD+   +    W+A+  A     R +E   L+R+M   G+  R  R      +
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGS--RPSRGAILNAM 118

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
            ACV S       +   +++  V+ +G +    + +    M+AR G V  A  +F  +  
Sbjct: 119 -ACVRSH------EEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMS 171

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           K++V+W+  I  Y +  M  EAL L ++M+++   + P+++T++ V++AC+ LA+ +   
Sbjct: 172 KDLVTWATTIEAYVKADMPLEALGLLKQMMLQG--IFPDAITLLGVIRACSTLASFQLAH 229

Query: 311 MIHGYILRRGL--DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           ++HG I+  G   + +L V +AL+ +Y +CG L   + VFD M +R++++W+++IS YG+
Sbjct: 230 IVHG-IITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGM 288

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           HG+G +A+ +F +M    V P  I+FVS+L ACSH+GLV EG   F SM ++  + P  E
Sbjct: 289 HGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPE 347

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
           HYACMVD+LGRA KL+EA   IE + + P   VWG+LLG+CRIH NV+LAE  ++ LF+L
Sbjct: 348 HYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDL 407

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
           +P NAG YV+L ++Y       E   ++ L++ RG++K+ G S IE+K K+Y+FV+ D  
Sbjct: 408 DPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRS 467

Query: 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
           HPQ + +++ L  L   ++++GY P    VL+D+D E KE ++  HSEKLA+ FGL+N  
Sbjct: 468 HPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLG 527

Query: 609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            G  IRI KNLR+C DCH+ TKFISK   +EI+VRD +RFHHF+NG CSC DYW
Sbjct: 528 PGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/630 (38%), Positives = 383/630 (60%), Gaps = 19/630 (3%)

Query: 36  VSLNSSTTPTSLS-SRNKNEL-IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHH 93
           V   +S+ P   + + NK +L  Q L  Q  + +  D  S  P      +E LL S    
Sbjct: 50  VKTTTSSAPLDRNPTMNKIKLQTQQLAFQHPVTRNFDTQSHSP-----VHEALLRSGPR- 103

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
             L +   VH+H+  +G  +   L+TKLI++     S+  AR +F        +++++L 
Sbjct: 104 --LRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLL 161

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           +  +  G   + +  YRRM    +G     +T+T V+KAC       S L+ GKEIH+ V
Sbjct: 162 KVTSKFGFSIDTVLFYRRM--LFSGAPQSNYTFTSVIKACA----DLSALRLGKEIHSHV 215

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           +  GY   +++   LI +YA+   +  A  VF  M  + +++W+++I+ Y +NG+  E++
Sbjct: 216 MVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESI 275

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
            LF  ++MES    P+S T+VS+L +C+ L AL+ G  +H Y    G D  + + ++L+ 
Sbjct: 276 GLF-HLMMES-GFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLIN 333

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MY RCG +   + VFD M +R+VV+W ++IS YG+HGYG +A+++F EM  +G  P+ I+
Sbjct: 334 MYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNIT 393

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED- 452
           FV+VL AC+H+GL+++G+ +F SM++ + + P VEH  CMVD+ GRA  L +A + I+  
Sbjct: 394 FVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKF 453

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
           +  EPGP VW S+LG+CR+H N +L  + ++ +  +EP N G+YV+L+++YA A   D V
Sbjct: 454 IPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRV 513

Query: 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV 572
           + V+ ++  R L+K  G S IE+ RK Y F   D+ HPQ   ++  L  L     E GYV
Sbjct: 514 EMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYV 573

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
           P  + +++DL+ EE++  +  HSEKLA+AFGL+ T++GETIRI KNLR+CEDCHS  K I
Sbjct: 574 PAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHI 633

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           S  A++EI+VRD  RFHHF++G CSC DYW
Sbjct: 634 SIIADREIIVRDKFRFHHFKDGSCSCLDYW 663


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/588 (40%), Positives = 355/588 (60%), Gaps = 10/588 (1%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           NP +    + L +CT    ++   ++   +   G +++  + T L+++Y       DA  
Sbjct: 58  NPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAAS 117

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF +   R +  W+A+  A    G   E L L+R+M+  G  +  ++ T    L AC + 
Sbjct: 118 VFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDG--VAPNKVTLVSGLDACAS- 174

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+ G  +H  V   G    V + T L+++Y + G +  A   F Q+  KNVV+W
Sbjct: 175 ---LGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAW 231

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH--G 314
           SA+ A YARN    +A+ +   M +E   L PNS T VSVL ACAA+AAL+QG+ IH   
Sbjct: 232 SAISAAYARNDRNRDAIRVLHRMDLEG--LVPNSTTFVSVLDACAAIAALKQGRRIHERT 289

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            +L  GL+S + V++ALV MY++CG L L   +FD +   D+V WNSLI++   HG   K
Sbjct: 290 QVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEK 349

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A+++F+ M   G+ P+ I+F SVL ACSHAG++++G+  F S   +H I P  EH+ CMV
Sbjct: 350 ALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMV 409

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           DLLGRA  + ++  ++  +  EP P  W + LG+CR + N++ A  A++ LF+L+P    
Sbjct: 410 DLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRA 469

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
            YVLL+++YA A  W +V R+++ ++     K  GRS IEVK +++ F+S D  HP+  +
Sbjct: 470 PYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGE 529

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
           +HA L  L+  MKE GYVP T++VL+D+  E KE +V  HSEKLA+AF L+ T +G  IR
Sbjct: 530 IHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIR 589

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + KNLR+C DCH+ +KFISK  N+EI+VRD NRFH F+NG CSCGDYW
Sbjct: 590 VVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 186/376 (49%), Gaps = 16/376 (4%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           +++ YS   ++   R  FD+     I  WNAL  A       +     +R M     GI 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGM--LLQGIN 58

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
                 +  L AC  +      +  G+ I  ++L  G      + T L+ MY + G    
Sbjct: 59  PGEVGISIFLSACTDA----REITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTD 114

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF +M+ ++VV+WSAM+A YARNG   EAL LFR+M ++   + PN VT+VS L AC
Sbjct: 115 AASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDG--VAPNKVTLVSGLDAC 172

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           A+L  L  G ++H  +  +G+ S + V +ALV +Y +CG++E     F  + +++VV+W+
Sbjct: 173 ASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWS 232

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK- 419
           ++ ++Y  +     AI++   M   G+ P+  +FVSVL AC+    +++G+ + E  +  
Sbjct: 233 AISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVL 292

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN----V 475
              +   V     +V++  +   L  A  + + +       +W SL+ +   H      +
Sbjct: 293 GGGLESDVYVLTALVNMYSKCGNLALAGDMFDKI-AHLDLVLWNSLIATNAQHGQTEKAL 351

Query: 476 ELAERASKRLFELEPT 491
           EL ER   RL  L+PT
Sbjct: 352 ELFER--MRLEGLQPT 365


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/588 (40%), Positives = 355/588 (60%), Gaps = 10/588 (1%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           NP +    + L +CT    ++   ++   +   G +++  + T L+++Y       DA  
Sbjct: 73  NPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAAS 132

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF +   R +  W+A+  A    G   E L L+R+M+  G  +  ++ T    L AC + 
Sbjct: 133 VFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDG--VAPNKVTLVSGLDACAS- 189

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+ G  +H  V   G    V + T L+++Y + G +  A   F Q+  KNVV+W
Sbjct: 190 ---LGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAW 246

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG-- 314
           SA+ A YARN    +A+ +   M +E   L PNS T VSVL ACAA+AAL+QG+ IH   
Sbjct: 247 SAISAAYARNDRNRDAIRVLHRMDLEG--LAPNSTTFVSVLDACAAIAALKQGRRIHERI 304

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
           ++L  GL+S + V++ALV MY++CG L L   +FD +   D+V WNSLI++   HG   K
Sbjct: 305 HVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEK 364

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A+++F+ M   G+ P+ I+F SVL ACSHAG++++G+  F S   +H I P  EH+ CMV
Sbjct: 365 ALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMV 424

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           DLLGRA  + ++  ++  +  EP P  W + LG+CR + N++ A  A++ LF+L+P    
Sbjct: 425 DLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRA 484

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
            YVLL+++YA A  W +V R+++ ++     K  GRS IEVK +++ F+S D  HP+  +
Sbjct: 485 PYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGE 544

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
           +HA L  L+  MK  GYVP T++VL+D+  E KE +V  HSEKLA+AF L+ T +G  IR
Sbjct: 545 IHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIR 604

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + KNLR+C DCH+ +KFISK  N+EI+VRD NRFH F+NG CSCGDYW
Sbjct: 605 VVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 198/390 (50%), Gaps = 22/390 (5%)

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           G+ ++ FL   LI++Y+  D  DDA  VF   + + ++ W  +  A       +     +
Sbjct: 5   GWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFF 64

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           R M     GI       +  L AC  +      +  G+ I  ++L  G      + T L+
Sbjct: 65  RGM--LLQGINPGEVGISIFLSACTDA----REITIGRSIQLAILGTGIEEESIVQTALV 118

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
            +Y + G    A  VF +M+ ++VV+WSAM+A YARNG   EAL LFR+M ++   + PN
Sbjct: 119 SLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDG--VAPN 176

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
            VT+VS L ACA+L  L  G ++H  +  +G+ S + V +ALV +Y +CG++E     F 
Sbjct: 177 KVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFG 236

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
            + +++VV+W+++ ++Y  +     AI++   M   G++P+  +FVSVL AC+    +++
Sbjct: 237 QIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQ 296

Query: 410 GKMLFESMRKEHMIRPSVEH----YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           G+ + E +   H++   +E        +V++  +   L  A  + + +       +W SL
Sbjct: 297 GRRIHERI---HVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKI-AHLDLVLWNSL 352

Query: 466 LGSCRIHCN----VELAERASKRLFELEPT 491
           + +   H      +EL ER   RL  L+PT
Sbjct: 353 IATNAQHGQTEKALELFER--MRLEGLQPT 380


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 360/618 (58%), Gaps = 41/618 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL SC    +  +   +H H+   G+D D F+ T LI+VY     ++DAR V
Sbjct: 132 PNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKV 191

Query: 138 FDKTRRRTI--------------YV-----------------WNALFRALTLAGRGEEVL 166
           FD++  R +              Y+                 WNA+       G  +E L
Sbjct: 192 FDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++ M    T IR D  T   V+ AC  S      ++ G+++H+ +  HG+   + I+ 
Sbjct: 252 ELFKEM--MKTNIRPDESTMVTVVSACAQSGS----IELGRQVHSWIDDHGFGSNLKIVN 305

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +L+D+Y++ G +  A  +F  +  K+V+SW+ +I  Y    +  EAL LF+EM+      
Sbjct: 306 SLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGER- 364

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELG 344
            PN VTM+S+L ACA L A++ G+ IH YI +R     +   + ++L+ MYA+CG +E  
Sbjct: 365 -PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAA 423

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
             VF+ +  + + SWN++I  + +HG    A  IF  M   G+ P  I+FV +L ACS +
Sbjct: 424 HQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRS 483

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+++ G+ +F +M +++ I P +EHY CM+DLLG +   +EA ++I ++ +EP   +W S
Sbjct: 484 GMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCS 543

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +C+I  NVEL E  ++ L ++EP N G YVLL+++YA A  W+EV +++ LL  +G+
Sbjct: 544 LLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGM 603

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +KVPG S IE+   ++ F+  D+FHP+  +++ +L  +   +++ G+VP T  VL +++ 
Sbjct: 604 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEE 663

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           E KE  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH  TK ISK   +EI+ RD
Sbjct: 664 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 723

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHFR+GVCSC DYW
Sbjct: 724 RTRFHHFRDGVCSCNDYW 741



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 226/461 (49%), Gaps = 59/461 (12%)

Query: 102 VHSHLTDNGFDQDPFLVTKLIN---VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           +H+ +   G     + ++KL+    +  HFD +  A  VF+  +   + +WN +FR   L
Sbjct: 52  IHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 111

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +      L+LY  M     G+  + +T+ ++LK+C  S       K G++IH  VL+ GY
Sbjct: 112 SSDPVSALKLYVCM--ISLGLLPNSYTFPFLLKSCAKSKA----FKEGQQIHGHVLKLGY 165

Query: 219 NGIVHIMTTLIDMYARFG----------------CVMYAGFV---------------FSQ 247
           +  + + T+LI +Y + G                 V Y   +               F +
Sbjct: 166 DLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDE 225

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           + VK+VVSW+AMI+ YA  G   EALELF+EM+    ++ P+  TMV+V+ ACA   ++E
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKEMM--KTNIRPDESTMVTVVSACAQSGSIE 283

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+ +H +I   G  S L +V++L+ +Y++CG+LE    +F+ +  +DV+SWN+LI  Y 
Sbjct: 284 LGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYT 343

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML-------FESMRKE 420
                 +A+ +F+EM+  G  P+ ++ +S+L AC+H G ++ G+ +        +S    
Sbjct: 344 HMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNA 403

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
             +R S      ++D+  +   +E A ++   + +      W +++    +H   + A  
Sbjct: 404 SSLRTS------LIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADAAFD 456

Query: 481 ASKRL--FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
              R+    +EP +   +V L    + + M D  + + R +
Sbjct: 457 IFSRMRKIGIEPDDI-TFVGLLSACSRSGMLDLGRHIFRTM 496



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 175/404 (43%), Gaps = 51/404 (12%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + GN ++AL++    +     P + T   ++ +C    S+     VHS + D
Sbjct: 235 NAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDD 294

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GF  +  +V  L+++YS    ++ A  +F+    + +  WN L    T     +E L L
Sbjct: 295 HGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLL 354

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV---LRHGYNGIVHIM 225
           ++ M  +G   R +  T   +L AC         +  G+ IH  +   L+   N    + 
Sbjct: 355 FQEMLRSGE--RPNDVTMLSILPACAH----LGAIDIGRWIHVYIDKRLKSATNA-SSLR 407

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           T+LIDMYA+ G +  A  VF+ +  K++ SW+AMI  +A +G A  A ++F    M    
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSR--MRKIG 465

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + P+ +T V +L AC+    L+ G+    +I R            +   Y    KLE   
Sbjct: 466 IEPDDITFVGLLSACSRSGMLDLGR----HIFR-----------TMTQDYKITPKLEHYG 510

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
           C+ D +               G  G   +A ++   M    + P  + + S+L AC   G
Sbjct: 511 CMIDLL---------------GHSGLFKEAEEMINNM---EMEPDGVIWCSLLKACKIRG 552

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
            VE G+   +++ K     P    Y  + ++   A +  E AKI
Sbjct: 553 NVELGESFAQNLIKIEPENPGC--YVLLSNIYATAGRWNEVAKI 594


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/614 (36%), Positives = 357/614 (58%), Gaps = 50/614 (8%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N++I++    G    A+D+    L +   P ++TY  +L +C+   ++ D + +HSH   
Sbjct: 78  NQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKM 137

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G + D F+ T L++ Y+    + +A+ +F     R +  WNA+    +L G  ++ ++L
Sbjct: 138 FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQL 197

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
             +M   G                C  SS                             T+
Sbjct: 198 IMQMQEEGI---------------CPNSS-----------------------------TI 213

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           + +     C++YA  +F  M V+N VSWSAMI  Y  +    EAL++FR M +   D  P
Sbjct: 214 VGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGID--P 271

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +  TM+ VL AC+ LAAL+ G   HGY++ RG  +   + +AL+ MY++CGK+   + VF
Sbjct: 272 DLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVF 331

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + MD+ D+VSWN++I  YG+HG G +A+ +F +++  G+ P  I+F+ +L +CSH+GLV 
Sbjct: 332 NRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVM 391

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG++ F++M ++  I P +EH  CMVD+LGRA  ++EA   I ++  EP  ++W +LL +
Sbjct: 392 EGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSA 451

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH N+EL E  SK++  L P + GN+VLL+++Y+AA  WD+   ++   +  GL+K+P
Sbjct: 452 CRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIP 511

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S IE+   +++FV  D+ H Q  Q++  L  L  EMK  GY  +   V  D++ EEKE
Sbjct: 512 GCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKE 571

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           +I+L HSEKLA+AFG++N   G  I +TKNLR+C DCH+  KF++    +EI VRD NRF
Sbjct: 572 QILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRF 631

Query: 649 HHFRNGVCSCGDYW 662
           HHF+NG C+CGD+W
Sbjct: 632 HHFKNGTCNCGDFW 645



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 115/217 (52%), Gaps = 6/217 (2%)

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
            Y ++L+AC+ S      L   K+IH   L++  N    ++  L  +Y     V+ A  +
Sbjct: 10  NYLHLLEACIQSKS----LTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRL 65

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F ++   +V+ W+ +I  YA NG    A++L+  M+     + PN  T   VL+AC+ L 
Sbjct: 66  FDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG--VRPNKYTYPFVLKACSGLL 123

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           A+E G  IH +    GL+S + V +ALV  YA+CG L   Q +F  M  RDVV+WN++I+
Sbjct: 124 AIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIA 183

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
              ++G    A+Q+  +M   G+ P+  + V VL  C
Sbjct: 184 GCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC 220



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 2/177 (1%)

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           +L+AC    +L + K IH + L+   ++   V+  L  +Y  C ++ L + +FD +    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           V+ WN +I +Y  +G    AI ++  M++ GV P+  ++  VL ACS    +E+G +   
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG-VEIH 132

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           S  K   +   V     +VD   +   L EA ++   +        W +++  C ++
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLY 188


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/616 (37%), Positives = 373/616 (60%), Gaps = 15/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+   +  + + AL + S       +P   T+  LL +C   + L     VH+ +  
Sbjct: 88  NAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFR 147

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWNALFRALTLAGRGEEVL 166
            GF+ D F+   LI +Y+    +  AR VF+      RTI  W A+  A    G   E L
Sbjct: 148 LGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEAL 207

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           E++ +M      ++ D      VL A          L+ G+ IHASV++ G      ++ 
Sbjct: 208 EIFSQMRKMD--VKPDCVALVSVLNAFTC----LQDLEQGRSIHASVMKMGLETEPDLLI 261

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +L  MYA+ G V  A  +F +M   N++ W+AMI+ YA+NG A +A++LF EMI  + D+
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMI--NKDV 319

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+++++ S + ACA + +LEQ + +  Y+ R      + + SAL+ M+A+CG +E  + 
Sbjct: 320 RPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARS 379

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VFD    RDVV W+++I  YG+HG   +AI +++ M   GV P+ ++F+ +L AC+H+G+
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGM 439

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V EG   F  M  +H I P  +HYAC++DLLGRA  L++A ++I+ + ++PG  VWG+LL
Sbjct: 440 VREGWWFFNRM-ADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +C+ H +VEL + A+++LF ++P+N G+YV L+++YAAA +WD V  V+  ++ +GL K
Sbjct: 499 SACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNK 558

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S +EV+ ++  F   D+ HP++E++   +  + + +KE G+V      L+DL+ EE
Sbjct: 559 DVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEE 618

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
            E  +  HSE++ +A+GLI+T +G T+RITKNLR C +CH+ TK ISK   +EI+VRD N
Sbjct: 619 AEETLCSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTN 678

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF++GVCSCGDYW
Sbjct: 679 RFHHFKDGVCSCGDYW 694



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 211/395 (53%), Gaps = 21/395 (5%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  L+ S TH   L     +H+ L   G     FL+TKLI+  S +  +  AR VFD   
Sbjct: 24  YASLIDSSTHKAQLR---QIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLP 80

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           R  ++ WNA+ R  +     ++ L +Y +M      +  D FT+ ++LKAC     G S 
Sbjct: 81  RPQVFPWNAIIRGYSRNNHFQDALLMYSKMQ--LARVSPDSFTFPHLLKAC----GGLSH 134

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYA---RFGCVMYAGFVFSQMAV--KNVVSWS 257
           L+ G+ +HA V R G+   V +   LI +YA   R GC   A  VF  + +  + +VSW+
Sbjct: 135 LQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGC---ARTVFEGLPLPERTIVSWT 191

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           A+++ YA+NG   EALE+F +  M   D+ P+ V +VSVL A   L  LEQG+ IH  ++
Sbjct: 192 AIVSAYAQNGEPVEALEIFSQ--MRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVM 249

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + GL++   ++ +L TMYA+CG++   + +FD M   +++ WN++IS Y  +G+   AI 
Sbjct: 250 KMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAID 309

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F EMI   V P  IS  S + AC+  G +E+ + + E + +    R  V   + ++D+ 
Sbjct: 310 LFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDY-RDDVFISSALIDMF 368

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            +   + E A+ + D  ++    VW +++    +H
Sbjct: 369 AKCGSV-ECARSVFDRTLDRDVVVWSAMIVGYGLH 402


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/622 (37%), Positives = 365/622 (58%), Gaps = 45/622 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +++  LL SC    +  +   +H+ +   G   D ++ T LI++Y+    ++DAR V
Sbjct: 62  PNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKV 121

Query: 138 FDKTR-------------------------------RRTIYVWNALFRALTLAGRGEEVL 166
           FD +                                 R +  WNA+       GR EE L
Sbjct: 122 FDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEAL 181

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR----HGYNGIV 222
           EL++ M    T +R D  T   V+ AC  S      ++ G+++H+ V      HG++  +
Sbjct: 182 ELFKEM--MRTNVRPDEGTLVSVVSACAQSGS----IELGRQVHSWVDDDDDDHGFSSSL 235

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
            I+  LID+Y++ G V  A  +F  ++ K+VVSW+ +I  Y    +  EAL LF+EM+  
Sbjct: 236 KIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRS 295

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGK 340
               CPN VT++SVL ACA L A++ G+ IH YI ++  G+ +   + ++L+ MYA+CG 
Sbjct: 296 GE--CPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGD 353

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +E    VF+ M  R + SWN++I  + +HG    A  +F  M  + V P  I+FV +L A
Sbjct: 354 IEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSA 413

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
           CSH+GL++ G+ +F+SM +++ + P +EHY CM+DLLG +   +EA ++I  + +EP   
Sbjct: 414 CSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGV 473

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
           +W SLL +C+ H N+ELAE  +++L ++EP N+G+YVLL+++YA A  W++V RV+ +L 
Sbjct: 474 IWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLN 533

Query: 521 ARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY 580
            +G++KVPG S IEV   ++ F+  D+ HP+  +++ +L  +  +++E G+ P T  VL 
Sbjct: 534 GKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQ 593

Query: 581 DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEI 640
           +++ E KE  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH  TK ISK   +EI
Sbjct: 594 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 653

Query: 641 LVRDVNRFHHFRNGVCSCGDYW 662
           + RD  RFHHFR+GVCSC DYW
Sbjct: 654 VARDRTRFHHFRDGVCSCCDYW 675



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 188/376 (50%), Gaps = 56/376 (14%)

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
           +L  V  HFD +  A  VF+  +   + +WN + R    +      LE+Y RM     G 
Sbjct: 3   ELCVVSPHFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRM--VSLGH 60

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG--- 236
             + +++ ++LK+C  S       + G++IHA VL+ G     ++ T+LI MYAR G   
Sbjct: 61  LPNSYSFPFLLKSCAKSKA----FEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLE 116

Query: 237 -----------------CVMYAGF-----------VFSQMAVKNVVSWSAMIACYARNGM 268
                              +  G+           VF ++  ++VVSW+AMI  Y  NG 
Sbjct: 117 DARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGR 176

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI----LRRGLDSI 324
             EALELF+EM+    ++ P+  T+VSV+ ACA   ++E G+ +H ++       G  S 
Sbjct: 177 YEEALELFKEMMRT--NVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSS 234

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           L +V+AL+ +Y++CG +E    +F+ +  +DVVSWN+LI  Y       +A+ +F+EM+ 
Sbjct: 235 LKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLR 294

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKML-------FESMRKEHMIRPSVEHYACMVDLL 437
            G  P+ ++ +SVL AC+H G ++ G+ +        + +  E  +R S      ++D+ 
Sbjct: 295 SGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTS------LIDMY 348

Query: 438 GRANKLEEAAKIIEDL 453
            +   +E A ++   +
Sbjct: 349 AKCGDIEAAHQVFNSM 364


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/656 (37%), Positives = 378/656 (57%), Gaps = 58/656 (8%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I+   +  N R+A+ +        I P P   T+  LL SC   +SL     VHSH+
Sbjct: 79  NTMIRGYSRSDNPREAIVLYMSMIAKGIAP-PNNFTFPFLLNSCARLSSLEPGHEVHSHI 137

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             +GF+ D F+   LI++YS F +++ AR +FD++  R +  +N + +      + E  L
Sbjct: 138 IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 197

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH---GKEIHASVLRH--GYNGI 221
            L+  M  +G  I  D FT+  +   C       S+L     GK+IHA V ++    +  
Sbjct: 198 CLFGEMQNSG--ILPDEFTFVALFSVC-------SVLNEPNVGKQIHAQVYKNLRSIDSN 248

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAV------------------------------- 250
           + + + ++DMYA+ G +  A  VFS M                                 
Sbjct: 249 ILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMH 308

Query: 251 -KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            ++V+SW+AMI+ Y++ G   EALELF+EM  E+  + P+ VT+V+VL ACA L A + G
Sbjct: 309 ERDVISWTAMISGYSQAGQCSEALELFKEM--EALGIKPDEVTLVAVLSACARLGAFDLG 366

Query: 310 K-MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSY 366
           K + H YI     +    + +A++ MYA+CG ++    +F  + K  +    +NS+I+  
Sbjct: 367 KRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGL 426

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
             HG G  AI +F+E+I  G+ P  ++FV VL AC H+GL+EEGK LFESM   + I+P 
Sbjct: 427 AQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQ 486

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF 486
           +EHY CMVDLLGR   LEEA  +++ +  E    +W +LL +CR H NV++ E A ++L 
Sbjct: 487 MEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLL 546

Query: 487 ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD 546
           E+E  +   YVLL+++ A A+ W+E ++V++++E  G++K PG S IE+   ++ FV+ D
Sbjct: 547 EMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASD 606

Query: 547 EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLIN 606
           + HPQ +++  +L +++  +K  GYVP T  V++D+D EEKE +V  HSEKLA+AFGL+ 
Sbjct: 607 KSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMY 666

Query: 607 TSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            S  +TIRI KNLR+C DCH   K +S+   +EI VRD  RFHHFRNG CSC D+W
Sbjct: 667 CSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 195/402 (48%), Gaps = 47/402 (11%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF---DSVDDARHVFDKTR 142
           LL SC    S    L +H+    NG     F +++LI+ +S     D +D +R +F +  
Sbjct: 15  LLESC---KSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQID 71

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
              +++WN + R  + +    E + LY  M   G     + FT+ ++L +C       S 
Sbjct: 72  CPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIA-PPNNFTFPFLLNSCAR----LSS 126

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L+ G E+H+ +++HG+   + +   LI +Y+ FG +  A  +F +  V+++VS++ MI  
Sbjct: 127 LEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKG 186

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR--RG 320
           YA       AL LF E  M++  + P+  T V++   C+ L     GK IH  + +  R 
Sbjct: 187 YAEVNQPESALCLFGE--MQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRS 244

Query: 321 LDSILPVVSALVTM--------------------------------YARCGKLELGQCVF 348
           +DS + + SA+V M                                YARCG++ + + +F
Sbjct: 245 IDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLF 304

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           +HM +RDV+SW ++IS Y   G   +A+++FKEM   G+ P  ++ V+VL AC+  G  +
Sbjct: 305 NHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFD 364

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
            GK L+    +  +   +    A ++D+  +   ++ A +I 
Sbjct: 365 LGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIF 406



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 162/347 (46%), Gaps = 10/347 (2%)

Query: 183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC---VM 239
           RF        C+  SC     K G +IHA  + +G +  +  ++ LI  ++  G    + 
Sbjct: 4   RFLLENPSSLCLLESC--KSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLD 61

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
           ++  +FSQ+   N+  W+ MI  Y+R+    EA+ L+  MI +     PN+ T   +L +
Sbjct: 62  HSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKG-IAPPNNFTFPFLLNS 120

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           CA L++LE G  +H +I++ G +S L V +AL+ +Y+  G L L + +FD    RD+VS+
Sbjct: 121 CARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSY 180

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           N++I  Y        A+ +F EM   G+ P   +FV++   CS       GK +   + K
Sbjct: 181 NTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYK 240

Query: 420 E-HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
               I  ++   + +VD+  +   +  A ++   +        W S++        + +A
Sbjct: 241 NLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVA 300

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
            +    + E +     ++  +   Y+ A    E   + + +EA G++
Sbjct: 301 RKLFNHMHERDVI---SWTAMISGYSQAGQCSEALELFKEMEALGIK 344


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/661 (38%), Positives = 379/661 (57%), Gaps = 36/661 (5%)

Query: 9   TPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQA 68
           +P LL  PY   S+  L P+P                 LS+   N L+++L   G+   A
Sbjct: 62  SPTLL--PYAV-SLFRLGPRPP----------------LSTPCYNVLMRALLHAGHPEDA 102

Query: 69  L-------DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKL 121
           L       DV S+ P+  QHT    L SC+   +L     + ++    G   D F+++ L
Sbjct: 103 LHLFVEMLDVASVCPD--QHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSL 160

Query: 122 INVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
           I++Y+    V  A+ +FD      + +WNA+  A    G   EV+E+++ M     G+  
Sbjct: 161 IHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGM--LEVGVAF 218

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
           D  T   V+ AC     G +  K GK +   V   G     ++MT LIDMYA+ G +  A
Sbjct: 219 DEITLVSVVTAC--GRIGDA--KLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKA 274

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
             +F  M  ++VV+WSAMI+ Y +     EAL LF EM +   ++ PN VTMVSVL ACA
Sbjct: 275 RRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLA--EVEPNDVTMVSVLSACA 332

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            L ALE GK +H YI R+ L   + + +ALV  YA+CG ++     F+ M  ++  +W +
Sbjct: 333 VLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTA 392

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           LI     +G G +A+++F  M    + P+ ++F+ VL ACSH+ LVEEG+  F+SM +++
Sbjct: 393 LIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDY 452

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
            I+P  EHY C+VDLLGRA  ++EA + I  + IEP   +W +LL SC +H NVE+ E A
Sbjct: 453 GIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEA 512

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS 541
            K++  L P+++G+Y+LL+++YA+   W     +++ ++ RG++K PG S IE+   +  
Sbjct: 513 LKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVE 572

Query: 542 FVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVA 601
           F + D  HPQ ++++  +  +   +K  GY+P T  V  ++D  EKE  V  HSEKLA+A
Sbjct: 573 FFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIA 632

Query: 602 FGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
           FGL+    G TIR++KNLR+C DCHS TK ISK  N+EI+VRD NRFHHF++G CSC DY
Sbjct: 633 FGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDY 692

Query: 662 W 662
           W
Sbjct: 693 W 693


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/614 (39%), Positives = 376/614 (61%), Gaps = 18/614 (2%)

Query: 51  NKNEL-IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDN 109
           NK +L  Q L  Q  + +  D  S  P      +E LL S      L +   VH+H+  +
Sbjct: 2   NKIKLQTQQLAFQHPVTRNFDTQSHSP-----VHEALLRSGPR---LRNLQQVHAHIIVS 53

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           G  +   L+TKLI++     S+  AR +F        +++++L +  +  G   + +  Y
Sbjct: 54  GLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFY 113

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           RRM    +G     +T+T V+KAC       S L+ GKEIH+ V+  GY   +++   LI
Sbjct: 114 RRM--LFSGAPQSNYTFTSVIKACA----DLSALRLGKEIHSHVMVCGYGSDMYVQAALI 167

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
            +YA+   +  A  VF  M  + +++W+++I+ Y +NG+  E++ LF  ++MES    P+
Sbjct: 168 ALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLF-HLMMES-GFQPD 225

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
           S T+VS+L +C+ L AL+ G  +H Y    G D  + + ++L+ MY RCG +   + VFD
Sbjct: 226 SATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFD 285

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
            M +R+VV+W ++IS YG+HGYG +A+++F EM  +G  P+ I+FV+VL AC+H+GL+++
Sbjct: 286 SMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDD 345

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED-LRIEPGPKVWGSLLGS 468
           G+ +F SM++ + + P VEH  CMVD+ GRA  L +A + I+  +  EPGP VW S+LG+
Sbjct: 346 GRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGA 405

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CR+H N +L  + ++ +  +EP N G+YV+L+++YA A   D V+ V+ ++  R L+K  
Sbjct: 406 CRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQV 465

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S IE+ RK Y F   D+ HPQ   ++  L  L     E GYVP  + +++DL+ EE++
Sbjct: 466 GYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERD 525

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSEKLA+AFGL+ T++GETIRI KNLR+CEDCHS  K IS  A++EI+VRD  RF
Sbjct: 526 YALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRF 585

Query: 649 HHFRNGVCSCGDYW 662
           HHF++G CSC DYW
Sbjct: 586 HHFKDGSCSCLDYW 599


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/645 (37%), Positives = 380/645 (58%), Gaps = 11/645 (1%)

Query: 12  LLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDV 71
           L+RSP    +  H P  P S      +      +    ++K+ L +S    G    ALD+
Sbjct: 18  LVRSPPSGFATIHAPAAPFSDSNDSEVEDGDAASFCVFQDKDLLRKSQSDGGTGLYALDL 77

Query: 72  LSIEP-NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF-DQDPFLVTKLINVYSHFD 129
           +      P  + Y  LL  CT    +     VH+HL D+ F D    L   ++N+Y+   
Sbjct: 78  IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCG 137

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
            +DDAR +FD+   + +  W AL    +   R  + L L+ +M     G + + FT + +
Sbjct: 138 CLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQM--LRLGFQPNHFTLSSL 195

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           LKA   S  G   L  G ++HA  L++GY   V++ + L+DMYAR G +  A   F  M 
Sbjct: 196 LKAS-GSEHG---LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMP 251

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            K+ VSW+A+I+ +AR G    AL L  +M  +  +  P   T  SVL ACA++ ALEQG
Sbjct: 252 TKSEVSWNALISGHARKGEGEHALHLLWKM--QRKNFQPTHFTYSSVLSACASIGALEQG 309

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           K +H ++++ GL  I  + + L+ MYA+ G ++  + VFD + K DVVSWN++++    H
Sbjct: 310 KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G G + +  F++M+  G+ P+ ISF+ VL ACSH+GL++EG   FE M+K + + P V H
Sbjct: 370 GLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPH 428

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
           Y   VDLLGR   L+ A + I ++ IEP   VWG+LLG+CR+H N+EL   A++R FEL+
Sbjct: 429 YVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELD 488

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFH 549
           P ++G  +LL+++YA+A  W +V +V+++++  G++K P  S +E++  ++ FV+ DE H
Sbjct: 489 PHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETH 548

Query: 550 PQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSK 609
           P+ +++      +S ++KE GYVP T  VL  +D +E+E  +  HSEKLA+AF L+NT  
Sbjct: 549 PRIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPT 608

Query: 610 GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
           G  IRI KN+R+C DCH+  KF+SK  ++EI+VRD NRFH FR+G
Sbjct: 609 GSPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDG 653


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/612 (38%), Positives = 373/612 (60%), Gaps = 14/612 (2%)

Query: 55  LIQSLCKQGNLRQALD-VLSIEP---NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           L+    + G+ ++AL  VL ++     P   T   +L +     +L    ++H +   +G
Sbjct: 217 LVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSG 276

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           F+    +   L+++Y    S   AR VF   R +T+  WN +       G  EE    + 
Sbjct: 277 FESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFL 336

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           +M     G    R T   VL AC         L+ G  +H  + +   +  V +M +LI 
Sbjct: 337 KM--LDEGEVPTRVTMMGVLLACA----NLGDLERGWFVHKLLDKLKLDSNVSVMNSLIS 390

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MY++   V  A  +F+ +   NV +W+AMI  YA+NG   EAL LF   +M+S  +  + 
Sbjct: 391 MYSKCKRVDIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLF--CMMQSQGIKLDC 447

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T+V V+ A A  +   Q K IHG  +R  +D+ + V +ALV MYA+CG ++  + +FD 
Sbjct: 448 FTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDM 507

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M +R V++WN++I  YG HG G + + +F EM    V P+ I+F+SV+ ACSH+G VEEG
Sbjct: 508 MQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEG 567

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
            +LF+SM++++ + P+++HY+ MVDLLGRA +L++A   I+++ I+PG  V G++LG+C+
Sbjct: 568 LLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACK 627

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
           IH NVEL E+A+++LF+L+P   G +VLLA++YA+  MWD+V +V+  +E +GL K PG 
Sbjct: 628 IHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGC 687

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S +E++ ++++F S    HP+ ++++A L  L  E+K  GYVP    + +D++ + K+++
Sbjct: 688 SWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSI-HDVEEDVKKQL 746

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +  HSE+LA+AFGL+NTS G T+ I KNLR+C DCH  TK+IS    +EI+VRD+ RFHH
Sbjct: 747 LSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHH 806

Query: 651 FRNGVCSCGDYW 662
           F+NG CSCGDYW
Sbjct: 807 FKNGSCSCGDYW 818



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 197/388 (50%), Gaps = 16/388 (4%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
           +H   +LL +CT    L   L     +  NGF  +    TK+I+++  F S  +A  VF+
Sbjct: 47  RHPSVVLLENCTSKKELYQIL---PFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFE 103

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
               +   +++ + +         + L  + RM         D         AC+   CG
Sbjct: 104 HVELKLDVLYHIMLKGYAKNSSLGDALCFFLRM-------MCDEVRLVVGDYACLLQLCG 156

Query: 200 FSL-LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
            +L LK G+EIH  ++ +G+   + +MT ++ +YA+   +  A  +F +M  K++VSW+ 
Sbjct: 157 ENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTT 216

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           ++A YA+NG A  AL+L  +M        P+SVT+VS+L A A + AL  G+ IHGY  R
Sbjct: 217 LVAGYAQNGHAKRALQLVLQMQEAGQK--PDSVTLVSILPAVADMKALRIGRSIHGYAFR 274

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
            G +S++ V +AL+ MY +CG   + + VF  M  + VVSWN++I     +G   +A   
Sbjct: 275 SGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFAT 334

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
           F +M+  G  P+ ++ + VL AC++ G +E G  + + + K  +   +V     ++ +  
Sbjct: 335 FLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKL-DSNVSVMNSLISMYS 393

Query: 439 RANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           +  +++ AA I  +L  E     W +++
Sbjct: 394 KCKRVDIAASIFNNL--EKTNVTWNAMI 419



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 122/243 (50%), Gaps = 9/243 (3%)

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + + N   T + S R     +L+ C +        K   +I   ++++G+       T +
Sbjct: 33  FYQSNSIPTRVYSHRHPSVVLLENCTSK-------KELYQILPFIIKNGFYNEHLFQTKV 85

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I ++ +FG    A  VF  + +K  V +  M+  YA+N    +AL  F  M+ +   L  
Sbjct: 86  ISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVV 145

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
                  +LQ C     L++G+ IHG I+  G +S L V++A++++YA+C +++    +F
Sbjct: 146 GDYA--CLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMF 203

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + M  +D+VSW +L++ Y  +G+  +A+Q+  +M   G  P  ++ VS+L A +    + 
Sbjct: 204 ERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALR 263

Query: 409 EGK 411
            G+
Sbjct: 264 IGR 266


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/630 (38%), Positives = 366/630 (58%), Gaps = 43/630 (6%)

Query: 68  ALDVLSIEPNP--TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN-- 123
           +L +L   P    +   ++L L      +++++    HS +   G   D   + ++I   
Sbjct: 3   SLQLLQASPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFC 62

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
             S    ++ A  VFDK      Y++N +FR           + +Y RM      +  ++
Sbjct: 63  AISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRM--LHKSVSPNK 120

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY-------NGIVHIM----------- 225
           FTY  +++AC    C    ++ GK+IHA VL+ G+       N ++H+            
Sbjct: 121 FTYPPLIRAC----CIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARR 176

Query: 226 -------------TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
                        T+LI  Y+++G V  A  VF  M  +N VSW+AMIA Y ++    EA
Sbjct: 177 VFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEA 236

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
             LF  M +E  ++  +     S+L AC  L ALEQGK IHGYI + G++    + + ++
Sbjct: 237 FALFDRMRLE--NVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVI 294

Query: 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI 392
            MY +CG LE    VF+ + ++ + SWN +I    +HG G  AI++FKEM    V+P  I
Sbjct: 295 DMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGI 354

Query: 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           +FV+VL AC+H+GLVEEGK  F+ M +   ++P +EH+ CMVDLLGRA  LEEA K+I +
Sbjct: 355 TFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINE 414

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
           + + P   V G+L+G+CRIH N EL E+  K++ ELEP N+G YVLLA++YA+A  W++V
Sbjct: 415 MPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDV 474

Query: 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV 572
            +V++L+  RG++K PG S IE +  +  F++    HPQ ++++A L  +   ++  GYV
Sbjct: 475 AKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYV 534

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
           P T  VL+D+D EEKE  +  HSEKLA+AFGL+ T  GET+RI+KNLR+C DCH  +K I
Sbjct: 535 PDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLI 594

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           SK  ++EI++RD NRFHHFR G CSC DYW
Sbjct: 595 SKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/617 (38%), Positives = 355/617 (57%), Gaps = 47/617 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH---------- 127
           P  + +  +L SC     L+   ++H ++   G D D +    L+N+YS           
Sbjct: 104 PDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQ 163

Query: 128 -------FD---------------SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
                  FD               S D  R +F+    + +  WN +       G  EE 
Sbjct: 164 RLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEET 223

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L + R M   G  ++ D FT + VL   +A +   S    GKEIH   +R G +  +++ 
Sbjct: 224 LRMIREMG--GANLKPDSFTLSSVL-PLIAENVDIS---RGKEIHGCSIRQGLDADIYVA 277

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           ++LIDMYA+   V  +  VF+ +  ++ +SW+++IA   +NG+  E L  FR+M+M    
Sbjct: 278 SSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK-- 335

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + P S +  S++ ACA L  L  GK +HGYI R G D  + + S+LV MYA+CG +   +
Sbjct: 336 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAK 395

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +FD M  RD+VSW ++I    +HG    AI++F++M   G+        +VL ACSH G
Sbjct: 396 QIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGG 448

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           LV+E    F SM ++  I P VEHYA + DLLGRA +LEEA   I  + I P   +W +L
Sbjct: 449 LVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATL 508

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           L +CR+H N+++AE+ + R+ E++P N G Y+LLA++Y+AA  W E  + +  +   G++
Sbjct: 509 LSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIR 568

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K P  S IEVK K+Y+F++ DE HP +E++   +  L   M+++GYVP T  V +D++ E
Sbjct: 569 KTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEE 628

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           +K+ +V  HSE+LA+ FG+INT  G TIR+TKNLR+C DCH+ TKFISK   +EI+VRD 
Sbjct: 629 QKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDN 688

Query: 646 NRFHHFRNGVCSCGDYW 662
           +RFHHF+NG CSCGDYW
Sbjct: 689 SRFHHFKNGTCSCGDYW 705



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 188/409 (45%), Gaps = 46/409 (11%)

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +YSH + + D+  +F+         W ++ R  T  G   + L  +  M    +G+  D 
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGM--LASGLYPDH 106

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
             +  VLK+C         L  G+ +H  ++R G +  ++    L++MY++   +  +G 
Sbjct: 107 NVFPSVLKSCAL----LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGR 162

Query: 244 --------------------------------VFSQMAVKNVVSWSAMIACYARNGMAFE 271
                                           +F  M  K++VSW+ +IA  ARNG+  E
Sbjct: 163 QRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEE 222

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
            L + RE  M   +L P+S T+ SVL   A    + +GK IHG  +R+GLD+ + V S+L
Sbjct: 223 TLRMIRE--MGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSL 280

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MYA+C ++     VF  + +RD +SWNS+I+    +G   + ++ F++M+   + P  
Sbjct: 281 IDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKS 340

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
            SF S++ AC+H   +  GK L   + + +    ++   + +VD+  +   +  A +I +
Sbjct: 341 YSFSSIMPACAHLTTLHLGKQLHGYITR-NGFDENIFIASSLVDMYAKCGNIRTAKQIFD 399

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            +R+      W +++  C +H     A      LFE   T     VL A
Sbjct: 400 RMRLRDMVS-WTAMIMGCALHGQAPDA----IELFEQMETEGIKAVLTA 443



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 147/323 (45%), Gaps = 21/323 (6%)

Query: 53  NELIQSLCKQG----NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G     LR   ++      P   T   +L     +  +S    +H     
Sbjct: 208 NTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIR 267

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G D D ++ + LI++Y+    V D+  VF     R    WN++       G  +E L  
Sbjct: 268 QGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRF 327

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +R+M      I+   ++++ ++ AC       + L  GK++H  + R+G++  + I ++L
Sbjct: 328 FRQM--LMAKIKPKSYSFSSIMPACAH----LTTLHLGKQLHGYITRNGFDENIFIASSL 381

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +DMYA+ G +  A  +F +M ++++VSW+AMI   A +G A +A+ELF +M  E      
Sbjct: 382 VDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEG----- 436

Query: 289 NSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
               + +VL AC+    +++  K  +      G+   +   +A+  +  R G+LE     
Sbjct: 437 ----IKAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDF 492

Query: 348 FDHMDKRDVVS-WNSLISSYGVH 369
              M      S W +L+S+  VH
Sbjct: 493 ICGMHIGPTGSIWATLLSACRVH 515


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/614 (38%), Positives = 359/614 (58%), Gaps = 45/614 (7%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+S        +AL +    LS   NP  +T+  +L +C+  ++L   L VH  +  
Sbjct: 106 NVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVK 165

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G D + F+   L+ +Y     + +AR V D+   R +  WN++      +G+ ++ LE+
Sbjct: 166 VGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEI 225

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            + M+                             L H     AS+             + 
Sbjct: 226 CKEMDSLN--------------------------LNHDAGTMASL-------------SP 246

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +  Y     V Y   +F +M  KN++SW+ MIA Y  N M  EA+ LF +M  E   + P
Sbjct: 247 VVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQM--EECGMKP 304

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           ++VT+ S+L AC  L+AL  G+ +H YI +  L   L + +AL+ MYA+CG LE  + VF
Sbjct: 305 DAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVF 364

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M  RDVVSW S++S+YG  G G  A+ +F +M+  G +P  I+FVSVL ACSH GL++
Sbjct: 365 DKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLD 424

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           +G+  F  M +++ I P +EH+ACMVDL GRA ++EEA   I+ + +EP  +VWG+LL +
Sbjct: 425 QGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSA 484

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CR+H  +++   A+  LF+L P  +G YVLL+++YA A MW +V  V+  ++  G++KVP
Sbjct: 485 CRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVP 544

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +E+  ++++F++ D++HPQ + ++  L  L  +MKE GY+PQT+  L+D++ E+KE
Sbjct: 545 GISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKE 604

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSEKLA+ F ++NT +G  IRITKNLR+C DCH   K ISK  ++ I+VRD NRF
Sbjct: 605 CHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRF 664

Query: 649 HHFRNGVCSCGDYW 662
           HHF NG+CSCGDYW
Sbjct: 665 HHFSNGICSCGDYW 678



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 178/371 (47%), Gaps = 25/371 (6%)

Query: 177 TGIRSDRFTY-TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT-LIDMYAR 234
           T IR DR     +  +AC      +  +K   ++H+ ++ + +  I   +   L+  Y+ 
Sbjct: 24  TRIRFDRLKVEVFSKEACEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSA 83

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G    A ++F +   KNVV ++ MI  Y  N +  EAL +F+  +M S    P+  T  
Sbjct: 84  QGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQ--VMLSCAFNPDHYTFP 141

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
            VL+AC+ L  L  G  +H  I++ GLD+ L + +ALV MY +CG L   + V D M  R
Sbjct: 142 CVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYR 201

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL--VEEGKM 412
           DVVSWNS+++ Y   G    A++I KEM    ++    +  S+     +  L  V+    
Sbjct: 202 DVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHN 261

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI---IEDLRIEPGPKVWGSLLGSC 469
           +FE M K+++I  +V     M+ +    +   EA  +   +E+  ++P      SLL +C
Sbjct: 262 MFERMTKKNLISWNV-----MIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316

Query: 470 RIHCNVELAERASKRLFE--LEPTNAGNYVLLADVYA-------AADMWDEVKRVKRLLE 520
                + L  R  K + +  L+P       LL D+YA       A D++D++ R++ ++ 
Sbjct: 317 GDLSALFLGRRLHKYIEKGNLQPNLLLENALL-DMYAKCGCLEEARDVFDKM-RLRDVVS 374

Query: 521 ARGLQKVPGRS 531
              +    GRS
Sbjct: 375 WTSMMSAYGRS 385


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/562 (41%), Positives = 351/562 (62%), Gaps = 9/562 (1%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VHS     G  +   ++T LI++YS    V+ AR +FD   +  +  +NAL    ++ G 
Sbjct: 234 VHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGM 293

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
               + L+  +   G    S     T V    V S  G  LL   + +H  VL+ G+   
Sbjct: 294 VGSSVNLFTELMTLGLWPNSS----TLVALIPVHSPFGHDLL--AQCLHGFVLKSGFTAN 347

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
             + T +  ++ R   +  A   F  M  K + SW+AMI+ YA+NG+   A+ LF +M+ 
Sbjct: 348 SPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMV- 406

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
              ++ PN +T+ S L ACA L AL  GK +H  I    L+  + V++AL+ MYA+CG +
Sbjct: 407 -KLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSI 465

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
              + +F+ MD ++VVSWN++I+ YG+HG G +A++++K+M+   + P+  +F+SVL AC
Sbjct: 466 SEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYAC 525

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPK 460
           SH GLVEEG  +F SM  ++ I P +EH  CMVDLLGRA +L+EA ++I +  +   GP 
Sbjct: 526 SHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPG 585

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
           VWG+LLG+C +H + +LA+ AS++LFEL+P N+G YVLL++++ +   + E   V++  +
Sbjct: 586 VWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAK 645

Query: 521 ARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY 580
           +R L K PG + IE+  K + F++ D  HPQ E +++ L  L+A+M E GY P+T+  LY
Sbjct: 646 SRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALY 705

Query: 581 DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEI 640
           D++ EEKE +V  HSEKLA+AFGL++T  G  IRI KNLR+C DCH+ TKFISK   + I
Sbjct: 706 DVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLI 765

Query: 641 LVRDVNRFHHFRNGVCSCGDYW 662
           +VRD +RFHHFR+GVCSCGDYW
Sbjct: 766 VVRDASRFHHFRDGVCSCGDYW 787



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 192/382 (50%), Gaps = 15/382 (3%)

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           D F+ + L  +Y     VD AR VFD        +WN L   L+    G E +E + RM 
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMV 203

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
             G+ +R D  T   VL A    +   + +  G+ +H+   + G     H++T LI +Y+
Sbjct: 204 CDGS-VRPDATTLASVLPA----AAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYS 258

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G V  A  +F  M   ++V+++A+I+ Y+ NGM   ++ LF E++  +  L PNS T+
Sbjct: 259 KCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELM--TLGLWPNSSTL 316

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
           V+++   +        + +HG++L+ G  +  PV +A+ T++ R   +E  +  FD M +
Sbjct: 317 VALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPE 376

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           + + SWN++IS Y  +G    A+ +F++M+   V P+PI+  S L AC+  G +  GK L
Sbjct: 377 KTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWL 436

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
              + +E +  P+V     ++D+  +   + EA +I   +        W +++    +H 
Sbjct: 437 HRIITEEDL-EPNVYVMTALIDMYAKCGSISEARRIFNTMD-NKNVVSWNAMIAGYGLHG 494

Query: 474 NVELAERASKRLFE--LEPTNA 493
               A +  K + +  L PT+A
Sbjct: 495 QGAEALKLYKDMLDAHLLPTSA 516



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 153/327 (46%), Gaps = 41/327 (12%)

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           + + L  +Y     V +A  VF  +   + V W+ ++A  + +    EA+E F  M+ + 
Sbjct: 151 VASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVCDG 206

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
             + P++ T+ SVL A A +A +  G+ +H +  + GL     V++ L+++Y++CG +E 
Sbjct: 207 -SVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVES 265

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS------- 396
            +C+FD M+K D+V++N+LIS Y V+G  G ++ +F E++  G+ P+  + V+       
Sbjct: 266 ARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSP 325

Query: 397 ----VLGACSHAGLVEEGKML-----------------FESMRK--EHMIRPSVEHYACM 433
               +L  C H  +++ G                     ES RK  + M   ++E +  M
Sbjct: 326 FGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAM 385

Query: 434 VDLLGRANKLEEAAKIIED---LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE--L 488
           +    +    E A  + E    L + P P    S L +C     + L +   + + E  L
Sbjct: 386 ISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDL 445

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRV 515
           EP N      L D+YA      E +R+
Sbjct: 446 EP-NVYVMTALIDMYAKCGSISEARRI 471



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 18/220 (8%)

Query: 53  NELIQSLCKQGNLRQALDV------LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I    + G    A+ +      L++ PNP   T    L +C    +LS    +H  +
Sbjct: 383 NAMISGYAQNGLTEMAVALFEQMVKLNVRPNPI--TISSTLSACAQLGALSLGKWLHRII 440

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           T+   + + +++T LI++Y+   S+ +AR +F+    + +  WNA+     L G+G E L
Sbjct: 441 TEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEAL 500

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL-RHGYNGIVHIM 225
           +LY+ M      +     T+  VL AC   S G  L++ G ++  S+   +  N  +   
Sbjct: 501 KLYKDM--LDAHLLPTSATFLSVLYAC---SHG-GLVEEGWKVFRSMTDDYAINPGIEHC 554

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVS--WSAMI-AC 262
           T ++D+  R G +  A  + S+     V    W A++ AC
Sbjct: 555 TCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGAC 594


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/583 (38%), Positives = 360/583 (61%), Gaps = 18/583 (3%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           TY  L+  C+   ++ +   VH H+   G++   F+V  L+N+Y  F+ +++A  +FD+ 
Sbjct: 57  TYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEM 116

Query: 142 RRRTIYVWNALFRALT--LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
             R +  W  +  A +  L  +  + L L  R      G+R + FTY+ VL+AC      
Sbjct: 117 PERNVVSWTTMISAYSNKLNDKALKCLILMFR-----EGVRPNMFTYSSVLRACDG---- 167

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
              L + +++H  +++ G    V + + LID+Y+++  +  A  VF +M  +++V W+++
Sbjct: 168 ---LPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSI 224

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I  +A+N    EAL LF+ M  +      +  T+ SVL+AC  LA LE G+ +H ++L+ 
Sbjct: 225 IGGFAQNSDGNEALNLFKRM--KRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKF 282

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
             D IL   +AL+ MY +CG LE     F  M ++DV+SW+++++    +GY  +A+++F
Sbjct: 283 DQDLILN--NALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELF 340

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           + M   G  P+ I+ + VL ACSHAGLVE+G   F SM+K   + P  EHY C++DLLGR
Sbjct: 341 ESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGR 400

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           A +L+EA K+I ++  EP    W +LLG+CR+H NV+LA  A+K++ ELEP +AG Y+LL
Sbjct: 401 AGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILL 460

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           +++YA    W++V  V++ +  RG++K PG S IEV ++++ F+  D  HP+ E++   L
Sbjct: 461 SNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRL 520

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
            +L   +   GYVP T  VL DL+ E+KE  +  HSEKLA+ FGL+N S+ +T+RI KNL
Sbjct: 521 NDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNL 580

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCH F K +S+  ++ I++RD  R+HHF++GVCSCGDYW
Sbjct: 581 RICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 199/442 (45%), Gaps = 57/442 (12%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G+ +D  TY+ ++K C A       ++ GK +H  +   GY   + ++ TL++MY +F  
Sbjct: 50  GVFADAITYSELIKCCSARGA----VQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNL 105

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYAR--NGMAFEALEL-FREMIMESHDLCPNSVTMV 294
           +  A  +F +M  +NVVSW+ MI+ Y+   N  A + L L FRE +       PN  T  
Sbjct: 106 LEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVR------PNMFTYS 159

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           SVL+AC  L  L Q   +H  I++ GL+S + V SAL+ +Y++   L+    VFD M  R
Sbjct: 160 SVLRACDGLPNLRQ---LHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTR 216

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           D+V WNS+I  +  +  G +A+ +FK M   G      +  SVL AC+   L+E G+ + 
Sbjct: 217 DLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVH 276

Query: 415 ESMRK----------------------------EHMIRPSVEHYACMVDLLGRANKLEEA 446
             + K                              M+   V  ++ MV  L +     +A
Sbjct: 277 VHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQA 336

Query: 447 AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE------RASKRLFELEPTNAGNYVLLA 500
            ++ E ++       + ++LG      +  L E      R+ K+LF ++P    +Y  L 
Sbjct: 337 LELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGRE-HYGCLI 395

Query: 501 DVYAAADMWDEVKRVKRLLEAR----GLQKVPGRSRI--EVKRKMYSFVSVDEFHPQFEQ 554
           D+   A   DE  ++   +E        + + G  R+   V   +Y+   + E  P+   
Sbjct: 396 DLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAG 455

Query: 555 LHALLINLSAEMKEKGYVPQTK 576
            + LL N+ A  +    V + +
Sbjct: 456 TYILLSNIYANTQRWEDVAEVR 477



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 103/195 (52%), Gaps = 22/195 (11%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           ME H +  +++T   +++ C+A  A+++GK +H +I  +G +  + VV+ L+ MY +   
Sbjct: 46  MERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNL 105

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           LE  + +FD M +R+VVSW ++IS+Y  +    KA++    M   GV P+  ++ SVL A
Sbjct: 106 LEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRA 164

Query: 401 CS--------HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           C         H G+++ G      +  +  +R +      ++D+  + + L+ A  + ++
Sbjct: 165 CDGLPNLRQLHCGIIKTG------LESDVFVRSA------LIDVYSKWSDLDNALGVFDE 212

Query: 453 LRIEPGPKVWGSLLG 467
           +       VW S++G
Sbjct: 213 MPTRD-LVVWNSIIG 226


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/585 (38%), Positives = 359/585 (61%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L +C+   +      +H  +     D D ++   L+++Y+    +DDAR V
Sbjct: 301 PNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKV 360

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    R + + NAL    +  GR +E L L+  +   G G+  +R T   VLK    S+
Sbjct: 361 FDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGV--NRTTLAAVLK----ST 414

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                    +++HA  ++ G+    H++  LID Y +  C+  A  VF + +  ++++ +
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACT 474

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           +MI   ++      A++LF EM+ +   L P+   + S+L ACA+L+A EQGK +H +++
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKG--LEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           +R   S     +ALV  YA+CG +E  +  F  + +R VVSW+++I     HG+G +A++
Sbjct: 533 KRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALE 592

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F  M+  G++P+ I+  SVL AC+HAGLV+E K  F SM++   I  + EHY+CM+DLL
Sbjct: 593 LFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLL 652

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA KL++A +++  +  +    +WG+LLG+ R+H + EL + A+++LF LEP  +G +V
Sbjct: 653 GRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHV 712

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LLA+ YA+A MW+EV +V++L++   ++K P  S IEVK K+++F+  D+ HP  ++++A
Sbjct: 713 LLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYA 772

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L+ L   M + G+VP   V L+DLD  EKE ++  HSE+LAVAF L++T  G  IR+ K
Sbjct: 773 KLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKK 832

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH   KFISK  ++EI++RD+NRFHHFR+G CSCGDYW
Sbjct: 833 NLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 198/408 (48%), Gaps = 52/408 (12%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT-RRRTIYVWNALFRALTLA 159
            VH+     GF  D F+   L+ +Y  F  +DDAR VF++    R    WN L  A    
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
            +  + ++++  M    +GI+   F ++ V+ AC  S      ++ G+++HA V+R GY+
Sbjct: 181 DQCGDAIQVFGEM--VWSGIQPTEFGFSCVVNACTGSRN----IEAGRQVHAMVVRMGYD 234

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             V     L+DMY + G V  A  +F +M   +VVSW+A+I+    NG    A+EL  + 
Sbjct: 235 KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ- 293

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
            M+   L PN  T+ S+L+AC+   A + G+ IHG++++   DS   +   LV MYA+  
Sbjct: 294 -MKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            L+  + VFD M  RD++  N+LIS     G   +A+ +F E+   G+  +  +  +VL 
Sbjct: 353 FLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLK 412

Query: 400 ACS-----------HAGLVEEGKMLFESMRKEHMIRPSVEHY------------------ 430
           + +           HA  V+ G  +F++    H++   ++ Y                  
Sbjct: 413 STASLEAASTTRQVHALAVKIG-FIFDA----HVVNGLIDSYWKCSCLSDANRVFEECSS 467

Query: 431 ----AC--MVDLLGRANKLEEAAKI-IEDLR--IEPGPKVWGSLLGSC 469
               AC  M+  L + +  E A K+ +E LR  +EP P V  SLL +C
Sbjct: 468 GDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 208/441 (47%), Gaps = 15/441 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            PT+  +  ++ +CT   ++     VH+ +   G+D+D F    L+++Y     VD A  
Sbjct: 199 QPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASV 258

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +F+K     +  WNAL     L G     +EL  +M    +G+  + FT + +LKAC  +
Sbjct: 259 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK--YSGLVPNVFTLSSILKACSGA 316

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
              F L   G++IH  +++   +   +I   L+DMYA+   +  A  VF  M  ++++  
Sbjct: 317 G-AFDL---GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILC 372

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +A+I+  +  G   EAL LF E+  E   L  N  T+ +VL++ A+L A    + +H   
Sbjct: 373 NALISGCSHGGRHDEALSLFYELRKEG--LGVNRTTLAAVLKSTASLEAASTTRQVHALA 430

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++ G      VV+ L+  Y +C  L     VF+     D+++  S+I++     +G  AI
Sbjct: 431 VKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAI 490

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           ++F EM+  G+ P P    S+L AC+     E+GK +   + K   +  +    A +V  
Sbjct: 491 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYT 549

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
             +   +E+A      L  E G   W +++G    H + + A     R+ + E  N  N+
Sbjct: 550 YAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVD-EGINP-NH 606

Query: 497 VLLADVYAA---ADMWDEVKR 514
           + +  V  A   A + DE KR
Sbjct: 607 ITMTSVLCACNHAGLVDEAKR 627



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 167/334 (50%), Gaps = 17/334 (5%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LI+ YS       AR  FD+        W++L  A +  G     ++ +  M   G  + 
Sbjct: 43  LISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEG--VC 100

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            + F    VLK CV  +      + G ++HA  +  G+   V +   L+ MY  FG +  
Sbjct: 101 CNEFALPVVLK-CVPDA------RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDD 153

Query: 241 AGFVFSQM-AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
           A  VF++  + +N VSW+ +++ Y +N    +A+++F EM+     + P       V+ A
Sbjct: 154 ARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG--IQPTEFGFSCVVNA 211

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           C     +E G+ +H  ++R G D  +   +ALV MY + G++++   +F+ M   DVVSW
Sbjct: 212 CTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSW 271

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           N+LIS   ++G+  +AI++  +M Y G+ P+  +  S+L ACS AG  + G+ +   M K
Sbjct: 272 NALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIK 331

Query: 420 EHMIRPSVEHY--ACMVDLLGRANKLEEAAKIIE 451
            +      + Y    +VD+  + + L++A K+ +
Sbjct: 332 AN---ADSDDYIGVGLVDMYAKNHFLDDARKVFD 362


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/585 (38%), Positives = 359/585 (61%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L +C+   +      +H  +     D D ++   L+++Y+    +DDAR V
Sbjct: 301 PNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKV 360

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    R + + NAL    +  GR +E L L+  +   G G+  +R T   VLK    S+
Sbjct: 361 FDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGV--NRTTLAAVLK----ST 414

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                    +++HA  ++ G+    H++  LID Y +  C+  A  VF + +  ++++ +
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACT 474

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           +MI   ++      A++LF EM+ +   L P+   + S+L ACA+L+A EQGK +H +++
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKG--LEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           +R   S     +ALV  YA+CG +E  +  F  + +R VVSW+++I     HG+G +A++
Sbjct: 533 KRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALE 592

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F  M+  G++P+ I+  SVL AC+HAGLV+E K  F SM++   I  + EHY+CM+DLL
Sbjct: 593 LFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLL 652

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA KL++A +++  +  +    +WG+LLG+ R+H + EL + A+++LF LEP  +G +V
Sbjct: 653 GRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHV 712

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LLA+ YA+A MW+EV +V++L++   ++K P  S IEVK K+++F+  D+ HP  ++++A
Sbjct: 713 LLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYA 772

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L+ L   M + G+VP   V L+DLD  EKE ++  HSE+LAVAF L++T  G  IR+ K
Sbjct: 773 KLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKK 832

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH   KFISK  ++EI++RD+NRFHHFR+G CSCGDYW
Sbjct: 833 NLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 198/408 (48%), Gaps = 52/408 (12%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT-RRRTIYVWNALFRALTLA 159
            VH+     GF  D F+   L+ +Y  F  +DDAR VF++    R    WN L  A    
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
            +  + ++++  M    +GI+   F ++ V+ AC  S      ++ G+++HA V+R GY+
Sbjct: 181 DQCGDAIQVFGEM--VWSGIQPTEFGFSCVVNACTGSRN----IEAGRQVHAMVVRMGYD 234

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             V     L+DMY + G V  A  +F +M   +VVSW+A+I+    NG    A+EL  + 
Sbjct: 235 KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ- 293

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
            M+   L PN  T+ S+L+AC+   A + G+ IHG++++   DS   +   LV MYA+  
Sbjct: 294 -MKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            L+  + VFD M  RD++  N+LIS     G   +A+ +F E+   G+  +  +  +VL 
Sbjct: 353 FLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLK 412

Query: 400 ACS-----------HAGLVEEGKMLFESMRKEHMIRPSVEHY------------------ 430
           + +           HA  V+ G  +F++    H++   ++ Y                  
Sbjct: 413 STASLEAASTTRQVHALAVKIG-FIFDA----HVVNGLIDSYWKCSCLSDANRVFEECSS 467

Query: 431 ----AC--MVDLLGRANKLEEAAKI-IEDLR--IEPGPKVWGSLLGSC 469
               AC  M+  L + +  E A K+ +E LR  +EP P V  SLL +C
Sbjct: 468 GDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 208/441 (47%), Gaps = 15/441 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            PT+  +  ++ +CT   ++     VH+ +   G+D+D F    L+++Y     VD A  
Sbjct: 199 QPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASV 258

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +F+K     +  WNAL     L G     +EL  +M    +G+  + FT + +LKAC  +
Sbjct: 259 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK--YSGLVPNVFTLSSILKACSGA 316

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
              F L   G++IH  +++   +   +I   L+DMYA+   +  A  VF  M  ++++  
Sbjct: 317 G-AFDL---GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILC 372

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +A+I+  +  G   EAL LF E+  E   L  N  T+ +VL++ A+L A    + +H   
Sbjct: 373 NALISGCSHGGRHDEALSLFYELRKEG--LGVNRTTLAAVLKSTASLEAASTTRQVHALA 430

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++ G      VV+ L+  Y +C  L     VF+     D+++  S+I++     +G  AI
Sbjct: 431 VKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAI 490

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           ++F EM+  G+ P P    S+L AC+     E+GK +   + K   +  +    A +V  
Sbjct: 491 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYT 549

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
             +   +E+A      L  E G   W +++G    H + + A     R+ + E  N  N+
Sbjct: 550 YAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVD-EGINP-NH 606

Query: 497 VLLADVYAA---ADMWDEVKR 514
           + +  V  A   A + DE KR
Sbjct: 607 ITMTSVLCACNHAGLVDEAKR 627



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 168/334 (50%), Gaps = 17/334 (5%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LI+ YS       AR VFD+        W++L  A +  G     ++ +  M   G  + 
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEG--VC 100

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            + F    VLK CV  +      + G ++HA  +  G+   V +   L+ MY  FG +  
Sbjct: 101 CNEFALPVVLK-CVPDA------RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDD 153

Query: 241 AGFVFSQM-AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
           A  VF++  + +N VSW+ +++ Y +N    +A+++F EM+     + P       V+ A
Sbjct: 154 ARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG--IQPTEFGFSCVVNA 211

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           C     +E G+ +H  ++R G D  +   +ALV MY + G++++   +F+ M   DVVSW
Sbjct: 212 CTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSW 271

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           N+LIS   ++G+  +AI++  +M Y G+ P+  +  S+L ACS AG  + G+ +   M K
Sbjct: 272 NALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIK 331

Query: 420 EHMIRPSVEHY--ACMVDLLGRANKLEEAAKIIE 451
            +      + Y    +VD+  + + L++A K+ +
Sbjct: 332 AN---ADSDDYIGVGLVDMYAKNHFLDDARKVFD 362


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/585 (38%), Positives = 358/585 (61%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T    L +C           +HS L       D F    L+++YS  + +DDAR  
Sbjct: 282 PNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRA 341

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           +D   ++ I  WNAL    +  G   + + L+ +M      I  ++ T + VLK+ VAS 
Sbjct: 342 YDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKM--FSEDIDFNQTTLSTVLKS-VAS- 397

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                +K  K+IH   ++ G     +++ +L+D Y +   +  A  +F +   +++V+++
Sbjct: 398 --LQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYT 455

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           +MI  Y++ G   EAL+L+ +M  +  D+ P+     S+L ACA L+A EQGK +H + +
Sbjct: 456 SMITAYSQYGDGEEALKLYLQM--QDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAI 513

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G    +   ++LV MYA+CG +E     F  +  R +VSW+++I  Y  HG+G +A++
Sbjct: 514 KFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALR 573

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F +M+  GV P+ I+ VSVL AC+HAGLV EGK  FE M     I+P+ EHYACM+DLL
Sbjct: 574 LFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLL 633

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GR+ KL EA +++  +  E    VWG+LLG+ RIH N+EL ++A+K LF+LEP  +G +V
Sbjct: 634 GRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHV 693

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LLA++YA+A MW+ V +V++ ++   ++K PG S IE+K K+Y+F+  D  H + ++++A
Sbjct: 694 LLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYA 753

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  L   + + GY    ++ ++++D  EKE+++  HSEKLAVAFGLI T  G  IR+ K
Sbjct: 754 KLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKK 813

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH+F KF+ K  ++EI+VRD+NRFHHF++G CSCGDYW
Sbjct: 814 NLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 166/320 (51%), Gaps = 8/320 (2%)

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
           + +H+HL   GF +DP L   L+ +YS       AR + D++    +  W++L       
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
           G  EE L ++  M     G++ + FT+  VLKAC         L  G+++H   +  G+ 
Sbjct: 61  GFVEEALLVFNEM--CLLGVKCNEFTFPSVLKACSMKR----DLNMGRKVHGMAVVTGFE 114

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
               +  TL+ MYA+ G +  +  +F  +  +NVVSW+A+ +CY ++ +  EA+ LF+EM
Sbjct: 115 SDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEM 174

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           +     + PN  ++  +L ACA L   + G+ IHG +L+ GLD      +ALV MY++ G
Sbjct: 175 VRSG--IMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAG 232

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           ++E    VF  +   DVVSWN++I+   +H     A+ +  EM   G  P+  +  S L 
Sbjct: 233 EIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALK 292

Query: 400 ACSHAGLVEEGKMLFESMRK 419
           AC+  G  E G+ L  S+ K
Sbjct: 293 ACAAMGFKELGRQLHSSLIK 312



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/524 (24%), Positives = 232/524 (44%), Gaps = 70/524 (13%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           + L+    + G + +AL V +    +     + T+  +L +C+    L+    VH     
Sbjct: 51  SSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVV 110

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF+ D F+   L+ +Y+    +DD+R +F     R +  WNALF     +    E + L
Sbjct: 111 TGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGL 170

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           ++ M    +GI  + F+ + +L AC     G      G++IH  +L+ G +        L
Sbjct: 171 FKEM--VRSGIMPNEFSISIILNACA----GLQEGDLGRKIHGLMLKMGLDLDQFSANAL 224

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +DMY++ G +  A  VF  +A  +VVSW+A+IA    +     AL L  E  M+     P
Sbjct: 225 VDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDE--MKGSGTRP 282

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N  T+ S L+ACAA+   E G+ +H  +++    S L     LV MY++C  ++  +  +
Sbjct: 283 NMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAY 342

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL---------- 398
           D M K+D+++WN+LIS Y   G    A+ +F +M    +  +  +  +VL          
Sbjct: 343 DSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIK 402

Query: 399 ----------------------------GACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
                                       G C+H   ++E   +FE    E ++      Y
Sbjct: 403 VCKQIHTISIKSGIYSDFYVINSLLDTYGKCNH---IDEASKIFEERTWEDLVA-----Y 454

Query: 431 ACMVDLLGRANKLEEAAKI---IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
             M+    +    EEA K+   ++D  I+P P +  SLL +C    N+   E+  K+L  
Sbjct: 455 TSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNAC---ANLSAYEQG-KQLH- 509

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA-RGLQKVPGR 530
               +A  +  + D++A+  + +   +   + +A R   ++P R
Sbjct: 510 ---VHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNR 550



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 148/273 (54%), Gaps = 15/273 (5%)

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYA---RFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           E+HA +++ G++    +   L+ +Y+   RFG   YA  +  + +  +VVSWS++++ Y 
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFG---YARKLVDESSELDVVSWSSLLSGYV 58

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           +NG   EAL +F EM +    +  N  T  SVL+AC+    L  G+ +HG  +  G +S 
Sbjct: 59  QNGFVEEALLVFNEMCLLG--VKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESD 116

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
             V + LV MYA+CG L+  + +F  + +R+VVSWN+L S Y      G+A+ +FKEM+ 
Sbjct: 117 GFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVR 176

Query: 385 HGVSPSPISFVSVLGACSHAGLVEE--GKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
            G+ P+  S   +L AC  AGL E   G+ +   M K  +        A +VD+  +A +
Sbjct: 177 SGIMPNEFSISIILNAC--AGLQEGDLGRKIHGLMLKMGLDLDQFSANA-LVDMYSKAGE 233

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIH-CN 474
           +E A  + +D+   P    W +++  C +H CN
Sbjct: 234 IEGAVAVFQDIA-HPDVVSWNAIIAGCVLHDCN 265



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 10/145 (6%)

Query: 55  LIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           +I +  + G+  +AL +        I+P+P       LL +C + ++      +H H   
Sbjct: 457 MITAYSQYGDGEEALKLYLQMQDADIKPDP--FICSSLLNACANLSAYEQGKQLHVHAIK 514

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF  D F    L+N+Y+   S++DA   F +   R I  W+A+       G G+E L L
Sbjct: 515 FGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRL 574

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKAC 193
           + +M     G+  +  T   VL AC
Sbjct: 575 FNQM--LRDGVPPNHITLVSVLCAC 597


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/586 (40%), Positives = 351/586 (59%), Gaps = 14/586 (2%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           TQ  +  ++  C +   +S A  +H  +  NG D D  + T L+  YS    +DDA  +F
Sbjct: 293 TQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF 352

Query: 139 DKTRR-RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
                 + +  W A+       GR +  + L+ +M   G  +R + FTY+ +L A  A S
Sbjct: 353 CMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREG--VRPNHFTYSTILTANAAVS 410

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                     +IHA V++  Y     + T L D Y++ G    A  +F  +  K++V+WS
Sbjct: 411 --------PSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWS 462

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA-LAALEQGKMIHGYI 316
           AM++ YA+ G    A+++F ++  E  +  PN  T  SVL ACAA  A++EQGK  H   
Sbjct: 463 AMLSGYAQMGDIEGAVKIFLQLAKEGVE--PNEFTFSSVLNACAAPTASVEQGKQFHSCS 520

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++ G  + L V SALVTMYA+ G +E    VF     RD+VSWNS+IS Y  HG G K++
Sbjct: 521 IKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSL 580

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           +IF+EM    +    I+F+ V+ AC+HAGLV EG+  F+ M K++ I P++EHY+CMVDL
Sbjct: 581 KIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDL 640

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
             RA  LE+A  +I  +    G  +W +LL +CR+H NV+L E A+++L  L+P ++  Y
Sbjct: 641 YSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAY 700

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++YA A  W E  +V++L++ + ++K  G S IEVK K +SF++ D  HPQ ++++
Sbjct: 701 VLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIY 760

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  LS  +K+ GY P TK VL+D++ E KE I+  HSE+LA+AFGLI T  G  I+I 
Sbjct: 761 LKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIV 820

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+  K ISK   ++I+VRD NRFHHF+ G CSCGDYW
Sbjct: 821 KNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 208/433 (48%), Gaps = 28/433 (6%)

Query: 43  TPTSLSSRNKNELIQSLCKQGNLRQALDV---LSIEPNPTQHTYELLLLSCTHH--NSLS 97
           TP    SRN N L+    +    ++AL++   L    +PT  +     LSC       L 
Sbjct: 52  TPQQGLSRN-NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSS----LSCVLKVCGCLF 106

Query: 98  DAL---NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           D +    VH      GF +D  + T L+++Y   +SV+D   VFD+ R + +  W +L  
Sbjct: 107 DRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLA 166

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
                G  E+ L+L+ +M     GI+ + FT+  VL    A       ++ G ++H  V+
Sbjct: 167 GYRQNGLNEQALKLFSQMQ--LEGIKPNPFTFAAVLGGLAADGA----VEKGVQVHTMVI 220

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           + G +  + +  ++++MY++   V  A  VF  M  +N VSW++MIA +  NG+  EA E
Sbjct: 221 KSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFE 280

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           LF  M +E   L        +V++ CA +  +   K +H  +++ G D  L + +AL+  
Sbjct: 281 LFYRMRLEGVKL--TQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVA 338

Query: 335 YARCGKLELGQCVFDHMDK-RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           Y++C +++    +F  M   ++VVSW ++IS Y  +G   +A+ +F +M   GV P+  +
Sbjct: 339 YSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFT 398

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           + ++L A      V   ++    ++  +   PSV     + D   +     EAAKI E L
Sbjct: 399 YSTILTA---NAAVSPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDANEAAKIFE-L 452

Query: 454 RIEPGPKVWGSLL 466
             E     W ++L
Sbjct: 453 IDEKDIVAWSAML 465



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 205/420 (48%), Gaps = 24/420 (5%)

Query: 61  KQGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           + G   QAL + S      I+PNP   T+  +L       ++   + VH+ +  +G D  
Sbjct: 170 QNGLNEQALKLFSQMQLEGIKPNP--FTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDST 227

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
            F+   ++N+YS    V DA+ VFD    R    WN++       G   E  EL+ RM  
Sbjct: 228 IFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMR- 286

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
              G++  +  +  V+K C         +   K++H  V+++G +  ++I T L+  Y++
Sbjct: 287 -LEGVKLTQTIFATVIKLCA----NIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSK 341

Query: 235 FGCVMYAGFVFSQM-AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
              +  A  +F  M  V+NVVSW+A+I+ Y +NG    A+ LF +M  E   + PN  T 
Sbjct: 342 CSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREG--VRPNHFTY 399

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
            ++L A AA++  +    IH  +++   ++   V +AL   Y++ G       +F+ +D+
Sbjct: 400 STILTANAAVSPSQ----IHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDE 455

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH-AGLVEEGKM 412
           +D+V+W++++S Y   G    A++IF ++   GV P+  +F SVL AC+     VE+GK 
Sbjct: 456 KDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQ 515

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            F S   +     ++   + +V +  +   +E A ++ +  +++     W S++     H
Sbjct: 516 -FHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKR-QVDRDLVSWNSMISGYAQH 573



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 154/270 (57%), Gaps = 8/270 (2%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           ++ +FD+T ++ +   N L    +   + +E L L+  +  +G+   +D  + + VLK C
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGS--PTDGSSLSCVLKVC 102

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
               C F  +  GK++H   ++ G+   V + T+L+DMY +   V     VF +M VKNV
Sbjct: 103 ---GCLFDRIV-GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNV 158

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW++++A Y +NG+  +AL+LF +M +E   + PN  T  +VL   AA  A+E+G  +H
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQMQLEG--IKPNPFTFAAVLGGLAADGAVEKGVQVH 216

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             +++ GLDS + V +++V MY++   +   + VFD M+ R+ VSWNS+I+ +  +G   
Sbjct: 217 TMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDL 276

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
           +A ++F  M   GV  +   F +V+  C++
Sbjct: 277 EAFELFYRMRLEGVKLTQTIFATVIKLCAN 306


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/564 (40%), Positives = 350/564 (62%), Gaps = 13/564 (2%)

Query: 103 HSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           H+ +   G   D F  + L+     S + S+D A  +F +      + +N + R      
Sbjct: 8   HARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDM 67

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
             EE L  Y+ M     G++ D FTY  +LKAC         ++ G ++HA +L+ G   
Sbjct: 68  NTEEALITYKEM--AERGVKPDNFTYPTLLKACAR----LPAVEEGMQVHAHILKLGLEN 121

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            V +  +LI MY + G +     VF QM  ++V SWSA+I  +A  GM  + L L  +M 
Sbjct: 122 DVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMS 181

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARC 338
            E +     S+ +VSVL AC  L AL+ G+ +HG++LR   GL+ I  V ++L+ MY +C
Sbjct: 182 NEGYWRAEESI-LVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVI--VETSLIEMYLKC 238

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G L  G C+F  M K++ +S++ +IS   +HGYG + ++IF EM+  G+ P  I +V VL
Sbjct: 239 GXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVL 298

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSHAGLV+EG   F  M+ EH I P+++HY CMVDL+GRA K++EA ++I+ + +EP 
Sbjct: 299 NACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPN 358

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             +W SLL + ++H N++  E A+K+LF+L+   A +YV+L+++YA A  W++V R +  
Sbjct: 359 DVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTN 418

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
           + ++GL + PG S +EVKRKM+ FVS D  HPQ E ++ +L  +  ++K +GY P T  V
Sbjct: 419 MFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQV 478

Query: 579 LYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANK 638
           L D+D EEK++ + GHS+KLA+A+ LI+TS+G  +RI +NLR+C DCH++TK IS   ++
Sbjct: 479 LCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDR 538

Query: 639 EILVRDVNRFHHFRNGVCSCGDYW 662
           EI VRD +RFHHF++G CSC DYW
Sbjct: 539 EITVRDRHRFHHFKDGACSCRDYW 562



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 144/297 (48%), Gaps = 15/297 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   TY  LL +C    ++ + + VH+H+   G + D F+   LI++Y     +     V
Sbjct: 86  PDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAV 145

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++   R++  W+AL  A    G   + L L   M+  G   R++      VL AC    
Sbjct: 146 FEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGY-WRAEESILVSVLSACTH-- 202

Query: 198 CGFSLLKHGKEIHASVLRH--GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
                L  G+ +H  +LR+  G N IV   T+LI+MY + G +     +F +MA KN +S
Sbjct: 203 --LGALDLGRSVHGFLLRNVSGLNVIVE--TSLIEMYLKCGXLYKGMCLFQKMAKKNKLS 258

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHG 314
           +S MI+  A +G   E L +F EM+ +   L P+ +  V VL AC+    +++G +  + 
Sbjct: 259 YSVMISGLAMHGYGREGLRIFTEMLEQG--LEPDDIVYVGVLNACSHAGLVQEGLQCFNR 316

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH--MDKRDVVSWNSLISSYGVH 369
             L  G++  +     +V +  R GK++    +     M+  DV+ W SL+S+  VH
Sbjct: 317 MKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVL-WRSLLSASKVH 372


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/648 (36%), Positives = 372/648 (57%), Gaps = 46/648 (7%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +++ L    +L   L++    +S    P  +T+  LL SC    +  +   +H+ +  
Sbjct: 52  NTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMK 111

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV-------------------- 148
            G + D +  T LI++Y+    ++DAR VFD + +R +                      
Sbjct: 112 LGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKV 171

Query: 149 -----------WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
                      WNA+          EE LEL++ M    T +R D  T   VL AC  S 
Sbjct: 172 FDXITERDVVSWNAMITGYVENCGYEEALELFKEM--MRTNVRPDEGTLVSVLSACAQSG 229

Query: 198 CGFSLLKHGKEIHASVL-RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                ++ G+EIH  V   HG+   + I+   I +Y++ G V  A  +F  ++ K+VVSW
Sbjct: 230 S----IELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSW 285

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + +I  Y    +  EAL LF+EM+       PN VTM+SVL ACA L A++ G+ IH YI
Sbjct: 286 NTLIGGYTHMNLYKEALLLFQEMLRSGES--PNDVTMLSVLPACAHLGAIDIGRWIHVYI 343

Query: 317 LRR--GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            +R  G+ +   + ++L+ MYA+CG +E    VF+ M  + + SWN++I  + +HG    
Sbjct: 344 DKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANA 403

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A  +F  M  +G+ P  I+ V +L ACSH+GL++ G+ +F+S+ +++ I P +EHY CM+
Sbjct: 404 AFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMI 463

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           DLLG A   +EA +II  + +EP   +W SLL +C++H N+ELAE  +++L E+EP N+G
Sbjct: 464 DLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSG 523

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
           +YVLL+++YA A  W++V R++ +L  +G++KVPG S IE+   ++ F+  D+ HPQ  +
Sbjct: 524 SYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSRE 583

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
           ++ +L  +   ++E G+VP T  VL +++ E KE  +  HSEKLA+AFGLI+T  G  + 
Sbjct: 584 IYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLT 643

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + KNLR+C +CH  TK ISK   +EI+ RD  RFHHFR+GVCSC DYW
Sbjct: 644 VVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 177/347 (51%), Gaps = 43/347 (12%)

Query: 102 VHSHLTDNGFDQDPFLVTKLIN---VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            H+ +   G     + ++KL+    V  HFD +  A  VF+  +   + +WN + R L  
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +      LE+Y RM     G   + +T+ ++LK+C  S       + G++IHA V++ G 
Sbjct: 61  SSDLVSPLEMYVRM--VSXGHVPNAYTFPFLLKSCAKSKT----FEEGRQIHAQVMKLGC 114

Query: 219 NGIVHIMTTLIDMYARFG--------------------CVMYAGF-----------VFSQ 247
               +  T+LI MYAR G                      +  G+           VF  
Sbjct: 115 ELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDX 174

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           +  ++VVSW+AMI  Y  N    EALELF+EM+    ++ P+  T+VSVL ACA   ++E
Sbjct: 175 ITERDVVSWNAMITGYVENCGYEEALELFKEMMRT--NVRPDEGTLVSVLSACAQSGSIE 232

Query: 308 QGKMIHGYI-LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
            G+ IH  +    G  S L +V+A + +Y++CG +E+   +F+ +  +DVVSWN+LI  Y
Sbjct: 233 LGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGY 292

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
                  +A+ +F+EM+  G SP+ ++ +SVL AC+H G ++ G+ +
Sbjct: 293 THMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWI 339



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 138/292 (47%), Gaps = 37/292 (12%)

Query: 210 HASVLRHGYNGIVHIMTTLIDM---YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           HA +++ G +   + ++ L+++      F  + YA  VF      N++ W+ M+   A +
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
                 LE++  M+   H   PN+ T   +L++CA     E+G+ IH  +++ G +    
Sbjct: 62  SDLVSPLEMYVRMVSXGH--VPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRY 119

Query: 327 VVSALVTMYARCGKLELGQ-------------C------------------VFDHMDKRD 355
             ++L++MYAR G+LE  +             C                  VFD + +RD
Sbjct: 120 AHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERD 179

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           VVSWN++I+ Y  +    +A+++FKEM+   V P   + VSVL AC+ +G +E G+ +  
Sbjct: 180 VVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHT 239

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
            +   H    S++     + L  +   +E A+ + E L  +     W +L+G
Sbjct: 240 LVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVS-WNTLIG 290


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/612 (38%), Positives = 367/612 (59%), Gaps = 35/612 (5%)

Query: 72  LSIEPNPTQHTYELLLLSCT--HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF- 128
           LS+ PN  +H +  LL + T   H+ L+ +L  H+     G D D ++   LIN Y+ F 
Sbjct: 104 LSVPPN--RHVFPSLLKASTLLKHHKLAHSL--HACTVRLGLDSDLYIANALINTYAKFH 159

Query: 129 --------------DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
                           +D  + VFD    R +  WN +       G   E L++ R M  
Sbjct: 160 NAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGK 219

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA- 233
            G  ++ D FT + +L            +  GKEIH   +R+G++G V I ++LIDMYA 
Sbjct: 220 NGK-LKPDSFTLSSILPIFAEHVD----VNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAK 274

Query: 234 --RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
             R  C + A ++  +   K+ +SW+++IA   +NG     L  FR M+ E  ++ P +V
Sbjct: 275 CNRLECSLRAFYILPR---KDAISWNSIIAGCVQNGEFDRGLGFFRRMLKE--NVKPMAV 329

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           +  SV+ ACA L AL  G+ +HG I+R G D    + S+LV MYA+CG +++ + VFD +
Sbjct: 330 SFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRI 389

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           DKRD+V+W ++I    +HG+   A+ +F+ M+  GV P  ++F++VL ACSHAGLV+EG 
Sbjct: 390 DKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGW 449

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR-IEPGPKVWGSLLGSCR 470
             F SM ++  I P +EHYA + DLLGRA +LEEA   I ++R ++P   VW  LL +CR
Sbjct: 450 RYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACR 509

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
            H +VELAE+   +L  ++  N G YVL++++Y+AA  W +  R++  +  +GL+K P  
Sbjct: 510 AHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPAC 569

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S IEV  ++++F++ D+ HP +++++  L  L  +M+++GYV  T  VL+D+D E K  +
Sbjct: 570 SWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEELKREL 629

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +  HSE+LA+A+G+I+T+ G TIR+ KN+R+C DCH+  KFI+K   +EI VRD +RFHH
Sbjct: 630 LHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRDNSRFHH 689

Query: 651 FRNGVCSCGDYW 662
           F+NG CSCGDYW
Sbjct: 690 FKNGSCSCGDYW 701



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 20/231 (8%)

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           +WS++I CY  + +   +   F  M   S  + PN     S+L+A   L   +    +H 
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSM--RSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHA 134

Query: 315 YILRRGLDSILPVVSALVTMYAR---CGK------------LELGQCVFDHMDKRDVVSW 359
             +R GLDS L + +AL+  YA+    GK            ++  + VFD M  RDVVSW
Sbjct: 135 CTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSW 194

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           N++I+ +  +G   +A+ + +EM  +G + P   +  S+L   +    V +GK +     
Sbjct: 195 NTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEI-HGYA 253

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
             +     V   + ++D+  + N+LE + +    L  +     W S++  C
Sbjct: 254 VRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAIS-WNSIIAGC 303


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/693 (36%), Positives = 385/693 (55%), Gaps = 73/693 (10%)

Query: 38  LNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHH 93
           L S   PT  S    + LI +L K     Q++ V S   +    P  H    L   C   
Sbjct: 73  LQSIPDPTIYSF---SSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAEL 129

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
           ++      +H     +G D D F+   + ++Y     + DAR VFD+   + +   +AL 
Sbjct: 130 SAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALL 189

Query: 154 RALTLAGRGEEVLELYRRMNGTG--------TGIRSD--------------------RFT 185
            A    G  EEV+ +   M  +G         GI S                      F 
Sbjct: 190 CAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFC 249

Query: 186 YTYVLKACVASSCGFS-LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV------ 238
              V  + V  S G S +L  G+ IH  V++ G      +++ +IDMY + G V      
Sbjct: 250 PDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISL 309

Query: 239 ------MYAGF----------------------VFSQMAVK-NVVSWSAMIACYARNGMA 269
                 M AG                       +F +  ++ NVVSW+++IA  A+NG  
Sbjct: 310 FNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKD 369

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EALELFREM  +   + PN VT+ S+L AC  +AAL  G+  HG+ +R  L   + V S
Sbjct: 370 IEALELFREM--QVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGS 427

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           AL+ MYA+CG++ L Q VF+ M  +++V WNSL++ + +HG   + + IF+ ++   + P
Sbjct: 428 ALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKP 487

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
             ISF S+L AC   GL +EG   F+ M +E+ I+P +EHY+CMV+LLGRA KL+EA  +
Sbjct: 488 DFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDL 547

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
           I+++  EP   VWG+LL SCR+  NV+LAE A+++LF LEP N G YVLL+++YAA  MW
Sbjct: 548 IKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMW 607

Query: 510 DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569
            EV  ++  +E+ GL+K PG S I+VK ++Y+ ++ D+ HPQ +Q+   +  +S EM++ 
Sbjct: 608 TEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKS 667

Query: 570 GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
           G+ P     L+D++ +E+E+++ GHSEKLAV FGL+NT  G  +++ KNLR+C DCH+  
Sbjct: 668 GHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVI 727

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KFIS +A +EI +RD NRFHHF++G+CSCGD+W
Sbjct: 728 KFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 191/438 (43%), Gaps = 76/438 (17%)

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
           H+ +  +G   D ++  KLI  YS+++  +DA  V       TIY +++L  ALT A   
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
            + + ++ RM     G+  D      + K C       S  K GK+IH      G +   
Sbjct: 98  TQSIGVFSRM--FSHGLIPDSHVLPNLFKVCAE----LSAFKVGKQIHCVSCVSGLDMDA 151

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE---- 278
            +  ++  MY R G +  A  VF +M+ K+VV+ SA++  YAR G   E + +  E    
Sbjct: 152 FVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESS 211

Query: 279 ---------------------------MIMESHDL--CPNSVTMVSVLQACAALAALEQG 309
                                      M  + H L  CP+ VT+ SVL +      L  G
Sbjct: 212 GIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMG 271

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGK-------------LELGQC---------- 346
           ++IHGY++++GL     V+SA++ MY + G              +E G C          
Sbjct: 272 RLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRN 331

Query: 347 --------VFDHMDKR----DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
                   +F+   ++    +VVSW S+I+    +G   +A+++F+EM   GV P+ ++ 
Sbjct: 332 GLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTI 391

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
            S+L AC +   +  G+       + H++  +V   + ++D+  +  ++   ++I+ ++ 
Sbjct: 392 PSMLPACGNIAALGHGRSTHGFAVRVHLL-DNVHVGSALIDMYAKCGRI-NLSQIVFNMM 449

Query: 455 IEPGPKVWGSLLGSCRIH 472
                  W SL+    +H
Sbjct: 450 PTKNLVCWNSLMNGFSMH 467



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 107/210 (50%), Gaps = 2/210 (0%)

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
           + HA +L+ G     +I   LI  Y+ + C   A  V   +    + S+S++I    +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
           +  +++ +F  M   SH L P+S  + ++ + CA L+A + GK IH      GLD    V
Sbjct: 96  LFTQSIGVFSRMF--SHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFV 153

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
             ++  MY RCG++   + VFD M  +DVV+ ++L+ +Y   G   + ++I  EM   G+
Sbjct: 154 QGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGI 213

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESM 417
             + +S+  +L   + +G  +E  ++F+ +
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKI 243


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/614 (38%), Positives = 359/614 (58%), Gaps = 45/614 (7%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+S        +AL +    LS   NP  +T+  +L +C+  ++L   L VH  +  
Sbjct: 106 NVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVK 165

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G D + F+   L+ +Y     + +AR V D+   R +  WN++      +G+ ++ LE+
Sbjct: 166 VGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEI 225

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            + M+                             L H     AS+             + 
Sbjct: 226 CKEMDSLN--------------------------LNHDAGTMASL-------------SP 246

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +  Y     V Y   +F +M  KN++SW+ MIA Y  N M  EA+ LF +M  E   + P
Sbjct: 247 VVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQM--EECGMKP 304

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           ++VT+ S+L AC  L+AL  G+ +H YI +  L   L + +AL+ MYA+CG LE  + VF
Sbjct: 305 DAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVF 364

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M  RDVVSW S++S+YG  G G  A+ +F +M+  G +P  I+FVSVL ACSH GL++
Sbjct: 365 DKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLD 424

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           +G+  F  M +++ I P +EH+ACMVDL GRA ++EEA   I+ + +EP  +VWG+LL +
Sbjct: 425 QGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSA 484

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CR+H  +++   A+  LF+L P  +G YVLL+++YA A MW +V  V+  ++  G++KVP
Sbjct: 485 CRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVP 544

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +E+  ++++F++ D++HPQ + ++  L  L  +MKE GY+PQT+  L+D++ E+KE
Sbjct: 545 GISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKE 604

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSEKLA+ F ++NT +G  IRITKNLR+C DCH   K ISK  ++ I+VRD NRF
Sbjct: 605 CHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRF 664

Query: 649 HHFRNGVCSCGDYW 662
           HHF NG+CSCGDYW
Sbjct: 665 HHFSNGICSCGDYW 678



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 178/373 (47%), Gaps = 25/373 (6%)

Query: 175 TGTGIRSDRFTY-TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT-LIDMY 232
           + T IR DR     +  +AC      +  +K   ++H+ ++ + +  I   +   L+  Y
Sbjct: 22  SSTRIRFDRLKVEVFSKEACEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAY 81

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           +  G    A ++F +   KNVV ++ MI  Y  N +  EAL +F+  +M S    P+  T
Sbjct: 82  SAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQ--VMLSCAFNPDHYT 139

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
              VL+AC+ L  L  G  +H  I++ GLD+ L + +ALV MY +CG L   + V D M 
Sbjct: 140 FPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMP 199

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL--VEEG 410
            RDVVSWNS+++ Y   G    A++I KEM    ++    +  S+     +  L  V+  
Sbjct: 200 YRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYI 259

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI---IEDLRIEPGPKVWGSLLG 467
             +FE M K+++I  +V     M+ +    +   EA  +   +E+  ++P      SLL 
Sbjct: 260 HNMFERMTKKNLISWNV-----MIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLP 314

Query: 468 SCRIHCNVELAERASKRLFE--LEPTNAGNYVLLADVYA-------AADMWDEVKRVKRL 518
           +C     + L  R  K + +  L P       LL D+YA       A D++D++ R++ +
Sbjct: 315 ACGDLSALFLGRRLHKYIEKGNLRPNLLLENALL-DMYAKCGCLEEARDVFDKM-RLRDV 372

Query: 519 LEARGLQKVPGRS 531
           +    +    GRS
Sbjct: 373 VSWTSMMSAYGRS 385


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/580 (39%), Positives = 352/580 (60%), Gaps = 25/580 (4%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD----------SVDDARHVFDKTRR 143
           N+L     +H+H+   GF  +P ++TK  +  S+ D          SV+DAR V+D    
Sbjct: 18  NTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDAR-VYDA--- 73

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
              ++++ + RA   + + +     Y  +   G GI  +++ + +VLKAC     G   L
Sbjct: 74  ---FLFSTIIRAYAESSQSKHNAIFYYNLM-LGYGISPNKYAFPFVLKACA----GLRDL 125

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYAR-FGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
             GK +H S+++ G++  + +  T++ MY    G + +A  +F +M   + V+W+AMI  
Sbjct: 126 NLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGG 185

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           YAR G +  A+ LFR+M +    +CP+ VTMVSVL AC  L ALE GK I  YI +  + 
Sbjct: 186 YARLGQSAGAVGLFRKMQIAG--VCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVL 243

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             + + +ALV M+A+CG ++    +F +M KR +VSW S+I    +HG G +A+ +F+EM
Sbjct: 244 KTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEM 303

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              G+ P  I+F+ +L ACSH+GLVE G+  F  M ++  I P +EHY CMVDLL RA  
Sbjct: 304 KASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGL 363

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           + EA + +E + IEP P +W +L+ +CR+H  ++L E  SK+L   EP +  NYVLL+++
Sbjct: 364 VTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNI 423

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           Y     W++  +++  +  +G+QKVPG + IE+  +++ F+  D  H Q+ ++  ++  +
Sbjct: 424 YGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEM 483

Query: 563 SAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLC 622
             EMK  GY P T  V  D+D E+KE  +  HSEKLA+AF L+NT  G  IRITKNLR+C
Sbjct: 484 GREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVC 543

Query: 623 EDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            DCHS +KFISK  N+EI++RD +RFHHFR+G CSCGD+W
Sbjct: 544 GDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 41/241 (17%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L +CT   +L     + S++      +   L   L+++++    VD A  +
Sbjct: 209 PDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGL 268

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F    +RTI  W ++   L + GRG E + L+  M    +G+  +   +  +L AC  S 
Sbjct: 269 FRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMK--ASGMVPEDIAFIGLLSACSHS- 325

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
               L++ G++  + + R                  +FG             V  +  + 
Sbjct: 326 ---GLVERGRQYFSEMTR------------------QFGI------------VPKIEHYG 352

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            M+   +R G+  EALE    M +E     PN +   +++ AC     L+ G+ I   ++
Sbjct: 353 CMVDLLSRAGLVTEALEFVERMPIE-----PNPIIWRTLISACRVHGELKLGESISKQLI 407

Query: 318 R 318
           R
Sbjct: 408 R 408


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/636 (38%), Positives = 372/636 (58%), Gaps = 17/636 (2%)

Query: 38  LNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHH 93
           L +  TP        N ++  L + G   +A+    D++++   P   T+   L +C+  
Sbjct: 225 LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 284

Query: 94  NSLSDALNVHSH-LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT--RRRTIYVWN 150
             L     +H++ + D+    + F+ + L+++Y+  + V  AR VFD      + + +WN
Sbjct: 285 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWN 344

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE-I 209
           A+      AG  EE L L+ RM     G      T   VL AC A S  F+    GKE +
Sbjct: 345 AMICGYAQAGMDEEALRLFARMEAE-AGFVPCETTMASVLPAC-ARSEAFA----GKEAV 398

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           H  V++ G  G   +   L+DMYAR G    A  +F+ + + +VVSW+ +I      G  
Sbjct: 399 HGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHV 458

Query: 270 FEALELFREMI-MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
            +A +L REM  +E   + PN++T++++L  CA LAA  +GK IHGY +R  LD+ + V 
Sbjct: 459 ADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVG 518

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-V 387
           SALV MYA+CG L L + VFD + +R+ ++WN LI +YG+HG GG+A  +F  M   G  
Sbjct: 519 SALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEA 578

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
            P+ ++F++ L ACSH+G+V+ G  LF +M ++H + P+ +  AC+VD+LGRA +L+EA 
Sbjct: 579 RPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAY 638

Query: 448 KIIEDLRI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
            ++  +   E     W ++LG+CR+H NV L E A +RL ELEP  A +YVLL ++Y+AA
Sbjct: 639 AMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAA 698

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
             W     V+  +  RG+ K PG S IEV   ++ F++ +  HP  E++HA +  L  EM
Sbjct: 699 GQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEM 758

Query: 567 KEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
             +GY P T  VL+D+D  +K  ++  HSEKLA+AFGL+  + G TIR+ KNLR+C DCH
Sbjct: 759 VARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCH 818

Query: 627 SFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              KF+SK   +EI++RDV RFHHFRNG CSCGDYW
Sbjct: 819 EAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 145/304 (47%), Gaps = 43/304 (14%)

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH-----IMTTLIDMYARFGCVMYAGFV 244
           L   + S+      +  + IHA+ LR    G++H     +   L+  YAR G +  A  V
Sbjct: 60  LPPAIKSAAALRDARSARAIHAAALR---RGLLHRPSPAVANALLTAYARCGRLAAALEV 116

Query: 245 FSQMA--VKNVVSWSAMIACYARNGMAFEALELFRE----------MIMESHDLCPNSVT 292
           F  ++    + VS++++I+          AL LFR           M+   H L   S T
Sbjct: 117 FGSISDSAHDAVSFNSLIS----------ALCLFRRWDHALAALRAMLAGGHPL--TSFT 164

Query: 293 MVSVLQAC----AALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARCGKLELGQC 346
           +VSVL+A     AA AA+  G+  H + L+ GL         +AL++MYAR G +   Q 
Sbjct: 165 LVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQR 224

Query: 347 VFDHM--DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           +F      + DVV+WN+++S     G   +A+Q   +M+  GV P  ++F S L ACS  
Sbjct: 225 LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 284

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV--W 462
            L++ G+ +   + K+  +  +    + +VD+     ++ +A ++  D+  + G ++  W
Sbjct: 285 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVF-DMVPDSGKQLGMW 343

Query: 463 GSLL 466
            +++
Sbjct: 344 NAMI 347


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/636 (38%), Positives = 372/636 (58%), Gaps = 17/636 (2%)

Query: 38  LNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHH 93
           L +  TP        N ++  L + G   +A+    D++++   P   T+   L +C+  
Sbjct: 225 LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 284

Query: 94  NSLSDALNVHSH-LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT--RRRTIYVWN 150
             L     +H++ + D+    + F+ + L+++Y+  + V  AR VFD      + + +WN
Sbjct: 285 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWN 344

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE-I 209
           A+      AG  EE L L+ RM     G      T   VL AC A S  F+    GKE +
Sbjct: 345 AMICGYAQAGMDEEALRLFARMEAE-AGFVPCETTMASVLPAC-ARSEAFA----GKEAV 398

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           H  V++ G  G   +   L+DMYAR G    A  +F+ + + +VVSW+ +I      G  
Sbjct: 399 HGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHV 458

Query: 270 FEALELFREMI-MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
            +A +L REM  +E   + PN++T++++L  CA LAA  +GK IHGY +R  LD+ + V 
Sbjct: 459 ADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVG 518

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-V 387
           SALV MYA+CG L L + VFD + +R+ ++WN LI +YG+HG GG+A  +F  M   G  
Sbjct: 519 SALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEA 578

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
            P+ ++F++ L ACSH+G+V+ G  LF +M ++H + P+ +  AC+VD+LGRA +L+EA 
Sbjct: 579 RPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAY 638

Query: 448 KIIEDLRI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
            ++  +   E     W ++LG+CR+H NV L E A +RL ELEP  A +YVLL ++Y+AA
Sbjct: 639 AMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAA 698

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
             W     V+  +  RG+ K PG S IEV   ++ F++ +  HP  E++HA +  L  EM
Sbjct: 699 GQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEM 758

Query: 567 KEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
             +GY P T  VL+D+D  +K  ++  HSEKLA+AFGL+  + G TIR+ KNLR+C DCH
Sbjct: 759 VARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCH 818

Query: 627 SFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              KF+SK   +EI++RDV RFHHFRNG CSCGDYW
Sbjct: 819 EAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 145/304 (47%), Gaps = 43/304 (14%)

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH-----IMTTLIDMYARFGCVMYAGFV 244
           L   + S+      +  + IHA+ LR    G++H     +   L+  YAR G +  A  V
Sbjct: 60  LPPAIKSAAALRDARSARAIHAAALR---RGLLHRPSPAVANALLTAYARCGRLAAALEV 116

Query: 245 FSQMA--VKNVVSWSAMIACYARNGMAFEALELFRE----------MIMESHDLCPNSVT 292
           F  ++    + VS++++I+          AL LFR           M+   H L   S T
Sbjct: 117 FGSISDSAHDAVSFNSLIS----------ALCLFRRWDHALAALRAMLAGGHPL--TSFT 164

Query: 293 MVSVLQAC----AALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARCGKLELGQC 346
           +VSVL+A     AA AA+  G+  H + L+ GL         +AL++MYAR G +   Q 
Sbjct: 165 LVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQR 224

Query: 347 VFDHM--DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           +F      + DVV+WN+++S     G   +A+Q   +M+  GV P  ++F S L ACS  
Sbjct: 225 LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 284

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV--W 462
            L++ G+ +   + K+  +  +    + +VD+     ++ +A ++  D+  + G ++  W
Sbjct: 285 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVF-DMVPDSGKQLGMW 343

Query: 463 GSLL 466
            +++
Sbjct: 344 NAMI 347


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/636 (38%), Positives = 372/636 (58%), Gaps = 17/636 (2%)

Query: 38  LNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHH 93
           L +  TP        N ++  L + G   +A+    D++++   P   T+   L +C+  
Sbjct: 227 LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 286

Query: 94  NSLSDALNVHSH-LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT--RRRTIYVWN 150
             L     +H++ + D+    + F+ + L+++Y+  + V  AR VFD      + + +WN
Sbjct: 287 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWN 346

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE-I 209
           A+      AG  EE L L+ RM     G      T   VL AC A S  F+    GKE +
Sbjct: 347 AMICGYAQAGMDEEALRLFARMEAE-AGFVPCETTMASVLPAC-ARSEAFA----GKEAV 400

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           H  V++ G  G   +   L+DMYAR G    A  +F+ + + +VVSW+ +I      G  
Sbjct: 401 HGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHV 460

Query: 270 FEALELFREMI-MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
            +A +L REM  +E   + PN++T++++L  CA LAA  +GK IHGY +R  LD+ + V 
Sbjct: 461 ADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVG 520

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-V 387
           SALV MYA+CG L L + VFD + +R+ ++WN LI +YG+HG GG+A  +F  M   G  
Sbjct: 521 SALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEA 580

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
            P+ ++F++ L ACSH+G+V+ G  LF +M ++H + P+ +  AC+VD+LGRA +L+EA 
Sbjct: 581 RPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAY 640

Query: 448 KIIEDLRI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
            ++  +   E     W ++LG+CR+H NV L E A +RL ELEP  A +YVLL ++Y+AA
Sbjct: 641 AMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAA 700

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
             W     V+  +  RG+ K PG S IEV   ++ F++ +  HP  E++HA +  L  EM
Sbjct: 701 GQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEM 760

Query: 567 KEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
             +GY P T  VL+D+D  +K  ++  HSEKLA+AFGL+  + G TIR+ KNLR+C DCH
Sbjct: 761 VARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCH 820

Query: 627 SFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              KF+SK   +EI++RDV RFHHFRNG CSCGDYW
Sbjct: 821 EAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 856



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 145/304 (47%), Gaps = 43/304 (14%)

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH-----IMTTLIDMYARFGCVMYAGFV 244
           L   + S+      +  + IHA+ LR    G++H     +   L+  YAR G +  A  V
Sbjct: 62  LPPAIKSAAALRDARSARAIHAAALR---RGLLHRPSPAVANALLTAYARCGRLAAALEV 118

Query: 245 FSQMA--VKNVVSWSAMIACYARNGMAFEALELFRE----------MIMESHDLCPNSVT 292
           F  ++    + VS++++I+          AL LFR           M+   H L   S T
Sbjct: 119 FGSISDSAHDAVSFNSLIS----------ALCLFRRWDHALAALRAMLAGGHPL--TSFT 166

Query: 293 MVSVLQAC----AALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARCGKLELGQC 346
           +VSVL+A     AA AA+  G+  H + L+ GL         +AL++MYAR G +   Q 
Sbjct: 167 LVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQR 226

Query: 347 VFDHM--DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           +F      + DVV+WN+++S     G   +A+Q   +M+  GV P  ++F S L ACS  
Sbjct: 227 LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 286

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV--W 462
            L++ G+ +   + K+  +  +    + +VD+     ++ +A ++  D+  + G ++  W
Sbjct: 287 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVF-DMVPDSGKQLGMW 345

Query: 463 GSLL 466
            +++
Sbjct: 346 NAMI 349


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/629 (38%), Positives = 366/629 (58%), Gaps = 18/629 (2%)

Query: 38  LNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL---DVLSIEP-NPTQHTYELLLLSCTHH 93
            N    PT+ +    N +I+    +   RQA+    ++ ++  +P + T+  L  SC   
Sbjct: 97  FNQIPNPTTFTC---NSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC--- 150

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
             L +   +H H T  GF  D ++   L+N+YS+   +  AR VFDK   +++  W  + 
Sbjct: 151 GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMI 210

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
            A        E ++L+RRM      ++ +  T   VL AC  S      L+  K++H  +
Sbjct: 211 GAYAQWDLPHEAIKLFRRMEIAS--VKPNEITLVNVLTACARSR----DLETAKQVHKYI 264

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
              G      + + L+D+Y + GC   A  +F++M  KN+  W+ MI  +  +    EAL
Sbjct: 265 DETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEAL 324

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
            LF EM +    +  + VTM S+L AC  L ALE GK +H YI +  ++  + + +ALV 
Sbjct: 325 SLFNEMQLSG--VKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVD 382

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MYA+CG +E    VF  M ++DV++W +LI    + G G KA+++F EM    V P  I+
Sbjct: 383 MYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAIT 442

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           FV VL ACSHAGLV EG   F SM  ++ I+PS+EHY CMVD+LGRA ++ EA  +I+++
Sbjct: 443 FVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNM 502

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
            + P   V   LL +CRIH N+ +AERA+++L EL+P N G YVLL+++Y++   W+  K
Sbjct: 503 PMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAK 562

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
           +++ L+  R ++K PG S IEV   ++ FV  D  HPQ  +++  L ++   +K  GYVP
Sbjct: 563 KMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVP 622

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
               VL+D+D +EKE  +  HSEKLA+AFGL++T+ G  IR+ KNLR+C DCHS  KFIS
Sbjct: 623 DKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFIS 682

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +  N+EI+VRD NRFHHF  G CSC D+W
Sbjct: 683 EVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 195/382 (51%), Gaps = 15/382 (3%)

Query: 87  LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD--SVDDARHVFDKTRRR 144
           LLS     ++S    +H+ +       DPF  +K++   +  D  S+  AR VF++    
Sbjct: 44  LLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNP 103

Query: 145 TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK 204
           T +  N++ R  T      + +  Y+ M     G+  DRFT+  + K+C        +L 
Sbjct: 104 TTFTCNSIIRGYTNKNLPRQAILFYQLM--MLQGLDPDRFTFPSLFKSC-------GVLC 154

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
            GK++H    + G+    +I  TL++MY+  GC++ A  VF +M  K+VVSW+ MI  YA
Sbjct: 155 EGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 214

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           +  +  EA++LFR   ME   + PN +T+V+VL ACA    LE  K +H YI   G+   
Sbjct: 215 QWDLPHEAIKLFRR--MEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFH 272

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
             + SAL+ +Y +CG   L + +F+ M ++++  WN +I+ +       +A+ +F EM  
Sbjct: 273 TVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQL 332

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            GV    ++  S+L AC+H G +E GK L   + KE  I   V     +VD+  +   +E
Sbjct: 333 SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEK-IEVDVALGTALVDMYAKCGSIE 391

Query: 445 EAAKIIEDLRIEPGPKVWGSLL 466
            A ++ +++  E     W +L+
Sbjct: 392 SAMRVFQEMP-EKDVMTWTALI 412



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 98/246 (39%), Gaps = 48/246 (19%)

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA--RCGKLELGQCVFDHMDKR 354
           L+ C  ++ L+Q   IH  +LR  L       S +V   A    G L   + VF+ +   
Sbjct: 47  LEKCTTMSQLKQ---IHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNP 103

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML- 413
              + NS+I  Y       +AI  ++ M+  G+ P   +F S+  +C   G++ EGK L 
Sbjct: 104 TTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLH 160

Query: 414 ---------------------------FESMRK--EHMIRPSVEHYACMVDLLGRANKLE 444
                                        S RK  + M+  SV  +A M+    + +   
Sbjct: 161 CHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPH 220

Query: 445 EAAKIIEDLRI---EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA- 500
           EA K+   + I   +P      ++L +C    ++E A++  K + E   T  G + +L  
Sbjct: 221 EAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDE---TGIGFHTVLTS 277

Query: 501 ---DVY 503
              DVY
Sbjct: 278 ALMDVY 283


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/581 (39%), Positives = 356/581 (61%), Gaps = 16/581 (2%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDARHVFDKTRR 143
           LL  C++      +   H+ +   G   D F  + L+     S + S+D A  +F +   
Sbjct: 37  LLKKCSNMEEFKQS---HARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDE 93

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
              + +N + R        EE L  Y+ M     G++ D FTY  +LKAC         +
Sbjct: 94  LGSFQFNTMMRGHVKDMNTEEALITYKEM--AERGVKPDNFTYPTLLKACAR----LPAV 147

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
           + G ++HA +L+ G    V +  +LI MY + G +     VF QM  ++V SWSA+I  +
Sbjct: 148 EEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAH 207

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GL 321
           A  GM  + L L  +M  E +     S+ +VSVL AC  L AL+ G+ +HG++LR   GL
Sbjct: 208 ASLGMWSDCLRLLGDMSNEGYWRAEESI-LVSVLSACTHLGALDLGRSVHGFLLRNVSGL 266

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           + I  V ++L+ MY +CG L  G C+F  M K++ +S++ +IS   +HGYG + ++IF E
Sbjct: 267 NVI--VETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTE 324

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M+  G+ P  I +V VL ACSHAGLV+EG   F  M+ EH I P+++HY CMVDL+GRA 
Sbjct: 325 MLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAG 384

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
           K++EA ++I+ + +EP   +W SLL + ++H N++  E A+K+LF+L+   A +YV+L++
Sbjct: 385 KIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSN 444

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YA A  W++V + +  + ++GL + PG S +EVKRKM+ FVS D  HPQ E ++ +L  
Sbjct: 445 MYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQ 504

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           +  ++K +GY P T  VL D+D EEK++ + GHS+KLA+A+ LI+TS+G  IRI +NLR+
Sbjct: 505 MEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRM 564

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCH++TK IS   ++EI VRD +RFHHF++G CSC DYW
Sbjct: 565 CNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 164/347 (47%), Gaps = 23/347 (6%)

Query: 47  LSSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNV 102
           L S   N +++   K  N  +AL    ++      P   TY  LL +C    ++ + + V
Sbjct: 94  LGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQV 153

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
           H+H+   G + D F+   LI++Y     +     VF++   R++  W+AL  A    G  
Sbjct: 154 HAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMW 213

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH--GYNG 220
            + L L   M+  G   R++      VL AC         L  G+ +H  +LR+  G N 
Sbjct: 214 SDCLRLLGDMSNEGY-WRAEESILVSVLSACTH----LGALDLGRSVHGFLLRNVSGLNV 268

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
           IV   T+LI+MY + G +     +F +MA KN +S+S MI+  A +G   E L +F EM+
Sbjct: 269 IVE--TSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEML 326

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCG 339
            +   L P+ +  V VL AC+    +++G +  +   L  G++  +     +V +  R G
Sbjct: 327 EQG--LEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAG 384

Query: 340 KLELGQCVFDH--MDKRDVVSWNSLISSYGVHG--YGGK--AIQIFK 380
           K++    +     M+  DV+ W SL+S+  VH     G+  A Q+FK
Sbjct: 385 KIDEALELIKSMPMEPNDVL-WRSLLSASKVHNNLQAGEIAAKQLFK 430


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/569 (40%), Positives = 351/569 (61%), Gaps = 14/569 (2%)

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           AL +H +   +G D++ F+   LI+VY     +++A+ VF     R +  WN++      
Sbjct: 188 ALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQ 247

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G+    L++++ M G+G  +  D  T   +  A      G    +  K +H  V+R G+
Sbjct: 248 RGQTAAALKMFQGMRGSG--VSPDVLTLVSLASAIAQGGDG----RSAKSLHCYVMRRGW 301

Query: 219 NGIVHIM--TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
           + +  I+    ++DMYA+   +  A  +F  M V++ VSW+ +I  Y +NG+A EA+E +
Sbjct: 302 D-VDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERY 360

Query: 277 REMIMESHD-LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
             M  + H+ L     T VSVL A + L AL+QG  +H   ++ GL+  + V + L+ +Y
Sbjct: 361 GHM--QKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLY 418

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           A+CGKL     +F+ M +R    WN++IS  GVHG+G +A+ +F  M   G+ P  ++FV
Sbjct: 419 AKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFV 478

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
           S+L ACSHAGLV++G+  F+ M+  + I P  +HYACM D+LGRA +L+EA   I+++ I
Sbjct: 479 SLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPI 538

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
           +P   VWG+LLG+CRIH NVE+ + AS+ LFEL+P N G YVL++++YA    WD V  V
Sbjct: 539 KPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEV 598

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVD--EFHPQFEQLHALLINLSAEMKEKGYVP 573
           + L+  + LQK PG S IEVKR +  F S +  E HPQ E++ A L +L A+++  GYV 
Sbjct: 599 RSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVS 658

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
               VL D++ +EKE I+  HSE+LA+AFG+INT     + I KNLR+C DCH+ TK+IS
Sbjct: 659 DYSFVLQDVEDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYIS 718

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +   +EI+VRD NRFHHF++G CSCGD+W
Sbjct: 719 QITEREIIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 182/360 (50%), Gaps = 14/360 (3%)

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           F    L++ Y  F  + +A  VFD+   R +  WNA+   L    R  E + L+ RM   
Sbjct: 104 FTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRM--V 161

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
           G G+  D  T + VL  CV    G  +L     +H   ++HG +  + +   LID+Y + 
Sbjct: 162 GEGVAGDTVTVSSVLPMCVL--LGDQVL--ALVMHVYAVKHGLDKELFVCNALIDVYGKL 217

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G +  A  VF  M  +++V+W+++I+   + G    AL++F+   M    + P+ +T+VS
Sbjct: 218 GMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQG--MRGSGVSPDVLTLVS 275

Query: 296 VLQACAALAALEQGKMIHGYILRRGLD-SILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           +  A A        K +H Y++RRG D   +   +A+V MYA+   +E  Q +FD M  +
Sbjct: 276 LASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQ 335

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKML 413
           D VSWN+LI+ Y  +G   +A++ +  M  H G+     +FVSVL A SH G +++G M 
Sbjct: 336 DSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQG-MR 394

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIH 472
             ++  +  +   V    C++DL  +  KL EA  + E + R   GP  W +++    +H
Sbjct: 395 MHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGP--WNAIISGLGVH 452



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 159/319 (49%), Gaps = 13/319 (4%)

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
           N L  A + A        L R +       R D FT+  +++A  +++          ++
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASA-------AQL 89

Query: 210 HASVLRHGY-NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           HA  LR G     V    +L+  Y RFG +  A  VF +M+ ++V +W+AM++   RN  
Sbjct: 90  HACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNAR 149

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
           A EA+ LF  M+ E   +  ++VT+ SVL  C  L       ++H Y ++ GLD  L V 
Sbjct: 150 AAEAVGLFGRMVGEG--VAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVC 207

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           +AL+ +Y + G LE  QCVF  M+ RD+V+WNS+IS     G    A+++F+ M   GVS
Sbjct: 208 NALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVS 267

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
           P  ++ VS+  A +  G     K L    MR+   +   +   A +VD+  + + +E A 
Sbjct: 268 PDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNA-IVDMYAKLSNIEAAQ 326

Query: 448 KIIEDLRIEPGPKVWGSLL 466
           ++ + + ++     W +L+
Sbjct: 327 RMFDSMPVQDSVS-WNTLI 344



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 46/265 (17%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
           Q T+  +L + +H  +L   + +H+     G + D ++ T LI++Y+    + +A  +F+
Sbjct: 373 QGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFE 432

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           K  RR+   WNA+   L + G G E L L+ RM     GI+ D  T+  +L AC      
Sbjct: 433 KMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQ--QEGIKPDHVTFVSLLAACS----- 485

Query: 200 FSLLKHGKEIHASVLRHG--YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                     HA ++  G  +  ++ +   ++ +   + C                    
Sbjct: 486 ----------HAGLVDQGRSFFDVMQVTYDIVPIAKHYAC-------------------- 515

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            M     R G   EA    + M ++     P+S    ++L AC     +E GK+    + 
Sbjct: 516 -MADMLGRAGQLDEAFNFIQNMPIK-----PDSAVWGALLGACRIHGNVEMGKVASQNLF 569

Query: 318 RRGLDSILPVVSALVTMYARCGKLE 342
               +++   V  +  MYA+ GK +
Sbjct: 570 ELDPENVGYYV-LMSNMYAKVGKWD 593


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/674 (37%), Positives = 380/674 (56%), Gaps = 50/674 (7%)

Query: 27  PKPSSVCCCVSLNS--STTPTSLSSRNKNELIQSLCKQGNLRQALDV-LSIEPNP---TQ 80
           P PS++   +SL S     PT  S    N+L++   +       L + L +  N     +
Sbjct: 60  PSPSALDYALSLFSHIPNPPTRFS----NQLLRQFSRGPTPENTLSLYLHLRRNGFPLDR 115

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGF-DQDPFLVTKLINVYSHFDSVDDARHVFD 139
            ++  LL + +  ++L+  L +H   +  GF   DPF+ + LI +Y+    + DAR +FD
Sbjct: 116 FSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFD 175

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           K   R +  WN +    +     + VL+LY  M  +GT    D      VL AC  +   
Sbjct: 176 KMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGT--EPDAIILCTVLSACAHAGN- 232

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA-------------------------- 233
              L +GK IH  +  +G+    HI T+L++MYA                          
Sbjct: 233 ---LSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAM 289

Query: 234 -----RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
                + G V  A F+F +M  K++V WSAMI+ YA +    EAL+LF EM  +   + P
Sbjct: 290 LSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEM--QRRRIVP 347

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + +TM+SV+ ACA + AL Q K IH Y  + G    LP+ +AL+ MYA+CG L   + VF
Sbjct: 348 DQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVF 407

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           ++M +++V+SW+S+I+++ +HG    AI +F  M    + P+ ++F+ VL ACSHAGLVE
Sbjct: 408 ENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVE 467

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG+  F SM  EH I P  EHY CMVDL  RAN L +A ++IE +   P   +WGSL+ +
Sbjct: 468 EGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSA 527

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C+ H  +EL E A+ RL ELEP + G  V+L+++YA    WD+V  V++L++ +G+ K  
Sbjct: 528 CQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEK 587

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
             SRIEV  +++ F+  D +H Q ++++  L  + +++K  GY P T  +L DL+ EEK+
Sbjct: 588 ACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKK 647

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
            +VL HSEKLA+ +GLI   K   IRI KNLR+CEDCHSF K +SK    EI++RD  RF
Sbjct: 648 EVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRF 707

Query: 649 HHFRNGVCSCGDYW 662
           HHF  G+CSC DYW
Sbjct: 708 HHFNGGICSCRDYW 721



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 120/257 (46%), Gaps = 9/257 (3%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF-----GCVMYAGFVFSQMAVKNVVSWS 257
           L+H K+IHA +LR   +    ++  L+             + YA  +FS +        +
Sbjct: 25  LRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPNPPTRFSN 84

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            ++  ++R       L L+  +      L  +  +   +L+A + L+AL  G  IHG   
Sbjct: 85  QLLRQFSRGPTPENTLSLYLHLRRNGFPL--DRFSFPPLLKAVSKLSALNLGLEIHGLAS 142

Query: 318 RRGLDSILPVV-SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           + G     P + SAL+ MYA CG++   + +FD M  RDVV+WN +I  Y  + +    +
Sbjct: 143 KFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVL 202

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           ++++EM   G  P  I   +VL AC+HAG +  GK + + + K++  R        +V++
Sbjct: 203 KLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFI-KDNGFRVGSHIQTSLVNM 261

Query: 437 LGRANKLEEAAKIIEDL 453
                 +  A ++ + L
Sbjct: 262 YANCGAMHLAREVYDQL 278


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 258/655 (39%), Positives = 358/655 (54%), Gaps = 71/655 (10%)

Query: 72  LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV 131
           +S  P+P  H     L SC     L+ AL  H+    +G  +DPF+ + L++ Y    + 
Sbjct: 14  VSFPPDP--HLLPSALKSCPAQ-PLARAL--HAAAVVSGLAEDPFVASSLLHSYIRLGAT 68

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG--------TGIRSDR 183
             AR VFD+   + +  W+AL    +  G  E    L  +M   G         G+ S  
Sbjct: 69  GAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGL 128

Query: 184 FTYTYVLKACVA---------------SSCGFSLLKH------GKEIHASVLRHGYNGIV 222
                 L A  A                SC  S +        GK++H  V++ G     
Sbjct: 129 NRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDA 188

Query: 223 HIMTTLIDMYARFG-------------------C------------VMYAGFVFSQMAVK 251
            ++T LIDMY + G                   C            V  A  +F +   +
Sbjct: 189 CVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICR 248

Query: 252 ----NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
               NVVSW++++AC  +NG   EA++LFR   M+S  + PNSVT+  VL A A +AAL 
Sbjct: 249 GVELNVVSWTSIVACCVQNGRDLEAVDLFR--TMQSIGVEPNSVTIPCVLPAFANVAALM 306

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+  H + LR+G    + V SALV MYA+CGK    + +FD M  R+VVSWN++I  Y 
Sbjct: 307 HGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYA 366

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           +HG    A+Q+F  M      P  ++F  VLGACS AGL EEG+  F  M++ H I P +
Sbjct: 367 MHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRM 426

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           EHYACMV LLGR+ KL+EA  +I ++  EP   +WGSLLGSCR++ NV LAE A+++LF+
Sbjct: 427 EHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQ 486

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           LEP NAGNYVLL+++YA+  MWD V RV+  ++  GL+K  G S IE+K K++  ++ D 
Sbjct: 487 LEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDN 546

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
            HP    +   L  L+ EM   G+ P    VL+D++ +EK+ I+  HSEKLAVA GLI+T
Sbjct: 547 SHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLIST 606

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             G  +R+ KNLR+C DCH   KFIS F  +EI VRD NRFHHF++G CSCGDYW
Sbjct: 607 RPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 94/237 (39%), Gaps = 43/237 (18%)

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
           +L + +  + +EPN    T   +L +  +  +L    + H      GF  D ++ + L++
Sbjct: 275 DLFRTMQSIGVEPNSV--TIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVD 332

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +Y+       AR +FD    R +  WNA+     + G     ++L+  M       + D 
Sbjct: 333 MYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQ--KPDL 390

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
            T+T VL AC  +     L + G+  + + ++ G     H ++  ++ YA          
Sbjct: 391 VTFTCVLGACSQA----GLTEEGRR-YFNEMQQG-----HGISPRMEHYA---------- 430

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
                          M+    R+G   EA +L  EM  E     P+S    S+L +C
Sbjct: 431 --------------CMVTLLGRSGKLDEAYDLINEMPFE-----PDSCIWGSLLGSC 468


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/618 (37%), Positives = 361/618 (58%), Gaps = 41/618 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL SC    + ++   +H  +   GFD D ++ T LI++Y     ++DA  V
Sbjct: 62  PNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKV 121

Query: 138 FDKTRRRTIYV-------------------------------WNALFRALTLAGRGEEVL 166
           FD++  R +                                 WNA+       G  +E L
Sbjct: 122 FDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEAL 181

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL+  M      +R D  TY  VL AC  S      ++ G+++H+ V  HG++  + I+ 
Sbjct: 182 ELFEEM--MKMNVRPDESTYVTVLSACAHSGS----IELGRQVHSWVDDHGFDSNLKIVN 235

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LID+Y++ G V  A  +F  ++ K+V+SW+ +I  Y    +  EAL LF+EM+      
Sbjct: 236 ALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-- 293

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELG 344
            PN VTM+SVL ACA L A++ G+ IH YI +R  G+ +   + ++L+ MYA+CG +E  
Sbjct: 294 TPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 353

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
             VF+ M  + + SWN++I  + +HG    +  +F  M   G+ P  I+FV +L ACSH+
Sbjct: 354 HQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHS 413

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+++ G+ +F SM +++ + P +EHY CM+DLLG +   +EA ++I  + +EP   +W S
Sbjct: 414 GMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 473

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +C++H NVELAE  ++ L ++EP N  +Y+LL+++YA+A  W++V R++ LL  + +
Sbjct: 474 LLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCM 533

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +KVPG S IEV   ++ FV  D+FHPQ  +++ +L  +   ++E G+VP T  VL +++ 
Sbjct: 534 KKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 593

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           E KE  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH  TK +SK   +EI+ RD
Sbjct: 594 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARD 653

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHFR+GVCSC DYW
Sbjct: 654 RTRFHHFRDGVCSCNDYW 671



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 190/378 (50%), Gaps = 41/378 (10%)

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
           HFD +  A  VF+  +     +WN + R   L+      L LY  M     G+  + +T+
Sbjct: 10  HFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCM--VSLGLLPNSYTF 67

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM--------------- 231
            ++LK+C  S         G++IH  VL+ G++  +++ T+LI M               
Sbjct: 68  PFLLKSCAKSKT----FTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFD 123

Query: 232 ----------------YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
                           YA  G +  A  +F ++ VK+VVSW+AMI+ YA  G   EALEL
Sbjct: 124 RSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALEL 183

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F EM+    ++ P+  T V+VL ACA   ++E G+ +H ++   G DS L +V+AL+ +Y
Sbjct: 184 FEEMM--KMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLY 241

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ++CG++E    +F  +  +DV+SWN+LI  Y       +A+ +F+EM+  G +P+ ++ +
Sbjct: 242 SKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTML 301

Query: 396 SVLGACSHAGLVEEGKMLFESMRKE-HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           SVL AC+H G ++ G+ +   + K    +  +      ++D+  +   +E A ++   + 
Sbjct: 302 SVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM- 360

Query: 455 IEPGPKVWGSLLGSCRIH 472
           +      W +++    +H
Sbjct: 361 LHKSLSSWNAMIFGFAMH 378



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 177/403 (43%), Gaps = 49/403 (12%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G  ++AL++    + +   P + TY  +L +C H  S+     VHS + D
Sbjct: 165 NAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDD 224

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GFD +  +V  LI++YS    V+ A  +F     + +  WN L    T     +E L L
Sbjct: 225 HGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLL 284

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH--GYNGIVHIMT 226
           ++ M  +G     +  T   VL AC         +  G+ IH  + +   G      + T
Sbjct: 285 FQEMLRSGE--TPNDVTMLSVLPACAH----LGAIDIGRWIHVYIDKRLKGVTNASSLRT 338

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +LIDMYA+ G +  A  VF+ M  K++ SW+AMI  +A +G A  + +LF    M    +
Sbjct: 339 SLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSR--MRKIGI 396

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+ +T V +L AC+    L+ G+    +I R           ++   Y    KLE   C
Sbjct: 397 EPDDITFVGLLSACSHSGMLDLGR----HIFR-----------SMTQDYKMTPKLEHYGC 441

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           + D +               G  G   +A ++   M    + P  + + S+L AC   G 
Sbjct: 442 MIDLL---------------GHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACKMHGN 483

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
           VE  +   +++ K     PS   Y  + ++   A + E+ A+I
Sbjct: 484 VELAESFAQNLIKIEPENPS--SYILLSNIYASAGRWEDVARI 524


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/636 (38%), Positives = 372/636 (58%), Gaps = 17/636 (2%)

Query: 38  LNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHH 93
           L +  TP        N ++  L + G   +A+    D++++   P   T+   L +C+  
Sbjct: 73  LFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL 132

Query: 94  NSLSDALNVHSH-LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT--RRRTIYVWN 150
             L     +H++ + D+    + F+ + L+++Y+  + V  AR VFD      + + +WN
Sbjct: 133 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWN 192

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE-I 209
           A+      AG  EE L L+ RM     G      T   VL AC A S  F+    GKE +
Sbjct: 193 AMICGYAQAGMDEEALRLFARMEAE-AGFVPCETTMASVLPAC-ARSEAFA----GKEAV 246

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           H  V++ G  G   +   L+DMYAR G    A  +F+ + + +VVSW+ +I      G  
Sbjct: 247 HGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHV 306

Query: 270 FEALELFREMI-MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
            +A +L REM  +E   + PN++T++++L  CA LAA  +GK IHGY +R  LD+ + V 
Sbjct: 307 ADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVG 366

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-V 387
           SALV MYA+CG L L + VFD + +R+ ++WN LI +YG+HG GG+A  +F  M   G  
Sbjct: 367 SALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEA 426

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
            P+ ++F++ L ACSH+G+V+ G  LF +M ++H + P+ +  AC+VD+LGRA +L+EA 
Sbjct: 427 RPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAY 486

Query: 448 KIIEDLRI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
            ++  +   E     W ++LG+CR+H NV L E A +RL ELEP  A +YVLL ++Y+AA
Sbjct: 487 AMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAA 546

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
             W     V+  +  RG+ K PG S IEV   ++ F++ +  HP  E++HA +  L  EM
Sbjct: 547 GQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEM 606

Query: 567 KEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
             +GY P T  VL+D+D  +K  ++  HSEKLA+AFGL+  + G TIR+ KNLR+C DCH
Sbjct: 607 VARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCH 666

Query: 627 SFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              KF+SK   +EI++RDV RFHHFRNG CSCGDYW
Sbjct: 667 EAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 702



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 152/317 (47%), Gaps = 18/317 (5%)

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH-----IMTTLIDMYARFGCV 238
           FT   VL+A        + ++ G+E HA  L+   NG++H         L+ MYAR G V
Sbjct: 11  FTLVSVLRAVSHLPAAAAAVRLGREAHAFALK---NGLLHGHQRFAFNALLSMYARLGLV 67

Query: 239 MYAGFVFSQM--AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
             A  +F+       +VV+W+ M++   ++GM  EA++   +M+  +  + P+ VT  S 
Sbjct: 68  ADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMV--ALGVRPDGVTFASA 125

Query: 297 LQACAALAALEQGKMIHGYILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHM--DK 353
           L AC+ L  L+ G+ +H Y+++   L +   V SALV MYA   ++   + VFD +    
Sbjct: 126 LPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSG 185

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEM-IYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
           + +  WN++I  Y   G   +A+++F  M    G  P   +  SVL AC+ +      + 
Sbjct: 186 KQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEA 245

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           +   + K  M        A M D+  R  K + A +I   + + P    W +L+  C + 
Sbjct: 246 VHGYVVKRGMAGNRFVQNALM-DMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQ 303

Query: 473 CNVELAERASKRLFELE 489
            +V  A + ++ + +LE
Sbjct: 304 GHVADAFQLAREMQQLE 320



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 13/198 (6%)

Query: 279 MIMESHDLCPNSVTMVSVLQAC----AALAALEQGKMIHGYILRRGL--DSILPVVSALV 332
           M+   H L   S T+VSVL+A     AA AA+  G+  H + L+ GL         +AL+
Sbjct: 1   MLAGGHPL--TSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALL 58

Query: 333 TMYARCGKLELGQCVFDHM--DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           +MYAR G +   Q +F      + DVV+WN+++S     G   +A+Q   +M+  GV P 
Sbjct: 59  SMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPD 118

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
            ++F S L ACS   L++ G+ +   + K+  +  +    + +VD+     ++ +A ++ 
Sbjct: 119 GVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVF 178

Query: 451 EDLRIEPGPKV--WGSLL 466
            D+  + G ++  W +++
Sbjct: 179 -DMVPDSGKQLGMWNAMI 195


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/675 (37%), Positives = 381/675 (56%), Gaps = 57/675 (8%)

Query: 21  SIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELI--QSLCKQGNLRQALDVLSIEPNP 78
           S+ +L PKP +  C    N      S S   +  L+  + +  QG    A+D  S  P  
Sbjct: 77  SVFNLIPKPETHLC----NRFLRELSRSEEPEKTLLVYERMRTQG---LAVDRFSFPP-- 127

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
                  LL + +   SL + L +H      GFD DPF+ T L+ +Y+    + +AR +F
Sbjct: 128 -------LLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMF 180

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           DK   R +  W+ +      +G   + L L+  M      +  D    + VL AC  +  
Sbjct: 181 DKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYN--VEPDEMMLSTVLSACGRAGN 238

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV-------------------- 238
               L +GK IH  ++ +      H+ + L+ MYA  G +                    
Sbjct: 239 ----LSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTA 294

Query: 239 MYAGF-----------VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           M  G+           VF+QM  K++V WSAMI+ YA +    EAL LF EM  +S  + 
Sbjct: 295 MVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEM--QSLGIK 352

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+ VTM+SV+ ACA L AL+Q K IH ++ + G    LP+ +AL+ MYA+CG LE  + +
Sbjct: 353 PDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRI 412

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           FD M +++V+SW  +IS++ +HG  G A++ F +M    + P+ I+FV VL ACSHAGLV
Sbjct: 413 FDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLV 472

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           EEG+ +F SM  EH I P   HY CMVDL GRAN L EA +++E + + P   +WGSL+ 
Sbjct: 473 EEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMA 532

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           +CR+H  +EL E A+KRL EL+P + G +V L+++YA A  W++V +V++L++ +G+ K 
Sbjct: 533 ACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKE 592

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
            G SR E+  +++ F+  D  H   ++++  L  + +++K  GY P T  +L DL+ EEK
Sbjct: 593 RGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEK 652

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
           + +VL HSEKLA+ +GL+    G  IRI KNLR+CEDCH+F K  SK   +EI+VRD  R
Sbjct: 653 KEVVLWHSEKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTR 712

Query: 648 FHHFRNGVCSCGDYW 662
           FHH+++GVCSC DYW
Sbjct: 713 FHHYKDGVCSCKDYW 727



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 3/222 (1%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTL-IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
           L H K++HA +LR   +    ++  L I   A    + YA  VF+ +        +  + 
Sbjct: 36  LTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLR 95

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
             +R+    + L ++  M   +  L  +  +   +L+A + + +L +G  IHG   + G 
Sbjct: 96  ELSRSEEPEKTLLVYERM--RTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGF 153

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           DS   V + LV MYA CG++   + +FD M  RDVV+W+ +I  Y   G    A+ +F+E
Sbjct: 154 DSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEE 213

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           M  + V P  +   +VL AC  AG +  GKM+ + + + +++
Sbjct: 214 MKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIV 255


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/618 (37%), Positives = 363/618 (58%), Gaps = 41/618 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL SC    +  +   +H H+   G++ D ++ T LI++Y+    ++DA  V
Sbjct: 64  PNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKV 123

Query: 138 FDKTRRRTIYV-------------------------------WNALFRALTLAGRGEEVL 166
           FD++  R +                                 WNA+       G  +E L
Sbjct: 124 FDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEAL 183

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++ M    T +R D  T   VL AC  S      ++ G+++H+ +  HG+   + I+ 
Sbjct: 184 ELFKEM--MKTNVRPDEGTMVTVLSACAQSRS----VELGRQVHSWIDDHGFGSNLKIVN 237

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LID+Y++ G V  A  +F  ++ K+VVSW+ +I  Y    +  EAL LF+EM+      
Sbjct: 238 ALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES- 296

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD--SILPVVSALVTMYARCGKLELG 344
            PN VT+VS+L ACA L A++ G+ IH YI ++  D  +   + ++L+ MYA+CG +E  
Sbjct: 297 -PNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAA 355

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
             VF+ M  + + SWN++I  + +HG       +F  M  +G+ P  I+FV +L ACSH+
Sbjct: 356 HQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHS 415

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G ++ G+ +F+SM +++ I P +EHY CM+DLLG +   +EA ++I+ + +EP   +W S
Sbjct: 416 GKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCS 475

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +CR H N+ELAE  ++ L ++EP N G+YVLL+++YA A  WDEV +V+ LL  +G+
Sbjct: 476 LLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGM 535

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +KVPG S IE+  +++ F+  D+ HP+  +++ +L  + A ++E G+VP T  VL +++ 
Sbjct: 536 KKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEE 595

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           E KE  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH  TK +SK   +EI+ RD
Sbjct: 596 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARD 655

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHFR+GVCSC D+W
Sbjct: 656 RTRFHHFRDGVCSCNDFW 673



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 187/361 (51%), Gaps = 44/361 (12%)

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
           HFD    A  VF   +     +WN + R   L+      L+LY  M     G+  + +T+
Sbjct: 12  HFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVM--ISLGLLPNSYTF 69

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG---------- 236
            ++LK+C  S       + G++IH  VL+ GY   +++ T+LI MYA+ G          
Sbjct: 70  PFLLKSCAKSKA----FEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFD 125

Query: 237 ------CVMYAGFV---------------FSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
                  V Y   +               F ++ VK+VVSW+AMI+ YA  G   EALEL
Sbjct: 126 RSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALEL 185

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F+EM+    ++ P+  TMV+VL ACA   ++E G+ +H +I   G  S L +V+AL+ +Y
Sbjct: 186 FKEMM--KTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLY 243

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ++CG++E    +F+ +  +DVVSWN+LI  Y       +A+ +F+EM+  G SP+ ++ V
Sbjct: 244 SKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIV 303

Query: 396 SVLGACSHAGLVEEGKML---FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           S+L AC+H G ++ G+ +    +   K+    PS+     ++D+  +   +E A ++   
Sbjct: 304 SILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQVFNS 361

Query: 453 L 453
           +
Sbjct: 362 M 362



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 133/264 (50%), Gaps = 35/264 (13%)

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
           F    YA  VF+ +   N + W+ M+  YA +     AL+L+  ++M S  L PNS T  
Sbjct: 13  FDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLY--VVMISLGLLPNSYTFP 70

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE------------ 342
            +L++CA   A E+G+ IHG++L+ G +  L V ++L++MYA+ G+LE            
Sbjct: 71  FLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHR 130

Query: 343 -------------------LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
                                Q +FD +  +DVVSWN++IS Y   G   +A+++FKEM+
Sbjct: 131 DVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMM 190

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
              V P   + V+VL AC+ +  VE G+ +  S   +H    +++    ++DL  +  ++
Sbjct: 191 KTNVRPDEGTMVTVLSACAQSRSVELGRQV-HSWIDDHGFGSNLKIVNALIDLYSKCGQV 249

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLG 467
           E A  + E L  +     W +L+G
Sbjct: 250 ETACGLFEGLSCKDVVS-WNTLIG 272



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 171/403 (42%), Gaps = 49/403 (12%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G+ ++AL++    +     P + T   +L +C    S+     VHS + D
Sbjct: 167 NAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDD 226

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GF  +  +V  LI++YS    V+ A  +F+    + +  WN L    T     +E L L
Sbjct: 227 HGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLL 286

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR--HGYNGIVHIMT 226
           ++ M  +G     +  T   +L AC         +  G+ IH  + +          + T
Sbjct: 287 FQEMLRSGES--PNDVTIVSILPACAH----LGAIDIGRWIHVYIDKKLKDVTNAPSLRT 340

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +LIDMYA+ G +  A  VF+ M  K++ SW+AMI  +A +G A    +LF    M  + +
Sbjct: 341 SLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSR--MRKNGI 398

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+ +T V +L AC+    L+ G+ I                 ++   Y    KLE   C
Sbjct: 399 EPDDITFVGLLSACSHSGKLDLGRHI---------------FKSMTQDYDITPKLEHYGC 443

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           + D +               G  G   +A ++ K M    + P  + + S+L AC   G 
Sbjct: 444 MIDLL---------------GHSGLFKEAKEMIKTM---PMEPDGVIWCSLLKACRRHGN 485

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
           +E  +    ++ K     P    Y  + ++   A + +E AK+
Sbjct: 486 LELAESFARNLMKVEPENPG--SYVLLSNIYATAGEWDEVAKV 526


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 364/614 (59%), Gaps = 48/614 (7%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA--RHVFDKTRR 143
           +L  CTH N +     VH+H+   G +Q  F++ KL+   +  D   D   R VF +   
Sbjct: 45  VLHGCTHINQVK---QVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEY 101

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
              ++W AL R   L G   E + LY  M   G G  S  FT+T +LKAC A+      +
Sbjct: 102 PNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVS--FTFTALLKACSAAL----DV 155

Query: 204 KHGKEIHA-SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM-------------- 248
             G+++H  ++L  G+   +++  TLIDMY + GC+     VF +M              
Sbjct: 156 NLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVA 215

Query: 249 -----------------AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
                             +K++V+W+AM+  YA+N    EALE+F  M  ++  +  + V
Sbjct: 216 YAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERM--QAAGVKTDEV 273

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV--SALVTMYARCGKLELGQCVFD 349
           T+V V+ ACA L A +    +     + G      VV  SAL+ MYA+CG +E    VF+
Sbjct: 274 TLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFE 333

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
            M++R+V S++S+I  + +HG  G A+++F EM+   + P+ ++F+ VL ACSHAG+VE+
Sbjct: 334 RMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQ 393

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           G+ LF  M + H + PS +HYACMVDLLGRA +LEEA  +++ + + P   VWG+LLG+C
Sbjct: 394 GQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGAC 453

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
           RIH N ++A+ A+  LFELEP   GNY+LL+++YA+A  WD+V +V++L+ A+GL+K PG
Sbjct: 454 RIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPG 513

Query: 530 RSRIEVKRK-MYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
            S +E K+  ++ F + D  HP+  ++   L +L   +K  GY P    V YD+  EEK+
Sbjct: 514 CSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKK 573

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           R+++ HSEKLA+AFGL+ T+ G TIRI KNLR+CEDCHS     S+   +EI+VRD  RF
Sbjct: 574 RLLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRF 633

Query: 649 HHFRNGVCSCGDYW 662
           HHFR+G CSCG++W
Sbjct: 634 HHFRDGRCSCGNFW 647



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 144/333 (43%), Gaps = 50/333 (15%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSH-LTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
            P   T+  LL +C+    ++    VH+  +   GF  D ++   LI++Y     +    
Sbjct: 136 GPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGH 195

Query: 136 HVFDKTRRRTIYVWNALFRALTLAG-------------------------------RGEE 164
            VFD+   R +  W +L  A    G                               R  E
Sbjct: 196 RVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPRE 255

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
            LE++ RM     G+++D  T   V+ AC          K+   +     + G+    ++
Sbjct: 256 ALEVFERMQ--AAGVKTDEVTLVGVISACAQ----LGAAKYANWVRDVAEQSGFGPTSNV 309

Query: 225 M--TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
           +  + LIDMYA+ G V  A  VF +M  +NV S+S+MI  +A +G+A  A+ELF EM+  
Sbjct: 310 VVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEML-- 367

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV---VSALVTMYARCG 339
             ++ PN VT + VL AC+    +EQG+ +  + +      + P     + +V +  R G
Sbjct: 368 KTEIKPNRVTFIGVLTACSHAGMVEQGQQL--FAMMEECHGVAPSEDHYACMVDLLGRAG 425

Query: 340 KLE--LGQCVFDHMDKRDVVSWNSLISSYGVHG 370
           +LE  L       M+    V W +L+ +  +HG
Sbjct: 426 RLEEALNLVKMMPMNPHGGV-WGALLGACRIHG 457


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/602 (38%), Positives = 365/602 (60%), Gaps = 27/602 (4%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
            Y  +L  C +  +  +   VH+H+    +    FL T+LI +Y+  DS+ DA +VFD+ 
Sbjct: 245 NYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEM 304

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELY-RRMNGTGTGIRS------------------D 182
             R +  W A+  A +  G   + L L+   +  + TG+ +                  +
Sbjct: 305 PERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPN 364

Query: 183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG 242
            FT+  VL +C  SS GF L   G++IH+ +++  Y   V + ++L+DMYA+ G +  A 
Sbjct: 365 EFTFATVLTSC-TSSLGFIL---GRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEAR 420

Query: 243 FVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA 302
            VF  +  ++VVS +A+I+ YA+ G+  EALELFR +  +   +  N VT   VL A + 
Sbjct: 421 TVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRL--QGEGMKSNYVTYTGVLTALSG 478

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           LAAL+ GK +H ++LR  + S + + ++L+ MY++CG L   + +FD M +R V+SWN++
Sbjct: 479 LAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAM 538

Query: 363 ISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +  Y  HG G + +++F  M     V P  ++ ++VL  CSH GL ++G  +F  M    
Sbjct: 539 LVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGK 598

Query: 422 M-IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           + + P +EHY C+VDLLGR+ ++EEA + I+ +  EP   +WGSLLG+CR+H NV++ E 
Sbjct: 599 IEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEF 658

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
           A ++L E+EP NAGNYV+L+++YA+A  W++V  ++ L+  + + K PGRS IE+ + ++
Sbjct: 659 AGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLH 718

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
           +F + D  HP+ E++   +  LS   KE GYVP    VL+D+D E+KE+I+LGHSEKLA+
Sbjct: 719 TFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILLGHSEKLAL 778

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           +FGLI +     IR+ KNLR+C DCH+F K+ISK   +E+ +RD NRFH    G CSC D
Sbjct: 779 SFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVGGKCSCED 838

Query: 661 YW 662
           YW
Sbjct: 839 YW 840



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 183/388 (47%), Gaps = 50/388 (12%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T+  +L SCT          +HS +    ++   F+ + L+++Y+    + +AR V
Sbjct: 363 PNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTV 422

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+    R +    A+       G  EE LEL+RR+   G G++S+  TYT VL A     
Sbjct: 423 FECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQ--GEGMKSNYVTYTGVLTAL---- 476

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G + L  GK++H  VLR      V +  +LIDMY++ G + Y+  +F  M  + V+SW+
Sbjct: 477 SGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWN 536

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AM+  Y+++G   E L+LF  ++ E   + P+SVT+++VL  C+           HG + 
Sbjct: 537 AMLVGYSKHGEGREVLKLF-TLMREETKVKPDSVTILAVLSGCS-----------HGGLE 584

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
            +GL+    + S  + +     K+E   CV D +               G  G   +A +
Sbjct: 585 DKGLNIFNDMSSGKIEVEP---KMEHYGCVVDLL---------------GRSGRVEEAFE 626

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDL 436
             K+M +    P+   + S+LGAC     V+ G+   + + +   I P +  +Y  + +L
Sbjct: 627 FIKKMPFE---PTAAIWGSLLGACRVHSNVDIGEFAGQQLLE---IEPGNAGNYVILSNL 680

Query: 437 LGRANKLEEAAKIIEDLRI------EPG 458
              A + E+ +  + DL +      EPG
Sbjct: 681 YASAGRWEDVSS-LRDLMLKKTVTKEPG 707


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/605 (38%), Positives = 363/605 (60%), Gaps = 30/605 (4%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           PN  +H +  LL +C H+N +     +++ +  N   QDPF+V +L+ V S+ +S+  A 
Sbjct: 29  PNRRRH-FISLLQNCKHNNQIPP---IYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYAS 84

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            +F  T+   +Y++ AL   L L+    + + LY +M    + +  D +  T VLKAC  
Sbjct: 85  KIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQM--INSSLVPDSYAVTSVLKAC-- 140

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM------- 248
             C  +L K G+E+H+ VL+ G +    I   LI++Y + G    A  VF +M       
Sbjct: 141 -GCHLAL-KEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVA 198

Query: 249 -----------AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
                       +K+ V W+AMI    RNG +  ALE+FR M  E  D+ PN VT+V VL
Sbjct: 199 STVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQRE--DVMPNEVTIVCVL 256

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            AC+ L AL+ G+ +  Y+ +  ++    V  AL+ MY+RCG ++  Q VF+ M +++V+
Sbjct: 257 SACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVI 316

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           ++NS+I  + +HG   +A+++F+ +I  G +PS ++FV VL ACSH GL E G  +F SM
Sbjct: 317 TYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSM 376

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
            K++ I P +EHY CMVDLLGR  +LEEA   I  +++ P   + G+LL +C+IH N+EL
Sbjct: 377 AKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLEL 436

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
           AER +K L   +  ++G Y+LL++ Y+++  W E   V+  +   G++K PG S IEV  
Sbjct: 437 AERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNN 496

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
           +++ F+  D  HPQ E+++  L  L+  ++ +GY P T+VVL+D++  EKE  +  HSE+
Sbjct: 497 EIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSER 556

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+ +GLI+T    T+R+ KNLR+C DCH   K IS    ++I+VRD NRFHHF NGVCS
Sbjct: 557 LAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCS 616

Query: 658 CGDYW 662
           CGDYW
Sbjct: 617 CGDYW 621


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/609 (38%), Positives = 353/609 (57%), Gaps = 21/609 (3%)

Query: 54  ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           EL   +  +G    +  +LS+ P   Q  Y  +               VH +    G   
Sbjct: 71  ELFVRMWLEGQELDSTTLLSVMPACVQSHYSFI------------GGVVHGYSVRTGLIS 118

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           +  L   L+++YS+         +F    ++ +  W A+  + T AG  ++V  L++ M 
Sbjct: 119 ETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMG 178

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
             G  IR D F  T  L A      G   LKHGK +H   +R+G   ++ +   L++MY 
Sbjct: 179 LEG--IRPDVFAITSALDAFA----GNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYV 232

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G +  A F+F  +  K+ +SW+ +I  Y+R+ +A EA  LF EM+++   L PN+VTM
Sbjct: 233 KCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ---LRPNAVTM 289

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
             +L A A+L++LE+G+ +H Y +RRG      V +ALV MY +CG L L + +FD +  
Sbjct: 290 ACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTN 349

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           ++++SW  +I+ YG+HG G  AI +F++M   G+ P   SF ++L ACSH+GL +EG   
Sbjct: 350 KNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRF 409

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
           F +MR EH I P ++HYACMVDLL     L+EA + IE + IEP   +W SLL  CRIH 
Sbjct: 410 FNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHR 469

Query: 474 NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI 533
           NV+LAE+ ++ +FELEP N G YVLLA++YA A+ W+ V+++K  +  RGL++  G S I
Sbjct: 470 NVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWI 529

Query: 534 EVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG 593
           EV+ K + F + +  HPQ  ++   L +++  M+E+G+ P+ K  L   D    +  + G
Sbjct: 530 EVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCG 589

Query: 594 HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
           HS KLAVAFG++N S+G  IR+TKN R+C  CH   KFISK   +EI++RD NRFHHF  
Sbjct: 590 HSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEE 649

Query: 654 GVCSCGDYW 662
           G CSC  YW
Sbjct: 650 GRCSCRGYW 658



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 161/314 (51%), Gaps = 9/314 (2%)

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALT 157
           D L VH +L   GF     +   LI+ Y+  + ++DA  VFD+  +R I  WN++     
Sbjct: 2   DGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA 61

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
             G  ++ +EL+ RM   G  +  D  T   V+ ACV S   F     G  +H   +R G
Sbjct: 62  SNGLYDKAVELFVRMWLEGQEL--DSTTLLSVMPACVQSHYSFI----GGVVHGYSVRTG 115

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
                 +   L+DMY+          +F  M  KNVVSW+AMI  Y R G   +   LF+
Sbjct: 116 LISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQ 175

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
           EM +E   + P+   + S L A A   +L+ GK +HGY +R G++ +LPV +AL+ MY +
Sbjct: 176 EMGLEG--IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVK 233

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           CG +E  + +FDH+ K+D +SWN+LI  Y       +A  +F EM+   + P+ ++   +
Sbjct: 234 CGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACI 292

Query: 398 LGACSHAGLVEEGK 411
           L A +    +E G+
Sbjct: 293 LPAAASLSSLERGR 306



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 160/321 (49%), Gaps = 23/321 (7%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           G  +H  ++++G+     +   LI  YA+   +  A  VF +M  ++++SW+++I   A 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           NG+  +A+ELF  M +E  +L  +S T++SV+ AC        G ++HGY +R GL S  
Sbjct: 63  NGLYDKAVELFVRMWLEGQEL--DSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISET 120

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            + +AL+ MY+ C        +F +M++++VVSW ++I+SY   G+  K   +F+EM   
Sbjct: 121 SLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLE 180

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY----ACMVDLLGRAN 441
           G+ P   +  S L A +    ++ GK +       + IR  +E        ++++  +  
Sbjct: 181 GIRPDVFAITSALDAFAGNESLKHGKSV-----HGYAIRNGIEEVLPVANALMEMYVKCG 235

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA----SKRLFELEPTNAGNYV 497
            +EE A+ I D   +     W +L+G    +    LA  A    ++ L +L P    N V
Sbjct: 236 YMEE-ARFIFDHVTKKDTISWNTLIGG---YSRSNLANEAFTLFNEMLLQLRP----NAV 287

Query: 498 LLADVYAAADMWDEVKRVKRL 518
            +A +  AA     ++R + +
Sbjct: 288 TMACILPAAASLSSLERGREM 308


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/640 (39%), Positives = 377/640 (58%), Gaps = 27/640 (4%)

Query: 36  VSLNSSTTPTSLSS-RNKNELIQSLCKQGNLRQALDVLSIEPN------PTQHTYELLLL 88
            ++ +++ PT+L   R  N  ++SL K G L +AL ++   P+      P      L L 
Sbjct: 16  TNITATSAPTTLHKHRLHNSTLKSLSKSGKLDEALRLIESWPSKSPATAPDVEACALFLH 75

Query: 89  SCTHHNSLSDALNVHSHLT------DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           SC    +L     ++  L       ++    +P L  KLI ++S    VD+AR VF+   
Sbjct: 76  SCISRKALEHGQRLYLQLLLYRDRCNHNLLNNPTLKGKLITLFSVCGRVDEARRVFEDGG 135

Query: 143 RRTIY---VWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
                   VW A+    +  G  +E L LY  M      +    F ++  LKAC      
Sbjct: 136 EDVDLPESVWVAMGIGYSRNGYPKEALLLYYEMVCQFGQL--GNFAFSMALKAC----SD 189

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
              L+ G+ +HA VL+   +    +   L+ +Y+  GC   A  +F  M  +N+VSW+++
Sbjct: 190 LGDLRTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMPHRNLVSWNSL 249

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           IA   +    FEA+E FR  IM+   +  + VT+ ++L  CA + AL  GK IH  I++ 
Sbjct: 250 IAGLVKKEGVFEAIEAFR--IMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKS 307

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
                 PV+++LV MYA+CG ++  + VF+ M  +D+ SWN+LI+ Y ++G   +A++ F
Sbjct: 308 TAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESF 367

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           +EMI  G SP  I+F+++L  CSHAGL ++G  LFE M+ +H I P+VEHYAC+VD+LGR
Sbjct: 368 QEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDHGISPTVEHYACLVDVLGR 427

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           A +++EA +I++++  +P   +WGSLL SCR+H NV LAE  +KRLFELEP NAGNYV+L
Sbjct: 428 AGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVML 487

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS--VDEFHPQFEQLHA 557
           +++YA A MW+ VK V+  +E RG+ K  G S +++K K+++FV+   +EF    E    
Sbjct: 488 SNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVE-YKK 546

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
           +   L   M+E GYVP T VVL+D+  E +   V GHSE+LA  F LINT+ G  IRITK
Sbjct: 547 VWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLATMFALINTASGMPIRITK 606

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           NLR+C DCHS+ K +SK   + I++RD NRFHHF++GVCS
Sbjct: 607 NLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGVCS 646



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 123/592 (20%), Positives = 213/592 (35%), Gaps = 112/592 (18%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNP----TQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI  L K+  + +A++   I        +  T   +L  C    +L     +H+ +  
Sbjct: 247 NSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVK 306

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +    D  ++  L+++Y+   ++D  R VF+  + + +  WN L     + GR  E +E 
Sbjct: 307 STAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMES 366

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           ++ M    +G   D  T+  +L     S C           HA +               
Sbjct: 367 FQEM--ICSGFSPDGITFIALL-----SGCS----------HAGL--------------- 394

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
               A  GC ++            V  ++ ++    R G   EALE+ + M  +     P
Sbjct: 395 ----ADDGCRLFEMMKMDHGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFK-----P 445

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
                 S+L +C     +   + +   +     ++    V  L  +YA  G  E  + V 
Sbjct: 446 TGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYV-MLSNIYANAGMWESVKVVR 504

Query: 349 DHMDKRDVV-----SWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACS 402
           + M+KR +      SW  + S   +H +       F+  + Y  V    +  +  +G   
Sbjct: 505 EFMEKRGMTKEAGCSWLQIKSK--IHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVP 562

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
             G+V     + E MR   +   S E  A M  L+  A+ +    +I ++LR+       
Sbjct: 563 DTGVVLHD--VSEEMRAMWVCGHS-ERLATMFALINTASGM--PIRITKNLRV------- 610

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
                    H  V+   + + R+  L  TN  ++    D   ++    ++  V ++ +  
Sbjct: 611 -----CVDCHSWVKTLSKVTGRVIVLRDTNRFHH--FKDGVCSSI---QISTVYKIFQEN 660

Query: 523 GLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
                 G            F S   F    EQ    L N S E     +           
Sbjct: 661 LDGDTVGNP----------FASKPAFACGIEQCVCFLPNFSNEGNVDVW----------- 699

Query: 583 DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
                          LA  F LINT+ G  IRITKNL +C DCHS+ K +SK
Sbjct: 700 ---------------LATMFALINTASGMPIRITKNLHVCVDCHSWVKIVSK 736


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/619 (38%), Positives = 358/619 (57%), Gaps = 50/619 (8%)

Query: 53  NELIQSLCKQGNLRQALDVLSI----EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+S    G   + + V          P  +T+  +L +C+   ++     +H   T 
Sbjct: 109 NVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK 168

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G     F+   L+++Y     + +AR V D+  RR +  WN+L        R ++ LE+
Sbjct: 169 VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEV 228

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            R M                              + H     AS+L    N      TT 
Sbjct: 229 CREMESVK--------------------------ISHDAGTMASLLPAVSN------TTT 256

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
            +       VMY   +F +M  K++VSW+ MI  Y +N M  EA+EL+  M  E+    P
Sbjct: 257 EN-------VMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRM--EADGFEP 307

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           ++V++ SVL AC   +AL  GK IHGYI R+ L   L + +AL+ MYA+CG LE  + VF
Sbjct: 308 DAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVF 367

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           ++M  RDVVSW ++IS+YG  G G  A+ +F ++   G+ P  I+FV+ L ACSHAGL+E
Sbjct: 368 ENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLE 427

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG+  F+ M   + I P +EH ACMVDLLGRA K++EA + I+D+ +EP  +VWG+LLG+
Sbjct: 428 EGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGA 487

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CR+H + ++   A+ +LF+L P  +G YVLL+++YA A  W+EV  ++ +++++GL+K P
Sbjct: 488 CRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNP 547

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +EV R +++F+  D  HPQ ++++  L  L  +MKE GYVP ++  L+D++ E+KE
Sbjct: 548 GASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKE 607

Query: 589 RIVLGHSEKLAVAFGLINTSKGE-----TIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
             +  HSEKLA+ F L+NT + E     TIRITKNLR+C DCH   K IS+  ++EI++R
Sbjct: 608 THLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIR 667

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D NRFH FR GVCSCGDYW
Sbjct: 668 DTNRFHVFRFGVCSCGDYW 686



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 154/342 (45%), Gaps = 22/342 (6%)

Query: 38  LNSSTTPTSLSSR--NKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS 95
           ++ S T   LSS     N L+    K G L +A  VL         ++  L++    +  
Sbjct: 162 IHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQR 221

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF--DSVDDARHVFDKTRRRTIYVWNALF 153
             DAL V   +       D   +  L+   S+   ++V   + +F K  ++++  WN + 
Sbjct: 222 FDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMI 281

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                     E +ELY RM   G     D  + T VL AC  +S     L  GK+IH  +
Sbjct: 282 GVYMKNAMPVEAVELYSRMEADG--FEPDAVSITSVLPACGDTSA----LSLGKKIHGYI 335

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
            R      + +   LIDMYA+ GC+  A  VF  M  ++VVSW+AMI+ Y  +G   +A+
Sbjct: 336 ERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAV 395

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK-----MIHGYILRRGLDSILPVV 328
            LF +  ++   L P+S+  V+ L AC+    LE+G+     M   Y +   L+ +    
Sbjct: 396 ALFSK--LQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHL---- 449

Query: 329 SALVTMYARCGKL-ELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           + +V +  R GK+ E  + + D   + +   W +L+ +  VH
Sbjct: 450 ACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVH 491



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 2/198 (1%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           + +H+ ++         +   L+  YA    V  A  VF ++  +NV+  + MI  Y  N
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           G   E +++F  M     ++ P+  T   VL+AC+    +  G+ IHG   + GL S L 
Sbjct: 119 GFYGEGVKVFGTMC--GCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLF 176

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           V + LV+MY +CG L   + V D M +RDVVSWNSL+  Y  +     A+++ +EM    
Sbjct: 177 VGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVK 236

Query: 387 VSPSPISFVSVLGACSHA 404
           +S    +  S+L A S+ 
Sbjct: 237 ISHDAGTMASLLPAVSNT 254


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/534 (42%), Positives = 344/534 (64%), Gaps = 11/534 (2%)

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           DAR  FD+       +  A+             LEL+R M      I SD  +      A
Sbjct: 2   DARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAM------IASDSASVVDEAAA 55

Query: 193 CVASSCGFSLLKHG--KEIHASVLRHGYNGIVHIMTTLIDMYARFGC--VMYAGFVFSQM 248
            VA S    +   G    +HA + + G+     ++ T++D YA+ G   +  A  VF  M
Sbjct: 56  LVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM 115

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             ++VVSW++MIA YA+NGM+ EA+ L+ +M+     +  N+V + +VL ACA   A++ 
Sbjct: 116 E-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQT 174

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           GK IH  ++R GL+  + V +++V MY++CG++E+    F  + +++++SW+++I+ YG+
Sbjct: 175 GKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGM 234

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           HG G +A++IF EM   G+ P+ I+F+SVL ACSHAGL++EG+  + +M++E  I   VE
Sbjct: 235 HGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVE 294

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
           HY CMVDLLGRA  L+EA  +I++++++P   +WG+LL +CRIH NVELAE + KRLFEL
Sbjct: 295 HYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFEL 354

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
           + +N+G YVLL+++YA A MW +V+R++ L++ R ++K PG S  E+K K+Y F   D+ 
Sbjct: 355 DASNSGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKS 414

Query: 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
           HPQ  ++++ L  L   M+E GYVP T  VL+DLD EEKE  +  HSEKLAVAF L+N+ 
Sbjct: 415 HPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSV 474

Query: 609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
               I I KNLR+C DCH+  KFI+K   +EI++RD+ RFHHF++G+CSC DYW
Sbjct: 475 PRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 119/238 (50%), Gaps = 7/238 (2%)

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
           M A   F ++   N V  +AM + Y RN + + +LELFR MI        +    +    
Sbjct: 1   MDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFS 60

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK--LELGQCVFDHMDKRDV 356
           A A +        +H  I + G +    VV+ ++  YA+ G   LE+ + VFD M+ RDV
Sbjct: 61  ASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDV 119

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEM--IYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           VSWNS+I+ Y  +G   +AI ++ +M  +  G+  + ++  +VL AC+HAG ++ GK + 
Sbjct: 120 VSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIH 179

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
             + +  +   +V     +VD+  +  ++E A++    ++ E     W +++    +H
Sbjct: 180 NQVVRMGL-EENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMITGYGMH 235



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 93/180 (51%), Gaps = 9/180 (5%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +LL+C H  ++    ++H+ +   G +++ ++ T ++++YS    V+ A   F K + + 
Sbjct: 162 VLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKN 221

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           I  W+A+     + GRG+E LE++  M    +G+R +  T+  VL AC  S  G  LL  
Sbjct: 222 ILSWSAMITGYGMHGRGQEALEIFTEMK--RSGLRPNYITFISVLAAC--SHAG--LLDE 275

Query: 206 GKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-AC 262
           G+  + ++ +  G    V     ++D+  R GC+  A  +  +M VK +   W A++ AC
Sbjct: 276 GRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSAC 335


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/586 (39%), Positives = 356/586 (60%), Gaps = 41/586 (6%)

Query: 77   NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            +P  +TY  +L + +    L   + +H+ +   G D + F+   LI++Y     + +A  
Sbjct: 1123 DPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACR 1182

Query: 137  VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
            V D+   R +  WN+L       G+ ++ LE+ + M   G  ++ D  T   +L A V +
Sbjct: 1183 VLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLG--LKPDAGTMASLLPA-VTN 1239

Query: 197  SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
            +C                                       V +   +F ++A K++VSW
Sbjct: 1240 TC------------------------------------LDNVSFVKEMFMKLANKSLVSW 1263

Query: 257  SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
            + MIA Y  N M  EA+++F  + ME H + P+++++ SVL AC  L+AL  G+ IH Y+
Sbjct: 1264 NVMIAVYMNNSMPAEAVDIF--LQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYV 1321

Query: 317  LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            +R+ L   L + +AL+ MYA+CG LE  + VFD M  RDVVSW S+IS+YG++G G  A+
Sbjct: 1322 VRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAV 1381

Query: 377  QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
             +F  M   G++P  I+FVSVL ACSHAGL++EG+  F+ M +E  I P +EH+ CMVDL
Sbjct: 1382 SLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDL 1441

Query: 437  LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
            LGRA +++EA   I+ + +EP  +VWG+LL +CR++ N+ +   A+ +LF+L P  +G Y
Sbjct: 1442 LGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYY 1501

Query: 497  VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
            VLL+++YA A  W++V  V+ +++ +G++K+PG S  E+  ++++F++ D+ HPQ +Q++
Sbjct: 1502 VLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIY 1561

Query: 557  ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
              L  L  +MKE GYVP+T   L+D++ E+KE  +  HSEKLA+AF ++NT+ G  IRIT
Sbjct: 1562 EELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRIT 1621

Query: 617  KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C DCH   K ISK   +EI +RD NRFHHF NGVCSCGDYW
Sbjct: 1622 KNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 132/290 (45%), Gaps = 12/290 (4%)

Query: 53   NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
            N LI    K G L +A  VL   P     ++  L+  C  +    DAL V   +   G  
Sbjct: 1165 NGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLK 1224

Query: 113  QDPFLVTKLINVYSH--FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
             D   +  L+   ++   D+V   + +F K   +++  WN +           E ++++ 
Sbjct: 1225 PDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFL 1284

Query: 171  RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            +M      +  D  +   VL AC       S L  G+ IH  V+R      + +   LID
Sbjct: 1285 QMEDHA--VDPDAISIASVLPAC----GDLSALLLGRRIHEYVVRKRLQPNLLLENALID 1338

Query: 231  MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
            MYA+ GC+ YA  VF QM  ++VVSW++MI+ Y  NG   +A+ LF    M+   L P+S
Sbjct: 1339 MYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSR--MQDLGLNPDS 1396

Query: 291  VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
            +  VSVL AC+    L++G+  + + L      I+P +   V M    G+
Sbjct: 1397 IAFVSVLSACSHAGLLDEGR--YYFKLMTEECKIVPRIEHFVCMVDLLGR 1444



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 144/302 (47%), Gaps = 20/302 (6%)

Query: 179  IRSDRFTYTYVLKACVASSCGFSL-----LKHGKEIHASV-LRHGYNGIVHIMTTLIDMY 232
            I+  +FT   V+     + CG  L     +K+ K++H+ + + H  +    +   L+  Y
Sbjct: 1013 IQKPKFTQQXVV--LTENLCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAY 1070

Query: 233  ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
            A  G       +F ++  KNVV ++ MI  Y  N +  +AL +F+ M    H + P+  T
Sbjct: 1071 AVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMA--GHGIDPDHYT 1128

Query: 293  MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
               VL+A +    L  G  IH  ++R GLD  + V + L++MY +CG L     V D M 
Sbjct: 1129 YPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMP 1188

Query: 353  KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL--VEEG 410
             RDVVSWNSL++    +G    A+++ KEM   G+ P   +  S+L A ++  L  V   
Sbjct: 1189 CRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFV 1248

Query: 411  KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI---IEDLRIEPGPKVWGSLLG 467
            K +F  +  + ++      +  M+ +    +   EA  I   +ED  ++P      S+L 
Sbjct: 1249 KEMFMKLANKSLVS-----WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLP 1303

Query: 468  SC 469
            +C
Sbjct: 1304 AC 1305


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/632 (38%), Positives = 372/632 (58%), Gaps = 50/632 (7%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDAL-NVHSHLTDNGFDQDPFLVTKLINV--- 124
           ++V+S   +   + YE +  SC    S  + L  +H+ +   G  QD + +TK ++    
Sbjct: 1   MNVISCSFSLEHNLYETM--SCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCIS 58

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
            +  D +  A+ VFD   R   ++WN + R  + +   E  L LY+RM    +    + +
Sbjct: 59  STSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRM--LCSSAPHNAY 116

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA--- 241
           T+  +LKAC       S  +   +IHA + + GY   V+ + +LI+ YA  G    A   
Sbjct: 117 TFPSLLKAC----SNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLL 172

Query: 242 -----------------GFV-----------FSQMAVKNVVSWSAMIACYARNGMAFEAL 273
                            G+V           F +MA KN +SW+ MI+ Y +  M  EAL
Sbjct: 173 FDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEAL 232

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI--LRRGLDSILPVVSAL 331
           +LF EM  ++ D+ P++V++ + L ACA L ALEQGK IH Y+   R  +DS+L  V  L
Sbjct: 233 QLFHEM--QNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCV--L 288

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MYA+CG++E    VF ++ K+ V +W +LIS Y  HG+G +AI  F EM   G+ P+ 
Sbjct: 289 IDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNV 348

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           I+F +VL ACS+ GLVEEGK++F SM +++ ++P++EHY C+VDLLGRA  L+EA + I+
Sbjct: 349 ITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQ 408

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
           ++ ++P   +WG+LL +CRIH N+EL E   + L  ++P + G YV  A+++A    WD+
Sbjct: 409 EMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDK 468

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGY 571
               +RL++ +G+ KVPG S I ++   + F++ D  HP+ E++ +    +  +++E GY
Sbjct: 469 AAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGY 528

Query: 572 VPQTKVVLYDL-DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTK 630
           VP+ + +L DL D +E+E IV  HSEKLA+ +GLI T  G  IRI KNLR+C+DCH  TK
Sbjct: 529 VPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTK 588

Query: 631 FISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            ISK   ++I++RD  RFHHFR+G CSCGDYW
Sbjct: 589 LISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/583 (39%), Positives = 355/583 (60%), Gaps = 8/583 (1%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
           + T+  +L +C+   +L +   VH+ +  +GF  + F+   LI +Y++   +  ARHVFD
Sbjct: 121 KFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFD 180

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
               R+I  WN++    T  G  +EV++L+R++      I  D  T   VL AC      
Sbjct: 181 GMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKI--LELRIEFDDVTMISVLMAC----GR 234

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
            + L+ G+ I   ++  G      + T+LIDMYA+ G V  A  +F +M  ++VV+WSAM
Sbjct: 235 LANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAM 294

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I+ YA+     EAL LF EM  +  ++ PN VTMVSVL +CA L A E GK +H YI ++
Sbjct: 295 ISGYAQADRCKEALNLFHEM--QKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKK 352

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
            +   + + + L+  YA+CG ++    VF  M  ++V +W +LI     +G G  A++ F
Sbjct: 353 KMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFF 412

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
             M+ + V P+ ++F+ VL ACSHA LV++G+ LF SMR++  I P +EHY CMVD+LGR
Sbjct: 413 SSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGR 472

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           A  LEEA + I+++   P   VW +LL SCR H N+E+AE++ + +  LEP ++G+Y+LL
Sbjct: 473 AGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILL 532

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           ++ YA     ++  RV+ L++ + ++K+PG S IE+   ++ F S D  H   +++H  L
Sbjct: 533 SNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDAL 592

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
             +  ++K  GYVP T     + + E KE  V  HSEKLA+A+GLI TS   TIRI+KNL
Sbjct: 593 DKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNL 652

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCH+ TKFIS+   + I+VRD NRFHHF++G+CSC DYW
Sbjct: 653 RMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 205/371 (55%), Gaps = 14/371 (3%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF--DSVDDARHVFDKTR 142
           L+L  C    +  D   VH+HL       DP +   ++   +    D++D A  +F+   
Sbjct: 26  LILQQC---KTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHID 82

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           +     +N + R L      +  L L+++M+     ++ D+FT++ VLKAC         
Sbjct: 83  KPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKS--VQHDKFTFSSVLKAC----SRMKA 136

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L+ G+++HA +L+ G+     +  TLI MYA  G +  A  VF  M  +++V+W++M++ 
Sbjct: 137 LREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSG 196

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y +NG+  E ++LFR+++    +   + VTM+SVL AC  LA LE G++I  YI+ +GL 
Sbjct: 197 YTKNGLWDEVVKLFRKILELRIEF--DDVTMISVLMACGRLANLEIGELIGEYIVSKGLR 254

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
               + ++L+ MYA+CG+++  + +FD MDKRDVV+W+++IS Y       +A+ +F EM
Sbjct: 255 RNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEM 314

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
               V P+ ++ VSVL +C+  G  E GK +   ++K+ M + +V     ++D   +   
Sbjct: 315 QKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKM-KLTVTLGTQLIDFYAKCGY 373

Query: 443 LEEAAKIIEDL 453
           ++ + ++ +++
Sbjct: 374 IDRSVEVFKEM 384



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 14/221 (6%)

Query: 60  CKQG-NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV 118
           CK+  NL   +   ++ PN    T   +L SC    +      VH ++          L 
Sbjct: 304 CKEALNLFHEMQKGNVYPNEV--TMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLG 361

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           T+LI+ Y+    +D +  VF +   + ++ W AL + L   G G+  LE +  M      
Sbjct: 362 TQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSM--LEND 419

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH-GYNGIVHIMTTLIDMYARFGC 237
           ++ +  T+  VL AC + +C   L+  G+ +  S+ R       +     ++D+  R G 
Sbjct: 420 VKPNDVTFIGVLSAC-SHAC---LVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGF 475

Query: 238 VMYA-GFVFSQMAVKNVVSWSAMIA-CYARNG--MAFEALE 274
           +  A  F+ +     N V W  ++A C A     MA ++LE
Sbjct: 476 LEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLE 516


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/553 (40%), Positives = 343/553 (62%), Gaps = 8/553 (1%)

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           GF    +++T LI++YS    V+ AR +F +  R  +  +NA+    T  G  E  ++L+
Sbjct: 239 GFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLF 298

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           R +  +G  + S        +   +     F  L     IH   ++ G      + T   
Sbjct: 299 RELLFSGERVSSS------TIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFT 352

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
            +Y +   +  A  +F +   K VV+W+AMI+ Y +NG    A+ LF+EM+    +  PN
Sbjct: 353 AIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKT--EFTPN 410

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
           +VT+ ++L ACA L +L  GK +H  I    L+  + V +ALV MYA+CG +     +FD
Sbjct: 411 AVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFD 470

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
            M +++ V+WN++I  YG+HGYG +A++++ EM++ G +PS ++F+SVL ACSHAGLV E
Sbjct: 471 SMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGE 530

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           G+ +F +M  ++ I P +EHYACMVD+LGR+ +LE+A + I+ + +EPGP VWG+LLG+C
Sbjct: 531 GEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGAC 590

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
            IH + ++A  AS+RLFEL+P + G YVLL+++Y+    + +   ++++++ R L K PG
Sbjct: 591 MIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPG 650

Query: 530 RSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKER 589
            + IEV    + FVS D  H     ++A L  L+ +M+E GY  +T   L+D++ EEKE 
Sbjct: 651 CTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKEL 710

Query: 590 IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
            V  HSEKLA+AFGLI T  G  IRI KNLR+C DCH+ TKFISK   + I+VRD NRFH
Sbjct: 711 AVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFH 770

Query: 650 HFRNGVCSCGDYW 662
           HF++G+CSCGDYW
Sbjct: 771 HFKDGICSCGDYW 783



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 202/396 (51%), Gaps = 13/396 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P   TY   + +C++   L   + +H+H   +G+  + F+ + L+++Y  F  V  AR 
Sbjct: 108 SPDNFTYAFAVAACSNDKHL---MLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARK 164

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD    R   +WN +   L      ++ ++L+R M     G+R D  T T VL A    
Sbjct: 165 VFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREM--VADGVRVDSSTVTAVLPA---- 218

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           +     LK G  I    L+ G+    +++T LI +Y++ G V  A  +F ++   +++++
Sbjct: 219 AAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAY 278

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AMI+ +  NG    +++LFRE++     +  +S T+V ++   +    L     IHG+ 
Sbjct: 279 NAMISGFTANGGTECSVKLFRELLFSGERV--SSSTIVGLIPLHSPFGHLHLACSIHGFC 336

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++ G+     V +A   +Y +  +++L + +FD   ++ VV+WN++IS Y  +G    AI
Sbjct: 337 VKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAI 396

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +FKEM+    +P+ ++  ++L AC+  G +  GK +   ++ E++  P++     +VD+
Sbjct: 397 SLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENL-EPNIYVSTALVDM 455

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
             +   + EA ++ + +  E     W +++    +H
Sbjct: 456 YAKCGNISEAWQLFDSMS-EKNTVTWNTMIFGYGLH 490



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 152/297 (51%), Gaps = 10/297 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
            H+    NG+  D   +TKL      F +   AR +F    +  I+++N L R  +L   
Sbjct: 31  THAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDS 90

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
               + LY  +    T +  D FTY + + AC       S  KH   +HA  +  GY   
Sbjct: 91  PSSSISLYTHLR-RNTNLSPDNFTYAFAVAAC-------SNDKHLMLLHAHSIIDGYGSN 142

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V + + L+D+Y +F  V+YA  VF  M  ++ V W+ MI    +N    ++++LFREM+ 
Sbjct: 143 VFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVA 202

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           +   +  +S T+ +VL A A L  L+ G  I    L+ G      V++ L+++Y++CG +
Sbjct: 203 DGVRV--DSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDV 260

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
              + +F  +++ D++++N++IS +  +G    ++++F+E+++ G   S  + V ++
Sbjct: 261 NTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLI 317



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 96/202 (47%), Gaps = 4/202 (1%)

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           S   H  + HA  + +GY   +  +T L      F    +A  +F  +   ++  ++ ++
Sbjct: 23  STFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLV 82

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             ++ N     ++ L+  +   + +L P++ T    + AC+    L    ++H + +  G
Sbjct: 83  RGFSLNDSPSSSISLYTHL-RRNTNLSPDNFTYAFAVAACSNDKHL---MLLHAHSIIDG 138

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
             S + V SALV +Y +  ++   + VFD M +RD V WN++I+    +     +IQ+F+
Sbjct: 139 YGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFR 198

Query: 381 EMIYHGVSPSPISFVSVLGACS 402
           EM+  GV     +  +VL A +
Sbjct: 199 EMVADGVRVDSSTVTAVLPAAA 220


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/569 (39%), Positives = 349/569 (61%), Gaps = 8/569 (1%)

Query: 94   NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
             +L+    VH   + +G  Q+  +  KL+  YS++ ++DDA  +FD    R    W+ + 
Sbjct: 749  TNLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMV 808

Query: 154  RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                  G        +R +     G R D +T  +V++AC         L+ G+ IH  V
Sbjct: 809  GGFAKVGDYMNCFGTFREL--IRCGARPDNYTLPFVIRACR----DLKNLQMGRLIHHIV 862

Query: 214  LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
             + G +    +   L+DMY +   +  A F+F +M  +++V+W+ MI  YA  G A E+L
Sbjct: 863  YKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESL 922

Query: 274  ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
             LF +M  E   + P+ V MV+V+ ACA L A+ + + I  YI R+     + + +A++ 
Sbjct: 923  VLFDKMREEG--VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMID 980

Query: 334  MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
            M+A+CG +E  + +FD M++++V+SW+++I++YG HG G KA+ +F  M+  G+ P+ I+
Sbjct: 981  MHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKIT 1040

Query: 394  FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
             VS+L ACSHAGLVEEG   F  M +++ +R  V+HY C+VDLLGRA +L+EA K+I  +
Sbjct: 1041 LVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSM 1100

Query: 454  RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
              E    +WG+ LG+CR H +V LAE+A+  L EL+P N G+Y+LL+++YA A  W++V 
Sbjct: 1101 TXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVA 1160

Query: 514  RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
            +++ L+  R L+K+PG + IEV  K + F   D  HP+ ++++ +L +L  +++  GYVP
Sbjct: 1161 KIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVP 1220

Query: 574  QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
             T  VL+D+D E K  I+  HSEKLA+AFGLI T +   IRI KNLR+C DCH+F K +S
Sbjct: 1221 DTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVS 1280

Query: 634  KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
                + I+VRD NRFHHF+ G CSCGDYW
Sbjct: 1281 AITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/526 (38%), Positives = 320/526 (60%), Gaps = 8/526 (1%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           +L+    VH+  + +G  ++  +  KLI  YS++ ++DDA  +FD    R    W+ +  
Sbjct: 74  NLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 133

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
                G        +R +     G R D +T  +V++AC         L+ G+ IH  V 
Sbjct: 134 GFAKVGDYINCFGTFREL--IRCGARPDNYTLPFVIRACR----DLKNLQMGRLIHHIVY 187

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           + G +    +   L+DMY +   +  A F+F +M  +++V+W+ MI  YA  G A E+L 
Sbjct: 188 KFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLV 247

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           LF +M  E   + P+ V MV+V+ ACA L A+ + ++I  YI R+     + + +A++ M
Sbjct: 248 LFEKMREEG--VVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDM 305

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           YA+CG +E  + +FD M++++V+SW+++I++YG HG G KA+ +F  M+  G+ P  I+ 
Sbjct: 306 YAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITL 365

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
            S+L ACSHAGLVEEG   F SM +++ +R  V+HY C+VDLLGRA +L+EA K+I+ + 
Sbjct: 366 ASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMT 425

Query: 455 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514
           IE    +WG+ LG+CR H +V LAE+A+  L EL+  N G+YVLL+++YA A  W++V +
Sbjct: 426 IEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAK 485

Query: 515 VKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQ 574
           ++ L+  R L+K PG + IEV  K + F   D  HP+ ++++ +L +LS +++  GYVP 
Sbjct: 486 IRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPD 545

Query: 575 TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
           T  VL+D+D E K  I+  HSEKLA+AFGLI T +   IRI KNLR
Sbjct: 546 TNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 138/298 (46%), Gaps = 18/298 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T   ++ +C    +L     +H  +   G D D F+   L+++Y     ++DAR +
Sbjct: 158 PDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFL 217

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FDK + R +  W  +       G+  E L L+ +M     G+  D+     V+ AC    
Sbjct: 218 FDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMR--EEGVVPDKVAMVTVVFACAK-- 273

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                +   + I   + R  +   V + T +IDMYA+ GCV  A  +F +M  KNV+SWS
Sbjct: 274 --LGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWS 331

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-----KMI 312
           AMIA Y  +G   +AL+LF  M+  S  + P+ +T+ S+L AC+    +E+G      M 
Sbjct: 332 AMIAAYGYHGQGRKALDLFPMML--SSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMW 389

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
             Y +R  +     VV  L     R G+L+    +   M  ++D   W + + +   H
Sbjct: 390 EDYSVRTDVKHYTCVVDLL----GRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTH 443



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 136/298 (45%), Gaps = 18/298 (6%)

Query: 78   PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
            P  +T   ++ +C    +L     +H  +   G D D F+   L+++Y     ++DAR +
Sbjct: 834  PDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFL 893

Query: 138  FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
            FDK   R +  W  +       G   E L L+ +M     G+  D+     V+ AC    
Sbjct: 894  FDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMR--EEGVVPDKVAMVTVVFACAK-- 949

Query: 198  CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                 +   + I   + R  +   V + T +IDM+A+ GCV  A  +F +M  KNV+SWS
Sbjct: 950  --LGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWS 1007

Query: 258  AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-----KMI 312
            AMIA Y  +G   +AL+LF  M+     + PN +T+VS+L AC+    +E+G      M 
Sbjct: 1008 AMIAAYGYHGQGRKALDLFPMMLRSG--ILPNKITLVSLLYACSHAGLVEEGLRFFSXMW 1065

Query: 313  HGYILRRGLDSILPVVSALVTMYARCGKL-ELGQCVFDHMDKRDVVSWNSLISSYGVH 369
              Y +R  +     VV  L     R G+L E  + +     ++D   W + + +   H
Sbjct: 1066 EDYSVRXDVKHYTCVVDLL----GRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTH 1119


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/586 (39%), Positives = 361/586 (61%), Gaps = 10/586 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P Q +   ++ +     +L   + VH++   +G D +  +   LI++Y     V      
Sbjct: 350 PDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSA 409

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+    + +  W  +           + L L R++      +  D      +L AC    
Sbjct: 410 FEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDV--DPMMIGSILLAC---- 463

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G    K  KEIH  VL+ G   I+ I   ++++Y     V YA  VF  +  K++VSW+
Sbjct: 464 SGLKSEKLIKEIHGYVLKGGLADIL-IQNAIVNVYGELALVDYARHVFESINSKDIVSWT 522

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           +MI C   NG+A EALELF  +I    ++ P+ +T+VSVL A AAL++L++GK IHG+++
Sbjct: 523 SMITCCVHNGLAIEALELFNSLI--ETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLI 580

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R+G      + ++LV MYARCG +E  + +F+++ +RD++ W S+I++ G+HG G  AI 
Sbjct: 581 RKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAID 640

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F +M    V P  I+F+++L ACSH+GLV EGK  FE M+ E+ + P  EHYAC+VDLL
Sbjct: 641 LFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLL 700

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            R+N LEEA   + ++ IEP  +VW +LLG+CRIH N +L E A+K+L +L   N+GNYV
Sbjct: 701 ARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYV 760

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           L+++ +AA   W++V+ V+ +++   L+K PG S IEV+ K+++F++ D+ HPQ   ++ 
Sbjct: 761 LVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYL 820

Query: 558 LLINLSAEMKEK-GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
            L   +  +KEK GY  QTK+V +D+  EEK +++ GHSE+LA+ +GL+ TSKG  +RIT
Sbjct: 821 KLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLLVTSKGTCLRIT 880

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C+DCH+F K  S+ + + ++VRD +RFHHF  G+CSCGD+W
Sbjct: 881 KNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 186/366 (50%), Gaps = 14/366 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHL--TDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P Q  Y   L  C  H +L     +H+H   T N  D   FL TK +++Y    S  DA 
Sbjct: 44  PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDS-VFLDTKFVHMYGKCGSFYDAV 102

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            VFDK   RTI+ WNA+  A   AGR  E +ELY+ M   G  +  D FT+  VLKAC A
Sbjct: 103 KVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSL--DAFTFPCVLKACGA 160

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ--MAVKNV 253
               F   + G EIH   ++ GY G V +   LI MYA+ G +  A  +F    M   + 
Sbjct: 161 ----FKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDP 216

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+++I+ +   G + EAL LFR M  +   +  N+ T VS LQAC     ++ G+ IH
Sbjct: 217 VSWNSIISAHVGEGESLEALSLFRRM--QEVGVESNTYTFVSALQACEGPTFIKIGRGIH 274

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             IL+    + + V +AL+ MYA CG++E  + VF  M  +D VSWN+L+S    +    
Sbjct: 275 AVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYS 334

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
            AI  F++M   G  P  +S ++++ A   +  +  G M   +   +H I  ++     +
Sbjct: 335 DAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAG-MEVHAYAIKHGIDSNMHIGNSL 393

Query: 434 VDLLGR 439
           +D+ G+
Sbjct: 394 IDMYGK 399


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/501 (44%), Positives = 335/501 (66%), Gaps = 11/501 (2%)

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG--KEIHASVLRHGYNGIVH 223
           LEL+R M      I SD  +      A VA S    +   G    +HA + + G+     
Sbjct: 181 LELFRAM------IASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAG 234

Query: 224 IMTTLIDMYARFGC--VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           ++ T++D YA+ G   +  A  VF  M  ++VVSW++MIA YA+NGM+ EA+ L+ +M+ 
Sbjct: 235 VVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLN 293

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
               +  N+V + +VL ACA   A++ GK IH  ++R GL+  + V +++V MY++CG++
Sbjct: 294 VGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRV 353

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           E+    F  + +++++SW+++I+ YG+HG G +A++IF EM   G+ P+ I+F+SVL AC
Sbjct: 354 EMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAAC 413

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SHAGL++EG+  + +M++E  I   VEHY CMVDLLGRA  L+EA  +I++++++P   +
Sbjct: 414 SHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAI 473

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           WG+LL +CRIH NVELAE + KRLFEL+ +N+G YVLL+++YA A MW +V+R++ L++ 
Sbjct: 474 WGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKT 533

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           R ++K PG S  E+K K+Y F   D+ HPQ  ++++ L  L   M+E GYVP T  VL+D
Sbjct: 534 RRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHD 593

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           LD EEKE  +  HSEKLAVAF L+N+     I I KNLR+C DCH+  KFI+K   +EI+
Sbjct: 594 LDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREII 653

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           +RD+ RFHHF++G+CSC DYW
Sbjct: 654 IRDLQRFHHFKDGLCSCRDYW 674



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 143/273 (52%), Gaps = 11/273 (4%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD--DARHVFDKTRRRTIYVWNALFRALTL 158
           ++H+ +   GF+++  +V  +++ Y+   S D   AR VFD T  R +  WN++      
Sbjct: 219 SLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFD-TMERDVVSWNSMIALYAQ 277

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G   E + LY +M   G GI+ +    + VL AC  +      ++ GK IH  V+R G 
Sbjct: 278 NGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGA----IQTGKRIHNQVVRMGL 333

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
              V++ T+++DMY++ G V  A   F ++  KN++SWSAMI  Y  +G   EALE+F E
Sbjct: 334 EENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTE 393

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYAR 337
             M+   L PN +T +SVL AC+    L++G+  +  + +  G+++ +     +V +  R
Sbjct: 394 --MKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGR 451

Query: 338 CGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
            G L+    +   M  K D   W +L+S+  +H
Sbjct: 452 AGCLDEAYSLIKEMKVKPDAAIWGALLSACRIH 484



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 108/214 (50%), Gaps = 7/214 (3%)

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y RN + + +LELFR MI        +    +    A A +        +H  I + G +
Sbjct: 171 YVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFE 230

Query: 323 SILPVVSALVTMYARCGK--LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
               VV+ ++  YA+ G   LE+ + VFD M+ RDVVSWNS+I+ Y  +G   +AI ++ 
Sbjct: 231 RNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYS 289

Query: 381 EM--IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
           +M  +  G+  + ++  +VL AC+HAG ++ GK +   + +  +   +V     +VD+  
Sbjct: 290 KMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGL-EENVYVGTSIVDMYS 348

Query: 439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           +  ++E A++    ++ E     W +++    +H
Sbjct: 349 KCGRVEMASRAFRKIK-EKNILSWSAMITGYGMH 381



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 9/180 (5%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +LL+C H  ++     +H+ +   G +++ ++ T ++++YS    V+ A   F K + + 
Sbjct: 308 VLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKN 367

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           I  W+A+     + GRG+E LE++  M    +G+R +  T+  VL AC  S  G  LL  
Sbjct: 368 ILSWSAMITGYGMHGRGQEALEIFTEMK--RSGLRPNYITFISVLAAC--SHAG--LLDE 421

Query: 206 GKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-AC 262
           G+  + ++ +  G    V     ++D+  R GC+  A  +  +M VK +   W A++ AC
Sbjct: 422 GRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSAC 481


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/582 (38%), Positives = 353/582 (60%), Gaps = 14/582 (2%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           TY  L+  C    ++  A  VH H+  NG++   FL+  LIN+Y  F  +D+AR++FD+ 
Sbjct: 18  TYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEM 77

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             R +  W  +  A + +    + L+    M     G+R + +TY+ VL+AC        
Sbjct: 78  PDRNVVSWTTMISAYSNSNLNHKALDFLILM--LREGVRPNMYTYSSVLRACDG------ 129

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L + +++H S+L+ G    V + + LID Y++ G    A  VF++M   ++V W+++I 
Sbjct: 130 -LLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIG 188

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            +A+N    E L L++ M  +  D   +  T+ SVL+AC  LA LE G+ +H ++L+   
Sbjct: 189 GFAQNSDGDETLHLYKRM--KRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQ 246

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHM-DKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           D IL   +AL+ MY +CG LE    +F  M  ++DV+SW+++I+    +G+   A+++F+
Sbjct: 247 DLILN--NALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFE 304

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
            M   G  P+ I+ + VL ACSHAGLV +G   F+SM++   I P  EHY C++DLLGRA
Sbjct: 305 AMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRA 364

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            KL+EA K+I ++  EP    W  LLG+CR+H NV+LA  A+K + +L+P +AG Y+LL+
Sbjct: 365 GKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLS 424

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YA +  W++V  V+R +  RG++K PG S IEV +++++F+  D  HP+ E++   L 
Sbjct: 425 NIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELS 484

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            L   +   GYVP T  VL DL+ E+ E  +  HSEKLA+ FGL++    +TI I KNLR
Sbjct: 485 QLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLR 544

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH F K +S+  N+ I++RD  R+HHFR GVCSCGDYW
Sbjct: 545 ICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 95/191 (49%), Gaps = 13/191 (6%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           M  + L  +++T   +++ C    A++Q +++H ++   G +    +++ L+ MY + G 
Sbjct: 7   MHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGL 66

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L+  + +FD M  R+VVSW ++IS+Y       KA+     M+  GV P+  ++ SVL A
Sbjct: 67  LDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRA 126

Query: 401 CSHAGLVE----EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           C   GL+      G +L   +  +  +R      + ++D   +  +  +A  +  ++ I 
Sbjct: 127 CD--GLLNLRQLHGSILKVGLESDVFVR------SALIDTYSKLGEQHDALNVFNEM-IT 177

Query: 457 PGPKVWGSLLG 467
               VW S++G
Sbjct: 178 GDLVVWNSIIG 188


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/584 (37%), Positives = 355/584 (60%), Gaps = 10/584 (1%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
            Q+T+  +L +C+   +      VH  +  +GF  + ++ + L+++Y+    + +A+++ 
Sbjct: 264 NQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNML 323

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           +      +  WN+L       G  EE L L++ M+G    I  D +T+  VL  CV  S 
Sbjct: 324 ETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKI--DDYTFPSVLNCCVVGSI 381

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
                 + K +H  +++ G+     +   L+DMYA+ G +  A  VF +M  K+V+SW++
Sbjct: 382 ------NPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTS 435

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           ++  YA+N    E+L++F +M +   +  P+   + S+L ACA L  LE GK +H   ++
Sbjct: 436 LVTGYAQNNSHEESLKIFCDMRVTGVN--PDQFIVASILSACAELTLLEFGKQVHLDFIK 493

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
            GL     V ++LV MYA+CG L+    +F  M  +DV++W ++I  Y  +G G  +++ 
Sbjct: 494 SGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKF 553

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
           +  M+  G  P  I+F+ +L ACSHAGLV+EG+  F+ M K + I+P  EHYACM+DL G
Sbjct: 554 YDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFG 613

Query: 439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVL 498
           R+ KL+EA ++++ + ++P   VW SLL +CR+H N+ELAERA+  LFELEP NA  YV+
Sbjct: 614 RSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVM 673

Query: 499 LADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHAL 558
           L+++Y+A+  W++V ++++L++++G+ K PG S +E+  ++ +F+S D  HP+  +++  
Sbjct: 674 LSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTK 733

Query: 559 LINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKN 618
           +  +   +KE GYVP     L+D+D E KE  +  HSEKLAVAFGL+       IRI KN
Sbjct: 734 IDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKN 793

Query: 619 LRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           LR+C DCHS  K+IS+   + I++RD N FHHFR G CSCGDYW
Sbjct: 794 LRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 208/405 (51%), Gaps = 21/405 (5%)

Query: 60  CKQGNLRQALDV---LSIEP-NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           CK G   +A D+   + +E    +Q T   +L  C+    +     +H  +  NGF+ + 
Sbjct: 138 CKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNV 197

Query: 116 FLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           F+VT L+++Y+    V +A  +F   +  R+   +W A+       G G + +E +R M+
Sbjct: 198 FVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMH 257

Query: 174 GTGTGIRSDRFTYTYVLKAC--VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
               G+  +++T+  +L AC  V + C       G+++H  +++ G+   V++ + L+DM
Sbjct: 258 --AQGVECNQYTFPTILTACSSVLARC------FGEQVHGFIVKSGFGSNVYVQSALVDM 309

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           YA+ G +  A  +   M   +VVSW++++  + R+G+  EAL LF+   M   ++  +  
Sbjct: 310 YAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKN--MHGRNMKIDDY 367

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T  SVL  C   +     K +HG I++ G ++   V +ALV MYA+ G ++    VF+ M
Sbjct: 368 TFPSVLNCCVVGSI--NPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKM 425

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
            ++DV+SW SL++ Y  +    ++++IF +M   GV+P      S+L AC+   L+E GK
Sbjct: 426 LEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGK 485

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
            +     K  + R S   Y  +V +  +   L++A  I   ++++
Sbjct: 486 QVHLDFIKSGL-RWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK 529



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 137/473 (28%), Positives = 217/473 (45%), Gaps = 75/473 (15%)

Query: 64  NLRQALDVLSIEPNPTQ---HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTK 120
           NL   L+ ++ E    Q   H +   +LS  H+     A     H T     +  +   +
Sbjct: 11  NLLPWLNKITDERTVQQVIMHKFSSKVLSFPHNPCKFMAFLRSIHTTTAASYESIYQTNQ 70

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR------------------- 161
           L+N  S    V+DAR +FDK  ++  Y WN +  +    GR                   
Sbjct: 71  LLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITW 130

Query: 162 ------------GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
                         E  +L+R M   G   ++ +FT   VL+ C  SS G  L++ G+ I
Sbjct: 131 SSIISGYCKFGCKVEAFDLFRSMRLEGW--KASQFTLGSVLRVC--SSLG--LIQTGEMI 184

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--KNVVSWSAMIACYARNG 267
           H  V+++G+ G V ++T L+DMYA+  CV  A F+F  +    KN V W+AM+  YA+NG
Sbjct: 185 HGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNG 244

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
             ++A+E FR   M +  +  N  T  ++L AC+++ A   G+ +HG+I++ G  S + V
Sbjct: 245 DGYKAVEFFR--YMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYV 302

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
            SALV MYA+CG L+  + + + M+  DVVSWNSL+  +  HG   +A+++FK M    +
Sbjct: 303 QSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNM 362

Query: 388 SPSPISFVSVLGAC--------SHAGLV--------------------EEGKMLFESMRK 419
                +F SVL  C        S  GL+                    + G M       
Sbjct: 363 KIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVF 422

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR---IEPGPKVWGSLLGSC 469
           E M+   V  +  +V    + N  EE+ KI  D+R   + P   +  S+L +C
Sbjct: 423 EKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSAC 475



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 8/187 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           NP Q     +L +C     L     VH     +G      +   L+ +Y+    +DDA  
Sbjct: 462 NPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADA 521

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +F   + + +  W A+       G+G   L+ Y  M  +GT  R D  T+  +L AC  +
Sbjct: 522 IFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGT--RPDFITFIGLLFACSHA 579

Query: 197 SCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVV 254
                L+  G++    + + +G          +ID++ R G +  A  +  QM VK +  
Sbjct: 580 ----GLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDAT 635

Query: 255 SWSAMIA 261
            W ++++
Sbjct: 636 VWKSLLS 642


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/646 (36%), Positives = 368/646 (56%), Gaps = 44/646 (6%)

Query: 53  NELIQSLCKQGNLRQALDVLSI-----EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N LI +   +G L Q++   ++       N  +     +L+  +    +   L VH H+ 
Sbjct: 110 NSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVV 169

Query: 108 DNGFDQDPFLVTKLINVYSH----------FDS---------------------VDDARH 136
             GF    F+ + L+++YS           FD                      ++D+R 
Sbjct: 170 KFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQ 229

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +F   + +    W A+    T  G   E ++L+R M      +  D++T+  VL AC   
Sbjct: 230 LFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLEN--LEMDQYTFGSVLTAC--- 284

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
             G   L+ GK++HA ++R  Y   + + + L+DMY +   +  A  VF +M  KNVVSW
Sbjct: 285 -GGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSW 343

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AM+  Y +NG + EA+++F +M  +++ + P+  T+ SV+ +CA LA+LE+G   H   
Sbjct: 344 TAMLVGYGQNGYSEEAVKIFCDM--QNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRA 401

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           L  GL S + V +ALVT+Y +CG +E    +F  M   D VSW +L+S Y   G   + +
Sbjct: 402 LVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETL 461

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           ++F+ M+ HG  P  ++F+ VL ACS AGLV++G  +FESM KEH I P  +HY CM+DL
Sbjct: 462 RLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDL 521

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
             RA +LEEA K I  +   P    W SLL SCR H N+E+ + A++ L +LEP N  +Y
Sbjct: 522 FSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASY 581

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           +LL+ +YAA   W+EV  +++ +  +GL+K PG S I+ K +++ F + D+ +P  +Q++
Sbjct: 582 ILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIY 641

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
           + L  L+ +M ++GYVP    VL+D+D  EK +++  HSEKLA+AFGLI    G  IR+ 
Sbjct: 642 SELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVV 701

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+ TK+ISK   +EILVRD  RFH F++G CSCGD+W
Sbjct: 702 KNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCGDFW 747



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 197/418 (47%), Gaps = 70/418 (16%)

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNAL----- 152
           D   +H H+     + + FL+  L++ Y+ FD +  AR VFD+  +R +Y WN L     
Sbjct: 27  DTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYS 86

Query: 153 -----------FRAL-------------TLAGRG--EEVLELYRRMNGTGTGIRSDRFTY 186
                      F A+               AGRG   + ++ Y  M   G     +R   
Sbjct: 87  KLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGP-FNLNRIAL 145

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
           + +L       C    +  G ++H  V++ G+   V + + L+DMY++ G V  A   F 
Sbjct: 146 STMLILASKQGC----VHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFD 201

Query: 247 QMAVKNVV-------------------------------SWSAMIACYARNGMAFEALEL 275
           +M  KNVV                               SW+AMIA + +NG+  EA++L
Sbjct: 202 EMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDL 261

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           FREM +E+ ++  +  T  SVL AC  + AL++GK +H YI+R      + V SALV MY
Sbjct: 262 FREMRLENLEM--DQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMY 319

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
            +C  ++  + VF  M+ ++VVSW +++  YG +GY  +A++IF +M  +G+ P   +  
Sbjct: 320 CKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLG 379

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           SV+ +C++   +EEG           +I       A +V L G+   +E++ ++  ++
Sbjct: 380 SVISSCANLASLEEGAQFHCRALVSGLISFITVSNA-LVTLYGKCGSIEDSHRLFSEM 436



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 148/366 (40%), Gaps = 99/366 (27%)

Query: 202 LLKH---GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV----- 253
           LLKH    K+IH  +++   N  + ++  L+  YA+F  + YA  VF QM  +N+     
Sbjct: 21  LLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNT 80

Query: 254 --------------------------VSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
                                     VSW+++I+ YA  G   ++++ +  M+       
Sbjct: 81  LLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNG-PFN 139

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA----------- 336
            N + + ++L   +    +  G  +HG++++ G  S + V S LV MY+           
Sbjct: 140 LNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQA 199

Query: 337 --------------------RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
                               RC ++E  + +F  M ++D +SW ++I+ +  +G   +AI
Sbjct: 200 FDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAI 259

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK----------------- 419
            +F+EM    +     +F SVL AC     ++EGK +   + +                 
Sbjct: 260 DLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMY 319

Query: 420 ---------EHMIR----PSVEHYACMVDLLGRANKLEEAAKIIEDLR---IEPGPKVWG 463
                    E + R     +V  +  M+   G+    EEA KI  D++   IEP     G
Sbjct: 320 CKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLG 379

Query: 464 SLLGSC 469
           S++ SC
Sbjct: 380 SVISSC 385



 Score = 45.8 bits (107), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           C  L      K IH +I++   +  + +++ LV+ YA+  ++   + VFD M +R++ SW
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 360 NSLISSY 366
           N+L+SSY
Sbjct: 79  NTLLSSY 85


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/579 (40%), Positives = 356/579 (61%), Gaps = 9/579 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDARHVFDKTRR 143
           +L +  H+N + +   VH+H+   G   D F ++ L+     + + S+D A  +F +   
Sbjct: 1   MLFTLLHNNHMEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDE 60

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
            + + +N + R      + EE L LY  M     G+  D+FTY +VLKAC        ++
Sbjct: 61  PSSFDYNTMIRGNVNDMKLEEALLLYVDM--IERGVEPDKFTYPFVLKACSL----LGVV 114

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
             G ++H  V + G  G V +  +LI+MY + G +  A  VF+ M  K+V SWSA+I  +
Sbjct: 115 DEGIQVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAH 174

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           A   M  E L L  +M  E       S T+V+VL AC  L + + GK IHG +LR   + 
Sbjct: 175 ACVEMWNECLMLLGKMSSEGRCRVEES-TLVNVLSACTHLGSPDLGKCIHGILLRNISEL 233

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            + V ++L+ MY + G LE G  VF +M +++  S+  +IS   +HG G +A+++F EMI
Sbjct: 234 NVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMI 293

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
             G++P  + +V V  ACSHAGLVEEG   F+SM+ EH I P+V+HY CMVDLLGR   L
Sbjct: 294 EEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGML 353

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
           +EA ++I+ + I+P   +W SLL +C++H N+E+ + A++ LF L   N+G+Y++LA++Y
Sbjct: 354 KEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMY 413

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           A A  WD+V +++  L  R L + PG S IE KRK+Y FVS D+  PQ+  ++ ++  + 
Sbjct: 414 AKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQME 473

Query: 564 AEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCE 623
            ++K +GY+P T  VL D+D EEK+  +  HS+KLA+AFGLI+TS+G  +RIT+NLR+C 
Sbjct: 474 WQLKFEGYIPDTSQVLLDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCS 533

Query: 624 DCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           DCH++TK+IS    +EI VRD  RFHHF+NG CSC DYW
Sbjct: 534 DCHTYTKYISMIYEREITVRDRLRFHHFKNGSCSCKDYW 572


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/620 (39%), Positives = 373/620 (60%), Gaps = 14/620 (2%)

Query: 46  SLSSRNKNELIQSLCKQGNLRQALD-VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHS 104
           SL++   +  + +    G +R  LD V + E   T   Y  L+ +C  + SL DA  +H+
Sbjct: 29  SLTASVADIPVPAAASTGIIRDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHA 88

Query: 105 HLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
           HL  + F    FL   LI++Y    +V DAR VFD    R +  W +L          +E
Sbjct: 89  HLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDE 148

Query: 165 VLELYRRMNGTGTG-IRSDRFTYTYVLKACVAS-SCGFSLLKHGKEIHASVLRHGYNGIV 222
            L L   + G   G  + + FT+  +LKA  AS S G      G++IHA  +++ ++  V
Sbjct: 149 ALGL---LPGMLRGRFKPNGFTFASLLKAAGASASSGI-----GEQIHALTVKYDWHDDV 200

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
           ++ + L+DMYAR G +  A  VF Q+  KN VSW+A+IA +AR G     L +F EM  +
Sbjct: 201 YVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEM--Q 258

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
            +       T  SV  A A + ALEQGK +H ++++ G      V + ++ MYA+ G + 
Sbjct: 259 RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMI 318

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
             + VFD +DK+DVV+WNS+++++  +G G +A+  F+EM   GV  + I+F+S+L ACS
Sbjct: 319 DARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACS 378

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
           H GLV+EGK  F+ M KE+ + P ++HY  +VDLLGRA  L +A   I  + ++P   VW
Sbjct: 379 HGGLVKEGKQYFD-MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVW 437

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
           G+LLGSCR+H N ++ + A+  +FEL+P + G  VLL ++YA+   WD   RV+++++A 
Sbjct: 438 GALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKAT 497

Query: 523 GLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
           G++K P  S +E++  ++ FV+ D+ HP+ E+++     +S ++++ GYVP T  VL  +
Sbjct: 498 GVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHV 557

Query: 583 DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILV 642
           D +E++  +  HSEK+A+AF LIN   G TIRI KN+R+C DCHS  ++ISK   +EI+V
Sbjct: 558 DEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVV 617

Query: 643 RDVNRFHHFRNGVCSCGDYW 662
           RD NRFHHF +G CSCGDYW
Sbjct: 618 RDTNRFHHFSSGSCSCGDYW 637


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/617 (40%), Positives = 349/617 (56%), Gaps = 66/617 (10%)

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           G  +D F+ + L++ Y  F +  DAR V D    RT+  W+AL  A    G  E    L 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 170 RRM------------NGTGTGI-RSDRFTYTYV----------LKACVASSCGFSLLKH- 205
            RM            NG  +G+ RS R     +          L      SC  S +   
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 206 -----GKEIHASVLRHGYNGIVHIMTTLIDMYARFG-------------------C-VMY 240
                G+++H  V++ G      + T LIDMY + G                   C  + 
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229

Query: 241 AGF-----------VFSQMAVK----NVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           AG            +F +   +    NVVSW++++AC  +NG   EA++LFREM  +S  
Sbjct: 230 AGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREM--QSEG 287

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + PNSVT+  VL A A +AAL  G+  H + LR+G    + V SALV MYA+CG++   +
Sbjct: 288 IEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDAR 347

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +F+ M  R+VVSWN++I  Y +HG    A+++F+ M      P  ++F  VLGACS AG
Sbjct: 348 MIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAG 407

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
             EEG+  F  M+ +H I P +EHYACMV LLGRA KL++A  II  +  EP   +WGSL
Sbjct: 408 WTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSL 467

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           LGSCR+H NV LAE A++ LF+LEP NAGNYVLL+++YA+  MWD V R++ +++  GL+
Sbjct: 468 LGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLK 527

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K  G S IE+K K++  ++ D  HP    +   L +L+ EM+  G+ P T  VL+D++ +
Sbjct: 528 KEKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQ 587

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           EK+ I+  HSEKLAVA GLI+TS G  +++ KNLR+C DCH   KFIS F  +EI VRD 
Sbjct: 588 EKDDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDT 647

Query: 646 NRFHHFRNGVCSCGDYW 662
           NRFHHF++G CSC DYW
Sbjct: 648 NRFHHFKDGKCSCADYW 664



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           IEPN    T   +L +  +  +L    + H      GF  D ++ + L+++Y+    V D
Sbjct: 288 IEPNSV--TIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRD 345

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR +F+    R +  WNA+     + G  E  + L+R M  +    + D  T+T VL AC
Sbjct: 346 ARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKE--KPDLVTFTCVLGAC 403


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/637 (38%), Positives = 372/637 (58%), Gaps = 45/637 (7%)

Query: 53  NELIQSLCKQGNLRQALDVLSI----EPNPTQHTYELLLLSCTHHNSLSDALNVHSH-LT 107
           N +I SL +     +AL  L +       P   T   +L +C+H   L     +H+  L 
Sbjct: 256 NTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLM 315

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
           +N   ++ F+   L+++Y +    +  R VFD   RRTI VWNA+           E +E
Sbjct: 316 NNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIE 375

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+  M     G+  +  T + VL ACV   C   L K G  IH+ V++ G+    ++   
Sbjct: 376 LFVEMVFE-LGLSPNSVTLSSVLPACV--RCESFLDKEG--IHSCVVKWGFEKDKYVQNA 430

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM------ 281
           L+DMY+R G +  A  +F  M  K++VSW+ MI  Y   G   +AL L  +M        
Sbjct: 431 LMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHR 490

Query: 282 ----------ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
                     ++  L PNSVT+++VL  CAALAAL +GK IH Y +++ L   + V SAL
Sbjct: 491 INTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSAL 550

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG----- 386
           V MYA+CG L L + VF+ M  R+V++WN LI +YG+HG G +A+++F+ M+  G     
Sbjct: 551 VDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNRE 610

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           + P+ ++++++  + SH+G+V+EG  LF +M+ +H I P+ +HYAC+VDLLGR+ ++EEA
Sbjct: 611 IRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEA 670

Query: 447 AKIIEDLRIE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
             +I+ +         W SLLG+C+IH N+E+ E A+K LF L+P               
Sbjct: 671 YNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDPN-------------V 717

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
            D   +   + R ++ +G++K PG S IE   +++ F++ D  HPQ +++H  L  LS  
Sbjct: 718 LDYGTKQSMLGRKMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLR 777

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           MK++GYVP T  VL+++  EEKE ++ GHSE+LA+AFGL+NTS G TIR+ KNLR+C DC
Sbjct: 778 MKKEGYVPDTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDC 837

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H  TKFISK  ++EI++RDV RFHHFRNG CSCGDYW
Sbjct: 838 HVATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 198/410 (48%), Gaps = 22/410 (5%)

Query: 4   LQSPQTPQLLRSP--YHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCK 61
           + S   P LL  P   HT +  H PP  SS     +  ++TT  +   R  +E +  L  
Sbjct: 1   MSSFTQPLLLPYPSSIHTPNKHHSPPTSSSAI--TTTTTTTTTVAAEPRLPSEWVSHLRS 58

Query: 62  Q----GNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           Q        QA+    ++++    P    +  +L +      L+    +H+H+   G   
Sbjct: 59  QTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQAL 118

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
              +   L+N+Y     +D AR VFD+   R    WN++  A       E  + L+R M 
Sbjct: 119 PTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLML 178

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
               G  S  FT   V  AC     G  L   GK++HA VLR+G +        L+ MYA
Sbjct: 179 LENVGPTS--FTLVSVAHACSNLINGLLL---GKQVHAFVLRNG-DWRTFTNNALVTMYA 232

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G V  A  +F     K++VSW+ +I+  ++N    EAL L+  ++++S  + PN VT+
Sbjct: 233 KLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEAL-LYLHVMLQS-GVRPNGVTL 290

Query: 294 VSVLQACAALAALEQGKMIHGYIL-RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
            SVL AC+ L  L  GK IH ++L    L     V  ALV MY  C + E G+ VFD M 
Sbjct: 291 ASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMF 350

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGAC 401
           +R +  WN++I+ Y  + +  +AI++F EM++  G+SP+ ++  SVL AC
Sbjct: 351 RRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPAC 400



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 165/320 (51%), Gaps = 14/320 (4%)

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
           N    G+  D F +  VLKA    + G   L  GK++HA V + G      +  +L++MY
Sbjct: 75  NMVTAGVPPDNFAFPAVLKA----TAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMY 130

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
            + G +  A  VF ++  ++ VSW++MI    R      A+ LFR M++E  ++ P S T
Sbjct: 131 GKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLE--NVGPTSFT 188

Query: 293 MVSVLQACAALA-ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           +VSV  AC+ L   L  GK +H ++LR G D      +ALVTMYA+ G++   + +FD  
Sbjct: 189 LVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVF 247

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           D +D+VSWN++ISS   +    +A+     M+  GV P+ ++  SVL ACSH  ++  GK
Sbjct: 248 DDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGK 307

Query: 412 ML--FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL-GS 468
            +  F  M  + +I  S    A +VD+     K  E  +++ D        VW +++ G 
Sbjct: 308 EIHAFVLMNND-LIENSFVGCA-LVDMYCNC-KQPEKGRLVFDGMFRRTIAVWNAMIAGY 364

Query: 469 CRIHCNVELAERASKRLFEL 488
            R   + E  E   + +FEL
Sbjct: 365 VRNEFDYEAIELFVEMVFEL 384


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/621 (38%), Positives = 364/621 (58%), Gaps = 15/621 (2%)

Query: 48  SSRNKNELIQSLCKQGNLRQALDVL-----SIEPNPTQHTYELLLLSCTHHNSLSDALNV 102
           S+R+ N LI+S  + G+   AL +          +P QHT    + SC+    LS    V
Sbjct: 134 SARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGV 193

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
            ++    GF  D F++  LI++Y+    V  A  +F   + + +  WNA+       G  
Sbjct: 194 QAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDW 253

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG-FSLLKHGKEIHASVLRHGYNGI 221
           +EV+E+++       G+   R  +  V    VA++CG       G+ I       G    
Sbjct: 254 KEVVEMFK-------GMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRS 306

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
            ++ T L+DMYA+ G +  A  +F +M  ++VV+WSAMI+ Y ++    EAL +F EM  
Sbjct: 307 RNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEM-- 364

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           +  ++ PN VTMVSVL ACA L ALE GK +H YI R+ L   + + +ALV  YA+CG +
Sbjct: 365 QGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCI 424

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           +     F+ M  R+  +W +LI     +G   +A+++F  M+   + P+ ++F+ VL AC
Sbjct: 425 KDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLAC 484

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SH  LVEEG+  F SM +++ I P +EHY CMVDLLGRA  ++EA + I ++ IEP   V
Sbjct: 485 SHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVV 544

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W +LL +C +H NVE+ E A K++  L+P ++GNY+LL++ YA+   W     V++ ++ 
Sbjct: 545 WRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKE 604

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           +G++K+PG S IE++  ++ F + D  HPQ  +++  +  +   +K  GY+P T     D
Sbjct: 605 KGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLD 664

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           +D  EK+  V  HSEKLA+AFGL+ +  G TIR++KNLR+C DCHS TK ISK  N+EI+
Sbjct: 665 VDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREII 724

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           VRD NRFHHF++G+CSC DYW
Sbjct: 725 VRDRNRFHHFKDGLCSCNDYW 745


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/615 (37%), Positives = 357/615 (58%), Gaps = 35/615 (5%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           N  + T+  LL+  +    +     +H H+   GF    F+ + L+++YS    +  AR 
Sbjct: 140 NLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARK 199

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM-----------------NGTG--- 176
           VFD+   + + ++N L   L   GR E+   L+  M                 NG     
Sbjct: 200 VFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDA 259

Query: 177 ---------TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
                      ++ D++T+  VL AC     G   L+ GK++HA ++R  Y   + + + 
Sbjct: 260 IDIFREMKLENLQMDQYTFGSVLTAC----GGVMALQEGKQVHAYIIRTDYKDNIFVASA 315

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+DMY +   +  A  VF +M  KNVVSW+AM+  Y +NG + EA++ F +M  + + + 
Sbjct: 316 LVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDM--QKYGIE 373

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+  T+ SV+ +CA LA+LE+G   H   L  GL S + V +ALVT+Y +CG +E    +
Sbjct: 374 PDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRL 433

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F+ +  +D V+W +L+S Y   G   + I +F+ M+ HG+ P  ++F+ VL ACS AGLV
Sbjct: 434 FNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLV 493

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           E+G  +FESM  EH I P  +HY CM+DL  RA ++EEA   I  +   P    W +LL 
Sbjct: 494 EKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLS 553

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           SCR + N+++ + A++ L EL+P N  +YVLL+ VYAA   W+EV R+++ +  +GL+K 
Sbjct: 554 SCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKE 613

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           PG S I+ K +++ F + D+ +P  +Q+++ L  L+ +M ++GYVP    VL+D+   EK
Sbjct: 614 PGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEK 673

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
            +++  HSEKLA+AFGL+    G  IR+ KNLR+C DCH+ TK+ISK  N+EILVRD  R
Sbjct: 674 IKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTAR 733

Query: 648 FHHFRNGVCSCGDYW 662
           FH F++G CSCGD+W
Sbjct: 734 FHLFKDGTCSCGDFW 748



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 204/439 (46%), Gaps = 70/439 (15%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
            H   LL L C  HN  + A N+HSH+       + FL+  LI+ Y+   S+  A  VFD
Sbjct: 10  NHYCALLKLCCETHN-FTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFD 68

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRM---------------NGTGTGIRS--- 181
           +     +Y WN +  A +  GR  E+  L+  M                G G   +S   
Sbjct: 69  QMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKA 128

Query: 182 -------------DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
                        +R T++ +L       C    +K G++IH  V++ G+   V + + L
Sbjct: 129 YNLMLKNDGSFNLNRITFSTLLILASKRGC----VKLGRQIHGHVVKFGFMSYVFVGSPL 184

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVV-------------------------------SWS 257
           +DMY++ G +  A  VF ++  KNVV                               SW+
Sbjct: 185 VDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWT 244

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           +MI  + +NG+  +A+++FREM +E  +L  +  T  SVL AC  + AL++GK +H YI+
Sbjct: 245 SMITGFTQNGLDRDAIDIFREMKLE--NLQMDQYTFGSVLTACGGVMALQEGKQVHAYII 302

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R      + V SALV MY +C  ++  + VF  M  ++VVSW +++  YG +GY  +A++
Sbjct: 303 RTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVK 362

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
            F +M  +G+ P   +  SV+ +C++   +EEG           +I       A +V L 
Sbjct: 363 TFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNA-LVTLY 421

Query: 438 GRANKLEEAAKIIEDLRIE 456
           G+   +E++ ++  ++  +
Sbjct: 422 GKCGSIEDSHRLFNEISFK 440



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 133/308 (43%), Gaps = 64/308 (20%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
            T++  Y++ G V    ++F  M  ++ VSW+++I+ YA  G+ +++++ +  M+     
Sbjct: 79  NTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGS 138

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA--------- 336
              N +T  ++L   +    ++ G+ IHG++++ G  S + V S LV MY+         
Sbjct: 139 FNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCAR 198

Query: 337 ----------------------RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
                                 RCG++E  + +F  M +RD +SW S+I+ +  +G    
Sbjct: 199 KVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRD 258

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK--------------- 419
           AI IF+EM    +     +F SVL AC     ++EGK +   + +               
Sbjct: 259 AIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVD 318

Query: 420 ---------------EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR---IEPGPKV 461
                          + M   +V  +  M+   G+    EEA K   D++   IEP    
Sbjct: 319 MYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFT 378

Query: 462 WGSLLGSC 469
            GS++ SC
Sbjct: 379 LGSVISSC 386


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/614 (36%), Positives = 366/614 (59%), Gaps = 12/614 (1%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N  I      G+ + AL++L    S    P   T   +L +C    + +    +H  +  
Sbjct: 272 NAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVK 331

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              D D ++   L+++Y+    +DDA+ VFD   +R + +WNAL    +   +  E L L
Sbjct: 332 ANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSL 391

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + RM   G  +  +R T   VLK    S+     +   +++HA   + G+    H++  L
Sbjct: 392 FCRMRKEGFDV--NRTTLAAVLK----STASLEAISDTRQVHALAEKLGFLSDSHVVNGL 445

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           ID Y +  C+ YA  VF +    +++++++MI   ++     +A++LF EM+ +  D  P
Sbjct: 446 IDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLD--P 503

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +   + S+L ACA+L+A EQGK +H ++++R   S +   +ALV  YA+CG +E     F
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAF 563

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             + ++ VVSW+++I     HG+G +A+ +F  M+   +SP+ I+  SVL AC+HAGLV+
Sbjct: 564 SGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVD 623

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           E K  F SM++   I  + EHYACM+DLLGRA KL++A +++  +  +    VWG+LL +
Sbjct: 624 EAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAA 683

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
            R+H + EL   A+++LF LEP  +G +VLLA+ YA+A MWD+V +V++L++   ++K P
Sbjct: 684 SRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEP 743

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
             S +E+K K+++F+  D+ HP+   ++A L  L   M + GYVP  +V L+D+D  EKE
Sbjct: 744 AMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKE 803

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
            ++  HSE+LAVAF LI+T  G  IR+ KNLR+C DCH+  KFIS   ++EI++RD+NRF
Sbjct: 804 LLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRF 863

Query: 649 HHFRNGVCSCGDYW 662
           HHFR+G CSC DYW
Sbjct: 864 HHFRDGACSCRDYW 877



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 209/443 (47%), Gaps = 19/443 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P +  +  ++ +CT    L     VH+ +   G+D+D F    L+++YS    +  A  
Sbjct: 199 QPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAV 258

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF K     +  WNA      L G  +  LEL  +M    +G+  + FT + +LKAC A 
Sbjct: 259 VFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMK--SSGLVPNVFTLSSILKAC-AG 315

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           S  F+L   G++IH  +++   +   +I   L+DMYA+ G +  A  VF  +  +++V W
Sbjct: 316 SGAFNL---GRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLW 372

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +A+I+  +      EAL LF  M  E  D+  N  T+ +VL++ A+L A+   + +H   
Sbjct: 373 NALISGCSHGAQHAEALSLFCRMRKEGFDV--NRTTLAAVLKSTASLEAISDTRQVHALA 430

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            + G  S   VV+ L+  Y +C  L     VF+     D++++ S+I++     +G  AI
Sbjct: 431 EKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAI 490

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           ++F EM+  G+ P P    S+L AC+     E+GK +   + K   +       A +V  
Sbjct: 491 KLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNA-LVYT 549

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE--LEPTNAG 494
             +   +E+A      L  E G   W +++G    H + + A     R+ +  + P    
Sbjct: 550 YAKCGSIEDADLAFSGLP-EKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISP---- 604

Query: 495 NYVLLADVYAA---ADMWDEVKR 514
           N++ +  V  A   A + DE KR
Sbjct: 605 NHITMTSVLCACNHAGLVDEAKR 627



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 179/379 (47%), Gaps = 20/379 (5%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTK--LINVYSHFDSVDDARHVFDKTRRRTIYVWNA 151
            SL    ++H+HL  +G     F V +  L++ YS       AR VFD+        W++
Sbjct: 18  QSLLQGAHIHAHLLKSGL----FAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSS 73

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           L  A +      + L  +R M      +R + F    VLK   A   GF     G ++HA
Sbjct: 74  LVTAYSNNAMPRDALGAFRSMRSCS--VRCNEFVLPVVLKC--APDAGF-----GTQLHA 124

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNVVSWSAMIACYARNGMAF 270
             +  G  G + +   L+ MY  FG V  A  VF +    +N VSW+ +++ Y +N    
Sbjct: 125 LAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCS 184

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
            A+++F EM+     + PN      V+ AC     LE G+ +H  ++R G D  +   +A
Sbjct: 185 HAVKVFGEMVWGG--VQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANA 242

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           LV MY++ G + +   VF  + + DVVSWN+ IS   +HG+   A+++  +M   G+ P+
Sbjct: 243 LVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPN 302

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
             +  S+L AC+ +G    G+ +   M K +    +   +  +VD+  +   L++A K+ 
Sbjct: 303 VFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLDDAKKVF 361

Query: 451 EDLRIEPGPKVWGSLLGSC 469
            D   +    +W +L+  C
Sbjct: 362 -DWIPQRDLVLWNALISGC 379


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/620 (38%), Positives = 368/620 (59%), Gaps = 25/620 (4%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N  ++ L +Q + ++AL++    L+   +P   T+     SC   +       +H H+  
Sbjct: 25  NARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIK 84

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR--RRTIYVWNALFRALTLAGRGEEVL 166
            G + +PF+ T LI++Y    ++  AR VFD+    R     +NAL    +L  R  + +
Sbjct: 85  TGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAV 144

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            L+R+M   G  + +   T   ++  C     G   L  G  +HA  +R G +G + +  
Sbjct: 145 LLFRQMRKEGVSVNA--VTMLGLIPVCA----GPIHLGFGTSLHACSVRFGLDGDLSVGN 198

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+ MY R G V +A  +F  M  K +++W+AMI+ YA+NG+A   L+L+R+M  E   +
Sbjct: 199 CLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKM--EFTGI 256

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+ VT+V VL +CA L A   G+ +   I   G      + +AL+ MYARCG L   + 
Sbjct: 257 VPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARA 316

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +FD M +++V+SW ++I+ YG+HG G  A+Q+F EMI     P   +FVSVL ACSHAGL
Sbjct: 317 IFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGL 376

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
            E+G   F +M +++ ++P  EHY+C+VDLLGRA +LEEA K+I  + +EP   VWG+LL
Sbjct: 377 TEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALL 436

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+C+IH NVELAE A +++ E EPTN G YVLL+++++ A   + + RV+ ++  R L+K
Sbjct: 437 GACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKK 496

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S +E + +++ F++ D  HPQ ++++ +L  L   +K +G          D D E 
Sbjct: 497 EPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSN-------DNDQES 549

Query: 587 K-ERIVLG---HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILV 642
           + E ++ G   HSEKLA+AFGLINT  G  I + KNLR+C DCH F K +S+  +++++V
Sbjct: 550 RNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVV 609

Query: 643 RDVNRFHHFRNGVCSCGDYW 662
           RD  RFHHF+NGVCSC DYW
Sbjct: 610 RDATRFHHFKNGVCSCKDYW 629


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/646 (36%), Positives = 368/646 (56%), Gaps = 44/646 (6%)

Query: 53  NELIQSLCKQGNLRQALDVLSI-----EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N L+      G + +++ V ++       N  + T+  +L+  ++   +     +H  + 
Sbjct: 106 NSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIF 165

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV------------------- 148
             G+    F+ + L+++Y+    ++DA  +F++   + I V                   
Sbjct: 166 KFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQ 225

Query: 149 ------------WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
                       W  +   LT  G  +E ++ ++ M   G  +  D+FT+  VL AC   
Sbjct: 226 LFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCM--DQFTFGSVLTAC--- 280

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
             GF  L  GK+IHA ++R  Y   + + + L+DMY +   V YA  VF +M  KNV+SW
Sbjct: 281 -GGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISW 339

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AM+  Y +NG + EA+ +F +M  + +++ P+  T+ SV+ +CA LA+LE+G   HG  
Sbjct: 340 TAMLVGYGQNGYSEEAVRIFCDM--QRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQA 397

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           L  GL   + V +AL+T+Y +CG LE    +F  M  RD VSW +L+S Y   G   + I
Sbjct: 398 LASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETI 457

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F+ M+ HG+ P  ++FV VL ACS AGLVE+G   FE M KEH I P  +HY CM+DL
Sbjct: 458 SLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDL 517

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           L RA +LEEA   I  +   P    W +LL SCR++ N+E+ + A++ L +LEP N  +Y
Sbjct: 518 LSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASY 577

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           +LL+ +YAA   WD+V ++++ +   G++K PG S I+ K K++ F + D   P  +Q++
Sbjct: 578 ILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIY 637

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
           A L +L  +M E+GYVP    VL+D++  EK +++  HSEKLA+AFGL+    G  IR+ 
Sbjct: 638 AKLESLYLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVV 697

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+ TK+IS+   +EILVRD  RFH F++GVCSCGD+W
Sbjct: 698 KNLRVCGDCHNATKYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 193/410 (47%), Gaps = 43/410 (10%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           NP    Y  L+ +      L +A NV  H+       + F    L++ YS    + D + 
Sbjct: 37  NPETFLYNNLINTYGKLGDLKNARNVFDHIPQ----PNLFSWNTLLSAYSKLGYLQDMQR 92

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD      +  WN+L       G   E + +Y  M   G+ +  +R T++ +L   ++S
Sbjct: 93  VFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGS-VNLNRITFSTML--ILSS 149

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV-- 254
           + GF  L  G++IH  + + GY   + + + L+DMYA+ G +  A  +F ++  KN+V  
Sbjct: 150 NRGFVDL--GRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVY 207

Query: 255 -----------------------------SWSAMIACYARNGMAFEALELFREMIMESHD 285
                                        SW+ +I    +NG+  EA++ F+EM +E   
Sbjct: 208 NTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEG-- 265

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
            C +  T  SVL AC    AL++GK IH YI+R      + V SAL+ MY +C  ++  +
Sbjct: 266 FCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAE 325

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VF  M  ++V+SW +++  YG +GY  +A++IF +M  + + P   +  SV+ +C++  
Sbjct: 326 AVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLA 385

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
            +EEG           +I   V     ++ L G+   LE A ++  +++I
Sbjct: 386 SLEEGAQFHGQALASGLI-CFVTVSNALITLYGKCGSLEHAHQLFHEMKI 434



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 4/143 (2%)

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
            + L+ C       Q K +H  I+R   +    + + L+  Y + G L+  + VFDH+ +
Sbjct: 9   TAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQ 68

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
            ++ SWN+L+S+Y   GY     ++F  M  H V    +S+ S+L   +  GL+ E   +
Sbjct: 69  PNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDV----VSWNSLLSGYAGNGLISESVRV 124

Query: 414 FESMRKEHMIRPSVEHYACMVDL 436
           +  M K+  +  +   ++ M+ L
Sbjct: 125 YNMMLKDGSVNLNRITFSTMLIL 147


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/612 (38%), Positives = 365/612 (59%), Gaps = 20/612 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQH----TYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I   C+ GN   AL VL+            T   +L  C   + + + + +H H+  
Sbjct: 191 NAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK 250

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +G D D F+   LIN+YS F  + DA+ VFD+   R +  WN++  A          L  
Sbjct: 251 HGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRF 310

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL-----RHGYNGIVH 223
           ++ M   G  IR D  T        V+ +  FS L   + I  S+L     R   +  V 
Sbjct: 311 FKGMQLGG--IRPDLLT-------VVSLTSIFSQLSD-QRISRSILGFVIRREWLDKDVV 360

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           I   L++MYA+ G +  A  VF Q+  K+ +SW+ ++  Y +NG+A EA++ +  M+ E 
Sbjct: 361 IGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAY-NMMEEC 419

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
            D  PN  T VS++ A + + AL+QG  IH  +++  L   + V + L+ +Y +CG+LE 
Sbjct: 420 RDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLED 479

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              +F  + +   V WN++I+S G+HG G +A+Q+FK+M+   V    I+FVS+L ACSH
Sbjct: 480 AMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSH 539

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
           +GLV+EG+  F+ M+KE+ I+PS++HY CMVDLLGRA  LE+A +++ ++ I+P   +WG
Sbjct: 540 SGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWG 599

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           +LL +C+I+ N EL   AS RL E++  N G YVLL+++YA  + W+ V +V+ L   RG
Sbjct: 600 ALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRG 659

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
           L+K PG S + V  K   F + ++ HP++ +++  L  LSA+MK  GYVP    V  D++
Sbjct: 660 LRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIE 719

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            +EKE+I+  HSE+LA+AFG+I+T     IRI KNLR+C DCH+ TK+IS+ + +EI+VR
Sbjct: 720 EDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVR 779

Query: 644 DVNRFHHFRNGV 655
           D NRFHHF++G+
Sbjct: 780 DSNRFHHFKDGI 791



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 175/317 (55%), Gaps = 14/317 (4%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           +  L  SC + N+      +H+ L   G  Q+  L TKLIN+Y     +  +R  FD   
Sbjct: 25  FNALFNSCVNVNATK---KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGT--GTGIRSDRFTYTYVLKACVASSCGF 200
           ++ I+ WN++  A    G+  E +    ++     G  +R D +T+  +LKACV+     
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS----- 136

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             L  GK++H  V + G+   V +  +L+ +Y+R+G +  A  VF  M VK+V SW+AMI
Sbjct: 137 --LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMI 194

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           + + +NG A  AL +   M  E   +  +++T+ S+L  CA    +  G +IH ++L+ G
Sbjct: 195 SGFCQNGNAAGALGVLNRMKGEGVKM--DTITVASILPVCAQSDDVINGVLIHLHVLKHG 252

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           LDS + V +AL+ MY++ G+L+  Q VFD M+ RD+VSWNS+I++Y  +     A++ FK
Sbjct: 253 LDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFK 312

Query: 381 EMIYHGVSPSPISFVSV 397
            M   G+ P  ++ VS+
Sbjct: 313 GMQLGGIRPDLLTVVSL 329



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 132/264 (50%), Gaps = 7/264 (2%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           K++HA +L  G +  + + T LI++Y   G +  +   F  +  KN+ SW+++I+ Y R 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 267 GMAFEALELFREM--IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           G   EA+    ++  +     L P+  T   +L+AC +L     GK +H  + + G +  
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV---DGKKVHCCVFKMGFEDD 155

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + V ++LV +Y+R G L++   VF  M  +DV SWN++IS +  +G    A+ +   M  
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG 215

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            GV    I+  S+L  C+ +  V  G ++   + K H +   V     ++++  +  +L+
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK-HGLDSDVFVSNALINMYSKFGRLQ 274

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGS 468
           +A  + + + +      W S++ +
Sbjct: 275 DAQMVFDQMEVRDLVS-WNSIIAA 297


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/580 (39%), Positives = 351/580 (60%), Gaps = 9/580 (1%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  LL  CT    L+    VH HL  + F  D  +   L+N+Y+   S+++AR VFDK  
Sbjct: 54  YNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMP 113

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
            R    W  L    +   R  + L L+ +M     G   + FT + V+KA  A   G   
Sbjct: 114 ERDFVTWTTLISGYSQHDRPFDALVLFNQM--LRFGFSPNEFTLSSVIKAAAAERRGCC- 170

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
              G ++H   ++ G++  VH+ + L+D+Y R+G +  A  VF  +  +N VSW+A+IA 
Sbjct: 171 ---GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAG 227

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           +AR     +ALELF+ M+ E     P+  +  S+  AC++   LEQGK +H Y+++ G  
Sbjct: 228 HARRCGTEKALELFQGMLREG--FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEK 285

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
            +    + L+ MYA+ G +   + +FD + KRDVVSWNSL+++Y  HG+G +A+  F+EM
Sbjct: 286 LVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEM 345

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              G+ P+ ISF+SVL ACSH+GL++EG   +E M+K+ ++  +  HY  +VDLLGRA  
Sbjct: 346 RRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAW-HYVTIVDLLGRAGD 404

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           L  A + IE++ IEP   +W +LL +CR+H N EL   A++ +FEL+P + G +V+L ++
Sbjct: 405 LNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNI 464

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           YA+   W++  RV++ ++  G++K P  S +E++  ++ FV+ DE HPQ E++      +
Sbjct: 465 YASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEV 524

Query: 563 SAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLC 622
            A++KE GYVP T  V+  +D +E+E  +  HSEK+A+AF L+NT  G TI I KN+R+C
Sbjct: 525 LAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVC 584

Query: 623 EDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            DCHS  K  SK   +EI+VRD NRFHHF++G CSC DYW
Sbjct: 585 GDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 15/226 (6%)

Query: 46  SLSSRNK---NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSD 98
           +L SRN    N LI    ++    +AL++    L     P+  +Y  L  +C+    L  
Sbjct: 212 ALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQ 271

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
              VH+++  +G     F    L+++Y+   S+ DAR +FD+  +R +  WN+L  A   
Sbjct: 272 GKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQ 331

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G G E +  +  M     GIR +  ++  VL AC  S     LL  G   +  + + G 
Sbjct: 332 HGFGNEAVCWFEEMR--RGGIRPNEISFLSVLTACSHS----GLLDEGWHYYELMKKDGI 385

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMI-AC 262
                   T++D+  R G +  A     +M ++   + W A++ AC
Sbjct: 386 VLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNAC 431


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/623 (37%), Positives = 363/623 (58%), Gaps = 16/623 (2%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDAL 100
           ST   SLS   + ++   L ++ N  Q      + P+       + L + T +  +  A+
Sbjct: 164 STMIRSLSRNKEFDMALELIREMNFMQ------VRPSEVAMVSMVNLFADTANMRMGKAM 217

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           + +     N         T L+++Y+    +  AR +F+   ++T+  W A+      + 
Sbjct: 218 HAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSN 277

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS-LLKHGKEIHASVLRHGYN 219
           R EE  +L+ RM       + +      +    +   CGF+  L+ GK++HA +LR+G++
Sbjct: 278 RLEEGTKLFIRM-------QEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFS 330

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             + + T L+DMY +   +  A  +F     ++V+ W+AM++ YA+     +A  LF +M
Sbjct: 331 VSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM 390

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
              +  + P  VT+VS+L  CA   AL+ GK +H YI +  ++    + +ALV MYA+CG
Sbjct: 391 --RTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCG 448

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            +     +F     RD+  WN++I+ + +HGYG +A+ IF EM   GV P+ I+F+ +L 
Sbjct: 449 DINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLH 508

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           ACSHAGLV EGK LFE M     + P +EHY CMVDLLGRA  L+EA ++I+ + I+P  
Sbjct: 509 ACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNT 568

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
            VWG+L+ +CR+H N +L E A+ +L E+EP N G  VL++++YAAA+ W +   V++ +
Sbjct: 569 IVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTM 628

Query: 520 EARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579
           +  G++K PG S IEV   ++ F+  D+ HPQ  +++ +L  +  ++ E GYVP T  VL
Sbjct: 629 KTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVL 688

Query: 580 YDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKE 639
            ++D EEKE  +  HSEKLA+AFGLI+T+    IRI KNLR+C DCH+ TK +SK   + 
Sbjct: 689 LNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRV 748

Query: 640 ILVRDVNRFHHFRNGVCSCGDYW 662
           I+VRD NRFHHFR G CSCGDYW
Sbjct: 749 IIVRDRNRFHHFREGYCSCGDYW 771



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 181/350 (51%), Gaps = 11/350 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +H  +   G D+D F+   L+ +Y     V+ AR VFDK   R +  W+ + R+L+    
Sbjct: 116 IHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKE 175

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            +  LEL R MN                L A  A+      ++ GK +HA V+R+  N  
Sbjct: 176 FDMALELIREMNFMQVRPSEVAMVSMVNLFADTAN------MRMGKAMHAYVIRNSNNEH 229

Query: 222 VHIMTT--LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
           + + TT  L+DMYA+ G +  A  +F+ +  K VVSW+AMIA   R+    E  +LF  +
Sbjct: 230 MGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLF--I 287

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
            M+  ++ PN +TM+S++  C    AL+ GK +H YILR G    L + +ALV MY +C 
Sbjct: 288 RMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCS 347

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            +   + +FD    RDV+ W +++S+Y       +A  +F +M   GV P+ ++ VS+L 
Sbjct: 348 DIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS 407

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
            C+ AG ++ GK +   + KE +    + + A +VD+  +   +  A ++
Sbjct: 408 LCAVAGALDLGKWVHSYIDKERVEVDCILNTA-LVDMYAKCGDINAAGRL 456



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 144/287 (50%), Gaps = 10/287 (3%)

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           F    VLKAC       S  + GKEIH  VL+ G +  V +   L+ MY    CV YA  
Sbjct: 95  FMAPSVLKACGQ----VSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARL 150

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF +M  ++VVSWS MI   +RN     ALEL RE  M    + P+ V MVS++   A  
Sbjct: 151 VFDKMMERDVVSWSTMIRSLSRNKEFDMALELIRE--MNFMQVRPSEVAMVSMVNLFADT 208

Query: 304 AALEQGKMIHGYILRRGLDSIL--PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
           A +  GK +H Y++R   +  +  P  +AL+ MYA+CG L L + +F+ + ++ VVSW +
Sbjct: 209 ANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTA 268

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +I+         +  ++F  M    + P+ I+ +S++  C   G ++ GK L   + +  
Sbjct: 269 MIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNG 328

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
               S+     +VD+ G+ + +  A  + +  +      +W ++L +
Sbjct: 329 -FSVSLALATALVDMYGKCSDIRNARALFDSTQ-NRDVMIWTAMLSA 373



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 95/179 (53%), Gaps = 8/179 (4%)

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           SVL+AC  ++  + GK IHG++L++GLD  + V +AL+ MY  C  +E  + VFD M +R
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML- 413
           DVVSW+++I S   +     A+++ +EM +  V PS ++ VS++   +    +  GK + 
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 218

Query: 414 ---FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
                +   EHM  P+      ++D+  +   L  A ++   L  +     W +++  C
Sbjct: 219 AYVIRNSNNEHMGVPTT---TALLDMYAKCGHLGLARQLFNGL-TQKTVVSWTAMIAGC 273


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/586 (39%), Positives = 355/586 (60%), Gaps = 41/586 (6%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P  +TY  +L + +    L   + +H+ +   G D + F+   LI++Y     + +A  
Sbjct: 134 DPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACR 193

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           V D+   R +  WN+L       G+ ++ LE+ + M   G  ++ D  T   +L A V +
Sbjct: 194 VLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLG--LKPDAGTMASLLPA-VTN 250

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           +C                                       V +   +F ++A K++VSW
Sbjct: 251 TC------------------------------------LDNVSFVKEMFMKLANKSLVSW 274

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + MIA Y  N M  EA+++F +M  E H + P+++++ SVL AC  L+AL  G+ IH Y+
Sbjct: 275 NVMIAVYMNNSMPAEAVDIFLQM--EDHAVDPDAISIASVLPACGDLSALLLGRRIHEYV 332

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           +R+ L   L + +AL+ MYA+CG LE  + VFD M  RDVVSW S+IS+YG++G G  A+
Sbjct: 333 VRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAV 392

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F  M   G++P  I+FVSVL ACSHAGL++EG+  F+ M +E  I P +EH+ CMVDL
Sbjct: 393 SLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDL 452

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA +++EA   I+ + +EP  +VWG+LL +CR++ N+ +   A+ +LF+L P  +G Y
Sbjct: 453 LGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYY 512

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++YA A  W++V  V+ +++ +G++K+PG S  E+  ++++F++ D+ HPQ +Q++
Sbjct: 513 VLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIY 572

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L     +MKE GYVP+T   L+D++ E+KE  +  HSEKLA+AF ++NT+ G  IRIT
Sbjct: 573 EELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRIT 632

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH   K ISK   +EI +RD NRFHHF NGVCSCGDYW
Sbjct: 633 KNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 132/290 (45%), Gaps = 12/290 (4%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N LI    K G L +A  VL   P     ++  L+  C  +    DAL V   +   G  
Sbjct: 176 NGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLK 235

Query: 113 QDPFLVTKLINVYSH--FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
            D   +  L+   ++   D+V   + +F K   +++  WN +           E ++++ 
Sbjct: 236 PDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFL 295

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           +M      +  D  +   VL AC       S L  G+ IH  V+R      + +   LID
Sbjct: 296 QMEDHA--VDPDAISIASVLPAC----GDLSALLLGRRIHEYVVRKRLQPNLLLENALID 349

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MYA+ GC+ YA  VF QM  ++VVSW++MI+ Y  NG   +A+ LF    M+   L P+S
Sbjct: 350 MYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSR--MQDLGLNPDS 407

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           +  VSVL AC+    L++G+  + + L      I+P +   V M    G+
Sbjct: 408 IAFVSVLSACSHAGLLDEGR--YYFKLMTEECKIVPRIEHFVCMVDLLGR 455



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 134/273 (49%), Gaps = 13/273 (4%)

Query: 203 LKHGKEIHASV-LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
           +K+ K++H+ + + H  +    +   L+  YA  G       +F ++  KNVV ++ MI 
Sbjct: 51  IKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIR 110

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            Y  N +  +AL +F+ M    H + P+  T   VL+A +    L  G  IH  ++R GL
Sbjct: 111 SYVNNHLYSDALLVFKNM--AGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGL 168

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           D  + V + L++MY +CG L     V D M  RDVVSWNSL++    +G    A+++ KE
Sbjct: 169 DLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKE 228

Query: 382 MIYHGVSPSPISFVSVLGACSHAGL--VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           M   G+ P   +  S+L A ++  L  V   K +F  +  + ++  +V     M+ +   
Sbjct: 229 MELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNV-----MIAVYMN 283

Query: 440 ANKLEEAAKI---IEDLRIEPGPKVWGSLLGSC 469
            +   EA  I   +ED  ++P      S+L +C
Sbjct: 284 NSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC 316


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/617 (38%), Positives = 366/617 (59%), Gaps = 17/617 (2%)

Query: 53  NELIQSLCKQGNLRQALDVL-------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSH 105
           N +I  LC +G + +A ++         IE N    T   +L +C   + L     +H +
Sbjct: 204 NTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEV--TVLNILPACLEISQLRSLKELHGY 261

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
              +GF  D  +    +  Y+    +  A  VF     +T+  WNAL       G   + 
Sbjct: 262 SIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKA 321

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L LY +M  T +G+  D FT   +L A    S     L++GKE+H  VLRHG      I 
Sbjct: 322 LNLYIQM--TYSGLVPDWFTIGSLLLA----SAHLKSLRYGKEVHGFVLRHGLEIDSFIG 375

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
            +L+ +Y   G    A  +F  M  K+ VSW+AMI+ Y++NG+  +AL LFR+++  S  
Sbjct: 376 ISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLV--SDG 433

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
             P+ + +VSVL AC+  +AL  GK  H Y L+  L   + V  + + MYA+ G ++  +
Sbjct: 434 FQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESR 493

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VFD +  +D+ SWN++I++YGVHG G ++I++F+ M   G  P   +F+ +L  CSHAG
Sbjct: 494 SVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAG 553

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           LVEEG   F  M+  H I P +EHYAC++D+LGRA +L++A +++ ++  +P  +VW SL
Sbjct: 554 LVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSL 613

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           L  CR    +E+ +  +++L ELEP N  NYV L+++YA +  WD+V+RV+++++  GLQ
Sbjct: 614 LSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQ 673

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K  G S IE+  K++SFV+ D   PQ +++      L  +M + GY P T  VL+D+D E
Sbjct: 674 KDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEE 733

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           +K   + GHSEKLA+ FGL+NT+KG T+RI KNLR+C DCH+ +KF+S+   +EI++RD 
Sbjct: 734 KKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDN 793

Query: 646 NRFHHFRNGVCSCGDYW 662
            RFHHF++G+CSCGDYW
Sbjct: 794 KRFHHFKDGLCSCGDYW 810



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 200/411 (48%), Gaps = 15/411 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L  C     +   + +H      G  +D  +   L+++YS    + +A+ +
Sbjct: 132 PDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQML 191

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FDK  R+    WN +   L   G   E   L+R M      I  +  T   +L AC+   
Sbjct: 192 FDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQ-MQEDIEVNEVTVLNILPACLE-- 248

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
              S L+  KE+H   +RHG+     +    +  YA+ G ++ A  VF  M  K V SW+
Sbjct: 249 --ISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWN 306

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           A+I   A+NG   +AL L+ +M      L P+  T+ S+L A A L +L  GK +HG++L
Sbjct: 307 ALIGGCAQNGDPRKALNLYIQMTYSG--LVPDWFTIGSLLLASAHLKSLRYGKEVHGFVL 364

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R GL+    +  +L+++Y  CG+    + +FD M+++  VSWN++IS Y  +G    A+ 
Sbjct: 365 RHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALI 424

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC-MVDL 436
           +F++++  G  PS I+ VSVLGACS    +  GK       K  ++       AC  +D+
Sbjct: 425 LFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVF--VACSTIDM 482

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN----VELAERASK 483
             ++  ++E+  + + L+       W +++ +  +H +    +EL ER  K
Sbjct: 483 YAKSGCIKESRSVFDGLK-NKDLASWNAIIAAYGVHGDGEESIELFERMRK 532



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 7/229 (3%)

Query: 175 TGTGIRSDRFTYTYVLKACVAS-SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
           T T   +D FT+  V+KAC  S   G      G+ IH  V++ G    V +   LI MY 
Sbjct: 23  TDTEFNADNFTFPCVIKACTGSLDRGL-----GEVIHGMVIKMGLLLDVFVGNALIAMYG 77

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           +FG V  A  VF  M V+N+VSW+++I+ ++ NG + +  ++  EM+     L P+  T+
Sbjct: 78  KFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATL 137

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
           V+VL  CA    ++ G  IHG  ++ GL   + V ++LV MY++CG L   Q +FD  ++
Sbjct: 138 VTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNR 197

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEM-IYHGVSPSPISFVSVLGAC 401
           ++ VSWN++I      GY  +A  +F+EM +   +  + ++ +++L AC
Sbjct: 198 KNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/562 (38%), Positives = 350/562 (62%), Gaps = 8/562 (1%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            +H  +     D D ++   L+++Y+ +  +DDAR VF+   R+ + +WNAL    +  G
Sbjct: 326 QIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGG 385

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
              E L L+ RM   G+ I  +R T   VLK    S+     +    ++HA   + G+  
Sbjct: 386 CHGESLSLFCRMRKEGSDI--NRTTLAAVLK----STASLEAISDTTQVHALAEKIGFLS 439

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
             H++  LID Y +  C+ YA  VF + +  N++++++MI   ++     +A++LF EM+
Sbjct: 440 DSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEML 499

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
            +   L P+   + S+L ACA+L+A EQGK +H ++++R   + +   +ALV  YA+CG 
Sbjct: 500 RKG--LEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGS 557

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +E     F  +  + VVSW+++I     HG+G +A+ +F+ M+   ++P+ I+  SVL A
Sbjct: 558 IEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCA 617

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
           C+HAGLV+E K  F SM++   I  + EHY+CM+DLLGRA KL++A +++  +  E    
Sbjct: 618 CNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAA 677

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
           VWG+LL + R+H + EL + A+++LF LEP  +G +VLLA+ YA+A MWDEV +V++L++
Sbjct: 678 VWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMK 737

Query: 521 ARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY 580
              ++K P  S +E+K ++++F+  D+ HP+   ++A L  L   M + GYVP  +V L+
Sbjct: 738 DSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLH 797

Query: 581 DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEI 640
           D+D  EKE ++  HSE+LAVAF LI+T  G  IR+ KNLR+C DCH   KFISK  ++EI
Sbjct: 798 DVDKSEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREI 857

Query: 641 LVRDVNRFHHFRNGVCSCGDYW 662
           ++RD+NRFHHF +G CSCGDYW
Sbjct: 858 IIRDINRFHHFSDGACSCGDYW 879



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 207/439 (47%), Gaps = 13/439 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P +  +  ++ +CT    L     VH+ +   G+D+D F    L+++YS    +  A  V
Sbjct: 200 PNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALV 259

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F K  +  +  WNA      L G  +  LEL  +M    +G+  + FT + +LKAC  + 
Sbjct: 260 FGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMK--SSGLVPNVFTLSSILKACAGAG 317

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                   G++IH  +++   +   +I   L+DMYA++G +  A  VF  +  K+++ W+
Sbjct: 318 --AGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWN 375

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           A+I+  +  G   E+L LF  M  E  D+  N  T+ +VL++ A+L A+     +H    
Sbjct: 376 ALISGCSHGGCHGESLSLFCRMRKEGSDI--NRTTLAAVLKSTASLEAISDTTQVHALAE 433

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G  S   VV+ L+  Y +C  L     VF+     +++++ S+I++     +G  AI+
Sbjct: 434 KIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIK 493

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F EM+  G+ P P    S+L AC+     E+GK +   + K   +       A +V   
Sbjct: 494 LFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNA-LVYTY 552

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            +   +E+A      L  + G   W +++G    H + + A    +R+  ++   A N++
Sbjct: 553 AKCGSIEDADLAFSGLP-DKGVVSWSAMIGGLAQHGHGKRALDVFRRM--VDERIAPNHI 609

Query: 498 LLADVYAA---ADMWDEVK 513
            L  V  A   A + DE K
Sbjct: 610 TLTSVLCACNHAGLVDEAK 628



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 148/306 (48%), Gaps = 14/306 (4%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
            SL    ++H+HL  +G          L++ YS       AR VFD+T       W++L 
Sbjct: 18  QSLFLGAHIHAHLLKSGLLHA--FRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLV 75

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
            A +      E L  +R M   G  +R + F    VLK   A   G      G ++HA  
Sbjct: 76  TAYSNNALPREALAAFRAMRARG--VRCNEFALPIVLKC--APDAGL-----GVQVHAVA 126

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNVVSWSAMIACYARNGMAFEA 272
           +  G +G + +   L+ MY  FG V  A  VF + A  +N VSW+ M++ + +N    +A
Sbjct: 127 VSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDA 186

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
           +ELF EM+     + PN      V+ AC     LE G+ +H  ++R G D  +   +ALV
Sbjct: 187 VELFGEMVWSG--VRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALV 244

Query: 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI 392
            MY++ G + +   VF  + K DVVSWN+ IS   +HG+   A+++  +M   G+ P+  
Sbjct: 245 DMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVF 304

Query: 393 SFVSVL 398
           +  S+L
Sbjct: 305 TLSSIL 310


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/611 (36%), Positives = 359/611 (58%), Gaps = 32/611 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P +     ++ +C    ++  A  +  ++    F  D  L T +I++Y+    V+ AR +
Sbjct: 257 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 316

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+   + +  W+A+  A    G+G + L+L+R M    +G+  D+ T   +L AC+  +
Sbjct: 317 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMM--LSSGMLPDKITLASLLYACI--N 372

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
           C    L   +++HA    HG    + +   L+  Y+ +  +  A  +F  M V++ VSWS
Sbjct: 373 C--RNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWS 430

Query: 258 AMIACYARNGMAFEALELFREMI--------------------------MESHDLCPNSV 291
            M+  +A+ G        FRE+I                          M    + P+ V
Sbjct: 431 VMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKV 490

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
            MV+V+ ACA L A+ + + I  YI R+     + + +A++ M+A+CG +E  + +FD M
Sbjct: 491 AMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRM 550

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           ++++V+SW+++I++YG HG G KA+ +F  M+  G+ P+ I+ VS+L ACSHAGLVEEG 
Sbjct: 551 EEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGL 610

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
             F  M +++ +R  V+HY C+VDLLGRA +L+EA K+IE + +E    +WG+ LG+CR 
Sbjct: 611 RFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRT 670

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H +V LAE+A+  L EL+P N G+Y+LL+++YA A  W++V + + L+  R L+K+PG +
Sbjct: 671 HKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWT 730

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            IEV  K + F   D  HP+ ++++ +L +L  +++  GYVP T  VL+D+D E K  I+
Sbjct: 731 WIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGIL 790

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
             HSEKLA+AFGLI T +   IRI KNLR+C DCH+F K +S    + I+VRD NRFHHF
Sbjct: 791 YSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHF 850

Query: 652 RNGVCSCGDYW 662
           + G CSCGDYW
Sbjct: 851 KEGACSCGDYW 861



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 162/307 (52%), Gaps = 29/307 (9%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           +L+    VH+  + +G  ++  +  KLI  YS++ ++DDA  +FD    R    W+ +  
Sbjct: 93  NLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 152

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
                G        +R +     G R D +T  +V++AC                     
Sbjct: 153 GFAKVGDYINCFGTFREL--IRCGARPDNYTLPFVIRAC--------------------- 189

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
                 + ++   L+DMY +   +  A F+F +M  +++V+W+ MI  YA  G A E+L 
Sbjct: 190 ----RDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLV 245

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           LF +M  E   + P+ V MV+V+ ACA L A+ + ++I  YI R+     + + +A++ M
Sbjct: 246 LFEKMREEG--VVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDM 303

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           YA+CG +E  + +FD M++++V+SW+++I++YG HG G KA+ +F+ M+  G+ P  I+ 
Sbjct: 304 YAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITL 363

Query: 395 VSVLGAC 401
            S+L AC
Sbjct: 364 ASLLYAC 370



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 157/353 (44%), Gaps = 50/353 (14%)

Query: 55  LIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I +    G  R+ALD+    LS    P + T   LL +C +  +L+    VH+  + +G
Sbjct: 331 MIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHG 390

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNAL----------------FR 154
             Q+  +  KL++ YS++ ++DDA  +FD    R    W+ +                FR
Sbjct: 391 MLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFR 450

Query: 155 ------------ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
                        L   G   E L L+ +M     G+  D+     V+ AC         
Sbjct: 451 ELIRCGARPDNYTLPFCGNANESLVLFDKMR--EEGVVPDKVAMVTVVFACAK----LGA 504

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           +   + I   + R  +   V + T +IDM+A+ GCV  A  +F +M  KNV+SWSAMIA 
Sbjct: 505 MHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAA 564

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-----KMIHGYIL 317
           Y  +G   +AL+LF  M+     + PN +T+VS+L AC+    +E+G      M   Y +
Sbjct: 565 YGYHGQGRKALDLFPMMLRSG--ILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSV 622

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
           R  +     VV  L     R G+L+    + + M  ++D   W + + +   H
Sbjct: 623 RADVKHYTCVVDLL----GRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTH 671



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 129/270 (47%), Gaps = 25/270 (9%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L   +++HA    HG    + +   LI  Y+ +  +  A  +F  M V++ VSWS M+  
Sbjct: 94  LTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 153

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           +A+ G        FRE+I       P++ T+  V++AC  L  L+               
Sbjct: 154 FAKVGDYINCFGTFRELIRCGAR--PDNYTLPFVIRACRDLKNLQM-------------- 197

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
                  ALV MY +C ++E  + +FD M +RD+V+W  +I  Y   G   +++ +F++M
Sbjct: 198 -------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM 250

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              GV P  ++ V+V+ AC+  G + + +++ + ++++      +   A M+D+  +   
Sbjct: 251 REEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA-MIDMYAKCGC 309

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           +E A +I + +  E     W +++ +   H
Sbjct: 310 VESAREIFDRME-EKNVISWSAMIAAYGYH 338


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/587 (40%), Positives = 357/587 (60%), Gaps = 12/587 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L +C    +L     VH+     G D+   + T +++ Y    +V+ AR V
Sbjct: 117 PDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAV 176

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    R    WNA+       G   E + L+ RM   G  +     T   VL A  A  
Sbjct: 177 FDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDV-----TDASVLAALQA-- 229

Query: 198 CG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV-VS 255
           CG    L   + +H  ++R G +  V +   LI  YA+      A  VF+++  K   +S
Sbjct: 230 CGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRIS 289

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+AMI  + +N    +A  LF  M +E  ++ P+S T+VSV+ A A ++   Q + IHGY
Sbjct: 290 WNAMILGFTQNECPEDAERLFARMQLE--NVRPDSFTLVSVIPAVADISDPLQARWIHGY 347

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
            +R  LD  + V++AL+ MY++CG++ + + +FD    R V++WN++I  YG HG+G  A
Sbjct: 348 SIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAA 407

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           +++F+EM   G  P+  +F+SVL ACSHAGLV+EG+  F SM+K++ + P +EHY  MVD
Sbjct: 408 VELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVD 467

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495
           LLGRA KL+EA   I+++ IEPG  V+G++LG+C++H NVELAE +++ +FEL P     
Sbjct: 468 LLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVY 527

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           +VLLA++YA A MW +V RV+  +E +GLQK PG S I++K ++++F S    H   + +
Sbjct: 528 HVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDI 587

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
           +A L  L  E+K+ GYVP T  + +D++ + K +++  HSEKLA+A+GLI T+ G TI+I
Sbjct: 588 YARLAKLIEEIKDMGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQI 646

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C DCH+ TK IS    +EI++RD+ RFHHF++G CSCGDYW
Sbjct: 647 KKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 172/330 (52%), Gaps = 8/330 (2%)

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           T+T +LK C A +     L  G+ +HA +   G        T L +MY +      A  V
Sbjct: 18  TFTALLKLCAARAD----LATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F +M  ++ V+W+A++A YARNG+   A+E    M  E     P+SVT+VSVL ACA   
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           AL   + +H + LR GLD ++ V +A++  Y +CG +E  + VFD M  R+ VSWN++I 
Sbjct: 134 ALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMID 193

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
            Y  +G   +A+ +F  M+  GV  +  S ++ L AC   G ++E + + E + +  +  
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGL-S 252

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL-LGSCRIHCNVELAERASK 483
            +V     ++    +  + + AA++  +L  +     W ++ LG  +  C  E AER   
Sbjct: 253 SNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECP-EDAERLFA 311

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVK 513
           R+ +LE     ++ L++ + A AD+ D ++
Sbjct: 312 RM-QLENVRPDSFTLVSVIPAVADISDPLQ 340


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/614 (38%), Positives = 361/614 (58%), Gaps = 13/614 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+S  +    R  +++         +P   T+  +L +CT       +  +H  +  
Sbjct: 123 NAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIK 182

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF  D F+   L+ +Y+    +  A+ VFD    RTI  W ++       G+  E L +
Sbjct: 183 YGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRM 242

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M   G  ++ D      +L+A          L+ G+ IH  V++ G      ++ +L
Sbjct: 243 FSQMRNNG--VKPDWIALVSILRAYT----DVDDLEQGRSIHGFVIKMGLEDEPALLISL 296

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
              YA+ G V  A   F QM   NV+ W+AMI+ YA+NG A EA+ LF  MI  S ++ P
Sbjct: 297 TAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMI--SRNIKP 354

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +SVT+ S + A A + +LE  + +  Y+ +    S + V ++L+ MYA+CG +E  + VF
Sbjct: 355 DSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVF 414

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D    +DVV W+++I  YG+HG G +AI ++  M   GV P+ ++F+ +L AC+H+GLV+
Sbjct: 415 DRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVK 474

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG  LF  M K+  I P  EHY+C+VDLLGRA  L EA   I  + IEPG  VWG+LL +
Sbjct: 475 EGWELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSA 533

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C+I+  V L E A+ +LF L+P N G+YV L+++YA++ +WD V  V+ L+  +GL K  
Sbjct: 534 CKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDL 593

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S IE+  K+ +F   D+ HP  +++   L  L   +KE G+VP T+ VL+DL+ EEKE
Sbjct: 594 GYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKE 653

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSE++AVA+GLI+T+ G T+RITKNLR C +CHS  K ISK   +EI+VRD NRF
Sbjct: 654 ENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRF 713

Query: 649 HHFRNGVCSCGDYW 662
           HHF++G+CSCGDYW
Sbjct: 714 HHFKDGLCSCGDYW 727



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 210/392 (53%), Gaps = 17/392 (4%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  L+ + TH   L     +H+ L  +G   + FL+TKL+N  S+   +  AR +FD+  
Sbjct: 59  YASLIDNSTHKRHLD---QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFC 115

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
              +++WNA+ R+ +      + +E+YR M    TG+  D FT+ YVLKAC        L
Sbjct: 116 YPDVFMWNAIIRSYSRNNMYRDTVEMYRWMR--WTGVHPDGFTFPYVLKACT------EL 167

Query: 203 LKHGKE--IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           L  G    IH  ++++G+   V +   L+ +YA+ G +  A  VF  +  + +VSW+++I
Sbjct: 168 LDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSII 227

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           + YA+NG A EAL +F +  M ++ + P+ + +VS+L+A   +  LEQG+ IHG++++ G
Sbjct: 228 SGYAQNGKAVEALRMFSQ--MRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMG 285

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           L+    ++ +L   YA+CG + + +  FD M   +V+ WN++IS Y  +G+  +A+ +F 
Sbjct: 286 LEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFH 345

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
            MI   + P  ++  S + A +  G +E  + + + + K +     +     ++D+  + 
Sbjct: 346 YMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNY-GSDIFVNTSLIDMYAKC 404

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
             +E A ++  D   +    +W +++    +H
Sbjct: 405 GSVEFARRVF-DRNSDKDVVMWSAMIMGYGLH 435


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/553 (40%), Positives = 352/553 (63%), Gaps = 8/553 (1%)

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           GF     L+T LI+++S    V+ AR +F + R++ +   NA+    T  G  E+ + L+
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           + +  +G  + S     T V    V S  G S L +   IH   ++ G      + T L 
Sbjct: 121 KELLSSGERVSSS----TIVGLIPVYSPFGHSYLCNC--IHGFCVKLGIVSHSSVSTALT 174

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
            +Y R   +++A  +F + A K + SW+AMI+   +NG+   A+ LF+   M+ +++ PN
Sbjct: 175 TVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQ--TMQKNNVNPN 232

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
            VT+ S+L ACA + AL  G+ +H  I     +S + V +AL+ MYA+CG + + + +FD
Sbjct: 233 PVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFD 292

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
            M +++ V+WN++IS YG+HG+G +A+++F +M+   V P+ ++F+SVL ACSHAGLV+E
Sbjct: 293 LMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKE 352

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           G  +F +M  +    P  EHYACMVD+LGRA +L++A + I+ + +EPGP VWG+LLG+C
Sbjct: 353 GDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGAC 412

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
            IH +  LA  AS++LFEL+P N G YVL++++Y+    + +   V+++ + + L K PG
Sbjct: 413 MIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPG 472

Query: 530 RSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKER 589
            + IE+ +  + F S D+ HPQ + ++A L  L+ +M E G+  +T  VL+DL+ EEKE 
Sbjct: 473 CTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKEL 532

Query: 590 IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
            +  HSEKLA+AFGLI+T  G  IRI KNLR+C DCH++TKF+SK   + I+VRD NRFH
Sbjct: 533 TMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFH 592

Query: 650 HFRNGVCSCGDYW 662
           HF++G+CSCGDYW
Sbjct: 593 HFKDGLCSCGDYW 605



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 149/297 (50%), Gaps = 8/297 (2%)

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
           G G R D  T   VL A          LK G +I    ++ G+   V ++T LI ++++ 
Sbjct: 24  GNGPRFDLTTVIAVLPAVAE----LQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSKC 79

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G V  A  +F ++  K+++S +AMI+ +  NG   +++ LF+E++     +  +S T+V 
Sbjct: 80  GEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERV--SSSTIVG 137

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           ++   +          IHG+ ++ G+ S   V +AL T+Y R  ++   + +FD   ++ 
Sbjct: 138 LIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKT 197

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           + SWN++IS    +G    AI +F+ M  + V+P+P++  S+L AC+  G +  G+ +  
Sbjct: 198 LASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWV-H 256

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           S+ K +    +V     ++D+  +   +  A ++  DL  E     W +++    +H
Sbjct: 257 SLIKSNRFESNVYVSTALIDMYAKCGSITVARELF-DLMPEKNEVTWNAMISGYGLH 312



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 155/350 (44%), Gaps = 59/350 (16%)

Query: 55  LIQSLCKQGNLRQALDVLSIEP--NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           L + L   G    +  ++ + P  +P  H+Y   L +C H   +   +  HS ++     
Sbjct: 119 LFKELLSSGERVSSSTIVGLIPVYSPFGHSY---LCNCIHGFCVKLGIVSHSSVS----- 170

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
                 T L  VY   + +  AR +FD++  +T+  WNA+    T  G  +  + L++ M
Sbjct: 171 ------TALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTM 224

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                 +  +  T T +L AC         L  G+ +H+ +  + +   V++ T LIDMY
Sbjct: 225 Q--KNNVNPNPVTVTSILSACAQ----IGALSLGEWVHSLIKSNRFESNVYVSTALIDMY 278

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           A+ G +  A  +F  M  KN V+W+AMI+ Y  +G   EAL+LF +M+  S  + P  +T
Sbjct: 279 AKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDML--SSSVKPTGLT 336

Query: 293 MVSVLQACAALAALEQGKMI-HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
            +SVL AC+    +++G  I H  +   G + +    + +V +  R G+L+         
Sbjct: 337 FLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLK--------- 387

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
                                 KA++  K M    V P P  + ++LGAC
Sbjct: 388 ----------------------KALEFIKAM---PVEPGPPVWGALLGAC 412



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 87/150 (58%), Gaps = 7/150 (4%)

Query: 259 MIACYARNGMAFEALELFREMIMES---HDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           MI+ + +N    +++ +F +M++ +    DL     T+++VL A A L  L+ G  I   
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDL----TTVIAVLPAVAELQELKLGMQILCL 56

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
            ++ G  S + +++ L++++++CG++E+ + +F  + K+D++S N++IS +  +G    +
Sbjct: 57  AIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDS 116

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
           +++FKE++  G   S  + V ++   S  G
Sbjct: 117 VRLFKELLSSGERVSSSTIVGLIPVYSPFG 146


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/639 (36%), Positives = 355/639 (55%), Gaps = 36/639 (5%)

Query: 54  ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           E I  LC Q  LR+A+ +L     P   TY  L+  C+   +L +   VH H+  +GF  
Sbjct: 59  EAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVP 118

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
              +  +L+ +Y+   S+ DAR VFD+   R +  WN +       G  EE  +L+  M 
Sbjct: 119 GIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMT 178

Query: 174 GTG--------TGI----------------------RSDRFTYTYVLKACVASSCGFSLL 203
                      TG                       R + FT +  + A  A  C    +
Sbjct: 179 EKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKC----I 234

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
           + GKEIH  ++R G +    + ++L+DMY + GC+  A  +F ++  K+VVSW++MI  Y
Sbjct: 235 RRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRY 294

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
            ++    E   LF E++       PN  T   VL ACA L   E GK +HGY+ R G D 
Sbjct: 295 FKSSRWREGFSLFSELVGSCER--PNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDP 352

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
                S+LV MY +CG +E  + V D   K D+VSW SLI     +G   +A++ F  ++
Sbjct: 353 YSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLL 412

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
             G  P  ++FV+VL AC+HAGLVE+G   F S+ ++H +  + +HY C+VDLL R+ + 
Sbjct: 413 KSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRF 472

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
           E+   +I ++ ++P   +W S+LG C  + N++LAE A++ LF++EP N   YV +A++Y
Sbjct: 473 EQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIY 532

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           AAA  W+E  ++++ ++  G+ K PG S  E+KRK + F++ D  HP + Q+   L  L 
Sbjct: 533 AAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELR 592

Query: 564 AEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCE 623
            +MKE+GYVP T +VL+D++ E+KE  ++ HSEKLAVAF +++T +G  I++ KNLR C 
Sbjct: 593 KKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCV 652

Query: 624 DCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           DCH   KFIS    ++I VRD  RFH F NG CSCGDYW
Sbjct: 653 DCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/568 (39%), Positives = 334/568 (58%), Gaps = 47/568 (8%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           ++S  L +H+ L  +G D  P L  KL   Y+    +D +  +F +T+  +++ W A+  
Sbjct: 42  TISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIH 101

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
              L G      +L+  M                  K+ V+                   
Sbjct: 102 GHALRGDVVSAQQLFDTMPE----------------KSLVS------------------- 126

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
                     +T ++  YA+ G +  A  +F  M  ++ V W+ MI  Y +NGM  EAL 
Sbjct: 127 ----------LTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALV 176

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           LFR M+       PN VT++SVL AC  L ALE G+ +H YI   G+   + V +ALV M
Sbjct: 177 LFRRMLKAKAK--PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDM 234

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y++CG LE  + VFD +D +DVV+WNS+I  Y +HG+  +A+Q+FK M   G+ P+ I+F
Sbjct: 235 YSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITF 294

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           + +L AC H+G V EG  +F  M+ E+ I P +EHY CMV+LLGRA  +E+A ++++++ 
Sbjct: 295 IGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMN 354

Query: 455 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514
           IEP P +WG+LLG+CR+H  + L E+  + L +    N+G Y+LL+++YAA   WD V R
Sbjct: 355 IEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVAR 414

Query: 515 VKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQ 574
           ++ +++  G++K PG S IEV  K++ F++    HP+ ++++ +L  ++  +K  GY PQ
Sbjct: 415 LRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQ 474

Query: 575 TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
           T +VL+D+   EKER +  HSEKLA+AFGLINT  G TI+I KNLR+C DCH  TK ISK
Sbjct: 475 TDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISK 534

Query: 635 FANKEILVRDVNRFHHFRNGVCSCGDYW 662
              ++I+VRD NRFHHF NG CSCGDYW
Sbjct: 535 ITGRKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 149/319 (46%), Gaps = 14/319 (4%)

Query: 54  ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           +L +S    G L  ++ +     NP+   +  ++    H ++L   +     L D   ++
Sbjct: 67  KLQRSYASLGRLDYSVALFGRTQNPSVFFWTAII----HGHALRGDVVSAQQLFDTMPEK 122

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
               +T ++  Y+    +D AR +FD    R    WN +    T  G   E L L+RRM 
Sbjct: 123 SLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM- 181

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
                 + +  T   VL AC         L+ G+ +H+ +  +G    VH+ T L+DMY+
Sbjct: 182 -LKAKAKPNEVTVLSVLSACGQ----LGALESGRWVHSYIENNGIQFNVHVGTALVDMYS 236

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G +  A  VF ++  K+VV+W++MI  YA +G + EAL+LF+ M      L P ++T 
Sbjct: 237 KCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMG--LHPTNITF 294

Query: 294 VSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           + +L AC     + +G  I   +    G++  +     +V +  R G +E    +  +M+
Sbjct: 295 IGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMN 354

Query: 353 -KRDVVSWNSLISSYGVHG 370
            + D V W +L+ +  +HG
Sbjct: 355 IEPDPVLWGTLLGACRLHG 373


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/615 (37%), Positives = 363/615 (59%), Gaps = 13/615 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS-IEPNPTQHTYELLLL----SCTHHNSLSDALNVHSHLT 107
           N +I    K+G+ R   ++L  ++        E+ +L    +C+  + L     +H +  
Sbjct: 369 NTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAF 428

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            +GF +D  +    +  Y+   S+D A  VF     +T+  WNAL  A    G   + L+
Sbjct: 429 RHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLD 488

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+  M    +G+  DRFT   +L AC         L+ GKEIH  +LR+G      I  +
Sbjct: 489 LFLVM--MDSGMDPDRFTIGSLLLACAR----LKFLRCGKEIHGFMLRNGLELDEFIGIS 542

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+ +Y +   ++    +F +M  K++V W+ MI  +++N +  EAL+ FR+M+  S  + 
Sbjct: 543 LMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQML--SGGIK 600

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P  + +  VL AC+ ++AL  GK +H + L+  L     V  AL+ MYA+CG +E  Q +
Sbjct: 601 PQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNI 660

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           FD ++++D   WN +I+ YG+HG+G KAI++F+ M   G  P   +F+ VL AC+HAGLV
Sbjct: 661 FDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLV 720

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
            EG      M+  + ++P +EHYAC+VD+LGRA +L EA K++ ++  EP   +W SLL 
Sbjct: 721 TEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLS 780

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           SCR + ++E+ E  SK+L ELEP  A NYVLL+++YA    WDEV++V++ ++  GL K 
Sbjct: 781 SCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKD 840

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
            G S IE+   +Y F+  D    + +++    I L  ++ + GY P T  VL++L+ E K
Sbjct: 841 AGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGK 900

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
            +I+  HSEKLA++FGL+NT+KG T+R+ KNLR+C DCH+  K +SK   ++I+VRD  R
Sbjct: 901 IKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKR 960

Query: 648 FHHFRNGVCSCGDYW 662
           FHHF+NG+C+CGD+W
Sbjct: 961 FHHFKNGLCTCGDFW 975



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/402 (29%), Positives = 198/402 (49%), Gaps = 35/402 (8%)

Query: 18  HTNSIAHLPPKPSSVCCCVSLNSSTTP-TSLSSRNKN-----ELIQSLCKQGNLRQALDV 71
           H NS    PP              T P +SL+S  K      + + +LC  GNL  AL++
Sbjct: 29  HNNSNNLFPP-------------FTVPKSSLTSHTKTHSPILQRLHNLCDSGNLNDALNL 75

Query: 72  L-SIEPNPT-------QHTYELLLLSCTHHNSLSDALNVHSHLT-DNGFDQDPFLVTKLI 122
           L S   N T       +    +LL +C HH ++     VH+ ++  +    D  L T++I
Sbjct: 76  LHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRII 135

Query: 123 NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSD 182
            +YS   S  D+R VFD  + + ++++NAL    +      + + L+  +  + T +  D
Sbjct: 136 AMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELL-SATDLAPD 194

Query: 183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG 242
            FT   V KAC     G + ++ G+ +HA  L+ G      +   LI MY + G V  A 
Sbjct: 195 NFTLPCVAKACA----GVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAV 250

Query: 243 FVFSQMAVKNVVSWSAMIACYARNGMAFEALELF-REMIMESHDLCPNSVTMVSVLQACA 301
            VF  M  +N+VSW++++   + NG   E   +F R +I E   L P+  TMV+V+ ACA
Sbjct: 251 KVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACA 310

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
           A+  +  G ++HG   + G+   + V ++LV MY++CG L   + +FD    ++VVSWN+
Sbjct: 311 AVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNT 370

Query: 362 LISSYGVHGYGGKAIQIFKEMIY-HGVSPSPISFVSVLGACS 402
           +I  Y   G      ++ +EM     V  + ++ ++VL ACS
Sbjct: 371 IIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/600 (40%), Positives = 362/600 (60%), Gaps = 19/600 (3%)

Query: 74  IEPNPTQH------TYELLLLSCTHH-NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS 126
           I+ +P+QH      TY   LLSC     SL +   + +         D  ++TKLIN  +
Sbjct: 10  IQQSPSQHSSYYNTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCT 69

Query: 127 H---FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
                 S+D A  +F+   +  I ++N++FR  + +    + + L+  +      +  D 
Sbjct: 70  QNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLF--IKALNYNLLPDD 127

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           +T+  +LKACV +       + GK++H   ++ G N   ++  TLI+MYA    V  A  
Sbjct: 128 YTFPSLLKACVVAKA----FQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQR 183

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF ++    VVS++A+I  YAR+    EAL LFR++  ++  L PN VT++SVL +CA L
Sbjct: 184 VFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQL--QARKLKPNDVTVLSVLSSCALL 241

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
            AL+ GK IH Y+ + GLD  + V +AL+ MYA+CG L+    VF+ M  RD  +W+++I
Sbjct: 242 GALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMI 301

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
            +Y +HG G   + +F+EM    V P  I+F+ +L ACSH GLV+EG   F SM + + I
Sbjct: 302 VAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGI 361

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
            P ++HY CMVDLLGRA  L EA K I++L I+P P +W +LL SC  H N+ELA++   
Sbjct: 362 IPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMN 421

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
           ++ EL+ ++ G+YV+L+++ A A  W++V  +++L+  +G  K+PG S IEV   ++ F 
Sbjct: 422 QILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFF 481

Query: 544 SVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY-DLDAEEKERIVLGHSEKLAVAF 602
           S D  H     LH  L  L  E+K  GYVP T +V++ D++ EEKE  +  HSEKLA++F
Sbjct: 482 SGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISF 541

Query: 603 GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           GL+NT  G TIR+ KNLR+C DCHS  K IS   ++EI++RDV RFHHF++G CSCGDYW
Sbjct: 542 GLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/586 (40%), Positives = 345/586 (58%), Gaps = 8/586 (1%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P   T+  +L +C         + +HS +   G + D F+   LIN+Y+    +D+A  
Sbjct: 105 SPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFK 164

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD    +    W A        G+  E ++++RR+     G+R D F+   VL AC  +
Sbjct: 165 VFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRL--LEMGLRPDSFSLVEVLSACKRT 222

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+ G+ I   +  +G    V + T L+D Y + G +  A  VF  M  KN+VSW
Sbjct: 223 G----DLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSW 278

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           S+MI  YA NG+  EAL+LF +M+ E   L P+   MV VL +CA L ALE G      I
Sbjct: 279 SSMIQGYASNGLPKEALDLFFKMLNEG--LKPDCYAMVGVLCSCARLGALELGDWASNLI 336

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
                     + +AL+ MYA+CG+++    VF  M K+D V WN+ IS   + G+   A+
Sbjct: 337 NGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDAL 396

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F +M   G+ P   +FV +L AC+HAGLVEEG+  F SM     + P +EHY CMVDL
Sbjct: 397 GLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDL 456

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA  L+EA ++I+ + +E    VWG+LLG CR+H + +L E   K+L  LEP ++GNY
Sbjct: 457 LGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNY 516

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++YAA+  W+E  +++ ++  RG++K+PG S IEV   ++ F+  D  HP  E+++
Sbjct: 517 VLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIY 576

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
           A L  L+ ++K  GYVP T  VL+D++ EEKE  +  HSEKLAVAFGLI+T+  + I + 
Sbjct: 577 AKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVV 636

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH   K IS+ A +EI+VRD NRFH F +G+CSC DYW
Sbjct: 637 KNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 188/356 (52%), Gaps = 13/356 (3%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           ++H+ L   G D+D +L+ K++    +F + + +  + D+T+   I+++N + R L L  
Sbjct: 28  HIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLND 87

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC--VASSCGFSLLKHGKEIHASVLRHGY 218
             +E +E+Y  M     G+  D FT+ +VLKAC  V  S      + G ++H+ V++ G 
Sbjct: 88  CFQESIEIYHSMR--KEGLSPDSFTFPFVLKACARVLDS------ELGVKMHSLVVKAGC 139

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
                +  +LI++Y + G +  A  VF  +  KN  SW+A I+ Y   G   EA+++FR 
Sbjct: 140 EADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRR 199

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           ++     L P+S ++V VL AC     L  G+ I  YI   G+   + V +ALV  Y +C
Sbjct: 200 LL--EMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKC 257

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G +E  + VFD M ++++VSW+S+I  Y  +G   +A+ +F +M+  G+ P   + V VL
Sbjct: 258 GNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVL 317

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
            +C+  G +E G      +     +  SV   A ++D+  +  +++ A ++   +R
Sbjct: 318 CSCARLGALELGDWASNLINGNEFLDNSVLGTA-LIDMYAKCGRMDRAWEVFRGMR 372



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 135/268 (50%), Gaps = 4/268 (1%)

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
           GFS LKH K IHA++LR G +   +++  ++     FG   Y+  +  Q    N+  ++ 
Sbjct: 19  GFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNT 78

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           MI     N    E++E++  M  E   L P+S T   VL+ACA +   E G  +H  +++
Sbjct: 79  MIRGLVLNDCFQESIEIYHSMRKEG--LSPDSFTFPFVLKACARVLDSELGVKMHSLVVK 136

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
            G ++   V  +L+ +Y +CG ++    VFD +  ++  SW + IS Y   G   +AI +
Sbjct: 137 AGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDM 196

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
           F+ ++  G+ P   S V VL AC   G +  G+ + E + +  M+R +V     +VD  G
Sbjct: 197 FRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVR-NVFVATALVDFYG 255

Query: 439 RANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           +   +E A  + + + +E     W S++
Sbjct: 256 KCGNMERARSVFDGM-LEKNIVSWSSMI 282



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 177/394 (44%), Gaps = 53/394 (13%)

Query: 63  GNLRQALD----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV 118
           G  R+A+D    +L +   P   +   +L +C     L     +  ++T+NG  ++ F+ 
Sbjct: 188 GKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVA 247

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           T L++ Y    +++ AR VFD    + I  W+++ +     G  +E L+L+ +M     G
Sbjct: 248 TALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKM--LNEG 305

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH--IMTTLIDMYARFG 236
           ++ D +    VL +C         L+ G    AS L +G   + +  + T LIDMYA+ G
Sbjct: 306 LKPDCYAMVGVLCSCAR----LGALELGD--WASNLINGNEFLDNSVLGTALIDMYAKCG 359

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            +  A  VF  M  K+ V W+A I+  A +G   +AL LF +  ME   + P+  T V +
Sbjct: 360 RMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQ--MEKSGIKPDRNTFVGL 417

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           L AC     +E+G        RR  +S+                    +CVF      ++
Sbjct: 418 LCACTHAGLVEEG--------RRYFNSM--------------------ECVFTLTP--EI 447

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
             +  ++   G  G   +A Q+ K M    +  + I + ++LG C    L  + +++   
Sbjct: 448 EHYGCMVDLLGRAGCLDEAHQLIKSM---PMEANAIVWGALLGGCR---LHRDTQLVEVV 501

Query: 417 MRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKI 449
           ++K   + P    +Y  + ++   ++K EEAAKI
Sbjct: 502 LKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKI 535


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/636 (36%), Positives = 371/636 (58%), Gaps = 36/636 (5%)

Query: 55  LIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I+     G LR +L       S   +P +H +  LL + T     + A ++H+ +   G
Sbjct: 47  IIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLG 106

Query: 111 FDQDPFLVTKLINVYSHFD----------------------SVDDARHVFDKTRRRTIYV 148
           F  D +    L+N+YS F                        +D  R +FD+   R +  
Sbjct: 107 FHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVS 166

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           WN +       G  EE L + + M      +R D FT + +L      +     +  GKE
Sbjct: 167 WNTVIAGNAQNGMYEEALNMVKEMGKEN--LRPDSFTLSSILPIFTEHAN----VTKGKE 220

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           IH   +RHG++  V I ++LIDMYA+   V  +   F  ++ ++ +SW+++IA   +NG 
Sbjct: 221 IHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGR 280

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
             + L  FR M+ E   + P  V+  SV+ ACA L AL  GK +H YI+R G D    + 
Sbjct: 281 FDQGLGFFRRMLKEK--VKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIA 338

Query: 329 SALVTMYARCGKLELGQCVFDHMD--KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           S+L+ MYA+CG +++ + +F+ ++   RD+VSW ++I    +HG+   A+ +F+EM+  G
Sbjct: 339 SSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDG 398

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           V P  ++F++VL ACSHAGLV+EG   F SM+++  + P +EHYA + DLLGRA +LEEA
Sbjct: 399 VKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEA 458

Query: 447 AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
              I ++  EP   VW +LL +CR H N+ELAE+   ++  ++P N G +V+++++Y+AA
Sbjct: 459 YDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAA 518

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
             W +  +++  +   GL+K P  S IEV  K+++F++ D+ HP +++++  L  L  +M
Sbjct: 519 QRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQM 578

Query: 567 KEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
           +++GYV  T  VL+D+D E K  ++  HSE+LA+AFG+I+T+ G TIR+ KN+R+C DCH
Sbjct: 579 EKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCH 638

Query: 627 SFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +  KF++K   +EI+VRD +RFHHF+NG CSCGDYW
Sbjct: 639 TAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 26/253 (10%)

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
           ++A  V +  A  + ++W  +I CYA +G+   +L  F   ++ S  + P+     S+L+
Sbjct: 27  LHAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFN--LLRSFGISPDRHLFPSLLR 84

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR--------------------- 337
           A          + +H  ++R G    L   +AL+ MY++                     
Sbjct: 85  ASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNK 144

Query: 338 -CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
              K++  + +FD M  RDVVSWN++I+    +G   +A+ + KEM    + P   +  S
Sbjct: 145 YSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSS 204

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           +L   +    V +GK +       H     V   + ++D+  +  ++E +      L   
Sbjct: 205 ILPIFTEHANVTKGKEI-HGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNR 263

Query: 457 PGPKVWGSLLGSC 469
                W S++  C
Sbjct: 264 DAIS-WNSIIAGC 275


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/631 (37%), Positives = 362/631 (57%), Gaps = 46/631 (7%)

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
           NLR A++  +++    + ++  LL + +  ++ +  L +H   +  GF  DPF+ T LI 
Sbjct: 110 NLR-AINAFALD----RFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIA 164

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +Y+    + DAR +FDK        WN +       G  ++ L L+  M       RS  
Sbjct: 165 MYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDM-------RSSD 217

Query: 184 FTYTYVLKACVASSCGFS-LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA--------- 233
                V+   V S+CG +  L +G+ IH  V  +GY    H+ T LI+MYA         
Sbjct: 218 MKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLAR 277

Query: 234 ----------------------RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
                                 + G V  A F+F QM  +++V WSAMI+ YA +    E
Sbjct: 278 KIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQE 337

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           AL+LF EM+ +     P+ +TM+SV+ AC+ + AL Q   IH Y+ R G    L V +AL
Sbjct: 338 ALKLFDEMLQKRS--VPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNAL 395

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MYA+CG L   + VF++M +++V+SW+S+I+++ +HG    AI++F+ M    + P+ 
Sbjct: 396 IDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNG 455

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           ++F+ VL AC HAGLVEEG+ LF SM  EH I P+ EHY CMVDL  RAN L +A ++IE
Sbjct: 456 VTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIE 515

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
            +   P   +WGSL+ +C++H   EL E A+KRL ELEP + G  V+L+++YA    W++
Sbjct: 516 TMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWND 575

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGY 571
           V  +++ +  +G+ K    SRIE+  +++ F+  D +H Q ++++  L  + +++K  GY
Sbjct: 576 VGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGY 635

Query: 572 VPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKF 631
            P T  +L DL+ E+K+ +VL HSEKLAV +GLI+      IRI KNLR+CEDCHSF K 
Sbjct: 636 KPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKL 695

Query: 632 ISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +SK    EI+VRD  RFHH   G+CSC DYW
Sbjct: 696 VSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 182/392 (46%), Gaps = 50/392 (12%)

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF +      +  N L R L+ +   E+ + LY  +         DRF++  +LKA    
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAI-NAFALDRFSFPSLLKAV--- 131

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
               S   HG EIH    + G+     I T LI MYA    +M A  +F +M   + V+W
Sbjct: 132 -SKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAW 190

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + +I  Y +NG   +AL LF +M   S D+ P+SV + +VL AC     L  G+ IH ++
Sbjct: 191 NMIIDGYCQNGHYDDALRLFEDM--RSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFV 248

Query: 317 LRRG--LDSILPVVSALVTMYARCGKLELGQ----------------------------- 345
              G  +DS L   +AL+ MYA CG ++L +                             
Sbjct: 249 KDNGYAIDSHLQ--TALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKD 306

Query: 346 --CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              +FD M +RD+V W+++IS Y       +A+++F EM+     P  I+ +SV+ ACSH
Sbjct: 307 ARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSH 366

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV-- 461
            G + +   +   + +    R    + A ++D+  +   L +A ++ E++   P   V  
Sbjct: 367 VGALAQANWIHTYVDRSGFGRALSVNNA-LIDMYAKCGNLVKAREVFENM---PRKNVIS 422

Query: 462 WGSLLGSCRIHCNVELAERASKRLFE--LEPT 491
           W S++ +  +H N + A +  +R+ E  +EP 
Sbjct: 423 WSSMINAFAMHGNADSAIKLFRRMKEVNIEPN 454



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 161/355 (45%), Gaps = 45/355 (12%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I   C+ G+   AL    D+ S +  P       +L +C H  +LS    +H  + D
Sbjct: 191 NMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKD 250

Query: 109 NGFDQDPFLVTKLINVYSHFDSVD-------------------------------DARHV 137
           NG+  D  L T LIN+Y++  ++D                               DAR +
Sbjct: 251 NGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFI 310

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+   R +  W+A+      + + +E L+L+  M    +    D+ T   V+ AC  S 
Sbjct: 311 FDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRS--VPDQITMLSVISAC--SH 366

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G   L     IH  V R G+   + +   LIDMYA+ G ++ A  VF  M  KNV+SWS
Sbjct: 367 VG--ALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWS 424

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYI 316
           +MI  +A +G A  A++LFR   M+  ++ PN VT + VL AC     +E+G K+    I
Sbjct: 425 SMINAFAMHGNADSAIKLFRR--MKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMI 482

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
              G+         +V +Y R   L     + + M    +V+ W SL+S+  VHG
Sbjct: 483 NEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHG 537


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/660 (38%), Positives = 374/660 (56%), Gaps = 33/660 (5%)

Query: 9   TPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQA 68
           +P LL  PY   S+  L P+P                 LS+   N L+++    G+   A
Sbjct: 62  SPTLL--PYAV-SLFRLGPRPP----------------LSTPCYNVLMRAFLHAGHPEDA 102

Query: 69  LDVL-----SIEPNPT-QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLI 122
           L +      +    P  QHT    L SC+   +L     V ++    G   D F+++ LI
Sbjct: 103 LHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLI 162

Query: 123 NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSD 182
           ++Y+    V  AR VFD      + +WNA+  A    G   EV+E+++ M     G+  D
Sbjct: 163 HMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGM--LEVGVAFD 220

Query: 183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG 242
             T   V+ AC     G +  K GK +   V   G      ++T L+DMYA+ G +  A 
Sbjct: 221 EVTLVSVVTAC--GRIGDA--KLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKAR 276

Query: 243 FVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA 302
            +F  M  ++VV+WSAMI+ Y +     EAL LF EM +   +  PN VTMVSVL ACA 
Sbjct: 277 RLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVE--PNDVTMVSVLSACAV 334

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           L ALE GK +H Y+ R+ L     + +ALV  YA+CG ++     F+ M  ++  +W +L
Sbjct: 335 LGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTAL 394

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           I     +G G +A+++F  M   G+ P+ ++F+ VL ACSH+ LVEEG+  F+SM +++ 
Sbjct: 395 IKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYG 454

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERAS 482
           I+P VEHY CMVDLLGRA  ++EA + I  + IEP   +W +LL SC +H NV + E A 
Sbjct: 455 IKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEAL 514

Query: 483 KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSF 542
           K++  L P+++G+YVLL+++YA+A  W +   V++ ++ RG++K PG S IE+   ++ F
Sbjct: 515 KQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEF 574

Query: 543 VSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAF 602
            + D  HP+  +++  +  +   +K  GYVP T  V  +++  EKE  V  HSEKLA+AF
Sbjct: 575 FAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAF 634

Query: 603 GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           GL+    G TIR++KNLR+C DCHS TK ISK  ++EI+VRD N FHHF++G CSC DYW
Sbjct: 635 GLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/665 (36%), Positives = 373/665 (56%), Gaps = 57/665 (8%)

Query: 53  NELIQSLCKQGNLRQALDVLS-----IEPNPTQHTYELL-----LLSCTHHNSLSDALNV 102
           N ++ +  K  N   ALD+ S     +   PT    +++     L +C    ++     V
Sbjct: 228 NSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEV 287

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
           H +   NG   D F+   LI+ Y+    +++A  VF+    + +  WNA+    + +G  
Sbjct: 288 HGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNF 347

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVL-----KAC------------------------ 193
           E   EL++ M      I  D  T+T V+     + C                        
Sbjct: 348 EAAFELFKNMRKEN--IPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 405

Query: 194 -VASSCG-FSLLKHGKEIHASVLRH----------GYNGIVHIMTTLIDMYARFGCVMYA 241
            V S+C        G EIHA  L++          G +  + +   LIDMY++      A
Sbjct: 406 SVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 465

Query: 242 GFVFSQMAV--KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
             +F  + +  +NVV+W+ MI  +A+ G + +AL+LF EMI E + + PN+ T+  +L A
Sbjct: 466 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 525

Query: 300 CAALAALEQGKMIHGYILR--RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           CA LAA+  GK IH Y+LR  R   S   V + L+ MY++CG ++  + VFD M ++  +
Sbjct: 526 CAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAI 585

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           SW S+++ YG+HG G +A+ IF +M   G  P  I+F+ VL ACSH G+V++G   F+SM
Sbjct: 586 SWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSM 645

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
             ++ + P  EHYAC +DLL R+ +L++A + ++D+ +EP   VW +LL +CR+H NVEL
Sbjct: 646 SADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVEL 705

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
           AE A  +L E+   N G+Y L++++YA A  W +V R++ L++  G++K PG S ++ ++
Sbjct: 706 AEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQK 765

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
              SF   D  HP   Q++ALL +L   +K  GYVP+T   L+D+D EEK  +++ HSEK
Sbjct: 766 GTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEK 825

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+A+GL+ TS G  IRITKNLR+C DCHS   +ISK  + EI+VRD +RFHHF+NG CS
Sbjct: 826 LALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCS 885

Query: 658 CGDYW 662
           CG YW
Sbjct: 886 CGGYW 890



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 224/481 (46%), Gaps = 68/481 (14%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI+   KQG L  A++V    L     P   T   +L +C    S       H  +  
Sbjct: 124 NLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICC 183

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI---YVWNALFRALTLAGRGEEV 165
           NGF+ + F+   L+ +YS   S+++A  +FD+  +R I     WN++  A   +      
Sbjct: 184 NGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTA 243

Query: 166 LELYRRM----NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
           L+L+ +M    +   T  RSD  +   +L AC +       +   KE+H + +R+G    
Sbjct: 244 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGS----LKAVPQTKEVHGNAIRNGTFPD 299

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG---MAF-------- 270
           V +   LID YA+ G +  A  VF+ M  K+VVSW+AM+A Y+++G    AF        
Sbjct: 300 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 359

Query: 271 ------------------------EALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
                                   EAL LFR+MI       PN VT++SVL ACA+L A 
Sbjct: 360 ENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGS--LPNCVTIISVLSACASLGAF 417

Query: 307 EQGKMIHGYILRR----------GLDSILPVVSALVTMYARCGKLELGQCVFDH--MDKR 354
            QG  IH Y L+           G D  L V +AL+ MY++C   +  + +FD   +++R
Sbjct: 418 SQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEER 477

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIY--HGVSPSPISFVSVLGACSHAGLVEEGKM 412
           +VV+W  +I  +  +G    A+++F EMI   +GV+P+  +   +L AC+H   +  GK 
Sbjct: 478 NVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ 537

Query: 413 LFESMRKEHMIRPSVEHYA-CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
           +   + + H    S    A C++D+  +   ++ A  + + +  +     W S++    +
Sbjct: 538 IHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGM 596

Query: 472 H 472
           H
Sbjct: 597 H 597



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 189/412 (45%), Gaps = 63/412 (15%)

Query: 113 QDPF-----LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            +PF     L T ++  Y    + D A  V ++        WN L R     GR +  + 
Sbjct: 82  SEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAIN 141

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           +  RM   GT  R D FT  +VLKAC          + G   H  +  +G+   V I   
Sbjct: 142 VSCRMLRAGT--RPDHFTLPHVLKACGE----LPSYRCGSAFHGLICCNGFESNVFICNA 195

Query: 228 LIDMYARFGCVMYAGFVF---SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
           L+ MY+R G +  A  +F   +Q  + +V+SW+++++ + ++  A+ AL+LF +M +  H
Sbjct: 196 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 255

Query: 285 DLCPNS----VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           +   N     +++V++L AC +L A+ Q K +HG  +R G    + V +AL+  YA+CG 
Sbjct: 256 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGL 315

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYG------------------------------VHG 370
           +E    VF+ M+ +DVVSWN++++ Y                               + G
Sbjct: 316 MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAG 375

Query: 371 YGGK-----AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           Y  +     A+ +F++MI+ G  P+ ++ +SVL AC+  G   +G  +     K  ++  
Sbjct: 376 YSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTL 435

Query: 426 SVEH---------YACMVDLLGRANKLEEAAKIIEDLRIEPGPKV-WGSLLG 467
             +          Y  ++D+  +    + A  I +D+ +E    V W  ++G
Sbjct: 436 DNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 487


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/588 (37%), Positives = 354/588 (60%), Gaps = 7/588 (1%)

Query: 78  PTQHTYELLLLSC--THHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P + + +L+L  C     + L     VH     +G D D  +   L+N+YS       AR
Sbjct: 282 PDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAR 341

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            VF+  +   +  WN++  +   +   EE + L+  ++    G++ D FT   +  A  A
Sbjct: 342 EVFNDMKHLDLISWNSMISSCAQSSLEEESVNLF--IDLLHEGLKPDHFTLASITLATAA 399

Query: 196 SSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
            +CG   LL  GK+IHA  ++ G++  +H+ + ++DMY + G ++ AG VF+ ++  + V
Sbjct: 400 KACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDV 459

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           +W++MI+    NG   +AL ++  M      + P+  T  ++++A + + ALEQG+ +H 
Sbjct: 460 AWTSMISGCVDNGNEDQALRIYHRM--RQSRVMPDEYTFATLIKASSCVTALEQGRQLHA 517

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            +++    S   V ++LV MYA+CG +E    +F  M+ R++  WN+++     HG   +
Sbjct: 518 NVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEE 577

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A+ +FK M  HG+ P  +SF+ +L ACSHAGL  E      SM  ++ I P +EHY+C+V
Sbjct: 578 AVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLV 637

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           D LGRA  ++EA K+IE +  +    +  +LLG+CRI  +VE  +R + RLF LEP ++ 
Sbjct: 638 DALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSA 697

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
            YVLL+++YAAA+ WD+V   +++++ + ++K PG S I+VK  ++ FV  D  HPQ + 
Sbjct: 698 AYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADI 757

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
           ++  +  +   ++E GYVP T+ VL D++ EEKER +  HSEKLA+A+GLI+T    TIR
Sbjct: 758 IYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIR 817

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + KNLR+C DCH+  K+ISK   +EI++RD NRFHHFR+GVCSCGDYW
Sbjct: 818 VIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 212/406 (52%), Gaps = 15/406 (3%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           T+ T   +L  C +   L  A  VH +    G + D F+   L+N+YS    + DAR +F
Sbjct: 182 TRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLF 241

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           D  R R + +WN + +     G  +E  +L+   +   +G+R D F+   +L  C+ +  
Sbjct: 242 DWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFH--RSGLRPDEFSVQLILNGCLWA-- 297

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
           G   L+ GK++H   ++ G +  V +  +L++MY++ GC  +A  VF+ M   +++SW++
Sbjct: 298 GTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNS 357

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPN-----SVTMVSVLQACAALAALEQGKMIH 313
           MI+  A++ +  E++ LF +++ E   L P+     S+T+ +  +AC  L  L+QGK IH
Sbjct: 358 MISSCAQSSLEEESVNLFIDLLHEG--LKPDHFTLASITLATAAKACGCLVLLDQGKQIH 415

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
            + ++ G DS L V S ++ MY +CG +     VF+++   D V+W S+IS    +G   
Sbjct: 416 AHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNED 475

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR-PSVEHYAC 432
           +A++I+  M    V P   +F +++ A S    +E+G+ L  ++ K   +  P V     
Sbjct: 476 QALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TS 533

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
           +VD+  +   +E+A ++ + + +     +W ++L     H N E A
Sbjct: 534 LVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEA 578



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 199/421 (47%), Gaps = 43/421 (10%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+ LLL  CTH           + +  +G   D FL   L+ +YS   S+  AR VFD T
Sbjct: 90  THNLLLGKCTH-----------ARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTT 138

Query: 142 RRRTIYVWNALFRALTLA-----GRGEEVLELYRRMNGT-GTGIRSDRFTYTYVLKACVA 195
             R +  WNA+  A   +     G  +E L L+R +  + G+   + R T   VLK C+ 
Sbjct: 139 PERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGS---TTRMTLAPVLKLCLN 195

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           S C    L   + +H   ++ G    V +   L+++Y++ G +  A  +F  M  ++VV 
Sbjct: 196 SGC----LWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVL 251

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC--AALAALEQGKMIH 313
           W+ M+  Y + G+  EA +LF E       L P+  ++  +L  C  A    LE GK +H
Sbjct: 252 WNMMLKGYVQLGLEKEAFQLFSE--FHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVH 309

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
           G  ++ GLDS + V ++LV MY++ G     + VF+ M   D++SWNS+ISS        
Sbjct: 310 GIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEE 369

Query: 374 KAIQIFKEMIYHGVSP-----SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           +++ +F ++++ G+ P     + I+  +   AC    L+++GK +       H I+   +
Sbjct: 370 ESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQI-----HAHAIKAGFD 424

Query: 429 H----YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484
                 + ++D+  +   +  A  I+ +    P    W S++  C  + N + A R   R
Sbjct: 425 SDLHVNSGILDMYIKCGDMVNAG-IVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHR 483

Query: 485 L 485
           +
Sbjct: 484 M 484


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/583 (37%), Positives = 360/583 (61%), Gaps = 9/583 (1%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           H Y+  +  C    +L +   VH+ +   G+    +L T+L+ +Y+   +++DA +V D 
Sbjct: 36  HDYDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDG 95

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
              R +  W A+    +   R  E  +L+  M     G   + FT   VL +C  S    
Sbjct: 96  MPERNVVSWTAMISGYSQNERPAEAWDLFIMM--LRAGCEPNEFTLASVLTSCTGSQ--- 150

Query: 201 SLLKHG-KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
            + +H  K++HA  ++  +   + + ++L+DMYAR   +  A  VF  +  ++VVS++ +
Sbjct: 151 GIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTI 210

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           ++ Y R G+  EAL LFR++  E   +  N VT   +L A + L++++ GK +HG ILRR
Sbjct: 211 LSGYTRLGLDEEALNLFRQLYNEG--MQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRR 268

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
            L   + + ++L+ MY++CGKL   + VFD+M +R VVSWN+++  YG HG   + +Q+F
Sbjct: 269 ELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLF 328

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           + M    V P  ++ ++VL   SH GLV+EG  +F+ + KE     + +HY C++DLLGR
Sbjct: 329 RFMC-DKVKPDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGR 387

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           + +LE+A  +I+ +  +P   +WGSLLG+CR+H NV + E  +++LF++EP NAGNYV+L
Sbjct: 388 SGQLEKALLLIQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVIL 447

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           +++YAAA MW +V R+++L+  + + K PGRS + + + +++F S + FHP+ E ++  +
Sbjct: 448 SNIYAAARMWKDVFRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINVKI 507

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
             + A +K  G+VP    VL+D+D E+KER++LGHSEKLA+ FGL++T    TI++ KNL
Sbjct: 508 NEIYAAIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNL 567

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCH+F KF+SK   +EI +RD NRFH    G C+CGDYW
Sbjct: 568 RICVDCHNFAKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 610


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/590 (39%), Positives = 372/590 (63%), Gaps = 13/590 (2%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P++ T   L+ + T  +SL     +H    + G D+D  L   L+++Y+   S ++ARH
Sbjct: 323 SPSKVT---LVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARH 379

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +F +     +  WN +    +  G+ +  +EL++RM   G  +   R TY  +L+A  ++
Sbjct: 380 LFKRIPCNAVS-WNTMIAGSSQKGQMKRAVELFQRMQLEG--MAPVRATYLNLLEAVASN 436

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN---V 253
                 +  G+++H+ ++  GY     I T ++ MYA  G +  A   F + A+++   V
Sbjct: 437 PEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDV 496

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+A+I+  +++G    AL  FR M +  H + PN +T V+VL ACA  AAL +G+++H
Sbjct: 497 VSWNAIISSLSQHGHGKRALGFFRRMDL--HGVAPNQITCVAVLDACAGAAALTEGEIVH 554

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYG 372
            ++   G++S L V +AL +MY RCG LE  + +F+ +  +RDVV +N++I++Y  +G  
Sbjct: 555 DHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLA 614

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
           G+A+++F  M   G  P   SFVSVL ACSH GL +EG  +F SMR+ + I PS +HYAC
Sbjct: 615 GEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYAC 674

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
            VD+LGRA  L +A ++I  + ++P   VW +LLG+CR + +V+    A+  + EL+P +
Sbjct: 675 AVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGD 734

Query: 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQF 552
              YV+L+++ A A  WDE   V+  +E+RGL+K  G+S IE+K +++ FV+ D  HP+ 
Sbjct: 735 ESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRS 794

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
           E+++  L  L AE++E GYVP T++VL  +D  EKER++  HSE+LA+A G++++S  +T
Sbjct: 795 EEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSST-DT 853

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +R+ KNLR+CEDCH+ TKFISK  NKEI+VRD +RFHHF +G CSCGDYW
Sbjct: 854 VRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 189/381 (49%), Gaps = 20/381 (5%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LL +      LS    +H+ +   G +++  L   L+ +Y   +S+ D   VF +   R 
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
              W  +  A T  G+ +  + ++ RM   G  +R D  T+  VLKAC         L  
Sbjct: 93  EASWTTIITAYTEHGQAKRAIGMFHRMQQEG--VRCDAVTFLAVLKACAR----LGDLSQ 146

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           G+ IHA ++  G  G   +   L+ +Y   GCV  A  +F +M  +++VSW+A IA  A+
Sbjct: 147 GRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIAANAQ 205

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           +G    ALELF+ M +E   + P  +T+V  L  CA +    Q + IH  +   GL+  L
Sbjct: 206 SGDLGIALELFQRMQLEG--VRPARITLVIALTVCATI---RQAQAIHFIVRESGLEQTL 260

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +AL + YAR G L   + VFD   +RDVVSWN+++ +Y  HG+  +A  +F  M++ 
Sbjct: 261 VVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHE 320

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+SPS ++ V+    CS    +  G+M+     ++ + R  V   A ++D+  R    EE
Sbjct: 321 GISPSKVTLVNASTGCSS---LRFGRMIHGCALEKGLDRDIVLGNA-LLDMYTRCGSPEE 376

Query: 446 AAKIIEDLRIEPGPKVWGSLL 466
           A  + +  RI      W +++
Sbjct: 377 ARHLFK--RIPCNAVSWNTMI 395



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 171/340 (50%), Gaps = 19/340 (5%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+  +L +C     LS   ++H+ + ++G      L   L+++Y     V  A  +F+K 
Sbjct: 130 TFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM 189

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             R +  WNA   A   +G     LEL++RM     G+R  R T    L  C       +
Sbjct: 190 -ERDLVSWNAAIAANAQSGDLGIALELFQRMQ--LEGVRPARITLVIALTVC-------A 239

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            ++  + IH  V   G    + + T L   YAR G +  A  VF + A ++VVSW+AM+ 
Sbjct: 240 TIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLG 299

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            YA++G   EA  LF  M+ E   + P+ VT+V+    C   ++L  G+MIHG  L +GL
Sbjct: 300 AYAQHGHMSEAALLFARMLHEG--ISPSKVTLVNASTGC---SSLRFGRMIHGCALEKGL 354

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           D  + + +AL+ MY RCG  E  + +F  +   + VSWN++I+     G   +A+++F+ 
Sbjct: 355 DRDIVLGNALLDMYTRCGSPEEARHLFKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQR 413

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           M   G++P   +++++L A   A   EE + + E  RK H
Sbjct: 414 MQLEGMAPVRATYLNLLEAV--ASNPEEARAMAEG-RKLH 450



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 106/222 (47%), Gaps = 22/222 (9%)

Query: 53  NELIQSLCKQGNLRQAL------DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I SL + G+ ++AL      D+  + PN  Q T   +L +C    +L++   VH HL
Sbjct: 500 NAIISSLSQHGHGKRALGFFRRMDLHGVAPN--QITCVAVLDACAGAAALTEGEIVHDHL 557

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR-RRTIYVWNALFRALTLAGRGEEV 165
             +G + + F+ T L ++Y    S++ AR +F+K    R + ++NA+  A +  G   E 
Sbjct: 558 RHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEA 617

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV--- 222
           L+L+ RM   G+  R D  ++  VL AC        L   G EI  S +R  Y GI    
Sbjct: 618 LKLFWRMQQEGS--RPDEQSFVSVLSACSHG----GLADEGWEIFRS-MRQSY-GIAPSE 669

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-AC 262
                 +D+  R G +  A  +   M VK  V+ W  ++ AC
Sbjct: 670 DHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGAC 711



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           +V +L+A      L QG+ IH  I+  GL+  L   + L+ +Y +C  L   + VF  ++
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIVSLGLEEELG--NHLLRLYLKCESLGDVEEVFSRLE 89

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
            RD  SW ++I++Y  HG   +AI +F  M   GV    ++F++VL AC+  G + +G+ 
Sbjct: 90  VRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149

Query: 413 L 413
           +
Sbjct: 150 I 150


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/665 (36%), Positives = 373/665 (56%), Gaps = 57/665 (8%)

Query: 53  NELIQSLCKQGNLRQALDVLS-----IEPNPTQHTYELL-----LLSCTHHNSLSDALNV 102
           N ++ +  K  N   ALD+ S     +   PT    +++     L +C    ++     V
Sbjct: 235 NSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEV 294

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
           H +   NG   D F+   LI+ Y+    +++A  VF+    + +  WNA+    + +G  
Sbjct: 295 HGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNF 354

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVL-----KAC------------------------ 193
           E   EL++ M      I  D  T+T V+     + C                        
Sbjct: 355 EAAFELFKNMRKEN--IPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 412

Query: 194 -VASSCG-FSLLKHGKEIHASVLRH----------GYNGIVHIMTTLIDMYARFGCVMYA 241
            V S+C        G EIHA  L++          G +  + +   LIDMY++      A
Sbjct: 413 SVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 472

Query: 242 GFVFSQMAV--KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
             +F  + +  +NVV+W+ MI  +A+ G + +AL+LF EMI E + + PN+ T+  +L A
Sbjct: 473 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 532

Query: 300 CAALAALEQGKMIHGYILR--RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           CA LAA+  GK IH Y+LR  R   S   V + L+ MY++CG ++  + VFD M ++  +
Sbjct: 533 CAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAI 592

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           SW S+++ YG+HG G +A+ IF +M   G  P  I+F+ VL ACSH G+V++G   F+SM
Sbjct: 593 SWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSM 652

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
             ++ + P  EHYAC +DLL R+ +L++A + ++D+ +EP   VW +LL +CR+H NVEL
Sbjct: 653 SADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVEL 712

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
           AE A  +L E+   N G+Y L++++YA A  W +V R++ L++  G++K PG S ++ ++
Sbjct: 713 AEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQK 772

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
              SF   D  HP   Q++ALL +L   +K  GYVP+T   L+D+D EEK  +++ HSEK
Sbjct: 773 GTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEK 832

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+A+GL+ TS G  IRITKNLR+C DCHS   +ISK  + EI+VRD +RFHHF+NG CS
Sbjct: 833 LALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCS 892

Query: 658 CGDYW 662
           CG YW
Sbjct: 893 CGGYW 897



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 224/481 (46%), Gaps = 68/481 (14%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI+   KQG L  A++V    L     P   T   +L +C    S       H  +  
Sbjct: 131 NLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICC 190

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI---YVWNALFRALTLAGRGEEV 165
           NGF+ + F+   L+ +YS   S+++A  +FD+  +R I     WN++  A   +      
Sbjct: 191 NGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTA 250

Query: 166 LELYRRM----NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
           L+L+ +M    +   T  RSD  +   +L AC +       +   KE+H + +R+G    
Sbjct: 251 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGS----LKAVPQTKEVHGNAIRNGTFPD 306

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG---MAF-------- 270
           V +   LID YA+ G +  A  VF+ M  K+VVSW+AM+A Y+++G    AF        
Sbjct: 307 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 366

Query: 271 ------------------------EALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
                                   EAL LFR+MI       PN VT++SVL ACA+L A 
Sbjct: 367 ENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGS--LPNCVTIISVLSACASLGAF 424

Query: 307 EQGKMIHGYILRR----------GLDSILPVVSALVTMYARCGKLELGQCVFDH--MDKR 354
            QG  IH Y L+           G D  L V +AL+ MY++C   +  + +FD   +++R
Sbjct: 425 SQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEER 484

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIY--HGVSPSPISFVSVLGACSHAGLVEEGKM 412
           +VV+W  +I  +  +G    A+++F EMI   +GV+P+  +   +L AC+H   +  GK 
Sbjct: 485 NVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ 544

Query: 413 LFESMRKEHMIRPSVEHYA-CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
           +   + + H    S    A C++D+  +   ++ A  + + +  +     W S++    +
Sbjct: 545 IHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGM 603

Query: 472 H 472
           H
Sbjct: 604 H 604



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 189/412 (45%), Gaps = 63/412 (15%)

Query: 113 QDPF-----LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            +PF     L T ++  Y    + D A  V ++        WN L R     GR +  + 
Sbjct: 89  SEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAIN 148

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           +  RM   GT  R D FT  +VLKAC          + G   H  +  +G+   V I   
Sbjct: 149 VSCRMLRAGT--RPDHFTLPHVLKACGE----LPSYRCGSAFHGLICCNGFESNVFICNA 202

Query: 228 LIDMYARFGCVMYAGFVF---SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
           L+ MY+R G +  A  +F   +Q  + +V+SW+++++ + ++  A+ AL+LF +M +  H
Sbjct: 203 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 262

Query: 285 DLCPNS----VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           +   N     +++V++L AC +L A+ Q K +HG  +R G    + V +AL+  YA+CG 
Sbjct: 263 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGL 322

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYG------------------------------VHG 370
           +E    VF+ M+ +DVVSWN++++ Y                               + G
Sbjct: 323 MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAG 382

Query: 371 YGGK-----AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           Y  +     A+ +F++MI+ G  P+ ++ +SVL AC+  G   +G  +     K  ++  
Sbjct: 383 YSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTL 442

Query: 426 SVEH---------YACMVDLLGRANKLEEAAKIIEDLRIEPGPKV-WGSLLG 467
             +          Y  ++D+  +    + A  I +D+ +E    V W  ++G
Sbjct: 443 DNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 494


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/614 (37%), Positives = 357/614 (58%), Gaps = 41/614 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL +C    +  +   +H H+   G D D ++ T LI +Y      +DAR V
Sbjct: 101 PNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKV 160

Query: 138 FDKTRRRTI--------------YV-----------------WNALFRALTLAGRGEEVL 166
           FD++  R +              Y+                 WNAL       G  +E L
Sbjct: 161 FDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEAL 220

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++ M    T ++ D  T   VL AC  S+     ++ G+++H+ +  HG+   + I+ 
Sbjct: 221 ELFKEM--MKTNVKPDESTMVTVLSACAQSAS----IELGRQVHSWIDDHGFGSNLKIVN 274

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LID+Y + G V  A  +F  ++ K+V+SW+ +I  Y    +  EAL LF+EM+      
Sbjct: 275 ALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES- 333

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELG 344
            PN VTM+S+L ACA L A++ G+ IH YI +R  G+ +   + ++L+ MYA+CG +E  
Sbjct: 334 -PNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAA 392

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           Q VFD M  R + SWN++I  + +HG    A  IF  M   G+ P  I+FV +L ACSH+
Sbjct: 393 QQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHS 452

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+++ G+ +F SM +++ I P +EHY CM+DLLG +   +EA ++I  + ++P   +W S
Sbjct: 453 GMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCS 512

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +C++H NVEL E  ++ L ++EP N+G+YVLL+++YA A  W+EV + + LL  +G+
Sbjct: 513 LLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGM 572

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +KVPG S IE+   ++ F+  D+ HP+  +++ +L  +   ++E G+VP T  VL +++ 
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 632

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           E KE  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH  TK ISK   +EI+ RD
Sbjct: 633 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 692

Query: 645 VNRFHHFRNGVCSC 658
             RFHHF +GVCSC
Sbjct: 693 RTRFHHFXDGVCSC 706



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 203/388 (52%), Gaps = 45/388 (11%)

Query: 102 VHSHLTDNGFDQDPFLVTKLIN---VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           +H+ +   G     + ++KLI    +  HFD +  A  VFD  +   + +WN +FR   L
Sbjct: 21  IHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGHAL 80

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +      L LY  M     G+  + +T+ ++LKAC  S       + G++IH  VL+ G 
Sbjct: 81  SSDPVSALYLYVCM--ISLGLVPNSYTFPFLLKACAKSKA----FREGQQIHGHVLKLGC 134

Query: 219 NGIVHIMTTLIDMYARFG----------------CVMYAGFV---------------FSQ 247
           +  +++ T+LI MY + G                 V Y   +               F +
Sbjct: 135 DLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDE 194

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           + VK+VVSW+A+I+ YA  G   EALELF+EM+    ++ P+  TMV+VL ACA  A++E
Sbjct: 195 IPVKDVVSWNALISGYAETGNYKEALELFKEMM--KTNVKPDESTMVTVLSACAQSASIE 252

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+ +H +I   G  S L +V+AL+ +Y +CG++E    +F+ +  +DV+SWN+LI  Y 
Sbjct: 253 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYT 312

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML--FESMRKEHMIRP 425
                 +A+ +F+EM+  G SP+ ++ +S+L AC+H G ++ G+ +  +   R + +  P
Sbjct: 313 HMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNP 372

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDL 453
           S    + ++D+  +   +E A ++ + +
Sbjct: 373 SSLRTS-LIDMYAKCGDIEAAQQVFDSM 399



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 174/403 (43%), Gaps = 51/403 (12%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI    + GN ++AL++    +     P + T   +L +C    S+     VHS + D
Sbjct: 204 NALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDD 263

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GF  +  +V  LI++Y     V+ A  +F+    + +  WN L    T     +E L L
Sbjct: 264 HGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLL 323

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH--GYNGIVHIMT 226
           ++ M  +G     +  T   +L AC         +  G+ IH  + +   G +    + T
Sbjct: 324 FQEMLRSGES--PNEVTMLSILPACAH----LGAIDIGRWIHVYIDKRLKGVSNPSSLRT 377

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +LIDMYA+ G +  A  VF  M  +++ SW+AMI  +A +G A  A ++F    M    +
Sbjct: 378 SLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSR--MRKDGI 435

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+ +T V +L AC+    L+ G+    +I R           ++   Y    KLE   C
Sbjct: 436 EPDDITFVGLLSACSHSGMLDLGR----HIFR-----------SMTEDYKITPKLEHYGC 480

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           + D +               G  G   +A ++   M    + P  + + S+L AC   G 
Sbjct: 481 MIDLL---------------GHSGLFKEAEEMINSM---EMDPDGVIWCSLLKACKMHGN 522

Query: 407 VEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAK 448
           VE G+   +++ K   I P +   Y  + ++   A +  E AK
Sbjct: 523 VELGESFAQNLIK---IEPKNSGSYVLLSNIYATAGRWNEVAK 562


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/608 (38%), Positives = 356/608 (58%), Gaps = 51/608 (8%)

Query: 91  THHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN 150
           THH      L +H+ L   G    P L  KL   Y+    +  +  +F +T    +++W 
Sbjct: 36  THH-----LLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWT 90

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
            +  A          L  Y +M      I+ + FT + +LKAC         L   + +H
Sbjct: 91  HIINAHAHFDLFHHALSYYSQM--LTHPIQPNAFTLSSLLKACT--------LHPARAVH 140

Query: 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAF 270
           +  ++ G +  +++ T L+D YAR G V  A  +F  M  +++VS++AM+ CYA++GM  
Sbjct: 141 SHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLP 200

Query: 271 EALELFREMIMES------------------------------------HDLCPNSVTMV 294
           EA  LF  M M+                                       + PN +T+V
Sbjct: 201 EARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVV 260

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           +VL +C  + ALE GK +H Y+   G+   + V +ALV MY +CG LE  + VFD M+ +
Sbjct: 261 AVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGK 320

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           DVV+WNS+I  YG+HG+  +A+Q+F EM   GV PS I+FV+VL AC+HAGLV +G  +F
Sbjct: 321 DVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVF 380

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
           +SM+  + + P VEHY CMV+LLGRA +++EA  ++  + +EP P +WG+LL +CRIH N
Sbjct: 381 DSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSN 440

Query: 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
           V L E  ++ L      ++G YVLL+++YAAA  W  V +V+ +++  G++K PG S IE
Sbjct: 441 VSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIE 500

Query: 535 VKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGH 594
           VK +++ FV+ D  HP+ + ++++L  ++  +KE+ Y P+T  VL+D+  +EKE+ +  H
Sbjct: 501 VKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVH 560

Query: 595 SEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
           SEKLA+AFGLI+TS G  I+I KNLR+C DCH+  K +SK + ++I++RD NRFHHF NG
Sbjct: 561 SEKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENG 620

Query: 655 VCSCGDYW 662
            CSC DYW
Sbjct: 621 SCSCRDYW 628



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 110/259 (42%), Gaps = 42/259 (16%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T   +L SC    +L     VHS++ +NG   +  + T L+++Y    S++DAR V
Sbjct: 254 PNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKV 313

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    + +  WN++     + G  +E L+L+  M     G++    T+  VL AC  + 
Sbjct: 314 FDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEM--CCIGVKPSDITFVAVLTACAHA- 370

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
               L+  G E+  S ++ GY      M   ++ Y   GC                    
Sbjct: 371 ---GLVSKGWEVFDS-MKDGYG-----MEPKVEHY---GC-------------------- 398

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            M+    R G   EA +L R M +E     P+ V   ++L AC   + +  G+ I   ++
Sbjct: 399 -MVNLLGRAGRMQEAYDLVRSMEVE-----PDPVLWGTLLWACRIHSNVSLGEEIAEILV 452

Query: 318 RRGLDSILPVVSALVTMYA 336
             GL S    V  L  MYA
Sbjct: 453 SNGLASSGTYV-LLSNMYA 470


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/581 (39%), Positives = 367/581 (63%), Gaps = 10/581 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           L+ + T  +SL     +H+   + G D+D  L   L+++Y+   S ++ARH+F+      
Sbjct: 329 LVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPGNA 388

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  WN +    +  G+ +  LEL++RM   G  +   R TY  +L+A  ++      +  
Sbjct: 389 VS-WNTMIAGSSQKGQMKRALELFQRMQLEG--MAPVRATYLNLLEAVASNPEEARAMAE 445

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN---VVSWSAMIAC 262
           G+++H+ ++  GY     I T ++ MYA  G +  A   F + A+++   VVSW+A+I+ 
Sbjct: 446 GRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISS 505

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
            +++G    AL  FR M +  H + PN +T V+VL ACA  AAL +G ++H ++   G++
Sbjct: 506 LSQHGHGKRALGFFRRMDL--HGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGME 563

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           S + V +AL +MY RCG LE  + +F+ +  +RDVV +N++I++Y  +G  G+A+++F  
Sbjct: 564 SNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWR 623

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   G  P   SFVSVL ACSH GL +EG  +F SMR+ + I PS +HYAC VD+LGRA 
Sbjct: 624 MQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAG 683

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
            L +A ++I  + ++P   VW +LLG+CR + +V+    A+  + EL+P +   YV+L++
Sbjct: 684 WLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSN 743

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           + A A  WDE   V+  +E+RGL+K  G+S IE+K +++ FV+ D  HP+ E+++  L  
Sbjct: 744 ILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELER 803

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           L AE++E GYVP T++VL  +D  EKER++  HSE+LA+A G++++S  +T+R+ KNLR+
Sbjct: 804 LHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSST-DTVRVMKNLRV 862

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CEDCH+ TKFISK  NKEI+VRD +RFHHF +G CSCGDYW
Sbjct: 863 CEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 191/382 (50%), Gaps = 22/382 (5%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LL +      LS    +H+ +   G +++  L   L+ +Y   +S+ D   VF +   R 
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
              W  +  A T  G+ +  + ++ RM   G  +R D  T+  VLKAC         L  
Sbjct: 93  EASWTTIITAYTEHGQAKRAIWMFHRMQQEG--VRCDAVTFLAVLKACAR----LGDLSQ 146

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           G+ IHA ++  G  G   +   L+ +Y   GCV  A  +F +M  +++VSW+A IA  A+
Sbjct: 147 GRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERME-RDLVSWNAAIAANAQ 205

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           +G    ALELF+ M +E   + P  +T+V  L  CA +    Q + IH  +   GL+  L
Sbjct: 206 SGDLDMALELFQRMQLEG--VRPARITLVITLSVCAKI---RQARAIHSIVRESGLEQTL 260

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +AL + YAR G L+  + VFD   +RDVVSWN+++ +Y  HG+  +A  +F  M++ 
Sbjct: 261 VVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHE 320

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ PS ++ V+    CS    +  G+M+     ++ + R  V   A ++D+  R    EE
Sbjct: 321 GIPPSKVTLVNASTGCSS---LRFGRMIHACALEKGLDRDIVLGNA-LLDMYTRCGSPEE 376

Query: 446 AAKIIEDLRIEPGPKV-WGSLL 466
           A  + E +   PG  V W +++
Sbjct: 377 ARHLFEGI---PGNAVSWNTMI 395



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 173/340 (50%), Gaps = 19/340 (5%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+  +L +C     LS   ++H+ + ++G +    L   L+++Y     V  A  +F++ 
Sbjct: 130 TFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM 189

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             R +  WNA   A   +G  +  LEL++RM     G+R  R T    L  C        
Sbjct: 190 -ERDLVSWNAAIAANAQSGDLDMALELFQRMQ--LEGVRPARITLVITLSVCAK------ 240

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            ++  + IH+ V   G    + + T L   YAR G +  A  VF + A ++VVSW+AM+ 
Sbjct: 241 -IRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLG 299

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            YA++G   EA  LF  M+ E   + P+ VT+V+    C   ++L  G+MIH   L +GL
Sbjct: 300 AYAQHGHMSEAALLFARMLHEG--IPPSKVTLVNASTGC---SSLRFGRMIHACALEKGL 354

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           D  + + +AL+ MY RCG  E  + +F+ +   + VSWN++I+     G   +A+++F+ 
Sbjct: 355 DRDIVLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQR 413

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           M   G++P   +++++L A   A   EE + + E  RK H
Sbjct: 414 MQLEGMAPVRATYLNLLEAV--ASNPEEARAMAEG-RKLH 450



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 107/222 (48%), Gaps = 22/222 (9%)

Query: 53  NELIQSLCKQGNLRQAL------DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I SL + G+ ++AL      D+  + PN  Q T   +L +C    +L++ + VH HL
Sbjct: 500 NAIISSLSQHGHGKRALGFFRRMDLHGVAPN--QITCVAVLDACAGAAALTEGVIVHDHL 557

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR-RRTIYVWNALFRALTLAGRGEEV 165
             +G + + F+ T L ++Y    S++ AR +F+K    R + ++NA+  A +  G   E 
Sbjct: 558 RHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEA 617

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV--- 222
           L+L+ RM   G+  R D  ++  VL AC        L   G EI  S +R  Y GI    
Sbjct: 618 LKLFWRMQQEGS--RPDEQSFVSVLSACSHG----GLADEGWEIFRS-MRQSY-GIAPSE 669

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-AC 262
                 +D+  R G +  A  +   M VK  V+ W  ++ AC
Sbjct: 670 DHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGAC 711



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           +V +L+A      L QG+ IH  I+  GL+  L   + L+ +Y +C  L   + VF  ++
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIVSLGLEEELG--NHLLRLYLKCESLGDVEEVFSRLE 89

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
            RD  SW ++I++Y  HG   +AI +F  M   GV    ++F++VL AC+  G + +G+ 
Sbjct: 90  VRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149

Query: 413 L 413
           +
Sbjct: 150 I 150


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/547 (40%), Positives = 342/547 (62%), Gaps = 13/547 (2%)

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           FL+  LIN+Y  F  + DA+ VFDK   R +  W  +  A + A   ++ LE    M   
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLM--L 58

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
             G+R + FTY+ VL+AC         L + +++H  +++ G +  V + + LID+Y+R+
Sbjct: 59  REGVRPNMFTYSSVLRACDG-------LFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRW 111

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G +  A  VF +M   ++V WS++IA +A+N    EAL LF+ M  +         T+ S
Sbjct: 112 GELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRM--KRAGFLAQQTTLTS 169

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           VL+AC  LA LE G+ +H ++L+   D IL   +AL+ MY +CG LE    VF  M ++D
Sbjct: 170 VLRACTGLALLELGRQVHVHVLKYDQDLILN--NALLDMYCKCGSLEDANAVFVRMVEKD 227

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           V+SW+++I+    +GY  +A+++F+ M   G+ P+ ++ V VL ACSHAGLVEEG   F 
Sbjct: 228 VISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFH 287

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
           SM++   I P  EHY CM+DLLGRA +L EA  +I ++  EP    W +LL +CR+H NV
Sbjct: 288 SMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNV 347

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           ++A  A+K++  L+P +AG YVLL+++YA    W++V  V+R +  RG++K PG S IEV
Sbjct: 348 DVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEV 407

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
            +++++F+  D  HPQ  +++  L  L  ++   GYVP T  VL DL+ E+ +  +  HS
Sbjct: 408 SKQIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHS 467

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EKLA+ FGL++  +G+TIRI KNLR+C DCH FTK ++K   + I++RD  R+HHF++G+
Sbjct: 468 EKLAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGL 527

Query: 656 CSCGDYW 662
           CSCGD+W
Sbjct: 528 CSCGDFW 534



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 162/308 (52%), Gaps = 15/308 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   TY  +L +C   + L +   +H  +   G D D F+ + LI+VYS +  +++A  V
Sbjct: 64  PNMFTYSSVLRAC---DGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+     + VW+++         G+E L L++RM     G  + + T T VL+AC    
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMK--RAGFLAQQTTLTSVLRACT--- 175

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G +LL+ G+++H  VL++  + I++    L+DMY + G +  A  VF +M  K+V+SWS
Sbjct: 176 -GLALLELGRQVHVHVLKYDQDLILN--NALLDMYCKCGSLEDANAVFVRMVEKDVISWS 232

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYI 316
            MIA  A+NG + EAL+LF    M+   + PN VT+V VL AC+    +E+G    H   
Sbjct: 233 TMIAGLAQNGYSKEALKLFES--MKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMK 290

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKA 375
              G+D        ++ +  R G+L     + + M+ + D V+W +L+++  VH     A
Sbjct: 291 ELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVA 350

Query: 376 IQIFKEMI 383
           I   K+++
Sbjct: 351 IHAAKQIL 358


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/637 (36%), Positives = 374/637 (58%), Gaps = 18/637 (2%)

Query: 30  SSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVL-SIEPNPTQH---TYEL 85
           SS CC  S+NSS             L+   C + +L  A+ VL S+E         TY  
Sbjct: 232 SSRCCSYSVNSSLVSPHYVPPETESLLNH-CYRRDLPSAMHVLDSMERRGVWADSITYSE 290

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           L+  C  H ++ +   VH H+  NG+    FL   LIN+Y  F+ +++A+ +FDK   R 
Sbjct: 291 LIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERN 350

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  W  +  A + A   +  + L   M     G+  + FT++ VL+AC         L  
Sbjct: 351 VVSWTTMISAYSNAQLNDRAMRLLAFM--FRDGVMPNMFTFSSVLRAC-------ERLYD 401

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
            K++H+ +++ G    V + + LID+Y++ G ++ A  VF +M   + V W+++IA +A+
Sbjct: 402 LKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQ 461

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           +    EAL L++ M         +  T+ SVL+AC +L+ LE G+  H ++L+   D IL
Sbjct: 462 HSDGDEALHLYKSM--RRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQDLIL 519

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
              +AL+ MY +CG LE  + +F+ M K+DV+SW+++I+    +G+  +A+ +F+ M   
Sbjct: 520 N--NALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQ 577

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G  P+ I+ + VL ACSHAGLV EG   F SM   + I P  EHY CM+DLLGRA KL++
Sbjct: 578 GPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDD 637

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
             K+I ++  EP    W +LL +CR   NV+LA  A+K + +L+P + G YVLL+++YA 
Sbjct: 638 MVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAI 697

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
           +  W++V  V+R ++ RG++K PG S IEV +++++F+  D+ HPQ ++++  L      
Sbjct: 698 SKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICR 757

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           +   GYVP T  VL DL+ E++E  +  HSEKLA+ FG+++  K +TIRI KNL++C DC
Sbjct: 758 LAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDC 817

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H F K I++   + I++RD  R+HHF++GVCSCGDYW
Sbjct: 818 HKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/655 (38%), Positives = 368/655 (56%), Gaps = 42/655 (6%)

Query: 44  PTSLS-SRNKNELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSD 98
           P+ LS S   N +I S  K+   R AL+V +    ++          +L +C   +    
Sbjct: 83  PSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQL 142

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
              +H  +   G D+D F+   L+ +Y     V+ AR VFDK   R +  W+ + R+L+ 
Sbjct: 143 GKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSR 202

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
               +  LEL R MN                L A  A+      ++ GK +HA V+R+  
Sbjct: 203 NKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTAN------MRMGKAMHAYVIRNSN 256

Query: 219 NGIVHIMTT--LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
           N  + + TT  L+DMYA+ G +  A  +F+ +  K VVSW+AMIA   R+    EA  LF
Sbjct: 257 NEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALF 316

Query: 277 -----REMI------------------------MESHDLCPNSVTMVSVLQACAALAALE 307
                R+++                        M +  + P  VT+VS+L  CA   AL+
Sbjct: 317 DSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALD 376

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            GK +H YI +  ++    + +ALV MYA+CG +     +F     RD+  WN++I+ + 
Sbjct: 377 LGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFA 436

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           +HGYG +A+ IF EM   GV P+ I+F+ +L ACSHAGLV EGK LFE M     + P +
Sbjct: 437 MHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQI 496

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           EHY CMVDLLGRA  L+EA ++I+ + I+P   VWG+L+ +CR+H N +L E A+ +L E
Sbjct: 497 EHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLE 556

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           +EP N G  VL++++YAAA+ W +   V++ ++  G++K PG S IEV   ++ F+  D+
Sbjct: 557 IEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQ 616

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
            HPQ  +++ +L  +  ++ E GYVP T  VL ++D EEKE  +  HSEKLA+AFGLI+T
Sbjct: 617 SHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLIST 676

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +    IRI KNLR+C DCH+ TK +SK   + I+VRD NRFHHFR G CSCGDYW
Sbjct: 677 APSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/599 (38%), Positives = 360/599 (60%), Gaps = 9/599 (1%)

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
            LR+   +L+ E  PT   Y  ++ +C    +L+ A  +HSHL+ +    D FL+  LI+
Sbjct: 46  GLRELDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIH 105

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +Y    +V DARHVFD    R +  W  L           E L L   M       R   
Sbjct: 106 MYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDM--LRARFRPSG 163

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           FT+T  LKA  A +CG   +  G+++HA  +++  +  V++ + L+DMYAR   +  A  
Sbjct: 164 FTFTSFLKA--AGACGGRGI--GEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIR 219

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF  +  KN VSW+A+IA +AR G     L  F EM  + +       T  SV  A A +
Sbjct: 220 VFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEM--QRNGFGATHFTYSSVFSALARI 277

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
            ALEQG+ +H ++++ G      V + ++ MYA+ G +   + VFD +D+RD+V+WN+++
Sbjct: 278 GALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTML 337

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           +++  +G G +A+  F+E+  +G+  + I+F+SVL ACSH GLV+EGK  F+ M K++ +
Sbjct: 338 TAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFD-MMKDYNV 396

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
            P ++HY   VDLLGRA  L+EA   +  + +EP   VWG+LLG+CR+H N ++ + A+ 
Sbjct: 397 EPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAAD 456

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
            +FEL+P + G  VLL ++YA+   WD+  RV+++++A G++K P  S +E++  ++ FV
Sbjct: 457 HVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFV 516

Query: 544 SVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFG 603
           + D  HP+ E+++ +   ++  +K+ GYVP T  VL  +  +E+E  +  HSEK+A+AF 
Sbjct: 517 ADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFA 576

Query: 604 LINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           LIN   G TIRI KN+R+C DCHS  +++S+   +EI+VRD NRFHHF NG CSCGDYW
Sbjct: 577 LINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/690 (35%), Positives = 376/690 (54%), Gaps = 76/690 (11%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDAL 100
           S  P +L      +LI++    G+L++AL +    P P   T+ +L+   T H     A+
Sbjct: 3   SKLPANLQPCQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAI 62

Query: 101 NVHSHLTDN-----------------------------------GFDQDPFLVTKLINVY 125
           +++S L                                      GF++D  L   LI+++
Sbjct: 63  DIYSTLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMF 122

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
                V+ AR VFD    + +  W ++       G   + + L+R M   G  IR++  T
Sbjct: 123 GKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNG--IRANSLT 180

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
            + +L AC         +K G+E+H  +LR+   G V++ + L++MYA    +  A  VF
Sbjct: 181 VSSILPACA------DYIKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVF 234

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES--------------------HD 285
             M  +++VSW+ M+  Y  N      L LF +M  E                     H+
Sbjct: 235 DSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHE 294

Query: 286 LC-------------PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
           L              PN +T+VS L  C  L +L  GK IHGY+ R      + + +ALV
Sbjct: 295 LALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALV 354

Query: 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI 392
            +YA+CG LEL + VF+ M ++DVV+WN++I +  +HG GG+++ +F +M+  GV P+ +
Sbjct: 355 LLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSV 414

Query: 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           +F+ VL  CSH+ L +EG ++F SM  EH I P  +HY+CMVD+L RA +LEEA   I  
Sbjct: 415 TFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRK 474

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
           + IEP    WG+LLG+CR++ NVEL   A+ +LFE+EP NAGNYVLL+++   A  W E 
Sbjct: 475 MPIEPTAAAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEA 534

Query: 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV 572
             +++++  +GL K PGRS ++VK K+YSFV+ D+ + Q + ++  L  +  +M+  GY 
Sbjct: 535 SEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQ 594

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
           P T  VL ++D E++E  +  HSE+LAVAFG++N+S   T+R+ KNLR+C DCH+  K I
Sbjct: 595 PNTDFVLQNVDQEQREETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLI 654

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +K    +I+VRD  RFHHFR+G C+C D+W
Sbjct: 655 AKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/650 (36%), Positives = 366/650 (56%), Gaps = 72/650 (11%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P+Q T   +L SC  + +L     +HS +   G      + T L+N+Y+       A+ V
Sbjct: 140 PSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVV 199

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGE-------------------------------EVL 166
           FD+   + I  WNAL      +G+ E                               E L
Sbjct: 200 FDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEAL 259

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR----------- 215
            ++ +M    + ++ D FT   +L AC         L  GK+IHA +LR           
Sbjct: 260 AIFSKMLNEPS-LKPDNFTLASILSAC----ANLEKLNIGKQIHAYILRAETETSGAVGN 314

Query: 216 -----HGYNGIVHI-----------------MTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                +  +G V I                  T+L+D Y + G V  A  +F+++  ++V
Sbjct: 315 ALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDV 374

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+AMI  Y +NG+  +ALELFR M+ E  +  PNS T+ ++L   ++L  LE GK IH
Sbjct: 375 VAWTAMIVGYVQNGLWNDALELFRLMVNEGPE--PNSYTLAAMLSVSSSLTILEHGKQIH 432

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYG 372
              ++ G  S   V +AL+ MYA+ G + + + VFD  + K+++VSW S+I +   HG G
Sbjct: 433 ASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLG 492

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +AI +F+ M+  G+ P  I++V VL AC+H GLVE+G+  +  M + H I P++ HYAC
Sbjct: 493 KEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYAC 552

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
           M+DL GRA  L+EA   IE + IEP    WGSLL SC+IH N +LA+ A++RL  ++P N
Sbjct: 553 MIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGN 612

Query: 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQF 552
           +G Y+ LA+VY+A   W+   + ++L++ RG++K  G S I +K ++++F   D  HPQ 
Sbjct: 613 SGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQK 672

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
           ++++ L+  +  E+K+ G++P T+ VL+DL+ E KE+I+  HSEKLA+AFGL+NT +   
Sbjct: 673 DEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTA 732

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +RI KNLR+C DCHS  KFISK   +EI+VRD  RFHHF++G CSC DYW
Sbjct: 733 LRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 189/445 (42%), Gaps = 101/445 (22%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           +VH  +   G     +L+  L+  Y+   S+  A HVFD+   ++ + WN L       G
Sbjct: 31  SVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQG 90

Query: 161 RGEEVLELYRRM---------------NGTG--------------TGIRSDRFTYTYVLK 191
             E    L   M               N  G                +   +FT + VL 
Sbjct: 91  NFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLS 150

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           +C A+      L  G++IH+ V++ G    V + T+L++MYA+ G  + A  VF +M VK
Sbjct: 151 SCAANQT----LDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVK 206

Query: 252 NVVSWSA-------------------------------MIACYARNGMAFEALELFREMI 280
           N+ +W+A                               MI+ Y++ G   EAL +F +M+
Sbjct: 207 NISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKML 266

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
            E   L P++ T+ S+L ACA L  L  GK IH YILR   ++   V +AL++MYA+ G 
Sbjct: 267 NEP-SLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGG 325

Query: 341 LELGQCVFDH---------------------------------MDKRDVVSWNSLISSYG 367
           +E+ + + +H                                 +  RDVV+W ++I  Y 
Sbjct: 326 VEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYV 385

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES-MRKEHMIRPS 426
            +G    A+++F+ M+  G  P+  +  ++L   S   ++E GK +  S ++      PS
Sbjct: 386 QNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPS 445

Query: 427 VEHYACMVDLLGRANKLEEAAKIIE 451
           V +   ++ +  +   +  A ++ +
Sbjct: 446 VTN--ALIAMYAKTGNINVAKRVFD 468



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 155/341 (45%), Gaps = 69/341 (20%)

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
           G    S  F + ++L+  V     F+    G+ +H  +++ G +  V++M  L+  YA+ 
Sbjct: 4   GNSPTSSEF-FAHILQTSVRIKDPFA----GRSVHCQIIKKGLHLGVYLMNNLMTFYAKT 58

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNG------------------------MAFE 271
           G + +A  VF +M +K+  SW+ +I+ YA+ G                        + + 
Sbjct: 59  GSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYN 118

Query: 272 ALELFREMI-----MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
              LF   I     M S  + P+  T+ +VL +CAA   L+ G+ IH ++++ GL S +P
Sbjct: 119 QFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVP 178

Query: 327 VVSALVTMYARC-------------------------------GKLELGQCVFDHMDKRD 355
           V ++L+ MYA+C                               G+ EL    F+ M  RD
Sbjct: 179 VATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRD 238

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           +VSWNS+IS Y   GY  +A+ IF +M+    + P   +  S+L AC++   +  GK + 
Sbjct: 239 IVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIH 298

Query: 415 ES-MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
              +R E     +V +   ++ +  ++  +E A  I+E  R
Sbjct: 299 AYILRAETETSGAVGN--ALISMYAKSGGVEIARLIVEHNR 337



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 9/189 (4%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P P  +T   +L   +    L     +H+     G    P +   LI +Y+   +++ A+
Sbjct: 405 PEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAK 464

Query: 136 HVFD-KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
            VFD    ++ I  W ++  AL   G G+E + L+ RM     G++ D  TY  VL AC 
Sbjct: 465 RVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERM--LSVGMKPDHITYVGVLSACT 522

Query: 195 ASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-N 252
                  L++ G++ +  +   H     +     +ID+Y R G +  A      M ++ +
Sbjct: 523 H----VGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPD 578

Query: 253 VVSWSAMIA 261
            ++W +++A
Sbjct: 579 NIAWGSLLA 587



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           ME  +   +S     +LQ    +     G+ +H  I+++GL   + +++ L+T YA+ G 
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L     VFD M  +   SWN+LIS Y   G      ++ + ++Y      P+S+ +++  
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQG----NFEVSRRLLYEMPDCDPVSWTAIIVG 116

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPS 426
            +  GL +    +F  M  E  + PS
Sbjct: 117 YNQFGLFDNAIWMFAKMISER-VPPS 141


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/617 (37%), Positives = 355/617 (57%), Gaps = 39/617 (6%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           N  + T+  +L+ C+    +     ++  +   GF  D F+ + L+++Y+    + DA+ 
Sbjct: 135 NLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKR 194

Query: 137 VFDKTRRRTIYV-------------------------------WNALFRALTLAGRGEEV 165
            FD+   R + +                               W  +   L   G   E 
Sbjct: 195 YFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREA 254

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L+++R M   G  +  D+FT+  VL AC +       L  GK+IHA V+R  +   V + 
Sbjct: 255 LDMFREMRLAGFAM--DQFTFGSVLTACGS----LLALGEGKQIHAYVIRTDHKDNVFVG 308

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           + L+DMY++   +  A  VF +M  KNV+SW+AM+  Y +NG + EA+++F EM  + + 
Sbjct: 309 SALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEM--QRNG 366

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + P+  T+ SV+ +CA LA+LE+G   H   L  GL S + V +AL+T+Y +CG  E   
Sbjct: 367 VEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSH 426

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +F  M+ RD VSW +L++ Y   G   + I +F+ M+ HG+ P  ++F+ VL ACS AG
Sbjct: 427 RLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAG 486

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           LVE+G   FESM KEH I P V+H  C++DLLGRA +LEEA   I ++   P    W +L
Sbjct: 487 LVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATL 546

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           L SCR+H ++E+ + A+  L  LEP N  +YVLL+ +YA+   WD+V +++R +  + ++
Sbjct: 547 LSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVR 606

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K PG S I+ K K++ F + D+  P   Q++A L  L+ +M E+GYVP    VL+D++  
Sbjct: 607 KEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEES 666

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           EK +++  HSEKLA+AFGLI    G  IR+ KNLR+C DCH+ TKFISK   +EILVRD 
Sbjct: 667 EKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDA 726

Query: 646 NRFHHFRNGVCSCGDYW 662
            RFH F++G CSCGD+W
Sbjct: 727 VRFHLFKDGTCSCGDFW 743



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 178/393 (45%), Gaps = 67/393 (17%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           + + Y  LL  C    + + A  +H  +       + FL   LI  Y    ++  A HVF
Sbjct: 4   SSNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVF 63

Query: 139 DKTRRRTIYVWN---ALFRALTLAGRGEEVLELYRRMNGTG------------------- 176
           D   +  ++ WN   +++  L L  + +++  L    +G                     
Sbjct: 64  DHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVR 123

Query: 177 --------TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
                     +  +R T++ +L  C    C    +  G++I+  +L+ G+   V + + L
Sbjct: 124 VYKLMLKDAAMNLNRITFSTMLILCSKFRC----VDLGRQINGQILKFGFGSDVFVGSPL 179

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVV-------------------------------SWS 257
           +DMY + G +  A   F +M  +NVV                               SW+
Sbjct: 180 VDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWT 239

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            MI    +NG+  EAL++FREM +    +  +  T  SVL AC +L AL +GK IH Y++
Sbjct: 240 IMITGLMQNGLEREALDMFREMRLAGFAM--DQFTFGSVLTACGSLLALGEGKQIHAYVI 297

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R      + V SALV MY++C  ++  + VF  M +++V+SW +++  YG +G+  +A++
Sbjct: 298 RTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVK 357

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           IF EM  +GV P   +  SV+ +C++   +EEG
Sbjct: 358 IFFEMQRNGVEPDDFTLGSVISSCANLASLEEG 390



 Score = 45.8 bits (107), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GV 387
           + ++++Y++ G L   Q +F+ M  RD VSWN  IS Y  +G    A++++K M+    +
Sbjct: 75  NTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAM 134

Query: 388 SPSPISFVSVLGACSHAGLVEEGKML 413
           + + I+F ++L  CS    V+ G+ +
Sbjct: 135 NLNRITFSTMLILCSKFRCVDLGRQI 160


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/649 (36%), Positives = 365/649 (56%), Gaps = 70/649 (10%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P+Q T   +L SC  + +L     +HS +   G      + T L+N+Y+       A+ V
Sbjct: 140 PSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVV 199

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM--------NGTGTG----------- 178
           FD+   + I  WNAL      +G+ E     + +M        N   +G           
Sbjct: 200 FDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEAL 259

Query: 179 -----------IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR------------ 215
                      ++ D FT   +L AC         L  GK+IHA +LR            
Sbjct: 260 VIFSKMLNEPSLKPDNFTLASILSAC----ANLEKLNIGKQIHAYILRAETETSGAVGNA 315

Query: 216 ----HGYNGIVHI-----------------MTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
               +  +G V I                  T+L+D Y + G V  A  +F+++  ++VV
Sbjct: 316 LISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVV 375

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           +W+AMI  Y +NG+  +ALELFR M+ E  +  PNS T+ ++L   ++L  LE GK IH 
Sbjct: 376 AWTAMIVGYVQNGLWNDALELFRLMVNEGPE--PNSYTLAAMLSVSSSLTILEHGKQIHA 433

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGG 373
             ++ G  S   V +AL+ MYA+ G + + + VFD  + K+++VSW S+I +   HG G 
Sbjct: 434 SAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGK 493

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +AI +F+ M+  G+ P  I++V VL AC+H GLVE+G+  +  M + H I P++ HYACM
Sbjct: 494 EAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACM 553

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           +DL GRA  L+EA   IE + IEP    WGSLL SC+IH N +LA+ A++RL  ++P N+
Sbjct: 554 IDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNS 613

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           G Y+ LA+VY+A   W+   + ++L++ RG++K  G S I +K ++++F   D  HPQ +
Sbjct: 614 GAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKD 673

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           +++ L+  +  E+K+ G++P T+ VL+DL+ E KE+I+  HSEKLA+AFGL+NT +   +
Sbjct: 674 EIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTAL 733

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           RI KNLR+C DCHS  KFISK   +EI+VRD  RFHHF++G CSC DYW
Sbjct: 734 RIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 189/445 (42%), Gaps = 101/445 (22%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           +VH  +   G     +L+  L+  Y+   S+  A HVFD+   ++ + WN L       G
Sbjct: 31  SVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQG 90

Query: 161 RGEEVLELYRRM---------------NGTG--------------TGIRSDRFTYTYVLK 191
             E    L   M               N  G                +   +FT + VL 
Sbjct: 91  NFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLS 150

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           +C A+      L  G++IH+ V++ G    V + T+L++MYA+ G  + A  VF +M VK
Sbjct: 151 SCAANQT----LDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVK 206

Query: 252 NVVSWSA-------------------------------MIACYARNGMAFEALELFREMI 280
           N+ +W+A                               MI+ Y++ G   EAL +F +M+
Sbjct: 207 NISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKML 266

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
            E   L P++ T+ S+L ACA L  L  GK IH YILR   ++   V +AL++MYA+ G 
Sbjct: 267 NEP-SLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGG 325

Query: 341 LELGQCVFDH---------------------------------MDKRDVVSWNSLISSYG 367
           +E+ + + +H                                 +  RDVV+W ++I  Y 
Sbjct: 326 VEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYV 385

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES-MRKEHMIRPS 426
            +G    A+++F+ M+  G  P+  +  ++L   S   ++E GK +  S ++      PS
Sbjct: 386 QNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPS 445

Query: 427 VEHYACMVDLLGRANKLEEAAKIIE 451
           V +   ++ +  +   +  A ++ +
Sbjct: 446 VTN--ALIAMYAKTGNINVAKRVFD 468



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 155/341 (45%), Gaps = 69/341 (20%)

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
           G    S  F + ++L+  V     F+    G+ +H  +++ G +  V++M  L+  YA+ 
Sbjct: 4   GNSPTSSEF-FAHILQTSVRIKDPFA----GRSVHCQIIKKGLHLGVYLMNNLMTFYAKT 58

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNG------------------------MAFE 271
           G + +A  VF +M +K+  SW+ +I+ YA+ G                        + + 
Sbjct: 59  GSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYN 118

Query: 272 ALELFREMI-----MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
              LF   I     M S  + P+  T+ +VL +CAA   L+ G+ IH ++++ GL S +P
Sbjct: 119 QFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVP 178

Query: 327 VVSALVTMYARC-------------------------------GKLELGQCVFDHMDKRD 355
           V ++L+ MYA+C                               G+ EL    F+ M  RD
Sbjct: 179 VATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRD 238

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           +VSWNS+IS Y   GY  +A+ IF +M+    + P   +  S+L AC++   +  GK + 
Sbjct: 239 IVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIH 298

Query: 415 ES-MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
              +R E     +V +   ++ +  ++  +E A  I+E  R
Sbjct: 299 AYILRAETETSGAVGN--ALISMYAKSGGVEIARLIVEHNR 337



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 9/189 (4%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P P  +T   +L   +    L     +H+     G    P +   LI +Y+   +++ A+
Sbjct: 405 PEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAK 464

Query: 136 HVFD-KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
            VFD    ++ I  W ++  AL   G G+E + L+ RM     G++ D  TY  VL AC 
Sbjct: 465 RVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERM--LSVGMKPDHITYVGVLSACT 522

Query: 195 ASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-N 252
                  L++ G++ +  +   H     +     +ID+Y R G +  A      M ++ +
Sbjct: 523 H----VGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPD 578

Query: 253 VVSWSAMIA 261
            ++W +++A
Sbjct: 579 NIAWGSLLA 587



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           ME  +   +S     +LQ    +     G+ +H  I+++GL   + +++ L+T YA+ G 
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L     VFD M  +   SWN+LIS Y   G      ++ + ++Y      P+S+ +++  
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQG----NFEVSRRLLYEMPDCDPVSWTAIIVG 116

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPS 426
            +  GL +    +F  M  E  + PS
Sbjct: 117 YNQFGLFDNAIWMFAKMISER-VPPS 141


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/623 (37%), Positives = 369/623 (59%), Gaps = 10/623 (1%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPT-QHTYELLLLSCTHHNSLSDA 99
           ++ P  +S  +++E ++       LR + + L     P  +  Y  LL  CT    L   
Sbjct: 20  NSLPAPVSEDSEDESLKFPSNDLLLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQG 79

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
             VH+H+  + F  D  +   L+N+Y+   S+++AR VF+K  +R    W  L    +  
Sbjct: 80  RIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQH 139

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
            R  + L  + +M     G   + FT + V+KA  A   G      G ++H   ++ G++
Sbjct: 140 DRPCDALLFFNQM--LRFGYSPNEFTLSSVIKAAAAERRGCC----GHQLHGFCVKCGFD 193

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             VH+ + L+D+Y R+G +  A  VF  +  +N VSW+A+IA +AR     +ALELF+ M
Sbjct: 194 SNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGM 253

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           + +     P+  +  S+  AC++   LEQGK +H Y+++ G   +    + L+ MYA+ G
Sbjct: 254 LRDG--FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSG 311

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            +   + +FD + KRDVVSWNSL+++Y  HG+G +A+  F+EM   G+ P+ ISF+SVL 
Sbjct: 312 SIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLT 371

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           ACSH+GL++EG   +E M+K+ ++ P   HY  +VDLLGRA  L  A + IE++ IEP  
Sbjct: 372 ACSHSGLLDEGWHYYELMKKDGIV-PEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTA 430

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
            +W +LL +CR+H N EL   A++ +FEL+P + G +V+L ++YA+   W++  RV++ +
Sbjct: 431 AIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKM 490

Query: 520 EARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579
           +  G++K P  S +E++  ++ FV+ DE HPQ E++      + A++KE GYVP T  V+
Sbjct: 491 KESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVI 550

Query: 580 YDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKE 639
             +D +E+E  +  HSEK+A+AF L+NT  G TI I KN+R+C DCH+  K  SK   +E
Sbjct: 551 VHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGRE 610

Query: 640 ILVRDVNRFHHFRNGVCSCGDYW 662
           I+VRD NRFHHF++G CSC DYW
Sbjct: 611 IIVRDTNRFHHFKDGNCSCKDYW 633


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/601 (37%), Positives = 345/601 (57%), Gaps = 40/601 (6%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
           +L D   +H+     G   D F+ +++++    S   S+  AR +F + R+  I++ N L
Sbjct: 47  TLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTL 106

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
            RA   +    + +  Y  M  +   +  D  T+  +LKAC         L+ G+ IH+ 
Sbjct: 107 IRAYAFSPNPIDAVVFYSEMTESSV-VFPDVHTFPLLLKACSE----IPSLRLGEAIHSH 161

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ------------------------- 247
           V + G++  V +   L+ MYA  G +  AG VF +                         
Sbjct: 162 VFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSA 221

Query: 248 ------MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
                 M  ++VVSWS MI  Y +     E L LF++M+ E  +  PN   +V+ L ACA
Sbjct: 222 RRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIE--PNESVLVNALSACA 279

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            L A+EQG+ I  Y+ R+ +   + + +AL+ MY++CG +E    VF  M +++V++W++
Sbjct: 280 HLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSA 339

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +I+   ++G G  A+ +F +M   GV P+ ++F+ +L ACSH+ LV+EG   F SM   +
Sbjct: 340 MINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIY 399

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
            ++P+  H+ CMVDL GRA  L++A  +I+ +  +P   +WG+LL +CRIH + EL E+ 
Sbjct: 400 GLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQV 459

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS 541
            KRL EL+P + G YVLL+++YAA   WD V  ++R++  R + K PG S I++   ++ 
Sbjct: 460 GKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHE 519

Query: 542 FVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVA 601
           FV+ D  HPQ E ++A L  +S E+K  GY P T  VL D+D EEKE  +  HSEKLA+A
Sbjct: 520 FVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIA 579

Query: 602 FGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
           FGLI T  G TIRITKNLR+C DCHS TK ISK  N+EI+VRD  RFHHFR+G CSC D+
Sbjct: 580 FGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDF 639

Query: 662 W 662
           W
Sbjct: 640 W 640



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 146/339 (43%), Gaps = 41/339 (12%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  HT+ LLL +C+   SL     +HSH+   G+  +  +   L+ +Y+    ++ A  V
Sbjct: 134 PDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLV 193

Query: 138 FDKT------------------------RR-------RTIYVWNALFRALTLAGRGEEVL 166
           FD+T                        RR       R +  W+ +        R +E L
Sbjct: 194 FDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGL 253

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            L++ M   G  I  +       L AC         ++ G+ I   + R      V + T
Sbjct: 254 GLFQDM--MGEKIEPNESVLVNALSACAH----LGAMEQGQWIERYMERKNVRLTVRLGT 307

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LIDMY++ G V  A  VF +M  KNV++WSAMI   A NG   +AL LF +M M+   +
Sbjct: 308 ALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQG--V 365

Query: 287 CPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
            PN VT + +L AC+    +++G    H      GL         +V +Y R G L+  Q
Sbjct: 366 KPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQ 425

Query: 346 CVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            V   M  K +   W +L+++  +HG      Q+ K ++
Sbjct: 426 TVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLL 464



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 21/219 (9%)

Query: 55  LIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    ++   ++ L    D++  +  P +      L +C H  ++     +  ++    
Sbjct: 239 MINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKN 298

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
                 L T LI++YS   SV+ A  VF K + + +  W+A+   L + G+G++ L L+ 
Sbjct: 299 VRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFS 358

Query: 171 RMNGTGTGIRSDRFTYTYVLKAC-----VASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           +M     G++ +  T+  +L AC     V   C F         H+    +G     H  
Sbjct: 359 QME--MQGVKPNEVTFIGILNACSHSKLVDEGCSF--------FHSMTSIYGLKPNAHHH 408

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-AC 262
             ++D+Y R G +  A  V   M  K N   W A++ AC
Sbjct: 409 CCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNAC 447


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/585 (37%), Positives = 345/585 (58%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P Q TY  +L +CT   +L     +H+ +   GF  + ++ + LI++Y+    +D A  +
Sbjct: 413 PNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVI 472

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
                   +  W AL           E L+ ++ M     GI+SD   ++  + AC    
Sbjct: 473 LRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEM--LNRGIQSDNIGFSSAISACA--- 527

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G   L  G++IHA     GY+  + I   L+ +YAR G +  A   F ++  K+ +SW+
Sbjct: 528 -GIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWN 586

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            +I+ +A++G   +AL++F +M      L  +  T  S + A A +A ++QGK IH  I+
Sbjct: 587 GLISGFAQSGYCEDALKVFAQM--NRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMII 644

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           +RG DS + V +AL+T YA+CG +E  +  F  M +++ VSWN++I+ Y  HGYG +A+ 
Sbjct: 645 KRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVN 704

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F++M   G  P+ ++FV VL ACSH GLV +G   FESM KEH + P   HYAC+VDL+
Sbjct: 705 LFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLI 764

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            RA  L  A K IE++ IEP   +W +LL +C +H NVE+ E A++ L ELEP ++  YV
Sbjct: 765 SRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYV 824

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++YA +  WD   + ++++  RG++K PGRS IEVK  +++F   D  HP  ++++ 
Sbjct: 825 LLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYE 884

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  L+ +  E GY      +L D++ E+K+  V  HSEKLA+ FGL++ S    I + K
Sbjct: 885 FLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMK 944

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C+DCHS+ KF+SK +N+ I+VRD  RFHHF  G+CSC DYW
Sbjct: 945 NLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 207/473 (43%), Gaps = 41/473 (8%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
            TY  LL  C +  SL +   +H  +   GF  +  L  KL++VY     +D    VF+ 
Sbjct: 11  QTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFED 70

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
              R++  W+ +            VL+L+  M      +     ++  VL+AC     G 
Sbjct: 71  MPNRSVRSWDKIISGFMEKKMSNRVLDLFSCM--IEENVSPTEISFASVLRACSGHRIG- 127

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             +++ ++IHA ++ HG      I   LI +YA+ G ++ A  VF  +  K+ VSW AMI
Sbjct: 128 --IRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMI 185

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           + +++NG   EA+ LF EM   +  + P      SVL  C  +   + G+ +H  + + G
Sbjct: 186 SGFSQNGYEEEAIHLFCEM--HTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYG 243

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
                 V +ALVT+Y+R       + VF  M  +D VS+NSLIS     G+   A+++F 
Sbjct: 244 SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFT 303

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK--------------------- 419
           +M    + P  ++  S+L AC+  G + +G+ L   + K                     
Sbjct: 304 KMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCS 363

Query: 420 ------EHMIRPSVEH---YACMVDLLGRANKLEEAAKIIEDLRIE---PGPKVWGSLLG 467
                 E  +    E+   +  M+   G+ + L E+ +I   ++I+   P    + S+L 
Sbjct: 364 DIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILR 423

Query: 468 SCRIHCNVELAERASKRLFELE-PTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
           +C     ++L E+   ++ +     N     +L D+YA     D    + R L
Sbjct: 424 TCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTL 476



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 136/561 (24%), Positives = 258/561 (45%), Gaps = 53/561 (9%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PT + +  +L  CT          +H+ +   G   + ++   L+ +YS   +   A  V
Sbjct: 211 PTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKV 270

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F K + +    +N+L   L   G  +  LEL+ +M      ++ D  T   +L AC ++ 
Sbjct: 271 FSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDY--LKPDCVTVASLLSACASNG 328

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  G+++H+ V++ G +  + +   L+D+Y     +  A  +F     +NVV W+
Sbjct: 329 A----LCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWN 384

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            M+  + +     E+  +FR+M ++   L PN  T  S+L+ C ++ AL+ G+ IH  ++
Sbjct: 385 VMLVAFGKLDNLSESFRIFRQMQIKG--LIPNQFTYPSILRTCTSVGALDLGEQIHTQVI 442

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G    + V S L+ MYA+ GKL+    +   + + DVVSW +LIS Y  H    +A++
Sbjct: 443 KTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALK 502

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHMIRPSVEHYACMVDL 436
            FKEM+  G+    I F S + AC+    + +G+ +  +S    +    S+ +   +V L
Sbjct: 503 HFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGN--ALVSL 560

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKV-WGSLLG--SCRIHCNVELAERASKRLFELEPTNA 493
             R  +++EA   +E  +I+    + W  L+   +   +C   L   A     +LE   A
Sbjct: 561 YARCGRIKEA--YLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLE---A 615

Query: 494 GNYVLLADVYAAADMWD--EVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV----SVDE 547
             +   + V AAA++ +  + K++  ++  RG       S IEV   + +F     S+++
Sbjct: 616 SFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFD-----SDIEVSNALITFYAKCGSIED 670

Query: 548 FHPQFEQL--------HALL------------INLSAEMKEKGYVPQTKVVLYDLDAEEK 587
              +F ++        +A++            +NL  +MK+ G +P     +  L A   
Sbjct: 671 ARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSH 730

Query: 588 ERIV---LGHSEKLAVAFGLI 605
             +V   LG+ E ++   GL+
Sbjct: 731 VGLVTKGLGYFESMSKEHGLV 751



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 150/355 (42%), Gaps = 51/355 (14%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDAL-------------- 100
           LI    K G L  A  +L         ++  L+     HN  ++AL              
Sbjct: 456 LIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSD 515

Query: 101 ---------------------NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
                                 +H+    +G+ +D  +   L+++Y+    + +A   F+
Sbjct: 516 NIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFE 575

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           K   +    WN L      +G  E+ L+++ +MN      R+      +   + V+++  
Sbjct: 576 KIDAKDSISWNGLISGFAQSGYCEDALKVFAQMN------RAKLEASFFTFGSAVSAAAN 629

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
            + +K GK+IHA +++ G++  + +   LI  YA+ G +  A   F +M  KN VSW+AM
Sbjct: 630 IANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAM 689

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI--- 316
           I  Y+++G   EA+ LF +M        PN VT V VL AC+ +  + +G    GY    
Sbjct: 690 ITGYSQHGYGNEAVNLFEKMKQVGE--MPNHVTFVGVLSACSHVGLVTKGL---GYFESM 744

Query: 317 -LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
               GL       + +V + +R G L   +   + M  + D   W +L+S+  VH
Sbjct: 745 SKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVH 799



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 63/122 (51%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           ME   +C N  T + +L  C    +L + K +HG IL+ G  +   + + LV +Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L+    VF+ M  R V SW+ +IS +       + + +F  MI   VSP+ ISF SVL A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 401 CS 402
           CS
Sbjct: 121 CS 122


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/619 (38%), Positives = 372/619 (60%), Gaps = 14/619 (2%)

Query: 46  SLSSRNKNELIQSLCKQGNLRQALD-VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHS 104
           SL++   +  + +    G +R  LD V + E   T   Y  L+ +C  + SL DA  +H+
Sbjct: 29  SLTASVADIPVPAAASTGIIRDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHA 88

Query: 105 HLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
           HL  + F    FL   LI++Y    +V DAR VFD    R +  W +L          +E
Sbjct: 89  HLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDE 148

Query: 165 VLELYRRMNGTGTG-IRSDRFTYTYVLKACVAS-SCGFSLLKHGKEIHASVLRHGYNGIV 222
            L L   + G   G  + + FT+  +LKA  AS S G      G++IHA  +++ ++  V
Sbjct: 149 ALGL---LPGMLRGRFKPNGFTFASLLKAAGASASSGI-----GEQIHALTVKYDWHDDV 200

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
           ++ + L+DMYAR G +  A  VF Q+  KN VSW+A+IA +AR G     L +F EM  +
Sbjct: 201 YVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEM--Q 258

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
            +       T  SV  A A + ALEQGK +H ++++ G      V + ++ MYA+ G + 
Sbjct: 259 RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMI 318

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
             + VFD +DK+DVV+WNS+++++  +G G +A+  F+EM   GV  + I+F+S+L ACS
Sbjct: 319 DARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACS 378

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
           H GLV+EGK  F+ M KE+ + P ++HY  +VDLLGRA  L +A   I  + ++P   VW
Sbjct: 379 HGGLVKEGKQYFD-MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVW 437

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
           G+LLGSCR+H N ++ + A+  +FEL+P + G  VLL ++YA+   WD   RV+++++A 
Sbjct: 438 GALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKAT 497

Query: 523 GLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
           G++K P  S +E++  ++ FV+ D+ HP+ E+++     +S ++++ GYVP T  VL  +
Sbjct: 498 GVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHV 557

Query: 583 DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILV 642
           D +E++  +  HSEK+A+AF LIN   G TIRI KN+R+C DCHS  ++ISK   +EI+V
Sbjct: 558 DEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVV 617

Query: 643 RDVNRFHHFRNGVCSCGDY 661
           RD NRFHHF +G CSCGDY
Sbjct: 618 RDTNRFHHFSSGSCSCGDY 636


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/619 (37%), Positives = 367/619 (59%), Gaps = 21/619 (3%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++++    G   +A+D+      +       TY  +L  C           VH  +  
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVR 160

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF  D F+   L+++Y+    + DA  VFD+   R +  W A+      A R  + L L
Sbjct: 161 TGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALML 220

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGK---EIHASVLRHGYNGIVHIM 225
           +R+M   G       F    +    VAS+ G   L  G+    +H   + +G+ G V + 
Sbjct: 221 FRKMQEEG-------FLGDEITAISVASAVG--QLGDGRMAISVHGYAVLNGFIGDVSVG 271

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
            +++ MYA+ G V  A  VF +M  +N +SW++M++ Y +NG   +AL LF +M  ++ +
Sbjct: 272 NSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQM--QASE 329

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
             PN VT + ++ AC+ L +   G+ +H +++   +D    + +A++ MY +CG L+   
Sbjct: 330 CDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAV 389

Query: 346 CVFDH--MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
            +F++  + +RDV SWN LIS YGVHG+G +A+++F  M   GV P+ I+F S+L ACSH
Sbjct: 390 EMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSH 449

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
           AGL++EG+  F  M K   +RP ++HYACMVD+LGRA  L EA ++I+ +   P  +VWG
Sbjct: 450 AGLIDEGRKCFADMTKLS-VRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWG 508

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           +LL +CRIH N EL E A+  LF+LEP + G YVL++++YAA++ W EV+ V++ +++RG
Sbjct: 509 ALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRG 568

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
           L+K    S IE   +++ F + D+  P + +++  + +L+ EMK  GYVP    VL+D++
Sbjct: 569 LKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVE 628

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            E+KE ++  HSEKLAVAFG++   +G  I++TKNLR+C DCH   KFIS    ++I+VR
Sbjct: 629 PEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVR 688

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D NRFHHF+ G CSCGDYW
Sbjct: 689 DGNRFHHFQGGRCSCGDYW 707



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/403 (30%), Positives = 200/403 (49%), Gaps = 22/403 (5%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD-QDPFLVTKLINVYSHFDSVDDARHVF 138
            H Y+ LL  CT   SL+    +HS L+  GF    P  + +LI +YS    +  AR +F
Sbjct: 25  HHFYDHLLQCCT---SLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLF 81

Query: 139 DK--------TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           D         T+    ++ N + RA   AGR  E ++LY  M   G G+  + FTY +VL
Sbjct: 82  DHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGV--NNFTYPFVL 139

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
           K C AS  G      G+ +H  V+R G+   + +   L+DMYA+ G +  A  VF +M +
Sbjct: 140 KVC-ASELGAVF---GEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLI 195

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           ++VV W+AMI  Y +     +AL LFR+  M+      + +T +SV  A   L       
Sbjct: 196 RDVVCWTAMITLYEQAERPLKALMLFRK--MQEEGFLGDEITAISVASAVGQLGDGRMAI 253

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +HGY +  G    + V +++V MYA+CG +E  + VFD M++R+ +SWNS++S Y  +G
Sbjct: 254 SVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNG 313

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
               A+ +F +M      P+P++ + ++ ACS+ G    G+ L   +    M   +    
Sbjct: 314 RPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN 373

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRI-EPGPKVWGSLLGSCRIH 472
           A M D+  +   L+ A ++  +  + E     W  L+    +H
Sbjct: 374 AIM-DMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVH 415


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/597 (40%), Positives = 355/597 (59%), Gaps = 21/597 (3%)

Query: 75  EPN-----PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH-- 127
           EPN     P   +   L+  CT   SL +   + ++ T      +P ++TKLIN  +   
Sbjct: 25  EPNTAALEPPSSSILSLIPKCT---SLRELKQIQAY-TIKTHQNNPTVLTKLINFCTSNP 80

Query: 128 -FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
              S+D A  +FDK  +  I ++N + R           + L  ++    +G+  D +T+
Sbjct: 81  TIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQV--LCSGLLPDDYTF 138

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
           + +LKAC         L+ GK++H   ++ G    +++  TLI+MY     V  A  VF 
Sbjct: 139 SSLLKACAR----LKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFD 194

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
           ++    VV+++A+I   ARN    EAL LFRE+  +   L P  VTM+  L +CA L AL
Sbjct: 195 KIGEPCVVAYNAIITSCARNSRPNEALALFREL--QESGLKPTDVTMLVALSSCALLGAL 252

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
           + G+ IH Y+ + G D  + V +AL+ MYA+CG L+    VF  M +RD  +W+++I +Y
Sbjct: 253 DLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAY 312

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
             HG+G +AI + +EM    V P  I+F+ +L ACSH GLVEEG   F SM  E+ I PS
Sbjct: 313 ATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPS 372

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF 486
           ++HY CM+DLLGRA +LEEA K I++L I+P P +W +LL SC  H NVE+A+   +R+F
Sbjct: 373 IKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIF 432

Query: 487 ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD 546
           EL+ ++ G+YV+L+++ A    WD+V  +++++  +G  KVPG S IEV   ++ F S D
Sbjct: 433 ELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGD 492

Query: 547 EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY-DLDAEEKERIVLGHSEKLAVAFGLI 605
             H     LH  L  L  E+K  GYVP T +V Y D++ EEKE ++  HSEKLA+ +GL+
Sbjct: 493 GVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLL 552

Query: 606 NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NT  G TIR+ KNLR+C DCH+  KFIS    ++I++RDV RFHHF++G CSCGDYW
Sbjct: 553 NTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/582 (40%), Positives = 355/582 (60%), Gaps = 12/582 (2%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR 144
           LL L  +H  +L DAL + S +          L++ L     H  S   AR +FD+  +R
Sbjct: 68  LLHLLSSHPATLPDALALFSSIAAPDICSHNTLISALSRSPRHLPS---ARELFDRMPQR 124

Query: 145 TIYVWNALFRALTLAGRGEEVLELYRRMNG-TGTGIRSDRFTYTYVLKACVASSCGFSLL 203
             + W+AL    T  G+ E  L LYRRM    G     + FT +  L A  A+ CG    
Sbjct: 125 DHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCG---- 180

Query: 204 KHGKEIHASVLRHGYN---GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           + G+E+H  V+R G +   G   + + L DMYA+ G V  A  VF +M V++ VSW+AM+
Sbjct: 181 RAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMV 240

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             Y   G   E   LF  M + +  + PN  T   VL+ACA  A    G+ +HG + + G
Sbjct: 241 ERYFDGGRGGEGFRLFLHM-LRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSG 299

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
                   SAL+ MY++CG +     VF+ M K D+VSW ++IS Y  +G   +A++ F 
Sbjct: 300 TGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFD 359

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
             +  G+ P  ++FV VL AC+HAGLV++G  +F S+++++ I  + +HYAC++DLL R+
Sbjct: 360 MFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRS 419

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            + E A K+I ++ ++P   +W SLLG CRIH NV LA RA++ LFE+EP N   YV LA
Sbjct: 420 GQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLA 479

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YA+  ++DEV+ V+R++E++G+ K+P  S IEV R+++ F+  D+ HP+ ++++ALL 
Sbjct: 480 NIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLK 539

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            L  +M E+GYV   + VL+D++ E+KE+ +  HSE+LAVAFG+I T +G  I++ KNLR
Sbjct: 540 KLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEGSPIKVFKNLR 599

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH+  K IS+   ++I+VRD NRFHHF++G+CSC DYW
Sbjct: 600 ICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/570 (40%), Positives = 339/570 (59%), Gaps = 9/570 (1%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
           S+ +   VH+H+   G   D F  + L+     S + S++ A  +F +      + +N +
Sbjct: 43  SMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTM 102

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
            R    +   EE L LY  M     GI  D FTY +VLKAC         LK G +IHA 
Sbjct: 103 IRGNVNSMDLEEALLLYVEM--LERGIEPDNFTYPFVLKACSL----LVALKEGVQIHAH 156

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
           V   G    V +   LI MY + G + +AG VF QM  K+V SWS++I  +A   M  E 
Sbjct: 157 VFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHEC 216

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
           L L  +M  E       S+ +VS L AC  L +   G+ IHG +LR   +  + V ++L+
Sbjct: 217 LMLLGDMSREGRHRAEESI-LVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLI 275

Query: 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI 392
            MY +CG LE G CVF +M  ++  S+  +I+   +HG G +A+++F +M+  G++P  +
Sbjct: 276 DMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDV 335

Query: 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
            +V VL ACSHAGLV+EG   F  M+ EHMI+P+++HY CMVDL+GRA  L+EA  +I+ 
Sbjct: 336 VYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKS 395

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
           + I+P   VW SLL +C++H N+E+ E A+  +F+L   N G+Y++LA++YA A  W  V
Sbjct: 396 MPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLANMYARAQKWANV 455

Query: 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV 572
            R++  +  + L + PG S +E  R +Y FVS D+  PQ E ++ ++  +  ++K +GY 
Sbjct: 456 ARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYT 515

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
           P    VL D+D +EK + +  HS+KLA+AF LI TS+G  +RI++NLR+C DCH++TKFI
Sbjct: 516 PDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFI 575

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           S    +EI VRD NRFHHF++G CSC DYW
Sbjct: 576 SVIYEREITVRDSNRFHHFKDGTCSCKDYW 605



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 180/401 (44%), Gaps = 46/401 (11%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+      +L +AL    ++L     P   TY  +L +C+   +L + + +H+H+ +
Sbjct: 100 NTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFN 159

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G + D F+   LI++Y    +++ A  VF++   +++  W+++  A        E L L
Sbjct: 160 AGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLML 219

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
              M+  G   R++       L AC  +  G   L  G+ IH  +LR+     V + T+L
Sbjct: 220 LGDMSREGRH-RAEESILVSALSAC--THLGSPNL--GRCIHGILLRNISELNVVVKTSL 274

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY + G +     VF  MA KN  S++ MIA  A +G   EAL +F +M+ E   L P
Sbjct: 275 IDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEG--LTP 332

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + V  V VL AC+           H  +++ G                +C      +  F
Sbjct: 333 DDVVYVGVLSACS-----------HAGLVKEGF---------------QC----FNRMQF 362

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           +HM K  +  +  ++   G  G   +A  + K M    + P+ + + S+L AC     +E
Sbjct: 363 EHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSM---PIKPNDVVWRSLLSACKVHHNLE 419

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
            G++  +++ K +   P    Y  + ++  RA K    A+I
Sbjct: 420 IGEIAADNIFKLNKHNPG--DYLVLANMYARAQKWANVARI 458


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/592 (38%), Positives = 351/592 (59%), Gaps = 43/592 (7%)

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
           L D   ++D    T +I  Y   + +D A+   + T ++    WNA+       G   E 
Sbjct: 214 LFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEA 273

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI---- 221
            E++R+M    + I+ D FT+T V+  C  + C     + GKE+HA  L+   N      
Sbjct: 274 FEMFRKM--IMSKIQLDEFTFTSVISVCANAGC----FRLGKEMHAYFLKTVANPAPDVA 327

Query: 222 VHIMTTLIDMYARFGCV--------------------MYAGFV-----------FSQMAV 250
           + +   LI  Y + G V                    + +G+V           F++M  
Sbjct: 328 MPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPE 387

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           KN++SW  MI+  A+ G A EAL+ F  M ++  + C         + +C+ L +L+ G+
Sbjct: 388 KNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPC--DYAFAGAIISCSVLGSLKHGR 445

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +H  ++R G +S L   +AL+TMYARCG ++   C+F +M   D +SWN++I++ G HG
Sbjct: 446 QLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHG 505

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
            G +AI++F+EM+  G+ P  ISF++V+ ACSHAGLV+EG+  F+SM   + + P  EHY
Sbjct: 506 QGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHY 565

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
           A ++DLL RA K  EA +++E +  EPG  +W +LL  CRIH N++L   A++RLFEL+P
Sbjct: 566 ARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKP 625

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
            + G YVLL+++YA A  W+++ +V++L+  RG++K PG S IEV+ K++SF+  D  HP
Sbjct: 626 QHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHP 685

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           +  Q++  L  L  EM++ GYVP TK VL+D++++ KE  +  HSEKLAVA+G +    G
Sbjct: 686 EVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHG 745

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            T+R+ KNLR+C DCH+  KF+SK   +EI+VRD  RFHHFR+G CSCGDYW
Sbjct: 746 ATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 175/415 (42%), Gaps = 90/415 (21%)

Query: 83  YELLLLSCTHHNSLSDALN--VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           Y  LL  C   + +S +L   VH+H+  +GF     ++ +LI++YS    ++ AR++FD+
Sbjct: 14  YGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDE 73

Query: 141 TRRRTIYVWNALFRALTLAGR---------------------------------GEEVLE 167
             +  I     L  A + AG                                  G   +E
Sbjct: 74  IPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIE 133

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+  M       R D +T+T VL A    +      KH +++H +V++ G   +  ++  
Sbjct: 134 LFCDMQRDN--FRPDNYTFTSVLGALALVA---EKEKHCQQLHCAVVKSGTGFVTSVLNA 188

Query: 228 LIDMYAR---------FGCVMYAGFVFSQMA--------------VKNV----------- 253
           LI  Y +            +  A  +F +M               VKN            
Sbjct: 189 LISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNG 248

Query: 254 ------VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
                 V+W+AMI+ YA  G+  EA E+FR+MIM    L  +  T  SV+  CA      
Sbjct: 249 TSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQL--DEFTFTSVISVCANAGCFR 306

Query: 308 QGKMIHGYILRR----GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
            GK +H Y L+       D  +PV +AL+T Y +CGK+++ Q +F+ M +RD+VSWN ++
Sbjct: 307 LGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIIL 366

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           S Y       +A   F EM    +    +S++ ++   +  G  EE    F  M+
Sbjct: 367 SGYVNVRCMDEAKSFFNEMPEKNI----LSWIIMISGLAQIGFAEEALKFFNRMK 417



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 132/312 (42%), Gaps = 80/312 (25%)

Query: 175 TGTGIRSDRFTYTYVLK-ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
           T   IR+    Y  +L+  C+ S   +SL    + +HA ++  G+    HI+  LID+Y+
Sbjct: 3   TPDSIRTAANRYGSLLQICCLQSPISYSL---ARPVHAHMIASGFQPRGHILNRLIDIYS 59

Query: 234 RFGCVMYAGFVFSQMAVKNVVS---------------------------------WSAMI 260
           +   + YA ++F ++   ++V+                                 ++AMI
Sbjct: 60  KSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMI 119

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRR 319
             Y+ N     A+ELF +  M+  +  P++ T  SVL A A +A  E+  + +H  +++ 
Sbjct: 120 TAYSHNHDGHAAIELFCD--MQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKS 177

Query: 320 GLDSILPVVSALVTMYARCGK---------LELGQCVFDHMDKRDV-------------- 356
           G   +  V++AL++ Y +C           +   + +FD M  RD               
Sbjct: 178 GTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNN 237

Query: 357 -----------------VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
                            V+WN++IS Y   G   +A ++F++MI   +     +F SV+ 
Sbjct: 238 DLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVIS 297

Query: 400 ACSHAGLVEEGK 411
            C++AG    GK
Sbjct: 298 VCANAGCFRLGK 309



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 8/186 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  + +   ++SC+   SL     +H+ +   G++        LI +Y+    VD A  +
Sbjct: 423 PCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCL 482

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F          WNA+  AL   G+G + +EL+  M     GI  DR ++  V+ AC  S 
Sbjct: 483 FINMPCVDAISWNAMIAALGQHGQGTQAIELFEEM--LKEGILPDRISFLTVISAC--SH 538

Query: 198 CGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVS 255
            G  L+K G++   S+   +G N        +ID+  R G    A  V   M  +     
Sbjct: 539 AG--LVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPI 596

Query: 256 WSAMIA 261
           W A++A
Sbjct: 597 WEALLA 602


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/614 (37%), Positives = 369/614 (60%), Gaps = 15/614 (2%)

Query: 55  LIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           LI  L K     +A+DV       + +PN    T   +L +  +   +  A +VH     
Sbjct: 93  LISGLAKNDCFVEAIDVFREMTMGNFKPNAV--TISSVLPAFANLGLIRIAKSVHCFWVR 150

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF+ + F+ T L+++YS F  +  AR +F+    R +  WNA+    +  G  EE ++L
Sbjct: 151 GGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDL 210

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M   G  +  D +T   ++ A ++  C    L+ G  IH  ++R GY    HI T L
Sbjct: 211 FNLMRRKG--LLVDFYTIMSLIPASLSVGC----LQVGTGIHGFIIRTGYENDKHIKTAL 264

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +D+Y    CV  A  VFS+M VK+V +W+ M+  ++       A++ F +M +   +L  
Sbjct: 265 MDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKM-LGIQNLKL 323

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +S+ ++ +L +C+   AL+QG+ +H   ++    + + V SA++ MYA CG LE  +  F
Sbjct: 324 DSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFF 383

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             M ++DVV WN++I+  G++GYG  AI +F +M   G+ P   +FVSVL ACSHAG+V 
Sbjct: 384 YGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVY 443

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG  +F  M K     P+++HYAC++D+LGRA +L+ A   I ++  +P   V+ +LLG+
Sbjct: 444 EGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGA 503

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH N++L    S+++FE+EP +AG YVLL+++YA A  W+ VK  +  L ++ L+K P
Sbjct: 504 CRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDP 563

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S IE+ +++Y+F++ ++ HPQ+ ++  +L  L  ++K+ GYVP T V+L D+  + K+
Sbjct: 564 GFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKK 623

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
            I+  HSEK+A+AFGL+ T  G  IRITKNLR C DCHS +KF+SK   + ++++D NRF
Sbjct: 624 DILYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRF 683

Query: 649 HHFRNGVCSCGDYW 662
           H F++GVCSC DYW
Sbjct: 684 HVFQDGVCSCRDYW 697



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 193/384 (50%), Gaps = 19/384 (4%)

Query: 74  IEPNPTQHTYELLLLSCTHHN------SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH 127
           +  NPTQ    L  L+ +H +       L     +H+ +  +G   + FL   L+N Y +
Sbjct: 12  LSSNPTQ---RLCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVY 68

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
              + DA+ +F  T  + +  W  L   L       E ++++R M  T    + +  T +
Sbjct: 69  CGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREM--TMGNFKPNAVTIS 126

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
            VL A         L++  K +H   +R G+ G V + T L+DMY++FGC+  A  +F  
Sbjct: 127 SVLPAFA----NLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFES 182

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M+ +NVVSW+A+++ Y+ +G + EA++LF   +M    L  +  T++S++ A  ++  L+
Sbjct: 183 MSERNVVSWNAIVSGYSDHGFSEEAIDLFN--LMRRKGLLVDFYTIMSLIPASLSVGCLQ 240

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G  IHG+I+R G ++   + +AL+ +Y     ++    VF  M  +DV +W  +++ + 
Sbjct: 241 VGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFS 300

Query: 368 VHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
              +  +AI+ F +M+    +    I  + +L +CSH+G +++G+ +  ++  +     +
Sbjct: 301 SGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRV-HALAIKTCFANN 359

Query: 427 VEHYACMVDLLGRANKLEEAAKII 450
           +   + ++D+      LE+A +  
Sbjct: 360 IFVGSAVIDMYANCGNLEDAKRFF 383


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/591 (38%), Positives = 354/591 (59%), Gaps = 24/591 (4%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           TQ TY  ++  C +   L+ A  +HS +  +GF     ++T L + YS    + DA ++F
Sbjct: 301 TQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIF 360

Query: 139 DKTR-RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR-----FTYTYVLKA 192
             T   R +  W A+       G     + L+ RM       R DR     FTY+ +LKA
Sbjct: 361 SMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM-------REDRVMPNEFTYSAMLKA 413

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
                   S+L    +IHA V++  Y  I  + T L+  Y++FG    A  +F  +  K+
Sbjct: 414 ------SLSILP--PQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKD 465

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA-LEQGKM 311
           VV+WSAM++C+A+ G    A  LF +M ++   + PN  T+ SV+ ACA  +A ++QG+ 
Sbjct: 466 VVAWSAMLSCHAQAGDCEGATYLFNKMAIQG--IKPNEFTISSVIDACACPSAGVDQGRQ 523

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
            H   ++      + V SALV+MY+R G ++  Q VF+    RD+VSWNS+IS Y  HGY
Sbjct: 524 FHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGY 583

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             KAI+ F++M   G+    ++F++V+  C+H GLV EG+  F+SM ++H I P++EHYA
Sbjct: 584 SMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYA 643

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           CMVDL  RA KL+E   +I D+    G  VW +LLG+CR+H NVEL + ++ +L  LEP 
Sbjct: 644 CMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPH 703

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
           ++  YVLL+++YAAA  W E   V++L++ R ++K  G S I++K K++SF++ D+ HP 
Sbjct: 704 DSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPM 763

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
            +Q++  L  +   +K+ GY P T  VL+D+  ++KE +++ HSE+LA+AFGLI T  G 
Sbjct: 764 SDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGT 823

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            ++I KNLR+C DCH   K +S   ++EI++RD +RFHHF  G CSCGD+W
Sbjct: 824 PLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 195/397 (49%), Gaps = 22/397 (5%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           I PNP   T+  +L +     +L     VH+     G     F+   L+N+Y+    V+D
Sbjct: 197 IWPNP--FTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVED 254

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT-GTGIRSDRFTYTYVLKA 192
           A+ VF+    R +  WN L   L L     E L+L+     T G   +S   TY  V+K 
Sbjct: 255 AKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQS---TYATVIKL 311

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ-MAVK 251
           C         L   +++H+ VL+HG++   ++MT L D Y++ G +  A  +FS     +
Sbjct: 312 CA----NLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSR 367

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           NVVSW+A+I+   +NG    A+ LF    M    + PN  T  ++L+A  ++   +    
Sbjct: 368 NVVSWTAIISGCIQNGDIPLAVVLFSR--MREDRVMPNEFTYSAMLKASLSILPPQ---- 421

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           IH  +++     I  V +AL+  Y++ G  E    +F  ++++DVV+W++++S +   G 
Sbjct: 422 IHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGD 481

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACS--HAGLVEEGKMLFESMRKEHMIRPSVEH 429
              A  +F +M   G+ P+  +  SV+ AC+   AG V++G+  F ++  ++    ++  
Sbjct: 482 CEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAG-VDQGRQ-FHAISIKYRYHDAICV 539

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
            + +V +  R   + ++A+I+ + + +     W S++
Sbjct: 540 SSALVSMYSRKGNI-DSAQIVFERQTDRDLVSWNSMI 575



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 140/283 (49%), Gaps = 9/283 (3%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           T L+++Y    SV +   VF+   ++ +  W +L      A    EV+ L+ RM     G
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR--AEG 196

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           I  + FT+  VL A VAS     L   G+ +HA  ++ G    V +  +L++MYA+ G V
Sbjct: 197 IWPNPFTFASVLSA-VASQGALDL---GQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLV 252

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
             A  VF+ M  +++VSW+ ++A    N    EAL+LF E       +  +  T  +V++
Sbjct: 253 EDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQS--TYATVIK 310

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD-HMDKRDVV 357
            CA L  L   + +H  +L+ G      V++AL   Y++CG+L     +F      R+VV
Sbjct: 311 LCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVV 370

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           SW ++IS    +G    A+ +F  M    V P+  ++ ++L A
Sbjct: 371 SWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 183/393 (46%), Gaps = 26/393 (6%)

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDD---------ARHVFDKTRRRTIYVW-NALFRALTL 158
           N  +  P  V KL+   +    V+D         AR+  D+  RR   V  N +      
Sbjct: 17  NAVNLAPEQVPKLLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYAR 76

Query: 159 AGRGEEVLELY---RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
            G   EVL+ +   RR      G+  D  T + VLKAC   S    +L  G+++H   ++
Sbjct: 77  RGMVPEVLDQFSVARR-----GGVLVDSATLSCVLKAC--RSVPDRVL--GEQLHCLCVK 127

Query: 216 HGYN-GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
            G++ G V   T+L+DMY + G V     VF  M  KNVV+W++++   A   M  E + 
Sbjct: 128 CGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMA 187

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           LF  M  E   + PN  T  SVL A A+  AL+ G+ +H   ++ G  S + V ++L+ M
Sbjct: 188 LFFRMRAEG--IWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNM 245

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           YA+CG +E  + VF+ M+ RD+VSWN+L++   ++    +A+Q+F E        +  ++
Sbjct: 246 YAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTY 305

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
            +V+  C++   +   + L   + K H    +      + D   +  +L +A  I     
Sbjct: 306 ATVIKLCANLKQLALARQLHSCVLK-HGFHLTGNVMTALADAYSKCGELADALNIFSMTT 364

Query: 455 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
                  W +++  C  + ++ LA     R+ E
Sbjct: 365 GSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRE 397


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/583 (40%), Positives = 355/583 (60%), Gaps = 19/583 (3%)

Query: 86  LLLSCTHHNSLSD--ALNVHSHLTDNGFDQDPFLVTKLINVYS---HFDSVDDARHVFDK 140
           LL  CT    L    A  + +HL       D  ++TK IN  S      S+  A H+FD+
Sbjct: 26  LLPKCTSLRELKQLQAFAIKTHL-----HSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQ 80

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
             +  I ++N + R             L+ ++    +G+  D +T+  +LKAC  +SC  
Sbjct: 81  IPQPDIVLFNTMARGYARTDTPLRAFTLFTQI--LFSGLFPDDYTFPSLLKAC--ASC-- 134

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             L+ G+++H   ++ G +  V++  TLI+MY     +  A  VF ++    VV+++AMI
Sbjct: 135 KALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMI 194

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             YAR     EAL LFRE+  ++ +L P  VTM+SVL +CA L AL+ GK +H Y+ + G
Sbjct: 195 TGYARGSRPNEALSLFREL--QARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNG 252

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
            +  + V +AL+ MYA+CG L+   CVF++M  RD  +W+++I +Y +HG+G KA+ +FK
Sbjct: 253 FNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFK 312

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           EM   G  P  I+F+ +L ACSH GLVEEG   F  MR ++ + P ++HY CMVDLLGRA
Sbjct: 313 EMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRA 372

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            +LEEA + I  L I P P +W +LL +C  H NVEL +R  +++FEL+ ++ G+Y++L+
Sbjct: 373 GRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILS 432

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++ A A  W++V  V++L+  RG+ K+PG S +EV   ++ F S D  H    +LH  L 
Sbjct: 433 NLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALD 492

Query: 561 NLSAEMKEKGYVPQTKVVLY-DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
            L  E+K  GYVP T +V + D++ EEKE  +  HSEKLA+ FGL+NT  G TIR+ KNL
Sbjct: 493 ELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNL 552

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCHS  K IS   +++I++RDV RFHHF++G CSC DYW
Sbjct: 553 RVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/616 (37%), Positives = 378/616 (61%), Gaps = 16/616 (2%)

Query: 55  LIQSLCKQGNLRQALDV-LSIEPN---PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    + G  R A+D+ L +E +   P + TY  +L +CT    L+    +HS +   G
Sbjct: 22  MITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG 81

Query: 111 FDQDPFLVTKLINVYSHF---DSVDDARHVFDKTRRRTIYVWNALFRALTLAGR-GEEVL 166
              D  +   L+++Y+      SVDD+R VF++     +  W A+  A   +G   +E +
Sbjct: 82  LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAI 141

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL+ +M      IR + F+++ VLKAC   S  ++    G+++++  ++ G   +  +  
Sbjct: 142 ELFCKM--ISGHIRPNHFSFSSVLKACGNLSDPYT----GEQVYSYAVKLGIASVNCVGN 195

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +LI MYAR G +  A   F  +  KN+VS++A++  YA+N  + EA  LF E+      +
Sbjct: 196 SLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI--ADTGI 253

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
             ++ T  S+L   A++ A+ +G+ IHG +L+ G  S   + +AL++MY+RCG +E    
Sbjct: 254 GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQ 313

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF+ M+ R+V+SW S+I+ +  HG+  +A+++F +M+  G  P+ I++V+VL ACSH G+
Sbjct: 314 VFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGM 373

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           + EG+  F SM KEH I P +EHYACMVDLLGR+  L EA + I  + +     VW +LL
Sbjct: 374 ISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLL 433

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+CR+H N EL   A++ + E EP +   Y+LL++++A+A  W +V ++++ ++ R L K
Sbjct: 434 GACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 493

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S IEV+ +++ F   +  HPQ  Q++  L  L++++KE GY+P T  VL+D++ E+
Sbjct: 494 EAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQ 553

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE+ +  HSEK+AVAFGLI+TS+ + IRI KNLR+C DCH+  K+IS    +EI+VRD N
Sbjct: 554 KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSN 613

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHH +NGVCSC DYW
Sbjct: 614 RFHHIKNGVCSCNDYW 629



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 156/284 (54%), Gaps = 12/284 (4%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  VFDK   R +  W  +       G   + ++L+  M    +G   DRFTY+ VL AC
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME--LSGYVPDRFTYSSVLSAC 61

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF---GCVMYAGFVFSQMAV 250
                   LL  GK++H+ V+R G    V +  +L+DMYA+    G V  +  VF QM  
Sbjct: 62  TE----LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 117

Query: 251 KNVVSWSAMIACYARNGMA-FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            NV+SW+A+I  YA++G    EA+ELF +MI  S  + PN  +  SVL+AC  L+    G
Sbjct: 118 HNVMSWTAIITAYAQSGECDKEAIELFCKMI--SGHIRPNHFSFSSVLKACGNLSDPYTG 175

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           + ++ Y ++ G+ S+  V ++L++MYAR G++E  +  FD + ++++VS+N+++  Y  +
Sbjct: 176 EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKN 235

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
               +A  +F E+   G+  S  +F S+L   +  G + +G+ +
Sbjct: 236 LKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 279



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 120/218 (55%), Gaps = 15/218 (6%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF +M  +N+V+W+ MI  +A+ G A +A++LF +M +  +   P+  T  SVL AC  L
Sbjct: 7   VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGY--VPDRFTYSSVLSACTEL 64

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARC---GKLELGQCVFDHMDKRDVVSWN 360
             L  GK +H  ++R GL   + V  +LV MYA+C   G ++  + VF+ M + +V+SW 
Sbjct: 65  GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 124

Query: 361 SLISSYGVHGYGGK-AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           ++I++Y   G   K AI++F +MI   + P+  SF SVL AC +      G+ ++     
Sbjct: 125 AIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY----- 179

Query: 420 EHMIRPSVEHYAC----MVDLLGRANKLEEAAKIIEDL 453
            + ++  +    C    ++ +  R+ ++E+A K  + L
Sbjct: 180 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL 217


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/614 (36%), Positives = 371/614 (60%), Gaps = 15/614 (2%)

Query: 55  LIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           LI  L K     +A+DV       + +PN    T   +L +  +   +  A +VH     
Sbjct: 93  LISGLAKNDCFVEAIDVFREMIMGNFKPNAV--TISSVLPAFANLGLIRIAKSVHCFWVR 150

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF+ + F+ T L+++YS F  +  AR +F+    R +  WNA+    +  G  EE ++L
Sbjct: 151 GGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDL 210

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M   G  +  D +T   ++ A ++  C    L+ G  IH  ++R GY    HI T L
Sbjct: 211 FNLMRRKG--LLVDFYTIMSLIPASLSVGC----LQVGTGIHGFIIRTGYENDKHIKTAL 264

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +D+Y    CV  A  VFS+M+VK+V +W+ M+  ++       A++ F +M +   +L  
Sbjct: 265 MDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKM-LGIQNLKL 323

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +S+ ++ +L +C+   AL+QG+ +H   ++    + + V SA++ MYA CG LE  +  F
Sbjct: 324 DSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFF 383

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             M ++DVV WN++I+  G++GYG  AI +F +M   G+ P   +FVSVL ACSHAG+V 
Sbjct: 384 YGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVY 443

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG  +F  M K   + P+++HYAC++D+LGRA +L+ A   I ++  +P   V+ +LLG+
Sbjct: 444 EGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGA 503

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH N++L    S+++FE+EP +AG YVLL+++YA A  W+ VK  +  L ++ ++K P
Sbjct: 504 CRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDP 563

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S IE+ +++Y+F++ ++ HPQ+ ++  +L  L  ++K+ GYVP T V+L D+  + K+
Sbjct: 564 GFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKK 623

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
            I+  HSEK+A+AFGL+ T     IRITKNLR C+DCH+ +KF+SK   + ++++D NRF
Sbjct: 624 DILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRF 683

Query: 649 HHFRNGVCSCGDYW 662
           H F++GVCSC DYW
Sbjct: 684 HVFQDGVCSCRDYW 697



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 190/381 (49%), Gaps = 13/381 (3%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDA---LNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           +  NPTQ    L     +    L D      +H+ +  +G   + FL   L+N Y +   
Sbjct: 12  LSSNPTQRLSPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGL 71

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           + DA+ +F  T  + +  W  L   L       E ++++R M       + +  T + VL
Sbjct: 72  LADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREM--IMGNFKPNAVTISSVL 129

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
            A         L++  K +H   +R G+ G V + T L+DMY++FGC+  A  +F  M+ 
Sbjct: 130 PAF----ANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSE 185

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           +NVV+W+A+++ Y+ +G + EA++LF   +M    L  +  T++S++ A  ++  L+ G 
Sbjct: 186 RNVVTWNAIVSGYSDHGFSEEAIDLFN--LMRRKGLLVDFYTIMSLIPASLSVGCLQVGT 243

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            IHG+I+R G ++   + +AL+ +Y     ++    VF  M  +DV +W  +++ +    
Sbjct: 244 GIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGR 303

Query: 371 YGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           +  +AI+ F +M+    +    I+ + +L +CSH+G +++G+ +  ++  +     ++  
Sbjct: 304 HWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRV-HALAIKTCFANNIFV 362

Query: 430 YACMVDLLGRANKLEEAAKII 450
            + ++D+      LE+A +  
Sbjct: 363 GSAVIDMYANCGNLEDAKRFF 383



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 140/258 (54%), Gaps = 11/258 (4%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           LK  ++IHA ++  G      +  +L++ Y   G +  A  +F     KNVVSW+ +I+ 
Sbjct: 37  LKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISG 96

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
            A+N    EA+++FREMIM   +  PN+VT+ SVL A A L  +   K +H + +R G +
Sbjct: 97  LAKNDCFVEAIDVFREMIMG--NFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFE 154

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             + V +ALV MY++ G + + + +F+ M +R+VV+WN+++S Y  HG+  +AI +F  M
Sbjct: 155 GNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLM 214

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH----YACMVDLLG 438
              G+     + +S++ A    G ++ G  +        +IR   E+       ++D+  
Sbjct: 215 RRKGLLVDFYTIMSLIPASLSVGCLQVGTGI-----HGFIIRTGYENDKHIKTALMDIYV 269

Query: 439 RANKLEEAAKIIEDLRIE 456
             N +++A ++  ++ ++
Sbjct: 270 SHNCVDDAHRVFSEMSVK 287


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/617 (38%), Positives = 365/617 (59%), Gaps = 18/617 (2%)

Query: 53  NELIQSLCKQGNLRQALDV-LSIEP---NPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI          + LD+ LSI     N    T+ L+L +CT  ++    +++HS +  
Sbjct: 80  NTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVK 139

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF+ D   +T L+++YS    ++DA  VF++   R++  W ALF   T AG+  E ++L
Sbjct: 140 CGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDL 199

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASS---CGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           +++M     G+R D +    VL ACV       G  ++KH +E+         N  V   
Sbjct: 200 FKKM--VEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQ-----KNSFVR-- 250

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           TTL+++YA+ G +  A  VF  M  K++V+WS MI  YA N    E +E F +M+ E  +
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQE--N 308

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           L P+  ++V  L +CA+L AL+ G+     I R    + L + +AL+ MYA+CG +  G 
Sbjct: 309 LKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGF 368

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VF  M ++D+V  N+ IS    +G+   +  +F +    G+SP   +F+ +L  C HAG
Sbjct: 369 EVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAG 428

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           L+++G   F ++   + ++ +VEHY CMVDL GRA  L++A ++I D+ + P   VWG+L
Sbjct: 429 LIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGAL 488

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           L  CR+  + +LAE   K L  LEP NAGNYV L+++Y+ +  WDE   V+ ++  +G++
Sbjct: 489 LSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMK 548

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K+PG S IE++  ++ F++ D+ HP  ++++A L +L  EM+  G+VP T+ V +D++ E
Sbjct: 549 KIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDE 608

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           EKER++  HSEKLAVAFGLI+T  G+ IR+ KNLR+C DCH   K ISK   +EI+VRD 
Sbjct: 609 EKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDN 668

Query: 646 NRFHHFRNGVCSCGDYW 662
           NRFH F NG CSC DYW
Sbjct: 669 NRFHCFTNGSCSCNDYW 685



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 178/353 (50%), Gaps = 9/353 (2%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH  L  +    D FLV  L+     F     +  +F  T+   I+++N L         
Sbjct: 32  VHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNIFLYNTLINGFVNNHL 91

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
             E L+L+  +   G  +    FT+  VLKAC  +S      K G ++H+ V++ G+N  
Sbjct: 92  FHETLDLFLSIRKHGLNLHG--FTFPLVLKACTRASNR----KLGIDLHSLVVKCGFNHD 145

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V  MT+L+ +Y+  G +  A  VF ++  ++VV+W+A+ + Y   G   EA++LF++M+ 
Sbjct: 146 VAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMV- 204

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
               + P+S  +V VL AC  +  L+ G+ I  ++    +     V + LV +YA+CGK+
Sbjct: 205 -EMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKM 263

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           E  + VFD M ++D+V+W+++I  Y  + +  + I+ F +M+   + P   S V  L +C
Sbjct: 264 EKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSC 323

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           +  G ++ G+    S+   H    ++     ++D+  +   +    ++ ++++
Sbjct: 324 ASLGALDLGEWGI-SLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK 375



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 132/266 (49%), Gaps = 4/266 (1%)

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           S   H K++H S++ H  +    ++  L+     F    Y+  +FS     N+  ++ +I
Sbjct: 24  STFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNIFLYNTLI 83

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             +  N +  E L+LF  + +  H L  +  T   VL+AC   +  + G  +H  +++ G
Sbjct: 84  NGFVNNHLFHETLDLF--LSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCG 141

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
            +  +  +++L+++Y+  G+L     VF+ + +R VV+W +L S Y   G   +AI +FK
Sbjct: 142 FNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFK 201

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           +M+  GV P     V VL AC H G ++ G+ + + M +  M + S      +V+L  + 
Sbjct: 202 KMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVR-TTLVNLYAKC 260

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLL 466
            K+E+A  + + +  E     W +++
Sbjct: 261 GKMEKARSVFDSMG-EKDIVTWSTMI 285


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 242/630 (38%), Positives = 367/630 (58%), Gaps = 51/630 (8%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLI--NVYSHFDS 130
           + +P  T    E  L +C  HN L     + S +   GF  D F  ++L+  +  S F  
Sbjct: 22  TFKPTITLSILETHLHNC--HN-LKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIG 78

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           +D +  +FD+      ++WN + RA   +   E+ L LY+ M     G   D +TY  V+
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVG--PDNYTYPLVV 136

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA----------------- 233
           +AC      F     GKEIH  VL+ G++  V++  TLI+MYA                 
Sbjct: 137 QACAVRLLEFG----GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPV 192

Query: 234 -----------------RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
                              G VM A  +F++M  K++VSWSA+I+ Y +NGM  EAL +F
Sbjct: 193 LDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMF 252

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
            EM   ++ +  + V +VSVL ACA L+ ++ GKMIHG ++R G++S + + +AL+ MY+
Sbjct: 253 IEM--NANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYS 310

Query: 337 ----RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI 392
               +CG +E    VF+ M+++ V SWN+LI    V+G   +++ +F EM  +GV P+ I
Sbjct: 311 DMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEI 370

Query: 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           +F+ VLGAC H GLV+EG+  F SM ++H I P+V+HY CMVDLLGRA  L EA K+IE 
Sbjct: 371 TFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIES 430

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
           + + P    WG+LLG+C+ H + E+ ER  ++L EL+P + G +VLL++++A+   W++V
Sbjct: 431 MPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDV 490

Query: 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV 572
             V+ +++ +G+ K PG S IE    ++ F++ D+ HP   ++  +L  ++  +K +GY 
Sbjct: 491 LEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYA 550

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
           P T  V  D+D EEKE  +  HSEKLA+AFGL+  S    IRI KNLR+C DCH+  K I
Sbjct: 551 PDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLI 610

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           SK   +EI+VRD +RFH+F+ G CSC DYW
Sbjct: 611 SKAYAREIVVRDRHRFHYFKEGACSCMDYW 640


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/616 (37%), Positives = 378/616 (61%), Gaps = 16/616 (2%)

Query: 55  LIQSLCKQGNLRQALDV-LSIEPN---PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    + G  R A+D+ L +E +   P + TY  +L +CT    L+    +HS +   G
Sbjct: 27  MITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG 86

Query: 111 FDQDPFLVTKLINVYSHF---DSVDDARHVFDKTRRRTIYVWNALFRALTLAGR-GEEVL 166
              D  +   L+++Y+      SVDD+R VF++     +  W A+  A   +G   +E +
Sbjct: 87  LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAI 146

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL+ +M      IR + F+++ VLKAC   S  ++    G+++++  ++ G   +  +  
Sbjct: 147 ELFCKM--ISGHIRPNHFSFSSVLKACGNLSDPYT----GEQVYSYAVKLGIASVNCVGN 200

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +LI MYAR G +  A   F  +  KN+VS++A++  YA+N  + EA  LF E+      +
Sbjct: 201 SLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI--ADTGI 258

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
             ++ T  S+L   A++ A+ +G+ IHG +L+ G  S   + +AL++MY+RCG +E    
Sbjct: 259 GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQ 318

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF+ M+ R+V+SW S+I+ +  HG+  +A+++F +M+  G  P+ I++V+VL ACSH G+
Sbjct: 319 VFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGM 378

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           + EG+  F SM KEH I P +EHYACMVDLLGR+  L EA + I  + +     VW +LL
Sbjct: 379 ISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLL 438

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+CR+H N EL   A++ + E EP +   Y+LL++++A+A  W +V ++++ ++ R L K
Sbjct: 439 GACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 498

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S IEV+ +++ F   +  HPQ  Q++  L  L++++KE GY+P T  VL+D++ E+
Sbjct: 499 EAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQ 558

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE+ +  HSEK+AVAFGLI+TS+ + IRI KNLR+C DCH+  K+IS    +EI+VRD N
Sbjct: 559 KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSN 618

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHH +NGVCSC DYW
Sbjct: 619 RFHHIKNGVCSCNDYW 634



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 156/284 (54%), Gaps = 12/284 (4%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  VFDK   R +  W  +       G   + ++L+  M    +G   DRFTY+ VL AC
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME--LSGYVPDRFTYSSVLSAC 66

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF---GCVMYAGFVFSQMAV 250
                   LL  GK++H+ V+R G    V +  +L+DMYA+    G V  +  VF QM  
Sbjct: 67  TE----LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 122

Query: 251 KNVVSWSAMIACYARNGMA-FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            NV+SW+A+I  YA++G    EA+ELF +MI  S  + PN  +  SVL+AC  L+    G
Sbjct: 123 HNVMSWTAIITAYAQSGECDKEAIELFCKMI--SGHIRPNHFSFSSVLKACGNLSDPYTG 180

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           + ++ Y ++ G+ S+  V ++L++MYAR G++E  +  FD + ++++VS+N+++  Y  +
Sbjct: 181 EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKN 240

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
               +A  +F E+   G+  S  +F S+L   +  G + +G+ +
Sbjct: 241 LKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 284



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 120/218 (55%), Gaps = 15/218 (6%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF +M  +N+V+W+ MI  +A+ G A +A++LF +M +  +   P+  T  SVL AC  L
Sbjct: 12  VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGY--VPDRFTYSSVLSACTEL 69

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARC---GKLELGQCVFDHMDKRDVVSWN 360
             L  GK +H  ++R GL   + V  +LV MYA+C   G ++  + VF+ M + +V+SW 
Sbjct: 70  GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 129

Query: 361 SLISSYGVHGYGGK-AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           ++I++Y   G   K AI++F +MI   + P+  SF SVL AC +      G+ ++     
Sbjct: 130 AIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY----- 184

Query: 420 EHMIRPSVEHYAC----MVDLLGRANKLEEAAKIIEDL 453
            + ++  +    C    ++ +  R+ ++E+A K  + L
Sbjct: 185 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL 222


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/591 (38%), Positives = 354/591 (59%), Gaps = 24/591 (4%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           TQ TY  ++  C +   L+ A  +HS +  +GF     ++T L + YS    + DA ++F
Sbjct: 301 TQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIF 360

Query: 139 DKTR-RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR-----FTYTYVLKA 192
             T   R +  W A+       G     + L+ RM       R DR     FTY+ +LKA
Sbjct: 361 SMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM-------REDRVMPNEFTYSAMLKA 413

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
                   S+L    +IHA V++  Y  I  + T L+  Y++FG    A  +F  +  K+
Sbjct: 414 ------SLSILP--PQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKD 465

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA-LEQGKM 311
           VV+WSAM++C+A+ G    A  LF +M ++   + PN  T+ SV+ ACA  +A ++QG+ 
Sbjct: 466 VVAWSAMLSCHAQAGDCEGATYLFNKMAIQG--IKPNEFTISSVIDACACPSAGVDQGRQ 523

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
            H   ++      + V SALV+MY+R G ++  Q VF+    RD+VSWNS+IS Y  HGY
Sbjct: 524 FHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGY 583

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             KAI+ F++M   G+    ++F++V+  C+H GLV EG+  F+SM ++H I P++EHYA
Sbjct: 584 SMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYA 643

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           CMVDL  RA KL+E   +I D+    G  VW +LLG+CR+H NVEL + ++ +L  LEP 
Sbjct: 644 CMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPH 703

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
           ++  YVLL+++YAAA  W E   V++L++ R ++K  G S I++K K++SF++ D+ HP 
Sbjct: 704 DSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPM 763

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
            +Q++  L  +   +K+ GY P T  VL+D+  ++KE +++ HSE+LA+AFGLI T  G 
Sbjct: 764 SDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGT 823

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            ++I KNLR+C DCH   K +S   ++EI++RD +RFHHF  G CSCGD+W
Sbjct: 824 PLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 195/397 (49%), Gaps = 22/397 (5%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           I PNP   T+  +L +     +L     VH+     G     F+   L+N+Y+    V+D
Sbjct: 197 IWPNP--FTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVED 254

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT-GTGIRSDRFTYTYVLKA 192
           A+ VF+    R +  WN L   L L     E L+L+     T G   +S   TY  V+K 
Sbjct: 255 AKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQS---TYATVIKL 311

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ-MAVK 251
           C         L   +++H+ VL+HG++   ++MT L D Y++ G +  A  +FS     +
Sbjct: 312 CA----NLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSR 367

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           NVVSW+A+I+   +NG    A+ LF    M    + PN  T  ++L+A  ++   +    
Sbjct: 368 NVVSWTAIISGCIQNGDIPLAVVLFSR--MREDRVMPNEFTYSAMLKASLSILPPQ---- 421

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           IH  +++     I  V +AL+  Y++ G  E    +F  ++++DVV+W++++S +   G 
Sbjct: 422 IHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGD 481

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACS--HAGLVEEGKMLFESMRKEHMIRPSVEH 429
              A  +F +M   G+ P+  +  SV+ AC+   AG V++G+  F ++  ++    ++  
Sbjct: 482 CEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAG-VDQGRQ-FHAISIKYRYHDAICV 539

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
            + +V +  R   + ++A+I+ + + +     W S++
Sbjct: 540 SSALVSMYSRKGNI-DSAQIVFERQTDRDLVSWNSMI 575



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 140/283 (49%), Gaps = 9/283 (3%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           T L+++Y    SV +   VF+   ++ +  W +L      A    EV+ L+ RM     G
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR--AEG 196

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           I  + FT+  VL A VAS     L   G+ +HA  ++ G    V +  +L++MYA+ G V
Sbjct: 197 IWPNPFTFASVLSA-VASQGALDL---GQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLV 252

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
             A  VF+ M  +++VSW+ ++A    N    EAL+LF E       +  +  T  +V++
Sbjct: 253 EDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQS--TYATVIK 310

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD-HMDKRDVV 357
            CA L  L   + +H  +L+ G      V++AL   Y++CG+L     +F      R+VV
Sbjct: 311 LCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVV 370

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           SW ++IS    +G    A+ +F  M    V P+  ++ ++L A
Sbjct: 371 SWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 182/390 (46%), Gaps = 20/390 (5%)

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDD---------ARHVFDKTRRRTIYVWNALFRALTLA 159
           N  +  P  V KL+   +    V+D         AR+  D+  RR   V     R L   
Sbjct: 17  NAVNLAPEQVPKLLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAV--GANRVLFDY 74

Query: 160 GRGEEVLELYRRMN-GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            R   VLE+  + +     G+  D  T + VLKAC   S    +L  G+++H   ++ G+
Sbjct: 75  ARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKAC--RSVPDRVL--GEQLHCLCVKCGH 130

Query: 219 N-GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
           + G V   T+L+DMY + G V     VF  M  KNVV+W++++   A   M  E + LF 
Sbjct: 131 DRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFF 190

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
            M  E   + PN  T  SVL A A+  AL+ G+ +H   ++ G  S + V ++L+ MYA+
Sbjct: 191 RMRAEG--IWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAK 248

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           CG +E  + VF+ M+ RD+VSWN+L++   ++    +A+Q+F E        +  ++ +V
Sbjct: 249 CGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATV 308

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           +  C++   +   + L   + K H    +      + D   +  +L +A  I        
Sbjct: 309 IKLCANLKQLALARQLHSCVLK-HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSR 367

Query: 458 GPKVWGSLLGSCRIHCNVELAERASKRLFE 487
               W +++  C  + ++ LA     R+ E
Sbjct: 368 NVVSWTAIISGCIQNGDIPLAVVLFSRMRE 397


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/694 (36%), Positives = 381/694 (54%), Gaps = 75/694 (10%)

Query: 38  LNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHH 93
           L S   PT  S    + LI +L K     Q++ V S   +    P  H    L   C   
Sbjct: 73  LQSIPDPTVYSF---SSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAEL 129

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
           ++      +H     +G D D F+   L ++Y     + DAR VFD+   + +   +AL 
Sbjct: 130 SAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALL 189

Query: 154 RALTLAGRGEEVLELYRRMNGTG--------TGIRSD--------------------RFT 185
                 G  EEV+ +   M  +G         GI S                      F 
Sbjct: 190 CGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFC 249

Query: 186 YTYVLKACVASSCGFSL-LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV------ 238
              V  + V  S G S  L  G++IH  V++ G      +++ ++DMY + G V      
Sbjct: 250 PDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKL 309

Query: 239 ------------------------------MYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
                                         M+  F   +M + NVVSW+++IA  A+NG 
Sbjct: 310 FDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMEL-NVVSWTSIIAGCAQNGK 368

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
             EALELFREM  +   + PN VT+ S+L AC  +AAL  G+  HG+ +R  L   + V 
Sbjct: 369 DIEALELFREM--QVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVG 426

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           SAL+ MYA+CG++++ Q VF+ M  +++V WNSL++ Y +HG   + + IF+ ++   + 
Sbjct: 427 SALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLK 486

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
           P  ISF S+L AC   GL +EG   F  M +E+ I+P +EHY+CMV+LLGRA KL+EA  
Sbjct: 487 PDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYD 546

Query: 449 IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
           +I+++  EP   VWG+LL SCR+  NV+LAE A+++LF LEP N G YVL++++YAA  M
Sbjct: 547 LIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGM 606

Query: 509 WDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKE 568
           W EV  ++  +E+ GL+K PG S I+VK K+Y+ ++ D+ HPQ +Q+   +  +S EM++
Sbjct: 607 WTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRK 666

Query: 569 KGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSF 628
            G+ P     L D++ +E+E+++ GHSEKLAV FGL+NT  G  +++ KNLR+C DCH+ 
Sbjct: 667 SGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAV 726

Query: 629 TKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KFIS +A +EI +RD NRFHHF++G+CSCGD+W
Sbjct: 727 IKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 189/438 (43%), Gaps = 76/438 (17%)

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
           H+ +  +G   D ++  KLI  YS+++  +DA  +       T+Y +++L  ALT A   
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLF 97

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
            + + ++ RM     G+  D      + K C       S  K GK+IH      G +   
Sbjct: 98  SQSIGVFSRM--FSHGLIPDTHVLPNLFKVCAE----LSAFKAGKQIHCVACVSGLDMDA 151

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE---- 278
            +  +L  MY R G +  A  VF +M+ K+VV+ SA++  YAR G   E + +  E    
Sbjct: 152 FVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKS 211

Query: 279 ---------------------------MIMESHDL--CPNSVTMVSVLQACAALAALEQG 309
                                      M  + H L  CP+ VT+ SVL +      L  G
Sbjct: 212 GIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMG 271

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGK-------------LELGQC---------- 346
           + IHGY++++GL     V+SA++ MY + G              +E G C          
Sbjct: 272 RQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRN 331

Query: 347 --------VFDHMDKR----DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
                   +F    ++    +VVSW S+I+    +G   +A+++F+EM   GV P+ ++ 
Sbjct: 332 GLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTI 391

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
            S+L AC +   +  G+       + H++   V   + ++D+  +  ++ + ++I+ ++ 
Sbjct: 392 PSMLPACGNIAALGHGRSTHGFAVRVHLL-DDVHVGSALIDMYAKCGRI-KMSQIVFNMM 449

Query: 455 IEPGPKVWGSLLGSCRIH 472
                  W SL+    +H
Sbjct: 450 PTKNLVCWNSLMNGYSMH 467



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 2/210 (0%)

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
           + HA +L+ G     +I   LI  Y+ + C   A  +   +    V S+S++I    +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
           +  +++ +F  M   SH L P++  + ++ + CA L+A + GK IH      GLD    V
Sbjct: 96  LFSQSIGVFSRMF--SHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFV 153

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
             +L  MY RCG++   + VFD M ++DVV+ ++L+  Y   G   + ++I  EM   G+
Sbjct: 154 QGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGI 213

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESM 417
            P+ +S+  +L   + +G  +E  ++F+ M
Sbjct: 214 EPNIVSWNGILSGFNRSGYHKEAVIMFQKM 243


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/612 (36%), Positives = 366/612 (59%), Gaps = 12/612 (1%)

Query: 55  LIQSLCKQGNLRQALDVLSI----EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           LI  L +QG   +++ +  +    +  P Q+T   LL + T+  +L    ++H+ +   G
Sbjct: 386 LITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG 445

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           F+ D  +   L+ +Y     V D   +++    R +  WNA    L   G  +  L ++ 
Sbjct: 446 FETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFY 505

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M     G   + +T+  +L +C   SC F +  +G+++HA ++++  +    + T LID
Sbjct: 506 HM--LEEGFIPNMYTFISILGSC---SCLFDV-HYGRQVHAHIIKNQLDDNNFVCTALID 559

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MYA+   +  A   F++++V+++ +W+ +I  YA+     +AL  FR+M  E   + PN 
Sbjct: 560 MYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEG--VKPNE 617

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T+   L  C++LA+LE G+ +H  + + G  S + V SALV MYA+CG +E  + +F+ 
Sbjct: 618 FTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEA 677

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           + +RD ++WN++I  Y  +G G KA+  F+ M+  G+SP  ++F  +L ACSH GLVEEG
Sbjct: 678 LIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEG 737

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           K  F SM ++  I P+V+H ACMVD+LGR  K +E    I+ +++     +W ++LG+ +
Sbjct: 738 KEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASK 797

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
           +H N+ L E+A+ +LFEL+P    +Y+LL++++A    WD+VKRV+ L+ ++G++K PG 
Sbjct: 798 MHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGC 857

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S +E   ++++FVS D  HPQ +++H  L  L  E+    YVP+T+ VL+++   EK+  
Sbjct: 858 SWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKEN 917

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +  HSE+LA+ F LI+TS  + IRI KNLR+C DCH   K IS   N+EI+VRDV RFHH
Sbjct: 918 LRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHH 977

Query: 651 FRNGVCSCGDYW 662
           F+NG CSC D+W
Sbjct: 978 FKNGACSCNDFW 989



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 196/400 (49%), Gaps = 21/400 (5%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           LIQ L  +G    ++ +     N    P + T    L +C+   +L     +H+     G
Sbjct: 184 LIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLG 243

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              D F+ + L+++Y+    ++ A  +F     +    WN L       G    VL+L+ 
Sbjct: 244 LLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFC 303

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M      ++ + FT T VLK C  S      LK G+ IH+ +++ GY G   I   L+D
Sbjct: 304 SM--MELDVKCNEFTLTTVLKGCANSKN----LKQGQVIHSLIIKCGYEGNEFIGCGLVD 357

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MY++ G  + A  VF  +   ++V WSA+I C  + G + E+++LF   +M   D  PN 
Sbjct: 358 MYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFH--LMRLGDTLPNQ 415

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T+ S+L A      L+ G+ IH  + + G ++ + V +ALVTMY + G +  G  +++ 
Sbjct: 416 YTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYES 475

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M  RD++SWN+ +S     G   + + IF  M+  G  P+  +F+S+LG+CS    V  G
Sbjct: 476 MVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG 535

Query: 411 KMLFESMRKEHMIRPSVE--HYAC--MVDLLGRANKLEEA 446
           + +       H+I+  ++  ++ C  ++D+  +   LE+A
Sbjct: 536 RQV-----HAHIIKNQLDDNNFVCTALIDMYAKCMYLEDA 570



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 160/329 (48%), Gaps = 8/329 (2%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  +L  C    SL  A  +H  +  +  + D  L   L+NVY+       AR V  K  
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
            R +  W AL + L   G   + + L++ M     GI  + FT    LKAC  S C    
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQ--NEGIMPNEFTLATGLKAC--SLC--MA 228

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L  GK++HA   + G    + + + L+D+YA+ G +  A  +F  M  +N V+W+ ++  
Sbjct: 229 LDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNG 288

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           YA+ G     L+LF  M+    D+  N  T+ +VL+ CA    L+QG++IH  I++ G +
Sbjct: 289 YAQRGDVTGVLKLFCSMM--ELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYE 346

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
               +   LV MY++CG       VF  + K D+V W++LI+     G   ++I++F  M
Sbjct: 347 GNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLM 406

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGK 411
                 P+  +  S+L A ++ G ++ G+
Sbjct: 407 RLGDTLPNQYTICSLLSAATNTGNLQYGQ 435



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 150/282 (53%), Gaps = 10/282 (3%)

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
           Y+ +L+ C +       L   K IH  +++   N   H+  +L+++YA+     YA  V 
Sbjct: 115 YSSMLRECASKRS----LGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVL 170

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
           ++M  ++VVSW+A+I      G A +++ LF+EM  ++  + PN  T+ + L+AC+   A
Sbjct: 171 AKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEM--QNEGIMPNEFTLATGLKACSLCMA 228

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           L+ GK +H    + GL   L V SALV +YA+CG++EL   +F  M +++ V+WN L++ 
Sbjct: 229 LDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNG 288

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           Y   G     +++F  M+   V  +  +  +VL  C+++  +++G+++   + K      
Sbjct: 289 YAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIK--CGYE 346

Query: 426 SVEHYAC-MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
             E   C +VD+  +     +A  + + ++ +P   VW +L+
Sbjct: 347 GNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI 387


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/616 (37%), Positives = 378/616 (61%), Gaps = 16/616 (2%)

Query: 55  LIQSLCKQGNLRQALDV-LSIEPN---PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    + G  R A+D+ L +E +   P + TY  +L +CT    L+    +HS +   G
Sbjct: 220 MITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG 279

Query: 111 FDQDPFLVTKLINVYSHF---DSVDDARHVFDKTRRRTIYVWNALFRALTLAGR-GEEVL 166
              D  +   L+++Y+      SVDD+R VF++     +  W A+  A   +G   +E +
Sbjct: 280 LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAI 339

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL+ +M      IR + F+++ VLKAC   S  ++    G+++++  ++ G   +  +  
Sbjct: 340 ELFCKM--ISGHIRPNHFSFSSVLKACGNLSDPYT----GEQVYSYAVKLGIASVNCVGN 393

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +LI MYAR G +  A   F  +  KN+VS++A++  YA+N  + EA  LF E+      +
Sbjct: 394 SLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI--ADTGI 451

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
             ++ T  S+L   A++ A+ +G+ IHG +L+ G  S   + +AL++MY+RCG +E    
Sbjct: 452 GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQ 511

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF+ M+ R+V+SW S+I+ +  HG+  +A+++F +M+  G  P+ I++V+VL ACSH G+
Sbjct: 512 VFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGM 571

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           + EG+  F SM KEH I P +EHYACMVDLLGR+  L EA + I  + +     VW +LL
Sbjct: 572 ISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLL 631

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+CR+H N EL   A++ + E EP +   Y+LL++++A+A  W +V ++++ ++ R L K
Sbjct: 632 GACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 691

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S IEV+ +++ F   +  HPQ  Q++  L  L++++KE GY+P T  VL+D++ E+
Sbjct: 692 EAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQ 751

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE+ +  HSEK+AVAFGLI+TS+ + IRI KNLR+C DCH+  K+IS    +EI+VRD N
Sbjct: 752 KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSN 811

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHH +NGVCSC DYW
Sbjct: 812 RFHHIKNGVCSCNDYW 827



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 213/429 (49%), Gaps = 35/429 (8%)

Query: 46  SLSSRN------KNELIQSLCKQGNLRQALDVLSI----EPNPTQHTYELLLLSCTHHNS 95
           SLS +N      KN LI+ L   G L  A   L +       P   TY +LL SC    +
Sbjct: 1   SLSLKNPNFEPLKNRLIRQL-DVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRN 59

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT-RRRTIYVWNALFR 154
                 VH  L  +G + D  ++  LI++YS     + AR +F+    +R +  W+A+  
Sbjct: 60  FQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVS 119

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
               A    E   ++  ++    G   + + +  V++AC  S+  ++ +  G+ I+  V+
Sbjct: 120 C--FANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRAC--SNANYAWV--GEIIYGFVV 173

Query: 215 RHGY-NGIVHIMTTLIDMYARFGCVMYAGF-VFSQMAVKNVVSWSAMIACYARNGMAFEA 272
           + GY    V +   LIDM+ +    + + + VF +M  +N+V+W+ MI  +A+ G A +A
Sbjct: 174 KTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDA 233

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
           ++LF +M +  +   P+  T  SVL AC  L  L  GK +H  ++R GL   + V  +LV
Sbjct: 234 IDLFLDMELSGY--VPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLV 291

Query: 333 TMYARC---GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK-AIQIFKEMIYHGVS 388
            MYA+C   G ++  + VF+ M + +V+SW ++I++Y   G   K AI++F +MI   + 
Sbjct: 292 DMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIR 351

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC----MVDLLGRANKLE 444
           P+  SF SVL AC +      G+ ++      + ++  +    C    ++ +  R+ ++E
Sbjct: 352 PNHFSFSSVLKACGNLSDPYTGEQVY-----SYAVKLGIASVNCVGNSLISMYARSGRME 406

Query: 445 EAAKIIEDL 453
           +A K  + L
Sbjct: 407 DARKAFDIL 415


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/616 (37%), Positives = 350/616 (56%), Gaps = 39/616 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P ++TY  LL   T   ++     +H H+   GF  + F+   LI++YS    V  AR V
Sbjct: 117 PDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGV 176

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD++ +  +  WN +      + + +E ++L+  M      +     T   VL AC    
Sbjct: 177 FDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMR--VLPSSITLVSVLSACSK-- 232

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG--------------------C 237
                L  GK +H  V       +  +   LIDMYA  G                     
Sbjct: 233 --LKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWT 290

Query: 238 VMYAGFV-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            +  GF            F +M  ++ VSW+AMI  Y +     E L LFREM  ++ ++
Sbjct: 291 AIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREM--QAANI 348

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+  TMVS+L ACA L ALE G+ I  YI +  +     V +AL+ MY  CG +E    
Sbjct: 349 KPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIR 408

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +F+ M  RD +SW ++I    ++GYG +A+ +F +M+   ++P  ++ + VL AC+H+G+
Sbjct: 409 IFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGM 468

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V++GK  F  M  +H I P+V HY CMVDLLGRA  L+EA ++I+++ ++P   VWGSLL
Sbjct: 469 VDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLL 528

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+CR+H + E+AE A++++ ELEP N   YVLL ++YAA + W+++  V++L+  RG++K
Sbjct: 529 GACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKK 588

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S IE+   ++ FV+ D+ HPQ +++++ L  +S ++K  GY P T  V  D+  EE
Sbjct: 589 TPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEE 648

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE  V  HSEKLA+AFGLI++  G TIRI KNLR+C DCH   K +SK  N+E++VRD  
Sbjct: 649 KESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRT 708

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHFR+G CSC DYW
Sbjct: 709 RFHHFRHGSCSCKDYW 724



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 185/388 (47%), Gaps = 42/388 (10%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDARHVFDKTRRRTIYVWNAL 152
           S++    +HS     G   +P +  ++I          ++ AR VFD       +VWN +
Sbjct: 31  SMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNM 90

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
            +  +  G     + +Y  M     G+  D +TY ++LK     +     +K G+E+H  
Sbjct: 91  IKGYSRVGCPNSAVSMYCEM--LERGVMPDEYTYPFLLKRFTRDTA----VKCGRELHDH 144

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
           +++ G++  V +   LI +Y+  G V  A  VF + +  +VV+W+ MI+ Y R+    E+
Sbjct: 145 IVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDES 204

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
           ++LF EM  E   + P+S+T+VSVL AC+ L  L  GK +H Y+    ++ +  + +AL+
Sbjct: 205 MKLFDEM--ERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALI 262

Query: 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA----------------- 375
            MYA CG ++    +FD+M  RDV+SW ++++ +   G  G A                 
Sbjct: 263 DMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTA 322

Query: 376 --------------IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
                         + +F+EM    + P   + VS+L AC+H G +E G+ +   + K  
Sbjct: 323 MIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNE 382

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKI 449
           +   S    A ++D+      +E+A +I
Sbjct: 383 IKIDSFVGNA-LIDMYFNCGNVEKAIRI 409



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 5/250 (2%)

Query: 207 KEIHASVLRHGY--NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           K+IH+  +  G   N IV             G + YA  VF  M   N   W+ MI  Y+
Sbjct: 36  KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYS 95

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           R G    A+ ++ EM+     + P+  T   +L+      A++ G+ +H +I++ G  S 
Sbjct: 96  RVGCPNSAVSMYCEML--ERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSN 153

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + V +AL+ +Y+  G++ + + VFD   K DVV+WN +IS Y       +++++F EM  
Sbjct: 154 VFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMER 213

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
             V PS I+ VSVL ACS    +  GK +   + K+  I P       ++D+      ++
Sbjct: 214 MRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV-KDLKIEPVRVLENALIDMYAACGDMD 272

Query: 445 EAAKIIEDLR 454
            A  I ++++
Sbjct: 273 TALGIFDNMK 282


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/618 (36%), Positives = 362/618 (58%), Gaps = 41/618 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +++  LL SC    +L +   +H H+   G+D D ++ T LI++Y+    ++DA  V
Sbjct: 63  PNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKV 122

Query: 138 FDKTRRRTI--------------YV-----------------WNALFRALTLAGRGEEVL 166
           FD++  R +              Y+                 WNA+          +E L
Sbjct: 123 FDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEAL 182

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           ELY+ M    T ++ D  T   V+ AC  S      ++ G+++H+ +  HG+   + I+ 
Sbjct: 183 ELYKDM--MKTNVKPDESTMVTVVSACAQSGS----IELGRQLHSWIEDHGFGSNIKIVN 236

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LID+Y++ G V  A  +F  +A K+V+SW+ +I  +    +  EAL LF+EM+      
Sbjct: 237 VLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGES- 295

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELG 344
            PN VTM+SVL ACA L A++ G+ IH YI +R  G+ +   ++++L+ MYA+CG +E  
Sbjct: 296 -PNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAA 354

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           + VFD M  R + SWN++I  + +HG    A  +F +M  +G+ P  I+FV +L ACSH+
Sbjct: 355 KQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHS 414

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+++ G+ +F SM +++ I P +EHY CM+DLLG     +EA ++I  + +EP   +W S
Sbjct: 415 GMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCS 474

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +C++H NVEL E  ++ L ++EP N G+YVLL+++YA A  WD+V +++ LL  +G+
Sbjct: 475 LLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGI 534

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +K PG S IE+   ++ F+  D+FHP+  +++ +L  +   M+E G+VP T  VL +++ 
Sbjct: 535 KKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEE 594

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           E KE  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH  TK ISK   +EI+ RD
Sbjct: 595 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 654

Query: 645 VNRFHHFRNGVCSCGDYW 662
             R H  ++GV SC DYW
Sbjct: 655 RTRLHLLKDGVWSCHDYW 672



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 195/378 (51%), Gaps = 41/378 (10%)

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
           HFD +  A  +F+  +   + +WN +FR   L       L+LY  M     G+  + +++
Sbjct: 11  HFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCM--ISLGLLPNSYSF 68

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG---------- 236
            ++LK+C  S      L  G++IH  VL+ GY+  +++ T+LI MYA+ G          
Sbjct: 69  PFLLKSCAKSKA----LIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFD 124

Query: 237 ------CVMYAGFV---------------FSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
                  V Y   +               F +++VK+VVSW+AMI+ Y       EALEL
Sbjct: 125 RSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALEL 184

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           +++M+    ++ P+  TMV+V+ ACA   ++E G+ +H +I   G  S + +V+ L+ +Y
Sbjct: 185 YKDMM--KTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLY 242

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ++CG++E    +F  + K+DV+SWN+LI  +       +A+ +F+EM+  G SP+ ++ +
Sbjct: 243 SKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTML 302

Query: 396 SVLGACSHAGLVEEGKMLFESMRKE-HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           SVL AC+H G ++ G+ +   + K    +  +      ++D+  +   + EAAK + D  
Sbjct: 303 SVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDI-EAAKQVFDSM 361

Query: 455 IEPGPKVWGSLLGSCRIH 472
           +      W +++    +H
Sbjct: 362 LTRSLSSWNAMIFGFAMH 379



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 180/416 (43%), Gaps = 52/416 (12%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    +  N ++AL    D++     P + T   ++ +C    S+     +HS + D
Sbjct: 166 NAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIED 225

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GF  +  +V  LI++YS    V+ A  +F    ++ +  WN L    T     +E L L
Sbjct: 226 HGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLL 285

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH--GYNGIVHIMT 226
           ++ M  +G     +  T   VL AC         +  G+ IH  + +   G      ++T
Sbjct: 286 FQEMLRSGES--PNDVTMLSVLPACAH----LGAIDIGRWIHVYINKRLKGVTNASSLLT 339

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +LIDMYA+ G +  A  VF  M  +++ SW+AMI  +A +G A  A +LF +M     D 
Sbjct: 340 SLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID- 398

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+ +T V +L AC+    L+ G+    +I R           ++   Y    KLE   C
Sbjct: 399 -PDDITFVGLLSACSHSGMLDLGR----HIFR-----------SMSQDYKITPKLEHYGC 442

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           + D +               G  G   +A ++ + M    + P  + + S+L AC     
Sbjct: 443 MIDLL---------------GHCGLFKEAKEMIRTM---PMEPDGVIWCSLLKACKMHNN 484

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI---IEDLRIEPGP 459
           VE G+   +++ K     P    Y  + ++   A + ++ AKI   + D  I+  P
Sbjct: 485 VELGESYAQNLIKIEPENPG--SYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAP 538


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/569 (38%), Positives = 350/569 (61%), Gaps = 10/569 (1%)

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLI--NVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
           + D   + +H+      QD FL +KLI  +  +    V  A  +F  T    +++WN + 
Sbjct: 20  VGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTII 79

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           R  +++      + LYR M     GI  + +T+ +VLKAC    C    L  G+E+H+ +
Sbjct: 80  RGYSISDSPITAIALYRDM--FLCGISPNSYTFGFVLKAC----CKLLRLCEGQELHSQI 133

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           ++ G +    ++  LI +YA  GC+ YA  +F +M   +  SWS M++ YA+NG A EAL
Sbjct: 134 VKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEAL 193

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
           +LFREM  ++ ++  ++ T+ SV+  C  L AL+ GK +H Y+ + G+   + + +ALV 
Sbjct: 194 KLFREM--QAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVG 251

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MY++CG L+    VF  M +RDV +W+++I+ Y +HG+G KA+Q+F  M      P+ ++
Sbjct: 252 MYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVT 311

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           F SVL ACSH+GLVE+G  +FE+M  E+ I P ++HY CMVDL  RA  +  A K I+ +
Sbjct: 312 FTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTM 371

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
            IEP   +W +LLG+C+ H   +L E  S+++ +L+P++  NYVL+++VYA+   W  V 
Sbjct: 372 PIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVC 431

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
           +V+ L++ +  +K  G S IE+   ++ F+  DE HP+ E+++ +L  ++ ++K+ G+V 
Sbjct: 432 QVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVN 491

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
            T  VL+D+D EEKE  +  HSE+LA+A+GL++T  G  IRI KNLR+C DCH   K IS
Sbjct: 492 STVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLIS 551

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +  N+EI+VRD  RFHHFR   CSC DYW
Sbjct: 552 EVYNREIIVRDRVRFHHFRERGCSCNDYW 580


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/616 (37%), Positives = 378/616 (61%), Gaps = 16/616 (2%)

Query: 55  LIQSLCKQGNLRQALDV-LSIEPN---PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    + G  R A+D+ L +E +   P + TY  +L +CT    L+    +HS +   G
Sbjct: 202 MITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG 261

Query: 111 FDQDPFLVTKLINVYSHF---DSVDDARHVFDKTRRRTIYVWNALFRALTLAGR-GEEVL 166
              D  +   L+++Y+      SVDD+R VF++     +  W A+  A   +G   +E +
Sbjct: 262 LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAI 321

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL+ +M      IR + F+++ VLKAC   S  ++    G+++++  ++ G   +  +  
Sbjct: 322 ELFCKM--ISGHIRPNHFSFSSVLKACGNLSDPYT----GEQVYSYAVKLGIASVNCVGN 375

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +LI MYAR G +  A   F  +  KN+VS++A++  YA+N  + EA  LF E+      +
Sbjct: 376 SLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI--ADTGI 433

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
             ++ T  S+L   A++ A+ +G+ IHG +L+ G  S   + +AL++MY+RCG +E    
Sbjct: 434 GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQ 493

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF+ M+ R+V+SW S+I+ +  HG+  +A+++F +M+  G  P+ I++V+VL ACSH G+
Sbjct: 494 VFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGM 553

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           + EG+  F SM KEH I P +EHYACMVDLLGR+  L EA + I  + +     VW +LL
Sbjct: 554 ISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLL 613

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+CR+H N EL   A++ + E EP +   Y+LL++++A+A  W +V ++++ ++ R L K
Sbjct: 614 GACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 673

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S IEV+ +++ F   +  HPQ  Q++  L  L++++KE GY+P T  VL+D++ E+
Sbjct: 674 EAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQ 733

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE+ +  HSEK+AVAFGLI+TS+ + IRI KNLR+C DCH+  K+IS    +EI+VRD N
Sbjct: 734 KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSN 793

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHH +NGVCSC DYW
Sbjct: 794 RFHHIKNGVCSCNDYW 809



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 202/406 (49%), Gaps = 28/406 (6%)

Query: 63  GNLRQALDVLSI----EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV 118
           G L  A   L +       P   TY +LL SC    +      VH  L  +G + D  ++
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 119 TKLINVYSHFDSVDDARHVFDKT-RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177
             LI++YS     + AR +F+    +R +  W+A+      A    E   ++  ++    
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSC--FANNSMEWQAIWTFLDMLEL 122

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFG 236
           G   + + +  V++AC  S+  ++ +  G+ I+  V++ GY    V +   LIDM+ +  
Sbjct: 123 GFYPNEYCFAAVIRAC--SNANYAWV--GEIIYGFVVKTGYLEADVCVGCELIDMFVKGS 178

Query: 237 CVMYAGF-VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
             + + + VF +M  +N+V+W+ MI  +A+ G A +A++LF +M +  +   P+  T  S
Sbjct: 179 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGY--VPDRFTYSS 236

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC---GKLELGQCVFDHMD 352
           VL AC  L  L  GK +H  ++R GL   + V  +LV MYA+C   G ++  + VF+ M 
Sbjct: 237 VLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP 296

Query: 353 KRDVVSWNSLISSYGVHGYGGK-AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           + +V+SW ++I++Y   G   K AI++F +MI   + P+  SF SVL AC +      G+
Sbjct: 297 EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 356

Query: 412 MLFESMRKEHMIRPSVEHYAC----MVDLLGRANKLEEAAKIIEDL 453
            ++      + ++  +    C    ++ +  R+ ++E+A K  + L
Sbjct: 357 QVY-----SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL 397


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/581 (40%), Positives = 343/581 (59%), Gaps = 41/581 (7%)

Query: 114 DPFLVTKLINVYSHFDS--VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR 171
           DPF  +K++   +  DS  +  AR VF++    T +  N++ R  T      + +  Y+ 
Sbjct: 9   DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 68

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           M     G+  DRFT+  + K+C        +L  GK++H    + G+    +I  TL++M
Sbjct: 69  M--MLQGLDPDRFTFPSLFKSC-------GVLCEGKQLHCHSTKLGFASDAYIQNTLMNM 119

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN-- 289
           Y+  GC++ A  VF +M  K+VVSW+ MI  YA+  +  EA++LFR M + S+  C N  
Sbjct: 120 YSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIM 179

Query: 290 ----------------------------SVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
                                        VTM S+L AC  L ALE GK +H YI +  +
Sbjct: 180 INGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKI 239

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           +  + + +ALV MYA+CG +E    VF  M ++DV++W +LI    + G G KA+++F E
Sbjct: 240 EVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHE 299

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M    V P  I+FV VL ACSHAGLV EG   F SM  ++ I+PS+EHY CMVD+LGRA 
Sbjct: 300 MQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAG 359

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
           ++ EA  +I+++ + P   V   LL +CRIH N+ +AERA+++L EL+P N G YVLL++
Sbjct: 360 RIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSN 419

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +Y++   W+  K+++ L+  R ++K PG S IEV   ++ FV  D  HPQ  +++  L +
Sbjct: 420 IYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDD 479

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           +   +K  GYVP    VL+D+D +EKE  +  HSEKLA+AFGL++T+ G  IR+ KNLR+
Sbjct: 480 MMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRV 539

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCHS  KFIS+  N+EI+VRD NRFHHF  G CSC D+W
Sbjct: 540 CSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 164/369 (44%), Gaps = 48/369 (13%)

Query: 38  LNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL---DVLSIEP-NPTQHTYELLLLSCTHH 93
            N    PT+ +    N +I+    +   RQA+    ++ ++  +P + T+  L  SC   
Sbjct: 35  FNQIPNPTTFTC---NSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC--- 88

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
             L +   +H H T  GF  D ++   L+N+YS+   +  AR VFDK   +++  W  + 
Sbjct: 89  GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMI 148

Query: 154 RALTLAGRGEEVLELYRRM-------------NG-----------------TGTGIRSDR 183
            A        E ++L+RRM             NG                   +G++ D+
Sbjct: 149 GAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDK 208

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
            T   +L AC         L+ GK +H  + +      V + T L+DMYA+ G +  A  
Sbjct: 209 VTMASLLIACTH----LGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMR 264

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF +M  K+V++W+A+I   A  G   +ALELF EM M   ++ P+++T V VL AC+  
Sbjct: 265 VFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMS--EVKPDAITFVGVLAACSHA 322

Query: 304 AALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNS 361
             + +G      +  + G+   +     +V M  R G++   + +  +M    D      
Sbjct: 323 GLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVG 382

Query: 362 LISSYGVHG 370
           L+S+  +HG
Sbjct: 383 LLSACRIHG 391


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/618 (36%), Positives = 360/618 (58%), Gaps = 41/618 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY------------ 125
           P  +T+  LL SC       +   +H H+   G++ D ++ T LI++Y            
Sbjct: 101 PNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKV 160

Query: 126 ----SHFDSV---------------DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
               SH D V               + A+ +FD+   + +  WNA+       G  +E L
Sbjct: 161 FDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEAL 220

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +L++ M    T ++ D  T   V+ AC  S      ++ G+++H+ +  HG    + I+ 
Sbjct: 221 DLFKEM--MKTNVKPDESTMVTVVSACAQSGS----IQLGRQVHSWIDDHGLGSNLKIVN 274

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LID+Y++ G V  A  +F  ++ K+V+SW+ MI  Y    +  EAL LF+EM+    + 
Sbjct: 275 ALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGEN- 333

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELG 344
            PN VTM+S+L ACA L A++ G+ IH YI +R  G+ +   + ++L+ MYA+CG +E  
Sbjct: 334 -PNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAA 392

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
             VF+ M  R + + N++I  + +HG    A  IF  M  +G+ P  I+FV +L ACSH+
Sbjct: 393 HQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+++ G+ +F SM + + I P +EHY CM+DLLG     +EA ++I  + +EP   +W S
Sbjct: 453 GMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCS 512

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +C++H NVEL E  +++L ++EP N G+YVLL+++YA A  W+EV  ++ LL  +G+
Sbjct: 513 LLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGM 572

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +KVPG S IE+   ++ F+  D+FHP+  +++ +L  +   ++E G+VP T  VL +++ 
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 632

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           E K+  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH  TK ISK   +EI+ RD
Sbjct: 633 EFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 692

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHFR+GVCSC DYW
Sbjct: 693 RTRFHHFRDGVCSCNDYW 710



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 199/387 (51%), Gaps = 43/387 (11%)

Query: 102 VHSHLTDNGFDQDPFLVTKLIN---VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           +H+ +   G     + +++L+    +  +FD +  A  VF+  +   + +WN +FR   L
Sbjct: 21  IHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 80

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +      ++LY  M     G+  + +T+ ++LK+C        + K G++IH  VL+ GY
Sbjct: 81  SSDPVSAIKLYVCM--ISLGLLPNSYTFPFLLKSCAK----LKVSKEGQQIHGHVLKLGY 134

Query: 219 NGIVHIMTTLIDMYARFG----------------CVMYAGFV---------------FSQ 247
              +++ T+LI MY + G                 V Y   +               F +
Sbjct: 135 ELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDE 194

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           + VK+VVSW+A+I+ YA  G   EAL+LF+EM+    ++ P+  TMV+V+ ACA   +++
Sbjct: 195 IPVKDVVSWNAIISGYADTGNNKEALDLFKEMM--KTNVKPDESTMVTVVSACAQSGSIQ 252

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+ +H +I   GL S L +V+AL+ +Y++CG++E    +F  +  +DV+SWN++I  Y 
Sbjct: 253 LGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYT 312

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE-HMIRPS 426
                 +A+ +F+EM+  G +P+ ++ +S+L AC+  G ++ G+ +   + K    +  +
Sbjct: 313 HLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNA 372

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDL 453
                 ++D+  +   +E A ++   +
Sbjct: 373 SSLRTSLIDMYAKCGDIEAAHQVFNSM 399



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 146/293 (49%), Gaps = 38/293 (12%)

Query: 209 IHASVLRHGYNGIVHIMTTLID---MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           IHA +++ G +   + ++ L++   +   F  + YA  VF  +   N++ W+ M   +A 
Sbjct: 21  IHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 80

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           +     A++L+  MI  S  L PNS T   +L++CA L   ++G+ IHG++L+ G +  L
Sbjct: 81  SSDPVSAIKLYVCMI--SLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDL 138

Query: 326 PVVSALVTMYARCGK-------------------------------LELGQCVFDHMDKR 354
            V ++L++MY + G+                               +E  Q +FD +  +
Sbjct: 139 YVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVK 198

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           DVVSWN++IS Y   G   +A+ +FKEM+   V P   + V+V+ AC+ +G ++ G+ + 
Sbjct: 199 DVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQV- 257

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
            S   +H +  +++    ++DL  +  ++E A  + + L        W +++G
Sbjct: 258 HSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLS-NKDVISWNTMIG 309



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 166/403 (41%), Gaps = 49/403 (12%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I      GN ++ALD+    +     P + T   ++ +C    S+     VHS + D
Sbjct: 204 NAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDD 263

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +G   +  +V  LI++YS    V+ A  +F     + +  WN +    T     +E L L
Sbjct: 264 HGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLL 323

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH--GYNGIVHIMT 226
           ++ M    +G   +  T   +L AC         +  G+ IH  + +   G      + T
Sbjct: 324 FQEM--LRSGENPNDVTMLSILPACAQ----LGAIDFGRWIHVYIDKRIKGVTNASSLRT 377

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +LIDMYA+ G +  A  VF+ M  + + + +AMI  +A +G A  A ++F    M  + +
Sbjct: 378 SLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSR--MRKNGI 435

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+ +T V +L AC+    L+ G+ I                 ++   Y    KLE   C
Sbjct: 436 EPDDITFVGLLSACSHSGMLDLGRRI---------------FRSMTQNYKITPKLEHYGC 480

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           + D +               G  G   +A ++   M    + P  + + S+L AC   G 
Sbjct: 481 MIDLL---------------GHLGLFKEAEEMINTMT---MEPDGVIWCSLLKACKMHGN 522

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
           VE G+   + + K     P    Y  + ++   A +  E A I
Sbjct: 523 VELGESFAQKLIKIEPENPG--SYVLLSNIYATAGRWNEVANI 563


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/570 (40%), Positives = 338/570 (59%), Gaps = 9/570 (1%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
           S+ +   VH+H+   G   D F  + L+     S + S++ A  +F +      + +N +
Sbjct: 43  SMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTM 102

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
            R    +   EE L LY  M     GI  D FTY +VLKAC         LK G +IHA 
Sbjct: 103 IRGNVNSMDLEEALLLYVEM--LERGIEPDNFTYPFVLKACSL----LVALKEGVQIHAH 156

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
           V + G    V +   LI MY + G + +AG VF QM  K+V SWS++I  +A   M  E 
Sbjct: 157 VFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHEC 216

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
           L L  +M  E       S+ +VS L AC  L +   G+ IHG +LR   +  + V ++L+
Sbjct: 217 LMLLGDMSGEGRHRAEESI-LVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLI 275

Query: 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI 392
            MY +CG LE G CVF +M  ++  S+  +I+   +HG G +A+++F +M+  G++P  +
Sbjct: 276 DMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDV 335

Query: 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
            +V VL ACSHAGLV EG   F  M+ EHMI+P+++HY CMVDL+GRA  L+EA  +I+ 
Sbjct: 336 VYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKS 395

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
           + I+P   VW SLL +C++H N+E+ E A++ +F L   N G+Y++LA++YA A  W  V
Sbjct: 396 MPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYARAKKWANV 455

Query: 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV 572
            R++  +  + L + PG S +E  R +Y FVS D+  P  E ++ ++  +  ++K +GY 
Sbjct: 456 ARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYT 515

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
           P    VL D+D +EK + +  HS+KLA+AF LI TS+G  IRI++NLR+C DCH++TKFI
Sbjct: 516 PDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFI 575

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           S    +EI VRD NRFHHF++G CSC DYW
Sbjct: 576 SVIYEREITVRDRNRFHHFKDGTCSCKDYW 605



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 180/401 (44%), Gaps = 46/401 (11%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+      +L +AL    ++L     P   TY  +L +C+   +L + + +H+H+  
Sbjct: 100 NTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFK 159

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G + D F+   LI++Y    +++ A  VF++   +++  W+++  A        E L L
Sbjct: 160 AGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLML 219

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
              M+G G   R++       L AC  +  G   L  G+ IH  +LR+     V + T+L
Sbjct: 220 LGDMSGEGRH-RAEESILVSALSAC--THLGSPNL--GRCIHGILLRNISELNVVVKTSL 274

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY + G +     VF  MA KN  S++ MIA  A +G   EA+ +F +M+ E   L P
Sbjct: 275 IDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEG--LTP 332

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + V  V VL AC+           H  ++  GL               +C      +  F
Sbjct: 333 DDVVYVGVLSACS-----------HAGLVNEGL---------------QC----FNRMQF 362

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           +HM K  +  +  ++   G  G   +A  + K M    + P+ + + S+L AC     +E
Sbjct: 363 EHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSM---PIKPNDVVWRSLLSACKVHHNLE 419

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
            G++  E++ + +   P    Y  + ++  RA K    A+I
Sbjct: 420 IGEIAAENIFRLNKHNPG--DYLVLANMYARAKKWANVARI 458


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/614 (36%), Positives = 365/614 (59%), Gaps = 12/614 (1%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI      G+  +A+++L    S    P       +L +C    +      +H  +  
Sbjct: 272 NALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIK 331

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              D D ++   L+++Y+    +DDA  VFD    R + +WNAL    +  GR +E   +
Sbjct: 332 ANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSI 391

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  +   G G+  +R T   VLK    S+         +++HA   + G+    H++  L
Sbjct: 392 FYGLRKEGLGV--NRTTLAAVLK----STASLEAASATRQVHALAEKIGFIFDAHVVNGL 445

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           ID Y +  C+  A  VF + +  ++++ ++MI   ++      A++LF EM+ +   L P
Sbjct: 446 IDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKG--LEP 503

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +   + S+L ACA+L+A EQGK +H ++++R   S     +ALV  YA+CG +E  +  F
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 563

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             + +R VVSW+++I     HG+G +A+++F  M+  G++P+ I+  SVL AC+HAGLV+
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           E K  F SM++   I  + EHY+CM+DLLGRA KL++A +++  +  +    VWG+LLG+
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGA 683

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
            R+H + EL + A+++LF LEP  +G +VLLA+ YA++ MW+EV +V++L++   ++K P
Sbjct: 684 SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEP 743

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
             S +EVK K+++F+  D+ HP  +++++ L  L   M + GY+P   V L+DLD  EKE
Sbjct: 744 AMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKE 803

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
            ++  HSE+LAVAF L++T  G  IR+ KNLR+C DCH   KFIS   ++EI++RD+NRF
Sbjct: 804 LLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRF 863

Query: 649 HHFRNGVCSCGDYW 662
           HHFR+G CSCGDYW
Sbjct: 864 HHFRDGTCSCGDYW 877



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 207/441 (46%), Gaps = 15/441 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            PT+  +  ++ +CT   ++     VH+ +   G+++D F    L+++Y     VD A  
Sbjct: 199 QPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASV 258

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +F+K     +  WNAL     L G     +EL  +M    +G+  + F  + +LKAC A 
Sbjct: 259 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK--SSGLVPNVFMLSSILKAC-AG 315

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           +  F L   G++IH  +++   +   +I   L+DMYA+   +  A  VF  M+ ++++ W
Sbjct: 316 AGAFDL---GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILW 372

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +A+I+  +  G   EA  +F  +  E   L  N  T+ +VL++ A+L A    + +H   
Sbjct: 373 NALISGCSHGGRHDEAFSIFYGLRKEG--LGVNRTTLAAVLKSTASLEAASATRQVHALA 430

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            + G      VV+ L+  Y +C  L     VF+     D+++  S+I++     +G  AI
Sbjct: 431 EKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAI 490

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           ++F EM+  G+ P P    S+L AC+     E+GK +   + K   +  +    A +V  
Sbjct: 491 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYT 549

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
             +   +E+A      L  E G   W +++G    H + + A     R+ + E  N  N+
Sbjct: 550 YAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVD-EGINP-NH 606

Query: 497 VLLADVYAA---ADMWDEVKR 514
           + +  V  A   A + DE KR
Sbjct: 607 ITMTSVLCACNHAGLVDEAKR 627



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 180/372 (48%), Gaps = 20/372 (5%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           ++H++L  +GF     L   LI+ YS       AR VFD+        W++L  A +  G
Sbjct: 25  HLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNG 82

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
                ++ +  M   G  +  + F    VLK CV  +      + G ++HA  +  G+  
Sbjct: 83  LPRSAIQAFHGMRAEG--VCCNEFALPVVLK-CVPDA------QLGAQVHAMAMATGFGS 133

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNVVSWSAMIACYARNGMAFEALELFREM 279
            V +   L+ MY  FG +  A  VF +    +N VSW+ +++ Y +N    +A+++F EM
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           +     + P       V+ AC     ++ G+ +H  ++R G +  +   +ALV MY + G
Sbjct: 194 VWSG--IQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMG 251

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           ++++   +F+ M   DVVSWN+LIS   ++G+  +AI++  +M   G+ P+     S+L 
Sbjct: 252 RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILK 311

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHY--ACMVDLLGRANKLEEAAKIIEDLRIEP 457
           AC+ AG  + G+ +   M K +      + Y    +VD+  + + L++A K+  D     
Sbjct: 312 ACAGAGAFDLGRQIHGFMIKAN---ADSDDYIGVGLVDMYAKNHFLDDAMKVF-DWMSHR 367

Query: 458 GPKVWGSLLGSC 469
              +W +L+  C
Sbjct: 368 DLILWNALISGC 379


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/572 (39%), Positives = 348/572 (60%), Gaps = 10/572 (1%)

Query: 92  HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNA 151
           H   L +   VH++      D D  +   L+++Y     ++ + HVFD+ R +    W  
Sbjct: 378 HLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTT 437

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           +      + R  E LE++R       GI+ D      +L+AC     G   +   K++H 
Sbjct: 438 IITCYAQSSRHIEALEIFRE--AQKEGIKVDPMMIGSILEAC----SGLETILLAKQLHC 491

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
             +R+G   +V +   +ID+Y   G V ++  +F  +  K++V+W++MI CYA +G+  E
Sbjct: 492 YAIRNGLLDLV-VKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNE 550

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           AL LF EM  +S D+ P+SV +VS+L A   L++L +GK +HG+++RR       +VS+L
Sbjct: 551 ALVLFAEM--QSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSL 608

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           V MY+ CG L     VF+ +  +D+V W ++I++ G+HG+G +AI +FK M+  GV+P  
Sbjct: 609 VDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDH 668

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           +SF+++L ACSH+ LV EGK   + M   + + P  EHYAC+VDLLGR+ + EEA + I+
Sbjct: 669 VSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIK 728

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
            + ++P   VW SLLG+CR+H N ELA  A+ RL ELEP N GNYVL+++V+A    W+ 
Sbjct: 729 SMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNN 788

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM-KEKG 570
            K V+  +  RGL+K P  S IE+   +++F + D  H   E+++  L  ++  + KE G
Sbjct: 789 AKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGG 848

Query: 571 YVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTK 630
           Y   T+ VL+D+  EEK  ++  HSE+LA++FGLINT  G  +RI KNLR+C DCH FTK
Sbjct: 849 YTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTK 908

Query: 631 FISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            +SK  +++I+VRD NRFHHF  G CSCGD+W
Sbjct: 909 LVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 145/445 (32%), Positives = 224/445 (50%), Gaps = 23/445 (5%)

Query: 19  TNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEP-- 76
             ++   PP P           STTP S+S  +   L Q LCK+GNLRQAL +L+ +   
Sbjct: 2   ATAVLSFPPNPYK-------KFSTTPPSISPPDPTSLKQ-LCKEGNLRQALRLLTSQTPG 53

Query: 77  -NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF--DQDPFLVTKLINVYSHFDSVDD 133
            +P Q  Y  +L       +++  + VH+H    G     D FL TKL+ +Y     V D
Sbjct: 54  RSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVAD 113

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN-GTGTGIRSDRFTYTYVLKA 192
           AR +FD    RT++ WNAL  A   +G   E L +YR M     +G+  D  T   VLKA
Sbjct: 114 ARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKA 173

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM-AVK 251
                 G    + G E+H   ++HG +    +   LI MYA+ G +  A  VF  M   +
Sbjct: 174 SGVEGDG----RCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGR 229

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +V SW++MI+   +NGM  +AL+LFR   M+   L  NS T V VLQ C  LA L  G+ 
Sbjct: 230 DVASWNSMISGCLQNGMFLQALDLFRG--MQRAVLSMNSYTTVGVLQVCTELAQLNLGRE 287

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +H  +L+ G +  +   +AL+ MY +CG+++    VF  +D++D +SWNS++S Y  +G 
Sbjct: 288 LHAALLKSGSEVNIQ-CNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGL 346

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             +AI+   EM+  G  P     VS+  A  H G +  GK +     K+ +     +   
Sbjct: 347 YAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRL-DSDTQVGN 405

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIE 456
            ++D+  +   +E +A + + +RI+
Sbjct: 406 TLMDMYMKCRYIEYSAHVFDRMRIK 430



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 187/392 (47%), Gaps = 16/392 (4%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR-RTIYVWNALFRALTLAG 160
           VH     +G D+  F+   LI +Y+    +D A  VF+     R +  WN++       G
Sbjct: 186 VHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNG 245

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
              + L+L+R M      + S  +T   VL+ C       + L  G+E+HA++L+ G   
Sbjct: 246 MFLQALDLFRGMQRAVLSMNS--YTTVGVLQVCTE----LAQLNLGRELHAALLKSGSEV 299

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            +     L+ MY + G V  A  VF ++  K+ +SW++M++CY +NG+  EA+E   EM+
Sbjct: 300 NIQCNALLV-MYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEML 358

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
                  P+   +VS+  A   L  L  GK +H Y +++ LDS   V + L+ MY +C  
Sbjct: 359 RGGFQ--PDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRY 416

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +E    VFD M  +D +SW ++I+ Y       +A++IF+E    G+   P+   S+L A
Sbjct: 417 IEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEA 476

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
           CS    +   K L     +  ++   V++   ++D+ G   ++  + K+ E +  +    
Sbjct: 477 CSGLETILLAKQLHCYAIRNGLLDLVVKNR--IIDIYGECGEVYHSLKMFETVE-QKDIV 533

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
            W S++     + N  L   A     E++ T+
Sbjct: 534 TWTSMI---NCYANSGLLNEALVLFAEMQSTD 562


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/576 (38%), Positives = 346/576 (60%), Gaps = 22/576 (3%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVY-------SHFDSVDDA-------RHVFDKTRRRTI 146
           ++H+    +G   D F    L+N+Y       SH   +D +       R VFD+   + +
Sbjct: 79  SLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDV 138

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206
             WN L      +GR  E L L R M     G + D FT + VL      +     ++ G
Sbjct: 139 VSWNTLVLGCAESGRHGEALGLVREM--WRDGCKPDSFTLSSVLPIFAEGAD----VRRG 192

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
            E+H    R+G++  V + ++LIDMYA      Y+  VF  + V++ + W++M+A  A+N
Sbjct: 193 MELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQN 252

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           G   EAL LFR M+     + P  VT  S++ AC  LA+L  GK +H Y++R G D  + 
Sbjct: 253 GSVDEALGLFRRMLHSG--IKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVF 310

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           + S+L+ MY +CG + + + +FD +   D+VSW ++I  + +HG   +A+ +F  M    
Sbjct: 311 ISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGN 370

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           + P+ I+F++VL ACSHAGLV++G   F SM   + I PS+EH+A + D LGR  KLEEA
Sbjct: 371 LKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEA 430

Query: 447 AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
              I  ++I+P   VW +LL +C++H N  LAE  +K++F+LEP + G++++L++ Y+++
Sbjct: 431 YNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSS 490

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
             W+E   +++ +  +G+QK P  S IEVK K + FV+ D+ HP +E++   L   S +M
Sbjct: 491 GRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQM 550

Query: 567 KEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
             +GYVP T  V  D++ E+K  ++ GHSEKLA+ FG+I+T  G TIR+ KNLR+C DCH
Sbjct: 551 VRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCH 610

Query: 627 SFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + TKFISK   +EI++RD NRFHHF++G+CSCGD+W
Sbjct: 611 TVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 18/248 (7%)

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV--TMVSVLQACAALAALEQGKMI 312
           SW+  I   A  G    A+ LF  M         +SV  ++   L++CAAL     G  +
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGK--------------LELGQCVFDHMDKRDVVS 358
           H   LR G  +     +AL+ +Y +                 LE  + VFD M ++DVVS
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           WN+L+      G  G+A+ + +EM   G  P   +  SVL   +    V  G M      
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRG-MELHGFA 199

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
             +     V   + ++D+     + + + K+ ++L +     +W S+L  C  + +V+ A
Sbjct: 200 TRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDA-ILWNSMLAGCAQNGSVDEA 258

Query: 479 ERASKRLF 486
               +R+ 
Sbjct: 259 LGLFRRML 266



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 110/250 (44%), Gaps = 26/250 (10%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N ++    + G++ +AL +        I+P P   T+  L+ +C +  SL     +H+++
Sbjct: 243 NSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPV--TFSSLIPACGNLASLLLGKQLHAYV 300

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
              GFD + F+ + LI++Y    +V  AR +FD+ +   I  W A+     L G   E L
Sbjct: 301 IRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREAL 360

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM- 225
            L+ RM      ++ +  T+  VL AC  S  G  L+  G +   S+  H   GIV  + 
Sbjct: 361 VLFDRME--LGNLKPNHITFLAVLTAC--SHAG--LVDKGWKYFNSMSDH--YGIVPSLE 412

Query: 226 --TTLIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMI-ACYARNGMAFEALELFREMIM 281
               L D   R G +  A    S M +K   S WS ++ AC            L  E+  
Sbjct: 413 HHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTV-----LAEEVAK 467

Query: 282 ESHDLCPNSV 291
           +  DL P S+
Sbjct: 468 KIFDLEPRSM 477


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/684 (35%), Positives = 374/684 (54%), Gaps = 45/684 (6%)

Query: 14  RSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL---- 69
           R  +  NS+ H   +   + C   +    +  ++ S     LI    K+G  ++A+    
Sbjct: 172 RDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTS--LIGGYAKRGCYKEAVSLFF 229

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
           +++ +   P   T   ++ +C     L     V + + +   + +  +V  L+++Y    
Sbjct: 230 EMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCG 289

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           ++D AR +FD+   + + ++N +       G   EVL +   M     G R DR T    
Sbjct: 290 AIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEM--LKHGPRPDRITMLSA 347

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           + AC         +  GK  H  VLR+G  G  ++   +I+MY + G    A  VF +M 
Sbjct: 348 VSACSE----LDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRML 403

Query: 250 VKNVVSWSAMIACYARNG-------------------------------MAFEALELFRE 278
            K  VSW+++IA + RNG                               M  EA+ELFR 
Sbjct: 404 NKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFR- 462

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
            +M+S  +  + VTMV V  AC  L AL+  K IHGYI ++ +   + + +ALV M+ARC
Sbjct: 463 -VMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARC 521

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G  +    VF+ M KRDV +W + I +  + G G  AI++F EM+  G+ P  + FV++L
Sbjct: 522 GDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALL 581

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            A SH GLVE+G  +F SM+  + I P   HY CMVDLLGRA  L EA  +I  +++EP 
Sbjct: 582 TALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPN 641

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             +WGSLL +CR+H NV++A  A++R+ EL+P   G +VLL+++YA+A  WD+V +V+  
Sbjct: 642 DVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLH 701

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
           L+ +G  K+PG S IE+  K++ F + DE HP+   +  +L  +   +++ GYVP    V
Sbjct: 702 LKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNV 761

Query: 579 LYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANK 638
           L D++ +EKE ++  HSEKLA+AF LI+T +G  IR+ KNLR+C DCHSF K +SK  ++
Sbjct: 762 LLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSR 821

Query: 639 EILVRDVNRFHHFRNGVCSCGDYW 662
           EI+VRD NRFH F+ G CSCGDYW
Sbjct: 822 EIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 198/428 (46%), Gaps = 41/428 (9%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+  +L +CT   +L++   VH  +   GF++D F+   LI+ Y     +D  R V
Sbjct: 137 PDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRV 196

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FDK   R +  W +L       G  +E + L+  M     GIR +  T   V+ AC    
Sbjct: 197 FDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEM--VEVGIRPNSVTMVGVISACAK-- 252

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L+ G+++   +          ++  L+DMY + G +  A  +F +   KN+V ++
Sbjct: 253 --LQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYN 310

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            +++ Y R G+A E L +  EM+   H   P+ +TM+S + AC+ L  +  GK  HGY+L
Sbjct: 311 TIMSNYVRQGLAREVLAVLGEML--KHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVL 368

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG------- 370
           R GL+    V +A++ MY +CGK E+   VFD M  +  VSWNSLI+ +  +G       
Sbjct: 369 RNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWK 428

Query: 371 ----------------YGG--------KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
                            G         +AI++F+ M   G++   ++ V V  AC + G 
Sbjct: 429 IFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGA 488

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           ++  K +   ++K+  I   +     +VD+  R    + A ++   + ++     W + +
Sbjct: 489 LDLAKWIHGYIKKKD-IHFDMHLGTALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAI 546

Query: 467 GSCRIHCN 474
           G+  +  N
Sbjct: 547 GAMAMEGN 554



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 242/496 (48%), Gaps = 52/496 (10%)

Query: 42  TTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALN 101
            TPTS++  N+NEL + L K               +PT         S     ++++   
Sbjct: 13  ATPTSVALPNQNEL-KILTKH------------RSSPTG--------SFKKCKTMTELKQ 51

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSH---FDSVDDARHVF-----DKTRRRTIYVWNALF 153
           +HS +T NG +  P  +T LI+  +    F+S++ A+        D     T Y++++L 
Sbjct: 52  LHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLI 111

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           R  +  G G + + ++R++     G   D FT+ +VL AC  S+     L  G ++H ++
Sbjct: 112 RGFSACGLGYKAIVVFRQL--MCMGAVPDNFTFPFVLSACTKSAA----LTEGFQVHGAI 165

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           ++ G+   + +  +LI  Y   G +     VF +M+ +NVVSW+++I  YA+ G   EA+
Sbjct: 166 VKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAV 225

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
            LF EM+     + PNSVTMV V+ ACA L  L+ G+ +   I    L+    +V+ALV 
Sbjct: 226 SLFFEMV--EVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVD 283

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MY +CG ++  + +FD    +++V +N+++S+Y   G   + + +  EM+ HG  P  I+
Sbjct: 284 MYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRIT 343

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY----ACMVDLLGRANKLEEAAKI 449
            +S + ACS    V  GK         +++R  +E +      ++++  +  K E A ++
Sbjct: 344 MLSAVSACSELDDVSCGKWC-----HGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRV 398

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP-TNAGNYVLLADVYAAADM 508
             D  +      W SL+     + ++E    ++ ++F   P ++  ++  +        M
Sbjct: 399 F-DRMLNKTRVSWNSLIAGFVRNGDME----SAWKIFSAMPDSDLVSWNTMIGALVQESM 453

Query: 509 WDEVKRVKRLLEARGL 524
           + E   + R++++ G+
Sbjct: 454 FKEAIELFRVMQSEGI 469


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/614 (36%), Positives = 365/614 (59%), Gaps = 12/614 (1%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI      G+  +A+++L    S    P       +L +C    +      +H  +  
Sbjct: 179 NALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIK 238

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              D D ++   L+++Y+    +DDA  VFD    R + +WNAL    +  GR +E   +
Sbjct: 239 ANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSI 298

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  +   G G+  +R T   VLK    S+         +++HA   + G+    H++  L
Sbjct: 299 FYGLRKEGLGV--NRTTLAAVLK----STASLEAASATRQVHALAEKIGFIFDAHVVNGL 352

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           ID Y +  C+  A  VF + +  ++++ ++MI   ++      A++LF EM+ +   L P
Sbjct: 353 IDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKG--LEP 410

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +   + S+L ACA+L+A EQGK +H ++++R   S     +ALV  YA+CG +E  +  F
Sbjct: 411 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 470

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             + +R VVSW+++I     HG+G +A+++F  M+  G++P+ I+  SVL AC+HAGLV+
Sbjct: 471 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 530

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           E K  F SM++   I  + EHY+CM+DLLGRA KL++A +++  +  +    VWG+LLG+
Sbjct: 531 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGA 590

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
            R+H + EL + A+++LF LEP  +G +VLLA+ YA++ MW+EV +V++L++   ++K P
Sbjct: 591 SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEP 650

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
             S +EVK K+++F+  D+ HP  +++++ L  L   M + GY+P   V L+DLD  EKE
Sbjct: 651 AMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKE 710

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
            ++  HSE+LAVAF L++T  G  IR+ KNLR+C DCH   KFIS   ++EI++RD+NRF
Sbjct: 711 LLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRF 770

Query: 649 HHFRNGVCSCGDYW 662
           HHFR+G CSCGDYW
Sbjct: 771 HHFRDGTCSCGDYW 784



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/408 (29%), Positives = 192/408 (47%), Gaps = 52/408 (12%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT-RRRTIYVWNALFRALTLA 159
            VH+     GF  D F+   L+ +Y  F  +DDAR VFD+    R    WN L  A    
Sbjct: 28  QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 87

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
            +  + ++++  M    +GI+   F ++ V+ AC  S      +  G+++HA V+R GY 
Sbjct: 88  DQCGDAIQVFGEM--VWSGIQPTEFGFSCVVNACTGSRN----IDAGRQVHAMVVRMGYE 141

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             V     L+DMY + G V  A  +F +M   +VVSW+A+I+    NG    A+EL  + 
Sbjct: 142 KDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ- 200

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
            M+S  L PN   + S+L+ACA   A + G+ IHG++++   DS   +   LV MYA+  
Sbjct: 201 -MKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNH 259

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            L+    VFD M  RD++ WN+LIS     G   +A  IF  +   G+  +  +  +VL 
Sbjct: 260 FLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLK 319

Query: 400 ACS-----------HAGLVEEGKMLFESMRKEHMIRPSVEHY------------------ 430
           + +           HA L E+   +F++    H++   ++ Y                  
Sbjct: 320 STASLEAASATRQVHA-LAEKIGFIFDA----HVVNGLIDSYWKCSCLSDAIRVFEECSS 374

Query: 431 ------ACMVDLLGRANKLEEAAKI-IEDLR--IEPGPKVWGSLLGSC 469
                   M+  L + +  E A K+ +E LR  +EP P V  SLL +C
Sbjct: 375 GDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 422



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 207/441 (46%), Gaps = 15/441 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            PT+  +  ++ +CT   ++     VH+ +   G+++D F    L+++Y     VD A  
Sbjct: 106 QPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASV 165

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +F+K     +  WNAL     L G     +EL  +M    +G+  + F  + +LKAC A 
Sbjct: 166 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK--SSGLVPNVFMLSSILKAC-AG 222

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           +  F L   G++IH  +++   +   +I   L+DMYA+   +  A  VF  M+ ++++ W
Sbjct: 223 AGAFDL---GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILW 279

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +A+I+  +  G   EA  +F  +  E   L  N  T+ +VL++ A+L A    + +H   
Sbjct: 280 NALISGCSHGGRHDEAFSIFYGLRKEG--LGVNRTTLAAVLKSTASLEAASATRQVHALA 337

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            + G      VV+ L+  Y +C  L     VF+     D+++  S+I++     +G  AI
Sbjct: 338 EKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAI 397

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           ++F EM+  G+ P P    S+L AC+     E+GK +   + K   +  +    A +V  
Sbjct: 398 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYT 456

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
             +   +E+A      L  E G   W +++G    H + + A     R+ + E  N  N+
Sbjct: 457 YAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVD-EGINP-NH 513

Query: 497 VLLADVYAA---ADMWDEVKR 514
           + +  V  A   A + DE KR
Sbjct: 514 ITMTSVLCACNHAGLVDEAKR 534



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 148/295 (50%), Gaps = 16/295 (5%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G+  + F    VLK CV  +      + G ++HA  +  G+   V +   L+ MY  FG 
Sbjct: 5   GVCCNEFALPVVLK-CVPDA------QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 238 VMYAGFVFSQMAV-KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
           +  A  VF +    +N VSW+ +++ Y +N    +A+++F EM+     + P       V
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG--IQPTEFGFSCV 115

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           + AC     ++ G+ +H  ++R G +  +   +ALV MY + G++++   +F+ M   DV
Sbjct: 116 VNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDV 175

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           VSWN+LIS   ++G+  +AI++  +M   G+ P+     S+L AC+ AG  + G+ +   
Sbjct: 176 VSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGF 235

Query: 417 MRKEHMIRPSVEHY--ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           M K +      + Y    +VD+  + + L++A K+  D        +W +L+  C
Sbjct: 236 MIKAN---ADSDDYIGVGLVDMYAKNHFLDDAMKVF-DWMSHRDLILWNALISGC 286


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/497 (44%), Positives = 318/497 (63%), Gaps = 10/497 (2%)

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           +Y RM      +  ++FTY  +++AC    C    ++ GK+IHA VL+ G+      +  
Sbjct: 81  MYSRM--LHKSVSPNKFTYPPLIRAC----CIDYAIEEGKQIHAHVLKFGFGADGFSLNN 134

Query: 228 LIDMYARFGCVMYAGFVFSQMAVK--NVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           LI MY  F  +  A  VF  M  +  N VSW+AMIA Y ++    EA  LF  M +E  +
Sbjct: 135 LIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLE--N 192

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           +  +     S+L AC  L ALEQGK IHGYI + G++    + + ++ MY +CG LE   
Sbjct: 193 VVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKAS 252

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VF+ + ++ + SWN +I    +HG G  AI++FKEM    V+P  I+FV+VL AC+H+G
Sbjct: 253 EVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSG 312

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           LVEEGK  F+ M +   ++P +EH+ CMVDLLGRA  LEEA K+I ++ + P   V G+L
Sbjct: 313 LVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGAL 372

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           +G+CRIH N EL E+  K++ ELEP N+G YVLLA++YA+A  W++V +V++L+  RG++
Sbjct: 373 VGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVK 432

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K PG S IE +  +  F++    HPQ ++++A L  +   ++  GYVP T  VL+D+D E
Sbjct: 433 KAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEE 492

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           EKE  +  HSEKLA+AFGL+ T  GET+RI+KNLR+C DCH  +K ISK  ++EI++RD 
Sbjct: 493 EKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDR 552

Query: 646 NRFHHFRNGVCSCGDYW 662
           NRFHHFR G CSC DYW
Sbjct: 553 NRFHHFRMGGCSCKDYW 569



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 153/311 (49%), Gaps = 12/311 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P + TY  L+ +C    ++ +   +H+H+   GF  D F +  LI++Y +F S++ AR 
Sbjct: 91  SPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARR 150

Query: 137 VFDK--TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           VFD    R R    WNA+  A   + R  E   L+ RM      +  D+F    +L AC 
Sbjct: 151 VFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVL--DKFVAASMLSACT 208

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
               G   L+ GK IH  + + G      + TT+IDMY + GC+  A  VF+++  K + 
Sbjct: 209 ----GLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGIS 264

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           SW+ MI   A +G    A+ELF+E  ME   + P+ +T V+VL ACA    +E+GK    
Sbjct: 265 SWNCMIGGLAMHGKGEAAIELFKE--MEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQ 322

Query: 315 YILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYG 372
           Y+    GL   +     +V +  R G LE  + + + M    D     +L+ +  +HG  
Sbjct: 323 YMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNT 382

Query: 373 GKAIQIFKEMI 383
               QI K++I
Sbjct: 383 ELGEQIGKKVI 393



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 124/256 (48%), Gaps = 7/256 (2%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI-ACYARNGMAFEALELFREMIMESH 284
           +T+ ++      ++  G      A+  V+ + A+  + Y R  +A   + ++  M+ +S 
Sbjct: 31  STMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGYLRWQLARNCIFMYSRMLHKS- 89

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
            + PN  T   +++AC    A+E+GK IH ++L+ G  +    ++ L+ MY     LE  
Sbjct: 90  -VSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQA 148

Query: 345 QCVFDHMDKRD--VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
           + VFD+M +RD   VSWN++I++Y       +A  +F  M    V        S+L AC+
Sbjct: 149 RRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACT 208

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
             G +E+GK +   + K   I    +    ++D+  +   LE+A+++  +L  + G   W
Sbjct: 209 GLGALEQGKWIHGYIEKSG-IELDSKLATTVIDMYCKCGCLEKASEVFNELP-QKGISSW 266

Query: 463 GSLLGSCRIHCNVELA 478
             ++G   +H   E A
Sbjct: 267 NCMIGGLAMHGKGEAA 282



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 126/306 (41%), Gaps = 55/306 (17%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L +CT   +L     +H ++  +G + D  L T +I++Y     ++ A  VF++  ++ 
Sbjct: 203 MLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKG 262

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           I  WN +   L + G+GE  +EL++ M      +  D  T+  VL AC  S     L++ 
Sbjct: 263 ISSWNCMIGGLAMHGKGEAAIELFKEME--REMVAPDGITFVNVLSACAHS----GLVEE 316

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK        H +  +  ++     M   FGC                     M+    R
Sbjct: 317 GK--------HYFQYMTEVLGLKPGM-EHFGC---------------------MVDLLGR 346

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G+  EA +L  EM +      P++  + +++ AC      E G+ I   ++      + 
Sbjct: 347 AGLLEEARKLINEMPVN-----PDAGVLGALVGACRIHGNTELGEQIGKKVIE-----LE 396

Query: 326 PVVSA----LVTMYARCGKLELGQCVFDHMDKRDV---VSWNSLISSYGVHGY--GGKAI 376
           P  S     L  +YA  G+ E    V   M+ R V     ++ + S  GV  +  GG+A 
Sbjct: 397 PHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAH 456

Query: 377 QIFKEM 382
              KE+
Sbjct: 457 PQAKEI 462


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/608 (39%), Positives = 370/608 (60%), Gaps = 28/608 (4%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           L+  L +QG L Q   V         H Y +   +C H N      N  S LTD      
Sbjct: 234 LLPLLAQQGALAQGTSV---------HAYRIR--ACLHSNR-----NSKSKLTDG----- 272

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             L T L+++Y+   S+  AR VFD    R    W+AL     L  R  +   L++ M  
Sbjct: 273 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 332

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
            G    S   +    L+AC +       L+ G+++HA + + G +  +    +L+ MYA+
Sbjct: 333 QGLCFLSPT-SIASALRACAS----LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 387

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A  +F +MAVK+ VS+SA+++ Y +NG A EA  +F++M  ++ ++ P++ TMV
Sbjct: 388 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKM--QACNVEPDAATMV 445

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           S++ AC+ LAAL+ G+  HG ++ RGL S   + +AL+ MYA+CG+++L + VF+ M  R
Sbjct: 446 SLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR 505

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           D+VSWN++I+ YG+HG G +A  +F EM   G  P  ++F+ +L ACSH+GLV EGK  F
Sbjct: 506 DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWF 565

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
             MR  + + P +EHY CMVDLL R   L+EA + I+ + +    +VW +LLG+CR++ N
Sbjct: 566 HVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKN 625

Query: 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
           ++L ++ S+ + EL P   GN+VLL+++Y+AA  +DE   V+ + + +G +K PG S IE
Sbjct: 626 IDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 685

Query: 535 VKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGH 594
           +   +++FV  D+ HPQ  +++  L N+   +K+ GY P T  VL DL+ EEKE+ ++ H
Sbjct: 686 INGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICH 745

Query: 595 SEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
           SEKLA+A+G+++ S+ +TI +TKNLR+C DCH+  K IS    + I+VRD NRFHHF+NG
Sbjct: 746 SEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNG 805

Query: 655 VCSCGDYW 662
            CSCGD+W
Sbjct: 806 QCSCGDFW 813



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 170/339 (50%), Gaps = 26/339 (7%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAG--RGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
           A H+FD+     +  +N L RA + +      + L LYRRM      +  + +T+ + LK
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRM--LRHRVAPNNYTFPFALK 133

Query: 192 ACVASSCGFSLLKH--GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           AC A      L  H  G+ IH   +  G    + + T L+DMY +  C+  A  +F+ M 
Sbjct: 134 ACSA------LADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMP 187

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            +++V+W+AM+A YA +GM   A+     M M+ H L PN+ T+V++L   A   AL QG
Sbjct: 188 ARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG 247

Query: 310 KMIHGYILRRGL-----------DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
             +H Y +R  L           D +L + +AL+ MYA+CG L   + VFD M  R+ V+
Sbjct: 248 TSVHAYRIRACLHSNRNSKSKLTDGVL-LGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PSPISFVSVLGACSHAGLVEEGKMLFESM 417
           W++LI  + +     +A  +FK M+  G+   SP S  S L AC+    +  G+ L   +
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALL 366

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
            K   +   +     ++ +  +A  +++A  + +++ ++
Sbjct: 367 AKSG-VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK 404



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 168/349 (48%), Gaps = 25/349 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSD---ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           P  +T+   L +C+   +L+D      +H H    G   D F+ T L+++Y     + DA
Sbjct: 123 PNNYTFPFALKACS---ALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDA 179

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
            H+F     R +  WNA+       G     +     M      +R +  T   +L    
Sbjct: 180 AHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLA 239

Query: 195 ASSCGFSLLKHGKEIHASVLR---HG--------YNGIVHIMTTLIDMYARFGCVMYAGF 243
                   L  G  +HA  +R   H          +G++ + T L+DMYA+ G ++YA  
Sbjct: 240 QQGA----LAQGTSVHAYRIRACLHSNRNSKSKLTDGVL-LGTALLDMYAKCGSLLYARR 294

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT-MVSVLQACAA 302
           VF  M  +N V+WSA+I  +       +A  LF+ M+ +   LC  S T + S L+ACA+
Sbjct: 295 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG--LCFLSPTSIASALRACAS 352

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           L  L  G+ +H  + + G+ + L   ++L++MYA+ G ++    +FD M  +D VS+++L
Sbjct: 353 LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSAL 412

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           +S Y  +G   +A  +FK+M    V P   + VS++ ACSH   ++ G+
Sbjct: 413 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 461


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/587 (38%), Positives = 353/587 (60%), Gaps = 10/587 (1%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           NP       LL +  H   L +   VH++      D D  +   L+++Y    SV+ +  
Sbjct: 362 NPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSAR 421

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD+ R +    W  +      + R  E +  +R       GI+ D      +L+AC   
Sbjct: 422 VFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFR--TAQKEGIKVDPMMMGSILEAC--- 476

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
             G   +   K++H+  +R+G   ++ +   +ID+Y   G V YA  +F  +  K++V+W
Sbjct: 477 -SGLKSISLLKQVHSYAIRNGLLDLI-LKNRIIDIYGECGEVCYALNIFEMLDKKDIVTW 534

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           ++M+ C+A NG+  EA+ LF +M+  +  + P+SV +V +L A A L++L +GK IHG++
Sbjct: 535 TSMVNCFAENGLLHEAVALFGKML--NAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFL 592

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           +R        VVS+LV MY+ CG +     VFD    +DVV W ++I++ G+HG+G +AI
Sbjct: 593 IRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAI 652

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            IFK M+  GVSP  +SF+++L ACSH+ LV+EGK   + M  ++ ++P  EHYAC+VDL
Sbjct: 653 YIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDL 712

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGR+ + EEA K I+ + +EP   VW +LLG+CRIH N ELA  A+ +L ELEP N GNY
Sbjct: 713 LGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNY 772

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VL+++V+A    W+ VK ++  +  +GL+K P  S IE+   +++F + D  H   + +H
Sbjct: 773 VLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIH 832

Query: 557 ALLINLSAEMKEKG-YVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
             L  ++ +++ +G YV  T  VL+D+  EEK  ++  HSE+LA++FGLI+T+ G  +RI
Sbjct: 833 LKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRI 892

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C DCH FTK +SK   +EI+VRD NRFHHF  G CSCGD+W
Sbjct: 893 AKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 133/413 (32%), Positives = 210/413 (50%), Gaps = 21/413 (5%)

Query: 56  IQSLCKQGNLRQALDVLSIE------PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDN 109
           ++ LCK G+LR+AL  L+        P PT H Y  +L       ++S+   +H+H    
Sbjct: 26  LRQLCKDGDLREALRQLAARSARGRAPPPTDH-YGWVLDLVAVRRAVSEGRQLHAHAVAT 84

Query: 110 GF---DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           G    D   FL TKL+ +Y     + DA  +FD    RT++ WNAL  A   +G   E +
Sbjct: 85  GALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAV 144

Query: 167 ELYRRMNGTG--TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
            +YR M  +    G   D  T   VLKAC A   G    + G E+H   ++ G +    +
Sbjct: 145 GVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDG----RCGSEVHGLAVKSGLDRSTLV 200

Query: 225 MTTLIDMYARFGCVMYAGFVFSQM-AVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
              L+ MYA+ G +  A  VF  M   ++V SW++ I+   +NGM  EAL+LFR M  +S
Sbjct: 201 ANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRM--QS 258

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
                NS T V VLQ CA LA L  G+ +H  +L+ G +  +   +AL+ MYARCG ++ 
Sbjct: 259 DGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC-NALLVMYARCGWVDS 317

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              VF  +  +D +SWNS++S Y  +    +AI  F EM+ +G +P     VS+L A  H
Sbjct: 318 ALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGH 377

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
            G +  G+ +     K+ +    ++    ++D+  +   +E +A++ + +RI+
Sbjct: 378 LGRLINGREVHAYAVKQRL-DSDLQIANTLMDMYIKCYSVECSARVFDRMRIK 429


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/591 (39%), Positives = 352/591 (59%), Gaps = 47/591 (7%)

Query: 111 FDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FD+ P    F+ T LI  Y     +  AR + D    +    WNA+       G  E+ L
Sbjct: 215 FDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDAL 274

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG----IV 222
            L+R+M   G  ++ D  TYT V+ AC  +  GF LL  GK++HA +L++  N     ++
Sbjct: 275 TLFRKMRLLG--VQVDESTYTSVISAC--ADGGFFLL--GKQVHAYILKNELNPDRDFLL 328

Query: 223 HIMTTLIDMYARFGCV--------------------MYAGFV-----------FSQMAVK 251
            +  TLI +Y ++G V                    + +G+V           F+QM  K
Sbjct: 329 SVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEK 388

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           N+++W+ MI+  A+NG   +AL+LF +M ++ ++  PN       + AC+ L ALE G+ 
Sbjct: 389 NLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYE--PNDYAFAGAITACSVLGALENGRQ 446

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +H  I+  G DS L V +A++TMYARCG +E  + +F  M   D VSWNS+I++ G HG+
Sbjct: 447 LHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGH 506

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
           G KAI+++++M+  G+ P   +F++VL ACSHAGLVEEG   F SM + + I P  +HYA
Sbjct: 507 GVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYA 566

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
            M+DL  RA K  +A  +I+ +  E    +W +LL  CR H N++L   A+++LF+L P 
Sbjct: 567 RMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQ 626

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
           + G YVLL+++YA+   W++V R ++L+  RG++K P  S  EV+ K++ F+  D  HP+
Sbjct: 627 HDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPE 686

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
              ++  L  L+ EMK+ GY+P TK VL+D+++E KE  +  HSEKLAVAFGL+   +G 
Sbjct: 687 VLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGA 746

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           T+R+ KNLR+C DCH+  KF+SK   +EI+VRD  RFHHF+NG CSC +YW
Sbjct: 747 TVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 126/288 (43%), Gaps = 51/288 (17%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQ--MAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           TTLI  Y+  G +  A  +F++  + +++ V ++AMI  Y+       A+ELFR M    
Sbjct: 83  TTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAM--RW 140

Query: 284 HDLCPNSVTMVSVLQACAALAALE-QGKMIHGYILRRGLDSILPVVSALVTMYARC---- 338
            +  P+  T  SVL A   +   E Q   +HG +++ G++    V++AL+++Y +C    
Sbjct: 141 ANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSP 200

Query: 339 ------------------------------------GKLELGQCVFDHMDKRDVVSWNSL 362
                                               G L   + + D M ++  ++WN++
Sbjct: 201 LVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAM 260

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           IS Y  HG    A+ +F++M   GV     ++ SV+ AC+  G    GK +   + K  +
Sbjct: 261 ISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNEL 320

Query: 423 IRPSVEHY----ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
             P  +        ++ L  +  K++ A KI  ++ ++     W +LL
Sbjct: 321 -NPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKD-IITWNTLL 366



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 22/243 (9%)

Query: 55  LIQSLCKQGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           +I  L + G   QAL + +       EPN   + +   + +C+   +L +   +H+ +  
Sbjct: 396 MISGLAQNGFGEQALKLFNQMKLDGYEPN--DYAFAGAITACSVLGALENGRQLHAQIVH 453

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G D    +   +I +Y+    V+ AR +F          WN++  AL   G G + +EL
Sbjct: 454 LGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIEL 513

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTT 227
           Y +M     GI  DR T+  VL AC  S  G  L++ G     S+L  +G          
Sbjct: 514 YEQM--LKEGILPDRRTFLTVLSAC--SHAG--LVEEGNRYFNSMLENYGIAPGEDHYAR 567

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMIACYARNG---MAFEALE-LFREMIME 282
           +ID++ R G    A  V   M  +     W A++A    +G   +  EA E LF+  ++ 
Sbjct: 568 MIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFK--LIP 625

Query: 283 SHD 285
            HD
Sbjct: 626 QHD 628


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/639 (38%), Positives = 360/639 (56%), Gaps = 44/639 (6%)

Query: 24  HLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTY 83
           +L  +PSS     +L     P  ++    + L +S+    ++ Q L  + +   P  H  
Sbjct: 21  NLTIRPSSTS---ALTLCENPPQITESKHSHLTKSISNHAHMNQMLSQMIMNYIPIDHLN 77

Query: 84  ELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR 143
            + L+            +V SH    GF     L T+    Y   DS             
Sbjct: 78  LMKLID----------FSVSSH----GFAASALLFTQF---YGFIDSD------------ 108

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
               + N++ R  T + +    + +Y +M     GI  D  T+  VLK+ VA  C   L 
Sbjct: 109 ----LCNSMIRCYTDSNKHLHSVFIYTQM--WKNGIFPDSSTFPTVLKS-VAQLCRQEL- 160

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
             GK IH  +++ G+   V++ T L++MY     V  A  VF ++  +N+VSW+A+I  Y
Sbjct: 161 --GKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGY 218

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
             N M  + +++FREM +      P  VTMV VL ACA L AL QG+ I  YI    L  
Sbjct: 219 NHNRMFRKVIDVFREMQIAGAK--PVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRL 276

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            + V +AL+ MYA+CG ++  + +F  M  ++V +WN LIS Y ++G G  A+Q F  MI
Sbjct: 277 NVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMI 336

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
                P  ++F+ VL AC H GLV EG+  F SM++E  +RP +EHY CMVDLLGRA  L
Sbjct: 337 MEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFL 396

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
           +EA ++I+ + ++P P +W  LLG+CRIH N++L E A K+L ELEP N  NYVLLA++Y
Sbjct: 397 DEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLY 456

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           A    WD+V  V+ +++ R ++KVPG S IE+   +Y FV  +   P FE+++ LL +++
Sbjct: 457 ARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMN 516

Query: 564 AEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCE 623
            ++K  GYV  T +  YD++ EEKE  ++ HSEKLA+AFGL+ +  G T+RI KNLR+C+
Sbjct: 517 KKLKLAGYVADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQ 576

Query: 624 DCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           DCH F K +SK   ++I VRD NRFHHF  G CSC DYW
Sbjct: 577 DCHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/581 (39%), Positives = 355/581 (61%), Gaps = 15/581 (2%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS---VDDARHVFDKTR 142
           LL  CT   SL++   + ++        D  ++TKLIN  +   +   +D A H+FD+  
Sbjct: 35  LLSKCT---SLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQIL 91

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
            + I ++N + R    +        L+  +    +G+  D +T++ +LKAC +S      
Sbjct: 92  DKDIILFNIMARGYARSNSPYLAFSLFGEL--LCSGLLPDDYTFSSLLKACASSKA---- 145

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L+ G  +H   ++ G N  ++I  TLI+MYA    +  A  VF +M    +VS++A+I  
Sbjct: 146 LREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITG 205

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           YAR+    EAL LFRE+  ++ ++ P  VTM+SV+ +CA L AL+ GK IH Y+ ++G D
Sbjct: 206 YARSSQPNEALSLFREL--QASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFD 263

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             + V +AL+ M+A+CG L     +F+ M  RD  +W+++I ++  HG G KAI +F+EM
Sbjct: 264 KYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEM 323

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              GV P  I+F+ +L ACSHAGLVE+G+  F SM K + I P ++HY CMVDLLGRA  
Sbjct: 324 KREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGH 383

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           L+EA   ++ L I+  P +W +LL +C  H NVE+A+R  +R+FEL+  + G+YV+L+++
Sbjct: 384 LDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNL 443

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           YA    W++V  +++L++ RG+ KVPG S +EV   ++ F S D  H    +L   L  L
Sbjct: 444 YARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDEL 503

Query: 563 SAEMKEKGYVPQTKVVLY-DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
             E+K  GYVP T +V + D++ E KE ++  HSEKLA+AFGL+NT  G TIR+ KNLR+
Sbjct: 504 MKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRI 563

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCH+  K IS    ++I++RDV RFH F +G CSCGD+W
Sbjct: 564 CGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 143/298 (47%), Gaps = 16/298 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL +C    +L + + +H      G + + ++   LIN+Y+  + ++ AR V
Sbjct: 128 PDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGV 187

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+  +  I  +NA+      + +  E L L+R +    + I     T   V+ +C    
Sbjct: 188 FDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQ--ASNIEPTDVTMLSVIMSCAL-- 243

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  GK IH  V + G++  V + T LIDM+A+ G +  A  +F  M V++  +WS
Sbjct: 244 --LGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWS 301

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI  +A +G   +A+ +F EM  E   + P+ +T + +L AC+    +EQG+   GY  
Sbjct: 302 AMIVAFATHGDGLKAISMFEEMKREG--VRPDEITFLGLLYACSHAGLVEQGR---GYFY 356

Query: 318 RR----GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
                 G+   +     +V +  R G L+      D ++ K   + W +L+S+   HG
Sbjct: 357 SMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHG 414


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/658 (36%), Positives = 373/658 (56%), Gaps = 52/658 (7%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN-----PTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N +I+S  K G  + AL++ S   N     P   T   +L  C    + S     H    
Sbjct: 197 NSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAV 256

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            +   Q+ F+   L+++Y+ F  +D+A  VF     + +  WNA+    +  GR E+ + 
Sbjct: 257 TSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVR 316

Query: 168 LYRRMN---------------------GTG------------TGIRSDRFTYTYVLKACV 194
           L+ +M                      G G            +GI+ +  T   VL  C 
Sbjct: 317 LFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCA 376

Query: 195 ASSCGFSLLKHGKEIHASVLRH-------GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
           +       L HGKEIH   +++       G+     ++  LIDMYA+   V  A  +F  
Sbjct: 377 S----VGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDS 432

Query: 248 MAVK--NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
           ++ K  +VV+W+ MI  Y+++G A +ALEL  EM  E     PN+ T+   L ACA+LAA
Sbjct: 433 LSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAA 492

Query: 306 LEQGKMIHGYILRRGLDSI-LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           L  GK IH Y LR   +++ L V + L+ MYA+CG +   + VFD+M +++ V+W SL++
Sbjct: 493 LSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMT 552

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
            YG+HGYG +A+ IF+EM   G     ++ + VL ACSH+G++++G   F  M+ +  + 
Sbjct: 553 GYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVS 612

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484
           P  EHYAC+VDLLGRA +L  A ++IE++ +EP P VW +LL  CRIH  VEL E A+K+
Sbjct: 613 PGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKK 672

Query: 485 LFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS 544
           + EL   N G+Y LL+++YA A  W +V R++ L+  +G++K PG S +E  +   +F  
Sbjct: 673 ITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFV 732

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604
            D+ HP  ++++ +L +    +K+ GYVP+T   L+D+D EEK+ ++  HSEKLA+A+G+
Sbjct: 733 GDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGI 792

Query: 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + T +G  IRITKNLR+C DCH+   ++S+  + EI++RD +RFHHF+NG+CSC  YW
Sbjct: 793 LTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/507 (27%), Positives = 230/507 (45%), Gaps = 63/507 (12%)

Query: 20  NSIAHLPPKPSSVCC---CVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVL---- 72
           N  +HL     S+ C    VSL     P+     + N LI+S    G   + L       
Sbjct: 60  NLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMH 119

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
           S+   P  +T+  +  +C   +S+    + H+     GF  + F+   L+ +YS   S+ 
Sbjct: 120 SLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLS 179

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           DAR VFD+     +  WN++  +    G+ +  LE++ +M     G R D  T   VL  
Sbjct: 180 DARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNE-FGFRPDDITLVNVLPP 238

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
           C  +S G   L  GK+ H   +       + +   L+DMYA+FG +  A  VFS M VK+
Sbjct: 239 C--ASVGTRSL--GKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKD 294

Query: 253 VVSWSAMIA-----------------------------------CYARNGMAFEALELFR 277
           VVSW+AM+A                                    YA+ G+ +EAL + R
Sbjct: 295 VVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCR 354

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-------SILPVVSA 330
           +M+  S  + PN VT++SVL  CA++ AL  GK IH Y ++  +D           V++ 
Sbjct: 355 QML--SSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQ 412

Query: 331 LVTMYARCGKLELGQCVFDHMD--KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           L+ MYA+C K+++ + +FD +   +RDVV+W  +I  Y  HG   KA+++  EM      
Sbjct: 413 LIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ 472

Query: 389 PSPISFV--SVLGACSHAGLVEEGKMLFE-SMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
             P +F     L AC+    +  GK +   ++R +    P      C++D+  +   + +
Sbjct: 473 TRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGDIGD 531

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            A+++ D  +E     W SL+    +H
Sbjct: 532 -ARLVFDNMMEKNEVTWTSLMTGYGMH 557



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 175/390 (44%), Gaps = 61/390 (15%)

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +Y WN+L R+    GR  + L  +  M+        D +T+ +V KAC       S ++ 
Sbjct: 92  VYHWNSLIRSYGNNGRANKCLSSFCLMHSLSW--TPDNYTFPFVFKACGE----ISSVRC 145

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           G   HA     G+   V +   L+ MY+R G +  A  VF +M V +VVSW+++I  YA+
Sbjct: 146 GDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAK 205

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G    ALE+F +M  E     P+ +T+V+VL  CA++     GK  HG+ +   +   +
Sbjct: 206 LGKPKMALEMFSKMTNE-FGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNM 264

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL----------------------- 362
            V + LV MYA+ G ++    VF +M  +DVVSWN++                       
Sbjct: 265 FVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEE 324

Query: 363 ------------ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
                       IS Y   G G +A+ + ++M+  G+ P+ ++ +SVL  C+  G +  G
Sbjct: 325 KIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384

Query: 411 KMLF-------ESMRK-----EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
           K +          +RK     E+M+         ++D+  +  K++ A  + + L  +  
Sbjct: 385 KEIHCYAIKYPMDLRKNGHGDENMVINQ------LIDMYAKCKKVDIARAMFDSLSPKER 438

Query: 459 PKV-WGSLLGSCRIHCNVELAERASKRLFE 487
             V W  ++G    H +   A      +FE
Sbjct: 439 DVVTWTVMIGGYSQHGDANKALELLSEMFE 468



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 4/152 (2%)

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD--VVSWNSLI 363
           + Q K+IH  +L  G+ + L + S L++ Y   G L     +       D  V  WNSLI
Sbjct: 41  ISQVKLIHQKLLSFGILT-LNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLI 99

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
            SYG +G   K +  F  M     +P   +F  V  AC     V  G     ++ +    
Sbjct: 100 RSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDS-SHALSRVTGF 158

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
             +V     +V +  R   L +A K+ +++ +
Sbjct: 159 MSNVFVGNALVAMYSRCGSLSDARKVFDEMPV 190


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/628 (37%), Positives = 368/628 (58%), Gaps = 43/628 (6%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           L+  L ++S+   P  +T+  LL SC       +   +H H+   GFD D ++ T LI++
Sbjct: 74  LKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISM 133

Query: 125 YSHFDSVDDARHVFDKTRRRTI---------YV----------------------WNALF 153
           Y+    ++DAR VFD +  R +         YV                      WNA+ 
Sbjct: 134 YAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMI 193

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                 G  +E LEL++ M    T +R D  T   V+ AC  S      ++ G+ +H+ +
Sbjct: 194 SGYVETGNYKEALELFKEMMMM-TNVRPDESTMVTVVSACAQSDS----IELGRHVHSWI 248

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
             HG+   + I+  LID+Y++FG V  A  +F  +  K+V+SW+ +I  Y    +  EAL
Sbjct: 249 NDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEAL 308

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI---LRRGLDSILPVVSA 330
            LF+EM+       PN VTM+S+L ACA L A++ G+ IH YI   L+  + ++  + ++
Sbjct: 309 LLFQEMLRSGE--TPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTS 366

Query: 331 LVTMYARCGKLELGQCVFDH-MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           L+ MYA+CG ++  Q VFD  M  R + +WN++IS + +HG    A  IF  M  +G+ P
Sbjct: 367 LIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEP 426

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
             I+FV +L ACSH+G+++ G+ +F SM + + I P +EHY CM+DLLG +   +EA ++
Sbjct: 427 DDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEM 486

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
           I  + +EP   +W SLL +C+IH N+EL E  +K+L ++EP N+G+YVLL+++YAAA  W
Sbjct: 487 INTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRW 546

Query: 510 DEVKRVKRLLEARGL-QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKE 568
           +EV +++ LL  +G+ +KVPG S IE+   ++ F+  D+ HPQ  +++ +L  +   ++E
Sbjct: 547 NEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEE 606

Query: 569 KGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSF 628
            G+VP T  VL +++ E +E  +  HSEKLA+AFGLI+T  G  + I KNLR+C++CH  
Sbjct: 607 AGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEA 666

Query: 629 TKFISKFANKEILVRDVNRFHHFRNGVC 656
           TK ISK   +EI+ RD  RF HFR+GVC
Sbjct: 667 TKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 233/465 (50%), Gaps = 47/465 (10%)

Query: 102 VHSHLTDNGFDQDPFLVTKLIN---VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           +H+ +   G     + ++KL+    V  HFD    A  VFD  +   + +WN +FR   L
Sbjct: 7   IHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHAL 66

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +      L+LY  M     G+  D +T+ ++LK+C  S     + K G++IH  VL+ G+
Sbjct: 67  SSDPVSALKLYLVM--ISLGLLPDSYTFPFLLKSCAKS----KIRKEGQQIHGHVLKLGF 120

Query: 219 NGIVHIMTTLIDMYARFG--------------------CVMYAGFV-----------FSQ 247
           +  +++ T+LI MYA+ G                      + AG+V           F +
Sbjct: 121 DLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDE 180

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           +  K+VVSW+AMI+ Y   G   EALELF+EM+M + ++ P+  TMV+V+ ACA   ++E
Sbjct: 181 IPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMT-NVRPDESTMVTVVSACAQSDSIE 239

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+ +H +I   G  S L +V+AL+ +Y++ G++E    +FD +  +DV+SWN+LI  Y 
Sbjct: 240 LGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYT 299

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK--EHMIRP 425
                 +A+ +F+EM+  G +P+ ++ +S+L AC+H G ++ G+ +   + K  + ++  
Sbjct: 300 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTN 359

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH--CNVELAERASK 483
                  ++D+  +   ++ A ++ +          W +++    +H   N      +  
Sbjct: 360 VSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRM 419

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           R+  +EP +   +V L    + + M D  + + R +  RG +  P
Sbjct: 420 RMNGIEPDDI-TFVGLLSACSHSGMLDLGRNIFRSM-TRGYEITP 462


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/581 (38%), Positives = 348/581 (59%), Gaps = 27/581 (4%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVY-----SHFDSV--------------DDARHVFDKT 141
           ++H+    +G   D F    L+N+Y     S+ DS               +  R VFD+ 
Sbjct: 71  SLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEM 130

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             R +  WN L       GR  E L   R+M     G R D FT + VL   + + C  +
Sbjct: 131 IERDVVSWNTLVLGCAEEGRHHEALGFVRKM--CREGFRPDSFTLSTVLP--IFAEC--A 184

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            +K G E+H    R+G++  V + ++LIDMYA      Y+  VF  + V++ + W++++A
Sbjct: 185 DVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLA 244

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
             A+NG   EAL +FR M+     + P  VT  S++  C  LA+L  GK +H Y++  G 
Sbjct: 245 GCAQNGSVEEALGIFRRMLQAG--VRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGF 302

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           +  + + S+L+ MY +CG++ +  C+FD M   DVVSW ++I  Y +HG   +A+ +F+ 
Sbjct: 303 EDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFER 362

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M      P+ I+F++VL ACSHAGLV++G   F+SM   + I P++EH+A + D LGRA 
Sbjct: 363 MELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAG 422

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
           +L+EA   I  ++I+P   VW +LL +CR+H N  LAE  +K++ ELEP + G++V+L++
Sbjct: 423 ELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSN 482

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +Y+A+  W+E   ++  +  +G++K P  S IEVK K++ FV+ D  HP ++++   L  
Sbjct: 483 MYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNA 542

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
            S +M  +G+VP T+ V  D++ E K  ++ GHSEKLA+ FG+I+T  G  IR+ KNLR+
Sbjct: 543 FSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRV 602

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCH+ TKFISK A++EI+VRD NRFHHF++G CSCGD+W
Sbjct: 603 CIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 17/219 (7%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+    + G++ +AL +    L     P   T+  L+  C +  SL     +H+++  
Sbjct: 240 NSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIC 299

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF+ + F+ + LI++Y     +  A  +FDK     +  W A+     L G   E L L
Sbjct: 300 GGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVL 359

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM--- 225
           + RM       + +  T+  VL AC  S  G  L+  G +   S+  H   GIV  +   
Sbjct: 360 FERMELGNA--KPNHITFLAVLTAC--SHAG--LVDKGWKYFKSMSNH--YGIVPTLEHF 411

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMI-AC 262
             L D   R G +  A    S+M +K   S WS ++ AC
Sbjct: 412 AALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRAC 450



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 104/251 (41%), Gaps = 21/251 (8%)

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+  I   A  G   +A+ LF  M   +        ++ + L++CAAL     G  +H  
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 316 ILRRGLDSILPVVSALVTMYAR--CGKL-----------------ELGQCVFDHMDKRDV 356
            +R G  +     +AL+ +Y +  C  L                 E  + VFD M +RDV
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           VSWN+L+      G   +A+   ++M   G  P   +  +VL   +    V+ G +    
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRG-LEVHG 194

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE 476
               +     V   + ++D+     + + + K+ ++L +     +W SLL  C  + +VE
Sbjct: 195 FAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGCAQNGSVE 253

Query: 477 LAERASKRLFE 487
            A    +R+ +
Sbjct: 254 EALGIFRRMLQ 264


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/617 (38%), Positives = 365/617 (59%), Gaps = 18/617 (2%)

Query: 53  NELIQSLCKQGNLRQALDV-LSIEPNPTQ---HTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI          + LD+ LSI  +       T+ L+L +CT  +S    +++HS +  
Sbjct: 80  NSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVK 139

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF+ D   +T L+++YS    ++DA  +FD+   R++  W ALF   T +GR  E ++L
Sbjct: 140 CGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDL 199

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASS---CGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           +++M     G++ D +    VL ACV       G  ++K+ +E+         N  V   
Sbjct: 200 FKKM--VEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQ-----KNSFVR-- 250

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           TTL+++YA+ G +  A  VF  M  K++V+WS MI  YA N    E +ELF +M+ E  +
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQE--N 308

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           L P+  ++V  L +CA+L AL+ G+     I R    + L + +AL+ MYA+CG +  G 
Sbjct: 309 LKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGF 368

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VF  M ++D+V  N+ IS    +G+   +  +F +    G+SP   +F+ +L  C HAG
Sbjct: 369 EVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAG 428

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           L+++G   F ++   + ++ +VEHY CMVDL GRA  L++A ++I D+ + P   VWG+L
Sbjct: 429 LIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGAL 488

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           L  CR+  + +LAE   K L  LEP NAGNYV L+++Y+    WDE   V+ ++  +G++
Sbjct: 489 LSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMK 548

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K+PG S IE++ K++ F++ D+ HP  ++++A L +L  EM+  G+VP T+ V +D++ E
Sbjct: 549 KIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEE 608

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           EKER++  HSEKLAVA GLI+T  G+ IR+ KNLR+C DCH   K ISK   +EI+VRD 
Sbjct: 609 EKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDN 668

Query: 646 NRFHHFRNGVCSCGDYW 662
           NRFH F NG CSC DYW
Sbjct: 669 NRFHCFTNGSCSCNDYW 685



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 192/378 (50%), Gaps = 13/378 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +  Q    L+ ++CT    ++    +H  L ++    D FLV  L+     F     +  
Sbjct: 11  SKVQQIKTLISVACT----VNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYL 66

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +F  T+   I+++N+L           E L+L+  +   G  +    FT+  VLKAC  +
Sbjct: 67  LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHG--FTFPLVLKACTRA 124

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           S      K G ++H+ V++ G+N  V  MT+L+ +Y+  G +  A  +F ++  ++VV+W
Sbjct: 125 SSR----KLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTW 180

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +A+ + Y  +G   EA++LF++M+     + P+S  +V VL AC  +  L+ G+ I  Y+
Sbjct: 181 TALFSGYTTSGRHREAIDLFKKMV--EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYM 238

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
               +     V + LV +YA+CGK+E  + VFD M ++D+V+W+++I  Y  + +  + I
Sbjct: 239 EEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGI 298

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           ++F +M+   + P   S V  L +C+  G ++ G+    S+   H    ++     ++D+
Sbjct: 299 ELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGI-SLIDRHEFLTNLFMANALIDM 357

Query: 437 LGRANKLEEAAKIIEDLR 454
             +   +    ++ ++++
Sbjct: 358 YAKCGAMARGFEVFKEMK 375



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 140/277 (50%), Gaps = 7/277 (2%)

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           +K  ++ +C    + H K+IH S++ H  +    ++  L+     F    Y+  +FS   
Sbjct: 16  IKTLISVAC---TVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQ 72

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
             N+  ++++I  +  N +  E L+LF  + +  H L  +  T   VL+AC   ++ + G
Sbjct: 73  FPNIFLYNSLINGFVNNHLFHETLDLF--LSIRKHGLYLHGFTFPLVLKACTRASSRKLG 130

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
             +H  +++ G +  +  +++L+++Y+  G+L     +FD +  R VV+W +L S Y   
Sbjct: 131 IDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTS 190

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G   +AI +FK+M+  GV P     V VL AC H G ++ G+ + + M +  M + S   
Sbjct: 191 GRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVR 250

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
              +V+L  +  K+E+A  + + + +E     W +++
Sbjct: 251 -TTLVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMI 285


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/669 (35%), Positives = 371/669 (55%), Gaps = 63/669 (9%)

Query: 53  NELIQSLCKQGNLRQALDVLS-----IEPNPTQHTYELL-----LLSCTHHNSLSDALNV 102
           N ++ +  K  N R ALD+ S     +    T    +++     L +C    +L     +
Sbjct: 222 NSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEI 281

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
           HS+   NG   D F+   LI+ Y+   S+ DA +VF+    + +  WNA+    T +G+ 
Sbjct: 282 HSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKF 341

Query: 163 EEVLELYRRMN---------------------GTGT------------GIRSDRFTYTYV 189
               EL++ M                      G G             G   +  T   +
Sbjct: 342 GAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISL 401

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH------------IMTTLIDMYARFGC 237
           L AC +       L  G E HA  L+     + +            +   LIDMY++   
Sbjct: 402 LSACAS----LGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRS 457

Query: 238 VMYAGFVFSQMA--VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
              A  +F+ +    +NVV+W+ MI  YA+ G + +AL+LF EMI + + + PN+ T+  
Sbjct: 458 FKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISC 517

Query: 296 VLQACAALAALEQGKMIHGYILR--RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
           +L ACA L++L  GK IH Y+ R      S+  V + L+ MY++CG ++  + VFD M K
Sbjct: 518 ILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPK 577

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           R+ VSW S++S YG+HG G +A+ IF +M   G  P  ISF+ +L ACSH+G+V++G   
Sbjct: 578 RNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDY 637

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
           F+ MR ++ +  S +HYAC++DLL R+ +L++A K I+++ +EP   +W +LL +CR+H 
Sbjct: 638 FDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHS 697

Query: 474 NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI 533
           NVELAE A  +L  ++  N G+Y L++++YA A  W +V R+++L++  G++K PG S +
Sbjct: 698 NVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWV 757

Query: 534 EVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG 593
           + K+   SF   D  HP   ++++LL  L   +K  GYVP+T   L+D+D EEK  ++  
Sbjct: 758 QGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTE 817

Query: 594 HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
           HSEKLA+A+GL+ TS G  IRITKNLR+C DCHS   +ISK  + EI+VRD +RFHHF+N
Sbjct: 818 HSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKN 877

Query: 654 GVCSCGDYW 662
           G CSCG YW
Sbjct: 878 GSCSCGGYW 886



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 222/487 (45%), Gaps = 78/487 (16%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+++  ++G L +A+ V    L     P   T    L +C    S       H  +  
Sbjct: 118 NLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICC 177

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI---YVWNALFRALTLAGRGEEV 165
           NGF+ + F+   L+ +YS   S++DA  VFD+  R+ I     WN++  A          
Sbjct: 178 NGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTA 237

Query: 166 LELYRRMNGT----GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
           L+L+  M        T  RSD  +   +L AC +       L   KEIH+  +R+G    
Sbjct: 238 LDLFSEMTTIVHEKATNERSDIISIVNILPACAS----LKALPQTKEIHSYAIRNGTFAD 293

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM---------------------- 259
             +   LID YA+ G +  A  VF+ M  K+VVSW+AM                      
Sbjct: 294 AFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRK 353

Query: 260 -------------IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
                        IA YA+ G   EAL+ F++MI+   +  PNSVT++S+L ACA+L AL
Sbjct: 354 ENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSE--PNSVTIISLLSACASLGAL 411

Query: 307 EQGKMIHGYILRRGLDSI------------LPVVSALVTMYARCGKLELGQCVFDHMDKR 354
            QG   H Y L++ L S+            L V +AL+ MY++C   +  + +F+ + +R
Sbjct: 412 SQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRR 471

Query: 355 D--VVSWNSLISSYGVHGYGGKAIQIFKEMIY--HGVSPSPISFVSVLGACSHAGLVEEG 410
           +  VV+W  +I  Y  +G    A+++F EMI   + V+P+  +   +L AC+H   +  G
Sbjct: 472 ERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMG 531

Query: 411 KMLFESMRKEHMIRPSVEHYA-CMVDLLGRANKLEEAAKIIEDLRIEPGPK----VWGSL 465
           K +   + + H    SV   A C++D+  +   ++ A  + + +     PK     W S+
Sbjct: 532 KQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSM-----PKRNEVSWTSM 586

Query: 466 LGSCRIH 472
           +    +H
Sbjct: 587 MSGYGMH 593



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 159/336 (47%), Gaps = 48/336 (14%)

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           L T ++  Y    +  DA  V ++        WN L RA    GR +  + +  RM   G
Sbjct: 85  LGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAG 144

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
           T  + D FT  Y LKAC          + G   H  +  +G+   V +   L+ MY+R G
Sbjct: 145 T--KPDHFTLPYALKACGE----LPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSG 198

Query: 237 CVMYAGFVFSQM---AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS--- 290
            +  A  VF ++    + +V+SW++++A + +      AL+LF EM    H+   N    
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSD 258

Query: 291 -VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
            +++V++L ACA+L AL Q K IH Y +R G  +   V +AL+  YA+CG ++    VF+
Sbjct: 259 IISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFN 318

Query: 350 HMDKRDVVSWNSL-----------------------------------ISSYGVHGYGGK 374
            M+ +DVVSWN++                                   I+ Y   GYG +
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQE 378

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           A+  F++MI +G  P+ ++ +S+L AC+  G + +G
Sbjct: 379 ALDTFQQMILYGSEPNSVTIISLLSACASLGALSQG 414



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 11/196 (5%)

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
           H Y     + T ++  Y   G    A  V  ++     V W+ ++  +   G    A+ +
Sbjct: 77  HSYVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGV 136

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
              M+       P+  T+   L+AC  L +   G   HG I   G +S + V +ALV MY
Sbjct: 137 SCRMLRAGTK--PDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMY 194

Query: 336 ARCGKLELGQCVFDHMDKR---DVVSWNSLISSYGVHGYGGKAIQIFKEM--IYHGVSPS 390
           +R G LE    VFD + ++   DV+SWNS+++++        A+ +F EM  I H  + +
Sbjct: 195 SRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATN 254

Query: 391 P----ISFVSVLGACS 402
                IS V++L AC+
Sbjct: 255 ERSDIISIVNILPACA 270


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/586 (38%), Positives = 350/586 (59%), Gaps = 9/586 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L +     +L     +H +     FD    + T L+++Y+    +  AR +
Sbjct: 208 PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKI 267

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    R    W+A+      +   +E LEL+ +M      I  D    T V    V  +
Sbjct: 268 FDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQM------ILKDAMDPTPVTLGSVLRA 321

Query: 198 CG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           C   + L  G+++H  +++ G    + +  TL+ MYA+ G +  A   F +M  K+ VS+
Sbjct: 322 CAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSF 381

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           SA+++   +NG A  AL +FR M +   D  P+  TM+ VL AC+ LAAL+ G   HGY+
Sbjct: 382 SAIVSGCVQNGNAAVALSIFRMMQLSGID--PDLTTMLGVLPACSHLAALQHGFCSHGYL 439

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           + RG  +   + +AL+ MY++CGK+   + VF+ MD+ D+VSWN++I  YG+HG G +A+
Sbjct: 440 IVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEAL 499

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F +++  G+ P  I+F+ +L +CSH+GLV EG++ F++M ++  I P +EH  CMVD+
Sbjct: 500 GLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDI 559

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA  ++EA   I ++  EP  ++W +LL +CRIH N+EL E  SK++  L P + GN+
Sbjct: 560 LGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNF 619

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++Y+AA  WD+   ++   +  GL+K+PG S IE+   +++FV  D+ H Q  Q++
Sbjct: 620 VLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQIN 679

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  L  EMK  GY  +   V  D++ EEKE+I+L HSEKLA+AFG++N   G  I +T
Sbjct: 680 RKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVT 739

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+  KF++    +EI VRD NRFHHF+NG C+CGD+W
Sbjct: 740 KNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 199/364 (54%), Gaps = 15/364 (4%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N++I++    G    A+D+    L +   P ++TY  +L +C+   ++ D + +HSH   
Sbjct: 78  NQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKM 137

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G + D F+ T L++ Y+    + +A+ +F     R +  WNA+    +L G  ++ ++L
Sbjct: 138 FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQL 197

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
             +M     GI  +  T   VL     +      L HGK +H   +R  ++  V + T L
Sbjct: 198 IMQMQ--EEGICPNSSTIVGVLPTVGEAKA----LGHGKALHGYCVRRSFDNGVVVGTGL 251

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +DMYA+  C++YA  +F  M V+N VSWSAMI  Y  +    EALELF +MI++   + P
Sbjct: 252 LDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDA-MDP 310

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV--SALVTMYARCGKLELGQC 346
             VT+ SVL+ACA L  L +G+ +H YI++ G  S+L ++  + L++MYA+CG ++    
Sbjct: 311 TPVTLGSVLRACAKLTDLSRGRKLHCYIIKLG--SVLDILLGNTLLSMYAKCGVIDDAIR 368

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
            FD M+ +D VS+++++S    +G    A+ IF+ M   G+ P   + + VL ACSH   
Sbjct: 369 FFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAA 428

Query: 407 VEEG 410
           ++ G
Sbjct: 429 LQHG 432



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 184/336 (54%), Gaps = 9/336 (2%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
            ++ Y  LL +C    SL++A  +H H   N  + D  ++ KL  +Y   + V  AR +F
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           D+    ++ +WN + RA    G  +  ++LY  M     G+R +++TY +VLKAC     
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSM--LHLGVRPNKYTYPFVLKAC----S 120

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
           G   ++ G EIH+     G    V + T L+D YA+ G ++ A  +FS M+ ++VV+W+A
Sbjct: 121 GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNA 180

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           MIA  +  G+  +A++L   M M+   +CPNS T+V VL       AL  GK +HGY +R
Sbjct: 181 MIAGCSLYGLCDDAVQLI--MQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVR 238

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
           R  D+ + V + L+ MYA+C  L   + +FD M  R+ VSW+++I  Y       +A+++
Sbjct: 239 RSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALEL 298

Query: 379 FKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKML 413
           F +MI    + P+P++  SVL AC+    +  G+ L
Sbjct: 299 FDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKL 334


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/635 (36%), Positives = 357/635 (56%), Gaps = 28/635 (4%)

Query: 54  ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           E I  LC Q  LR+A+ +L     P   TY  L+  C+   +L +   VH H+  +GF  
Sbjct: 61  EAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVP 120

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM- 172
              +  +++ +Y+   S+ DAR VFD+   R +  WN +       G  EE   L+  M 
Sbjct: 121 GIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMP 180

Query: 173 -------NGTGTG-IRSDRFTYTYVLKACV-----------------ASSCGFSLLKHGK 207
                      TG ++ D+     VL + +                 A++     ++ GK
Sbjct: 181 ERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGK 240

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
           EIH  ++R G +    + ++L+DMY + GC+  A  +F ++  K+VVSW++MI  Y ++ 
Sbjct: 241 EIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSS 300

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
              E   LF E+I       PN  T   VL ACA L   E G+ +HGY+ R G D     
Sbjct: 301 RWREGFSLFSELIGSCER--PNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFA 358

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
            S+L+ MY +CG +E  + V D   K D+VS  SLI  Y  +G   +A++ F  ++  G 
Sbjct: 359 SSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGT 418

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
            P  ++FV+VL AC+HAGLVE+G   F S+ ++H +  + +HY C+VDLL R+ + E+  
Sbjct: 419 KPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLK 478

Query: 448 KIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507
            ++ ++ ++P   +W S+LG C  + N++LAE A++ LF++EP N   YV +A++YAAA 
Sbjct: 479 SVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAG 538

Query: 508 MWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK 567
            W+E  ++++ ++  G+ K PG S  E+KRK + F++ D  HP + Q+   L  L  +MK
Sbjct: 539 KWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFLGELRKKMK 598

Query: 568 EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHS 627
           E+GYVP T +VL+D++ E+KE  ++ HSEKLAVAF +++T +G  I++ KNLR C DCHS
Sbjct: 599 EEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHS 658

Query: 628 FTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             KFISK   ++I +RD  RFH F NG CSC DYW
Sbjct: 659 AIKFISKITKRKITIRDSTRFHCFENGQCSCRDYW 693


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/614 (38%), Positives = 352/614 (57%), Gaps = 48/614 (7%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+S    G  R+ + V     S    P  +T+  +L +C+   ++     +H   T 
Sbjct: 110 NVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATK 169

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G     F+   L+++Y     + +AR V D+  RR +  WN+L        R ++ LE+
Sbjct: 170 VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEV 229

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            R M                              + H     AS+L    N         
Sbjct: 230 CREMESVK--------------------------ISHDAGTMASLLPAVSNTTTE----- 258

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
                    VMY   +F +M  K++VSW+ MI  Y +N M  EA+EL+  M  E+    P
Sbjct: 259 --------NVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGM--EADGFEP 308

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           ++V++ SVL AC   +AL  GK IHGYI R+ L   L + +AL+ MYA+CG L+  + VF
Sbjct: 309 DAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVF 368

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           ++M  RDVVSW ++IS+YG  G G  A+ +F +M   G+ P  I+FV+ L ACSHAGL+E
Sbjct: 369 ENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLE 428

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG+  F+ M   + I P +EH ACMVDLLGRA K++EA K I+++ +EP  +VWG+LLG+
Sbjct: 429 EGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGA 488

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CR+H N ++   A+ +LF+L P  +G YVLL+++YA A  W+EV  ++ +++++GL+K P
Sbjct: 489 CRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNP 548

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +EV R +++F+  D  HPQ  +++  L  L  +MKE GYVP ++  L+D++ E+KE
Sbjct: 549 GASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKE 608

Query: 589 RIVLGHSEKLAVAFGLINTSKGET---IRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
             +  HSEKLA+ F L+NT + ++   IRITKNLR+C DCH   K IS+  ++EI++RD 
Sbjct: 609 THLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDT 668

Query: 646 NRFHHFRNGVCSCG 659
           NRFH FR GVCSC 
Sbjct: 669 NRFHVFRFGVCSCA 682



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 102/201 (50%), Gaps = 2/201 (0%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           LK  + +H+ ++         +   L+  YA    V  A  VF ++  +NV+  + MI  
Sbjct: 56  LKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRS 115

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y  NG   E +++F  M   S  + P+  T   VL+AC+    +  GK IHG   + GL 
Sbjct: 116 YVNNGFYREGIQVFGTMC--SCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLS 173

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
           S L V + LV+MY +CG L   + V D M +RDVVSWNSL++ Y  +     A+++ +EM
Sbjct: 174 STLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREM 233

Query: 383 IYHGVSPSPISFVSVLGACSH 403
               +S    +  S+L A S+
Sbjct: 234 ESVKISHDAGTMASLLPAVSN 254



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 150/342 (43%), Gaps = 22/342 (6%)

Query: 38  LNSSTTPTSLSSR--NKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS 95
           ++ S T   LSS     N L+    K G L +A  VL         ++  L+     +  
Sbjct: 163 IHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQR 222

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF--DSVDDARHVFDKTRRRTIYVWNALF 153
             DAL V   +       D   +  L+   S+   ++V   + +F K  ++++  WN + 
Sbjct: 223 FDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMI 282

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                     E +ELY  M   G     D  + T VL AC  +S     L  GK+IH  +
Sbjct: 283 GVYMKNAMPVEAVELYSGMEADG--FEPDAVSITSVLPACGDTSA----LSLGKKIHGYI 336

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
            R      + +   LIDMYA+ GC+  A  VF  M  ++VVSW+AMI+ Y  +G   +A+
Sbjct: 337 ERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAV 396

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK-----MIHGYILRRGLDSILPVV 328
            LF +  M+   L P+S+  V+ L AC+    LE+G+     M   Y +   L+ +    
Sbjct: 397 ALFSK--MQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHL---- 450

Query: 329 SALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
           + +V +  R GK++        M  + +   W +L+ +  VH
Sbjct: 451 ACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVH 492


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/596 (39%), Positives = 358/596 (60%), Gaps = 12/596 (2%)

Query: 69  LDVLSI-EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH 127
           LD+L   E  PT   Y   + +C    +L DA  +H+HL  + F  D FL   LI++Y  
Sbjct: 39  LDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCK 98

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG-IRSDRFTY 186
             SV DAR+VFD+ RR+ +  W +L           E + L   + G   G  + + FT+
Sbjct: 99  CRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGL---LPGMLKGRFKPNGFTF 155

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
             +LKA  A    ++    G++IHA  ++ G++  V++ + L+DMYAR G +  A  VF 
Sbjct: 156 ASLLKAAGA----YADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFD 211

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
           ++  KN VSW+A+I+ +AR G    AL  F EM+    +      T  SV  + A L AL
Sbjct: 212 KLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFE--ATHFTYSSVFSSIARLGAL 269

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
           EQGK +H ++++        V + L+ MYA+ G +   + VFD +D +D+V+WNS+++++
Sbjct: 270 EQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAF 329

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
             +G G +A+  F+EM   GV  + I+F+ +L ACSH GLV+EGK  FE M KE+ + P 
Sbjct: 330 AQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFE-MMKEYDLEPE 388

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF 486
           ++HY  +V LLGRA  L  A   I  + +EP   VWG+LL +CR+H N ++ + A+  +F
Sbjct: 389 IDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVF 448

Query: 487 ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD 546
           EL+P ++G  VLL ++YA+   WD   RV+ +++  G++K P  S +E++  ++ FV+ D
Sbjct: 449 ELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVAND 508

Query: 547 EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLIN 606
           + HPQ E+++ +   +S +++++GYVP    VL  +D +EKE  +  HSEKLA+AF LI 
Sbjct: 509 DTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIE 568

Query: 607 TSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              G TIRI KN+R+C DCHS  K+ISK   +EI+VRD NRFHHF +G CSCGDYW
Sbjct: 569 MPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/615 (39%), Positives = 353/615 (57%), Gaps = 13/615 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTH-HNSLSDALNVHSHLT 107
           N LI+ +      R A+ V +        P   T+  +L +CT   +     L++HS + 
Sbjct: 70  NTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVI 129

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
             GFD D F+ T L+ +YS    + DAR VFD+   + +  W A+      +G   E L 
Sbjct: 130 KTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALG 189

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+R +     G+R D FT   +L AC  S  G   L  G+ I   +   G  G V + T+
Sbjct: 190 LFRGL--LEMGLRPDSFTLVRILYAC--SRVG--DLASGRWIDGYMRESGSVGNVFVATS 243

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+DMYA+ G +  A  VF  M  K+VV WSA+I  YA NGM  EAL++F EM  E  ++ 
Sbjct: 244 LVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRE--NVR 301

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+   MV V  AC+ L ALE G    G +      S   + +AL+  YA+CG +   + V
Sbjct: 302 PDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEV 361

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F  M ++D V +N++IS   + G+ G A  +F +M+  G+ P   +FV +L  C+HAGLV
Sbjct: 362 FKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLV 421

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           ++G   F  M     + P++EHY CMVDL  RA  L EA  +I  + +E    VWG+LLG
Sbjct: 422 DDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLG 481

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
            CR+H + +LAE   K+L ELEP N+G+YVLL+++Y+A+  WDE ++++  L  +G+QK+
Sbjct: 482 GCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKL 541

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           PG S +EV   ++ F+  D  HP   +++  L +L  +++E GY P T+ VL+D++ EEK
Sbjct: 542 PGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEK 601

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
           E  +  HSEKLAVAF LI+T   + IR+ KNLR+C DCH   K +SK   +EI+VRD NR
Sbjct: 602 EYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNR 661

Query: 648 FHHFRNGVCSCGDYW 662
           FHHF  G CSC DYW
Sbjct: 662 FHHFTEGSCSCRDYW 676



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 159/339 (46%), Gaps = 18/339 (5%)

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           LK C A   G   L   K+ H  +LR G +   +++  L+     F    YA  VF+Q  
Sbjct: 5   LKKCFAW--GLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTP 62

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA-ALEQ 308
             N+  ++ +I     N    +A+ ++    M  H   P++ T   VL+AC  L      
Sbjct: 63  HPNIFLYNTLIRGMVSNDAFRDAVSVYAS--MRQHGFAPDNFTFPFVLKACTRLPHYFHV 120

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           G  +H  +++ G D  + V + LV +Y++ G L   + VFD + +++VVSW ++I  Y  
Sbjct: 121 GLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIE 180

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
            G  G+A+ +F+ ++  G+ P   + V +L ACS  G +  G+ +   MR+   +  +V 
Sbjct: 181 SGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSV-GNVF 239

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
               +VD+  +   +EEA ++ + + +E     W +L+   + + +  + + A    FE+
Sbjct: 240 VATSLVDMYAKCGSMEEARRVFDGM-VEKDVVCWSALI---QGYASNGMPKEALDVFFEM 295

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLL---EARGL 524
           +  N     +  D YA   ++    R+  L     ARGL
Sbjct: 296 QREN-----VRPDCYAMVGVFSACSRLGALELGNWARGL 329



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 293 MVSVLQACAA--LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           M S L+ C A  L +L Q K  H  +LR GL     +++ L+         +    VF  
Sbjct: 1   MGSELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQ 60

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS------HA 404
               ++  +N+LI     +     A+ ++  M  HG +P   +F  VL AC+      H 
Sbjct: 61  TPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHV 120

Query: 405 GL 406
           GL
Sbjct: 121 GL 122


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/582 (39%), Positives = 356/582 (61%), Gaps = 9/582 (1%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           H Y   L  C   +  S    +H  +   G   D F    L+N+Y   D + DA  +FD+
Sbjct: 39  HAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDE 98

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
              R    +  L +    + R  E +EL+ R++     +  ++FT+  VL+AC A+  G 
Sbjct: 99  MPERNTISFVTLIQGYAESVRFLEAIELFVRLHRE---VLPNQFTFASVLQAC-ATMEGL 154

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           +L   G +IH  V++ G +  V +   L+D+YA+ G +  +  +F++   +N V+W+ +I
Sbjct: 155 NL---GNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVI 211

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             + + G   +AL LF  M+   + +    VT  S L+ACA+LAALE G  IH   ++  
Sbjct: 212 VGHVQLGDGEKALRLFLNML--EYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTT 269

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
            D  + V +AL+ MYA+CG ++  + VFD M+K+D VSWN++IS Y +HG G +A++IF 
Sbjct: 270 FDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFD 329

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           +M    V P  ++FV VL AC++AGL+++G+  F SM ++H I P +EHY CMV LLGR 
Sbjct: 330 KMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRG 389

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
             L++A K+I+++  +P   VW +LLG+C IH ++EL   +++R+ E+EP +   +VLL+
Sbjct: 390 GHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLS 449

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YA A  WD V  V++ ++ +G++K PG S IE +  ++SF   D  HP+   ++ +L 
Sbjct: 450 NMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLE 509

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            L  + K+ GY+P   VVL D++ EEKER++  HSE+LA++FG+I T  G  IRI KNLR
Sbjct: 510 WLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLR 569

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH+  K ISK   +EI+VRD+NRFHHF+ G+CSCGDYW
Sbjct: 570 ICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 162/320 (50%), Gaps = 13/320 (4%)

Query: 55  LIQSLCKQGNLRQALDV---LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF 111
           LIQ   +     +A+++   L  E  P Q T+  +L +C     L+    +H H+   G 
Sbjct: 110 LIQGYAESVRFLEAIELFVRLHREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGL 169

Query: 112 DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR 171
             D F+   L++VY+    ++++  +F ++  R    WN +       G GE+ L L+  
Sbjct: 170 HSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLF-- 227

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           +N     +++   TY+  L+AC +     + L+ G +IH+  ++  ++  + +   LIDM
Sbjct: 228 LNMLEYRVQATEVTYSSALRACAS----LAALEPGLQIHSLTVKTTFDKDIVVTNALIDM 283

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           YA+ G +  A  VF  M  ++ VSW+AMI+ Y+ +G+  EAL +F +  M+  ++ P+ +
Sbjct: 284 YAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDK--MQETEVKPDKL 341

Query: 292 TMVSVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           T V VL ACA    L+QG+     +++  G++  +   + +V +  R G L+    + D 
Sbjct: 342 TFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDE 401

Query: 351 MD-KRDVVSWNSLISSYGVH 369
           +  +  V+ W +L+ +  +H
Sbjct: 402 IPFQPSVMVWRALLGACVIH 421



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 9/224 (4%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           LR  L++L      T+ TY   L +C    +L   L +HS      FD+D  +   LI++
Sbjct: 224 LRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDM 283

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
           Y+   S+ DAR VFD   ++    WNA+    ++ G G E L ++ +M    T ++ D+ 
Sbjct: 284 YAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQ--ETEVKPDKL 341

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           T+  VL AC  +     LL  G+    S+++ HG    +   T ++ +  R G +  A  
Sbjct: 342 TFVGVLSACANA----GLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVK 397

Query: 244 VFSQMAVK-NVVSWSAMI-ACYARNGMAFEALELFREMIMESHD 285
           +  ++  + +V+ W A++ AC   N +    +   R + ME  D
Sbjct: 398 LIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQD 441



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           ++R G + ++ +L +E +        NS    + LQ C       +GK +H  IL+RG  
Sbjct: 11  FSRRGFSVQSAKLTQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGC 70

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             L   + L+ MY +   L     +FD M +R+ +S+ +LI  Y       +AI++F  +
Sbjct: 71  LDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL 130

Query: 383 IYHGVSPSPISFVSVLGACS 402
            +  V P+  +F SVL AC+
Sbjct: 131 -HREVLPNQFTFASVLQACA 149


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/667 (36%), Positives = 371/667 (55%), Gaps = 59/667 (8%)

Query: 53  NELIQSLCKQGNLRQALDVLS-----IEPNPTQHTYELL-----LLSCTHHNSLSDALNV 102
           N ++ +  K  N R AL++ S     +    T    +++     L +C    +L     +
Sbjct: 222 NSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEI 281

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
           HS+   NG   D F+   LI+ Y+   S++DA  VF+    + +  WNA+    T +G  
Sbjct: 282 HSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNF 341

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYT-----YVLKAC------------------------ 193
               EL+  M      I  D  T++     Y  + C                        
Sbjct: 342 GAAFELFENMRKEN--IPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTII 399

Query: 194 -VASSCG-FSLLKHGKEIHASVLRHGYNGI------------VHIMTTLIDMYARFGCVM 239
            + S+C     L  G EIHA  L+     +            + +   LIDMY++     
Sbjct: 400 SLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFK 459

Query: 240 YAGFVFSQMA--VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
            A  +F  +    +NVV+W+ MI  YA+ G + +AL++F EMI + + + PN+ T+  +L
Sbjct: 460 AARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCIL 519

Query: 298 QACAALAALEQGKMIHGYILR--RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
            ACA LAAL  GK IH Y+ R      S+  V + L+ MY++CG ++  + VFD M KR+
Sbjct: 520 MACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRN 579

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
            VSW S++S YG+HG G +A+ IF +M   G  P  ISF+ +L ACSH+G+V++G   F+
Sbjct: 580 EVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFD 639

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
            MR+++ +  S EHYAC++DLL R  +L++A K I+++ +EP   +W +LL +CR+H NV
Sbjct: 640 IMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNV 699

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           ELAE A  +L  ++  N G+Y L++++YA A  W +V R+++L++  G++K PG S ++ 
Sbjct: 700 ELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQG 759

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
           K+   SF   D  HP   ++++LL  L   +K  GYVP+T   L+D+D EEK  ++  HS
Sbjct: 760 KKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHS 819

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EKLA+A+GL+ TS G  IRITKNLR+C DCHS   +ISK  + EI+VRD +RFHHF+NG 
Sbjct: 820 EKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGS 879

Query: 656 CSCGDYW 662
           CSCG YW
Sbjct: 880 CSCGGYW 886



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 142/487 (29%), Positives = 228/487 (46%), Gaps = 78/487 (16%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L++   K+G+L +A+ V    L     P   T    L +C    S      +H  +  
Sbjct: 118 NLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICC 177

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI---YVWNALFRALTLAGRGEEV 165
           NGF+ + F+   L+ +YS   S++DA  VFD+  R+ I     WN++  A          
Sbjct: 178 NGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTA 237

Query: 166 LELYRRMN----GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
           LEL+  M+       T  RSD  +   +L AC +       L   KEIH+  +R+G    
Sbjct: 238 LELFSEMSMIVHEKATNERSDIISIVNILPACAS----LKALPQIKEIHSYAIRNGTFAD 293

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM---------------------- 259
             +   LID YA+ G +  A  VF+ M  K+VVSW+AM                      
Sbjct: 294 AFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRK 353

Query: 260 -------------IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
                        IA YA+ G + EAL+ F++MI++  +  PNSVT++S+L ACA+L AL
Sbjct: 354 ENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSE--PNSVTIISLLSACASLGAL 411

Query: 307 EQGKMIHGYILRRGLDSI------------LPVVSALVTMYARCGKLELGQCVFDHMDKR 354
            QG  IH Y L++ L S+            L V +AL+ MY++C   +  + +FD + +R
Sbjct: 412 SQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRR 471

Query: 355 D--VVSWNSLISSYGVHGYGGKAIQIFKEMIY--HGVSPSPISFVSVLGACSHAGLVEEG 410
           +  VV+W  +I  Y  +G    A++IF EMI   + V+P+  +   +L AC+H   +  G
Sbjct: 472 ERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMG 531

Query: 411 KMLFESMRKEHMIRPSVEHYA-CMVDLLGRANKLEEAAKIIEDLRIEPGPK----VWGSL 465
           K +   + + H   PSV   A C++D+  +   ++ A  + + +     PK     W S+
Sbjct: 532 KQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSM-----PKRNEVSWTSM 586

Query: 466 LGSCRIH 472
           +    +H
Sbjct: 587 MSGYGMH 593



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 155/310 (50%), Gaps = 17/310 (5%)

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           L T ++  Y    +  DA  V ++        WN L R     G  +  + +  RM   G
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 177 TGIRSDRFTYTYVLKAC--VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
           T  + D FT  Y LKAC  + S C       G+ +H  +  +G+   V +   L+ MY+R
Sbjct: 145 T--KPDHFTLPYALKACGELPSYCC------GRALHGLICCNGFESNVFVCNALVAMYSR 196

Query: 235 FGCVMYAGFVFSQM---AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS- 290
            G +  A  VF ++    + +V+SW++++A + +      ALELF EM M  H+   N  
Sbjct: 197 CGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNER 256

Query: 291 ---VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
              +++V++L ACA+L AL Q K IH Y +R G  +   V +AL+  YA+CG +     V
Sbjct: 257 SDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKV 316

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F+ M+ +DVVSWN++++ Y   G  G A ++F+ M    +    I++ +V+   +  G  
Sbjct: 317 FNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCS 376

Query: 408 EEGKMLFESM 417
           +E    F+ M
Sbjct: 377 QEALDAFQQM 386


>gi|297745998|emb|CBI16054.3| unnamed protein product [Vitis vinifera]
          Length = 476

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/331 (69%), Positives = 262/331 (79%), Gaps = 10/331 (3%)

Query: 1   MWALQSPQTPQL--LRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSL-SSRNKNELIQ 57
           MWA Q+PQT Q   L  P+H  +   + PKP    CC++L  STT  S   S N N LIQ
Sbjct: 1   MWAFQTPQTIQQPHLPKPFHKPTA--ISPKPQ---CCLALRPSTTTRSNGDSNNNNPLIQ 55

Query: 58  SLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL 117
           SLCKQGNL QAL VLS EPNPTQHTYELL+LSCT  NSL   +++H HL  +G DQDPFL
Sbjct: 56  SLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFL 115

Query: 118 VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177
            TKLIN+YS  DS+D+AR VFDKTR+RTIYVWNALFRALTLAG G EVL+LYRRMN  G 
Sbjct: 116 ATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIG- 174

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
            + SDRFTYTYVLKACVAS    SLL +G+EIH  +LRHG+ G VHIMTTL+DMYARFGC
Sbjct: 175 -VPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGC 233

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           V+ A  VF QM VKNVVSWSAMIACY++NG   EALELFR+M++E+ DL PNSVTMVSVL
Sbjct: 234 VLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVL 293

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVV 328
           QACAALAALEQGK++HGYILRRGLDSILP++
Sbjct: 294 QACAALAALEQGKLMHGYILRRGLDSILPML 324



 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 178/427 (41%), Positives = 248/427 (58%), Gaps = 30/427 (7%)

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + +I    + G   +AL++       S +  P   T   ++ +C    +L QG  +H ++
Sbjct: 51  NPLIQSLCKQGNLNQALQVL------SQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHL 104

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           +  G D    + + L+ MY+    ++  + VFD   KR +  WN+L  +  + GYG + +
Sbjct: 105 IHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVL 164

Query: 377 QIFKEMIYHGVSPSPISFVSVLGAC----SHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +++ M   GV     ++  VL AC    +   L+  G+ +   + + H     V     
Sbjct: 165 DLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILR-HGFEGHVHIMTT 223

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
           ++D+  R   +  A+++ + + ++     W +++ +C       L      R   LE  +
Sbjct: 224 LLDMYARFGCVLNASRVFDQMPVK-NVVSWSAMI-ACYSKNGKPLEALELFRKMMLENQD 281

Query: 493 A-GNYVLLADVYAAADMWDEVKRVK----------------RLLEARGLQKVPGRSRIEV 535
              N V +  V  A      +++ K                 LLEARGLQKVPGRS IE+
Sbjct: 282 LLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPMLLEARGLQKVPGRSCIEI 341

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
           +RK+YSF+SVDEF+PQ EQLHALL+ LS EMKEKGYVP TKVVLYDLD EEKERIVLGHS
Sbjct: 342 RRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLGHS 401

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EKLA+AFGLIN+ KGETIRITKNLRLCEDCHS TKFISKFAN+EILVRDVNRFH F++GV
Sbjct: 402 EKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQDGV 461

Query: 656 CSCGDYW 662
           CSCGDYW
Sbjct: 462 CSCGDYW 468



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 138/271 (50%), Gaps = 20/271 (7%)

Query: 150 NALFRALTLAGRGEEVLE-LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           N L ++L   G   + L+ L +  N T       + TY  ++ +C   +     L  G +
Sbjct: 51  NPLIQSLCKQGNLNQALQVLSQEPNPT-------QHTYELLILSCTRQNS----LPQGID 99

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           +H  ++  G +    + T LI+MY+    +  A  VF +   + +  W+A+       G 
Sbjct: 100 LHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGY 159

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA----LEQGKMIHGYILRRGLDSI 324
             E L+L+R M      +  +  T   VL+AC A  A    L  G+ IHG+ILR G +  
Sbjct: 160 GREVLDLYRRM--NRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGH 217

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + +++ L+ MYAR G +     VFD M  ++VVSW+++I+ Y  +G   +A+++F++M+ 
Sbjct: 218 VHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMML 277

Query: 385 HG--VSPSPISFVSVLGACSHAGLVEEGKML 413
               + P+ ++ VSVL AC+    +E+GK++
Sbjct: 278 ENQDLLPNSVTMVSVLQACAALAALEQGKLM 308


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/586 (38%), Positives = 349/586 (59%), Gaps = 9/586 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L +     +L     +H +     FD    + T L+++Y+    +  AR +
Sbjct: 208 PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKI 267

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    R    W+A+      +   +E LEL+ +M      I  D    T V    V  +
Sbjct: 268 FDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQM------ILKDAMDPTPVTLGSVLRA 321

Query: 198 CG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           C   + L  G+++H  +++ G    + +  TL+ MYA+ G +  A   F  M  K+ VS+
Sbjct: 322 CAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSF 381

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           SA+++   +NG A  AL +FR M +   D  P+  TM+ VL AC+ LAAL+ G   HGY+
Sbjct: 382 SAIVSGCVQNGNAAVALSIFRMMQLSGID--PDLTTMLGVLPACSHLAALQHGFCSHGYL 439

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           + RG  +   + +AL+ MY++CGK+   + VF+ MD+ D+VSWN++I  YG+HG G +A+
Sbjct: 440 IVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEAL 499

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F +++  G+ P  I+F+ +L +CSH+GLV EG++ F++M ++  I P +EH  CMVD+
Sbjct: 500 GLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDI 559

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA  ++EA   I ++  EP  ++W +LL +CRIH N+EL E  SK++  L P + GN+
Sbjct: 560 LGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNF 619

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++Y+AA  WD+   ++   +  GL+K+PG S IE+   +++FV  D+ H Q  Q++
Sbjct: 620 VLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQIN 679

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  L  EMK  GY  +   V  D++ EEKE+I+L HSEKLA+AFG++N   G  I +T
Sbjct: 680 RKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVT 739

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+  KF++    +EI VRD NRFHHF+NG C+CGD+W
Sbjct: 740 KNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 196/362 (54%), Gaps = 11/362 (3%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N++I++    G    A+D+    L +   P ++TY  +L +C+   ++ D + +HSH   
Sbjct: 78  NQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKM 137

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G + D F+ T L++ Y+    + +A+ +F     R +  WNA+    +L G  ++ ++L
Sbjct: 138 FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQL 197

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
             +M     GI  +  T   VL     +      L HGK +H   +R  ++  V + T L
Sbjct: 198 IMQMQ--EEGICPNSSTIVGVLPTVGEAKA----LGHGKALHGYCVRRSFDNGVVVGTGL 251

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +DMYA+  C++YA  +F  M V+N VSWSAMI  Y  +    EALELF +MI++   + P
Sbjct: 252 LDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDA-MDP 310

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
             VT+ SVL+ACA L  L +G+ +H YI++ G    + + + L++MYA+CG ++     F
Sbjct: 311 TPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFF 370

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M+ +D VS+++++S    +G    A+ IF+ M   G+ P   + + VL ACSH   ++
Sbjct: 371 DXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQ 430

Query: 409 EG 410
            G
Sbjct: 431 HG 432



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 184/336 (54%), Gaps = 9/336 (2%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
            ++ Y  LL +C    SL++A  +H H   N  + D  ++ KL  +Y   + V  AR +F
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           D+    ++ +WN + RA    G  +  ++LY  M     G+R +++TY +VLKAC     
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSM--LHLGVRPNKYTYPFVLKAC----S 120

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
           G   ++ G EIH+     G    V + T L+D YA+ G ++ A  +FS M+ ++VV+W+A
Sbjct: 121 GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNA 180

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           MIA  +  G+  +A++L   M M+   +CPNS T+V VL       AL  GK +HGY +R
Sbjct: 181 MIAGCSLYGLCDDAVQLI--MQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVR 238

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
           R  D+ + V + L+ MYA+C  L   + +FD M  R+ VSW+++I  Y       +A+++
Sbjct: 239 RSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALEL 298

Query: 379 FKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKML 413
           F +MI    + P+P++  SVL AC+    +  G+ L
Sbjct: 299 FDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKL 334


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/598 (38%), Positives = 351/598 (58%), Gaps = 9/598 (1%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           +R  +D+   + +P   T+  +L +C   +       +H      GF  + F+   L+++
Sbjct: 85  IRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSM 144

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
           Y+ F  +  AR VFDK   RT+  W ++       G   E L +++ M      ++ D  
Sbjct: 145 YAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCN--VKPDWI 202

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
               V+ A          L  GK IH  V + G      I+ +L  MYA+ G V  A F 
Sbjct: 203 ALVSVMTA----YTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFF 258

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F++M   N++ W+AMI+ YA NG   EA++LFREMI  + ++  +S+TM S + A A + 
Sbjct: 259 FNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMI--TKNIRVDSITMRSAVLASAQVG 316

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           +LE  + + GYI +        V + L+ MYA+CG + L +CVFD +  +DVV W+ +I 
Sbjct: 317 SLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIM 376

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
            YG+HG+G +AI ++ EM   GV P+  +F+ +L AC ++GLV+EG  LF  M  +H I 
Sbjct: 377 GYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIE 435

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484
           P  +HY+C+VDLLGRA  L +A   I  + I+PG  VWG+LL +C+IH  V L E A+++
Sbjct: 436 PHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQ 495

Query: 485 LFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS 544
           LF L+P N G+YV L+++YA+A +W  V  V+ ++  +GL K  G S IE+   + +F  
Sbjct: 496 LFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQV 555

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604
            D  HP+ +++   L  L   +K  GYVP  + VL+DL+ EE E  +  HSE+LAVA+G+
Sbjct: 556 GDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGI 615

Query: 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I+T+ G T+RITKNLR C +CHS  K ISK  ++EI++RD  RFHHF++GVCSCGD+W
Sbjct: 616 ISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 176/313 (56%), Gaps = 8/313 (2%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            V+  L  +G  +  FL+ K IN   HF  V+ A   F +     I +WNA+ +  T   
Sbjct: 20  QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 79

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
             +  + +Y  M+   + +  + FT+ YVLKAC     G S+   GK+IH    ++G+  
Sbjct: 80  IVDAPIRMY--MDMQISQVHPNCFTFLYVLKAC----GGTSVEGIGKQIHGQTFKYGFGS 133

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            V +  +L+ MYA+FG + YA  VF ++  + VVSW+++I+ Y +NG   EAL +F+E  
Sbjct: 134 NVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKE-- 191

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           M   ++ P+ + +VSV+ A   +  L QGK IHG + + GL+    +V +L TMYA+ G 
Sbjct: 192 MRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGL 251

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +E+ +  F+ M+K +++ WN++IS Y  +GYG +AI++F+EMI   +    I+  S + A
Sbjct: 252 VEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLA 311

Query: 401 CSHAGLVEEGKML 413
            +  G +E  + L
Sbjct: 312 SAQVGSLELARWL 324



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 117/217 (53%), Gaps = 2/217 (0%)

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
            SS  F LLKH  +++  ++  G +    +M   I+    FG V YA   F +++  +++
Sbjct: 7   GSSWMFMLLKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDIL 66

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
            W+A+I  Y +  +    + ++  M M+   + PN  T + VL+AC   +    GK IHG
Sbjct: 67  LWNAIIKGYTQKNIVDAPIRMY--MDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHG 124

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
              + G  S + V ++LV+MYA+ G++   + VFD +  R VVSW S+IS Y  +G   +
Sbjct: 125 QTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPME 184

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           A+ +FKEM    V P  I+ VSV+ A ++   + +GK
Sbjct: 185 ALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGK 221


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/620 (38%), Positives = 344/620 (55%), Gaps = 41/620 (6%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           +EPNP   T   ++ +C     L     V S++++ G +    +V  L+++Y     +  
Sbjct: 227 VEPNPV--TMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICA 284

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR +FD+   + + ++N +           +VL +   M     G R D+ T    + AC
Sbjct: 285 ARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEM--LQKGPRPDKVTMLSTIAAC 342

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                    L  GK  HA VLR+G  G  +I   +IDMY + G    A  VF  M  K V
Sbjct: 343 AQ----LGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTV 398

Query: 254 VSWSAMIACYARNG-------------------------------MAFEALELFREMIME 282
           V+W+++IA   R+G                               M  EA+ELFREM  +
Sbjct: 399 VTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREM--Q 456

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
           +  +  + VTMV +  AC  L AL+  K +  YI +  +   L + +ALV M++RCG   
Sbjct: 457 NQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPS 516

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
               VF  M+KRDV +W + I    + G    AI++F EM+   V P  + FV++L ACS
Sbjct: 517 SAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACS 576

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
           H G V++G+ LF SM K H IRP + HY CMVDLLGRA  LEEA  +I+ + IEP   VW
Sbjct: 577 HGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVW 636

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
           GSLL +CR H NVELA  A+++L +L P   G +VLL+++YA+A  W +V RV+  ++ +
Sbjct: 637 GSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEK 696

Query: 523 GLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
           G+QKVPG S IEV+  ++ F S DE H +   +  +L  ++  + E GYVP T  VL D+
Sbjct: 697 GVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDV 756

Query: 583 DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILV 642
           D +EKE ++  HSEKLA+A+GLI T +G  IR+ KNLR+C DCHSF K +SK  N+EI V
Sbjct: 757 DEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREITV 816

Query: 643 RDVNRFHHFRNGVCSCGDYW 662
           RD NR+H F+ G CSC DYW
Sbjct: 817 RDNNRYHFFKEGFCSCRDYW 836



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 229/469 (48%), Gaps = 39/469 (8%)

Query: 75  EPNP-TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF--DQDPFLVTKLINV---YSHF 128
           E NP T+++   LL++C    +L +   +H  +   G    +    + KLI         
Sbjct: 19  EANPITRNSSSKLLVNC---KTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTL 75

Query: 129 DSVDDARHVF--DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
           +S+D AR+ F  D     +++++N L R    AG G++ + LY +M     GI  D++T+
Sbjct: 76  ESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQM--LVMGIVPDKYTF 133

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
            ++L AC         L  G ++H +VL+ G  G + +  +LI  YA  G V     +F 
Sbjct: 134 PFLLSACSK----ILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFD 189

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
            M  +NVVSW+++I  Y+   ++ EA+ LF +  M    + PN VTMV V+ ACA L  L
Sbjct: 190 GMLERNVVSWTSLINGYSGRDLSKEAVSLFFQ--MGEAGVEPNPVTMVCVISACAKLKDL 247

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
           E GK +  YI   G++    +V+ALV MY +CG +   + +FD    +++V +N+++S+Y
Sbjct: 248 ELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNY 307

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
             H +    + I  EM+  G  P  ++ +S + AC+  G +  GK         +++R  
Sbjct: 308 VHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGK-----SSHAYVLRNG 362

Query: 427 VEHY----ACMVDLLGRANKLEEAAKIIEDLRIEPGPKV--WGSLLGSCRIHCNVELAER 480
           +E +      ++D+  +  K E A K+ E +   P   V  W SL+       ++ELA R
Sbjct: 363 LEGWDNISNAIIDMYMKCGKREAACKVFEHM---PNKTVVTWNSLIAGLVRDGDMELAWR 419

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
               + E +     ++  +        M++E   + R ++ +G   +PG
Sbjct: 420 IFDEMLERDLV---SWNTMIGALVQVSMFEEAIELFREMQNQG---IPG 462



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 143/331 (43%), Gaps = 45/331 (13%)

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
           ++L   P P + T    + +C     LS   + H+++  NG +    +   +I++Y    
Sbjct: 322 EMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCG 381

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRG--------------------------- 162
             + A  VF+    +T+  WN+L   L   G                             
Sbjct: 382 KREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQ 441

Query: 163 ----EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF-SLLKHGKEIHASVLRHG 217
               EE +EL+R M     GI  DR T        +AS+CG+   L   K +   + ++ 
Sbjct: 442 VSMFEEAIELFREMQ--NQGIPGDRVTMV-----GIASACGYLGALDLAKWVCTYIEKND 494

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
            +  + + T L+DM++R G    A  VF +M  ++V +W+A I   A  G    A+ELF 
Sbjct: 495 IHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFN 554

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYA 336
           EM+     + P+ V  V++L AC+   +++QG+ +   + +  G+   +     +V +  
Sbjct: 555 EML--EQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLG 612

Query: 337 RCGKLELGQCVFDHM--DKRDVVSWNSLISS 365
           R G LE    +   M  +  DVV W SL+++
Sbjct: 613 RAGLLEEAVDLIQSMPIEPNDVV-WGSLLAA 642


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/598 (38%), Positives = 351/598 (58%), Gaps = 9/598 (1%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           +R  +D+   + +P   T+  +L +C   +       +H      GF  + F+   L+++
Sbjct: 70  IRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSM 129

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
           Y+ F  +  AR VFDK   RT+  W ++       G   E L +++ M      ++ D  
Sbjct: 130 YAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCN--VKPDWI 187

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
               V+ A          L  GK IH  V + G      I+ +L  MYA+ G V  A F 
Sbjct: 188 ALVSVMTA----YTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFF 243

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F++M   N++ W+AMI+ YA NG   EA++LFREMI  + ++  +S+TM S + A A + 
Sbjct: 244 FNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMI--TKNIRVDSITMRSAVLASAQVG 301

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           +LE  + + GYI +        V + L+ MYA+CG + L +CVFD +  +DVV W+ +I 
Sbjct: 302 SLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIM 361

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
            YG+HG+G +AI ++ EM   GV P+  +F+ +L AC ++GLV+EG  LF  M  +H I 
Sbjct: 362 GYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIE 420

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484
           P  +HY+C+VDLLGRA  L +A   I  + I+PG  VWG+LL +C+IH  V L E A+++
Sbjct: 421 PHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQ 480

Query: 485 LFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS 544
           LF L+P N G+YV L+++YA+A +W  V  V+ ++  +GL K  G S IE+   + +F  
Sbjct: 481 LFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQV 540

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604
            D  HP+ +++   L  L   +K  GYVP  + VL+DL+ EE E  +  HSE+LAVA+G+
Sbjct: 541 GDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGI 600

Query: 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I+T+ G T+RITKNLR C +CHS  K ISK  ++EI++RD  RFHHF++GVCSCGD+W
Sbjct: 601 ISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 176/313 (56%), Gaps = 8/313 (2%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            V+  L  +G  +  FL+ K IN   HF  V+ A   F +     I +WNA+ +  T   
Sbjct: 5   QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 64

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
             +  + +Y  M+   + +  + FT+ YVLKAC     G S+   GK+IH    ++G+  
Sbjct: 65  IVDAPIRMY--MDMQISQVHPNCFTFLYVLKAC----GGTSVEGIGKQIHGQTFKYGFGS 118

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            V +  +L+ MYA+FG + YA  VF ++  + VVSW+++I+ Y +NG   EAL +F+E  
Sbjct: 119 NVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKE-- 176

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           M   ++ P+ + +VSV+ A   +  L QGK IHG + + GL+    +V +L TMYA+ G 
Sbjct: 177 MRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGL 236

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +E+ +  F+ M+K +++ WN++IS Y  +GYG +AI++F+EMI   +    I+  S + A
Sbjct: 237 VEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLA 296

Query: 401 CSHAGLVEEGKML 413
            +  G +E  + L
Sbjct: 297 SAQVGSLELARWL 309



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 112/208 (53%), Gaps = 2/208 (0%)

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
           KH  +++  ++  G +    +M   I+    FG V YA   F +++  +++ W+A+I  Y
Sbjct: 1   KHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGY 60

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
            +  +    + ++  M M+   + PN  T + VL+AC   +    GK IHG   + G  S
Sbjct: 61  TQKNIVDAPIRMY--MDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGS 118

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            + V ++LV+MYA+ G++   + VFD +  R VVSW S+IS Y  +G   +A+ +FKEM 
Sbjct: 119 NVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMR 178

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGK 411
              V P  I+ VSV+ A ++   + +GK
Sbjct: 179 QCNVKPDWIALVSVMTAYTNVEDLGQGK 206


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/485 (43%), Positives = 315/485 (64%), Gaps = 4/485 (0%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G+  ++ TY  VL            L+ G+ +H+ V   G    V + T L++MY +   
Sbjct: 5   GVERNKVTYVTVLSGFTTPGS----LEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           V  A   F +++  NVVSWSAM+A YA+NG A  ALEL+REM      + PN VT +++L
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            AC+ L AL +G+ IH  +  RG D+ L V +ALV  Y RCG L   + VFD M +RDV+
Sbjct: 121 DACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVI 180

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           SW+S+IS++   G   +A++++  M+  G  P  I F+SVL ACS++G+VE     F S+
Sbjct: 181 SWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSI 240

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
             +  + P++EHYACMVD+LGRA KL +A  ++  +   PGP ++ ++L +C+++ +VE 
Sbjct: 241 VGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVER 300

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
            E A++ +FEL+P N+  Y+ LA++Y+AA    +  R+++L+E RG++K PG S IEV  
Sbjct: 301 GEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLD 360

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
           +++ F++ D+ HPQ ++++A +  L  +MKE GY   TKVVL D++ +EKE ++  HSEK
Sbjct: 361 RVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEK 420

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AFGLI+T  G  +RI KNLR+C DCH+ TK ISK   +EILVRD NRFHHF +G+CS
Sbjct: 421 LAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCS 480

Query: 658 CGDYW 662
           C DYW
Sbjct: 481 CNDYW 485



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 174/382 (45%), Gaps = 45/382 (11%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
           +++  +E N    TY  +L   T   SL +   VHS +   G + D  + T L+N+Y   
Sbjct: 1   MEIRGVERNKV--TYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKC 58

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
            SV++AR  F+K  R  +  W+A+  A    G     LELYR M     G+  +R T+  
Sbjct: 59  QSVEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFIT 118

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           +L AC         L  G++IHA+V   G++  + +   L++ Y R G +  A  VF  M
Sbjct: 119 LLDAC----SFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGM 174

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE- 307
             ++V+SWS+MI+ +A+ G   EA+EL+  M+ E     P+ +  +SVL AC+    +E 
Sbjct: 175 RRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEG--TLPDDIIFISVLFACSNSGVVEA 232

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G      +    ++  L   + +V +  R GKL            RD            
Sbjct: 233 SGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKL------------RD------------ 268

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
                  A  + + M +H   P P+ ++++L AC     VE G+   E + +  +   + 
Sbjct: 269 -------AEDLLRLMPFH---PGPLLYMTMLSACKLYTDVERGEAAAEVVFE--LDPENS 316

Query: 428 EHYACMVDLLGRANKLEEAAKI 449
             Y  + ++   A + ++AA+I
Sbjct: 317 SPYITLANIYSAAKRPKDAARI 338



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 99/176 (56%), Gaps = 3/176 (1%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           ME   +  N VT V+VL       +LE+G+ +H  +   GL+  + V +ALV MY +C  
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM--IYHGVSPSPISFVSVL 398
           +E  +  F+ + + +VVSW++++++Y  +G+   A+++++EM     G++P+ ++F+++L
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
            ACS  G + EG+ +  ++  E      +     +V+  GR   L +A  + + +R
Sbjct: 121 DACSFLGALAEGRKIHAAV-AERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMR 175


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/568 (38%), Positives = 350/568 (61%), Gaps = 9/568 (1%)

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRA 155
           LS+   ++S ++    + D  ++   +N++ +   + DAR +F+    R +  WN +   
Sbjct: 223 LSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITF 282

Query: 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
                   E + L+ R+   G  I+++  T+  +L    +     + L  GK IH  V  
Sbjct: 283 YVQNENFGEAVRLFGRLQQDG--IKANDITFVLMLNVYTS----LTSLAKGKVIHELVKE 336

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
            GY+  V + T L+ +Y R      A  +F  M  K+V++W+ M   YA+NG   EAL+L
Sbjct: 337 AGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQL 396

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F+EM +E     P S T+V+VL  CA LAAL++G+ IH +I+  G    + V +AL+ MY
Sbjct: 397 FQEMQLEGRR--PTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMY 454

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
            +CGK+   + VF+ M KRD++ WNS++ +Y  HGY  + +Q+F +M   G     +SFV
Sbjct: 455 GKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFV 514

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR- 454
           SVL A SH+G V +G   F +M ++  I P+ E Y C+VDLLGRA +++EA  I+  L  
Sbjct: 515 SVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSG 574

Query: 455 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514
             P   +W +LLG+CR H   + A+ A++++ E +P+++G YV+L++VYAAA  WD V R
Sbjct: 575 CLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNR 634

Query: 515 VKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQ 574
           +++L+ +RG++K PGRS IE+  +++ F+  D  HP+   ++A L  L++EM+  GY+P 
Sbjct: 635 MRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPD 694

Query: 575 TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
           TK++L+D++ E KE ++  HSE+LA+AFGL++T  G  +R+ KNLR+C DCH+ TK+ISK
Sbjct: 695 TKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTATKYISK 754

Query: 635 FANKEILVRDVNRFHHFRNGVCSCGDYW 662
              +EILVRD +RFH+F++G CSC DYW
Sbjct: 755 LRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 190/376 (50%), Gaps = 9/376 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P    +  LL  C+   ++     VH H+ D GF+Q+  +   LI +Y+   SV +A+ V
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 62

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+   R+ ++ W  +       G  +  L ++ +M      +   + TY  +L AC ++ 
Sbjct: 63  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEED--VMPTKVTYVAILNACASTE 120

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                LK G EIH  +L+ G+ G V + T LI+MY + G V  A   F ++  ++VVSW+
Sbjct: 121 S----LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWT 176

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMIA   ++     A  L+R M ++   + PN +T+ +V  A      L +GK I+  + 
Sbjct: 177 AMIAACVQHDQFALARWLYRRMQLDG--VVPNKITLYTVFNAYGDPHYLSEGKFIYSLVS 234

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
            R ++S + V+++ + M+   G L   + +F+ M  RDVV+WN +I+ Y  +   G+A++
Sbjct: 235 SRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVR 294

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F  +   G+  + I+FV +L   +    + +GK++ E +++    R  V   A M  L 
Sbjct: 295 LFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALM-SLY 353

Query: 438 GRANKLEEAAKIIEDL 453
           GR     +A KI  D+
Sbjct: 354 GRCEAPGQAWKIFVDM 369



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 160/325 (49%), Gaps = 5/325 (1%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           + HG+ +H  V   G+     +   LI MYA+ G V  A  VF  +  K+V +W+ MI  
Sbjct: 21  VDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGI 80

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y + G    AL +F +M  +  D+ P  VT V++L ACA+  +L+ G  IHG IL++G +
Sbjct: 81  YCQQGDYDRALGMFYQM--QEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFE 138

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             + V +AL+ MY +CG +      F  ++ RDVVSW ++I++   H     A  +++ M
Sbjct: 139 GDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRM 198

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              GV P+ I+  +V  A      + EGK ++ S+    ++   V      +++ G A  
Sbjct: 199 QLDGVVPNKITLYTVFNAYGDPHYLSEGKFIY-SLVSSRVMESDVRVMNSAMNMFGNAGL 257

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE-PTNAGNYVLLAD 501
           L +A ++ ED+ ++     W  ++     + N   A R   RL +     N   +VL+ +
Sbjct: 258 LGDARRLFEDM-VDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLN 316

Query: 502 VYAAADMWDEVKRVKRLLEARGLQK 526
           VY +     + K +  L++  G  +
Sbjct: 317 VYTSLTSLAKGKVIHELVKEAGYDR 341



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 153/336 (45%), Gaps = 40/336 (11%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+ L+L   T   SL+    +H  + + G+D+D  + T L+++Y   ++   A  +F   
Sbjct: 310 TFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDM 369

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             + +  W  +  A    G  +E L+L++ M   G   R    T   VL  C       +
Sbjct: 370 GSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGR--RPTSATLVAVLDTCAH----LA 423

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L+ G++IH+ ++ +G+   + + T LI+MY + G +  A  VF +MA ++++ W++M+ 
Sbjct: 424 ALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLG 483

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            YA++G   E L+LF +M ++      ++V+ VSVL A +       G +  GY      
Sbjct: 484 AYAQHGYYDETLQLFNQMQLDGEK--ADAVSFVSVLSALS-----HSGSVTDGY------ 530

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
                   A++  ++     EL  CV D +               G  G   +A+ I  +
Sbjct: 531 ----QYFVAMLQDFSITPTPELYGCVVDLL---------------GRAGRIQEAVDIVLK 571

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           +   G  P  I ++++LGAC      ++ K   E +
Sbjct: 572 L--SGCLPDGILWMTLLGACRTHNKTDQAKAAAEQV 605



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 2/115 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PT  T   +L +C H  +L     +HSH+ +NGF  +  + T LIN+Y     + +AR V
Sbjct: 407 PTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSV 466

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           F+K  +R I VWN++  A    G  +E L+L+ +M   G   ++D  ++  VL A
Sbjct: 467 FEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGE--KADAVSFVSVLSA 519


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/660 (35%), Positives = 372/660 (56%), Gaps = 74/660 (11%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
           +D++  +  PTQ T   +L SC    S      VHS +   G      +   L+N+Y+  
Sbjct: 96  VDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKT 155

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFR--------ALTLA--------------------- 159
             +  A+ VFD+ + R    WNA+           L LA                     
Sbjct: 156 GDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCN 215

Query: 160 --GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
             G   E L+ +  +    T ++ DRF+    L AC         L  GK+IH  ++R  
Sbjct: 216 QHGFDNEALQFFSSIL-KDTSLKPDRFSLASALSAC----ANLEKLSFGKQIHGYIVRTM 270

Query: 218 YNGIVHIMTTLIDMYARFGCVMYA----------------------GFV----------- 244
           ++    +   LI MYA+ G V  A                      G+V           
Sbjct: 271 FDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQI 330

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F+ +   +VV+W+AMI  Y +NG+  +A+E+F+ M+ E     PNS T+ ++L A +++ 
Sbjct: 331 FNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPR--PNSFTLAAMLSASSSVT 388

Query: 305 ALEQGKMIHGYILRRGLDSILPVV-SALVTMYARCGKLELGQCVFDHM-DKRDVVSWNSL 362
           +L  GK IH   +R G +++ P V +AL TMYA+ G +   + VF+ +   RD VSW S+
Sbjct: 389 SLNHGKQIHASAIRSG-EALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSM 447

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           I +   HG G +AI++F++M+  G+ P  I++V VL AC+H GLVE+G+  F+ M+  H 
Sbjct: 448 IMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHK 507

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERAS 482
           I P++ HYACMVDL GRA  L+EA K +E++ +EP    WGSLL SC+++ NV+LA+ A+
Sbjct: 508 IDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAA 567

Query: 483 KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSF 542
           +RL  +EP N+G Y  LA+VY++   WD+  ++++L++ARG++K  G S ++++ K + F
Sbjct: 568 ERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVF 627

Query: 543 VSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAF 602
              D  HPQ ++++ ++  +  E+K+ G+ P T+ VL+DL+ E K++I+  HSEKLA+AF
Sbjct: 628 GVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAF 687

Query: 603 GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           G+I+T +  T+RI KNLR+C DCH+  KFISK  ++EI+VRD  RFHHF++G CSC DYW
Sbjct: 688 GIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 196/447 (43%), Gaps = 84/447 (18%)

Query: 111 FDQDPFLVT----KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           F++ P   T     +++ Y+    ++ A  VFD    R    W  +       GR E+ +
Sbjct: 33  FNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAI 92

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVAS-SCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           +++  M      +   +FT T VL +C A+ S G      GK++H+ V++ G +  V + 
Sbjct: 93  KIFVDM--VKDKVLPTQFTLTNVLASCAATGSRGI-----GKKVHSFVVKLGLHACVPVA 145

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA--------------------- 264
            +L++MYA+ G +  A  VF +M ++N  SW+AMI+ +                      
Sbjct: 146 NSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIV 205

Query: 265 ----------RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
                     ++G   EAL+ F   I++   L P+  ++ S L ACA L  L  GK IHG
Sbjct: 206 SWNSMIAGCNQHGFDNEALQFFSS-ILKDTSLKPDRFSLASALSACANLEKLSFGKQIHG 264

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLEL------------------------------- 343
           YI+R   D+   V +AL++MYA+ G +E+                               
Sbjct: 265 YIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDI 324

Query: 344 --GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
              + +F+ +   DVV+W ++I  Y  +G    AI++FK M+  G  P+  +  ++L A 
Sbjct: 325 TPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSAS 384

Query: 402 SHAGLVEEGKMLFES-MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
           S    +  GK +  S +R    + PSV +   +  +  +A  +  A K+   LR      
Sbjct: 385 SSVTSLNHGKQIHASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTV 442

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFE 487
            W S++ +   H    L E A + LFE
Sbjct: 443 SWTSMIMALAQHG---LGEEAIE-LFE 465



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 140/302 (46%), Gaps = 66/302 (21%)

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA--- 269
           +++ G    V++M  L+++YA+ G  + A  +F++M VK   SW+ +++ YA+ G     
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 270 ---------------------------FE-ALELFREMIMESHDLCPNSVTMVSVLQACA 301
                                      FE A+++F +M+ +   + P   T+ +VL +CA
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDK--VLPTQFTLTNVLASCA 118

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM---------- 351
           A  +   GK +H ++++ GL + +PV ++L+ MYA+ G L++ + VFD M          
Sbjct: 119 ATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNA 178

Query: 352 ---------------------DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSP 389
                                 +RD+VSWNS+I+    HG+  +A+Q F  ++    + P
Sbjct: 179 MISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKP 238

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
              S  S L AC++   +  GK +   + +  M   S      ++ +  ++  +E A +I
Sbjct: 239 DRFSLASALSACANLEKLSFGKQIHGYIVRT-MFDASGAVGNALISMYAKSGGVEIARRI 297

Query: 450 IE 451
           IE
Sbjct: 298 IE 299


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/650 (36%), Positives = 373/650 (57%), Gaps = 55/650 (8%)

Query: 47  LSSRNK---NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVH 103
           +++RN+   + +I +L + G +  A  V   +P  +  +   +L     +  + DA  + 
Sbjct: 285 MAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKIL- 343

Query: 104 SHLTDNGFDQ--DPFLVT--KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
                  FDQ  +P +V+   +I  Y   + VD+A  +F++   R    W  +       
Sbjct: 344 -------FDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARN 396

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
           GR E+ L   + ++  G        T ++   AC         L+ GK++H+  ++ G  
Sbjct: 397 GRSEQALVSLQALHRKGMLPSLSSLTSSFF--AC----SNIEALETGKQVHSLAVKAGCQ 450

Query: 220 GIVHIMTTLIDMYARF----------------GCVMYAGF---------------VFSQM 248
              ++   LI +Y ++                  V Y  F               VF+ M
Sbjct: 451 FNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNM 510

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
              +VVSW+ +I+  A+     EA+E+FR M+ E     PN   +  +L     L A + 
Sbjct: 511 PSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERE--LPNPPILTILLGLSGNLGAPQL 568

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           G+ IH   ++ G+DS L V +ALV+MY +C   +  + VFD M++RD+ +WN++I+ Y  
Sbjct: 569 GQQIHTIAIKLGMDSGLVVANALVSMYFKCSSADSLK-VFDSMEERDIFTWNTIITGYAQ 627

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           HG G +AI++++ M+  GV P+ ++FV +L ACSH+GLV+EG   F+SM  ++ + P +E
Sbjct: 628 HGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLE 687

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
           HYACMVDLLGRA  ++ A   I D+ IEP   +W +LLG+C+IH NVE+  RA+++LF +
Sbjct: 688 HYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSI 747

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
           EP+NAGNYV+L+++Y++  MWDEV +V++L++ RG+ K PG S +++K KM+SFV+ DE 
Sbjct: 748 EPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEE 807

Query: 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
           H Q + ++A L  L   +K  GYVP T  VL+D+D E+KE  +L HSEKLAVA+GL+ T 
Sbjct: 808 HEQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTP 867

Query: 609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSC 658
           KG  I+I KNLR+C DCH+F KF+S    +EI VRD NRFHHFRNG CSC
Sbjct: 868 KGMPIQIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 152/322 (47%), Gaps = 23/322 (7%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSH-FDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
           ++H  +   GF++D  + T ++N Y+   + +D A   F+    R  Y W+ +  AL+ A
Sbjct: 244 SIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQA 303

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL-RHGY 218
           GR ++   +Y+R        R+   T                L ++G+   A +L    +
Sbjct: 304 GRIDDAFAVYQRDPLKSVPSRTSMLT---------------GLARYGRIDDAKILFDQIH 348

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
              V     +I  Y +   V  A  +F++M  +N +SW+ MIA YARNG + +AL   + 
Sbjct: 349 EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQA 408

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
             +    + P+  ++ S   AC+ + ALE GK +H   ++ G      V +AL+T+Y + 
Sbjct: 409 --LHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKY 466

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
             +   + +FD M  +D VS+NS +S+   +    +A  +F  M     SP  +S+ +++
Sbjct: 467 RSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNM----PSPDVVSWTTII 522

Query: 399 GACSHAGLVEEGKMLFESMRKE 420
            AC+ A    E   +F SM  E
Sbjct: 523 SACAQADQGNEAVEIFRSMLHE 544



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 102/256 (39%), Gaps = 55/256 (21%)

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
           +A  R L   GR  E  E++  M           F       + + + C   +   G+ +
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMP----------FRDIIAWNSMIFAYCNNGMPDAGRSL 86

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
             ++      G +   T L+  YAR G V  A  VF  M V+N V+W+AM+ CY +NG  
Sbjct: 87  ADAI----SGGNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDI 142

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
             A +LF  M   S D+                                          +
Sbjct: 143 TLARKLFDAM--PSRDVSS---------------------------------------WN 161

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
            ++T Y     +E  + +F+ M +R+ VSW  +IS Y +    G+A  +F+ M+  G++P
Sbjct: 162 TMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTP 221

Query: 390 SPISFVSVLGACSHAG 405
              + VSVL A  H G
Sbjct: 222 EQPNLVSVLSAVRHLG 237



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 135/296 (45%), Gaps = 21/296 (7%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           ++  Y H   +++AR++F++   R    W  +     L  +     +++R M     G+ 
Sbjct: 163 MLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTM--LCEGMT 220

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHG--KEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
            ++     VL A         L K G  + IH  V + G+   V + T +++ Y +   +
Sbjct: 221 PEQPNLVSVLSAVR------HLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNM 274

Query: 239 MYAGF-VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           + +    F  MA +N  +WS +IA  ++ G   +A  +++   ++S    P+  +M++ L
Sbjct: 275 LDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKS---VPSRTSMLTGL 331

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
              A    ++  K++   I    + S     +A++T Y +   ++  + +F+ M  R+ +
Sbjct: 332 ---ARYGRIDDAKILFDQIHEPNVVSW----NAMITGYMQNEMVDEAEDLFNRMPFRNTI 384

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           SW  +I+ Y  +G   +A+   + +   G+ PS  S  S   ACS+   +E GK +
Sbjct: 385 SWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQV 440



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 47/196 (23%)

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
            R G +  A  VF  M  +++++W++MI  Y  NGM                        
Sbjct: 44  GRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMP----------------------- 80

Query: 293 MVSVLQACAALA-ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
                 A  +LA A+  G +  G IL  G              YAR G++   + VFD M
Sbjct: 81  -----DAGRSLADAISGGNLRTGTILLSG--------------YARAGRVRDARRVFDGM 121

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             R+ V+WN++++ Y  +G    A ++F  M    VS    S+ ++L    H+ L+EE +
Sbjct: 122 GVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVS----SWNTMLTGYCHSQLMEEAR 177

Query: 412 MLFESMRKEHMIRPSV 427
            LFE M + + +  +V
Sbjct: 178 NLFERMPERNGVSWTV 193



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 26/191 (13%)

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           SA +    R G+L   + VFD M  RD+++WNS+I +Y  +G       +   +    + 
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLR 96

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
              I    +L   + AG V + + +F+ M     +R +V  +  MV    +   +  A K
Sbjct: 97  TGTI----LLSGYARAGRVRDARRVFDGMG----VRNTVA-WNAMVTCYVQNGDITLARK 147

Query: 449 IIEDLRIEPGPKV--WGSLLGSCRIHCNVELAERASKRLFELEPTNAG--------NYVL 498
           + + +   P   V  W ++L     +C+ +L E A + LFE  P   G         YVL
Sbjct: 148 LFDAM---PSRDVSSWNTMLTG---YCHSQLMEEA-RNLFERMPERNGVSWTVMISGYVL 200

Query: 499 LADVYAAADMW 509
           +     A DM+
Sbjct: 201 IEQHGRAWDMF 211


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/616 (37%), Positives = 359/616 (58%), Gaps = 14/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDVL-SIEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHLT 107
           N +I    K  + R A ++L  ++        E+ LL+    C           +H +  
Sbjct: 368 NSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYAL 427

Query: 108 DNGFDQ-DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
            +GF Q D  +    +  Y+   S+  A  VF     + +  WNAL       G   + L
Sbjct: 428 RHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKAL 487

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +LY  M G+G  +  D FT   +L AC         L  GKEIH S+LR+G+     I  
Sbjct: 488 DLYLLMRGSG--LEPDLFTIASLLSACAR----LKSLSCGKEIHGSMLRNGFELDEFICI 541

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +L+ +Y + G ++ A   F  M  KN+V W+ MI  +++N   F+AL++F +M+  S  +
Sbjct: 542 SLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQML--SSKI 599

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+ ++++  L AC+ ++AL  GK +H + ++  L     V  +L+ MYA+CG +E  Q 
Sbjct: 600 WPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQN 659

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +FD +  +  V+WN LI+ YG+HG+G KAI++FK M   G  P  ++F+++L AC+HAGL
Sbjct: 660 IFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGL 719

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V EG      M+    I+P +EHYAC+VD+LGRA +L EA +++ +L  +P  ++W SLL
Sbjct: 720 VAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLL 779

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            SCR + ++++ E+ + +L EL P  A NYVL+++ YA    WDEV+++++ ++  GLQK
Sbjct: 780 SSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQK 839

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S IE+  K+  F+  DE   Q  ++    I L  ++ + GY P T  VL++L+ +E
Sbjct: 840 DAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDE 899

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           K +I+  HSEKLA++FGL+NT+KG T+R+ KNLR+C DCH+  K +SK   +EI+VRD  
Sbjct: 900 KIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNK 959

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF+NG CSCGDYW
Sbjct: 960 RFHHFKNGFCSCGDYW 975



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 197/398 (49%), Gaps = 26/398 (6%)

Query: 14  RSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL---- 69
           + P+H+ +    PPK S       L S    +    +N ++   +LC  GNL QA     
Sbjct: 29  KIPFHSFT----PPKSSH------LFSPIISSHKKQQNASKHFHNLCNTGNLNQAFNFLQ 78

Query: 70  ----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL-TDNGFDQDPFLVTKLINV 124
               DV+S   +  +    LLL  C  + ++     +H+ + T   F  D  L+T+L+ +
Sbjct: 79  SNLNDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTM 138

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
           YS  DS  D+  VF+ +RR+ +++WNAL           + + ++  M    T    D F
Sbjct: 139 YSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISL-TEFVPDNF 197

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           T   V+KACV    G   ++ G+ +H   L+      V +   LI MY +FG V  A  V
Sbjct: 198 TLPCVIKACV----GVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKV 253

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F +M  +N+VSW++++     NG+  E+  LF+ ++     L P+  TMV+V+  CA   
Sbjct: 254 FDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQG 313

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
            +  G + HG  L+ GL   L V S+L+ MY++CG L   + +FD  ++++V+SWNS+I 
Sbjct: 314 EVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIG 372

Query: 365 SYGVHGYGGKAIQIFKEM-IYHGVSPSPISFVSVLGAC 401
            Y        A ++ ++M +   V  + ++ ++VL  C
Sbjct: 373 GYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 117/250 (46%), Gaps = 41/250 (16%)

Query: 198 CG-FSLLKHGKEIH--ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
           CG +  ++ G++IH   S   H  N +V ++T L+ MY+       +  VF+    KN+ 
Sbjct: 103 CGEYKNIEIGRKIHNFISTSPHFQNDVV-LITRLVTMYSICDSPYDSCLVFNASRRKNLF 161

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
            W+A+++ Y RN +  +A+ +F EMI  + +  P++ T+  V++AC  +  +  G+ +HG
Sbjct: 162 LWNALLSGYLRNSLFRDAVFVFVEMISLT-EFVPDNFTLPCVIKACVGVYDVRLGEAVHG 220

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
           + L+  + S                               DV   N+LI+ YG  G+   
Sbjct: 221 FALKTKVLS-------------------------------DVFVGNALIAMYGKFGFVES 249

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES-MRKEHMIRPSVEHYACM 433
           A+++F +M    +    +S+ SV+ AC   G+ EE   LF+  +  +  + P V     +
Sbjct: 250 AVKVFDKMPQRNL----VSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTV 305

Query: 434 VDLLGRANKL 443
           + L  R  ++
Sbjct: 306 IPLCARQGEV 315


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/635 (37%), Positives = 360/635 (56%), Gaps = 78/635 (12%)

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD---ARHVFDKTRRRTIYVWNAL 152
           L+  + +H+ +     D + F++ KL+       S +D   AR VFD+      ++WN +
Sbjct: 16  LNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTM 75

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK---HGKEI 209
            RA   +   +E + L+ +M      I  D ++ + V++AC         LK   +G+++
Sbjct: 76  IRAYLNSQNPQESMSLFFQMRHQEC-IPIDSYSLSLVIQAC-------GRLKDPGNGQKL 127

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFG--------------------CVMYAGFV----- 244
           H  VL+ G    + + T LI+MYA+FG                     V+ A +V     
Sbjct: 128 HTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEI 187

Query: 245 ------FSQMAVKNVVSW-------------------------------SAMIACYARNG 267
                 F +M  +++VSW                               S+MIA YA+  
Sbjct: 188 NLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKAR 247

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
            + EAL LF EM +   ++ P+ VTMVSVL AC  + AL  GKMIH  I R  ++  L +
Sbjct: 248 QSNEALRLFHEMQLA--NVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKL 305

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
            ++LV MYA+CG ++    VF+ M+ RDV +W+++I     HG+G  A+  F +MI   +
Sbjct: 306 GTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDI 365

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
            P+ ++F+ VL ACSH GLV+EG   F SM K + + P +EHY C+VD+LGRA +L+EA 
Sbjct: 366 KPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAM 425

Query: 448 KIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507
           ++I+ +   P   VW +LLG+CRI+ NVE+AE A+  L ELEP   GNYVLL+++Y+ A 
Sbjct: 426 ELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAK 485

Query: 508 MWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK 567
            WD+V  V+R+++   +QKVPG S IEV   ++ FV+ D+ HP+ +++  +L  ++A +K
Sbjct: 486 EWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLK 545

Query: 568 EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHS 627
             GY P T  VL D D +EKE  +  HSEKLA+AFGL++T+ G TIRI KNLR+C+DCH 
Sbjct: 546 ANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHI 605

Query: 628 FTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             K IS+   + I+VRD NRFHHF NG CSC DYW
Sbjct: 606 AIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 47/226 (20%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T   +L +C    +L     +H  +  N  + D  L T L+++Y+    +D++  V
Sbjct: 266 PDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRV 325

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+    R ++ W+A+   L   G GE  L+ + +M      I+ +  T+  VL AC    
Sbjct: 326 FNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKM--ISEDIKPNDVTFIGVLSACS--- 380

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR---FGCVMYAGFVFSQMAVKNVV 254
                       H  ++  G+      M+ + D+  +   +GCV                
Sbjct: 381 ------------HIGLVDEGWTYFTS-MSKVYDVSPKIEHYGCV---------------- 411

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
                +    R G   EA+EL + M        P+++   ++L AC
Sbjct: 412 -----VDILGRAGRLQEAMELIKSM-----PFAPDAIVWRALLGAC 447


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/570 (38%), Positives = 348/570 (61%), Gaps = 9/570 (1%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
           N LS+   V+  ++    + D  ++   +N++ +   + DAR +F+    R +  WN + 
Sbjct: 220 NYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVI 279

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                     E + L+ R+   G  ++++  T+  +L    +     + L  GK IH  V
Sbjct: 280 TLYVQNENFGEAVRLFGRLQQDG--VKANDITFVLMLNVYTS----LTSLAKGKVIHELV 333

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
              GY+    + T L+ +Y R      A  +F  M  K+V++W+ M   YA+NG   EAL
Sbjct: 334 KEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEAL 393

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
           +LF+EM +E     P S T+V+VL  CA LAAL++G+ IH +I+       + V +AL+ 
Sbjct: 394 QLFQEMQLEGRR--PTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALIN 451

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MY +CGK+     VF+ M KRD++ WNS++ +Y  HGY  + +Q+F +M   GV    +S
Sbjct: 452 MYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVS 511

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           FVSVL A SH+G V +G   F +M ++  I P+ E Y C+VDLLGRA +++EA  I+  L
Sbjct: 512 FVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKL 571

Query: 454 R-IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
               P   +W +LLG+CR H   + A+ A++++ E +P+++G YV+L++VYAAA  WD V
Sbjct: 572 SGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGV 631

Query: 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV 572
            R+++L+ +RG++K PGRS IE+  +++ F+  D  HP+   ++A L  L++EM+  GY+
Sbjct: 632 NRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYI 691

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
           P TK++L+D++ E KE ++  HSE+LA+AFGLI+T  G  +R+ KNLR+C DCH+ TK+I
Sbjct: 692 PDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYI 751

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           SK   +EILVRD +RFH+F++G CSC DYW
Sbjct: 752 SKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P    +  LL  C+   ++     VH H+ D GF+Q+  +   LI +Y+   SV +A+ V
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+   R+ ++ W  +       G  +  L ++ +M      +   + TY  +L AC ++ 
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEED--VMPTKVTYVAILNACASTE 119

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                LK G EIH  +L+ G+ G V + T LI+MY + G V  A   F ++  ++VVSW+
Sbjct: 120 S----LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWT 175

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMIA   ++     A  L+R M ++   + PN +T+ +V  A      L +GK ++G + 
Sbjct: 176 AMIAACVQHDQFALARWLYRRMQLDG--VVPNKITLYTVFNAYGDPNYLSEGKFVYGLVS 233

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
              ++S + V+++ V M+   G L   + +F+ M  RDVV+WN +I+ Y  +   G+A++
Sbjct: 234 SGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVR 293

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F  +   GV  + I+FV +L   +    + +GK++ E +++    R +V   A M  L 
Sbjct: 294 LFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALM-SLY 352

Query: 438 GRANKLEEAAKIIEDL 453
           GR     +A KI  D+
Sbjct: 353 GRCEAPGQAWKIFVDM 368



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 159/325 (48%), Gaps = 5/325 (1%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           + HG+ +H  V   G+     +   LI MYA+ G V  A  VF  +  K+V +W+ MI  
Sbjct: 20  VDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGI 79

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y + G    AL +F +M  +  D+ P  VT V++L ACA+  +L+ G  IHG IL++G +
Sbjct: 80  YCQQGDYDRALGMFYQM--QEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFE 137

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             + V +AL+ MY +CG +      F  ++ RDVVSW ++I++   H     A  +++ M
Sbjct: 138 GDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRM 197

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              GV P+ I+  +V  A      + EGK ++  +    ++   V      V++ G A  
Sbjct: 198 QLDGVVPNKITLYTVFNAYGDPNYLSEGKFVY-GLVSSGVMESDVRVMNSAVNMFGNAGL 256

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE-PTNAGNYVLLAD 501
           L +A ++ ED+ ++     W  ++     + N   A R   RL +     N   +VL+ +
Sbjct: 257 LGDARRLFEDM-VDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLN 315

Query: 502 VYAAADMWDEVKRVKRLLEARGLQK 526
           VY +     + K +  L++  G  +
Sbjct: 316 VYTSLTSLAKGKVIHELVKEAGYDR 340



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 153/336 (45%), Gaps = 40/336 (11%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+ L+L   T   SL+    +H  + + G+D+D  + T L+++Y   ++   A  +F   
Sbjct: 309 TFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDM 368

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             + +  W  +  A    G  +E L+L++ M   G   R    T   VL  C       +
Sbjct: 369 GSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGR--RPTSATLVAVLDTCAH----LA 422

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L+ G++IH+ ++ + +   + + T LI+MY + G +  A  VF +MA ++++ W++M+ 
Sbjct: 423 ALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLG 482

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            YA++G   E L+LF +M ++   +  ++V+ VSVL A +       G +  GY      
Sbjct: 483 AYAQHGYYDETLQLFNQMQLDG--VKADAVSFVSVLSALS-----HSGSVTDGY------ 529

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
                   A++  ++     EL  CV D +               G  G   +A+ I  +
Sbjct: 530 ----QYFVAMLQDFSITPTPELYGCVVDLL---------------GRAGRIQEAVDIVLK 570

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           +   G  P  I ++++LGAC      ++ K   E +
Sbjct: 571 L--SGCLPDGILWMTLLGACRTHNKTDQAKAAAEQV 604



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 2/115 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PT  T   +L +C H  +L     +HSH+ +N F  +  + T LIN+Y     + +A  V
Sbjct: 406 PTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSV 465

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           F+K  +R I VWN++  A    G  +E L+L+ +M     G+++D  ++  VL A
Sbjct: 466 FEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQ--LDGVKADAVSFVSVLSA 518


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/603 (38%), Positives = 351/603 (58%), Gaps = 23/603 (3%)

Query: 72  LSIEPNPTQHTYEL----------LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKL 121
           LS+  NP Q + EL          LL  C    S+ +   VH+H+   G   D F  + L
Sbjct: 13  LSLPNNPPQSS-ELNAKFNVQGLSLLKRC---KSMEEFKQVHAHILKLGLFYDSFCGSNL 68

Query: 122 INV--YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
           +     S + S++ A  +F +      + +N + R    +   EE L LY  M     GI
Sbjct: 69  VATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEM--LERGI 126

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
             D FTY +VLKAC         LK G +IHA V + G  G V +   LI+MY + G + 
Sbjct: 127 EPDNFTYPFVLKACSL----LGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIE 182

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
           +A  VF QM  K+V SWS++I  +A   M  E L L  +M  E       S+ +VS L A
Sbjct: 183 HASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESI-LVSALSA 241

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           C  L +   G+ IHG +LR   +  + V ++L+ MY + G LE G CVF +M +++  S+
Sbjct: 242 CTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSY 301

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
             +I+   +HG G +A+ +F +M+  G++P  + +V VL ACSHAGLV EG   F  ++ 
Sbjct: 302 TVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQF 361

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
           EH I+P+++HY CMVDL+GRA  L+ A  +I+ + I+P   VW SLL +C++H N+E+ E
Sbjct: 362 EHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGE 421

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKM 539
            A++ +F+L   N G+Y++LA++YA A  W +V R++  +  + L + PG S +E  R +
Sbjct: 422 IAAENIFKLNQHNPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANRNV 481

Query: 540 YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA 599
           Y FVS D+  PQ E ++ ++  +  ++K +GY P    VL D+D +EK + +  HS+KLA
Sbjct: 482 YKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLA 541

Query: 600 VAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           +AF LI TS+G  IRI++N+R+C DCH++TKFIS    +EI VRD NRFHHF++G CSC 
Sbjct: 542 IAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCK 601

Query: 660 DYW 662
           DYW
Sbjct: 602 DYW 604



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 177/402 (44%), Gaps = 48/402 (11%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+      NL +AL    ++L     P   TY  +L +C+   +L + + +H+H+  
Sbjct: 99  NTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFK 158

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G + D F+   LIN+Y    +++ A  VF++   +++  W+++  A        E L L
Sbjct: 159 AGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLML 218

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACV-ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
              M+G G   R++       L AC    S  F     G+ IH  +LR+     V + T+
Sbjct: 219 LGDMSGEGRH-RAEESILVSALSACTHLGSPNF-----GRCIHGILLRNISELNVAVKTS 272

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           LIDMY + G +     VF  MA KN  S++ +I   A +G   EAL +F +M+ E   L 
Sbjct: 273 LIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEG--LA 330

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+ V  V VL AC+           H  ++  GL               +C      +  
Sbjct: 331 PDDVVYVGVLSACS-----------HAGLVNEGL---------------QC----FNRLQ 360

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F+H  K  +  +  ++   G  G    A  + K M    + P+ + + S+L AC     +
Sbjct: 361 FEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSM---PIKPNDVVWRSLLSACKVHHNL 417

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
           E G++  E++ K +   P    Y  + ++  RA K  + A+I
Sbjct: 418 EIGEIAAENIFKLNQHNPG--DYLVLANMYARAKKWADVARI 457


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/587 (38%), Positives = 342/587 (58%), Gaps = 46/587 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  +L +C+   ++     +H   T  G     F+   L+++Y     + +AR V
Sbjct: 138 PDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLV 197

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
            D+  RR +  WN+L        R ++ LE+ R M                         
Sbjct: 198 LDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVK--------------------- 236

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                + H     AS+L    N                  VMY   +F +M  K++VSW+
Sbjct: 237 -----ISHDAGTMASLLPAVSNTTTE-------------NVMYVKDMFFKMGKKSLVSWN 278

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            MI  Y +N M  EA+EL+  M  E+    P++V++ SVL AC   +AL  GK IHGYI 
Sbjct: 279 VMIGVYMKNAMPVEAVELYSRM--EADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIE 336

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R+ L   L + +AL+ MYA+CG LE  + VF++M  RDVVSW ++IS+YG  G G  A+ 
Sbjct: 337 RKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVA 396

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F ++   G+ P  I+FV+ L ACSHAGL+EEG+  F+ M   + I P +EH ACMVDLL
Sbjct: 397 LFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLL 456

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA K++EA + I+D+ +EP  +VWG+LLG+CR+H + ++   A+ +LF+L P  +G YV
Sbjct: 457 GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYV 516

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++YA A  W+EV  ++ +++++GL+K PG S +EV R +++F+  D  HPQ ++++ 
Sbjct: 517 LLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYR 576

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE-----T 612
            L  L  +MKE GYVP ++  L+D++ E+KE  +  HSEKLA+ F L+NT + E     T
Sbjct: 577 ELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNT 636

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           IRITKNLR+C DCH   K IS+  ++EI++RD NRFH FR GVCSC 
Sbjct: 637 IRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCA 683



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 154/342 (45%), Gaps = 22/342 (6%)

Query: 38  LNSSTTPTSLSSR--NKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS 95
           ++ S T   LSS     N L+    K G L +A  VL         ++  L++    +  
Sbjct: 162 IHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQR 221

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF--DSVDDARHVFDKTRRRTIYVWNALF 153
             DAL V   +       D   +  L+   S+   ++V   + +F K  ++++  WN + 
Sbjct: 222 FDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMI 281

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                     E +ELY RM   G     D  + T VL AC  +S     L  GK+IH  +
Sbjct: 282 GVYMKNAMPVEAVELYSRMEADG--FEPDAVSITSVLPACGDTSA----LSLGKKIHGYI 335

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
            R      + +   LIDMYA+ GC+  A  VF  M  ++VVSW+AMI+ Y  +G   +A+
Sbjct: 336 ERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAV 395

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK-----MIHGYILRRGLDSILPVV 328
            LF +  ++   L P+S+  V+ L AC+    LE+G+     M   Y +   L+ +    
Sbjct: 396 ALFSK--LQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHL---- 449

Query: 329 SALVTMYARCGKL-ELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           + +V +  R GK+ E  + + D   + +   W +L+ +  VH
Sbjct: 450 ACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVH 491



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 2/198 (1%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           + +H+ ++         +   L+  YA    V  A  VF ++  +NV+  + MI  Y  N
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           G   E +++F  M     ++ P+  T   VL+AC+    +  G+ IHG   + GL S L 
Sbjct: 119 GFYGEGVKVFGTMC--GCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLF 176

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           V + LV+MY +CG L   + V D M +RDVVSWNSL+  Y  +     A+++ +EM    
Sbjct: 177 VGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVK 236

Query: 387 VSPSPISFVSVLGACSHA 404
           +S    +  S+L A S+ 
Sbjct: 237 ISHDAGTMASLLPAVSNT 254


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/641 (36%), Positives = 369/641 (57%), Gaps = 48/641 (7%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           +I +L   G +  A+ V   +P  +  +   LL        +++A  +   + D      
Sbjct: 296 MIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPD------ 349

Query: 115 PFLVT--KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           P +V+   +I  Y     VD+A+ +FD+   R    W  +       GR EE L+L + +
Sbjct: 350 PIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQAL 409

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
           +  G  +     + T    AC  S  G   L+ G+++H+  ++ G     ++   LI MY
Sbjct: 410 HRNG--MLPSLSSLTSSFLAC--SHIG--ALETGRQVHSLAVKAGCQFNSYVCNALISMY 463

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM------------------------ 268
            +   + Y   VF++M VK+ VSW++ IA   +N M                        
Sbjct: 464 GKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIIS 523

Query: 269 -------AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
                    EA+E F+ M+ E     PNS  +  +L  C  L + + G+ IH   ++ G+
Sbjct: 524 AYAQAERGDEAVEFFKTMLHEHEK--PNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGM 581

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           DS L V +AL++MY +CG  +    VFD M++RD+ +WN+ I+    HG G +AI++++ 
Sbjct: 582 DSELIVANALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEH 640

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   GV P+ ++FV +L ACSHAGLV+EG   F+SM +++ + P +EHYACMVDLLGR  
Sbjct: 641 MESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTG 700

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
            ++ A K I D+ IEP   +W +LLG+C+IH N E+  RA+++LF  EP+NAGNYV+L++
Sbjct: 701 DVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSN 760

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +Y++  MW EV  ++++++ RG+ K PG S ++++ K++SFV+ D+ H + E++   L +
Sbjct: 761 IYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQD 820

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           L   ++  GYVP T+ VL+D+D E+KE  +L HSEKLAVA+GL+ T KG  I+I KNLR+
Sbjct: 821 LYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRI 880

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCH+F KF+S    ++I +RD NRFHHFRNG CSCGD+W
Sbjct: 881 CGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 162/347 (46%), Gaps = 23/347 (6%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS-VDDAR 135
           +P Q  +  +L + T    L     +   +   GF+ D  + T ++NVY+   S +D A 
Sbjct: 220 SPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAI 279

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
             FD    R  Y W+ +  AL+  GR +  + +Y R        ++   T          
Sbjct: 280 KFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLT---------- 329

Query: 196 SSCGFSLLKHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
                 L + G+   A +L     + IV     +I  Y + G V  A  +F +M  +N +
Sbjct: 330 -----GLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTI 384

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           SW+ MIA YA+NG + EAL+L +   +  + + P+  ++ S   AC+ + ALE G+ +H 
Sbjct: 385 SWAGMIAGYAQNGRSEEALDLLQA--LHRNGMLPSLSSLTSSFLACSHIGALETGRQVHS 442

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
             ++ G      V +AL++MY +C  +E  + VF+ M  +D VSWNS I++   +     
Sbjct: 443 LAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLED 502

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           A  IF  M+   V    +S+ +++ A + A   +E    F++M  EH
Sbjct: 503 ARHIFDNMLSRDV----VSWTTIISAYAQAERGDEAVEFFKTMLHEH 545



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/492 (20%), Positives = 193/492 (39%), Gaps = 59/492 (11%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N +I + C  G L  A  +          T  +LL        + DA  V     D   +
Sbjct: 68  NSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGYARLGRVLDARRVF----DGMPE 123

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           ++      +++ Y     +  AR +FD    R +  WN++      + +  +   L+++M
Sbjct: 124 RNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQM 183

Query: 173 --------------------NGTG---------TGIRSDRFTYTYVLKACVASSCGFSLL 203
                               +G G          G   D+  +  VL A      G   L
Sbjct: 184 PQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVT----GLQDL 239

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF-VFSQMAVKNVVSWSAMIAC 262
              + +   VL+ G+   V I T+++++Y R    +      F  M  +N  +WS MIA 
Sbjct: 240 GVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAA 299

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL- 321
            +  G    A+ ++    ++S    P+   +++ L  C        G++    IL   + 
Sbjct: 300 LSHGGRIDAAIAVYGRDPVKS---IPSQTALLTGLARC--------GRITEARILFEQIP 348

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           D I+   +A++T Y + G ++  + +FD M  R+ +SW  +I+ Y  +G   +A+ + + 
Sbjct: 349 DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQA 408

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC--MVDLLGR 439
           +  +G+ PS  S  S   ACSH G +E G+ +     K          Y C  ++ + G+
Sbjct: 409 LHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGC---QFNSYVCNALISMYGK 465

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
              +E   ++   +R++     W S + +        + E A      +   +  ++  +
Sbjct: 466 CRNMEYVRQVFNRMRVKDTVS-WNSFIAAL---VQNNMLEDARHIFDNMLSRDVVSWTTI 521

Query: 500 ADVYAAADMWDE 511
              YA A+  DE
Sbjct: 522 ISAYAQAERGDE 533



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 151/341 (44%), Gaps = 33/341 (9%)

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG----TGTGIRSDRFTYTY 188
           +AR VFD    R I  WN++  A   +G  E+   L+  ++G    T T + S       
Sbjct: 51  EAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGYARLGR 110

Query: 189 VLKA-----------CVASSCGFSLLKHGKEIHASVLRHGYNGI----VHIMTTLIDMYA 233
           VL A            VA +   S      +I  ++ R  ++ +    V    +++  Y 
Sbjct: 111 VLDARRVFDGMPERNTVAWNAMVSCYVQNGDI--TMARRLFDAMPSRDVTSWNSMVTGYC 168

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
               ++ A  +F QM  +N+V+W+ MI+ Y R     +  ++FR  +M      P+    
Sbjct: 169 HSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFR--MMHHEGASPDQSNF 226

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR-CGKLELGQCVFDHMD 352
            SVL A   L  L   +++   +L+ G +S + + ++++ +Y R    L++    FD M 
Sbjct: 227 ASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMV 286

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
           +R+  +W+++I++    G    AI ++       + PS  + ++ L  C   G + E ++
Sbjct: 287 ERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARC---GRITEARI 342

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           LFE +       P V  +  M+    +   ++EA ++ + +
Sbjct: 343 LFEQIPD-----PIVVSWNAMITGYMQNGMVDEAKELFDRM 378



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 91/210 (43%), Gaps = 45/210 (21%)

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           AR G +  A  VF  M  +++++W++MI+ Y  +GM  +A  LF  +         N  T
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAIS------GGNVRT 97

Query: 293 MVSVLQACAALA-ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
              +L   A L   L+  ++  G   R  +       +A+V+ Y + G + + + +FD M
Sbjct: 98  ATILLSGYARLGRVLDARRVFDGMPERNTV-----AWNAMVSCYVQNGDITMARRLFDAM 152

Query: 352 DKRDVVSWNSLISSY--------------------------GVHGY-----GGKAIQIFK 380
             RDV SWNS+++ Y                           + GY      GK   IF+
Sbjct: 153 PSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFR 212

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
            M + G SP   +F SVL A +  GL + G
Sbjct: 213 MMHHEGASPDQSNFASVLSAVT--GLQDLG 240



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           SA +   AR G+L   + VFD M  RD+++WNS+IS+Y   G    A  +F  +    V 
Sbjct: 37  SARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR 96

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
            + I    +L   +  G V + + +F+ M + + +
Sbjct: 97  TATI----LLSGYARLGRVLDARRVFDGMPERNTV 127


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/579 (38%), Positives = 350/579 (60%), Gaps = 11/579 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD--DARHVFDKTRR 143
           L+ SC+    L   L +H+H+      Q+ F+  + ++  +   S D   +  VF +  +
Sbjct: 74  LIKSCSKKTHL---LQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMK 130

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
            +   +N + RA +++   E+   LYR M   G  +  +  + ++V+K+C+      S L
Sbjct: 131 PSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRG--VPPNPLSSSFVMKSCIR----ISSL 184

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
             G +IHA +LR G+     ++TTL+D+Y+       A  VF ++   + VSW+ +I+C 
Sbjct: 185 MGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCC 244

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
             N    +AL +F  M   +    P+ VT + +LQACA L ALE G+ +H YI   G D 
Sbjct: 245 IHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDG 304

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            L + ++L+TMY+RCG+LE    +F  MD+R+VVSW+++IS + +HGYG +AI+ F++M 
Sbjct: 305 ALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQ 364

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
             GVSP   +   VL ACSH GLV++G M F+ M K   I P++ HY CMVDLLGRA  L
Sbjct: 365 QLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLL 424

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
           ++A ++I  + I+P   +W +LLG+CRIH +  L ER    L EL+   AG+YVLL ++Y
Sbjct: 425 DQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIY 484

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           ++   WD+V  +++ ++ +G+Q  PG S IE+K K++ FV  D  HP+ ++++ +L  + 
Sbjct: 485 SSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIG 544

Query: 564 AEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCE 623
            ++K  GYV +    L++L AEEK   +  HSEKLA+AFG++ T  G TIR+ KNLR+C 
Sbjct: 545 KQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICV 604

Query: 624 DCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           DCH+F K +S   N+E+++RD  RFHHFR G CSC  YW
Sbjct: 605 DCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 153/312 (49%), Gaps = 10/312 (3%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           + PNP   ++  ++ SC   +SL   L +H+ +  +G   D  L+T L+++YS  D  ++
Sbjct: 164 VPPNPLSSSF--VMKSCIRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEE 221

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  VFD+  +     WN L        R  + L ++  M  T  G   D  T   +L+AC
Sbjct: 222 ACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQAC 281

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                    L+ G+ +H  +  HGY+G +++  +LI MY+R G +  A  +F +M  +NV
Sbjct: 282 A----NLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNV 337

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSWSAMI+ +A +G   EA+E F +  M+   + P+  T+  VL AC+    ++ G M  
Sbjct: 338 VSWSAMISGFAMHGYGREAIEAFEQ--MQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFF 395

Query: 314 GYILRR-GLDSILPVVSALVTMYARCGKLELG-QCVFDHMDKRDVVSWNSLISSYGVHGY 371
             + +  G++  +     +V +  R G L+   Q +   + K D   W +L+ +  +H +
Sbjct: 396 DRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRH 455

Query: 372 GGKAIQIFKEMI 383
                ++   +I
Sbjct: 456 ATLGERVIGHLI 467


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/658 (37%), Positives = 367/658 (55%), Gaps = 72/658 (10%)

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY---- 125
           +++S +  PTQ T   +L SC     L     VHS +  +G      +   L+N+Y    
Sbjct: 135 EMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSG 194

Query: 126 -------------------------SHFDS--VDDARHVFDKTRRRTIYVWNALFRALTL 158
                                    SH  S  VD A+  F++   R +  WNA+      
Sbjct: 195 DPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQ 254

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G   E L+++ +M    +  + D+FT    L AC         LK GK+IHA ++R  +
Sbjct: 255 HGFDREALDIFSKMLMDSSS-KPDKFTLASALSAC----ANLENLKLGKQIHAHIIRTEF 309

Query: 219 NGIVHIMTTLIDMYARFGCVMYA----------------------GFV-----------F 245
           +    +   LI MY++ G V  A                      G+V           F
Sbjct: 310 DTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIF 369

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
             + V++VV+W+AMI  Y +NG   +A+ELFR MI E     PN+ T+ ++L   ++LA+
Sbjct: 370 DSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPK--PNNYTLATMLSVSSSLAS 427

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLIS 364
           L+ G+ IH    R G  S + V +AL+TMYA+ G +   + VF+ +  KRD ++W S+I 
Sbjct: 428 LDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMII 487

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
           +   HG G +A+ +F+ M+ +G+ P  I++V VL AC+H GLVE+G+  +  M+  H I 
Sbjct: 488 ALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKII 547

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484
           P+  HYACM+DL GRA  L+EA   IE++ IEP    WGSLL SC++H NVELAE A++R
Sbjct: 548 PTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAER 607

Query: 485 LFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS 544
           L  +EP N+G Y  LA+VY+A   W+    +++ ++ +G++K  G S +++K K++ F  
Sbjct: 608 LLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGV 667

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604
            D  HPQ + ++ ++  +  E+K+ G+VP T+ VL+DL+ E KE+I+  HSEKLA+AFGL
Sbjct: 668 DDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGL 727

Query: 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I T +  T+RI KNLR+C DCHS  KFISK   +EI+VRD  RFHHF+NG+CSC DYW
Sbjct: 728 ICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 208/480 (43%), Gaps = 99/480 (20%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           ++H+ +   G     FL+  L+N Y+    + DA  VFD+   ++++ WN +       G
Sbjct: 34  SIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGG 93

Query: 161 RGEEVLELYRRM----------------------NGTG-------TGIRSDRFTYTYVLK 191
           R EE   ++  M                      N  G         +   +FT T VL 
Sbjct: 94  RLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLA 153

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           +C A  C    L  G+++H+ V++HG +  + +  +L++MYA+ G  + A  VF +M +K
Sbjct: 154 SCAAVEC----LGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLK 209

Query: 252 -------------------------------NVVSWSAMIACYARNGMAFEALELFREMI 280
                                          +VVSW+AMI+ Y ++G   EAL++F +M+
Sbjct: 210 STSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKML 269

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           M+S    P+  T+ S L ACA L  L+ GK IH +I+R   D+   V +AL++MY++ G 
Sbjct: 270 MDSSS-KPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGG 328

Query: 341 LELGQC---------------------------------VFDHMDKRDVVSWNSLISSYG 367
           +E+ Q                                  +FD +  RDVV+W ++I  Y 
Sbjct: 329 VEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYV 388

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
            +G+   A+++F+ MI  G  P+  +  ++L   S    ++ G+ +  S  +      SV
Sbjct: 389 QNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGN-ASSV 447

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
                ++ +  ++  + +A  +   +  +     W S++ +   H   E A    +R+ E
Sbjct: 448 SVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLE 507



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 149/317 (47%), Gaps = 74/317 (23%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV------------ 253
           GK IHA +++ G +  V +M  L++ YA+ G +  A  VF +M VK+V            
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 254 -------------------VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
                              VSW+AMI  Y + G    A+ +FREM+  S D+ P   T+ 
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMV--SDDVPPTQFTLT 149

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK-------------- 340
           +VL +CAA+  L  G+ +H ++++ GL S + V ++L+ MYA+ G               
Sbjct: 150 NVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLK 209

Query: 341 -----------------LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
                            ++L Q  F+ M +RDVVSWN++IS Y  HG+  +A+ IF +M+
Sbjct: 210 STSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKML 269

Query: 384 YHGVS-PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA----CMVDLLG 438
               S P   +  S L AC++   ++ GK +       H+IR   + +      ++ +  
Sbjct: 270 MDSSSKPDKFTLASALSACANLENLKLGKQI-----HAHIIRTEFDTFGAVGNALISMYS 324

Query: 439 RANKLEEAAKIIEDLRI 455
           ++  +E A KIIE   I
Sbjct: 325 KSGGVEIAQKIIEQSMI 341



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 115/257 (44%), Gaps = 33/257 (12%)

Query: 54  ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           EL +S+ K+G            P P  +T   +L   +   SL     +H+  T +G   
Sbjct: 398 ELFRSMIKEG------------PKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNAS 445

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTR-RRTIYVWNALFRALTLAGRGEEVLELYRRM 172
              +   LI +Y+   S++DAR VF+    +R    W ++  AL   G GEE L L+ RM
Sbjct: 446 SVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERM 505

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT----- 227
                GI+ D  TY  VL AC        L++ G+  + +++++ +     I+ T     
Sbjct: 506 --LENGIKPDHITYVGVLSACTH----VGLVEQGRSYY-NLMQNAHK----IIPTPSHYA 554

Query: 228 -LIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMIA-CYARNGMAFEALELFREMIMESH 284
            +ID++ R G +  A      M ++ +V++W +++A C     +    +   R +++E  
Sbjct: 555 CMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPE 614

Query: 285 DLCPNSVTMVSVLQACA 301
           +    S  + +V  AC 
Sbjct: 615 NSGAYS-ALANVYSACG 630


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/618 (36%), Positives = 361/618 (58%), Gaps = 41/618 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  +L SC    +  +   +H H+   G D D ++ T LI++Y     ++DA  V
Sbjct: 132 PNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 191

Query: 138 FDKTRRRTI--------------YV-----------------WNALFRALTLAGRGEEVL 166
           FDK+  R +              Y+                 WNA+       G  +E L
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++ M    T +R D  T   V+ AC  S      ++ G+++H  +  HG+   + I+ 
Sbjct: 252 ELFKDM--MKTNVRPDESTMVTVVSACAQSGS----IELGRQVHLWIDDHGFGSNLKIVN 305

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LID+Y++ G +  A  +F ++  K+V+SW+ +I  Y    +  EAL LF+EM+      
Sbjct: 306 ALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-- 363

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELG 344
            PN VTM+S+L ACA L A++ G+ IH YI +R  G+ +   + ++L+ MYA+CG +E  
Sbjct: 364 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 423

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
             VF+ +  + + SWN++I  + +HG    +  +F  M   G+ P  I+FV +L ACSH+
Sbjct: 424 HQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+++ G+ +F +M +++ + P +EHY CM+DLLG +   +EA ++I  + +EP   +W S
Sbjct: 484 GMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCS 543

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +C++H NVEL E  ++ L ++EP N G+YVLL+++YA+A  W+EV + + LL  +G+
Sbjct: 544 LLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGM 603

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +KVPG S IE+   ++ F+  D+FHP+  +++ +L  +   +++ G+VP T  VL +++ 
Sbjct: 604 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEE 663

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           E KE  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH  TK ISK   +EI+ RD
Sbjct: 664 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 723

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHFR+GVCSC DYW
Sbjct: 724 RTRFHHFRDGVCSCNDYW 741



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 199/387 (51%), Gaps = 43/387 (11%)

Query: 102 VHSHLTDNGFDQDPFLVTKLIN---VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           +H+ +   G     + ++KLI    +  HF+ +  A  VF   +   + +WN +FR   L
Sbjct: 52  IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHAL 111

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +      L+LY  M     G+  + +T+ +VLK+C  S       K G++IH  VL+ G 
Sbjct: 112 SSDPVSALKLYVCM--ISLGLLPNSYTFPFVLKSCAKSKA----FKEGQQIHGHVLKLGC 165

Query: 219 NGIVHIMTTLIDMYARFG----------------CVMYAGFV---------------FSQ 247
           +  +++ T+LI MY + G                 V Y   +               F +
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDE 225

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           + VK+VVSW+AMI+ YA  G   EALELF++M+    ++ P+  TMV+V+ ACA   ++E
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT--NVRPDESTMVTVVSACAQSGSIE 283

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+ +H +I   G  S L +V+AL+ +Y++CG+LE    +F+ +  +DV+SWN+LI  Y 
Sbjct: 284 LGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYT 343

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE-HMIRPS 426
                 +A+ +F+EM+  G +P+ ++ +S+L AC+H G ++ G+ +   + K    +  +
Sbjct: 344 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNA 403

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDL 453
                 ++D+  +   +E A ++   +
Sbjct: 404 SSLRTSLIDMYAKCGDIEAAHQVFNSI 430



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 171/402 (42%), Gaps = 49/402 (12%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + GN ++AL    D++     P + T   ++ +C    S+     VH  + D
Sbjct: 235 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD 294

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GF  +  +V  LI++YS    ++ A  +F++   + +  WN L    T     +E L L
Sbjct: 295 HGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLL 354

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH--GYNGIVHIMT 226
           ++ M  +G     +  T   +L AC         +  G+ IH  + +   G      + T
Sbjct: 355 FQEMLRSGE--TPNDVTMLSILPACAH----LGAIDIGRWIHVYIDKRLKGVTNASSLRT 408

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +LIDMYA+ G +  A  VF+ +  K++ SW+AMI  +A +G A  + +LF    M    +
Sbjct: 409 SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSR--MRKIGI 466

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+ +T V +L AC+    L+ G+    +I R            +   Y    KLE   C
Sbjct: 467 QPDDITFVGLLSACSHSGMLDLGR----HIFR-----------TMTQDYKMTPKLEHYGC 511

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           + D +                  G+ G   +  + +    + P  + + S+L AC   G 
Sbjct: 512 MIDLL------------------GHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGN 553

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
           VE G+   E++ K     P    Y  + ++   A +  E AK
Sbjct: 554 VELGESFAENLIKIEPENPG--SYVLLSNIYASAGRWNEVAK 593



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV---TMYARCGKLELGQCVFDH 350
           +S+L  C  L +L   ++IH  +++ GL +    +S L+    +      L     VF  
Sbjct: 37  LSLLHNCKTLQSL---RIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKT 93

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           + + +++ WN++   + +      A++++  MI  G+ P+  +F  VL +C+ +   +EG
Sbjct: 94  IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEG 153

Query: 411 KML 413
           + +
Sbjct: 154 QQI 156


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/590 (37%), Positives = 360/590 (61%), Gaps = 14/590 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD---- 133
           P + T   ++ +C +   L     +HS    +G   D  +   LIN+Y+   SVD     
Sbjct: 269 PDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKC-SVDGSMCA 327

Query: 134 ARHVFDKTRRRTIYVWNALFRA-LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           AR +FD+     ++ W A+    +   G  EE L+L+R M    T +  + FT++  LKA
Sbjct: 328 ARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGM--ILTHVIPNHFTFSSTLKA 385

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
           C       + L+ G+++    ++ G++ +  +  +LI MYAR G +  A   F  +  KN
Sbjct: 386 CA----NLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKN 441

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           ++S++ +I  YA+N  + EALELF E+  E   +  ++ T  S+L   A++  + +G+ I
Sbjct: 442 LISYNTVIDAYAKNLNSEEALELFNEI--EDQGMGASAFTFASLLSGAASIGTIGKGEQI 499

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           H  +++ GL     V +AL++MY+RCG +E    VF+ M+ R+V+SW S+I+ +  HG+ 
Sbjct: 500 HARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFA 559

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +A+++F +M+  GV P+ +++++VL ACSH GLV EG   F+SM  EH + P +EHYAC
Sbjct: 560 TQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYAC 619

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
           MVD+LGR+  L EA + I  +  +    VW + LG+CR+H N+EL + A+K + E EP +
Sbjct: 620 MVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHD 679

Query: 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQF 552
              Y+LL+++YA+   WDEV  +++ ++ + L K  G S +EV+ K++ F   D  HP+ 
Sbjct: 680 PAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKA 739

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
            +++  L NLS ++K+ GYVP    VL+D++ E+KE+++  HSEK+AVAFGLI+TSK + 
Sbjct: 740 AEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKP 799

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IR+ KNLR+C DCHS  K+IS    +EI+VRD NRFHH ++G CSC +YW
Sbjct: 800 IRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 113/427 (26%), Positives = 190/427 (44%), Gaps = 33/427 (7%)

Query: 42  TTPTSLSSRNKNELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLS 97
           T P  L+ R    LIQ +   G L +A+  L        +P   TY L L  C    S  
Sbjct: 29  TNPNPLTGR----LIQEI-NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFD 83

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD-KTRRRTIYVWNALFRAL 156
               VH  LT +    D   +  LI++YS     + A  +F      R +  W+A+    
Sbjct: 84  IGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCF 143

Query: 157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
                G   L  +  M     G   + + +    +AC  +      +  G  I   V++ 
Sbjct: 144 ANNNMGFRALLTFVDM--IENGYYPNEYCFAAATRACSTA----EFVSVGDSIFGFVVKT 197

Query: 217 GY-NGIVHIMTTLIDMYARFGCVMYAGF-VFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           GY    V +   LIDM+ +    + + F VF +M  +N V+W+ MI    + G A EA++
Sbjct: 198 GYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAID 257

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           LF EMI+  ++  P+  T+  V+ ACA +  L  G+ +H   +R GL     V   L+ M
Sbjct: 258 LFLEMILSGYE--PDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINM 315

Query: 335 YARC---GKLELGQCVFDHMDKRDVVSWNSLISSY-GVHGYGGKAIQIFKEMIYHGVSPS 390
           YA+C   G +   + +FD +   +V SW ++I+ Y    GY  +A+ +F+ MI   V P+
Sbjct: 316 YAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPN 375

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC----MVDLLGRANKLEEA 446
             +F S L AC++   +  G+ +F      H ++       C    ++ +  R+ ++++A
Sbjct: 376 HFTFSSTLKACANLAALRIGEQVF-----THAVKLGFSSVNCVANSLISMYARSGRIDDA 430

Query: 447 AKIIEDL 453
            K  + L
Sbjct: 431 RKAFDIL 437


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/624 (37%), Positives = 359/624 (57%), Gaps = 12/624 (1%)

Query: 43  TPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSD 98
           TPT+ ++   N +I+ +  +     A+ + +        P   T+  +L +C   N    
Sbjct: 63  TPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHL 122

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            + +HS +   GFD D F+ T ++  YS    + DA  VFD    + +  W  +      
Sbjct: 123 GVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIE 182

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G+  E ++L+R +    +G+R D F    VL+AC         L+ G+ I   +   G 
Sbjct: 183 FGKFREAVDLFRGL--LESGLRPDGFVIVRVLRACAR----LGDLESGRWIDRCMRECGL 236

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
           +  V + T+L+DMY + G +  A FVF  M  K++V WSAMI  YA NG+  EA+ELF E
Sbjct: 237 SRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFE 296

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M     ++ P+   MV  L +CA+L ALE G    G +      S   + ++L+  YA+C
Sbjct: 297 M--RKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKC 354

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G +E    V+  M ++D V +N++IS   ++G  G A  +F +M   G+ P+  +FV +L
Sbjct: 355 GSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLL 414

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
             C+HAGLV++G+  F SM  +  + P++EHY CMVDLL RA  L+EA  +I+ + ++  
Sbjct: 415 CGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKAN 474

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             VWGSLLG CR+H   +LAE   K+L ELEP N+G+YVLL+++Y+A+  WDE ++++  
Sbjct: 475 VIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRST 534

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
           +  +G+QK+PG S +EV   ++ F+  D  HP  ++++  L +L  ++KE GY P T+ V
Sbjct: 535 VNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFV 594

Query: 579 LYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANK 638
           L+D++ EEKE  +  HSEKLAVAF LI+T     IR+ KNLR+C DCH   K ISK   +
Sbjct: 595 LFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGR 654

Query: 639 EILVRDVNRFHHFRNGVCSCGDYW 662
           EI++RD NRFH F +G CSC DYW
Sbjct: 655 EIVIRDNNRFHCFSDGACSCRDYW 678


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/608 (38%), Positives = 369/608 (60%), Gaps = 28/608 (4%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           L+  L +QG L Q   V         H Y   + +C H N      N  S LTD      
Sbjct: 119 LLPLLAQQGALAQGTSV---------HAY--CIRACLHPNR-----NSKSKLTDG----- 157

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             L T L+++Y+   S+  AR VFD    R    W+AL     L  R  +   L++ M  
Sbjct: 158 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 217

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
            G    S   +    L+AC +       L+ G+++HA + + G +  +    +L+ MYA+
Sbjct: 218 QGLCFLSPT-SIASALRACAS----LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 272

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A  +F +MAVK+ VS+SA+++ Y +NG A EA  +F++M  ++ ++ P++ TMV
Sbjct: 273 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKM--QACNVEPDAATMV 330

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           S++ AC+ LAAL+ G+  HG ++ RGL S   + +AL+ MYA+CG+++L + VF+ M  R
Sbjct: 331 SLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR 390

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           D+VSWN++I+ YG+HG G +A  +F EM   G  P  ++F+ +L ACSH+GLV EGK  F
Sbjct: 391 DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWF 450

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
             M   + + P +EHY CMVDLL R   L+EA + I+ + +    +VW +LLG+CR++ N
Sbjct: 451 HVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKN 510

Query: 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
           ++L ++ S+ + EL P   GN+VLL+++Y+AA  +DE   V+ + + +G +K PG S IE
Sbjct: 511 IDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 570

Query: 535 VKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGH 594
           +   +++FV  D+ HPQ  +++  L N+   +K+ GY P T  VL DL+ EEKE+ ++ H
Sbjct: 571 INGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICH 630

Query: 595 SEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
           SEKLA+A+G+++ S+ +TI +TKNLR+C DCH+  K IS    + I+VRD NRFHHF+NG
Sbjct: 631 SEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNG 690

Query: 655 VCSCGDYW 662
            CSCGD+W
Sbjct: 691 QCSCGDFW 698



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 167/349 (47%), Gaps = 25/349 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSD---ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           P  +T+   L +C+   +L+D      +H H    G   D F+ T L+++Y     + DA
Sbjct: 8   PNNYTFPFALKACS---ALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDA 64

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
            H+F     R +  WNA+       G     +     M      +R +  T   +L    
Sbjct: 65  AHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLA 124

Query: 195 ASSCGFSLLKHGKEIHASVLRHGY-----------NGIVHIMTTLIDMYARFGCVMYAGF 243
                   L  G  +HA  +R              +G++ + T L+DMYA+ G ++YA  
Sbjct: 125 QQGA----LAQGTSVHAYCIRACLHPNRNSKSKLTDGVL-LGTALLDMYAKCGSLLYARR 179

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT-MVSVLQACAA 302
           VF  M  +N V+WSA+I  +       +A  LF+ M+ +   LC  S T + S L+ACA+
Sbjct: 180 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG--LCFLSPTSIASALRACAS 237

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           L  L  G+ +H  + + G+ + L   ++L++MYA+ G ++    +FD M  +D VS+++L
Sbjct: 238 LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSAL 297

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           +S Y  +G   +A  +FK+M    V P   + VS++ ACSH   ++ G+
Sbjct: 298 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 346



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 149/292 (51%), Gaps = 22/292 (7%)

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKH--GKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
           +  + +T+ + LKAC A      L  H  G+ IH   +  G    + + T L+DMY +  
Sbjct: 6   VAPNNYTFPFALKACSA------LADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCA 59

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
           C+  A  +F+ M  +++V+W+AM+A YA +GM   A+     M M+ H L PN+ T+V++
Sbjct: 60  CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 119

Query: 297 LQACAALAALEQGKMIHGYILRRGL-----------DSILPVVSALVTMYARCGKLELGQ 345
           L   A   AL QG  +H Y +R  L           D +L + +AL+ MYA+CG L   +
Sbjct: 120 LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVL-LGTALLDMYAKCGSLLYAR 178

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PSPISFVSVLGACSHA 404
            VFD M  R+ V+W++LI  + +     +A  +FK M+  G+   SP S  S L AC+  
Sbjct: 179 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASL 238

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
             +  G+ L   + K   +   +     ++ +  +A  +++A  + +++ ++
Sbjct: 239 DHLRMGEQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK 289



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 2/132 (1%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           M  H + PN+ T    L+AC+ALA    G+ IH + +  GL + L V +AL+ MY +C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ--IFKEMIYHGVSPSPISFVSVL 398
           L     +F  M  RD+V+WN++++ Y  HG    A+   +  +M  H + P+  + V++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 399 GACSHAGLVEEG 410
              +  G + +G
Sbjct: 121 PLLAQQGALAQG 132


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/628 (36%), Positives = 357/628 (56%), Gaps = 23/628 (3%)

Query: 36   VSLNSSTTPTSLSSRNKN--ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHH 93
            +S NS  +  S +  N    EL   +  QG    ++ +LS+ P   Q  Y          
Sbjct: 484  ISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFA------- 536

Query: 94   NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
                    VH +    G   +  L   L+++YS+         +F    ++ +  W A+ 
Sbjct: 537  -----GRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMI 591

Query: 154  RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
             +   AG  ++V  L + M     GIR D F  T  L A      G   LK GK +H   
Sbjct: 592  TSYMRAGLFDKVAGLLQEM--VLDGIRPDVFAVTSALHAFA----GDESLKQGKSVHGYT 645

Query: 214  LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
            +R+G   ++ +   L++MY +   V  A  +F ++  K+V+SW+ +I  Y+RN    E+ 
Sbjct: 646  IRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESF 705

Query: 274  ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
             LF +M+++     PN+VTM  +L A A++++LE+G+ IH Y LRRG        +ALV 
Sbjct: 706  SLFSDMLLQFR---PNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVD 762

Query: 334  MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
            MY +CG L + + +FD + K++++SW  +I+ YG+HG+G  AI +F++M   G+ P   S
Sbjct: 763  MYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAAS 822

Query: 394  FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            F ++L AC H+GL  EG+  F++M+KE+ I P ++HY C+VDLL R   L+EA + IE +
Sbjct: 823  FSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESM 882

Query: 454  RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
             IEP   +W SLL  CRIH NV+LAE+ + ++F+LEP N G YVLLA++YA A+ W+ VK
Sbjct: 883  PIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVK 942

Query: 514  RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
            ++K  +  RGL++  G S IEV+ K++ F++ +  HP + ++   L +++  M+++G+ P
Sbjct: 943  KLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQEGHDP 1002

Query: 574  QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
            + K  L   D    +  + GHS KLAVAFG++N  +G  IR+TKN ++C  CH   KFIS
Sbjct: 1003 KKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKNSKVCSHCHEAAKFIS 1062

Query: 634  KFANKEILVRDVNRFHHFRNGVCSCGDY 661
            K  N+EI++RD +RFH F  G CSC  Y
Sbjct: 1063 KMCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 190/399 (47%), Gaps = 30/399 (7%)

Query: 37  SLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSL 96
           S ++   P+   S + N  IQ LC+ G+L  AL +L  +      +Y +++  C    SL
Sbjct: 54  SWSTKNPPSRALSSDVNLRIQRLCQAGDLAGALRLLGSDGGVDVRSYCMVVQLCGEERSL 113

Query: 97  SDALNVHSHLTDNGF----DQDPFLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWN 150
             A   H+ +  +       +   L  +L+  Y     + +AR VFD    +   + VW 
Sbjct: 114 EAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWT 173

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
           +L  A   AG  +E + L+R+M     G+  D    + VLK CV+S      L  G+ IH
Sbjct: 174 SLMSAYAKAGDFQEAVSLFRQMQ--CCGVSPDAHAVSCVLK-CVSS---LGSLTEGEVIH 227

Query: 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAF 270
             + + G      +   LI +Y+R G +  A  VF  M  ++ +SW++MI     NG   
Sbjct: 228 GLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHG 287

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR----GLDSILP 326
            A++LF +M  +  ++  +SVT++SVL ACA L     GK +HGY ++     GLDS+  
Sbjct: 288 TAVDLFSKMWSQGTEI--SSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQS 345

Query: 327 VV------SALVTMYARCGKLELGQCVFDHM-DKRDVVSWNSLISSYGVHGYGGKAIQIF 379
            +      S LV MY +CG +   + VFD M  K +V  WN ++  Y   G   +++ +F
Sbjct: 346 GIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLF 405

Query: 380 KEMIYHGVSPSPISFVSVLG-----ACSHAGLVEEGKML 413
            +M   G++P   +   +L      +C+  GLV  G ++
Sbjct: 406 VQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIV 444



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 176/378 (46%), Gaps = 27/378 (7%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDA 99
           P +   R    L+ +  K G+ ++A+ +         +P  H    +L   +   SL++ 
Sbjct: 164 PQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEG 223

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
             +H  L   G  Q   +   LI VYS    ++DA  VFD    R    WN++       
Sbjct: 224 EVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSN 283

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY- 218
           G     ++L+ +M   GT I S   T   VL AC  +  G+ L+  GK +H   ++ G  
Sbjct: 284 GWHGTAVDLFSKMWSQGTEISS--VTVLSVLPAC--AGLGYGLI--GKAVHGYSVKSGLL 337

Query: 219 -------NGI--VHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMIACYARNGM 268
                  +GI    + + L+ MY + G +  A  VF  M+ K NV  W+ ++  YA+ G 
Sbjct: 338 WGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGE 397

Query: 269 AFEALELFREMIMESHDL--CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
             E+L LF +M    H+L   P+   +  +L+    L+    G + HGYI++ G  +   
Sbjct: 398 FEESLSLFVQM----HELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCA 453

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           V +AL++ YA+   +     VF+ M ++D +SWNS+IS    +G   +AI++F  M   G
Sbjct: 454 VCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQG 513

Query: 387 VSPSPISFVSVLGACSHA 404
                ++ +SVL AC+ +
Sbjct: 514 QELDSVTLLSVLPACAQS 531


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/616 (37%), Positives = 365/616 (59%), Gaps = 15/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I +   +G++ +A ++L        E    + T   +L +C     L     +H + 
Sbjct: 318 NTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYS 377

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             + F Q   L    I  Y+   +++ A  VF     +T+  WNAL       G   + L
Sbjct: 378 FRHCF-QHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKAL 436

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            L  +M  T +G + D FT + +L AC         L++GKEIH  VLR+G      + T
Sbjct: 437 HLLFQM--TYSGQQPDWFTISSLLLACAH----LKSLQYGKEIHGYVLRNGLETDFFVGT 490

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +L+  Y   G    A  +F +M  KN+VSW+AMI+ Y++NG+ +E+L LFR+ + E   +
Sbjct: 491 SLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEG--I 548

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
             + + +VSV  AC+ L+AL  GK  HGY+L+        V  +++ MYA+ G ++  + 
Sbjct: 549 QSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRK 608

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VFD +  ++V SWN++I ++G+HG+G +AI++++ M   G  P   +++ +L AC HAGL
Sbjct: 609 VFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGL 668

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           VEEG   F+ M+  ++I P +EHYAC++D+L RA +L++A +++ ++  E   ++W SLL
Sbjct: 669 VEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLL 728

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            SCR    +E+ E+ +K+L ELEP  A NYVLL+++YA    WD V+RV+++++  GLQK
Sbjct: 729 RSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQK 788

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S IEV  ++YSFV  D   P+  ++  +   L   + E GY P T  VL+++  EE
Sbjct: 789 DAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEE 848

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           K  I+ GHSEKLA++FGL+ T+KG T+RI KNLR+C DCH+  K ISK   +EI+VRD  
Sbjct: 849 KIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNK 908

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHFR+G+CSC DYW
Sbjct: 909 RFHHFRDGLCSCCDYW 924



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 185/356 (51%), Gaps = 16/356 (4%)

Query: 56  IQSLCKQGNLRQALDVLSIEPN-------PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           I +LC+  NL  AL ++              +    LLL +C +   +     +H  ++D
Sbjct: 12  IAALCETDNLTTALILIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLHKFVSD 71

Query: 109 NG-FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
           +  +  D  L T+LI +Y+   S  D+R VFD    + +  WNAL    T  G   +V++
Sbjct: 72  STHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVK 131

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           ++  +  + T  + D FT+  V+KAC     G   ++ G+ IH  V++ G    V +   
Sbjct: 132 VFMDLV-SDTDFQPDNFTFPSVIKAC----GGILDVRLGEVIHGMVIKMGLVLDVFVGNA 186

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+ MY + G V  A  VF  M   N+VSW++MI  ++ NG + ++ +L  EM+ E   L 
Sbjct: 187 LVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGE-EGLL 245

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+ VT+V++L  CA    ++ G  IHG  ++ GL   + V +A+V MY++CG L   Q  
Sbjct: 246 PDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMS 305

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG--VSPSPISFVSVLGAC 401
           F   + ++VVSWN++IS++ + G   +A  + +EM   G  +  + ++ ++VL AC
Sbjct: 306 FVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 178/386 (46%), Gaps = 14/386 (3%)

Query: 34  CCVSLNSSTTPTSLSSRNK---NELIQSLCKQG----NLRQALDVLS-IEPNPTQHTYEL 85
           C   L+S     ++ ++N    N L+    + G     ++  +D++S  +  P   T+  
Sbjct: 92  CGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPS 151

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           ++ +C     +     +H  +   G   D F+   L+ +Y    +VD+A  VFD      
Sbjct: 152 VIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETN 211

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  WN++  A +  G   +  +L   M G   G+  D  T   +L  C     G   +  
Sbjct: 212 LVSWNSMICAFSENGFSRDSFDLLMEMLGE-EGLLPDVVTVVTILPVCA----GEGEVDI 266

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           G  IH   ++ G +  V +   ++ MY++ G +  A   F +   KNVVSW+ MI+ ++ 
Sbjct: 267 GMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSL 326

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G   EA  L +EM ++  ++  N VT+++VL AC     L   K +HGY  R     + 
Sbjct: 327 EGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHV- 385

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            + +A +  YA+CG L   + VF  +  + V SWN+LI  +  +G   KA+ +  +M Y 
Sbjct: 386 ELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYS 445

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGK 411
           G  P   +  S+L AC+H   ++ GK
Sbjct: 446 GQQPDWFTISSLLLACAHLKSLQYGK 471



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 113/186 (60%), Gaps = 2/186 (1%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           T LI MYA  G  + +  VF  M  KN++ W+A+++ Y RNG+  + +++F +++ ++ D
Sbjct: 83  TRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDT-D 141

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
             P++ T  SV++AC  +  +  G++IHG +++ GL   + V +ALV MY +CG ++   
Sbjct: 142 FQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAM 201

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSHA 404
            VFD M + ++VSWNS+I ++  +G+   +  +  EM+   G+ P  ++ V++L  C+  
Sbjct: 202 KVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGE 261

Query: 405 GLVEEG 410
           G V+ G
Sbjct: 262 GEVDIG 267


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/608 (38%), Positives = 369/608 (60%), Gaps = 28/608 (4%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           L+  L +QG L Q   V         H Y   + +C H N      N  S LTD      
Sbjct: 234 LLPLLAQQGALAQGTSV---------HAY--CIRACLHPNR-----NSKSKLTDG----- 272

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             L T L+++Y+   S+  AR VFD    R    W+AL     L  R  +   L++ M  
Sbjct: 273 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 332

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
            G    S   +    L+AC +       L+ G+++HA + + G +  +    +L+ MYA+
Sbjct: 333 QGLCFLSPT-SIASALRACAS----LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 387

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A  +F +MAVK+ VS+SA+++ Y +NG A EA  +F++M  ++ ++ P++ TMV
Sbjct: 388 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKM--QACNVEPDAATMV 445

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           S++ AC+ LAAL+ G+  HG ++ RGL S   + +AL+ MYA+CG+++L + VF+ M  R
Sbjct: 446 SLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR 505

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           D+VSWN++I+ YG+HG G +A  +F EM   G  P  ++F+ +L ACSH+GLV EGK  F
Sbjct: 506 DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWF 565

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
             M   + + P +EHY CMVDLL R   L+EA + I+ + +    +VW +LLG+CR++ N
Sbjct: 566 HVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKN 625

Query: 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
           ++L ++ S+ + EL P   GN+VLL+++Y+AA  +DE   V+ + + +G +K PG S IE
Sbjct: 626 IDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 685

Query: 535 VKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGH 594
           +   +++FV  D+ HPQ  +++  L N+   +K+ GY P T  VL DL+ EEKE+ ++ H
Sbjct: 686 INGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICH 745

Query: 595 SEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
           SEKLA+A+G+++ S+ +TI +TKNLR+C DCH+  K IS    + I+VRD NRFHHF+NG
Sbjct: 746 SEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNG 805

Query: 655 VCSCGDYW 662
            CSCGD+W
Sbjct: 806 QCSCGDFW 813



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 170/339 (50%), Gaps = 26/339 (7%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAG--RGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
           A H+FD+     +  +N L RA + +      + L LYRRM      +  + +T+ + LK
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRM--LRHRVAPNNYTFPFALK 133

Query: 192 ACVASSCGFSLLKH--GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           AC A      L  H  G+ IH   +  G    + + T L+DMY +  C+  A  +F+ M 
Sbjct: 134 ACSA------LADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMP 187

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            +++V+W+AM+A YA +GM   A+     M M+ H L PN+ T+V++L   A   AL QG
Sbjct: 188 ARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG 247

Query: 310 KMIHGYILRRGL-----------DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
             +H Y +R  L           D +L + +AL+ MYA+CG L   + VFD M  R+ V+
Sbjct: 248 TSVHAYCIRACLHPNRNSKSKLTDGVL-LGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PSPISFVSVLGACSHAGLVEEGKMLFESM 417
           W++LI  + +     +A  +FK M+  G+   SP S  S L AC+    +  G+ L   +
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALL 366

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
            K   +   +     ++ +  +A  +++A  + +++ ++
Sbjct: 367 AKSG-VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK 404



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 167/349 (47%), Gaps = 25/349 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSD---ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           P  +T+   L +C+   +L+D      +H H    G   D F+ T L+++Y     + DA
Sbjct: 123 PNNYTFPFALKACS---ALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDA 179

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
            H+F     R +  WNA+       G     +     M      +R +  T   +L    
Sbjct: 180 AHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLA 239

Query: 195 ASSCGFSLLKHGKEIHASVLRHGY-----------NGIVHIMTTLIDMYARFGCVMYAGF 243
                   L  G  +HA  +R              +G++ + T L+DMYA+ G ++YA  
Sbjct: 240 QQGA----LAQGTSVHAYCIRACLHPNRNSKSKLTDGVL-LGTALLDMYAKCGSLLYARR 294

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT-MVSVLQACAA 302
           VF  M  +N V+WSA+I  +       +A  LF+ M+ +   LC  S T + S L+ACA+
Sbjct: 295 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG--LCFLSPTSIASALRACAS 352

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           L  L  G+ +H  + + G+ + L   ++L++MYA+ G ++    +FD M  +D VS+++L
Sbjct: 353 LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSAL 412

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           +S Y  +G   +A  +FK+M    V P   + VS++ ACSH   ++ G+
Sbjct: 413 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 461


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/599 (37%), Positives = 364/599 (60%), Gaps = 14/599 (2%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
           LD++     P + T   ++ +C +   L     +HS    +G   D  +   LIN+Y+  
Sbjct: 260 LDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKC 319

Query: 129 DSVDD----ARHVFDKTRRRTIYVWNALFRA-LTLAGRGEEVLELYRRMNGTGTGIRSDR 183
            SVD     AR +FD+     ++ W A+    +   G  EE L+L+R M    T +  + 
Sbjct: 320 -SVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGM--ILTHVIPNH 376

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           FT++  LKAC       + L+ G+++    ++ G++ +  +  +LI MYAR G +  A  
Sbjct: 377 FTFSSTLKACA----NLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARK 432

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
            F  +  KN++S++ +I  YA+N  + EALELF E+  E   +  ++ T  S+L   A++
Sbjct: 433 AFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEI--EDQGMGASAFTFASLLSGAASI 490

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
             + +G+ IH  +++ GL     V +AL++MY+RCG +E    VF+ M+ R+V+SW S+I
Sbjct: 491 GTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSII 550

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           + +  HG+  +A+++F +M+  GV P+ +++++VL ACSH GLV EG   F+SM  EH +
Sbjct: 551 TGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGV 610

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
            P +EHYAC+VD+LGR+  L EA + I  +  +    VW + LG+CR+H N+EL + A+K
Sbjct: 611 IPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAK 670

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
            + E EP +   Y+LL+++YA+   WDEV  +++ ++ + L K  G S +EV+ K++ F 
Sbjct: 671 MIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFY 730

Query: 544 SVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFG 603
             D  HP+  +++  L NLS ++K+ GYVP    VL+D++ E+KE+++  HSEK+AVAFG
Sbjct: 731 VGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFG 790

Query: 604 LINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           LI+TSK + IR+ KNLR+C DCHS  K+IS    +EI+VRD NRFHH ++G CSC +YW
Sbjct: 791 LISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 189/427 (44%), Gaps = 33/427 (7%)

Query: 42  TTPTSLSSRNKNELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLS 97
           T P  L+ R    LIQ +   G L +A+  L        +P   TY L L  C    S  
Sbjct: 29  TNPNPLTGR----LIQEI-NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFD 83

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD-KTRRRTIYVWNALFRAL 156
               VH  LT +    D   +  LI++YS     + A  +F      R +  W+A+    
Sbjct: 84  IGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCF 143

Query: 157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
                G   L  +  M     G   + + +    +AC  +      +  G  I   V++ 
Sbjct: 144 ANNNMGFRALLTFVDM--IENGYYPNEYCFAAATRACSTA----EFVSVGDSIFGFVIKT 197

Query: 217 GY-NGIVHIMTTLIDMYARFGCVMYAGF-VFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           GY    V +   LIDM+ +    + + F VF +M  +N V+W+ MI    + G A EA++
Sbjct: 198 GYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAID 257

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           LF +MI   ++  P+  T+  V+ ACA +  L  G+ +H   +R GL     V   L+ M
Sbjct: 258 LFLDMIFSGYE--PDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINM 315

Query: 335 YARC---GKLELGQCVFDHMDKRDVVSWNSLISSY-GVHGYGGKAIQIFKEMIYHGVSPS 390
           YA+C   G +   + +FD +   +V SW ++I+ Y    GY  +A+ +F+ MI   V P+
Sbjct: 316 YAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPN 375

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC----MVDLLGRANKLEEA 446
             +F S L AC++   +  G+ +F      H ++       C    ++ +  R+ ++++A
Sbjct: 376 HFTFSSTLKACANLAALRIGEQVF-----THAVKLGFSSVNCVANSLISMYARSGRIDDA 430

Query: 447 AKIIEDL 453
            K  + L
Sbjct: 431 RKAFDIL 437


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/609 (36%), Positives = 362/609 (59%), Gaps = 10/609 (1%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           L+Q+      L    D+ +    P Q +   L+ +     +L     VH++   NG D +
Sbjct: 324 LVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSN 383

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             +   L+++Y+    V    H F+    + +  W  +           E + L+R++  
Sbjct: 384 MQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQV 443

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
            G  +  D      VL+AC     G       +EIH  V +     I+ +   ++++Y  
Sbjct: 444 KGMDV--DPMMIGSVLRAC----SGLKSRNFIREIHGYVFKRDLADIM-LQNAIVNVYGE 496

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G + YA   F  +  K++VSW++MI C   NG+  EALELF  +  +  ++ P+S+ ++
Sbjct: 497 VGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSL--KQTNIQPDSIAII 554

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           S L A A L++L++GK IHG+++R+G     P+ S+LV MYA CG +E  + +F  + +R
Sbjct: 555 SALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQR 614

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           D++ W S+I++ G+HG G KAI +FK+M    V P  I+F+++L ACSH+GL+ EGK  F
Sbjct: 615 DLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFF 674

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
           E M+  + + P  EHYACMVDLL R+N LEEA   + ++ I+P  ++W +LLG+C IH N
Sbjct: 675 EIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSN 734

Query: 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
            EL E A+K L + +  N+G Y L+++++AA   W++V+ V+  ++  GL+K PG S IE
Sbjct: 735 KELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIE 794

Query: 535 VKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK-GYVPQTKVVLYDLDAEEKERIVLG 593
           V  K+++F++ D+ HPQ + ++  L   +  +++K GY+ QTK V +++  EEK +++ G
Sbjct: 795 VDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYG 854

Query: 594 HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
           HSE+LA+ +GL+ T KG  IRITKNLR+C+DCH+F K  S+ + + ++VRD NRFHHF  
Sbjct: 855 HSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFER 914

Query: 654 GVCSCGDYW 662
           G+CSCGD+W
Sbjct: 915 GLCSCGDFW 923



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 191/374 (51%), Gaps = 23/374 (6%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPT----QHTYELLLLSCTHHNSLSDA 99
           P S+++ NK  L  +        Q+L +LS  P  T    +H + LLL  C    +L   
Sbjct: 13  PISVNTLNKGTLKPAF-------QSLTLLSTHPLATPSRLEHAHSLLLDLCVAAKALPQG 65

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
             +H+ L  +      FL TKL+ +Y    S+ DA  VFD+   RTI+ WNAL  A   +
Sbjct: 66  QQLHALLLKSHLS--AFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSS 123

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
           G+  E +ELY+ M   G  I  D  T+  VLKAC A   G S L  G EIH   ++ GY 
Sbjct: 124 GKYLEAIELYKDMRVLGVAI--DACTFPSVLKACGA--LGESRL--GAEIHGVAVKCGYG 177

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFS--QMAVKNVVSWSAMIACYARNGMAFEALELFR 277
             V +   LI MY + G +  A  +F    M  ++ VSW+++I+ +   G   EAL LFR
Sbjct: 178 EFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFR 237

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
            M  +   +  N+ T V+ LQ     + ++ G  IHG +L+    + + V +AL+ MYA+
Sbjct: 238 RM--QEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAK 295

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           CG++E    VF+ M  RD VSWN+L+S    +     A+  F++M   G  P  +S +++
Sbjct: 296 CGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNL 355

Query: 398 LGACSHAGLVEEGK 411
           + A   +G + +GK
Sbjct: 356 IAASGRSGNLLKGK 369



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 143/271 (52%), Gaps = 11/271 (4%)

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
            ++ +L  CVA+      L  G+++HA +L+   +    + T L+ MY + G +  A  V
Sbjct: 48  AHSLLLDLCVAAKA----LPQGQQLHALLLKSHLSAF--LATKLVLMYGKCGSLRDAVKV 101

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F +M+ + + SW+A++  +  +G   EA+EL+++M +    +  ++ T  SVL+AC AL 
Sbjct: 102 FDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLG--VAIDACTFPSVLKACGALG 159

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD--HMDKRDVVSWNSL 362
               G  IHG  ++ G    + V +AL+ MY +CG L   + +FD   M+K D VSWNS+
Sbjct: 160 ESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSI 219

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           IS++   G   +A+ +F+ M   GV+ +  +FV+ L        V+ G  +  ++ K + 
Sbjct: 220 ISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNH 279

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
               V     ++ +  +  ++E+A ++ E +
Sbjct: 280 F-ADVYVANALIAMYAKCGRMEDAGRVFESM 309


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/542 (39%), Positives = 341/542 (62%), Gaps = 16/542 (2%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           +I  Y+    +D+AR +FD++  + ++ W A+          EE  EL+ +M        
Sbjct: 256 IITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM-------- 307

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            +R   ++   A +A       ++  KE+   +        V    T+I  YA+ G +  
Sbjct: 308 PERNEVSW--NAMLAGYVQGERMEMAKELFDVMPCRN----VSTWNTMITGYAQCGKISE 361

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  +F +M  ++ VSW+AMIA Y+++G +FEAL LF +M  E   L  N  +  S L  C
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRL--NRSSFSSALSTC 419

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           A + ALE GK +HG +++ G ++   V +AL+ MY +CG +E    +F  M  +D+VSWN
Sbjct: 420 ADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWN 479

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           ++I+ Y  HG+G  A++ F+ M   G+ P   + V+VL ACSH GLV++G+  F +M ++
Sbjct: 480 TMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQD 539

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           + + P+ +HYACMVDLLGRA  LE+A  +++++  EP   +WG+LLG+ R+H N ELAE 
Sbjct: 540 YGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAET 599

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
           A+ ++F +EP N+G YVLL+++YA++  W +V +++  +  +G++KVPG S IE++ K +
Sbjct: 600 AADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTH 659

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
           +F   DEFHP+ +++ A L  L   MK+ GYV +T VVL+D++ EEKER+V  HSE+LAV
Sbjct: 660 TFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAV 719

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           A+G++  S G  IR+ KNLR+CEDCH+  K++++   + I++RD NRFHHF++G CSCGD
Sbjct: 720 AYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGD 779

Query: 661 YW 662
           YW
Sbjct: 780 YW 781



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 167/372 (44%), Gaps = 40/372 (10%)

Query: 48  SSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           SS + N +I    + G    A  +    P     ++ +++     + +L  A  +   + 
Sbjct: 94  SSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMP 153

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
           +    +D      +++ Y+    VDDAR VFD+   +    WNAL  A     + EE   
Sbjct: 154 E----RDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACM 209

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN-GIVHIMT 226
           L++            R  +  V   C+    GF  +K  K + A       N   V    
Sbjct: 210 LFK-----------SRENWALVSWNCLLG--GF--VKKKKIVEARQFFDSMNVRDVVSWN 254

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           T+I  YA+ G +  A  +F +  V++V +W+AM++ Y +N M  EA ELF +M  E +++
Sbjct: 255 TIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP-ERNEV 313

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP-----VVSALVTMYARCGKL 341
             N           A LA   QG+ +    + + L  ++P       + ++T YA+CGK+
Sbjct: 314 SWN-----------AMLAGYVQGERME---MAKELFDVMPCRNVSTWNTMITGYAQCGKI 359

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
              + +FD M KRD VSW ++I+ Y   G+  +A+++F +M   G   +  SF S L  C
Sbjct: 360 SEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTC 419

Query: 402 SHAGLVEEGKML 413
           +    +E GK L
Sbjct: 420 ADVVALELGKQL 431



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 148/353 (41%), Gaps = 67/353 (18%)

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRM--------NGTGTG-IRSDRFTYTYVLKACVAS 196
           I  WN    +    GR  E L +++RM        NG  +G +R+  F     L      
Sbjct: 64  IKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKL------ 117

Query: 197 SCGFSLLKHGKEIHASVLRHGY---------NGIVHIM--------TTLIDMYARFGCVM 239
              F  +     +  +V+  GY           +  IM         T++  YA+ GCV 
Sbjct: 118 ---FDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVD 174

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
            A  VF +M  KN VSW+A+++ Y +N    EA  LF+           +      V   
Sbjct: 175 DARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFK-----------SRENWALVSWN 223

Query: 300 CAALAALEQGKMIHGYILRRGLDS--ILPVVS--ALVTMYARCGKLELGQCVFDHMDKRD 355
           C     +++ K++     R+  DS  +  VVS   ++T YA+ GK++  + +FD    +D
Sbjct: 224 CLLGGFVKKKKIVEA---RQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQD 280

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           V +W +++S Y  +    +A ++F +M       + +S+ ++L        +E  K LF+
Sbjct: 281 VFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNAMLAGYVQGERMEMAKELFD 336

Query: 416 SMRKEHMIRP--SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
            M       P  +V  +  M+    +  K+ EA  + + +  +  P  W +++
Sbjct: 337 VM-------PCRNVSTWNTMITGYAQCGKISEAKNLFDKM-PKRDPVSWAAMI 381



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 123/293 (41%), Gaps = 33/293 (11%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           ++  W+  I+ Y R G   EAL +F+ M   S      SV+   ++         E  + 
Sbjct: 63  DIKEWNVAISSYMRTGRCNEALRVFKRMPRWS------SVSYNGMISGYLRNGEFELARK 116

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +   +  R L S     + ++  Y R   L   + +F+ M +RDV SWN+++S Y  +G 
Sbjct: 117 LFDEMPERDLVSW----NVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGC 172

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
              A  +F  M       + +S+ ++L A      +EE  MLF+S     ++      + 
Sbjct: 173 VDDARSVFDRM----PEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV-----SWN 223

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           C++    +  K+ EA +  + + +      W +++        ++ A    ++LF+  P 
Sbjct: 224 CLLGGFVKKKKIVEARQFFDSMNVRDVVS-WNTIITGYAQSGKIDEA----RQLFDESP- 277

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGL-QKVPGRSRIEVKRKMYSFV 543
                  + DV+    M     + + + EAR L  K+P R+ +     +  +V
Sbjct: 278 -------VQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYV 323



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 2/115 (1%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
            + ++   L +C    +L     +H  L   G++   F+   L+ +Y    S+++A  +F
Sbjct: 408 NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLF 467

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
            +   + I  WN +    +  G GE  L  +  M     G++ D  T   VL AC
Sbjct: 468 KEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMK--REGLKPDDATMVAVLSAC 520


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/614 (38%), Positives = 364/614 (59%), Gaps = 14/614 (2%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTH-HNSLSD---ALNVHSHLTDNG 110
           +I+S  + G L +ALD+L           E+ ++S TH    L+D      +H+++  NG
Sbjct: 196 MIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNG 255

Query: 111 --FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
                   L T LI++Y   +++  AR VFD   + +I  W A+  A        E + L
Sbjct: 256 KCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRL 315

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M   G G+  +  T   ++K C  +      L+ GK +HA  LR+G+   + + T  
Sbjct: 316 FVKM--LGEGMFPNEITMLSLVKECGTAGA----LELGKLLHAFTLRNGFTLSLVLATAF 369

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY + G V  A  VF     K+++ WSAMI+ YA+N    EA ++F  M      + P
Sbjct: 370 IDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMT--GCGIRP 427

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N  TMVS+L  CA   +LE GK IH YI ++G+   + + ++ V MYA CG ++    +F
Sbjct: 428 NERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLF 487

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
                RD+  WN++IS + +HG+G  A+++F+EM   GV+P+ I+F+  L ACSH+GL++
Sbjct: 488 AEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQ 547

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EGK LF  M  E    P VEHY CMVDLLGRA  L+EA ++I+ + + P   V+GS L +
Sbjct: 548 EGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAA 607

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C++H N++L E A+K+   LEP  +G  VL++++YA+A+ W +V  ++R ++  G+ K P
Sbjct: 608 CKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEP 667

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S IEV   ++ F+  D  HP  ++++ ++  +  ++++ GY P    VL+++D E+K 
Sbjct: 668 GVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKV 727

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSEKLA+A+GLI+T+ G  IRI KNLR+C+DCH+ TK +SK   +EI+VRD NRF
Sbjct: 728 SALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRF 787

Query: 649 HHFRNGVCSCGDYW 662
           HHF+ G CSC DYW
Sbjct: 788 HHFKEGSCSCCDYW 801



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 201/393 (51%), Gaps = 26/393 (6%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH  +  NGF  D F+   LI +YS   S+  AR +FDK   + +  W+ + R+   +G 
Sbjct: 146 VHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGL 205

Query: 162 GEEVLELYR-----RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
            +E L+L R     R+  +  G+     + T+VL          + LK GK +HA V+R+
Sbjct: 206 LDEALDLLRDMHVMRVKPSEIGM----ISITHVLAE-------LADLKLGKAMHAYVMRN 254

Query: 217 GYNGI--VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           G  G   V + T LIDMY +   + YA  VF  ++  +++SW+AMIA Y       E + 
Sbjct: 255 GKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVR 314

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           LF +M+ E   + PN +TM+S+++ C    ALE GK++H + LR G    L + +A + M
Sbjct: 315 LFVKMLGEG--MFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDM 372

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y +CG +   + VFD    +D++ W+++ISSY  +    +A  IF  M   G+ P+  + 
Sbjct: 373 YGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTM 432

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           VS+L  C+ AG +E GK +   + K+  I+  +      VD+      ++ A ++  +  
Sbjct: 433 VSLLMICAKAGSLEMGKWIHSYIDKQG-IKGDMILKTSFVDMYANCGDIDTAHRLFAE-A 490

Query: 455 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
            +    +W +++    +H + E    A+  LFE
Sbjct: 491 TDRDISMWNAMISGFAMHGHGE----AALELFE 519



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 168/309 (54%), Gaps = 16/309 (5%)

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           +  ++Y  M GT T +  D F    VLKAC    C       G+E+H  V+++G++G V 
Sbjct: 107 DAAKIYAYMRGTDTEV--DNFVIPSVLKAC----CLIPSFLLGQEVHGFVVKNGFHGDVF 160

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM-IME 282
           +   LI MY+  G +  A  +F ++  K+VVSWS MI  Y R+G+  EAL+L R+M +M 
Sbjct: 161 VCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMR 220

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARCGK 340
              + P+ + M+S+    A LA L+ GK +H Y++R G    S +P+ +AL+ MY +C  
Sbjct: 221 ---VKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCEN 277

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L   + VFD + K  ++SW ++I++Y       + +++F +M+  G+ P+ I+ +S++  
Sbjct: 278 LAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKE 337

Query: 401 CSHAGLVEEGKMLFE-SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           C  AG +E GK+L   ++R    +  S+      +D+ G+   +  A  + +  +     
Sbjct: 338 CGTAGALELGKLLHAFTLRNGFTL--SLVLATAFIDMYGKCGDVRSARSVFDSFK-SKDL 394

Query: 460 KVWGSLLGS 468
            +W +++ S
Sbjct: 395 MMWSAMISS 403



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           N    S +I  Y +N    +A +++    M   D   ++  + SVL+AC  + +   G+ 
Sbjct: 88  NAAIHSFLITSYIKNNCPADAAKIYA--YMRGTDTEVDNFVIPSVLKACCLIPSFLLGQE 145

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +HG++++ G    + V +AL+ MY+  G L L + +FD ++ +DVVSW+++I SY   G 
Sbjct: 146 VHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGL 205

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE-SMRKEHMIRPSVEHY 430
             +A+ + ++M    V PS I  +S+    +    ++ GK +    MR     +  V   
Sbjct: 206 LDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLC 265

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
             ++D+  +   L  A ++ + L  +     W +++ +  IHCN
Sbjct: 266 TALIDMYVKCENLAYARRVFDGLS-KASIISWTAMIAA-YIHCN 307


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/616 (36%), Positives = 356/616 (57%), Gaps = 39/616 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P++ T   ++++ +     +     H  +   GF  + F+ + L+++Y+    V DA+  
Sbjct: 138 PSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRA 197

Query: 138 FDKTRRRTIYVWNALFRAL-------------------------------TLAGRGEEVL 166
           FD+   + + ++N +   L                               T  G   E L
Sbjct: 198 FDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEAL 257

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           E++RRM   G  I  D++T+  +L AC A     S L+ GK+IHA ++R  Y+  V + +
Sbjct: 258 EIFRRMRFQGIAI--DQYTFGSILTACGA----LSALEQGKQIHAYIIRTRYDDNVFVGS 311

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+DMY++   +  A  VF +M  KN++SW+A+I  Y +NG + EA+ +F EM  +  D 
Sbjct: 312 ALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID- 370

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+  T+ SV+ +CA LA+LE+G   H   L  GL   + V +ALVT+Y +CG +E    
Sbjct: 371 -PDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHR 429

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +FD M   D VSW +L+S Y   G   + I +F++M+  GV P  ++F+ VL ACS AG 
Sbjct: 430 LFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGF 489

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           VE+G+  F SM+K+H I P  +HY CM+DL  R+ KL+EA + I+ + + P    WG+LL
Sbjct: 490 VEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLL 549

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +CR+  ++E+ + A++ L E++P N  +YVLL  ++AA   W+EV +++R +  R ++K
Sbjct: 550 SACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKK 609

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S I+ K K++ F + D+ HP  + ++  L  L+++M E+GY P    VL+D+   +
Sbjct: 610 EPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTD 669

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           K  +V  HSEKLA+AFGLI   +   IRI KNLR+C DCH+ TKFISK   ++ILVRD  
Sbjct: 670 KVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAV 729

Query: 647 RFHHFRNGVCSCGDYW 662
           RFH F +GVCSCGD+W
Sbjct: 730 RFHKFSDGVCSCGDFW 745



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 183/378 (48%), Gaps = 42/378 (11%)

Query: 111 FDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FD  P    F    L++  +H   + D   +F    +R I  +NA+    +  G   + +
Sbjct: 64  FDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAV 123

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            +Y  +    + +R  R T + ++ A  AS+ G   L  GK+ H  +LR G+     + +
Sbjct: 124 RVYLALLQADSSVRPSRITMSTMVMA--ASALGDRAL--GKQFHCQILRLGFGANAFVGS 179

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVV-------------------------------S 255
            L+DMYA+   V  A   F ++  KNVV                               +
Sbjct: 180 PLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSIT 239

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+ M+  + +NG+  EALE+FR M  +   +  +  T  S+L AC AL+ALEQGK IH Y
Sbjct: 240 WTTMVTGFTQNGLESEALEIFRRMRFQG--IAIDQYTFGSILTACGALSALEQGKQIHAY 297

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           I+R   D  + V SALV MY++C  ++L + VF  M  ++++SW +LI  YG +G   +A
Sbjct: 298 IIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEA 357

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           +++F EM   G+ P   +  SV+ +C++   +EEG   F  +     +   +     +V 
Sbjct: 358 VRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVT 416

Query: 436 LLGRANKLEEAAKIIEDL 453
           L G+   +E+A ++ +++
Sbjct: 417 LYGKCGSIEDAHRLFDEM 434



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 115/268 (42%), Gaps = 18/268 (6%)

Query: 57  QSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPF 116
           Q+ C +  +R   ++     +P  +T   ++ SC +  SL +    H     +G      
Sbjct: 350 QNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYIT 409

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           +   L+ +Y    S++DA  +FD+        W AL       GR +E ++L+ +M    
Sbjct: 410 VSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKM--LA 467

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKE-IHASVLRHGYNGIVHIMTTLIDMYARF 235
            G++ D  T+  VL AC  S  GF  ++ G+   H+    HG   I    T +ID+Y+R 
Sbjct: 468 KGVKPDGVTFIGVLSAC--SRAGF--VEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRS 523

Query: 236 GCVMYAGFVFSQMAV-KNVVSWSAMI-ACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           G +  A     QM +  + + W  ++ AC  R  M  E  +   E ++E     P S  +
Sbjct: 524 GKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDM--EIGKWAAENLLEIDPQNPASYVL 581

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGL 321
           +  + A        +G+      LRRG+
Sbjct: 582 LCSMHAA-------KGQWNEVAQLRRGM 602


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/576 (36%), Positives = 356/576 (61%), Gaps = 13/576 (2%)

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
           +C     L     VH +L  +GF+ D      LI++Y+    +  A+ VFD T+ +    
Sbjct: 331 ACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVT 390

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           WN+L    T +G  +E LE ++ M      +     + T+VL   + S    + +  G+ 
Sbjct: 391 WNSLINGYTQSGYYKEGLESFKMMK-----MERKPDSVTFVLLLSIFSQ--LADINQGRG 443

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           IH  V++ G+   + I  +L+D+YA+ G +     VFS M+  +++SW+ +IA    + +
Sbjct: 444 IHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIA----SSV 499

Query: 269 AFEALELFREMI--MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
            F+   +  +MI  M +  L P+  T++ +L  C+ LA   QGK IHGYI + G +S +P
Sbjct: 500 HFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVP 559

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           + +AL+ MY++CG LE    VF +M ++DVV+W +LIS++G++G G KA++ F++M   G
Sbjct: 560 IGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSG 619

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           V P  ++F++ + ACSH+G+V+EG   F+ M+ ++ + P +EHYAC+VDLL R+  L +A
Sbjct: 620 VLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQA 679

Query: 447 AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
            + I  + ++P   +WG+LL +CR   N  +A+R SK++ EL   + G YVL++++YA  
Sbjct: 680 EEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATL 739

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
             WD+VK V+  ++ +GL+K PG S IE+++++Y F + D+   Q++++  LL  L   M
Sbjct: 740 GKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLM 799

Query: 567 KEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
            ++GYV   +  L+D++ ++K  ++ GHSE+LA+AFGL+NT  G  + + KNLR+C DCH
Sbjct: 800 AKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCH 859

Query: 627 SFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + TK+I+K   +EILVRD NRFH F++G CSCGD+W
Sbjct: 860 TVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 195/380 (51%), Gaps = 15/380 (3%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCT 91
           VS+  S +PT+ +    N +I++L   G   QAL    ++   +  P   T+  ++ SC 
Sbjct: 74  VSVFRSISPTN-NVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCA 132

Query: 92  HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNA 151
               L     VH H  + GF+ D ++   LI++YS F  +D+AR+VF++   R    WN+
Sbjct: 133 RILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNS 192

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           L       G  E+ L++Y +   TG  +  D FT + VL AC +       +K G  +H 
Sbjct: 193 LISGYCSNGFWEDALDMYHKFRMTG--MVPDCFTMSSVLLACGS----LMAVKEGVAVHG 246

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
            + + G  G V I   L+ MY +F  +  A  VFS+MAVK+ V+W+ MI  YA+ G    
Sbjct: 247 VIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEA 306

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           +++LF +MI       P+ +++ S ++AC     L+ GK +H Y++  G +      + L
Sbjct: 307 SVKLFMDMI---DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNIL 363

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MYA+CG L   Q VFD    +D V+WNSLI+ Y   GY  + ++ FK M+     P  
Sbjct: 364 IDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFK-MMKMERKPDS 422

Query: 392 ISFVSVLGACSHAGLVEEGK 411
           ++FV +L   S    + +G+
Sbjct: 423 VTFVLLLSIFSQLADINQGR 442



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 197/402 (49%), Gaps = 31/402 (7%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALN------VHSHLTDNGFDQDPFLVTKLINVYSHFD 129
           P P+Q      LL      +LS A N      VHS +  +G         KLI+ Y+   
Sbjct: 14  PEPSQEFLRSSLL-----KTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVK 68

Query: 130 SVDDARHVFDK-TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
               +  VF   +    +Y+WN++ RALT  G   + L  Y  M      ++ D FT+  
Sbjct: 69  DPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKK--LQPDAFTFPS 126

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           V+ +C         L+ G  +H   +  G+   ++I   LIDMY+RF  +  A +VF +M
Sbjct: 127 VINSCAR----ILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEM 182

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
           + ++ VSW+++I+ Y  NG   +AL+++ +  M    + P+  TM SVL AC +L A+++
Sbjct: 183 SNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTG--MVPDCFTMSSVLLACGSLMAVKE 240

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           G  +HG I + G+   + + + L++MY +  +L   + VF  M  +D V+WN++I  Y  
Sbjct: 241 GVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQ 300

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
            G    ++++F +MI  G  P  +S  S + AC  +G ++ GK +      +++I    E
Sbjct: 301 LGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFV-----HKYLIGSGFE 354

Query: 429 --HYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
               AC  ++D+  +   L  A ++ +  + +     W SL+
Sbjct: 355 CDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSV-TWNSLI 395



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 154/337 (45%), Gaps = 15/337 (4%)

Query: 53  NELIQSLCKQGNLRQALD---VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDN 109
           N LI    + G  ++ L+   ++ +E  P   T+ LLL   +    ++    +H  +   
Sbjct: 392 NSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKF 451

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           GF+ +  +   L++VY+    +DD   VF       I  WN +  +   +   ++    +
Sbjct: 452 GFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIAS---SVHFDDCTVGF 508

Query: 170 RRMNGTGT-GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +N   T G+  D  T   +L  C       ++ + GKEIH  + + G+   V I   L
Sbjct: 509 QMINEMRTEGLMPDEATVLGILPMCSL----LAVRRQGKEIHGYIFKSGFESNVPIGNAL 564

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I+MY++ G +     VF  M  K+VV+W+A+I+ +   G   +AL+ F++  ME   + P
Sbjct: 565 IEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQD--MELSGVLP 622

Query: 289 NSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           +SV  ++ + AC+    +++G +          L+  +   + +V + AR G L   +  
Sbjct: 623 DSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEF 682

Query: 348 FDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
              M  K D   W +L+S+    G    A ++ K+++
Sbjct: 683 ILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKIL 719


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/635 (35%), Positives = 370/635 (58%), Gaps = 39/635 (6%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N ++    + G +  A  V    P     ++  LL +   ++ L +A  +       G  
Sbjct: 156 NTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF------GSR 209

Query: 113 QDPFLVTK--LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           ++  LV+   L+  +     + +AR  FD  + R +  WN +       G  +E  +L+ 
Sbjct: 210 ENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLF- 268

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCG------FSLLKHGKEIHASVLRHGY------ 218
                      D FT+T ++   + +         F  +    E+  + +  GY      
Sbjct: 269 -----DESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERV 323

Query: 219 ---NGIVHIM--------TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
                +  +M         T+I  YA+ G +  A  +F +M  ++ VSW+AMIA Y+++G
Sbjct: 324 EMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSG 383

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
            ++EAL LF  ++ME      N  +  S L  CA + ALE GK +HG +++ G ++   V
Sbjct: 384 HSYEALRLF--VLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFV 441

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
            +AL+ MY +CG +E    +F  M  +D+VSWN++I+ Y  HG+G +A++ F+ M   G+
Sbjct: 442 GNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGL 501

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
            P   + V+VL ACSH GLV++G+  F +M +++ +RP+ +HYACMVDLLGRA  LEEA 
Sbjct: 502 KPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAH 561

Query: 448 KIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507
            +++++  EP   +WG+LLG+ R+H N ELAE A+ ++F +EP N+G YVLL+++YA++ 
Sbjct: 562 NLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSG 621

Query: 508 MWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK 567
            W +V +++  +  +G++KVPG S IE++ K ++F   DEFHP+ +++ A L +L   MK
Sbjct: 622 RWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMK 681

Query: 568 EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHS 627
           + GYV +T VVL+D++ EEKER+V  HSE+LAVA+G++  S G  IR+ KNLR+CEDCH+
Sbjct: 682 KAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHN 741

Query: 628 FTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             K+++K   + I++RD NRFHHF++G CSCGDYW
Sbjct: 742 AIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 37/219 (16%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
             +I  Y R G    A  +F +M  +++VSW+ MI  Y RN    +A ELF    M   D
Sbjct: 94  NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFER--MPERD 151

Query: 286 LC---------------------------PNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           +C                            N V+  ++L A    + LE+  ++ G    
Sbjct: 152 VCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSREN 211

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
             L S     + L+  + +  K+   +  FD M  RDVVSWN++I+ Y  +G   +A Q+
Sbjct: 212 WALVSW----NCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQL 267

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           F E   H V     ++ +++       +VEE + LF+ M
Sbjct: 268 FDESPVHDV----FTWTAMVSGYIQNRMVEEARELFDRM 302



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 128/293 (43%), Gaps = 33/293 (11%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           ++  W+  I+ Y R G   EAL +F+ M   S      SV+  +++         E  +M
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRMPRWS------SVSYNAMISGYLRNGEFELARM 111

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +   +  R L S     + ++  Y R   L   + +F+ M +RDV SWN+++S Y  +G 
Sbjct: 112 LFDEMPERDLVSW----NVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGC 167

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
              A ++F  M       + +S+ ++L A      +EE  +LF S     ++      + 
Sbjct: 168 VDDARRVFDRM----PEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALV-----SWN 218

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           C++    +  K+ EA +  + +++      W +++       N E+ E  +++LF+  P 
Sbjct: 219 CLLGGFVKKKKIVEARQFFDSMKVRDVVS-WNTIITG--YAQNGEIDE--ARQLFDESPV 273

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGL-QKVPGRSRIEVKRKMYSFV 543
           +        DV+    M     + + + EAR L  ++P R+ +     +  +V
Sbjct: 274 H--------DVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYV 318


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 361/611 (59%), Gaps = 8/611 (1%)

Query: 53  NELIQSLCKQGNLRQALDVL-SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF 111
           N +I +  + G+  +A+ +   ++  P+  T+  +L +C++   L     +H+ ++  G 
Sbjct: 193 NAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGT 252

Query: 112 DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR 171
           + D  L   L+ +Y+    +DDA  +F +  RR +  W+A+  A       +E +E Y +
Sbjct: 253 ELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSK 312

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           M   G  +R + +T+  VL AC +       L+ G+ +H  +L +GY   +   T L+D+
Sbjct: 313 MQLEG--VRPNYYTFASVLLACAS----VGDLRAGRAVHDQILGNGYKITLVNGTALVDL 366

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           Y  +G +  A  +F Q+  ++   W+ +I  Y++ G     LEL+REM   +  +    +
Sbjct: 367 YTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREM-KNTTKVPATKI 425

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
               V+ ACA+L A    +  H  I   G+ S   + ++LV MY+R G LE  + VFD M
Sbjct: 426 IYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKM 485

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             RD ++W +LI+ Y  HG  G A+ ++KEM   G  PS ++F+ VL ACSHAGL E+GK
Sbjct: 486 SSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGK 545

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
            LF S++ ++ + P++ HY+C++DLL RA +L +A ++I  + +EP    W SLLG+ RI
Sbjct: 546 QLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRI 605

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H +V+ A  A+ ++ +L+P +  +YVLL++V+A       +  V+  + ARG++K  G S
Sbjct: 606 HKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSS 665

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            IEV  +++ F   D  HP+F+++ A L  LS ++KE GYVP+++ VL+D+  +EKE ++
Sbjct: 666 WIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLL 725

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
             HSEKLA+AFGLI T+ G T+RI   LR+C DCHS  KFIS  A +EI+VRD +RFH F
Sbjct: 726 RLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKF 785

Query: 652 RNGVCSCGDYW 662
           R+G CSCGDYW
Sbjct: 786 RDGQCSCGDYW 796



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 189/356 (53%), Gaps = 22/356 (6%)

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           FL  +++  Y    SV  AR  FD   R+  Y W ++  A    G     L+LY+RM+  
Sbjct: 59  FLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD-- 116

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI---VHIMTTLIDMY 232
              ++ +   YT VL AC +       L+ GK IH+ +   G  G+   V +  +L+ MY
Sbjct: 117 ---LQPNPVVYTTVLGACAS----IEALEEGKAIHSRI--SGTKGLKLDVILENSLLTMY 167

Query: 233 ARFGCVMYAGFVFSQMA-VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           A+ G +  A  +F +M+  ++V SW+AMIA YA++G   EA+ L+ +M     D+ P+  
Sbjct: 168 AKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM-----DVEPSVR 222

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T  SVL AC+ L  L+QG+ IH  I  RG +  L + +AL+TMYARC  L+    +F  +
Sbjct: 223 TFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRL 282

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
            +RDVVSW+++I+++       +AI+ + +M   GV P+  +F SVL AC+  G +  G+
Sbjct: 283 PRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGR 342

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
            + + +   +  + ++ +   +VDL      L+EA  + + +       +W  L+G
Sbjct: 343 AVHDQILG-NGYKITLVNGTALVDLYTSYGSLDEARSLFDQIE-NRDEGLWTVLIG 396



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 189/388 (48%), Gaps = 50/388 (12%)

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V +   ++  Y + G V  A   F  +A KN  SW +M+  YA+NG    AL+L++ M  
Sbjct: 58  VFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM-- 115

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL-RRGLDSILPVVSALVTMYARCGK 340
              DL PN V   +VL ACA++ ALE+GK IH  I   +GL   + + ++L+TMYA+CG 
Sbjct: 116 ---DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 341 LELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           LE  + +F+ M  +R V SWN++I++Y   G+  +AI+++++M    V PS  +F SVL 
Sbjct: 173 LEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLS 229

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           ACS+ GL+++G+ +  ++         +     ++ +  R   L++AAKI + L   P  
Sbjct: 230 ACSNLGLLDQGRKI-HALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRL---PRR 285

Query: 460 KV--WGSLLGS-CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516
            V  W +++ +        E  E  SK   +LE      Y   + + A A + D   R  
Sbjct: 286 DVVSWSAMIAAFAETDLFDEAIEFYSK--MQLEGVRPNYYTFASVLLACASVGD--LRAG 341

Query: 517 RLLEARGLQK------VPGRSRIEVKRKMYSFVSVDEFHPQFEQLH-------------- 556
           R +  + L        V G + +++     S+ S+DE    F+Q+               
Sbjct: 342 RAVHDQILGNGYKITLVNGTALVDL---YTSYGSLDEARSLFDQIENRDEGLWTVLIGGY 398

Query: 557 ------ALLINLSAEMKEKGYVPQTKVV 578
                   ++ L  EMK    VP TK++
Sbjct: 399 SKQGHRTGVLELYREMKNTTKVPATKII 426


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/644 (36%), Positives = 380/644 (59%), Gaps = 18/644 (2%)

Query: 27  PKPSSVCCCVSLNSSTTPTSLSSRNKNEL---IQSLCKQGNLRQALDVLSI-EPNPT--- 79
           PKPS++   V   +    T L  +  +EL   I+ L       +AL++  I E N     
Sbjct: 71  PKPSTIELNVGKEAQVNETQLR-KPSSELCGQIEKLVFFKRYHEALELFEILELNGAYDM 129

Query: 80  -QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
              TY+ L+ +C    S+     V +++ ++G D D +L  +++ ++     + DAR +F
Sbjct: 130 DSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLF 189

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           D+   + I  WN +   L  AG   E   L+  M    +   S  F         + +S 
Sbjct: 190 DEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFV------TMIRASA 243

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
           G  L+  G+++H+  L+ G  G V +   LIDMY++ G +  A  VF QM  K  V W++
Sbjct: 244 GLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNS 303

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           +IA YA +G + EAL ++ EM      +  ++ T   +++ CA LA+LE  K  H  ++R
Sbjct: 304 IIAGYALHGYSEEALSMYYEM--RDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVR 361

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
            G    +   +ALV +Y++ G++E  + VFD M  ++V+SWN+LI+ YG HG G +A+++
Sbjct: 362 HGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEM 421

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
           F+ M++ G+ P+ ++F++VL ACS++GL + G  +FESM ++H I+P   HYACM++LLG
Sbjct: 422 FERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLG 481

Query: 439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVL 498
           R   L+EA  +I+D   +P   +W +LL +CR+H N EL + A+++L+ + P    NYV+
Sbjct: 482 REGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVV 541

Query: 499 LADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHAL 558
           L ++Y  +   +E   V + L+ RGL+ +P  S IE+K++ Y F+S D+ H Q ++++  
Sbjct: 542 LLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQK 601

Query: 559 LINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKN 618
           L  L  E+ + GYVPQ K +L D+D E++ER++L HSEKLA+AFGLINTS    ++I ++
Sbjct: 602 LDELMLEISKHGYVPQXKFLLPDVD-EQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQS 660

Query: 619 LRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            R+C DCHS  K I+    +EI+VRD +RFHHF++G CSCGDYW
Sbjct: 661 HRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/658 (36%), Positives = 369/658 (56%), Gaps = 50/658 (7%)

Query: 53  NELIQSLCKQGNLRQALDV-------LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSH 105
           N ++ +  + G  R AL +        S++  P   T   +L +C    +L     VH  
Sbjct: 200 NSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGF 259

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
              NG   D F+   L+++Y+    +++A  VF+  +++ +  WNA+    +  G  +  
Sbjct: 260 SVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSA 319

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK--------------------- 204
           L L++ M      I+ D  T++ V+        GF  L                      
Sbjct: 320 LSLFKMMQEED--IKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLL 377

Query: 205 ----------HGKEIHASVLRHGYN-------GIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
                     +GK+ HA V+++  N         + ++  LIDMYA+      A  +F  
Sbjct: 378 SGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDS 437

Query: 248 M--AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
           +    KNVV+W+ MI  YA++G A +AL+LF ++  +   L PN+ T+   L ACA L  
Sbjct: 438 IEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGE 497

Query: 306 LEQGKMIHGYILRRGLDS-ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           L  G+ +H Y LR   +S +L V + L+ MY++ G ++  + VFD+M  R+VVSW SL++
Sbjct: 498 LRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMT 557

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
            YG+HG G +A+ +F +M   G +   I+F+ VL ACSH+G+V++G + F  M K   I 
Sbjct: 558 GYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGIT 617

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484
           P  EHYACMVDLLGRA +L EA ++I+++ +EP   VW +LL + RIH N+EL E A+ +
Sbjct: 618 PGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASK 677

Query: 485 LFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS 544
           L EL   N G+Y LL+++YA A  W +V R++ L++  G++K PG S I+ K+   +F  
Sbjct: 678 LTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFV 737

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604
            D  HP+ EQ++ LL++L   +K+ GYVPQT   L+D+D EEK  ++  HSEKLAVA+G+
Sbjct: 738 GDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGI 797

Query: 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + T+ G+ IRI KNLR+C DCHS   +IS   + EI++RD +RFHHF+ G CSC  YW
Sbjct: 798 LTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/499 (26%), Positives = 228/499 (45%), Gaps = 65/499 (13%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCT 91
           VSL     P+  +    N LI+   K G L   L     +  +   P  +T+  +L +C 
Sbjct: 79  VSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACG 138

Query: 92  HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT---IYV 148
              SL    +VH+ +  NG   + F+   ++ +Y    ++DDA  +FD+   R    I  
Sbjct: 139 EIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVS 198

Query: 149 WNALFRALTLAGRGEEVLELYRRM-NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGK 207
           WN++  A    G+    L +  RM N     +R D  T   +L AC +       L+HGK
Sbjct: 199 WNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFA----LQHGK 254

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM-------- 259
           ++H   +R+G    V +   L+ MYA+   +  A  VF  +  K+VVSW+AM        
Sbjct: 255 QVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIG 314

Query: 260 ---------------------------IACYARNGMAFEALELFREMIMESHDLCPNSVT 292
                                      IA YA+ G  FEAL++FR+  M+ + L PN VT
Sbjct: 315 SFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQ--MQLYGLEPNVVT 372

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGL-------DSILPVVSALVTMYARCGKLELGQ 345
           + S+L  CA++ AL  GK  H Y+++  L       +  L V++ L+ MYA+C    + +
Sbjct: 373 LASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVAR 432

Query: 346 CVFDHMDKRD--VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV--SVLGAC 401
            +FD ++ +D  VV+W  +I  Y  HG    A+++F ++     S  P +F     L AC
Sbjct: 433 SIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMAC 492

Query: 402 SHAGLVEEGKMLFE-SMRKEHMIRPSVEHYA-CMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           +  G +  G+ L   ++R E+     V +   C++D+  ++  ++ A  + +++++    
Sbjct: 493 ARLGELRLGRQLHAYALRNEN--ESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NV 549

Query: 460 KVWGSLLGSCRIHCNVELA 478
             W SL+    +H   E A
Sbjct: 550 VSWTSLMTGYGMHGRGEEA 568


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 361/611 (59%), Gaps = 8/611 (1%)

Query: 53  NELIQSLCKQGNLRQALDVL-SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF 111
           N +I +  + G+  +A+ +   ++  P+  T+  +L +C++   L     +H+ ++  G 
Sbjct: 192 NAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGT 251

Query: 112 DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR 171
           + D  L   L+ +Y+    +DDA  +F +  RR +  W+A+  A       +E +E Y +
Sbjct: 252 ELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSK 311

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           M   G  +R + +T+  VL AC +       L+ G+ +H  +L +GY   +   T L+D+
Sbjct: 312 MQLEG--VRPNYYTFASVLLACAS----VGDLRAGRAVHDQILGNGYKITLVNGTALVDL 365

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           Y  +G +  A  +F Q+  ++   W+ +I  Y++ G     LEL+REM   +  +    +
Sbjct: 366 YTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREM-KNTTKVPATKI 424

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
               V+ ACA+L A    +  H  I   G+ S   + ++LV MY+R G LE  + VFD M
Sbjct: 425 IYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKM 484

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             RD ++W +LI+ Y  HG  G A+ ++KEM   G  PS ++F+ VL ACSHAGL E+GK
Sbjct: 485 SSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGK 544

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
            LF S++ ++ + P++ HY+C++DLL RA +L +A ++I  + +EP    W SLLG+ RI
Sbjct: 545 QLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRI 604

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H +V+ A  A+ ++ +L+P +  +YVLL++V+A       +  V+  + ARG++K  G S
Sbjct: 605 HKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSS 664

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            IEV  +++ F   D  HP+F+++ A L  LS ++KE GYVP+++ VL+D+  +EKE ++
Sbjct: 665 WIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLL 724

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
             HSEKLA+AFGLI T+ G T+RI   LR+C DCHS  KFIS  A +EI+VRD +RFH F
Sbjct: 725 RLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKF 784

Query: 652 RNGVCSCGDYW 662
           R+G CSCGDYW
Sbjct: 785 RDGQCSCGDYW 795



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 217/455 (47%), Gaps = 21/455 (4%)

Query: 55  LIQSLCKQGNLRQALDV---LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDN-G 110
           ++ +  + G+ R ALD+   + ++PNP    Y  +L +C    +L +   +HS ++   G
Sbjct: 95  MLTAYAQNGHYRAALDLYKRMDLQPNPV--VYTTVLGACASIKALEEGKAIHSRISGTKG 152

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              D  L   L+ +Y+   S++DA+ +F++   R++  WNA+  A   +G  EE + LY 
Sbjct: 153 LKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYE 212

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M+     +     T+T VL AC        LL  G++IHA +   G    + +   L+ 
Sbjct: 213 DMD-----VEPSVRTFTSVLSAC----SNLGLLDQGRKIHALISSRGTELDLSLQNALLT 263

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MYAR  C+  A  +F ++  ++VVSWSAMIA +A   +  EA+E + +M +E   + PN 
Sbjct: 264 MYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEG--VRPNY 321

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T  SVL ACA++  L  G+ +H  IL  G    L   +ALV +Y   G L+  + +FD 
Sbjct: 322 YTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQ 381

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEE 409
           ++ RD   W  LI  Y   G+    +++++EM      P + I +  V+ AC+  G   +
Sbjct: 382 IENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFAD 441

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
            +     +  + MI   V     +V++  R   LE A ++ + +        W +L+   
Sbjct: 442 ARQAHSDIEADGMISDFV-LATSLVNMYSRWGNLESARQVFDKMS-SRDTLAWTTLIAGY 499

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
             H    LA    K + ELE         +  +YA
Sbjct: 500 AKHGEHGLALGLYKEM-ELEGAEPSELTFMVVLYA 533



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 189/355 (53%), Gaps = 21/355 (5%)

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           FL  +++  Y    SV  AR  FD   R+  Y W ++  A    G     L+LY+RM+  
Sbjct: 59  FLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD-- 116

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI---VHIMTTLIDMY 232
              ++ +   YT VL AC +       L+ GK IH+ +   G  G+   V +  +L+ MY
Sbjct: 117 ---LQPNPVVYTTVLGACAS----IKALEEGKAIHSRI--SGTKGLKLDVILENSLLTMY 167

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           A+ G +  A  +F +M+ ++V SW+AMIA YA++G   EA+ L+ +M     D+ P+  T
Sbjct: 168 AKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM-----DVEPSVRT 222

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
             SVL AC+ L  L+QG+ IH  I  RG +  L + +AL+TMYARC  L+    +F  + 
Sbjct: 223 FTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLP 282

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
           +RDVVSW+++I+++       +AI+ + +M   GV P+  +F SVL AC+  G +  G+ 
Sbjct: 283 RRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRA 342

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           + + +   +  + ++ +   +VDL      L+EA  + + +       +W  L+G
Sbjct: 343 VHDQILG-NGYKITLVNGTALVDLYTSYGSLDEARSLFDQIE-NRDEGLWTVLIG 395



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 188/387 (48%), Gaps = 49/387 (12%)

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V +   ++  Y + G V  A   F  +A KN  SW +M+  YA+NG    AL+L++ M  
Sbjct: 58  VFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM-- 115

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL-RRGLDSILPVVSALVTMYARCGK 340
              DL PN V   +VL ACA++ ALE+GK IH  I   +GL   + + ++L+TMYA+CG 
Sbjct: 116 ---DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           LE  + +F+ M  R V SWN++I++Y   G+  +AI+++++M    V PS  +F SVL A
Sbjct: 173 LEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSA 229

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
           CS+ GL+++G+ +  ++         +     ++ +  R   L++AAKI + L   P   
Sbjct: 230 CSNLGLLDQGRKI-HALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRL---PRRD 285

Query: 461 V--WGSLLGS-CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
           V  W +++ +        E  E  SK   +LE      Y   + + A A + D   R  R
Sbjct: 286 VVSWSAMIAAFAETDLFDEAIEFYSK--MQLEGVRPNYYTFASVLLACASVGD--LRAGR 341

Query: 518 LLEARGLQK------VPGRSRIEVKRKMYSFVSVDEFHPQFEQLH--------------- 556
            +  + L        V G + +++     S+ S+DE    F+Q+                
Sbjct: 342 AVHDQILGNGYKITLVNGTALVDL---YTSYGSLDEARSLFDQIENRDEGLWTVLIGGYS 398

Query: 557 -----ALLINLSAEMKEKGYVPQTKVV 578
                  ++ L  EMK    VP TK++
Sbjct: 399 KQGHRTGVLELYREMKNTTKVPATKII 425


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/607 (36%), Positives = 353/607 (58%), Gaps = 10/607 (1%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           I  L K  +L   +    + PN  + TY  LL +CT+   ++    +H      GF+ D 
Sbjct: 323 ISDLAKSFDLFCQMVAAGVRPN--EFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDM 380

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           ++   LI++YS +  +D AR + +    + +  W ++          +E LE ++ M   
Sbjct: 381 YVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLF 440

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
           G  I  D       + AC     G   ++ G++IH+ V   GY+  V I   L+++YAR 
Sbjct: 441 G--IWPDNIGLASAISACA----GIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARC 494

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G    A  +F  +  K+ ++W+ M++ +A++G+  EALE+F +M         N  T VS
Sbjct: 495 GRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKY--NVFTFVS 552

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
            + A A LA ++QGK IH  +++ G  S   V +AL+++Y +CG +E  +  F  M +R+
Sbjct: 553 SISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERN 612

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
            VSWN++I+S   HG+G +A+ +F +M   G+ P+ ++F+ VL ACSH GLVEEG   F+
Sbjct: 613 HVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFK 672

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
           SM  EH I P  +HYAC+VD+LGRA +L+ A K +E++ +     VW +LL +CR+H N+
Sbjct: 673 SMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNI 732

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           E+ E A+K L ELEP ++ +YVLL++ YA    W     V+++++ RG++K PGRS IEV
Sbjct: 733 EIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEV 792

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
           K  +++F   D  HP   Q++  L +L   + + GY+     + ++ + E+K+     HS
Sbjct: 793 KNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHS 852

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EKLAVAFGL++      +R+ KNLR+C DCH++ KF S+   +EI++RDV RFHHF NG 
Sbjct: 853 EKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGN 912

Query: 656 CSCGDYW 662
           CSCGD+W
Sbjct: 913 CSCGDFW 919



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 194/395 (49%), Gaps = 12/395 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +H+     G  +D      LI++Y+    V  AR VF++   R    W A+       G 
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
           GEE + LY +M+ +G  +    +  + VL AC  ++    L + G+ +HA V + G    
Sbjct: 124 GEEAVGLYHQMHCSG--VVPTPYVLSSVLSACTKAA----LFEQGRLVHAQVYKQGSCSE 177

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
             +   LI +Y RFG +  A  VFS+M   + V+++ +I+ +A+ G    ALE+F EM +
Sbjct: 178 TVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRL 237

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
                 P+ VT+ S+L ACA++  L +GK +H Y+L+ G+     +  +L+ +Y +CG +
Sbjct: 238 SG--WTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVI 295

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
                +F   D+ +VV WN ++ +YG      K+  +F +M+  GV P+  ++  +L  C
Sbjct: 296 VEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTC 355

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           ++AG +  G+ +   +  +      +     ++D+  +   L++A +I+E L  +     
Sbjct: 356 TYAGEINLGEQI-HLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVS- 413

Query: 462 WGSLLGSCRIH--CNVELAERASKRLFELEPTNAG 494
           W S++     H  C   L      +LF + P N G
Sbjct: 414 WTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIG 448



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 174/376 (46%), Gaps = 9/376 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PT +    +L +CT          VH+ +   G   +  +   LI +Y  F S+  A  V
Sbjct: 141 PTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERV 200

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F +        +N L       G GE  LE++  M  +G     D  T   +L AC +  
Sbjct: 201 FSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGW--TPDCVTIASLLAACAS-- 256

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  GK++H+ +L+ G +    I  +L+D+Y + G ++ A  +F      NVV W+
Sbjct: 257 --IGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWN 314

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            M+  Y +     ++ +LF +M+  +  + PN  T   +L+ C     +  G+ IH   +
Sbjct: 315 LMLVAYGQISDLAKSFDLFCQMV--AAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSI 372

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G +S + V   L+ MY++ G L+  + + + ++ +DVVSW S+I+ Y  H +  +A++
Sbjct: 373 KTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALE 432

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
            FK+M   G+ P  I   S + AC+    + +G+ +   +         V  +  +V+L 
Sbjct: 433 TFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGY-SADVSIWNALVNLY 491

Query: 438 GRANKLEEAAKIIEDL 453
            R  + +EA  + E +
Sbjct: 492 ARCGRSKEAFSLFEAI 507



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 44/352 (12%)

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           IHA  +  G          LID+YA+ G V  A  VF Q++ ++ VSW AM++ YARNG+
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
             EA+ L+ +M      + P    + SVL AC   A  EQG+++H  + ++G  S   V 
Sbjct: 124 GEEAVGLYHQM--HCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVG 181

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           +AL+ +Y R G L L + VF  M   D V++N+LIS +   G G  A++IF+EM   G +
Sbjct: 182 NALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWT 241

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
           P  ++  S+L AC+  G + +GK L   + K  M  P       ++DL  +   + EA +
Sbjct: 242 PDCVTIASLLAACASIGDLNKGKQLHSYLLKAGM-SPDYIIEGSLLDLYVKCGVIVEALE 300

Query: 449 I---------------------IEDLR-------------IEPGPKVWGSLLGSCRIHCN 474
           I                     I DL              + P    +  LL +C     
Sbjct: 301 IFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGE 360

Query: 475 VELAER----ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
           + L E+    + K  FE +   +G   +L D+Y+     D+ +R+  +LEA+
Sbjct: 361 INLGEQIHLLSIKTGFESDMYVSG---VLIDMYSKYGWLDKARRILEVLEAK 409


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/625 (36%), Positives = 351/625 (56%), Gaps = 39/625 (6%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
           L++L     P ++T+  L    T   +L     +H H+  +G   + F+ T L+ +Y   
Sbjct: 107 LEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLC 166

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
             +D AR VFD   +  +  WN +  A    G+ EE   L+  M      +     T   
Sbjct: 167 GQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQ--VLPTTVTLVL 224

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG------------ 236
           VL AC         L+ GK++H+ V        + +   +IDMYA  G            
Sbjct: 225 VLSAC----SKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSM 280

Query: 237 --------CVMYAGFV-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
                     + +GF            F +M  K+ VSW+AMI  Y R+    EALELFR
Sbjct: 281 NNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFR 340

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
            M  ++ ++ P+  TMVSVL ACA L ALE G+ I  YI R  + + L V +AL+ MY +
Sbjct: 341 NM--QATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFK 398

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           CG ++  + +F  M +RD  +W ++I    V+G+G KA+ +F  M+   + P  I+++ V
Sbjct: 399 CGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGV 458

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           L AC+H GLV++G+  F  M  +H I P++ HY C+VDLL RA +L+EA ++IE++ I+ 
Sbjct: 459 LSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKA 518

Query: 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
              VWG+LL  CR++   ++AE   K++ ELEP N   YVLL ++YAA   W++++ +++
Sbjct: 519 NSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQ 578

Query: 518 LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKV 577
           ++  +G++K PG S IE+  +++ FV+ D  HPQ + + A L  ++ ++K  GY P    
Sbjct: 579 MMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISE 638

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           V  D+  E+KE  V  HSEKLA+AFGLIN+  G TIRITKNLR+C DCH+  K +SK  N
Sbjct: 639 VFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYN 698

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +E++VRD  RFHHF++G+CSC DYW
Sbjct: 699 REVIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 195/413 (47%), Gaps = 51/413 (12%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDA 134
           +P  H    LL +C   + L     VH      G + +P L  +++       +     A
Sbjct: 15  SPPTHPLISLLETCESMDQLQ---QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYA 71

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R +FD+     +++WN + R  +     +  + LY  M     G++ DR+T+ ++ K   
Sbjct: 72  RRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEM--LRRGVKPDRYTFPFLFK--- 126

Query: 195 ASSCGFS---LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
               GF+    L++G+++H  VL+HG    V + T L+ MY   G +  A  VF      
Sbjct: 127 ----GFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKA 182

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +V++W+ +I+ Y + G   E+  LF  ++ME   + P +VT+V VL AC+ L  L  GK 
Sbjct: 183 DVITWNMIISAYNKVGKFEESRRLF--LVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKK 240

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG---- 367
           +H Y+    ++S L + +A++ MYA CG+++    +F  M+ RD++SW +++S +     
Sbjct: 241 VHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGE 300

Query: 368 ----------------------VHGY-----GGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
                                 + GY       +A+++F+ M    V P   + VSVL A
Sbjct: 301 IDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTA 360

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           C+H G +E G+ +  +    + I+  +     ++D+  +   +++A  I  ++
Sbjct: 361 CAHLGALELGEWI-RTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREM 412


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/616 (35%), Positives = 364/616 (59%), Gaps = 29/616 (4%)

Query: 47  LSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           L++R    L  ++C       A+  L        H Y+  +  C    +L +   VH+ +
Sbjct: 2   LTARGLRRLAAAVCLARRSASAVAALPGAGAARFHDYDDAITECVERRALREGRQVHARM 61

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
              G+    +L T+L+ +Y+   +++DAR+V D    R +  W A+    +   R ++  
Sbjct: 62  VAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNVVSWTAMISGYSQNERPDQAW 121

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL+  M   G                          +   K++HA  ++  +   + + +
Sbjct: 122 ELFIMMLRAG--------------------------IHQVKQVHAFAVKTNFELHMFVGS 155

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +L+DMYA+   +  A  VF  +  ++VVS++A+++ Y + G+  EAL+LFR  ++ +  +
Sbjct: 156 SLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLFR--LLYNEGM 213

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
             N VT  ++L A + L++++ GK +HG ILRR L   + + ++L+ MY++CGKL   + 
Sbjct: 214 QCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRR 273

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VFD M +R VVSWN+++  YG HG   + +Q+F+ M    V P  ++ ++VL   SH GL
Sbjct: 274 VFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMC-DEVKPDSVTLLAVLSGYSHGGL 332

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V+EG  +F+ + KE     + EHY C++DLLGR+ +L++A  +IE +  +P   +WGSLL
Sbjct: 333 VDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKMPFQPTRAIWGSLL 392

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+CR+H NV + E  +++L ++EP NAGNYV+L+++YAAA MW +V RV++L+  + + K
Sbjct: 393 GACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAGMWKDVFRVRKLMLKKTVIK 452

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PGRS + + + +++F S + FHP+ E ++A +  +   +K  G+VP    VL+D+D E+
Sbjct: 453 EPGRSWMILDKVIHTFHSCERFHPRKEDINAKIKEIYVAIKAAGFVPDLSCVLHDVDDEQ 512

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KER++LGHSEKLA+ FGL++T    TI++ KNLR+C DCH+F KF+SK   +EI +RD N
Sbjct: 513 KERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKN 572

Query: 647 RFHHFRNGVCSCGDYW 662
           RFH    G C+CGDYW
Sbjct: 573 RFHLITEGACTCGDYW 588


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/585 (38%), Positives = 351/585 (60%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T    L SC    + +   +VH       +D D F+   L+ +Y+    + DA+ +
Sbjct: 235 PNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRL 294

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++  +  +  W+ +      + R +E L+L+ RM  T   +  + FT+  VL+AC ASS
Sbjct: 295 FEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTS--VVPNNFTFASVLQAC-ASS 351

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
               L   GK+IH+ VL+ G N  V +   ++D+YA+ G +  +  +F ++  +N V+W+
Sbjct: 352 VSLDL---GKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWN 408

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            +I  Y + G    A+ LF  M+   HD+ P  VT  SVL+A A+LAALE G  IH   +
Sbjct: 409 TIIVGYVQLGDGERAMNLFTHML--EHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTI 466

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           +   +    V ++L+ MYA+CG++   +  FD M+KRD VSWN++I  Y +HG   +A+ 
Sbjct: 467 KTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALN 526

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F  M +    P+ ++FV VL ACS+AGL+ +G+  FESM K++ I+P +EHY CMV LL
Sbjct: 527 LFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLL 586

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GR  + +EA K+I ++  +P   VW +LLG+C IH  V+L    ++ + E+EP +   +V
Sbjct: 587 GRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHV 646

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++YA A  WD V  V++ ++ + ++K PG S +E +  ++ F   D  HP  + + A
Sbjct: 647 LLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICA 706

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
           +L  L+ + ++ GYVP    VL D+  +EKER +  HSE+LA+A+GLI T    +IRI K
Sbjct: 707 MLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYGLIRTPLSCSIRIIK 766

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH+  K ISK   +EI++RD+NRFHHFR+GVCSCGDYW
Sbjct: 767 NLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 176/353 (49%), Gaps = 9/353 (2%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           ++H H+   G   D F    L+N Y   +S+ DA  +FD+  +     +  L +  +   
Sbjct: 56  HLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDH 115

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
           +  + L    R+   G  +  + F +T +LK  V+      L      +HA V + G++ 
Sbjct: 116 QFHQALHFILRIFKEGHEV--NPFVFTTLLKLLVS----MDLAHLCWTLHACVYKLGHHA 169

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
              + T LID Y+  G V  A  VF  +  K++VSW+ M+ACYA N    E+L+LF +M 
Sbjct: 170 DAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMR 229

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           +  +   PN+ T+   L++C  L A   GK +HG  L+   D  L V  AL+ +YA+ G+
Sbjct: 230 IMGYK--PNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGE 287

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +   Q +F+ M K D++ W+ +I+ Y       +A+ +F  M    V P+  +F SVL A
Sbjct: 288 IIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQA 347

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           C+ +  ++ GK +   + K   +  +V     ++D+  +  ++E + K+ E+L
Sbjct: 348 CASSVSLDLGKQIHSCVLK-FGLNSNVFVSNAIMDVYAKCGEIENSMKLFEEL 399



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 18/258 (6%)

Query: 39  NSSTTPTSLSSRNK---NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCT 91
           NS      L  RN    N +I    + G+  +A+++    L  +  PT+ TY  +L +  
Sbjct: 391 NSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASA 450

Query: 92  HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNA 151
              +L   L +HS      +++D  +   LI++Y+    ++DAR  FDK  +R    WNA
Sbjct: 451 SLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNA 510

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           +    ++ G   E L L+  M  T    + ++ T+  VL AC  S+ G  LL  G + H 
Sbjct: 511 MICGYSMHGMSMEALNLFDMMQHTDC--KPNKLTFVGVLSAC--SNAG--LLYKG-QAHF 563

Query: 212 SVLRHGYN--GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-ACYARNG 267
             +   Y+    +   T ++ +  R G    A  +  ++A + +V+ W A++ AC     
Sbjct: 564 ESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKK 623

Query: 268 MAFEALELFREMIMESHD 285
           +    +     + ME HD
Sbjct: 624 VDLGRVCAQHVLEMEPHD 641


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/669 (34%), Positives = 375/669 (56%), Gaps = 73/669 (10%)

Query: 55   LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
            ++ +  + G+L  A+      P   ++++  ++ +      L DA+ ++  + +    Q 
Sbjct: 402  ILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPE----QT 457

Query: 115  PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
                T ++  Y+    +  AR +FD+     +  WNA+    T  G  +E  +L+++M  
Sbjct: 458  VATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPV 517

Query: 175  TGTG------------------------------IRSDRFTYTYVLKACVASSCGFSLLK 204
              +                               + SD  ++T  L AC         ++
Sbjct: 518  KNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDS-SFTSALSAC----ANIGDVE 572

Query: 205  HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV--------------------MYAGF- 243
             G+ IH+  ++ G     ++M  LI MYA+ G V                    + +G  
Sbjct: 573  IGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLS 632

Query: 244  ----------VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
                      VF +M  ++VVSW+A+I+ Y + G    AL+LF +M+  +  + PN +T+
Sbjct: 633  ENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDML--ARGIKPNQLTV 690

Query: 294  VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
             S+L AC  L A++ G+  H  I + G D+ L V ++L+TMY +CG  E G CVF+ M +
Sbjct: 691  TSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPE 749

Query: 354  RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
             D+++WN+++     +G G +AI+IF++M   G+ P  +SF+ VL ACSHAGLV+EG   
Sbjct: 750  HDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAH 809

Query: 414  FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
            F SM +++ I P V HY CMVDLLGRA  L EA  +IE++ ++P   +W +LLG+CRIH 
Sbjct: 810  FNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHR 869

Query: 474  NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI 533
            NVEL +R ++RLF++    +  YVLL++++A+  MWD+V  +++L++ +GL K PG S I
Sbjct: 870  NVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWI 929

Query: 534  EVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG 593
            +VK K++ FV+ D  H Q E++++ L       +  GY+P T  VL+D++ E+K+  +L 
Sbjct: 930  QVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLY 989

Query: 594  HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
            HSEKLAV FG+++T  G  I+I KNLR+C DCH+F KF+SK   ++I++RD NRFHHFR+
Sbjct: 990  HSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRD 1049

Query: 654  GVCSCGDYW 662
            G CSCGDYW
Sbjct: 1050 GSCSCGDYW 1058



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 187/444 (42%), Gaps = 86/444 (19%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P Q  + ++L + T  + L    ++       G++ D  + + ++N Y+   S+D A H 
Sbjct: 359 PDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHF 418

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+    R  Y W  +  A    GR ++ ++LY R+       ++          A + + 
Sbjct: 419 FETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKT----------AMMTAY 468

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                ++  + I   +L    N  V     +I  Y + G +  A  +F +M VKN  SW+
Sbjct: 469 AQVGRIQKARLIFDEIL----NPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWA 524

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMIA + +N  + EALEL  E+        P+  +  S L ACA +  +E G++IH   +
Sbjct: 525 AMIAGFVQNEESREALELLIEL--HRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAI 582

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL--------------- 362
           + G      V++ L++MYA+CG +E G  VF  +  +D VSWNSL               
Sbjct: 583 KTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARV 642

Query: 363 ----------------ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
                           IS+Y   G+G  A+ +F +M+  G+ P+ ++  S+L AC + G 
Sbjct: 643 VFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGA 702

Query: 407 V----------------------------------EEGKMLFESMRKEHMIRPSVEHYAC 432
           +                                  E+G  +FE M +  +I  +     C
Sbjct: 703 IKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFCVFEEMPEHDLITWNAVLVGC 762

Query: 433 MVDLLGRANKLEEAAKIIEDLRIE 456
             + LG+     EA KI E + +E
Sbjct: 763 AQNGLGK-----EAIKIFEQMEVE 781



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 159/359 (44%), Gaps = 20/359 (5%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           L+    K+G + +A +V          ++  ++     +  L +A  +   + +      
Sbjct: 239 LLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASW 298

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             +VT     Y H   + +AR +FD+   R    W  +           E  +++ +M  
Sbjct: 299 NSVVTG----YCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKM-- 352

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
             T  R D+  +  VL A      G   L+    +    ++ GY G V + + +++ Y R
Sbjct: 353 CRTVARPDQSIFVVVLSAIT----GLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTR 408

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A   F  M  +N  SW+ MIA +A+ G   +A++L+  +  ++        T  
Sbjct: 409 NGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQT------VATKT 462

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           +++ A A +  +++ ++I   IL   + +     +A++  Y + G L+  + +F  M  +
Sbjct: 463 AMMTAYAQVGRIQKARLIFDEILNPNVVAW----NAIIAGYTQNGMLKEAKDLFQKMPVK 518

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +  SW ++I+ +  +    +A+++  E+   G  PS  SF S L AC++ G VE G+++
Sbjct: 519 NSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVI 577



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 158/366 (43%), Gaps = 53/366 (14%)

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           V++AR VF++  +R +  WN++    +  G+ +E   L+      G  IR    T+T +L
Sbjct: 187 VEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAF--VGKNIR----TWTILL 240

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
                       ++  +E+  S+        V     +I  Y + G +  A  +F +M  
Sbjct: 241 TGYAKEG----RIEEAREVFESMTERN----VVSWNAMISGYVQNGDLKNARKLFDEMPE 292

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREM--------------------IMESHD----L 286
           KNV SW++++  Y       EA ELF +M                      E+ D    +
Sbjct: 293 KNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKM 352

Query: 287 C-----PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           C     P+    V VL A   L  LE    +    ++ G +  + V SA++  Y R G L
Sbjct: 353 CRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSL 412

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           +L    F+ M +R+  SW ++I+++   G    AIQ+++ +    V+       +++ A 
Sbjct: 413 DLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATK----TAMMTAY 468

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           +  G +++ +++F     + ++ P+V  +  ++    +   L+EA  + + + ++     
Sbjct: 469 AQVGRIQKARLIF-----DEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSAS- 522

Query: 462 WGSLLG 467
           W +++ 
Sbjct: 523 WAAMIA 528



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 45/198 (22%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
            T I    R G V  A  VF++M  ++VVSW++MI  Y++NG   EA  LF   +     
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFV----- 229

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
                                  GK I  + +             L+T YA+ G++E  +
Sbjct: 230 -----------------------GKNIRTWTI-------------LLTGYAKEGRIEEAR 253

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VF+ M +R+VVSWN++IS Y  +G    A ++F EM    V+    S+ SV+    H  
Sbjct: 254 EVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVA----SWNSVVTGYCHCY 309

Query: 406 LVEEGKMLFESMRKEHMI 423
            + E + LF+ M + + +
Sbjct: 310 RMSEARELFDQMPERNSV 327



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 107/264 (40%), Gaps = 57/264 (21%)

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           +T +  ++  N   + L   GR EE   ++  M      I+ D  ++  ++        G
Sbjct: 165 ETPQTHLFQCNTRIQELGRLGRVEEARRVFNEM------IQRDVVSWNSMIN-------G 211

Query: 200 FSLLKHGKEIHASVLRHGYNGI-VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
           +S  ++GK   A +L   + G  +   T L+  YA+ G +  A  VF  M  +NVVSW+A
Sbjct: 212 YS--QNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNA 269

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           MI+ Y +NG    A +LF EM  E +    NSV                           
Sbjct: 270 MISGYVQNGDLKNARKLFDEM-PEKNVASWNSV--------------------------- 301

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
                        VT Y  C ++   + +FD M +R+ VSW  +IS Y       +A  +
Sbjct: 302 -------------VTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDV 348

Query: 379 FKEMIYHGVSPSPISFVSVLGACS 402
           F +M      P    FV VL A +
Sbjct: 349 FVKMCRTVARPDQSIFVVVLSAIT 372


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/609 (38%), Positives = 352/609 (57%), Gaps = 50/609 (8%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
           NSL    +VH+ L   G D+D +L+ K++    +F + + +  +F +T+   I+++N + 
Sbjct: 21  NSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMI 80

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL--KHGKEIHA 211
             L L    +E +E+Y  M   G  +  D FT+ ++LKAC        LL  K G ++H 
Sbjct: 81  HGLVLNDSFQESIEIYHSMRKEG--LSPDSFTFPFLLKACA------RLLDSKLGIKLHG 132

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCV--------------------MYAGF-------- 243
            V++ G      + T+L+ +Y + G +                    + +G+        
Sbjct: 133 LVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCRE 192

Query: 244 ----------VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
                     VF  M  K++VSWS+MI  YA NG+  EAL+LF +M+ E     P+   M
Sbjct: 193 AIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFR--PDCYAM 250

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
           V VL ACA L ALE G      + R        + +AL+ MYA+CG+++    VF  M K
Sbjct: 251 VGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRK 310

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +D+V WN+ IS   + G+   A  +F +M   G+ P   +FV +L AC+HAGLV+EG+  
Sbjct: 311 KDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQY 370

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
           F SM +   + P +EHY CMVDLLGRA  L+EA ++++ + +E    VWG+LLG CR+H 
Sbjct: 371 FNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHR 430

Query: 474 NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI 533
           + +L E   K+L  LEP+N+GNYVLL+++Y+A+  W++  +++ ++  RG++KVPG S I
Sbjct: 431 DTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWI 490

Query: 534 EVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG 593
           EV   ++ F+  D  HP  E+++A L  L  ++K  GYVP T  VL+D++ EEKE  +  
Sbjct: 491 EVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGC 550

Query: 594 HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
           HSEKLA+AFGLI+T+  + IR+ KNLR+C DCH   K IS+F  +EI+VRD NRFH F +
Sbjct: 551 HSEKLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFND 610

Query: 654 GVCSCGDYW 662
           G CSC DYW
Sbjct: 611 GSCSCKDYW 619



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 151/319 (47%), Gaps = 44/319 (13%)

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
           GF+ LKH K +HA++LR G +   +++  ++     FG   Y+  +F Q    N+  ++ 
Sbjct: 19  GFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNT 78

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           MI     N    E++E++  M  E   L P+S T   +L+ACA L   + G  +HG +++
Sbjct: 79  MIHGLVLNDSFQESIEIYHSMRKEG--LSPDSFTFPFLLKACARLLDSKLGIKLHGLVVK 136

Query: 319 RGLDSILPVVSALVTMYARCGKLE--------------------------LGQC------ 346
            G +S   V ++LV++Y +CG ++                          +G+C      
Sbjct: 137 AGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDM 196

Query: 347 ------VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
                 VFD M ++D+VSW+S+I  Y  +G   +A+ +F +M+  G  P   + V VL A
Sbjct: 197 FRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCA 256

Query: 401 CSHAGLVEEGKMLFESM-RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           C+  G +E G      M R E +  P +     ++D+  +  +++ A ++   +R +   
Sbjct: 257 CARLGALELGNWASNLMDRNEFLGNPVLG--TALIDMYAKCGRMDSAWEVFRGMR-KKDI 313

Query: 460 KVWGSLLGSCRIHCNVELA 478
            VW + +    +  +V+ A
Sbjct: 314 VVWNAAISGLAMSGHVKAA 332



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 147/361 (40%), Gaps = 52/361 (14%)

Query: 53  NELIQSLCKQGNLRQALDVL-SIEP---NPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I  L    + ++++++  S+     +P   T+  LL +C         + +H  +  
Sbjct: 77  NTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVK 136

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G + D F+ T L+++Y     +D+A  VFD    + +  W A+       G+  E +++
Sbjct: 137 AGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDM 196

Query: 169 YRRM------------------------NG------------TGTGIRSDRFTYTYVLKA 192
           +RR                         NG               G R D +    VL A
Sbjct: 197 FRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCA 256

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
           C         L+ G      + R+ + G   + T LIDMYA+ G +  A  VF  M  K+
Sbjct: 257 CAR----LGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKD 312

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           +V W+A I+  A +G    A  LF +  ME   + P+  T V +L AC     +++G+  
Sbjct: 313 IVVWNAAISGLAMSGHVKAAFGLFGQ--MEKSGIEPDGNTFVGLLCACTHAGLVDEGRQY 370

Query: 313 HGYILRRGLDSILPVV---SALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGV 368
              + R  + ++ P +     +V +  R G L+    +   M  + + + W +L+    +
Sbjct: 371 FNSMER--VFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRL 428

Query: 369 H 369
           H
Sbjct: 429 H 429


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/616 (37%), Positives = 366/616 (59%), Gaps = 17/616 (2%)

Query: 55  LIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSH-LTDN 109
           +I +  + G+  + L +LS        P  +T+  +L +CT   +L +A  +H+  ++  
Sbjct: 189 IIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISST 248

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           G D+D  + T LIN+Y    ++++A  VF +   + I  W+++  A   +G+ +  ++L 
Sbjct: 249 GLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLL 308

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
             M+  G  +R +  T+  VL+A  +        ++GKEIHA +++ GY+  V + + L+
Sbjct: 309 MLMDLEG--VRPNNVTFVNVLEAVTS----LKAFQYGKEIHARIVQAGYSDDVCLTSALV 362

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
            MY  +G V  A  +F     ++VVSWS+MIA Y++N     AL LFREM  E   + PN
Sbjct: 363 KMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREM--EVDGVQPN 420

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
           SVT VS + ACA + AL +G  +H  +   GLD  +PV +ALV +Y +CG+LE  + VF 
Sbjct: 421 SVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFL 480

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
            M K+++++W S+  +YG +G+G +++++   M   G+ P  I FV++L +C++AG + +
Sbjct: 481 GMKKKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSK 540

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           G   +  M ++  I P+VEH  CMVD+LGRA KLE A ++I  ++ E     W  LL +C
Sbjct: 541 GLHYYNLMTQDFGIAPAVEHCGCMVDILGRAGKLEAAEQLINTMKFES-SLAWMMLLTAC 599

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
           + H +   A RA++++F+LEP NA  YVLL+ V+ AA  W+  +  +R ++ RG+Q++ G
Sbjct: 600 KAHNDTARAARAAEKIFQLEPKNATPYVLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLG 659

Query: 530 RSRIEVKRKMYSFVSVDEFHPQ--FEQLHALLINLSAEMKEKGYVPQ-TKVVLYDLDAEE 586
           RS IE+  +++ FV+  +  P     ++ A L  L  EM+  GYVP  T V L D++   
Sbjct: 660 RSSIEIGDRVHEFVAASDVLPHHLVGEIFAALEKLGREMQGAGYVPDATAVRLRDVEEGG 719

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE  V  HSE LA+  G+I+T  G  +RITKNLR+C DCH  TKF+SK  ++ I VRD  
Sbjct: 720 KENAVPYHSEMLALGLGIISTPAGTPLRITKNLRMCSDCHIATKFVSKLVHRRISVRDGR 779

Query: 647 RFHHFRNGVCSCGDYW 662
           R HHF NGVCSCGDYW
Sbjct: 780 RHHHFENGVCSCGDYW 795



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 209/380 (55%), Gaps = 11/380 (2%)

Query: 77  NPTQHTYELLLLSCT-HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           +P + T+  +LL  +    +L +   VHSH+   G++ D  ++  ++ +Y     V+ A 
Sbjct: 113 SPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAG 172

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
           +VFD  +   ++ W  +  A    G   EVL L  RMN    G++ D +T+T VL AC A
Sbjct: 173 NVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMN--QAGVKPDGYTFTTVLGACTA 230

Query: 196 SSCGFSLLKHGKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
                  L+  K +HA+ +   G +    + T LI++Y + G +  A  VF Q+  K++V
Sbjct: 231 ----VGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIV 286

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           SWS+MIA +A++G A  A++L   M+M+   + PN+VT V+VL+A  +L A + GK IH 
Sbjct: 287 SWSSMIAAFAQSGQAKSAIQLL--MLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHA 344

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            I++ G    + + SALV MY   G +E  + +F+   +RDVVSW+S+I+ Y  +    +
Sbjct: 345 RIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPAR 404

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A+ +F+EM   GV P+ ++FVS + AC+  G +  G  L E +R   + +  V     +V
Sbjct: 405 ALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDK-DVPVATALV 463

Query: 435 DLLGRANKLEEAAKIIEDLR 454
           +L G+  +LEEA  +   ++
Sbjct: 464 NLYGKCGRLEEAEAVFLGMK 483



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 171/332 (51%), Gaps = 13/332 (3%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQD-----PFLVTKLINVYSHFDSVDDARHVFDK 140
           +L +C+   +L +   VH  +      QD       L   +I +Y      D A  VFD+
Sbjct: 16  ILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDR 75

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
            + + +  W +L  A T AG   + + L+R+M    +G+  DR T+T +L   +  S   
Sbjct: 76  MKDQNVVAWTSLISAFTFAGHFGDAMVLFRKM--LLSGVSPDRITFTSIL---LKWSGRE 130

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             L  GK +H+ +++ GY G   +M  +++MY + G V  AG VF  +   NV SW+ +I
Sbjct: 131 RNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIII 190

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH-GYILRR 319
           A YA+NG   E L L     M    + P+  T  +VL AC A+ ALE+ K++H   I   
Sbjct: 191 AAYAQNGHCMEVLRLLSR--MNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISST 248

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           GLD    V +AL+ +Y +CG LE    VF  +D +D+VSW+S+I+++   G    AIQ+ 
Sbjct: 249 GLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLL 308

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             M   GV P+ ++FV+VL A +     + GK
Sbjct: 309 MLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGK 340



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 137/266 (51%), Gaps = 11/266 (4%)

Query: 190 LKACVA--SSCG-FSLLKHGKEIHASVLRHGYNGIVH-----IMTTLIDMYARFGCVMYA 241
           + AC A  ++C     L  GK +H  V+R             +   +I MY R GC   A
Sbjct: 10  ISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLA 69

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
             VF +M  +NVV+W+++I+ +   G   +A+ LFR+M++    + P+ +T  S+L   +
Sbjct: 70  LDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSG--VSPDRITFTSILLKWS 127

Query: 302 ALA-ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
                L++GK +H +I++ G +    V++ +V MY +CG +E    VFD +   +V SW 
Sbjct: 128 GRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWT 187

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
            +I++Y  +G+  + +++   M   GV P   +F +VLGAC+  G +EE K+L  +    
Sbjct: 188 IIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISS 247

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEA 446
             +         +++L G+   LEEA
Sbjct: 248 TGLDRDAAVGTALINLYGKCGALEEA 273



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 104/194 (53%), Gaps = 20/194 (10%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL-------DSILPVVSALVT 333
           ME+ ++        ++L AC+ L AL +GK +HG ++R  L       +S+L  +  ++ 
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENI--VIQ 58

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MY RCG  +L   VFD M  ++VV+W SLIS++   G+ G A+ +F++M+  GVSP  I+
Sbjct: 59  MYLRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRIT 118

Query: 394 FVSVLGACS-HAGLVEEGKMLFESMRKEHMIRPSVEH----YACMVDLLGRANKLEEAAK 448
           F S+L   S     ++EGK +       H+++   E        +V++ G+   +E+A  
Sbjct: 119 FTSILLKWSGRERNLDEGKRV-----HSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGN 173

Query: 449 IIEDLRIEPGPKVW 462
           + + ++ +P    W
Sbjct: 174 VFDSIQ-DPNVFSW 186


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/676 (36%), Positives = 368/676 (54%), Gaps = 74/676 (10%)

Query: 55  LIQSLCKQGNLRQA----LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I  L + G    A    LD++S    P+Q T   +L SC    +      VH  +   G
Sbjct: 318 MIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLG 377

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
                 +   ++ +Y      + AR VF++ + R++  WN +    T  GR E  + ++ 
Sbjct: 378 LSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFE 437

Query: 171 RM-----------------NG-------------TGTGIRSDRFTYTYVLKACVASSCGF 200
            M                 NG             + + +  D FT T VL AC       
Sbjct: 438 NMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACA----NL 493

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA------------------- 241
            +LK GK++H+ +LR G      IM  LI  YA+ G V  A                   
Sbjct: 494 RMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTA 553

Query: 242 ---GFV-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
              G+V           F  M  ++V++W+AMI  Y +NG   EA+ELFR MI+   +  
Sbjct: 554 LLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPE-- 611

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           PNS T+ +VL ACA+LA L+ GK IH   +R   +  + V +A++T+YAR G + L + V
Sbjct: 612 PNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRV 671

Query: 348 FDHM-DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           FD +  +++ ++W S+I +   HG G +A+ +F+EM+  GV P  I++V VL AC+HAG 
Sbjct: 672 FDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGF 731

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V++GK  +E M+ EH I P + HYACMVDL  RA  L EA + I+ + + P   VWGSLL
Sbjct: 732 VDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLL 791

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +CR+  N +LAE A+ +L  ++P N+G Y  LA+VY+A   W++  R+ +L + +G++K
Sbjct: 792 AACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKK 851

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S   V+ K++ F + D  HPQ + ++     +  E+K+ G+VP    VL+D+D E 
Sbjct: 852 ETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDEL 911

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE ++  HSEKLA+AFGLI+T +  T+RI KNLR+C DCH+  KFISKF ++EI+VRD  
Sbjct: 912 KEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDAT 971

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHFR+G CSC DYW
Sbjct: 972 RFHHFRDGYCSCKDYW 987



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 190/420 (45%), Gaps = 76/420 (18%)

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           ++ F    L+++Y+    + DA  VF +   R    W  +   L  +GR  + ++ +  M
Sbjct: 279 RNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDM 338

Query: 173 NGTGTGIRSDRFTYTYVLKACVA-SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
                G    +FT T VL +C A  +CG      G+++H  V++ G +  V +  +++ M
Sbjct: 339 --VSEGFAPSQFTLTNVLSSCAAMEACGV-----GRKVHPFVVKLGLSSCVPVANSVLYM 391

Query: 232 YARFGCVMYAGFVFSQMAVKNV-------------------------------VSWSAMI 260
           Y + G    A  VF +M V++V                               VSW+ +I
Sbjct: 392 YGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTII 451

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           A Y +NG+   AL+ F  M+  S  + P++ T+ SVL ACA L  L+ GK +H YILR G
Sbjct: 452 AGYNQNGLDGMALKFFSRMLSAS-SMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTG 510

Query: 321 LDSILPVVSALVTMYARCGKLE----------------------------LGQC-----V 347
           +     +++AL++ YA+ G +E                            LG       +
Sbjct: 511 MPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREI 570

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           FD M+ RDV++W ++I  Y  +G   +A+++F+ MI  G  P+  +  +VL AC+    +
Sbjct: 571 FDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYL 630

Query: 408 EEGKMLF-ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           + GK +  +++R   +   SV     ++ +  R+  +  A ++ + +        W S++
Sbjct: 631 DYGKQIHCKAIRS--LQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMI 688



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 142/314 (45%), Gaps = 70/314 (22%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFG----CVMYAGFVFSQM--AVKNVVSWSAM 259
           G+ IHA  ++ G     ++   L+  YA  G    C   A  +F  +  A +N  +W+++
Sbjct: 228 GRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSL 287

Query: 260 IACYARNGMAFEALELFREMI-----------------------------MESHDLCPNS 290
           ++ YA++G   +A  +F EM                              M S    P+ 
Sbjct: 288 LSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQ 347

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC------------ 338
            T+ +VL +CAA+ A   G+ +H ++++ GL S +PV ++++ MY +C            
Sbjct: 348 FTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFER 407

Query: 339 -------------------GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
                              G++EL   +F++M +R +VSWN++I+ Y  +G  G A++ F
Sbjct: 408 MQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFF 467

Query: 380 KEMI-YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLL 437
             M+    + P   +  SVL AC++  +++ GK +   + +  M  P S +    ++   
Sbjct: 468 SRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGM--PCSSQIMNALISTY 525

Query: 438 GRANKLEEAAKIIE 451
            ++  +E A +I++
Sbjct: 526 AKSGSVETARRIMD 539



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 37/144 (25%)

Query: 296 VLQACAALAALEQGKMIHGYILRRGL-------DSILPVVS------------------- 329
           +LQ C        G+ IH + ++ GL       +++L   +                   
Sbjct: 215 LLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDI 274

Query: 330 -----------ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
                      +L+++YA+ G+L     VF  M  RD VSW  +I      G    A++ 
Sbjct: 275 PYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKT 334

Query: 379 FKEMIYHGVSPSPISFVSVLGACS 402
           F +M+  G +PS  +  +VL +C+
Sbjct: 335 FLDMVSEGFAPSQFTLTNVLSSCA 358


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/644 (36%), Positives = 380/644 (59%), Gaps = 18/644 (2%)

Query: 27  PKPSSVCCCVSLNSSTTPTSLSSRNKNEL---IQSLCKQGNLRQALDVLSI-EPNPT--- 79
           PKPS++   V   +    T L  +  +EL   I+ L       +AL++  I E N     
Sbjct: 71  PKPSTIELNVGKEAQVNETQLR-KPSSELCGQIEKLVFFKRYHEALELFEILELNGAYDM 129

Query: 80  -QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
              TY+ L+ +C    S+     V +++ ++G D D +L  +++ ++     + DAR +F
Sbjct: 130 DSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLF 189

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           D+   + I  WN +   L  AG   E   L+  M    +   S  F         + +S 
Sbjct: 190 DEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFV------TMIRASA 243

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
           G  L+  G+++H+  L+ G  G V +   LIDMY++ G +  A  VF QM  K  V W++
Sbjct: 244 GLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNS 303

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           +IA YA +G + EAL ++ EM      +  ++ T   +++ CA LA+LE  K  H  ++R
Sbjct: 304 IIAGYALHGYSEEALSMYYEM--RDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVR 361

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
            G    +   +ALV +Y++ G++E  + VFD M  ++V+SWN+LI+ YG HG G +A+++
Sbjct: 362 HGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEM 421

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
           F+ M++ G+ P+ ++F++VL ACS++GL + G  +FESM ++H I+P   HYACM++LLG
Sbjct: 422 FERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLG 481

Query: 439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVL 498
           R   L+EA  +I+D   +P   +W +LL +CR+H N EL + A+++L+ + P    NYV+
Sbjct: 482 REGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVV 541

Query: 499 LADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHAL 558
           L ++Y  +   +E   V + L+ RGL+ +P  S IE+K++ Y F+S D+ H Q ++++  
Sbjct: 542 LLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQK 601

Query: 559 LINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKN 618
           L  L  E+ + GYVPQ K +L D+D E++ER++L HSEKLA+AFGLINTS    ++I ++
Sbjct: 602 LDELMLEISKHGYVPQDKFLLPDVD-EQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQS 660

Query: 619 LRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            R+C DCHS  K I+    +EI+VRD +RFHHF++G CSCGDYW
Sbjct: 661 HRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/625 (36%), Positives = 351/625 (56%), Gaps = 39/625 (6%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
           L++L     P ++T+  L    T   +L     +H H+  +G   + F+ T L+ +Y   
Sbjct: 128 LEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLC 187

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
             +D AR VFD   +  +  WN +  A    G+ EE   L+  M      +     T   
Sbjct: 188 GQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQ--VLPTTVTLVL 245

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG------------ 236
           VL AC         L+ GK++H+ V        + +   +IDMYA  G            
Sbjct: 246 VLSAC----SKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSM 301

Query: 237 --------CVMYAGFV-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
                     + +GF            F +M  K+ VSW+AMI  Y R+    EALELFR
Sbjct: 302 NNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFR 361

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
            M  ++ ++ P+  TMVSVL ACA L ALE G+ I  YI R  + + L V +AL+ MY +
Sbjct: 362 NM--QATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFK 419

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           CG ++  + +F  M +RD  +W ++I    V+G+G KA+ +F  M+   + P  I+++ V
Sbjct: 420 CGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGV 479

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           L AC+H GLV++G+  F  M  +H I P++ HY C+VDLL RA +L+EA ++IE++ I+ 
Sbjct: 480 LSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKA 539

Query: 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
              VWG+LL  CR++   ++AE   K++ ELEP N   YVLL ++YAA   W++++ +++
Sbjct: 540 NSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQ 599

Query: 518 LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKV 577
           ++  +G++K PG S IE+  +++ FV+ D  HPQ + + A L  ++ ++K  GY P    
Sbjct: 600 MMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISE 659

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           V  D+  E+KE  V  HSEKLA+AFGLIN+  G TIRITKNLR+C DCH+  K +SK  N
Sbjct: 660 VFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYN 719

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +E++VRD  RFHHF++G+CSC DYW
Sbjct: 720 REVIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 195/413 (47%), Gaps = 51/413 (12%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDA 134
           +P  H    LL +C   + L     VH      G + +P L  +++       +     A
Sbjct: 36  SPPTHPLISLLETCESMDQLQ---QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYA 92

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R +FD+     +++WN + R  +     +  + LY  M     G++ DR+T+ ++ K   
Sbjct: 93  RRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEM--LRRGVKPDRYTFPFLFK--- 147

Query: 195 ASSCGFS---LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
               GF+    L++G+++H  VL+HG    V + T L+ MY   G +  A  VF      
Sbjct: 148 ----GFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKA 203

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +V++W+ +I+ Y + G   E+  LF  ++ME   + P +VT+V VL AC+ L  L  GK 
Sbjct: 204 DVITWNMIISAYNKVGKFEESRRLF--LVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKK 261

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG---- 367
           +H Y+    ++S L + +A++ MYA CG+++    +F  M+ RD++SW +++S +     
Sbjct: 262 VHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGE 321

Query: 368 ----------------------VHGY-----GGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
                                 + GY       +A+++F+ M    V P   + VSVL A
Sbjct: 322 IDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTA 381

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           C+H G +E G+ +  +    + I+  +     ++D+  +   +++A  I  ++
Sbjct: 382 CAHLGALELGEWI-RTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREM 433


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 351/569 (61%), Gaps = 13/569 (2%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           SLS  ++VH+  T+N    D F+ T LI+ YS    + +A  +F +     +  WNA+  
Sbjct: 441 SLSKQIHVHAIKTNNV--ADSFVSTALIDAYSRNRCMKEAEVLFGRNNFDLV-AWNAMMS 497

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL-LKHGKEIHASV 213
             T +  G + LEL+  M+  G   RSD FT   VLK     +CGF   +  GK++HA  
Sbjct: 498 GYTQSHDGHKTLELFALMHKQGE--RSDDFTLATVLK-----TCGFLFAINQGKQVHAYA 550

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           ++ GY+  + + + ++DMY + G +  A F F  + V + V+W+ +I+    NG    AL
Sbjct: 551 IKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERAL 610

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
            +F +M +    + P+  T+ ++ +A + L ALEQG+ IH   L+    S   V ++LV 
Sbjct: 611 HVFSQMRLMG--VLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVD 668

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MYA+CG ++   C+F  ++  ++ +WN+++     HG G +A+Q+FK+M   G+ P  ++
Sbjct: 669 MYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVT 728

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           F+ VL ACSH+GLV E      SM +++ I+P +EHY+C+ D LGRA  ++EA  +I+ +
Sbjct: 729 FIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSM 788

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
            +E    ++ +LL +CR+  + E  +R + +L ELEP ++  YVLL+++YAAA  WDE+K
Sbjct: 789 SMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMK 848

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
             + +++   ++K PG S IEVK K++ FV  D  +PQ E ++  + ++  ++K++GYVP
Sbjct: 849 LARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVP 908

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
           +T   L D++ EEKER +  HSEKLAVAFGL++T     IR+ KNLR+C DCH+  K+IS
Sbjct: 909 ETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIS 968

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K  ++EI++RD NRFH F++G+CSCGDYW
Sbjct: 969 KVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 140/291 (48%), Gaps = 10/291 (3%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T   +L +C    +++    VH++   +G+D D ++ + ++++Y     +  A+  FD  
Sbjct: 526 TLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSI 585

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
                  W  L       G  E  L ++ +M     G+  D FT   + K   ASSC  +
Sbjct: 586 PVPDDVAWTTLISGCIENGEEERALHVFSQMR--LMGVLPDEFTIATLAK---ASSC-LT 639

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L+ G++IHA+ L+        + T+L+DMYA+ G +  A  +F ++ + N+ +W+AM+ 
Sbjct: 640 ALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLV 699

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRG 320
             A++G   EAL+LF++  MES  + P+ VT + VL AC+    + +  K I       G
Sbjct: 700 GLAQHGEGKEALQLFKQ--MESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYG 757

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS-WNSLISSYGVHG 370
           +   +   S L     R G ++  + + D M      S + +L+++  V G
Sbjct: 758 IKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQG 808



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 10/211 (4%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK  HA +L    N    ++  LI MY++ G + YA  VF +M  +++VSW++++A YA+
Sbjct: 65  GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124

Query: 266 NGMAF-----EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           +         EA  LFR  I+    +  + +T+  +L+ C     +   +  HGY  + G
Sbjct: 125 SSEGVVENVKEAFLLFR--ILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIG 182

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           LD    V  ALV +Y + GK++ G+ +F+ M  RDVV WN ++ +Y   G+  +AI +  
Sbjct: 183 LDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSS 242

Query: 381 EMIYHGVSPSPIS---FVSVLGACSHAGLVE 408
                G+ P+ I+      + G  S AG V+
Sbjct: 243 AFHTSGLHPNEITLRLLSRISGDDSEAGQVK 273



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 145/287 (50%), Gaps = 16/287 (5%)

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
           F++ +DA  V +   R      N +      AG+   +L+ +  M+   + +  D+ T+ 
Sbjct: 275 FENGNDASAVSEIISR------NKILSGYLHAGQYSALLKCF--MDMVESDLECDQVTFI 326

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
            VL    A++     L  G+++H   L+ G + ++ +  +LI+MY +   +  A  VF+ 
Sbjct: 327 LVL----ATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNN 382

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA-AL 306
           M+ ++++SW+++IA  A++ +  EA+ LF +++     L P+  TM SVL+A ++L   L
Sbjct: 383 MSERDLISWNSVIAGIAQSDLEVEAVCLFMQLL--RCGLKPDHYTMTSVLKAASSLPEGL 440

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
              K IH + ++    +   V +AL+  Y+R   ++  + +F   +  D+V+WN+++S Y
Sbjct: 441 SLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGY 499

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
                G K +++F  M   G      +  +VL  C     + +GK +
Sbjct: 500 TQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQV 546



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 28/219 (12%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP--FLVTKLINVYSHFDSVDDARHVFD 139
           T +L+L  CTH   L+              +++P  FLV  LI++YS   S+  AR VFD
Sbjct: 59  TSDLMLGKCTHARILA-------------LEENPERFLVNNLISMYSKCGSLTYARRVFD 105

Query: 140 KTRRRTIYVWNALFRALTLAGRG-----EEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           K   R +  WN++  A   +  G     +E   L+R +      + + R T + +LK C+
Sbjct: 106 KMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILR--QDVVYTSRMTLSPMLKLCL 163

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
            S  G+  +   +  H    + G +G   +   L+++Y +FG V     +F +M  ++VV
Sbjct: 164 HS--GY--VCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVV 219

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
            W+ M+  Y   G   EA++L       +  L PN +T+
Sbjct: 220 LWNLMLKAYLEMGFKEEAIDL--SSAFHTSGLHPNEITL 256



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 9/205 (4%)

Query: 55  LIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           LI    + G   +AL V S    +   P + T   L  + +   +L     +H++     
Sbjct: 596 LISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 655

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              DPF+ T L+++Y+   S+DDA  +F +     I  WNA+   L   G G+E L+L++
Sbjct: 656 CTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFK 715

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           +M     GI+ D+ T+  VL AC  S       K+ + +H     +G    +   + L D
Sbjct: 716 QME--SLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRD---YGIKPEIEHYSCLAD 770

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVS 255
              R G V  A  +   M+++   S
Sbjct: 771 ALGRAGLVKEAENLIDSMSMEASAS 795


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/608 (36%), Positives = 363/608 (59%), Gaps = 12/608 (1%)

Query: 55  LIQSLCKQGNLRQALDVLSI----EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           LI  L +QG   +++ +  +    +  P Q+T   LL + T+  +L    ++H+ +   G
Sbjct: 386 LITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG 445

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           F+ D  +   L+ +Y     V D   +++    R +  WNA    L   G  +  L ++ 
Sbjct: 446 FETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFY 505

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M     G   + +T+  +L +C   SC F +  +G+++HA ++++  +    + T LID
Sbjct: 506 HM--LEEGFIPNMYTFISILGSC---SCLFDV-HYGRQVHAHIIKNQLDDNNFVCTALID 559

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MYA+   +  A   F++++V+++ +W+ +I  YA+     +AL  FR+M  E   + PN 
Sbjct: 560 MYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEG--VKPNE 617

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T+   L  C++LA+LE G+ +H  + + G  S + V SALV MYA+CG +E  + +F+ 
Sbjct: 618 FTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEA 677

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           + +RD ++WN++I  Y  +G G KA+  F+ M+  G+SP  ++F  +L ACSH GLVEEG
Sbjct: 678 LIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEG 737

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           K  F SM ++  I P+V+H ACMVD+LGR  K +E    I+ +++     +W ++LG+ +
Sbjct: 738 KEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASK 797

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
           +H N+ L E+A+ +LFEL+P    +Y+LL++++A    WD+VKRV+ L+ ++G++K PG 
Sbjct: 798 MHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGC 857

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S +E   ++++FVS D  HPQ +++H  L  L  E+    YVP+T+ VL+++   EK+  
Sbjct: 858 SWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKEN 917

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +  HSE+LA+ F LI+TS  + IRI KNLR+C DCH   K IS   N+EI+VRDV RFHH
Sbjct: 918 LRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHH 977

Query: 651 FRNGVCSC 658
           F+NG CSC
Sbjct: 978 FKNGACSC 985



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 196/400 (49%), Gaps = 21/400 (5%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           LIQ L  +G    ++ +     N    P + T    L +C+   +L     +H+     G
Sbjct: 184 LIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLG 243

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              D F+ + L+++Y+    ++ A  +F     +    WN L       G    VL+L+ 
Sbjct: 244 LLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFC 303

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M      ++ + FT T VLK C  S      LK G+ IH+ +++ GY G   I   L+D
Sbjct: 304 SM--MELDVKCNEFTLTTVLKGCANSKN----LKQGQVIHSLIIKCGYEGNEFIGCGLVD 357

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MY++ G  + A  VF  +   ++V WSA+I C  + G + E+++LF   +M   D  PN 
Sbjct: 358 MYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFH--LMRLGDTLPNQ 415

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T+ S+L A      L+ G+ IH  + + G ++ + V +ALVTMY + G +  G  +++ 
Sbjct: 416 YTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYES 475

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M  RD++SWN+ +S     G   + + IF  M+  G  P+  +F+S+LG+CS    V  G
Sbjct: 476 MVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG 535

Query: 411 KMLFESMRKEHMIRPSVE--HYAC--MVDLLGRANKLEEA 446
           + +       H+I+  ++  ++ C  ++D+  +   LE+A
Sbjct: 536 RQV-----HAHIIKNQLDDNNFVCTALIDMYAKCMYLEDA 570



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 160/329 (48%), Gaps = 8/329 (2%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  +L  C    SL  A  +H  +  +  + D  L   L+NVY+       AR V  K  
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
            R +  W AL + L   G   + + L++ M     GI  + FT    LKAC  S C    
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQ--NEGIMPNEFTLATGLKAC--SLC--MA 228

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L  GK++HA   + G    + + + L+D+YA+ G +  A  +F  M  +N V+W+ ++  
Sbjct: 229 LDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNG 288

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           YA+ G     L+LF  M+    D+  N  T+ +VL+ CA    L+QG++IH  I++ G +
Sbjct: 289 YAQRGDVTGVLKLFCSMM--ELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYE 346

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
               +   LV MY++CG       VF  + K D+V W++LI+     G   ++I++F  M
Sbjct: 347 GNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLM 406

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGK 411
                 P+  +  S+L A ++ G ++ G+
Sbjct: 407 RLGDTLPNQYTICSLLSAATNTGNLQYGQ 435



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 150/282 (53%), Gaps = 10/282 (3%)

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
           Y+ +L+ C +       L   K IH  +++   N   H+  +L+++YA+     YA  V 
Sbjct: 115 YSSMLRECASKRS----LGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVL 170

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
           ++M  ++VVSW+A+I      G A +++ LF+EM  ++  + PN  T+ + L+AC+   A
Sbjct: 171 AKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEM--QNEGIMPNEFTLATGLKACSLCMA 228

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           L+ GK +H    + GL   L V SALV +YA+CG++EL   +F  M +++ V+WN L++ 
Sbjct: 229 LDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNG 288

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           Y   G     +++F  M+   V  +  +  +VL  C+++  +++G+++   + K      
Sbjct: 289 YAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIK--CGYE 346

Query: 426 SVEHYAC-MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
             E   C +VD+  +     +A  + + ++ +P   VW +L+
Sbjct: 347 GNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI 387


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/592 (38%), Positives = 355/592 (59%), Gaps = 10/592 (1%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV--YSHFDS 130
           S E N  Q   E L L      SL +   VH  +   G   D F  + ++     S ++S
Sbjct: 23  SSELNLKQKEQEYLCL-VKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNS 81

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           +D A  +F +    T + +N + R        E  + LY  M      +  D FTY  VL
Sbjct: 82  MDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDM--LQREVEPDNFTYPVVL 139

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
           KAC       ++++ G +IH  V + G    V++  +LI+MY +   +  +  +F +M  
Sbjct: 140 KACAR----LAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQ 195

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           K+V SWSA+IA +A   M +E L LF +M  E       S+ +V+VL AC  L A   G+
Sbjct: 196 KSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESI-LVNVLSACTHLGAFHLGR 254

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
             HG +L+   +  + V+++L+ MY +CG L+ G C+F +M +++ +S++ +IS  G+HG
Sbjct: 255 CAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHG 314

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
           YG +A+QIF EM+  G+ P  +++VSVL ACSH+GLV+EG  LF+ M+ E+ I P+++HY
Sbjct: 315 YGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHY 374

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
            CMVDL GRA  LEEA ++++ + I+    +W SLL +C++H N++L E A++ LF L  
Sbjct: 375 GCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRLSS 434

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
            N  +Y++L+++YA A  W+   +++  +  RGL + PG S +EVK K+Y FVS D+ + 
Sbjct: 435 HNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVKSKVYKFVSQDKSYC 494

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           +   ++ ++  +  +++ +GY+P T  V+ D+D EEK   + GHS+KLA+AF LI+TS+G
Sbjct: 495 KSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKGERLKGHSQKLAIAFALIHTSQG 554

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             IRI +NLR+C DCHS+TK +S    +EI VRD NRFHHF++G CSC DYW
Sbjct: 555 SAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHFKDGNCSCRDYW 606



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 168/367 (45%), Gaps = 17/367 (4%)

Query: 35  CVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSC 90
           C        PT+    + N +I+      N   A+    D+L  E  P   TY ++L +C
Sbjct: 86  CSIFQQLDEPTTF---DFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKAC 142

Query: 91  THHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN 150
                + + + +H H+   G + D ++   LIN+Y     ++ +  +F +  ++++  W+
Sbjct: 143 ARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWS 202

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
           A+  A        E L L+  M+  G   R++      VL AC      F L   G+  H
Sbjct: 203 AIIAAHASLAMWWECLALFEDMSREGCW-RAEESILVNVLSACTHLG-AFHL---GRCAH 257

Query: 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAF 270
            S+L++     V +MT+L+DMY + G +     +F  M  KN +S+S +I+    +G   
Sbjct: 258 GSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGR 317

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVS 329
           +AL++F EM+ E   L P+ VT VSVL AC+    +++G  +         ++  +    
Sbjct: 318 QALQIFSEMVEEG--LEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYG 375

Query: 330 ALVTMYARCGKLELG-QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
            +V +  R G LE   Q V     K + V W SL+S+  VH    K  +I  E ++   S
Sbjct: 376 CMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHD-NLKLGEIAAENLFRLSS 434

Query: 389 PSPISFV 395
            +P  ++
Sbjct: 435 HNPSDYL 441


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/574 (37%), Positives = 353/574 (61%), Gaps = 10/574 (1%)

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
           SCT   S+S    +H+ +  +    D F+  +L+++Y      +DA+ +FD+   R +  
Sbjct: 151 SCT---SVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVS 207

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           WN+L   L+  G     L  + RM  T +G + +  T   V+ AC         L  GK 
Sbjct: 208 WNSLMSGLSGRGYLGACLNAFCRMR-TESGRQPNEVTLLSVVSACAX----MGALDEGKS 262

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           +H  V++ G +G   ++ +LI+MY + G +  A  +F +M V+++VSW++M+  +  NG 
Sbjct: 263 LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGY 322

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
           A + ++LF   +M+   + P+  TMV++L+AC       Q + IH YI R G ++ + + 
Sbjct: 323 AEKGMDLFN--LMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIA 380

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           +AL+ +YA+ G+L   + +F+ +  RD ++W ++++ Y VH  G +AI++F  M+  GV 
Sbjct: 381 TALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVE 440

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
              ++F  +L ACSH+GLVEEGK  FE M + + + P ++HY+CMVDLLGR+ +LE+A +
Sbjct: 441 VDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYE 500

Query: 449 IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
           +I+ + +EP   VWG+LLG+CR++ NVEL +  +++L  L+P++  NY++L+++Y+AA +
Sbjct: 501 LIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGL 560

Query: 509 WDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKE 568
           W    +V+ L++ R L + PG S IE   K++ FV  D+ HP+ +++H  L  L  ++ E
Sbjct: 561 WRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXE 620

Query: 569 KGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSF 628
            G  P+T+ VL+D+D E K  ++  HSEKLA+AFGL+ T  G  + ITKNLR+C DCHS 
Sbjct: 621 AGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHST 680

Query: 629 TKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KF S    + I++RD  RFHHF +G+CSC DYW
Sbjct: 681 AKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 167/375 (44%), Gaps = 56/375 (14%)

Query: 53  NELIQSLCKQGNLRQALDVL-SIEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHLT 107
           N L+  L  +G L   L+    +     +   E+ LLS    C    +L +  ++H  + 
Sbjct: 209 NSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVV 268

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
             G      +V  LIN+Y     +D A  +F++   R++  WN++       G  E+ ++
Sbjct: 269 KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMD 328

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+  M     GI  D+ T   +L+AC  +  G    +  + IHA + R G+N  + I T 
Sbjct: 329 LFNLMK--RAGINPDQATMVALLRACTDTGLG----RQAESIHAYIHRCGFNADIIIATA 382

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+++YA+ G +  +  +F ++  ++ ++W+AM+A YA +    EA++LF  M+ E  ++ 
Sbjct: 383 LLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEV- 441

Query: 288 PNSVTMVSVLQACAALAALEQGK-----MIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
            + VT   +L AC+    +E+GK     M   Y +   LD      S +V +  R G+LE
Sbjct: 442 -DHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH----YSCMVDLLGRSGRLE 496

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
                                           A ++ K M    + PS   + ++LGAC 
Sbjct: 497 -------------------------------DAYELIKSM---PMEPSSGVWGALLGACR 522

Query: 403 HAGLVEEGKMLFESM 417
             G VE GK + E +
Sbjct: 523 VYGNVELGKEVAEQL 537


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/523 (43%), Positives = 324/523 (61%), Gaps = 13/523 (2%)

Query: 147 YVWNALFRALTLA-----GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
           ++WN L RA   A     G     + ++ RM   G  ++ D  T+ ++L++  + S    
Sbjct: 25  FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHG--VQPDFHTFPFLLQSFASPS---- 78

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
           LL  G+ +HA +LR G      + T+LI MY+  G V  A  +F+ M  +NV+SWS MI 
Sbjct: 79  LLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMIN 138

Query: 262 CYARNGMAFEALELFREMIMES-HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
            Y R G   EAL LFREM M   +D+ PN  TM  VL AC  L ALE GK  H YI + G
Sbjct: 139 GYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCG 198

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIF 379
           +   + + +AL+ MYA+CG +E    VF ++   +DV++W+++IS   +HG   + + +F
Sbjct: 199 MPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLF 258

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
            +MI  GV P+ ++F++V  AC H GLV EGK     M +++ I P+++HY CMVDL GR
Sbjct: 259 SKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGR 318

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           A +++EA  +++ + +EP   VWG+LL   R+H ++E  E A K+L ELEPTN+G YVLL
Sbjct: 319 AGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLL 378

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           ++VYA    W++V+ V+ L+E  G++KVPG S IEV   ++ F   D+ HP+  Q+H +L
Sbjct: 379 SNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMML 438

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
             +   +K +GYV  TK VL DLD E KE  +  HSEKLA+A+G + TS G  IRI KNL
Sbjct: 439 EEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNL 498

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCH   K ISK  ++EI+VRD NRFHHF  G+CSC DYW
Sbjct: 499 RICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 157/301 (52%), Gaps = 16/301 (5%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P  HT+  LL S    + L    +VH+ +   G   DPF+ T LI++YS    VD AR+
Sbjct: 61  QPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARN 120

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG-IRSDRFTYTYVLKACVA 195
           +F     R +  W+ +       G+ +E L L+R M   G   +R + FT + VL AC  
Sbjct: 121 LFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGR 180

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNVV 254
                  L+HGK  HA + + G    V + T LIDMYA+ G V  A +VFS +   K+V+
Sbjct: 181 ----LGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVM 236

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           +WSAMI+  A +G+A E + LF +MI  +  + PN+VT ++V  AC     + +GK    
Sbjct: 237 AWSAMISGLAMHGLAEECVGLFSKMI--NQGVRPNAVTFLAVFCACVHGGLVSEGK---D 291

Query: 315 YILRRGLD-SILPVV---SALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
           Y+ R   D SI+P +     +V +Y R G+++    V   M  + DV+ W +L+S   +H
Sbjct: 292 YLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMH 351

Query: 370 G 370
           G
Sbjct: 352 G 352


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/595 (36%), Positives = 337/595 (56%), Gaps = 36/595 (6%)

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           A  +H+ +   G +Q   +   L+N Y     + DA  +FD   RR    W +L  A  L
Sbjct: 22  AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNL 81

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           + R    L + R +    TG   D F +  ++KAC  ++ G   +K GK++HA      +
Sbjct: 82  SNRPHRALSISRSL--LSTGFHPDHFVFASLVKAC--ANLGVLHVKQGKQVHARFFLSPF 137

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR- 277
           +    + ++LIDMYA+FG   Y   VF  ++  N +SW+ MI+ YAR+G  FEA  LFR 
Sbjct: 138 SDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQ 197

Query: 278 ------------------------------EMIMESHDLCPNSVTMVSVLQACAALAALE 307
                                         EM  E   +  + + + SV+ ACA LA  E
Sbjct: 198 TPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVT-DPLVLSSVVGACANLALWE 256

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            GK +HG ++  G +S L + +AL+ MYA+C  L   + +F  M ++DVVSW S+I    
Sbjct: 257 LGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTA 316

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
            HG   +A+ ++ EM+  GV P+ ++FV ++ ACSHAGLV +G+ LF +M ++H I PS+
Sbjct: 317 QHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSL 376

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           +HY C++DL  R+  L+EA  +I  + + P    W +LL SC+ H N ++A R +  L  
Sbjct: 377 QHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLN 436

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           L+P +  +Y+LL+++YA A MW++V +V++L+     +K PG S I++ +  + F + + 
Sbjct: 437 LKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGET 496

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
            HP  +++  L+  L  EM+++GY P T  VL+D+D +EKER +  HSE+LAVA+GL+  
Sbjct: 497 SHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKA 556

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             G  IRI KNLR+C DCH+  K IS   N+EI VRD  R+HHF++G CSC D+W
Sbjct: 557 VPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/592 (40%), Positives = 352/592 (59%), Gaps = 26/592 (4%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWNA 151
           N L     VH  +   GF     L   ++++YS    V  A  VF+     +R +  WN+
Sbjct: 179 NCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNS 238

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGT-GIRSDRFTYTYVLKACVASSCGFS---LLKHGK 207
           L    TL G  E  L  +  M   GT  +  +R T   +LK+C    C  +   + ++  
Sbjct: 239 LISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYIS 298

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
             H+S+L       V ++T L+DM+AR G +  A  +F  +  KNVV WSAMIA Y +  
Sbjct: 299 SRHSSLL---VAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGS 355

Query: 268 MAFEALELFREMIMESH----DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
              EAL LFR+M+ME +    ++ PN+VT+VSV+ AC+ L A     MIH Y +  GLD 
Sbjct: 356 CPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQ 415

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQIFKE 381
              + SAL+ M A+CG +E G+ VF  MD+  R VVSW+S+I + G+HG G +A+++F E
Sbjct: 416 DARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSE 475

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   G  P+ I+++SVL ACSHAGLVE+GK  F SM K++ + P+ +HYAC+VDLLGRA 
Sbjct: 476 MRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAG 535

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
            L+EA  +I ++ I+    +WGSLL +C +H N +L E   K++  L+  + G++VLLA+
Sbjct: 536 HLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLAN 595

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +Y  A  WD+V R++  L   GL+K+PG+S IE+  ++YSF++ D  HP+ E ++  L  
Sbjct: 596 MYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDG 655

Query: 562 LSAEMKEKG-YVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET-------- 612
           L   +++   YV +T + + D D          HSE+LA+AFGLI   +  T        
Sbjct: 656 LDERVRKAAKYVTETGLNVEDGDIAGLILRCKYHSERLAIAFGLIMIDRHSTCSCSLRTA 715

Query: 613 --IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             IRITKNLR+C DCH++TK +SK  ++E++VRD +RFHHFR+G CSCGDYW
Sbjct: 716 TPIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 206/416 (49%), Gaps = 31/416 (7%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+  LL +C     L   L VH++LT  G   D F    L++ Y        A  VFD+ 
Sbjct: 54  TFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEM 113

Query: 142 RRRTIYV--WNALFRALTLAGRGEEVLELYRRMNGTGTGIRS-----DRFTYTYVLKACV 194
              ++ V  W AL  A +  G  +E  + + RM        S     D  +   ++ AC 
Sbjct: 114 PEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSAC- 172

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--KN 252
           A  CG + L+ G  +H  V+++G+    H+  +++ MY+    V  A  VF+ + +  ++
Sbjct: 173 AVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRD 232

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLC-PNSVTMVSVLQACAALAALEQGKM 311
           VVSW+++I+ +  NG A  AL  F +M+ E      PN VT++++L++CA L  +E    
Sbjct: 233 VVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSW 292

Query: 312 IHGYILRRGLDSILP----VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
           +H YI  R    ++     V++AL+ M+ARCG L L + +FD ++ ++VV W+++I+ Y 
Sbjct: 293 VHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYE 352

Query: 368 VHGYGGKAIQIFKEMIYHG------VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
                 +A+++F++M+  G      V P+ ++ VSV+ ACS  G      M+      ++
Sbjct: 353 QGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMI-----HKY 407

Query: 422 MIRPSVEHYA----CMVDLLGRANKLEEAAKIIEDLRIEPGPKV-WGSLLGSCRIH 472
            +   ++  A     ++D+  +   +E   ++  ++       V W S++G+  IH
Sbjct: 408 AVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIH 463



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           K+   W+++IA  A       AL  F  M  ++H +  N+ T  ++L+ACAAL  L    
Sbjct: 16  KDTFHWNSLIAKNATQNPQ-TALTFFTRM--QAHAVPSNNFTFPALLKACAALRRLLPTL 72

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR--DVVSWNSLISSYGV 368
            +H Y+ R GL +     +ALV  Y +CG       VFD M +   DVVSW +LIS+Y  
Sbjct: 73  QVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSS 132

Query: 369 HGYGGKAIQIFKEMIY 384
           +G   +A + F  M +
Sbjct: 133 NGCVDEAFKAFGRMRW 148


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/531 (39%), Positives = 338/531 (63%), Gaps = 9/531 (1%)

Query: 134 ARHVFDKTRRR-TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           A  VF K  +   +++WN L R     G       LYR M  +G  +  D  TY +++KA
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGL-VEPDTHTYPFLIKA 130

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
                   + ++ G+ IH+ V+R G+  ++++  +L+ +YA  G V  A  VF +M  K+
Sbjct: 131 VTT----MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD 186

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           +V+W+++I  +A NG   EAL L+ EM   S  + P+  T+VS+L ACA + AL  GK +
Sbjct: 187 LVAWNSVINGFAENGKPEEALALYTEM--NSKGIKPDGFTIVSLLSACAKIGALTLGKRV 244

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           H Y+++ GL   L   + L+ +YARCG++E  + +FD M  ++ VSW SLI    V+G+G
Sbjct: 245 HVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFG 304

Query: 373 GKAIQIFKEM-IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
            +AI++FK M    G+ P  I+FV +L ACSH G+V+EG   F  MR+E+ I P +EH+ 
Sbjct: 305 KEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFG 364

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           CMVDLL RA ++++A + I+ + ++P   +W +LLG+C +H + +LAE A  ++ +LEP 
Sbjct: 365 CMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPN 424

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
           ++G+YVLL+++YA+   W +V+++++ +   G++KVPG S +EV  +++ F+  D+ HPQ
Sbjct: 425 HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQ 484

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
            + ++A L  ++  ++ +GYVPQ   V  D++ EEKE  V+ HSEK+A+AF LI+T +  
Sbjct: 485 SDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERS 544

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            I + KNLR+C DCH   K +SK  N+EI+VRD +RFHHF+NG CSC DYW
Sbjct: 545 PITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 155/329 (47%), Gaps = 22/329 (6%)

Query: 53  NELIQSLCKQGNLRQALDV-----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N LI+   + GN   A  +     +S    P  HTY  L+ + T    +     +HS + 
Sbjct: 89  NTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVI 148

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            +GF    ++   L+++Y++   V  A  VFDK   + +  WN++       G+ EE L 
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           LY  MN    GI+ D FT   +L AC         L  GK +H  +++ G    +H    
Sbjct: 209 LYTEMN--SKGIKPDGFTIVSLLSACAK----IGALTLGKRVHVYMIKVGLTRNLHSSNV 262

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+D+YAR G V  A  +F +M  KN VSW+++I   A NG   EA+ELF+ M   +  L 
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM-ESTEGLL 321

Query: 288 PNSVTMVSVLQACAALAALEQG-----KMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
           P  +T V +L AC+    +++G     +M   Y +   ++        +V + AR G+++
Sbjct: 322 PCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHF----GCMVDLLARAGQVK 377

Query: 343 LGQCVFDHMDKR-DVVSWNSLISSYGVHG 370
                   M  + +VV W +L+ +  VHG
Sbjct: 378 KAYEYIKSMPMQPNVVIWRTLLGACTVHG 406


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/593 (38%), Positives = 346/593 (58%), Gaps = 39/593 (6%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            +H+HL           ++++ +V +   S   A+ +F       +  WN   R+     
Sbjct: 33  QLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGD 92

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
              + + L+ R+      I  D +T ++VLKAC         +++GK +H  V + G   
Sbjct: 93  SPADAISLFYRLREFD--ISPDHYTCSFVLKACSR----LLDVRNGKIVHGYVEKLGLQS 146

Query: 221 IVHIMTTLIDMYARFG--------------------CVMYAGFV-----------FSQMA 249
            + +   ++ +YA  G                     +M A  V           F++M 
Sbjct: 147 NMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMP 206

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            +NV SW++MI  YA+ G + EA++LF EM  E   L PN VT+V+VL ACA +  L  G
Sbjct: 207 ERNVRSWTSMIGGYAQCGKSKEAIDLFLEM--EDAGLLPNEVTVVAVLVACADMGNLVLG 264

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           + IH +  R G +  + V + L+ MY +CG LE    +FD+M++R VVSW+++I+    H
Sbjct: 265 RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAH 324

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G    A+ +F +MI  GV P+ ++F+ +L ACSH G+VE+G+  F SM +++ I P +EH
Sbjct: 325 GRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEH 384

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
           Y CMVDL  RA  L+EA + I ++ I P   VWG+LLG C++H N++LAE A++ L +L+
Sbjct: 385 YGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLD 444

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFH 549
           P N G YV+L+++YA A  W++V RV++L+  RG++K PG S I V+  +Y+FV+ D+ H
Sbjct: 445 PLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTH 504

Query: 550 PQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSK 609
           PQ E++      L   MK KGYVP T VVL D++ ++KE+ +  HSEKLAV FGLI T+ 
Sbjct: 505 PQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTP 564

Query: 610 GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           G  IRI KNLR+CEDCH+  K IS  + +EI+VRD NRFH F+NG CSCGDYW
Sbjct: 565 GTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 168/376 (44%), Gaps = 44/376 (11%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P  +T   +L +C+    + +   VH ++   G   + FL   ++++Y+    +  AR 
Sbjct: 110 SPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARK 169

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM------------------------ 172
           VFDK  +R +  WN +   L   G  E   +L+  M                        
Sbjct: 170 VFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEA 229

Query: 173 -----NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
                     G+  +  T   VL AC  +  G  +L  G+ IH    R GY   + +  T
Sbjct: 230 IDLFLEMEDAGLLPNEVTVVAVLVAC--ADMGNLVL--GRRIHDFSNRSGYEKNIRVCNT 285

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           LIDMY + GC+  A  +F  M  + VVSWSAMIA  A +G A +AL LF +MI  +  + 
Sbjct: 286 LIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMI--NTGVK 343

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKL-ELGQ 345
           PN+VT + +L AC+ +  +E+G+     + R  G+   +     +V +++R G L E  +
Sbjct: 344 PNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHE 403

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS---FVSVLGACS 402
            + +     + V W +L+    VH    K I++ +E   H     P++   +V +    +
Sbjct: 404 FIMNMPIAPNGVVWGALLGGCKVH----KNIKLAEEATRHLSKLDPLNDGYYVVLSNIYA 459

Query: 403 HAGLVEEGKMLFESMR 418
            AG  E+   + + MR
Sbjct: 460 EAGRWEDVARVRKLMR 475



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 106/218 (48%), Gaps = 12/218 (5%)

Query: 50  RNKNELIQSLCKQGNLRQALDV-LSIEPN---PTQHTYELLLLSCTHHNSLSDALNVHSH 105
           R+   +I    + G  ++A+D+ L +E     P + T   +L++C    +L     +H  
Sbjct: 211 RSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDF 270

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
              +G++++  +   LI++Y     ++DA  +FD    RT+  W+A+   L   GR E+ 
Sbjct: 271 SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDA 330

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHI 224
           L L+ +M    TG++ +  T+  +L AC        +++ G++  AS+ R +G    +  
Sbjct: 331 LALFNKM--INTGVKPNAVTFIGILHAC----SHMGMVEKGRKYFASMTRDYGIVPRIEH 384

Query: 225 MTTLIDMYARFGCVMYA-GFVFSQMAVKNVVSWSAMIA 261
              ++D+++R G +  A  F+ +     N V W A++ 
Sbjct: 385 YGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLG 422


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/652 (36%), Positives = 371/652 (56%), Gaps = 49/652 (7%)

Query: 46  SLSSRNK---NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNV 102
           S+  RN+   + +I +L   G +  A+ V   +P  +      L+        + DA  +
Sbjct: 285 SMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARIL 344

Query: 103 HSHLTDNGFDQDPFLVT--KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
              + +      P +V+   LI  Y     V++A+ +FDK   R    W  +       G
Sbjct: 345 FEQIPE------PIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNG 398

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
           R EE L L + ++ +G  +     + T +  AC         L+ G ++H+  ++ G   
Sbjct: 399 RSEEALGLLQELHRSG--MLPSLSSLTSIFFAC----SNIVALETGTQVHSLAVKVGCQF 452

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
                  LI MY +   + YA  VFS+M  K++VSW++ +A   +N +  EA   F  M+
Sbjct: 453 NSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNML 512

Query: 281 MES------------------------------HDLCPNSVTMVSVLQACAALAALEQGK 310
                                            H+L PNS  +  +L  C +L A + G+
Sbjct: 513 SRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSPILTILLGVCGSLGASKIGQ 571

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            IH   ++ G+DS L V +AL++MY +CG  +  + +FD M++RD+ +WN++I+ Y  HG
Sbjct: 572 QIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHG 630

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
            G +AI++++ M   GV P+ ++FV +L ACSHAGLV+EG   F+SM +++ + P  EHY
Sbjct: 631 LGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHY 690

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
           ACMVDLLGR   ++ A + I D+ IEP   +W +LLG+C+IH N E+ +RA+++LF +EP
Sbjct: 691 ACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEP 750

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
           +NAGNYV+L+++Y++  MW EV  V+++++ +G+ K PG S  ++K KM+SFV+ D+ H 
Sbjct: 751 SNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHE 810

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           Q E++ A L  L   +K  GYVP T+ VL+D+D E+KE  +L HSEKLAVA+ L+ T KG
Sbjct: 811 QIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKG 870

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             I+I KNLR+C DCH+F KF+S    ++I +RD NRFHHFRNG CSC D+W
Sbjct: 871 MPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 149/314 (47%), Gaps = 23/314 (7%)

Query: 110 GFDQDPFLVTKLINVYSHFDSV-DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           GF++D  + T ++NVYS   SV D A   F+    R  Y W+ +  AL+  GR +  + +
Sbjct: 254 GFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAV 313

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY-NGIVHIMTT 227
           Y R        R+   T                L + G+   A +L       IV     
Sbjct: 314 YERDPVKSIACRTALIT---------------GLAQCGRIDDARILFEQIPEPIVVSWNA 358

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           LI  Y + G V  A  +F +M  +N +SW+ MIA YA+NG + EAL L +E+      + 
Sbjct: 359 LITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQEL--HRSGML 416

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+  ++ S+  AC+ + ALE G  +H   ++ G        +AL+TMY +C  +E  + V
Sbjct: 417 PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQV 476

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F  M  +D+VSWNS +++   +    +A   F  M+    S   +S+ +++ A +HA   
Sbjct: 477 FSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNML----SRDDVSWTTIISAYAHAEQS 532

Query: 408 EEGKMLFESMRKEH 421
            E    F++M  EH
Sbjct: 533 NEAMGAFKTMFCEH 546



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/351 (20%), Positives = 150/351 (42%), Gaps = 23/351 (6%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           ++  Y H   + DAR++F+K   R +  W  +           +  +++ +M+    G+ 
Sbjct: 164 MLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH--REGLL 221

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D+  +   L A      G   L   + +    L+ G+   V I T ++++Y+R   V+ 
Sbjct: 222 PDQSNFASALSAVK----GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLD 277

Query: 241 AGF-VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
                F  M  +N  +WS MIA  +  G    A+ ++        D   +     +++  
Sbjct: 278 TAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE------RDPVKSIACRTALITG 331

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
            A    ++  +++   I     + I+   +AL+T Y + G +   + +FD M  R+ +SW
Sbjct: 332 LAQCGRIDDARILFEQI----PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISW 387

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
             +I+ Y  +G   +A+ + +E+   G+ PS  S  S+  ACS+   +E G  +     K
Sbjct: 388 AGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK 447

Query: 420 EHMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
              +      +AC  ++ + G+   +E A ++   + +      W S L +
Sbjct: 448 ---VGCQFNSFACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA 494



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 131/360 (36%), Gaps = 103/360 (28%)

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           V +AR VFD   RR I  WN++  A    G  +   +LY  ++G                
Sbjct: 50  VGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISG---------------- 93

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
                                        G +     L+  Y R G V+ A  VF  M  
Sbjct: 94  -----------------------------GNMRTGAILLSGYGRLGRVLEARRVFDGMLE 124

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           +N V+W+AMI+CY +NG    A  LF  M   S D+                        
Sbjct: 125 RNTVAWNAMISCYVQNGDITMARRLFDAM--PSRDVS-------------------SWNS 163

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLEL--GQCVFDHMDKRDVVSWNSLISSYGV 368
           M+ GY                      C  L++   + +F+ M +R++VSW  +IS YG 
Sbjct: 164 MLTGY----------------------CHSLQMVDARNLFEKMPERNLVSWTVMISGYGR 201

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR----KEHMIR 424
               GKA  IF +M   G+ P   +F S L A    G ++    + ES+R    K    R
Sbjct: 202 IENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLD----VLESLRVLALKTGFER 257

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC----RIHCNVELAER 480
             V   A +       + L+ A K  E + IE     W +++ +     RI   + + ER
Sbjct: 258 DVVIGTAILNVYSRDTSVLDTAIKFFESM-IERNEYTWSTMIAALSHGGRIDAAIAVYER 316



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           SA +    R G++   + VFD M +RD+++WNS+IS+Y  +G    A  ++  +    + 
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
              I    +L      G V E + +F+ M + + +
Sbjct: 98  TGAI----LLSGYGRLGRVLEARRVFDGMLERNTV 128


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/610 (36%), Positives = 347/610 (56%), Gaps = 43/610 (7%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           L + C    +  DA  V     D   ++D    T ++  Y     V  AR VF++   + 
Sbjct: 203 LYMKCESPEATRDARKV----LDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKF 258

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
             VWNA+      +G   E  EL+RRM      +  D FT+T VL AC        L  H
Sbjct: 259 DVVWNAMISGYVHSGMAVEAFELFRRM--VLERVPLDEFTFTSVLSACA----NVGLFAH 312

Query: 206 GKEIHASVLRHGYNGI----VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
           GK +H  ++R   N +    + +   L+  Y++ G +  A  +F  M +K+VVSW+ +++
Sbjct: 313 GKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILS 372

Query: 262 CYARNGMAFEALELFREMI-----------------------------MESHDLCPNSVT 292
            Y  +    +A+E+F EM                              M S ++ P   T
Sbjct: 373 GYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYT 432

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
               + AC  L AL+ GK +HG+I++ G +      +AL+TMYARCG ++    +F  M 
Sbjct: 433 YAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP 492

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
             D VSWN++IS+ G HG+G +A+++F  M+  G+ P  ISF++VL AC+H+GLV+EG  
Sbjct: 493 NIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFR 552

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            FESM+++  I P  +HY  ++DLLGRA ++ EA  +I+ +  EP P +W ++L  CR  
Sbjct: 553 YFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTS 612

Query: 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
            ++EL   A+ +LF++ P + G Y+LL++ Y+AA  W +  RV++L+  RG++K PG S 
Sbjct: 613 GDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSW 672

Query: 533 IEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVL 592
           IE   K++ F+  D  HP+  +++  L  + A+M++ GYVP TKVVL+D++  +KE I+ 
Sbjct: 673 IEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILF 732

Query: 593 GHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652
            HSE+LAV FGL+N   G T+ + KNLR+C+DCH+   F+SK   +EI+VRDV RFHHF+
Sbjct: 733 AHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFK 792

Query: 653 NGVCSCGDYW 662
           +G CSCG+YW
Sbjct: 793 DGECSCGNYW 802



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 39/224 (17%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQM--AVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           T+L+  YA    +  A   F  +  A ++ V  +A+I+ YAR   A  A+ +FR + + S
Sbjct: 92  TSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSL-LAS 150

Query: 284 HDLCPNSVTMVSVLQACAALA--ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
             L P+  +  ++L A   L   ++     +H  +L+ G    L V +ALV +Y +C   
Sbjct: 151 GSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESP 210

Query: 342 EL---GQCVFDHMDKRD-------------------------------VVSWNSLISSYG 367
           E     + V D M  +D                                V WN++IS Y 
Sbjct: 211 EATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYV 270

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             G   +A ++F+ M+   V     +F SVL AC++ GL   GK
Sbjct: 271 HSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGK 314



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 91/217 (41%), Gaps = 18/217 (8%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P  +TY   + +C    +L     +H H+   GF+        LI +Y+   +V +A  
Sbjct: 427 KPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHL 486

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +F          WNA+  AL   G G E LEL+ RM     GI  DR ++  VL AC  S
Sbjct: 487 MFLVMPNIDSVSWNAMISALGQHGHGREALELFDRM--VAEGIYPDRISFLTVLTACNHS 544

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIV---HIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                L+  G     S+ R    GI+      T LID+  R G +  A  +   M  +  
Sbjct: 545 ----GLVDEGFRYFESMKRD--FGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPT 598

Query: 254 VS-WSAMIA-CYARNGM---AFEALELFREMIMESHD 285
            S W A+++ C     M   A  A +LF+  +   HD
Sbjct: 599 PSIWEAILSGCRTSGDMELGAHAADQLFK--MTPQHD 633


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/548 (41%), Positives = 339/548 (61%), Gaps = 20/548 (3%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           T ++  Y+    ++ AR  FD    R++  WNA+       G  EE L L+  M     G
Sbjct: 198 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM--VNAG 255

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH----IMTTLIDMYAR 234
           I  D  T+  V+ AC  SS G   L       AS++R  +   +     + T L+DMYA+
Sbjct: 256 IEPDETTWVTVISAC--SSRGDPCLA------ASLVRTLHQKRIQLNCFVRTALLDMYAK 307

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
           FG +  A  +F+ M  +NVV+W++MIA YA+NG +  A+ELF+EMI  +  L P+ VTMV
Sbjct: 308 FGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMIT-AKKLTPDEVTMV 366

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           SV+ AC  L ALE G  +  ++    +   +   +A++ MY+RCG +E  + VF  M  R
Sbjct: 367 SVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR 426

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           DVVS+N+LIS +  HG+G +AI +   M   G+ P  ++F+ VL ACSHAGL+EEG+ +F
Sbjct: 427 DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVF 486

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
           ES++      P+++HYACMVDLLGR  +LE+A + +E + +EP   V+GSLL + RIH  
Sbjct: 487 ESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQ 541

Query: 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
           VEL E A+ +LFELEP N+GN++LL+++YA+A  W +V+R++  ++  G++K  G S +E
Sbjct: 542 VELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVE 601

Query: 535 VKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGH 594
              K++ F+  D  H + + ++ LLI L  +M+E GY+     VL D++ EEKE IV  H
Sbjct: 602 YGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTH 661

Query: 595 SEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
           SEKLA+ + L+ +  G  IR+ KNLR+C DCH+  K ISK   + I+VRD NRFH F +G
Sbjct: 662 SEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDG 721

Query: 655 VCSCGDYW 662
           +CSC DYW
Sbjct: 722 LCSCKDYW 729



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 189/419 (45%), Gaps = 80/419 (19%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV-FDKTRRRTIYVWNALFRALTLA 159
            +H+ +  N      + V  LIN  +   +     H+ F+ T    ++V+ ++ R  +  
Sbjct: 19  QLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYSHL 78

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
               +V+ +Y +M G G  +R D F Y  ++K+      GF         HA VL+ G+ 
Sbjct: 79  QDHAKVVLMYEQMQGCG--VRPDAFVYPILIKSAGTGGIGF---------HAHVLKLGHG 127

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQ-------------------------------- 247
               +   +IDMYAR G + +A  VF +                                
Sbjct: 128 SDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFD 187

Query: 248 -MAVKNVVSWSAMIACYAR-------------------------------NGMAFEALEL 275
            M  +NV++W+AM+  YA+                               NG+A EAL L
Sbjct: 188 VMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRL 247

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F EM+  +  + P+  T V+V+ AC++         +   + ++ +     V +AL+ MY
Sbjct: 248 FDEMV--NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMY 305

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY-HGVSPSPISF 394
           A+ G L+  + +F+ M  R+VV+WNS+I+ Y  +G    AI++FKEMI    ++P  ++ 
Sbjct: 306 AKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTM 365

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           VSV+ AC H G +E G  +   +  E+ I+ S+  +  M+ +  R   +E+A ++ +++
Sbjct: 366 VSVISACGHLGALELGNWVVRFL-TENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 423



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 140/306 (45%), Gaps = 21/306 (6%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N ++    + G   +AL +        IEP+ T  T+  ++ +C+       A ++   L
Sbjct: 229 NAMLSGYAQNGLAEEALRLFDEMVNAGIEPDET--TWVTVISACSSRGDPCLAASLVRTL 286

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
                  + F+ T L+++Y+ F  +D AR +F+    R +  WN++       G+    +
Sbjct: 287 HQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAI 346

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIM 225
           EL++ M      I + + T   V    V S+CG    L+ G  +   +  +     +   
Sbjct: 347 ELFKEM------ITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGH 400

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
             +I MY+R G +  A  VF +MA ++VVS++ +I+ +A +G   EA+ L     M+   
Sbjct: 401 NAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMS--TMKEGG 458

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + P+ VT + VL AC+    LE+G+ +   I    +D      + +V +  R G+LE  +
Sbjct: 459 IEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDH----YACMVDLLGRVGELEDAK 514

Query: 346 CVFDHM 351
              + M
Sbjct: 515 RTMERM 520


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/652 (36%), Positives = 371/652 (56%), Gaps = 49/652 (7%)

Query: 46  SLSSRNK---NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNV 102
           S+  RN+   + +I +L   G +  A+ V   +P  +      L+        + DA  +
Sbjct: 285 SMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARIL 344

Query: 103 HSHLTDNGFDQDPFLVT--KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
              + +      P +V+   LI  Y     V++A+ +FDK   R    W  +       G
Sbjct: 345 FEQIPE------PIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNG 398

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
           R EE L L + ++ +G  +     + T +  AC         L+ G ++H+  ++ G   
Sbjct: 399 RSEEALGLLQELHRSG--MLPSLSSLTSIFFAC----SNIVALETGTQVHSLAVKVGCQF 452

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
                  LI MY +   + YA  VFS+M  K++VSW++ +A   +N +  EA   F  M+
Sbjct: 453 NSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNML 512

Query: 281 MES------------------------------HDLCPNSVTMVSVLQACAALAALEQGK 310
                                            H+L PNS  +  +L  C +L A + G+
Sbjct: 513 SRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSPILTILLGVCGSLGASKIGQ 571

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            IH   ++ G+DS L V +AL++MY +CG  +  + +FD M++RD+ +WN++I+ Y  HG
Sbjct: 572 QIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHG 630

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
            G +AI++++ M   GV P+ ++FV +L ACSHAGLV+EG   F+SM +++ + P  EHY
Sbjct: 631 LGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHY 690

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
           ACMVDLLGR   ++ A + I D+ IEP   +W +LLG+C+IH N E+ +RA+++LF +EP
Sbjct: 691 ACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEP 750

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
           +NAGNYV+L+++Y++  MW EV  V+++++ +G+ K PG S  ++K KM+SFV+ D+ H 
Sbjct: 751 SNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHE 810

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           Q E++ A L  L   +K  GYVP T+ VL+D+D E+KE  +L HSEKLAVA+ L+ T KG
Sbjct: 811 QIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKG 870

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             I+I KNLR+C DCH+F KF+S    ++I +RD NRFHHFRNG CSC D+W
Sbjct: 871 MPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 149/314 (47%), Gaps = 23/314 (7%)

Query: 110 GFDQDPFLVTKLINVYSHFDSV-DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           GF++D  + T ++NVYS   SV D A   F+    R  Y W+ +  AL+  GR +  + +
Sbjct: 254 GFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAV 313

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY-NGIVHIMTT 227
           Y R        R+   T                L + G+   A +L       IV     
Sbjct: 314 YERDPVKSIACRTALIT---------------GLAQCGRIDDARILFEQIPEPIVVSWNA 358

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           LI  Y + G V  A  +F +M  +N +SW+ MIA YA+NG + EAL L +E+      + 
Sbjct: 359 LITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQEL--HRSGML 416

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+  ++ S+  AC+ + ALE G  +H   ++ G        +AL+TMY +C  +E  + V
Sbjct: 417 PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQV 476

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F  M  +D+VSWNS +++   +    +A   F  M+    S   +S+ +++ A +HA   
Sbjct: 477 FSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNML----SRDDVSWTTIISAYAHAEQS 532

Query: 408 EEGKMLFESMRKEH 421
            E    F++M  EH
Sbjct: 533 NEAMGAFKTMFCEH 546



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/351 (20%), Positives = 150/351 (42%), Gaps = 23/351 (6%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           ++  Y H   + DAR++F+K   R +  W  +           +  +++ +M+    G+ 
Sbjct: 164 MLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH--REGLL 221

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D+  +   L A      G   L   + +    L+ G+   V I T ++++Y+R   V+ 
Sbjct: 222 PDQSNFASALSAVK----GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLD 277

Query: 241 AGF-VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
                F  M  +N  +WS MIA  +  G    A+ ++        D   +     +++  
Sbjct: 278 TAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE------RDPVKSIACRTALITG 331

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
            A    ++  +++   I     + I+   +AL+T Y + G +   + +FD M  R+ +SW
Sbjct: 332 LAQCGRIDDARILFEQI----PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISW 387

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
             +I+ Y  +G   +A+ + +E+   G+ PS  S  S+  ACS+   +E G  +     K
Sbjct: 388 AGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK 447

Query: 420 EHMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
              +      +AC  ++ + G+   +E A ++   + +      W S L +
Sbjct: 448 ---VGCQFNSFACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA 494



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 131/360 (36%), Gaps = 103/360 (28%)

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           V +AR VFD   RR I  WN++  A    G  +   +LY  ++G                
Sbjct: 50  VGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISG---------------- 93

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
                                        G +     L+  Y R G V+ A  VF  M  
Sbjct: 94  -----------------------------GNMRTGAILLSGYGRLGRVLEARRVFDGMLE 124

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           +N V+W+AMI+CY +NG    A  LF  M   S D+                        
Sbjct: 125 RNTVAWNAMISCYVQNGDITMARRLFDAM--PSRDVS-------------------SWNS 163

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLEL--GQCVFDHMDKRDVVSWNSLISSYGV 368
           M+ GY                      C  L++   + +F+ M +R++VSW  +IS YG 
Sbjct: 164 MLTGY----------------------CHSLQMVDARNLFEKMPERNLVSWTVMISGYGR 201

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR----KEHMIR 424
               GKA  IF +M   G+ P   +F S L A    G ++    + ES+R    K    R
Sbjct: 202 IENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLD----VLESLRVLALKTGFER 257

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC----RIHCNVELAER 480
             V   A +       + L+ A K  E + IE     W +++ +     RI   + + ER
Sbjct: 258 DVVIGTAILNVYSRDTSVLDTAIKFFESM-IERNEYTWSTMIAALSHGGRIDAAIAVYER 316



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           SA +    R G++   + VFD M +RD+++WNS+IS+Y  +G    A  ++  +    + 
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
              I    +L      G V E + +F+ M + + +
Sbjct: 98  TGAI----LLSGYGRLGRVLEARRVFDGMLERNTV 128


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/616 (36%), Positives = 366/616 (59%), Gaps = 26/616 (4%)

Query: 61  KQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           ++GN + +L +L       ++PN  + T+   L +C     + + + +H     +GF+  
Sbjct: 82  QEGNAKGSLALLCEMGYSGVKPN--EFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWV 139

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             +    I++YS    +  A  VF+K   R +  WNA+    T  G G + L L++RM G
Sbjct: 140 SVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQG 199

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH--IMTTLIDMY 232
            G     D FT+T  LKAC A       ++ G +IHAS++  G+   +   I + ++D+Y
Sbjct: 200 QGE--VPDEFTFTSTLKACGA----LGAIRGGTQIHASLITRGFPISIRNIIASAIVDLY 253

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           A+ G +  A  VF ++  KN++SWSA+I  +A+ G   EA++LFR++     ++  +   
Sbjct: 254 AKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNV--DGFV 311

Query: 293 MVSVLQACAALAALEQGKMIHGYILR--RGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           +  ++   A LA +EQGK +H YIL+   GLD  + V ++++ MY +CG  E  + +F  
Sbjct: 312 LSIMMGVFADLALVEQGKQMHCYILKVPSGLD--ISVANSIIDMYLKCGLTEEAERLFSE 369

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M  R+VVSW  +I+ YG HG G KAI +F  M   G+    ++++++L ACSH+GL+ E 
Sbjct: 370 MQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRES 429

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           +  F  +   H ++P++EHYACMVD+LGRA +L+EA  +IE+++++P   +W +LL +CR
Sbjct: 430 QEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACR 489

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
           +H N+E+     + LF ++  N  NYV+++++YA A  W E +RV++L++A+GL+K  G+
Sbjct: 490 VHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQ 549

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK-GYVPQTKVVLYDLDAEEKER 589
           S +E+ ++++ F   D+ HP  E++H +L  +   +KE+ GY    +  L+D++ E KE 
Sbjct: 550 SWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEE 609

Query: 590 IVLGHSEKLAVAFGLI---NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
            +  HSEKLA+   L+      KG  IR+ KNLR+C DCH F K +SK   K  +VRD N
Sbjct: 610 NLRVHSEKLAIGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDAN 669

Query: 647 RFHHFRNGVCSCGDYW 662
           RFH F +G+CSCGDYW
Sbjct: 670 RFHRFEDGLCSCGDYW 685



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 173/330 (52%), Gaps = 10/330 (3%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LL +C+ +      L VH+   + GF  D  +   LI++Y     VD A  VFD+   R 
Sbjct: 10  LLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERN 69

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  W AL       G  +  L L   M    +G++ + FT++  LKAC A      ++++
Sbjct: 70  VVSWTALMCGYLQEGNAKGSLALLCEMG--YSGVKPNEFTFSTSLKACGA----LGVVEN 123

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           G +IH   ++ G+  +  +    IDMY++ G +  A  VF++M  +N+VSW+AMIA +  
Sbjct: 124 GMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTH 183

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-SI 324
            G   ++L LF+   M+     P+  T  S L+AC AL A+  G  IH  ++ RG   SI
Sbjct: 184 EGNGRKSLVLFQR--MQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISI 241

Query: 325 LPVV-SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
             ++ SA+V +YA+CG L   Q VFD +++++++SW++LI  +   G   +A+ +F+++ 
Sbjct: 242 RNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLR 301

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKML 413
               +        ++G  +   LVE+GK +
Sbjct: 302 ESVSNVDGFVLSIMMGVFADLALVEQGKQM 331



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 149/290 (51%), Gaps = 14/290 (4%)

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
           S+R     +L+ C  +     L   G ++HA+ +  G+   + +   LIDMY +   V  
Sbjct: 2   SERQRLAKLLRNCSKNG----LFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDL 57

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF +M  +NVVSW+A++  Y + G A  +L L  EM      + PN  T  + L+AC
Sbjct: 58  ACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSG--VKPNEFTFSTSLKAC 115

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
            AL  +E G  IHG  ++ G + +  V +A + MY++CG++ + + VF+ M  R++VSWN
Sbjct: 116 GALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWN 175

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           ++I+ +   G G K++ +F+ M   G  P   +F S L AC   G +  G  +  S+   
Sbjct: 176 AMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITR 235

Query: 421 HM---IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV-WGSLL 466
                IR  +   + +VDL  +   L EA K+ +  RIE    + W +L+
Sbjct: 236 GFPISIRNIIA--SAIVDLYAKCGYLFEAQKVFD--RIEQKNLISWSALI 281



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 111/290 (38%), Gaps = 48/290 (16%)

Query: 55  LIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           LIQ   ++GNL +A+D+         N       +++        +     +H ++    
Sbjct: 280 LIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVP 339

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              D  +   +I++Y      ++A  +F + + R +  W  +       G GE+ + L+ 
Sbjct: 340 SGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFN 399

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           RM     GI  D   Y  +L AC  S     L++  +E  + +  +      H M   I+
Sbjct: 400 RMQ--LDGIELDEVAYLALLSACSHS----GLIRESQEYFSRLCNN------HQMKPNIE 447

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
            YA                         M+    R G   EA  L     +E+  L PN 
Sbjct: 448 HYA------------------------CMVDILGRAGQLKEAKNL-----IENMKLKPNE 478

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT-MYARCG 339
               ++L AC     LE G+ + G IL R +D+  PV   +++ +YA  G
Sbjct: 479 GIWQTLLSACRVHGNLEIGREV-GEILFR-MDTDNPVNYVMMSNIYAEAG 526


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/643 (35%), Positives = 357/643 (55%), Gaps = 21/643 (3%)

Query: 32  VCCCVSLNSSTTPTSLSSRNK-------NELIQSLCKQGNLRQALDVLSIEPN----PTQ 80
           +CC +   S+     + S+ K       N +I+ L  +     A+ +          P  
Sbjct: 55  LCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNN 114

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
            T   +L +C     +   L +HS L   G+D D F+ T L+++Y   D+ DDA  VFD 
Sbjct: 115 FTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDD 174

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV-ASSCG 199
              + +  W A+      +G   E +  ++++     G++ D F+   VL AC     C 
Sbjct: 175 IPDKNVVSWTAIITGYISSGHFREAIGAFKKL--LEMGLKPDSFSLVKVLAACARLGDC- 231

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
                 G+ I   +   G    V + T+L+DMY + G +  A  +FS M  K++VSWS M
Sbjct: 232 ----TSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTM 287

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I  YA NG+  +AL+LF +M  +S +L P+  TMV VL ACA L AL+ G      + R 
Sbjct: 288 IQGYAFNGLPQQALDLFFQM--QSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRN 345

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
              S   + +AL+ MY++CG +     +F  M K+D V WN+++    ++G+      +F
Sbjct: 346 EFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLF 405

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
             +  HG+ P   +F+ +L  C+H G V EG+  F +M++   + PS+EHY CMVDLLGR
Sbjct: 406 SLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGR 465

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           A  L EA ++I ++ ++P   VWG+LLG C++H +  LAE+  K+L ELEP N+GNYV L
Sbjct: 466 AGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQL 525

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           +++Y+    W+E ++++  ++ + +QK+   S IE+   ++ F+  D+ H   E+++A L
Sbjct: 526 SNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKL 585

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
             L  E+K  G+VP T+ VL+D++ EEKE  +  HSEKLAVAFGLI +     IR+ KNL
Sbjct: 586 DELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNL 645

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCH   K ISK   +EI++RD NRFH F +G CSC DYW
Sbjct: 646 RVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 201/403 (49%), Gaps = 22/403 (5%)

Query: 72  LSIEPNPTQHTYELLLLSCTHHNSLSDALN-------VHSHLTDNGFDQDPFLVTKLINV 124
           ++I  NP+   +   L      N LS+ LN       +H+ L     DQD +L+  ++  
Sbjct: 1   MTILTNPSSPVFSKAL---EIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCC 57

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
              F S + ++ VF + +   I++WN + R L      ++ + LY  M   G G   + F
Sbjct: 58  ALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMR--GGGFLPNNF 115

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           T  +VLKAC         ++ G +IH+ +++ GY+  V + T+L+ +Y +      A  V
Sbjct: 116 TIPFVLKACARKLD----VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKV 171

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F  +  KNVVSW+A+I  Y  +G   EA+  F++++     L P+S ++V VL ACA L 
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLL--EMGLKPDSFSLVKVLAACARLG 229

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
               G+ I  YI   G+   + V ++L+ MY +CG LE    +F  M ++D+VSW+++I 
Sbjct: 230 DCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQ 289

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM-RKEHMI 423
            Y  +G   +A+ +F +M    + P   + V VL AC+  G ++ G      M R E + 
Sbjct: 290 GYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLS 349

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
            P +     ++D+  +   + +A +I   ++ +    VW +++
Sbjct: 350 NPVLG--TALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNAMM 389


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/587 (39%), Positives = 345/587 (58%), Gaps = 15/587 (2%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           ++ ++  ++  C +   L     +H  +   GF  D  + T L+  YS   ++ DA  +F
Sbjct: 294 SESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLF 353

Query: 139 DKTR-RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
            +      +  W A+          EE ++L+  M   G  +R + FTY+ +L A    S
Sbjct: 354 KEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKG--VRPNEFTYSVILTALPVIS 411

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                     E+HA V++  Y     + T L+D Y + G V  A  VFS +  K++V+WS
Sbjct: 412 --------PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWS 463

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL-AALEQGKMIHGYI 316
           AM+A YA+ G    A+++F E+      + PN  T  S+L  CAA  A++ QGK  HG+ 
Sbjct: 464 AMLAGYAQTGETEAAIKMFGELT--KGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFA 521

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++  LDS L V SAL+TMYA+ G +E  + VF    ++D+VSWNS+IS Y  HG   KA+
Sbjct: 522 IKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKAL 581

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +FKEM    V    ++F+ V  AC+HAGLVEEG+  F+ M ++  I P+ EH +CMVDL
Sbjct: 582 DVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDL 641

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
             RA +LE+A K+IE++    G  +W ++L +CR+H   EL   A++++  ++P ++  Y
Sbjct: 642 YSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAY 701

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++YA +  W E  +V++L+  R ++K PG S IEVK K YSF++ D  HP  +Q++
Sbjct: 702 VLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIY 761

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L +LS  +K+ GY P T  VL D+D E KE ++  HSE+LA+AFGLI T KG  + I 
Sbjct: 762 MKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLII 821

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF-RNGVCSCGDYW 662
           KNLR+C DCH   K I+K   +EI+VRD NRFHHF  +GVCSCGD+W
Sbjct: 822 KNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 189/398 (47%), Gaps = 16/398 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P   T+   L            L VH+ +  NG D+   +   LIN+Y    +V  AR 
Sbjct: 191 QPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARI 250

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FDKT  +++  WN++       G   E L ++  M      +R    ++  V+K C   
Sbjct: 251 LFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMR--LNYVRLSESSFASVIKLC--- 305

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA-VKNVVS 255
                 L+  +++H SV+++G+    +I T L+  Y++   ++ A  +F ++  V NVVS
Sbjct: 306 -ANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVS 364

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+AMI+ + +N    EA++LF E  M+   + PN  T   +L A   ++  E    +H  
Sbjct: 365 WTAMISGFLQNDGKEEAVDLFSE--MKRKGVRPNEFTYSVILTALPVISPSE----VHAQ 418

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           +++   +    V +AL+  Y + GK+E    VF  +D +D+V+W+++++ Y   G    A
Sbjct: 419 VVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAA 478

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGL-VEEGKMLFESMRKEHMIRPSVEHYACMV 434
           I++F E+   G+ P+  +F S+L  C+     + +GK  F     +  +  S+   + ++
Sbjct: 479 IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQ-FHGFAIKSRLDSSLCVSSALL 537

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            +  +   +E A ++ +  R E     W S++     H
Sbjct: 538 TMYAKKGNIESAEEVFKRQR-EKDLVSWNSMISGYAQH 574



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 155/302 (51%), Gaps = 19/302 (6%)

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           +A ++FDK+  R    + +L    +  GR +E   L+  +N    G+  D   ++ VLK 
Sbjct: 45  NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLF--LNIHRLGMEMDCSIFSSVLK- 101

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
            V+++    L   G+++H   ++ G+   V + T+L+D Y +         VF +M  +N
Sbjct: 102 -VSATLCDELF--GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERN 158

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           VV+W+ +I+ YARN M  E L LF  M M++    PNS T  + L   A      +G  +
Sbjct: 159 VVTWTTLISGYARNSMNDEVLTLF--MRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQV 216

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           H  +++ GLD  +PV ++L+ +Y +CG +   + +FD  + + VV+WNS+IS Y  +G  
Sbjct: 217 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLD 276

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACS-----------HAGLVEEGKMLFESMRKEH 421
            +A+ +F  M  + V  S  SF SV+  C+           H  +V+ G +  +++R   
Sbjct: 277 LEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTAL 336

Query: 422 MI 423
           M+
Sbjct: 337 MV 338



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 173/368 (47%), Gaps = 15/368 (4%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            +H      GF  D  + T L++ Y    +  D R VFD+ + R +  W  L        
Sbjct: 114 QLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNS 173

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
             +EVL L+ RM   GT  + + FT+   L        G      G ++H  V+++G + 
Sbjct: 174 MNDEVLTLFMRMQNEGT--QPNSFTFAAALGVLAEEGVG----GRGLQVHTVVVKNGLDK 227

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            + +  +LI++Y + G V  A  +F +  VK+VV+W++MI+ YA NG+  EAL +F  M 
Sbjct: 228 TIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMR 287

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           +    L  +S    SV++ CA L  L   + +H  +++ G      + +AL+  Y++C  
Sbjct: 288 LNYVRLSESS--FASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTA 345

Query: 341 LELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           +     +F  +    +VVSW ++IS +  +    +A+ +F EM   GV P+  ++  +L 
Sbjct: 346 MLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILT 405

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           A       E    +   + K +  R S    A ++D   +  K+EEAAK+   +  +   
Sbjct: 406 ALPVISPSE----VHAQVVKTNYERSSTVGTA-LLDAYVKLGKVEEAAKVFSGID-DKDI 459

Query: 460 KVWGSLLG 467
             W ++L 
Sbjct: 460 VAWSAMLA 467


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/641 (36%), Positives = 359/641 (56%), Gaps = 72/641 (11%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS--HFDSVDDARHVFDKTR 142
           L L       SL     +H+ +  +G  QD ++   L+  Y+  HF + D A  VF    
Sbjct: 35  LKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIP 94

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
              +++WN + +      +  + +  Y RM       R ++FTY  + KAC  +      
Sbjct: 95  NPNVFIWNIVIKGCLENNKLFKAIYFYGRMV---IDARPNKFTYPTLFKACSVAQA---- 147

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG-----------------C--VMYAGF 243
           ++ G++IH  V++HG    VHI +  I MYA FG                 C   M  G+
Sbjct: 148 VQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGY 207

Query: 244 V-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI------------ 280
           +           F+QM VKN+ SW+ MI   A+ G   +A +LF EM             
Sbjct: 208 LKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVD 267

Query: 281 -----------------MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG--L 321
                            M+  +  P    + SVL AC+ + A++QG+ +H Y+ R    L
Sbjct: 268 GYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKL 327

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           D++L   +AL+ MYA+CG+L++G  VF+ M +R++ +WN++I    +HG    A+++F +
Sbjct: 328 DAVLG--TALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSK 385

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           +    + P+ I+ V VL AC+HAG V++G  +F++MR+ + + P +EHY CMVDLLGR+ 
Sbjct: 386 LQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSG 445

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
              EA  +I  + ++P   VWG+LLG+CRIH N +LAER  K L ELEP N+G YVLL++
Sbjct: 446 LFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSN 505

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YA    +D+V ++++L++ RG++ VPG S +++   ++ F   D  HPQ ++++  L  
Sbjct: 506 IYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKI 565

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           +   ++  G+ P T  VL+D+D EEKE  V  HSEKLA+AFGLINT  G+ I I KNLR+
Sbjct: 566 IKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRV 625

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C+DCHS TK IS+  ++EI+VRD  R+HHF+NG CSC D+W
Sbjct: 626 CDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/603 (36%), Positives = 348/603 (57%), Gaps = 12/603 (1%)

Query: 64  NLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
           +L ++ D+    L+    P + TY  +L +CTH   +     +HS    NGF  D ++  
Sbjct: 325 DLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSG 384

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
            LI++YS +  +D A+ + D    + +  W ++          +E LE ++ M   G  I
Sbjct: 385 VLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACG--I 442

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
             D       + AC     G   +  G +IHA V   GY+  V I   L+ +YAR G   
Sbjct: 443 WPDNIGLASAISACA----GIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISK 498

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
            A   F  +  K  ++W+ +I+ +A++G+  EAL++F  M M+      N  T VS + A
Sbjct: 499 EAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVF--MKMDQAGAKYNVFTFVSSISA 556

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
            A LA ++QGK IH  +++ G  S   + +AL+++Y +CG +E  +  F  M KR+ VSW
Sbjct: 557 SANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSW 616

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           N++I+    HG G +A+ +F +M   G+ PS ++FV VL ACSH GLVEEG   F+SM  
Sbjct: 617 NTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSN 676

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
           EH I P  +HYAC+VD+LGRA +L+ A + +E++ I     VW +LL +C++H N+E+ E
Sbjct: 677 EHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGE 736

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKM 539
            A+K L ELEP ++ +YVLL++ YA    W    +++++++ RG++K PGRS IEVK  +
Sbjct: 737 FAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVV 796

Query: 540 YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA 599
           ++F   D  HP  +Q++  L +L+  + + GY  +   + ++ + E K+     HSEKLA
Sbjct: 797 HAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLA 856

Query: 600 VAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           VAFGL++      +R+ KNLR+C DCH++ KF S    +EI++RDV RFHHF NG CSCG
Sbjct: 857 VAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCG 916

Query: 660 DYW 662
           DYW
Sbjct: 917 DYW 919



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 211/424 (49%), Gaps = 14/424 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEP----NPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI    + G+  +AL +         +P   T   LL +C+    L     +HS+L  
Sbjct: 213 NTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLK 272

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   D  +   L+++Y     +++A  +FD   R  + +WN +  A        +  ++
Sbjct: 273 AGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDI 332

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + RM     G+R ++FTY  +L+ C  +      +  G++IH+  +++G+   +++   L
Sbjct: 333 FYRM--LAAGVRPNKFTYPCMLRTCTHT----GEIGLGEQIHSLTIKNGFQSDMYVSGVL 386

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY+++G +  A  +   +  K+VVSW++MIA Y ++    EALE F+E  M++  + P
Sbjct: 387 IDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKE--MQACGIWP 444

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +++ + S + ACA + A+ QG  IH  +   G  + + + + LV +YARCG  +     F
Sbjct: 445 DNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSF 504

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + ++ ++ ++WN LIS +   G   +A+++F +M   G   +  +FVS + A ++   ++
Sbjct: 505 EAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIK 564

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           +GK +   + K      + E    ++ L G+   +E+A     ++  +     W +++  
Sbjct: 565 QGKQIHARVIKTGYTSET-EISNALISLYGKCGSIEDAKMDFFEM-TKRNEVSWNTIITC 622

Query: 469 CRIH 472
           C  H
Sbjct: 623 CSQH 626



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 182/376 (48%), Gaps = 12/376 (3%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LI++Y+    V  AR VF++   R    W A+       G GEE + LYR M+      R
Sbjct: 83  LIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMH------R 136

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
           S      YVL + +++     L + G+ IH  V + G+     +   LI +Y R      
Sbjct: 137 SGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRL 196

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF  M   + V+++ +I+ +A+ G    AL +F EM +    L P+SVT+ S+L AC
Sbjct: 197 ADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSG--LSPDSVTIASLLAAC 254

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           +A+  L +GK +H Y+L+ G+     +  +L+ +Y + G +E    +FD  D+ +VV WN
Sbjct: 255 SAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWN 314

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
            ++ +YG      K+  IF  M+  GV P+  ++  +L  C+H G +  G+ +  S+  +
Sbjct: 315 LMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQI-HSLTIK 373

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH--CNVELA 478
           +  +  +     ++D+  +   L++A +I+ D+  E     W S++     H  C   L 
Sbjct: 374 NGFQSDMYVSGVLIDMYSKYGWLDKAQRIL-DMIEEKDVVSWTSMIAGYVQHEFCKEALE 432

Query: 479 ERASKRLFELEPTNAG 494
                +   + P N G
Sbjct: 433 TFKEMQACGIWPDNIG 448



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 145/266 (54%), Gaps = 6/266 (2%)

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
           +   L+AC  S   + L+    EIHA  +  G +G   I   LID+YA+ G V  A  VF
Sbjct: 44  FACALRACRGSGRRWPLVP---EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVF 100

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
            +++V++ VSW A+++ YA+NG+  EA+ L+RE  M    + P    + S+L AC     
Sbjct: 101 EELSVRDNVSWVAVLSGYAQNGLGEEAVRLYRE--MHRSGVVPTPYVLSSILSACTKTEL 158

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
            + G++IH  + ++G  S   V +AL+++Y RC    L   VF  M   D V++N+LIS 
Sbjct: 159 FQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISG 218

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           +   G+G +A+ IF EM   G+SP  ++  S+L ACS  G + +GK L   + K  M   
Sbjct: 219 HAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLD 278

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIE 451
            +     ++DL  ++  +EEA +I +
Sbjct: 279 YIME-GSLLDLYVKSGDIEEALQIFD 303



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 197/443 (44%), Gaps = 16/443 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PT +    +L +CT          +H  +   GF  + F+   LI++Y    S   A  V
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRV 200

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F          +N L       G G+  L ++  M    +G+  D  T   +L AC A  
Sbjct: 201 FCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQ--LSGLSPDSVTIASLLAACSA-- 256

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L+ GK++H+ +L+ G +    +  +L+D+Y + G +  A  +F      NVV W+
Sbjct: 257 --VGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWN 314

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            M+  Y +     ++ ++F  M+  +  + PN  T   +L+ C     +  G+ IH   +
Sbjct: 315 LMLVAYGQIDDLAKSFDIFYRML--AAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTI 372

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G  S + V   L+ MY++ G L+  Q + D ++++DVVSW S+I+ Y  H +  +A++
Sbjct: 373 KNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALE 432

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
            FKEM   G+ P  I   S + AC+    V +G  +   +         V  +  +V L 
Sbjct: 433 TFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGY-SADVSIWNGLVYLY 491

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA--GN 495
            R    +EA    E +  + G   W  L+          L E A K   +++   A    
Sbjct: 492 ARCGISKEAFSSFEAIEHKEGI-TWNGLISG---FAQSGLYEEALKVFMKMDQAGAKYNV 547

Query: 496 YVLLADVYAAADMWDEVKRVKRL 518
           +  ++ + A+A++ D +K+ K++
Sbjct: 548 FTFVSSISASANLAD-IKQGKQI 569



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 287 CPNSVTMVSVLQACAALAALEQGKM------IHGYILRRGLDSILPVVSALVTMYARCGK 340
           C   + + +V  ACA  A    G+       IH   +  GL     + + L+ +YA+ G 
Sbjct: 33  CRQYMVLGAVDFACALRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGF 92

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +   + VF+ +  RD VSW +++S Y  +G G +A+++++EM   GV P+P    S+L A
Sbjct: 93  VRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSA 152

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           C+   L + G+++   + K+     +    A ++ L  R      A ++  D+
Sbjct: 153 CTKTELFQLGRLIHVQVYKQGFFSETFVGNA-LISLYLRCRSFRLADRVFCDM 204


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/584 (37%), Positives = 351/584 (60%), Gaps = 8/584 (1%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
            +TY  +L +C    ++      H  +  NGF  D F++  LI  Y +  S   A  VFD
Sbjct: 111 NYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFD 170

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           ++  R +  WN +  A    G  E+  +L   M      +R D  T   ++ AC      
Sbjct: 171 ESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDN-LRPDEVTMVSLVPACAQ---- 225

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
              L+ GK +H+     G +  + +   ++DMY +   +  A  VF+++  K+V+SW++M
Sbjct: 226 LGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSM 285

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           ++  A++G   EAL LF++M +   +L  + +T+V VL ACA   AL+QGK IH  I + 
Sbjct: 286 LSGLAKSGYFQEALALFQKMQLNKIEL--DEITLVGVLSACAQTGALDQGKYIHLLIDKF 343

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
            ++  L + +ALV MYA+CG ++L   VF  M  R+V +WN+LI    +HG+G  AI +F
Sbjct: 344 EINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLF 403

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
            +M +  + P  ++F+++L ACSHAGLV+EG  +F++M+ +  I P +EHY C+VDLL R
Sbjct: 404 DQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCR 463

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           A K+++A   IE++ I+    +W +LLG+CR   + +LAE+  +R+ ELEP + G YV+L
Sbjct: 464 ARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVML 523

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           +++YA    WD   ++++ ++ +G++K PG S IE+   ++ FV+ D  H Q EQ++A++
Sbjct: 524 SNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMI 583

Query: 560 INLSAEMK-EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKN 618
             ++  +  + G+VP T  VL+D++ EEKE  +  HSEKLA+A GLI+T  G  IRI KN
Sbjct: 584 EEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKN 643

Query: 619 LRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           LR+C DCHSF K  SK  N+EI+ RD +RFHHF+ G CSC D+W
Sbjct: 644 LRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 196/384 (51%), Gaps = 11/384 (2%)

Query: 91  THHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDKTRRRTIYV 148
           TH  S+S     H+ L       +P   +KLI+    SH   ++ AR +F + +    ++
Sbjct: 19  THCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFI 78

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
            N + R    +    E + LY  M     G+  D +TY +VL AC         +K G+ 
Sbjct: 79  CNTMIRGYARSQNPYEAVSLYYFM--VERGVPVDNYTYPFVLAACAR----LGAVKLGRR 132

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
            H  VL++G+   + ++  LI  Y   G    A  VF +  V++VV+W+ MI  +   G+
Sbjct: 133 FHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGL 192

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
           + +A +L  EM  +  +L P+ VTMVS++ ACA L  LE+GK +H Y    GLD  L V 
Sbjct: 193 SEKAFDLLDEMT-KLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVN 251

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           +A++ MY +C  +E  Q VF+ + ++DV+SW S++S     GY  +A+ +F++M  + + 
Sbjct: 252 NAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIE 311

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
              I+ V VL AC+  G +++GK +   + K  +    V   A +VD+  +   ++ A +
Sbjct: 312 LDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETA-LVDMYAKCGSIDLALQ 370

Query: 449 IIEDLRIEPGPKVWGSLLGSCRIH 472
           +   +R+      W +L+G   +H
Sbjct: 371 VFRRMRVR-NVFTWNALIGGLAMH 393



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 169/358 (47%), Gaps = 18/358 (5%)

Query: 33  CCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS-----IEPNPTQHTYELLL 87
           C C   + ST    ++    N +I +   +G   +A D+L          P + T   L+
Sbjct: 164 CACDVFDESTVRDVVTW---NIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLV 220

Query: 88  LSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIY 147
            +C    +L     +HS+  + G D++  +   ++++Y   D ++ A+ VF++ R + + 
Sbjct: 221 PACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVL 280

Query: 148 VWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGK 207
            W ++   L  +G  +E L L+++M      I  D  T   VL AC  +      L  GK
Sbjct: 281 SWTSMLSGLAKSGYFQEALALFQKMQ--LNKIELDEITLVGVLSACAQTGA----LDQGK 334

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
            IH  + +   N  + + T L+DMYA+ G +  A  VF +M V+NV +W+A+I   A +G
Sbjct: 335 YIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHG 394

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILP 326
              +A+ LF +  ME   L P+ VT +++L AC+    +++G  M      +  ++  + 
Sbjct: 395 HGEDAISLFDQ--MEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRME 452

Query: 327 VVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
               +V +  R  K++      ++M  K + V W +L+ +    G+   A +I + +I
Sbjct: 453 HYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVI 510


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/627 (38%), Positives = 353/627 (56%), Gaps = 25/627 (3%)

Query: 43  TPTSLSSRNKNE------LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHH-NS 95
            PT L+S   +        + +  ++G+L  A +  +  P  T  TY  LL         
Sbjct: 54  APTPLASARSHTCSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGR 113

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRA 155
           L+DA     HL D     D      L++ +      D AR +F     R +  WN +   
Sbjct: 114 LADA----RHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSG 169

Query: 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
           L+ +G  EE   ++  M      +R+     +    A V+   GF+  +           
Sbjct: 170 LSKSGAVEEAKAVFLAMP-----VRN-----SVSWNAMVS---GFACSRDMSAAEEWFRN 216

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
               G   + T ++  Y   G V+ A   F  M V+N+VSW+A++A Y +N  A +AL L
Sbjct: 217 APEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRL 276

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           FR M+ E+ ++ PN+ T+ SVL  C+ L+AL  GK IH + ++  L   L V ++LV+MY
Sbjct: 277 FRTMVREA-NVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMY 335

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
            +CG L     +F  M  RDVV+WN++IS Y  HG G +AI +F+ M   GV P+ I+FV
Sbjct: 336 CKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFV 395

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
           +VL AC H GL + G   FE M++ + I P V+HY+CMVDLL RA KLE A  +I  +  
Sbjct: 396 AVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPF 455

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
           EP P  +G+LL +CR++ N+E AE A+ +L E +P +AG YV LA++YA A+ WD+V RV
Sbjct: 456 EPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRV 515

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT 575
           +R ++   + K PG S IE+K  M+ F S D  HPQ   +H  L  L+  MK  GYVP  
Sbjct: 516 RRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDL 575

Query: 576 KVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKF 635
             VL+D+D   K ++++ HSEKLA++FGLI+T+ G T+RI KNLR+C DCH+  K ISK 
Sbjct: 576 DFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKI 635

Query: 636 ANKEILVRDVNRFHHFRNGVCSCGDYW 662
            ++EI++RD  RFHHFR G CSCGDYW
Sbjct: 636 EDREIILRDTTRFHHFRGGHCSCGDYW 662


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/585 (38%), Positives = 347/585 (59%), Gaps = 42/585 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +TY  +L +C+   +L   L +H  +   G D + F+   LI +Y     + +AR V
Sbjct: 117 PDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRV 176

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+   + +  WN++        R ++ LE+ R M   G   + D  T   ++ A   +S
Sbjct: 177 FDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQ--KPDGCTMASLMPAVANTS 234

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                                                   V+Y   +F  +  KN++SW+
Sbjct: 235 SEN-------------------------------------VLYVEKIFVNLERKNLISWN 257

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            MI  Y +N +  +A++L+ +M  E   + P+++T  SVL AC  L+AL  G+ IH Y+ 
Sbjct: 258 VMIRVYMKNSLPTQAVDLYLQM--EKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVE 315

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           ++ L   L + ++L+ MYARCG L+  + VFD M  RDV SW SLIS+YG+ G G  A+ 
Sbjct: 316 KKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVA 375

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F EM+  G +P  I+FV++L ACSH+GL++EG++ F+ M  ++ I P +EHYAC+VDLL
Sbjct: 376 LFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLL 435

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA +++EA  II+ + IEP  +VW +LL SCR+  N+++   A+  L +L P  +G YV
Sbjct: 436 GRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYV 495

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++YA A  W EV  ++ +++ + ++K PG S +E+  ++++F++ D  HPQ ++++ 
Sbjct: 496 LLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYE 555

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  L A+MKE GYVP+T   L+D++ E+KE  +  HSEKLA+ F L+NT + + IRITK
Sbjct: 556 ELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQEYQ-IRITK 614

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH   K ISK   +EI+VRD NRFHHF++GVCSCGDYW
Sbjct: 615 NLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 143/287 (49%), Gaps = 31/287 (10%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF +M+ +NVV ++ MI  Y  N    + L +FREM+  +    P++ T   VL+AC+  
Sbjct: 75  VFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMV--NGGFRPDNYTYPCVLKACSCS 132

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
             L  G +IHG +L+ GLD  L V + L+ MY +CG L   + VFD M  +DVVSWNS++
Sbjct: 133 ENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMV 192

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL--VEEGKMLFESMRKEH 421
           + Y  +     A++I +EM  +G  P   +  S++ A ++     V   + +F ++ +++
Sbjct: 193 AGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKN 252

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKI---IEDLRIEPGPKVWGSLLGSC--------- 469
           +I  +V     M+ +  + +   +A  +   +E  R+EP    + S+L +C         
Sbjct: 253 LISWNV-----MIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLG 307

Query: 470 -RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
            RIH  VE  +     L E           L D+YA     D+ KRV
Sbjct: 308 RRIHEYVEKKKLCPNLLLENS---------LIDMYARCGCLDDAKRV 345


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/633 (39%), Positives = 359/633 (56%), Gaps = 24/633 (3%)

Query: 32  VCCCVSLNSSTTPT-SLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSC 90
           +C C  L S+ + T SLS+      + +  ++G+L  A +  +  P  T  TY  LL   
Sbjct: 3   LCRCPFLASARSHTCSLST----VAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGY 58

Query: 91  THH-NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVW 149
                 L+DA     HL D     D      L++ +      D AR +F     R +  W
Sbjct: 59  ARALGRLADA----RHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSW 114

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
           N +   L+ +G  EE   ++  M      +R+     +    A V+   GF+  +     
Sbjct: 115 NTMVSGLSKSGAVEEAKAVFLAMP-----VRN-----SVSWNAMVS---GFACSRDMSAA 161

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
                     G   + T ++  Y   G V+ A   F  M V+N+VSW+A++A Y +N  A
Sbjct: 162 EEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHA 221

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            +AL LFR M+ E+ ++ PN+ T+ SVL  C+ L+AL  GK IH + ++  L   L V +
Sbjct: 222 DDALRLFRTMVREA-NVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGT 280

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           +LV+MY +CG L     +F  M  RDVV+WN++IS Y  HG G +AI +F+ M   GV P
Sbjct: 281 SLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEP 340

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
           + I+FV+VL AC H GL + G   FE M++ + I P V+HY+CMVDLL RA KLE A  +
Sbjct: 341 NWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDL 400

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
           I  +  EP P  +G+LL +CR++ N+E AE A+ +L E +P +AG YV LA++YA A+ W
Sbjct: 401 IRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQW 460

Query: 510 DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569
           D+V RV+R ++   + K PG S IE+K  M+ F S D  HPQ   +H  L  L+  MK  
Sbjct: 461 DDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAM 520

Query: 570 GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
           GYVP    VL+D+D   K ++++ HSEKLA++FGLI+T+ G T+RI KNLR+C DCH+  
Sbjct: 521 GYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAA 580

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K ISK  ++EI++RD  RFHHFR G CSCGDYW
Sbjct: 581 KVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/606 (38%), Positives = 342/606 (56%), Gaps = 48/606 (7%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            VH     +G   D F+   ++++Y+    +++A  VF + + + +  WNA+    + AG
Sbjct: 385 QVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAG 444

Query: 161 RGEEVLELYRRMN---------------------GTGT------------GIRSDRFTYT 187
           R E  L L+ RM                      G G             G R +  T  
Sbjct: 445 RLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLV 504

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYN--------GIVHIMTTLIDMYARFGCVM 239
            +L ACV+       L HGKE H   ++   N          + ++  LIDMYA+     
Sbjct: 505 SLLSACVS----VGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTE 560

Query: 240 YAGFVFSQMAVKN--VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
            A  +F  ++ K+  VV+W+ MI  YA++G A  AL+LF  M      + PN  T+   L
Sbjct: 561 VARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCAL 620

Query: 298 QACAALAALEQGKMIHGYILRRGLDSI-LPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
            ACA LAAL  G+ +H Y+LR    S+ L V + L+ MY++ G ++  Q VFD+M +R+ 
Sbjct: 621 VACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNA 680

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           VSW SL++ YG+HG G  A+++F EM    + P  I+F+ VL ACSH+G+V+ G   F  
Sbjct: 681 VSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNR 740

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE 476
           M K+  + P  EHYACMVDL GRA +L EA K+I ++ +EP P VW +LL +CR+H NVE
Sbjct: 741 MSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVE 800

Query: 477 LAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVK 536
           L E A+ RL ELE  N G+Y LL+++YA A  W +V R++  ++  G++K PG S I+ +
Sbjct: 801 LGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGR 860

Query: 537 RKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSE 596
           + + +F   D  HPQ +Q++  L +L   +K  GYVPQT   L+D+D EEK  ++  HSE
Sbjct: 861 KGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSE 920

Query: 597 KLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVC 656
           KLA+A+G++       IRITKNLR+C DCHS   +ISK    EI++RD +RFHHF+NG C
Sbjct: 921 KLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSC 980

Query: 657 SCGDYW 662
           SC  YW
Sbjct: 981 SCKGYW 986



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 129/509 (25%), Positives = 222/509 (43%), Gaps = 77/509 (15%)

Query: 25  LPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVL----SIEPNPTQ 80
           LPP PSSV                    N+LI+     G+ R    +     S+   P  
Sbjct: 217 LPPSPSSVFWW-----------------NQLIRRALHLGSPRDVFTLYRQMKSLGWTPDH 259

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           +T+  +  +C + +SLS   ++H+ ++ +GF  + F+   ++++Y    ++  A ++FD 
Sbjct: 260 YTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDD 319

Query: 141 TRRRTI---YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
              R I     WN++  A   A      L L+ +M  T   +  D  +   +L AC + +
Sbjct: 320 LCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMT-TRHLMSPDVISLVNILPACASLA 378

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                   G+++H   +R G    V +   ++DMYA+ G +  A  VF +M  K+VVSW+
Sbjct: 379 ASL----RGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWN 434

Query: 258 AMIACYARNGMAFEALELFREMIMESHDL------------------C------------ 287
           AM+  Y++ G    AL LF  M  E+ +L                  C            
Sbjct: 435 AMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDC 494

Query: 288 ---PNSVTMVSVLQACAALAALEQGKMIHGYILR---------RGLDSILPVVSALVTMY 335
              PN VT+VS+L AC ++ AL  GK  H Y ++          G D  L V++ L+ MY
Sbjct: 495 GSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADD-LKVINGLIDMY 553

Query: 336 ARCGKLELGQCVFDHMD--KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY--HGVSPSP 391
           A+C   E+ + +FD +    RDVV+W  +I  Y  HG    A+Q+F  M      + P+ 
Sbjct: 554 AKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPND 613

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
            +    L AC+    +  G+ +   + +       +    C++D+  ++  + + A+I+ 
Sbjct: 614 FTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDV-DTAQIVF 672

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           D   +     W SL+    +H   E A R
Sbjct: 673 DNMPQRNAVSWTSLMTGYGMHGRGEDALR 701



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 165/335 (49%), Gaps = 47/335 (14%)

Query: 117 LVTKLINVYSHFDSVDDARHVFDK--TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
           L T LI  Y   +S   A  + ++      +++ WN L R     G   +V  LYR+M  
Sbjct: 193 LATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKS 252

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
            G     D +T+ +V KAC       S L  G  +HA+V R G+   V +   ++ MY +
Sbjct: 253 LGW--TPDHYTFPFVFKACA----NLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGK 306

Query: 235 FGCVMYAGFVFSQM---AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
            G + +A  +F  +    ++++VSW+++++ Y     A  AL LF +M    H + P+ +
Sbjct: 307 CGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTR-HLMSPDVI 365

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           ++V++L ACA+LAA  +G+ +HG+ +R GL   + V +A+V MYA+CGK+E    VF  M
Sbjct: 366 SLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRM 425

Query: 352 DKRDVVSWNSL-----------------------------------ISSYGVHGYGGKAI 376
             +DVVSWN++                                   I+ Y   G G +A+
Sbjct: 426 KFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEAL 485

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
            +F++M   G  P+ ++ VS+L AC   G +  GK
Sbjct: 486 DVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGK 520



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 111/291 (38%), Gaps = 62/291 (21%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVLS--------IEPNPTQHTYELLLLSCTH 92
           S +P          +I    + G+   AL + S        I+PN    T    L++C  
Sbjct: 568 SVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPN--DFTLSCALVACAR 625

Query: 93  HNSLSDALNVHSHLTDNGFDQDPFLVTK-LINVYSHFDSVDDARHVFDKTRRRTIYVWNA 151
             +L     VH+++  N +      V   LI++YS    VD A+ VFD   +R    W +
Sbjct: 626 LAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTS 685

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           L     + GRGE+ L ++  M      +  D  T+  VL AC                H+
Sbjct: 686 LMTGYGMHGRGEDALRVFDEMR--KVPLVPDGITFLVVLYACS---------------HS 728

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS-----WSAMIACYARN 266
            ++ HG N                         F++M+    V      ++ M+  + R 
Sbjct: 729 GMVDHGIN------------------------FFNRMSKDFGVDPGPEHYACMVDLWGRA 764

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           G   EA++L  EM ME     P  V  V++L AC   + +E G+     +L
Sbjct: 765 GRLGEAMKLINEMPME-----PTPVVWVALLSACRLHSNVELGEFAANRLL 810


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/586 (36%), Positives = 348/586 (59%), Gaps = 7/586 (1%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P   T   +L +    N+L     +H++   N F  +  L T L+++Y+    +  AR 
Sbjct: 207 TPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARK 266

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +F+   ++    W+A+     L     + L LY  M     G+     T   +L+AC   
Sbjct: 267 IFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCI-YGLNPTPATLATMLRACAQ- 324

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
               + LK GK++H  +++ G +    +  +LI MYA+ G +  A     +M  K+ VS+
Sbjct: 325 ---LTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSY 381

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           SA+I+   +NG A +AL +FR+M  +S  + P   TM+++L AC+ LAAL+ G   HGY 
Sbjct: 382 SAIISGCVQNGYAEKALLIFRQM--QSSGIAPYLETMIALLPACSHLAALQHGTCCHGYT 439

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           + RG  +   + +A++ MY++CGK+ + + +FD M  RD++SWN++I  YG+HG   +A+
Sbjct: 440 VVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEAL 499

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F+E+   G+ P  ++ ++VL ACSH+GLV EGK  F SM +   I+P + HY CMVDL
Sbjct: 500 SLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDL 559

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           L RA  L+EA   I+ +   P  ++WG+LL +CR H N+E+ E+ SK++  L P   GN+
Sbjct: 560 LARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNF 619

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VL++++Y++   WD+   ++ +    G +K PG S +E+   ++ F+   + HPQ   ++
Sbjct: 620 VLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASIN 679

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  L  +MK+ GY   +  VL+D++ EEKE+I+L HSEK+A+AFG++NTS    I +T
Sbjct: 680 KKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVT 739

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCHS  KFI+    +EI VRD +RFHHF++G+C+C D+W
Sbjct: 740 KNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 190/364 (52%), Gaps = 13/364 (3%)

Query: 53  NELIQSLCKQGNLRQA----LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I++    G  +Q+    L +L +   PT  T+  LL +C+   +L     +H+H   
Sbjct: 76  NMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHI 135

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT--RRRTIYVWNALFRALTLAGRGEEVL 166
            G   D ++ T L+++Y+    +  A+ +F+    + R I  WNA+  A +      + +
Sbjct: 136 LGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTI 195

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
               +M   G    S        L + + +    + L  GK IHA  +R+ +   V + T
Sbjct: 196 HSVAQMQQAGVTPNSS------TLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQT 249

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+DMYA+   + YA  +F+ +  KN V WSAMI  Y  +    +AL L+ +M+   + L
Sbjct: 250 ALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLC-IYGL 308

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P   T+ ++L+ACA L  L++GK +H ++++ G+D    V ++L++MYA+CG ++    
Sbjct: 309 NPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVG 368

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
             D M  +D VS++++IS    +GY  KA+ IF++M   G++P   + +++L ACSH   
Sbjct: 369 FLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAA 428

Query: 407 VEEG 410
           ++ G
Sbjct: 429 LQHG 432



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 166/307 (54%), Gaps = 11/307 (3%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           T+L   +   + +  ARHVFD+  + ++ +WN + R    +G  ++ + LY  M     G
Sbjct: 45  TQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHM--LQLG 102

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           +    FT+ ++LKAC +       L+ G+ IH      G +  +++ T L+ MYA+ G +
Sbjct: 103 VTPTNFTFPFLLKACSS----LQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHL 158

Query: 239 MYAGFVFSQMA--VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
             A  +F+ ++   +++V+W+AMIA ++ + +  + +    +M  +   + PNS T+VS+
Sbjct: 159 YQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQM--QQAGVTPNSSTLVSI 216

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           L       AL QGK IH Y +R      + + +AL+ MYA+C  L   + +F+ ++K++ 
Sbjct: 217 LPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKND 276

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           V W+++I  Y +H     A+ ++ +M+  +G++P+P +  ++L AC+    ++ GK L  
Sbjct: 277 VCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHC 336

Query: 416 SMRKEHM 422
            M K  M
Sbjct: 337 HMIKSGM 343


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/438 (45%), Positives = 298/438 (68%), Gaps = 2/438 (0%)

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
           +T +I  YA++G +  A  +F  +  ++ + W+ MI  YA++G+  E L LFR+M+  + 
Sbjct: 9   LTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQML--NA 66

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
            + PN VT+++VL AC    ALE G+ +H YI   G+   + V ++L+ MY++CG LE  
Sbjct: 67  KVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDA 126

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           + VF+ +  +DVV+WNS++  Y +HG+   A+++FKEM   G  P+ I+F+ VL ACSHA
Sbjct: 127 RLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHA 186

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           GLV EG   F SM+ E+ I P VEHY CMV+LLGRA  LEEA ++++++ I+  P +WG+
Sbjct: 187 GLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGT 246

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LLG+CR+H N+ L E+ ++ L      N+G YVLL+++YAAA  W+ V RV+ L++  G 
Sbjct: 247 LLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGF 306

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +K PG S IEV  K++ F++ D  HP+  +++ +L  ++  +K  GY PQT +VL+DL+ 
Sbjct: 307 EKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLED 366

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
            +KER +  HSEKLA+AFGLI T  G TI+I KNLR+C DCH+ TK ISK   +++++RD
Sbjct: 367 AQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRD 426

Query: 645 VNRFHHFRNGVCSCGDYW 662
            NRFHHF NG+CSCGDYW
Sbjct: 427 RNRFHHFVNGLCSCGDYW 444



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 138/275 (50%), Gaps = 10/275 (3%)

Query: 118 VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177
           +T +I  Y+ +  +D+AR +FD    R    WN +       G   E L L+R+M     
Sbjct: 9   LTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQM--LNA 66

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
            +R +  T   VL AC  +      L+ G+ +H+ +  +G    V + T+LIDMY++ G 
Sbjct: 67  KVRPNEVTVLAVLSACGQTGA----LETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGS 122

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           +  A  VF +++ K+VV+W++M+  YA +G + +AL LF+EM M  +   P  +T + VL
Sbjct: 123 LEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQ--PTDITFIGVL 180

Query: 298 QACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRD 355
            AC+    + +G K  +      G++  +     +V +  R G LE    +  +M+  +D
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
            V W +L+ +  +HG      QI + ++   ++ S
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANS 275



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 46/294 (15%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G   + L     +L+ +  P + T   +L +C    +L     VHS++ +
Sbjct: 41  NVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIEN 100

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           NG   +  + T LI++YS   S++DAR VF++   + +  WN++     + G  ++ L L
Sbjct: 101 NGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRL 160

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           ++ M     G +    T+  VL AC                HA ++  G+        ++
Sbjct: 161 FKEM--CMIGYQPTDITFIGVLNACS---------------HAGLVSEGWK----FFYSM 199

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
            D Y                    V  +  M+    R G   EA EL + M ++      
Sbjct: 200 KDEYG---------------IEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQ----- 239

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
           + V   ++L AC     +  G+ I  Y++ + L +    V  L  +YA  G  E
Sbjct: 240 DPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYV-LLSNIYAAAGNWE 292


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/561 (40%), Positives = 350/561 (62%), Gaps = 7/561 (1%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH+H+  +G+    FL+TKL+N+     S+   R +F        +++ +L R+ T    
Sbjct: 31  VHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRS-TSKFH 89

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
              V  LY       + +    +T+T V+K+C         L+HG+ IH  VL +G+   
Sbjct: 90  NFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCA----DLVALRHGRIIHGHVLVNGFGSD 145

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V++ T L+  Y + G +  A  VF +M  ++VV+W++MI+ Y +NG A EA+ LF  M  
Sbjct: 146 VYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRM-- 203

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           +   + PNS T VSVL ACA L A   G  +H Y +  GLD  + + ++L+ MY RCG +
Sbjct: 204 KEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNV 263

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
              + VFD M +R+VV+W ++IS YG +GYG +A+++F EM  +G+ P+ I+FV+VL AC
Sbjct: 264 SKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSAC 323

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           +HAGLV EG+ +FESMR+E+ + P VEH+ C+VD+LGRA  L+EA   I+++  EP P +
Sbjct: 324 AHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAI 383

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W ++LG+C++H N  L  + ++     EP N  +YV+L+++YA A   D+V+ V+  +  
Sbjct: 384 WTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIR 443

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           + L+K  G S I++ RK Y F   D+ H +  +++  L  L  + +E GYV  +  V+++
Sbjct: 444 KCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMHE 503

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           L+ EE+E  +  HSEKLA+AFGL+ TS+G  IRI KNLR+CEDCHS  K+IS  +N+EI+
Sbjct: 504 LEEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVISNREII 563

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           VRD  RFHHF+NG CSC DYW
Sbjct: 564 VRDKLRFHHFKNGSCSCLDYW 584


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/588 (39%), Positives = 352/588 (59%), Gaps = 20/588 (3%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS----VDDARHVFDKT 141
           LL    H  SL     +H+     G    P LVT+L+ + +   +    +  AR VFD+ 
Sbjct: 28  LLSHLPHCTSLRGLAQLHAAAVKAGLAAHPALVTRLLTLCTGPGAGPAHLAYARQVFDRV 87

Query: 142 RRRTIYVW-NALFRALT-----LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            + +  VW N L R         +      + ++ RM     G+  D +T+  +LKAC A
Sbjct: 88  TQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRM--LEEGVAPDTYTFVSLLKACAA 145

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           +  G    +HG++ HA  ++ G  G  ++  TLI+MYA  G    A   F +     VVS
Sbjct: 146 ARAG----EHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCVVS 201

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           ++AMIA   R+    EAL LFREM  ++  L P  VT++SVL ACA L AL+ G+ +H Y
Sbjct: 202 YNAMIAAAVRSSRPGEALVLFREM--QAKGLNPTPVTVISVLSACALLGALQLGRWLHDY 259

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           + + GL S++ V +ALV MYA+CG LE    VF  M+ RD  +W+ +I +Y  HGYG +A
Sbjct: 260 VRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGREA 319

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           I +F+EM   G+ P  I+F+ +L ACSH+GLV EG   F+ M K+H I P ++HY C+ D
Sbjct: 320 ISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDM-KDHGIVPGIKHYGCVTD 378

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495
           LL R+ +LE A K I++L I P P +W +LL +C  H +VEL +R  +R+ EL+ ++ G+
Sbjct: 379 LLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRVFERILELDDSHGGD 438

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           YV+ +++ A    W+E+ RV++L+  +G+ KVPG S IE+   ++ F + D  HP+ ++ 
Sbjct: 439 YVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEA 498

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG-HSEKLAVAFGLINTSKGETIR 614
             ++  +  ++K  GY+P T  V +    EE++ I L  HSEKLA+AFGL+NT+ G T+R
Sbjct: 499 RKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATLR 558

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + KNLR+C DCHS  KF+S   N+ I++RD+NRFHHF  G+CSCGDYW
Sbjct: 559 VVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGICSCGDYW 606



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 168/388 (43%), Gaps = 25/388 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL +C    +       H+     G     ++   LIN+Y+       AR  
Sbjct: 131 PDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVT 190

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F +     +  +NA+  A   + R  E L L+R M     G+     T   VL AC    
Sbjct: 191 FGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQ--AKGLNPTPVTVISVLSACAL-- 246

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L+ G+ +H  V + G   +V + T L+DMYA+ G +  A  VF  M  ++  +WS
Sbjct: 247 --LGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWS 304

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            MI  YA +G   EA+ LF E  M+   + P+ +T + +L AC+    + +G      + 
Sbjct: 305 VMIVAYANHGYGREAISLFEE--MKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDMK 362

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV-VSWNSLISSYGVHGYGGKAI 376
             G+   +     +  + AR G+LE      D +      + W +L+S+ G HG      
Sbjct: 363 DHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELGK 422

Query: 377 QIFKEMI----YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR----PSVE 428
           ++F+ ++     HG       +V     C++ G  EE   + + M  + +++     S+E
Sbjct: 423 RVFERILELDDSHGG-----DYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIE 477

Query: 429 HYACMVDLL---GRANKLEEAAKIIEDL 453
               + +     GR  K +EA K+++++
Sbjct: 478 IDNTVHEFFAGDGRHPKSQEARKMVDEV 505



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 98/253 (38%), Gaps = 18/253 (7%)

Query: 34  CCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHH 93
           C VS N+       SSR    L+        L + +    + P P   T   +L +C   
Sbjct: 198 CVVSYNAMIAAAVRSSRPGEALV--------LFREMQAKGLNPTPV--TVISVLSACALL 247

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
            +L     +H ++   G      + T L+++Y+   S++DA  VF     R    W+ + 
Sbjct: 248 GALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMI 307

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
            A    G G E + L+  M     G++ D  T+  +L AC  S     L+  G      +
Sbjct: 308 VAYANHGYGREAISLFEEMK--KQGMKPDDITFLGLLYACSHS----GLVSEGLRYFDDM 361

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV-VSWSAMIACYARNGMAFEA 272
             HG    +     + D+ AR G +  A     ++ +    + W  +++    +G     
Sbjct: 362 KDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELG 421

Query: 273 LELFREMIMESHD 285
             +F E I+E  D
Sbjct: 422 KRVF-ERILELDD 433


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/665 (35%), Positives = 369/665 (55%), Gaps = 57/665 (8%)

Query: 53  NELIQSLCKQGNLRQALDVLS-----IEPNPTQHTYELL-----LLSCTHHNSLSDALNV 102
           N ++ +  K  N   ALD+ S     +   PT    +++     L +C    ++     V
Sbjct: 190 NSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEV 249

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
           H +   NG   D F+   LI+ Y+    +++A  VF+    + +  WNA+    + +G  
Sbjct: 250 HGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNF 309

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVL-----KAC------------------------ 193
           +   EL++ M      I  D  T+T V+     + C                        
Sbjct: 310 KAAFELFKNMRKEN--IPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTII 367

Query: 194 -VASSCG-FSLLKHGKEIHASVLRH----------GYNGIVHIMTTLIDMYARFGCVMYA 241
            V S+C        G EIHA  L++          G +  + +   LIDMY++      A
Sbjct: 368 SVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 427

Query: 242 GFVFSQMAV--KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
             +F  + +  +NVV+W+ MI  +A+ G + +AL+LF EMI E + + PN+ T+  +L A
Sbjct: 428 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 487

Query: 300 CAALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           CA LAA+  GK IH Y+LR      S   V + L+ MY++CG ++  + VFD M ++  +
Sbjct: 488 CAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAI 547

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           SW S+++ YG+HG G +A+ IF +M   G  P  I+F+ VL ACSH G+V++G   F+SM
Sbjct: 548 SWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSM 607

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
             ++ + P  EHYA  +DLL R  +L++A K ++D+ +EP   VW +LL +CR+H NVEL
Sbjct: 608 SADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVEL 667

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
           AE A  +L E+   N G+Y L++++YA A  W +V R++ L++  G++K PG S ++ ++
Sbjct: 668 AEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQK 727

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
              SF   D  HP   Q++ALL +L   +K  GYVP+T   L+D+D EEK  +++ HSEK
Sbjct: 728 GTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEK 787

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+A+GL+ T  G  IRITKNLR+C DCHS   +ISK  + EI+VRD +RFHHF+NG CS
Sbjct: 788 LALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCS 847

Query: 658 CGDYW 662
           CG YW
Sbjct: 848 CGGYW 852



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/481 (27%), Positives = 223/481 (46%), Gaps = 68/481 (14%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI+   KQG L  A++V    L         T   +L +C    S       H  +  
Sbjct: 86  NLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICC 145

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI---YVWNALFRALTLAGRGEEV 165
           NGF+ + F+   L+ +YS   S+++A  +FD+  +R I     WN++  A   +      
Sbjct: 146 NGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTA 205

Query: 166 LELYRRM----NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
           L+L+ +M    +   T  RSD  +   +L AC +       +   KE+H + +R+G    
Sbjct: 206 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGS----LKAVPQTKEVHGNAIRNGTFLD 261

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG---MAF-------- 270
           V +   LID YA+ G +  A  VF+ M  K+VVSW+AM+A Y+++G    AF        
Sbjct: 262 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 321

Query: 271 ------------------------EALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
                                   EAL +FR+MI       PN VT++SVL ACA+L A 
Sbjct: 322 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGS--LPNCVTIISVLSACASLGAF 379

Query: 307 EQGKMIHGYILRR----------GLDSILPVVSALVTMYARCGKLELGQCVFDH--MDKR 354
            QG  IH Y L+           G D  L V +AL+ MY++C   +  + +FD   +++R
Sbjct: 380 SQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEER 439

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIY--HGVSPSPISFVSVLGACSHAGLVEEGKM 412
           +VV+W  +I  +  +G    A+++F EMI   +GV+P+  +   +L AC+H   +  GK 
Sbjct: 440 NVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ 499

Query: 413 LFESMRKEHMIRPSVEHYA-CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
           +   + + H    S    A C++++  +   ++ A  + + +  +     W S++    +
Sbjct: 500 IHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGM 558

Query: 472 H 472
           H
Sbjct: 559 H 559



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 189/412 (45%), Gaps = 63/412 (15%)

Query: 113 QDPF-----LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            +PF     L T ++  Y    + D A  V ++        WN L R     GR +  + 
Sbjct: 44  SEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAIN 103

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           +  RM   GT  R D FT  +VLKAC          + G   H  +  +G+   V I   
Sbjct: 104 VSCRMLRAGT--RLDHFTLPHVLKACGE----LPSYRCGSAFHGLICCNGFESNVFICNA 157

Query: 228 LIDMYARFGCVMYAGFVF---SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
           L+ MY+R G +  A  +F   +Q  + +V+SW+++++ + ++  A+ AL+LF +M +  H
Sbjct: 158 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 217

Query: 285 DLCPNS----VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           +   N     +++V++L AC +L A+ Q K +HG  +R G    + V +AL+  YA+CG 
Sbjct: 218 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGL 277

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYG------------------------------VHG 370
           +E    VF+ M+ +DVVSWN++++ Y                               + G
Sbjct: 278 MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAG 337

Query: 371 YGGK-----AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           Y  +     A+ +F++MI+ G  P+ ++ +SVL AC+  G   +G  +     K  ++  
Sbjct: 338 YSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTL 397

Query: 426 SVEH---------YACMVDLLGRANKLEEAAKIIEDLRIEPGPKV-WGSLLG 467
             +          Y  ++D+  +    + A  I +D+ +E    V W  ++G
Sbjct: 398 DNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 449


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/643 (35%), Positives = 357/643 (55%), Gaps = 21/643 (3%)

Query: 32  VCCCVSLNSSTTPTSLSSRNK-------NELIQSLCKQGNLRQALDVLSIEPN----PTQ 80
           +CC +   S+     + S+ K       N +I+ L  +     A+ +          P  
Sbjct: 55  LCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNN 114

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
            T   +L +C     +   L +HS L   G+D D F+ T L+++Y   D+ DDA  VFD 
Sbjct: 115 FTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDD 174

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV-ASSCG 199
              + +  W A+      +G   E +  ++++     G++ D F+   VL AC     C 
Sbjct: 175 IPDKNVVSWTAIITGYISSGHFREAIGAFKKL--LEMGLKPDSFSLVKVLAACARLGDC- 231

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
                 G+ I   +   G    V + T+L+DMY + G +  A  +FS M  K++VSWS M
Sbjct: 232 ----TSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTM 287

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I  YA NG+  +AL+LF +M  +S +L P+  TMV VL ACA L AL+ G      + R 
Sbjct: 288 IQGYAFNGLPQQALDLFFQM--QSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRN 345

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
              S   + +AL+ MY++CG +     +F  M ++D V WN+++    ++G+      +F
Sbjct: 346 EFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLF 405

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
             +  HG+ P   +F+ +L  C+H G V EG+  F +M++   + PS+EHY CMVDLLGR
Sbjct: 406 SLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGR 465

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           A  L EA ++I ++ ++P   VWG+LLG C++H +  LAE+  K+L ELEP N+GNYV L
Sbjct: 466 AGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQL 525

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           +++Y+    W+E ++++  ++ + +QK+   S IE+   ++ F+  D+ H   E+++A L
Sbjct: 526 SNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKL 585

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
             L  E+K  G+VP T+ VL+D++ EEKE  +  HSEKLAVAFGLI +     IR+ KNL
Sbjct: 586 DELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNL 645

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCH   K ISK   +EI++RD NRFH F +G CSC DYW
Sbjct: 646 RVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 192/381 (50%), Gaps = 19/381 (4%)

Query: 94  NSLSDALN-------VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI 146
           N LS+ LN       +H+ L     DQD +L+  ++     F S + ++ VF + +   I
Sbjct: 20  NYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNI 79

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206
           ++WN + R L      ++ + LY  M   G G   + FT  +VLKAC         ++ G
Sbjct: 80  FLWNTMIRGLVSKDCFDDAIHLYGSMR--GGGFLPNNFTIPFVLKACARKLD----VRLG 133

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
            +IH+ +++ GY+  V + T+L+ +Y +      A  VF  +  KNVVSW+A+I  Y  +
Sbjct: 134 LKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISS 193

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           G   EA+  F++++     L P+S ++V VL ACA L     G+ I  YI   G+   + 
Sbjct: 194 GHFREAIGAFKKLL--EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVF 251

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           V ++L+ MY +CG LE    +F  M ++D+VSW+++I  Y  +G   +A+ +F +M    
Sbjct: 252 VATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSEN 311

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESM-RKEHMIRPSVEHYACMVDLLGRANKLEE 445
           + P   + V VL AC+  G ++ G      M R E +  P +     ++D+  +   + +
Sbjct: 312 LKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQ 369

Query: 446 AAKIIEDLRIEPGPKVWGSLL 466
           A +I   ++      VW +++
Sbjct: 370 AWEIFTAMK-RKDRVVWNAMM 389


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/665 (35%), Positives = 369/665 (55%), Gaps = 57/665 (8%)

Query: 53  NELIQSLCKQGNLRQALDVLS-----IEPNPTQHTYELL-----LLSCTHHNSLSDALNV 102
           N ++ +  K  N   ALD+ S     +   PT    +++     L +C    ++     V
Sbjct: 83  NSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEV 142

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
           H +   NG   D F+   LI+ Y+    +++A  VF+    + +  WNA+    + +G  
Sbjct: 143 HGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNF 202

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVL-----KAC------------------------ 193
           +   EL++ M      I  D  T+T V+     + C                        
Sbjct: 203 KAAFELFKNMRKEN--IPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTII 260

Query: 194 -VASSCG-FSLLKHGKEIHASVLRH----------GYNGIVHIMTTLIDMYARFGCVMYA 241
            V S+C        G EIHA  L++          G +  + +   LIDMY++      A
Sbjct: 261 SVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 320

Query: 242 GFVFSQMAV--KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
             +F  + +  +NVV+W+ MI  +A+ G + +AL+LF EMI E + + PN+ T+  +L A
Sbjct: 321 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 380

Query: 300 CAALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           CA LAA+  GK IH Y+LR      S   V + L+ MY++CG ++  + VFD M ++  +
Sbjct: 381 CAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAI 440

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           SW S+++ YG+HG G +A+ IF +M   G  P  I+F+ VL ACSH G+V++G   F+SM
Sbjct: 441 SWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSM 500

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
             ++ + P  EHYA  +DLL R  +L++A K ++D+ +EP   VW +LL +CR+H NVEL
Sbjct: 501 SADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVEL 560

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
           AE A  +L E+   N G+Y L++++YA A  W +V R++ L++  G++K PG S ++ ++
Sbjct: 561 AEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQK 620

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
              SF   D  HP   Q++ALL +L   +K  GYVP+T   L+D+D EEK  +++ HSEK
Sbjct: 621 GTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEK 680

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+A+GL+ T  G  IRITKNLR+C DCHS   +ISK  + EI+VRD +RFHHF+NG CS
Sbjct: 681 LALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCS 740

Query: 658 CGDYW 662
           CG YW
Sbjct: 741 CGGYW 745



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 204/427 (47%), Gaps = 64/427 (14%)

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI---YVWNALFRALTLA 159
           H  +  NGF+ + F+   L+ +YS   S+++A  +FD+  +R I     WN++  A   +
Sbjct: 33  HGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKS 92

Query: 160 GRGEEVLELYRRM----NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
                 L+L+ +M    +   T  RSD  +   +L AC +       +   KE+H + +R
Sbjct: 93  SNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGS----LKAVPQTKEVHGNAIR 148

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG---MAF-- 270
           +G    V +   LID YA+ G +  A  VF+ M  K+VVSW+AM+A Y+++G    AF  
Sbjct: 149 NGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFEL 208

Query: 271 ------------------------------EALELFREMIMESHDLCPNSVTMVSVLQAC 300
                                         EAL +FR+MI       PN VT++SVL AC
Sbjct: 209 FKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGS--LPNCVTIISVLSAC 266

Query: 301 AALAALEQGKMIHGYILRR----------GLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           A+L A  QG  IH Y L+           G D  L V +AL+ MY++C   +  + +FD 
Sbjct: 267 ASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDD 326

Query: 351 --MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY--HGVSPSPISFVSVLGACSHAGL 406
             +++R+VV+W  +I  +  +G    A+++F EMI   +GV+P+  +   +L AC+H   
Sbjct: 327 IPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAA 386

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYA-CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           +  GK +   + + H    S    A C++++  +   ++ A  + + +  +     W S+
Sbjct: 387 IRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMS-QKSAISWTSM 445

Query: 466 LGSCRIH 472
           +    +H
Sbjct: 446 MTGYGMH 452



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 163/343 (47%), Gaps = 56/343 (16%)

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
            G R D FT  +VLKAC          + G   H  +  +G+   V I   L+ MY+R G
Sbjct: 4   AGTRLDHFTLPHVLKACGE----LPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 59

Query: 237 CVMYAGFVF---SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS--- 290
            +  A  +F   +Q  + +V+SW+++++ + ++  A+ AL+LF +M +  H+   N    
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 291 -VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
            +++V++L AC +L A+ Q K +HG  +R G    + V +AL+  YA+CG +E    VF+
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 179

Query: 350 HMDKRDVVSWNSLISSYG------------------------------VHGYGGK----- 374
            M+ +DVVSWN++++ Y                               + GY  +     
Sbjct: 180 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 239

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH----- 429
           A+ +F++MI+ G  P+ ++ +SVL AC+  G   +G  +     K  ++    +      
Sbjct: 240 ALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 299

Query: 430 ----YACMVDLLGRANKLEEAAKIIEDLRIEPGPKV-WGSLLG 467
               Y  ++D+  +    + A  I +D+ +E    V W  ++G
Sbjct: 300 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 342


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/597 (38%), Positives = 356/597 (59%), Gaps = 14/597 (2%)

Query: 69  LDVLSI-EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH 127
           LD+L   E  PT   Y   + +C    +L DA  VH+HL  + F  D FL   LI++Y  
Sbjct: 39  LDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCK 98

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG-IRSDRFTY 186
             SV +AR VFD+ RR+ +  W +L          EE + L   + G   G  + + FT+
Sbjct: 99  CGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGL---LPGMLKGRFKPNGFTF 155

Query: 187 TYVLKACVA-SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
             +LKA  A +  G      G++IHA  ++  ++  V++ + L+DMYAR G +  A  VF
Sbjct: 156 ASLLKAAGAHADSGI-----GRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVF 210

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
            ++  KN VSW+A+I+ +AR G    AL  F EM+    +      T  SV  + A L A
Sbjct: 211 DKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFE--ATHFTYSSVFSSIARLGA 268

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           LEQGK +H ++++          + L+ MYA+ G +   + VFD +D +D+V+WN+++++
Sbjct: 269 LEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTA 328

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           +  +G G +A+  F+EM   G+  + ++F+ +L ACSH GLV+EGK  FE M KE+ + P
Sbjct: 329 FAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFE-MMKEYDLEP 387

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
            ++H+  +V LLGRA  L  A   I  + IEP   VWG+LL +CR+H N ++ + A+  +
Sbjct: 388 EIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHV 447

Query: 486 FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSV 545
           FEL+P ++G  VLL ++YA+   WD   RV+R+++  G++K P  S +E++  ++ FV+ 
Sbjct: 448 FELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVAN 507

Query: 546 DEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLI 605
           D+ HP+ E+++ +   +S +++++GYVP    VL  +D +E+E  +  HSEKLA+AF LI
Sbjct: 508 DDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALI 567

Query: 606 NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
               G TIRI KN+R+C DCHS  K+ISK   +EI+VRD NRFHHF NG CSC DYW
Sbjct: 568 EMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/574 (36%), Positives = 355/574 (61%), Gaps = 10/574 (1%)

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
           SCT   S+S    +H+ +  +    D F+  +L+++Y      +DA+ +FD+   + +  
Sbjct: 131 SCT---SVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVS 187

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           WN+L   L+  G     L  + RM  T +G + +  T   V+ AC         L  GK 
Sbjct: 188 WNSLMSGLSGRGYLGACLNAFCRMR-TESGRQPNEVTLLSVVSACA----DMGALDEGKS 242

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           +H  V++ G +G   ++ +LI+MY + G +  A  +F +M V+++VSW++M+  +  NG 
Sbjct: 243 LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGY 302

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
           A + ++LF   +M+   + P+  TMV++L+AC       Q + IH YI R G ++ + + 
Sbjct: 303 AEKGMDLFN--LMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIA 360

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           +AL+ +YA+ G+L   + +F+ +  RD ++W ++++ Y VH  G +AI++F  M+  GV 
Sbjct: 361 TALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVE 420

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
              ++F  +L ACSH+GLVEEGK  FE M + + + P ++HY+CMVDLLGR+ +LE+A +
Sbjct: 421 VDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYE 480

Query: 449 IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
           +I+ + +EP   VWG+LLG+CR++ NVEL +  +++L  L+P++  NY++L+++Y+AA +
Sbjct: 481 LIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGL 540

Query: 509 WDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKE 568
           W +  +V+ L++ R L + PG S IE   K++ FV  D+ HP+ +++H  L  L  +++E
Sbjct: 541 WRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIRE 600

Query: 569 KGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSF 628
            G  P+T+ VL+D+D E K  ++  HSEKLA+AFGL+ T  G  + ITKNLR+C DCHS 
Sbjct: 601 AGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHST 660

Query: 629 TKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KF S    + I++RD  RFHHF +G+CSC DYW
Sbjct: 661 AKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 179/384 (46%), Gaps = 26/384 (6%)

Query: 53  NELIQSLCKQGNLRQALDVL-SIEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHLT 107
           N L+  L  +G L   L+    +     +   E+ LLS    C    +L +  ++H  + 
Sbjct: 189 NSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVV 248

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
             G      +V  LIN+Y     +D A  +F++   R++  WN++       G  E+ ++
Sbjct: 249 KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMD 308

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+  M     GI  D+ T   +L+AC  +  G    +  + IHA + R G+N  + I T 
Sbjct: 309 LFNLMK--RAGINPDQATMVALLRACTDTGLG----RQAESIHAYIHRCGFNADIIIATA 362

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+++YA+ G +  +  +F ++  ++ ++W+AM+A YA +    EA++LF  M+ E  ++ 
Sbjct: 363 LLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEV- 421

Query: 288 PNSVTMVSVLQACAALAALEQGKM---IHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
            + VT   +L AC+    +E+GK    I   + R  ++  L   S +V +  R G+LE  
Sbjct: 422 -DHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYR--VEPRLDHYSCMVDLLGRSGRLEDA 478

Query: 345 QCVFDHMDKRDVVS-WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI---SFVSVLGA 400
             +   M        W +L+ +  V+G     +++ KE+    +S  P    +++ +   
Sbjct: 479 YELIKSMPMEPSSGVWGALLGACRVYG----NVELGKEVAEQLLSLDPSDHRNYIMLSNI 534

Query: 401 CSHAGLVEEGKMLFESMRKEHMIR 424
            S AGL  +   +   M++  + R
Sbjct: 535 YSAAGLWRDASKVRALMKERRLTR 558


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/592 (40%), Positives = 351/592 (59%), Gaps = 26/592 (4%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWNA 151
           N L     VH  +   GF     L   ++++YS    V  A  VF+     +R +  WN+
Sbjct: 179 NCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNS 238

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGT-GIRSDRFTYTYVLKACVASSCGFS---LLKHGK 207
           L     L G  E  L  +  M   GT  +  +R T   +LK+C    C  +   + ++  
Sbjct: 239 LISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYIS 298

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
             H+S+L       V ++T L+DM+AR G +  A  +F  +  KNVV WSAMIA Y +  
Sbjct: 299 SRHSSLL---VAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGS 355

Query: 268 MAFEALELFREMIMESH----DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
              EAL LFR+M+ME +    ++ PN+VT+VSV+ AC+ L A     MIH Y +  GLD 
Sbjct: 356 CPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQ 415

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQIFKE 381
              + SAL+ M A+CG +E G+ VF  MD+  R VVSW+S+I + G+HG G +A+++F E
Sbjct: 416 DARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSE 475

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   G  P+ I+++SVL ACSHAGLVE+GK  F SM K++ + P+ +HYAC+VDLLGRA 
Sbjct: 476 MRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAG 535

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
            L+EA  +I ++ I+    +WGSLL +C +H N +L E   K++  L+  + G++VLLA+
Sbjct: 536 HLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLAN 595

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +Y  A  WD+V R++  L   GL+K+PG+S IE+  ++YSF++ D  HP+ E ++  L  
Sbjct: 596 MYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDG 655

Query: 562 LSAEMKEKG-YVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET-------- 612
           L   +++   YV +T + + D D          HSE+LA+AFGLI   +  T        
Sbjct: 656 LDERVRKAAKYVTETGLNVEDGDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCSCSLRTA 715

Query: 613 --IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             IRITKNLR+C DCH++TK +SK  ++E++VRD +RFHHFR+G CSCGDYW
Sbjct: 716 TPIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 220/460 (47%), Gaps = 28/460 (6%)

Query: 34  CCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHH 93
           C +S   +    SL ++N  +  Q+        QA  V S        T+  LL +C   
Sbjct: 11  CSISHKDTFHWNSLIAKNATQNPQTALTFFTRMQAHAVPS-----NNFTFPALLKACAAL 65

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV--WNA 151
             L   L VH++LT  G   D F    L++ Y        A  VFD+    ++ V  W A
Sbjct: 66  RRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTA 125

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRS-----DRFTYTYVLKACVASSCGFSLLKHG 206
           L  A +  G  +E    + RM        S     D  +   ++ AC A  CG + L+ G
Sbjct: 126 LISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSAC-AVGCGSNCLRRG 184

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--KNVVSWSAMIACYA 264
             +H  V+++G+    H+  +++ MY+    V  A  VF+ + +  ++VVSW+++I+ + 
Sbjct: 185 SAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFX 244

Query: 265 RNGMAFEALELFREMIMESHDLC-PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
            NG A  AL  F +M+ E      PN VT++++L++CA L  +E    +H YI  R    
Sbjct: 245 LNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSL 304

Query: 324 ILP----VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           ++     V++AL+ M+ARCG L L + +FD ++ ++VV W+++I+ Y       +A+++F
Sbjct: 305 LVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLF 364

Query: 380 KEMIYHG------VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           ++M+  G      V P+ ++ VSV+ ACS  G      M+ +      + + +    A +
Sbjct: 365 RQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASA-L 423

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKV-WGSLLGSCRIH 472
           +D+  +   +E   ++  ++       V W S++G+  IH
Sbjct: 424 IDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIH 463


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/615 (37%), Positives = 359/615 (58%), Gaps = 21/615 (3%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI++L       +AL +    L     P   TY  ++ +C   +     L VH+H+  
Sbjct: 164 NSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVK 223

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GF+ D ++V+ LI++Y++   +  A+ +F+    R +  WNA+               +
Sbjct: 224 SGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMV 283

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + RM      +  D  ++  ++        G++++    E            +V    ++
Sbjct: 284 FDRM------VCRDVISWNTMIN-------GYAIVGKIDEAKRLFDEMPERNLVS-WNSM 329

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +  + + G V  A  +FS+M  ++VVSW++M+ACYA+ G   EAL LF +M   +  + P
Sbjct: 330 LAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQM--RAVGVKP 387

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
              T+VS+L ACA L AL++G  +H YI    ++    V +ALV MYA+CGK+ L   VF
Sbjct: 388 TEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF 447

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + M+ +DV++WN++I+   +HG   +A Q+FKEM   GV P+ I+FV++L ACSHAG+V+
Sbjct: 448 NAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVD 507

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG+ L + M   + I P VEHY C++DLL RA  LEEA ++I  + +EP P   G+LLG 
Sbjct: 508 EGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGG 567

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH N EL E   KRL  L+P ++G Y+LL+++YAAA  WD+ ++V+ L++  G+ KVP
Sbjct: 568 CRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVP 627

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK-GYVPQTKVVLYDLDAEEK 587
           G S IE+K  ++ FV+ D  HP+  +++  L  +   +K   GY   T  VL D++ E+K
Sbjct: 628 GVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDK 687

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
           E  +  HSEKLA+A+GL++    E IRI KNLR+C DCH   K ISK   +EI+VRD NR
Sbjct: 688 EHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNR 747

Query: 648 FHHFRNGVCSCGDYW 662
           FHHF +G CSC D+W
Sbjct: 748 FHHFEDGECSCLDFW 762



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 196/385 (50%), Gaps = 23/385 (5%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A+ +F   +     ++N+L RAL+ +    E L LY  M    +G++ D  TY +V+KAC
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTM--LQSGLKPDHMTYPFVIKAC 205

Query: 194 VASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
             SS   F LL     +H  V++ G+    +I+++LI +YA    +  A  +F+  + ++
Sbjct: 206 NESSVTWFGLL-----VHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARD 260

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           VVSW+AMI  Y ++     A  +F  M+      C + ++  +++   A +  +++ K +
Sbjct: 261 VVSWNAMIDGYVKHVEMGHARMVFDRMV------CRDVISWNTMINGYAIVGKIDEAKRL 314

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
              +  R L S     ++++  + +CG +E    +F  M  RDVVSWNS+++ Y   G  
Sbjct: 315 FDEMPERNLVSW----NSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKP 370

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +A+ +F +M   GV P+  + VS+L AC+H G +++G  L   +    +   S+   A 
Sbjct: 371 NEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA- 429

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE--LEP 490
           +VD+  +  K+  A ++   +  +     W +++    IH NV+ A++  K + E  +EP
Sbjct: 430 LVDMYAKCGKISLATQVFNAMESK-DVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEP 488

Query: 491 TNAGNYVLLADVYAAADMWDEVKRV 515
            N   +V +    + A M DE +++
Sbjct: 489 -NDITFVAILSACSHAGMVDEGQKL 512



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 141/304 (46%), Gaps = 21/304 (6%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM-YAGFVFSQMAVKNVVSWSAMIA 261
           L+H K++HA ++ H  +         +   + F   + YA  +F  +       ++++I 
Sbjct: 109 LRHLKQVHAQIITHHNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIR 168

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
             + +    EAL L+  M+     L P+ +T   V++AC   +    G ++H ++++ G 
Sbjct: 169 ALSSSKTPLEALPLYHTMLQSG--LKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGF 226

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           +    +VS+L+ +YA    L   + +F+    RDVVSWN++I  Y  H   G A  +F  
Sbjct: 227 ECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDR 286

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M+   V    IS+ +++   +  G ++E K LF+ M + +++      +  M+    +  
Sbjct: 287 MVCRDV----ISWNTMINGYAIVGKIDEAKRLFDEMPERNLVS-----WNSMLAGFVKCG 337

Query: 442 KLEEAAKIIEDLRIEPGPKV--WGSLLGSCRIHC---NVELAERASKRLFELEPTNAGNY 496
            +E+A  +  ++   P   V  W S+L +C   C   N  LA     R   ++PT A   
Sbjct: 338 NVEDAFGLFSEM---PCRDVVSWNSML-ACYAQCGKPNEALALFDQMRAVGVKPTEATVV 393

Query: 497 VLLA 500
            LL+
Sbjct: 394 SLLS 397


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/668 (34%), Positives = 378/668 (56%), Gaps = 50/668 (7%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCT 91
           ++L SS +P    S   N L++ L + G  R  +     +  +     + ++  +L + +
Sbjct: 67  LNLFSSISPLP-ESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVS 125

Query: 92  HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNA 151
             ++L + + +H          DPF+ T L+++Y+    ++ AR+VFD+  +R +  WN 
Sbjct: 126 KVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNT 185

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           +       G  +E  +L+  M  +   +  D      ++ AC  +      +++ + I+ 
Sbjct: 186 MIERYCRFGLLDEAFKLFEEMKDSN--VMPDEMILCNIVSACGRTGN----MRYNRAIYD 239

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCV--------------------MYAGF-------- 243
            ++ +      H++T L+ MYA  GC+                    M +G+        
Sbjct: 240 FLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDD 299

Query: 244 ---VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
              +F Q  +K++V W+ MI+ YA +    EAL +F EM      + P+ VTM+SV+ AC
Sbjct: 300 ARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSG--IKPDVVTMLSVISAC 357

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
             L  L++ K +H Y    GL+S+LP+ +AL+ MYA+CG L+  + VF+ M  R+VVSW+
Sbjct: 358 VNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWS 417

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           S+I+++ +HG    ++ +F +M    V P+ ++FV VL  CSH+GLVEEGK +F SM  E
Sbjct: 418 SMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDE 477

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           + I P +EHY CMVDL GRAN L EA ++IE + + P   +WGSL+ +CR+H  +EL E 
Sbjct: 478 YNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGEL 537

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
           A+KR+ +LEP + G  VL++++YA    WD V+ ++ ++E + + K  G SRI++  K +
Sbjct: 538 AAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSH 597

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
            F+  D+ H Q  +++  L  + +++K  GYVP    VL D++ EEK+ +VL HSEKLA+
Sbjct: 598 EFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLAL 657

Query: 601 AFGLINTSKGE------TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
            FGL+N  K E       IRI KNLR+CEDCH+F K +SK    EI+VRD  RFH +++G
Sbjct: 658 CFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDG 717

Query: 655 VCSCGDYW 662
           +CSC DYW
Sbjct: 718 LCSCRDYW 725


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/641 (36%), Positives = 358/641 (55%), Gaps = 72/641 (11%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS--HFDSVDDARHVFDKTR 142
           L L       SL     +H  +  +G  QD ++   L+  Y+  HF + D A  VF    
Sbjct: 35  LKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIP 94

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
              +++WN + +      +  + +  Y RM       R ++FTY  + KAC  +      
Sbjct: 95  NPNVFIWNIVIKGCLENNKLFKAIYFYGRMV---IDARPNKFTYPTLFKACSVAQA---- 147

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG-----------------C--VMYAGF 243
           ++ G++IH  V++HG    VHI +  I MYA FG                 C   M  G+
Sbjct: 148 VQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGY 207

Query: 244 V-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI------------ 280
           +           F+QM VKN+ SW+ MI   A+ G   +A +LF EM             
Sbjct: 208 LKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVD 267

Query: 281 -----------------MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG--L 321
                            M+  +  P    + SVL AC+ + A++QG+ +H Y+ R    L
Sbjct: 268 GYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKL 327

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           D++L   +AL+ MYA+CG+L++G  VF+ M +R++ +WN++I    +HG    A+++F +
Sbjct: 328 DAVLG--TALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSK 385

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           +    + P+ I+ V VL AC+HAG V++G  +F++MR+ + + P +EHY CMVDLLGR+ 
Sbjct: 386 LQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSG 445

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
              EA  +I  + ++P   VWG+LLG+CRIH N +LAER  K L ELEP N+G YVLL++
Sbjct: 446 LFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSN 505

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YA    +D+V ++++L++ RG++ VPG S +++   ++ F   D  HPQ ++++  L  
Sbjct: 506 IYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKI 565

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           +   ++  G+ P T  VL+D+D EEKE  V  HSEKLA+AFGLINT  G+ I I KNLR+
Sbjct: 566 IKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRV 625

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C+DCHS TK IS+  ++EI+VRD  R+HHF+NG CSC D+W
Sbjct: 626 CDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/615 (36%), Positives = 364/615 (59%), Gaps = 14/615 (2%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+  L +    R AL    D+ +    P Q +   L+ +     +L +   VH++   
Sbjct: 318 NTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIR 377

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           NG D +  +   LI++Y+    V    + F+    + +  W  +           E + L
Sbjct: 378 NGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINL 437

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +R++   G  +  D      VL+AC     G       +EIH  V +     I+ +   +
Sbjct: 438 FRKVQVKGMDV--DPMMIGSVLRAC----SGLKSRNFIREIHGYVFKRDLADIM-LQNAI 490

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +++Y   G   YA   F  +  K++VSW++MI C   NG+  EALELF  +  +  ++ P
Sbjct: 491 VNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSL--KQTNIQP 548

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +S+ ++S L A A L++L++GK IHG+++R+G     P+ S+LV MYA CG +E  + +F
Sbjct: 549 DSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMF 608

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             + +RD++ W S+I++ G+HG G +AI +FK+M    V P  I+F+++L ACSH+GL+ 
Sbjct: 609 HSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMV 668

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EGK  FE M+  + + P  EHYACMVDLL R+N LEEA + +  + I+P  +VW +LLG+
Sbjct: 669 EGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGA 728

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C IH N EL E A+K L + +  N+G Y L+++++AA   W++V+ V+  ++  GL+K P
Sbjct: 729 CHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNP 788

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM-KEKGYVPQTKVVLYDLDAEEK 587
           G S IEV  K+++F++ D+ HPQ + ++  L   +  + K+ GY+ QTK V +++  EEK
Sbjct: 789 GCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEK 848

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
            +++  HSE+LA+ +GL+ T KG +IRITKNLR+C+DCH+F K  S+ + + ++VRD NR
Sbjct: 849 TQMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANR 908

Query: 648 FHHFRNGVCSCGDYW 662
           FHHF  G+CSCGD+W
Sbjct: 909 FHHFERGLCSCGDFW 923



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 191/381 (50%), Gaps = 24/381 (6%)

Query: 40  SSTTPTSLSSRNKNELIQSLCKQGNLR---QALDVLSIEPNPT----QHTYELLLLSCTH 92
           S  TP  L S + N L      +G L    Q+L +LS  P  T    +H + LLL  C  
Sbjct: 4   SIVTPLPLKSISVNTL-----NKGTLNPAFQSLTLLSTHPLATPSRLEHAHSLLLDLCVA 58

Query: 93  HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
             +L     +H+ L  +      FL TKL+++Y    S+ DA  VFD+   RTI+ WNA+
Sbjct: 59  VKALPQGQQLHARLLKSHLS--AFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAM 116

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
             A   +G+  E +ELY+ M   G  I  D  T+  VLKAC A   G S L  G EIH  
Sbjct: 117 MGAFVSSGKYLEAIELYKEMRVLGVAI--DACTFPSVLKACGA--LGESRL--GAEIHGV 170

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS--QMAVKNVVSWSAMIACYARNGMAF 270
            ++ G+   V +   LI MY + G +  A  +F    M  ++ VSW+++I+ +   G   
Sbjct: 171 AVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCL 230

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
           EAL LFR M  +   +  N+ T V+ LQ     + ++ G  IHG  L+    + + V +A
Sbjct: 231 EALSLFRRM--QEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANA 288

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           L+ MYA+CG++E  + VF  M  RD VSWN+L+S    +     A+  F++M      P 
Sbjct: 289 LIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPD 348

Query: 391 PISFVSVLGACSHAGLVEEGK 411
            +S ++++ A   +G +  GK
Sbjct: 349 QVSVLNLIAASGRSGNLLNGK 369


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/574 (36%), Positives = 355/574 (61%), Gaps = 10/574 (1%)

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
           SCT   S+S    +H+ +  +    D F+  +L+++Y      +DA+ +FD+   + +  
Sbjct: 74  SCT---SVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVS 130

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           WN+L   L+  G     L  + RM  T +G + +  T   V+ AC         L  GK 
Sbjct: 131 WNSLMSGLSGRGYLGACLNAFCRMR-TESGRQPNEVTLLSVVSACA----DMGALDEGKS 185

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           +H  V++ G +G   ++ +LI+MY + G +  A  +F +M V+++VSW++M+  +  NG 
Sbjct: 186 LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGY 245

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
           A + ++LF   +M+   + P+  TMV++L+AC       Q + IH YI R G ++ + + 
Sbjct: 246 AEKGMDLFN--LMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIA 303

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           +AL+ +YA+ G+L   + +F+ +  RD ++W ++++ Y VH  G +AI++F  M+  GV 
Sbjct: 304 TALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVE 363

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
              ++F  +L ACSH+GLVEEGK  FE M + + + P ++HY+CMVDLLGR+ +LE+A +
Sbjct: 364 VDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYE 423

Query: 449 IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
           +I+ + +EP   VWG+LLG+CR++ NVEL +  +++L  L+P++  NY++L+++Y+AA +
Sbjct: 424 LIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGL 483

Query: 509 WDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKE 568
           W +  +V+ L++ R L + PG S IE   K++ FV  D+ HP+ +++H  L  L  +++E
Sbjct: 484 WRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIRE 543

Query: 569 KGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSF 628
            G  P+T+ VL+D+D E K  ++  HSEKLA+AFGL+ T  G  + ITKNLR+C DCHS 
Sbjct: 544 AGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHST 603

Query: 629 TKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KF S    + I++RD  RFHHF +G+CSC DYW
Sbjct: 604 AKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 178/386 (46%), Gaps = 30/386 (7%)

Query: 53  NELIQSLCKQGNLRQALDVL-SIEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHLT 107
           N L+  L  +G L   L+    +     +   E+ LLS    C    +L +  ++H  + 
Sbjct: 132 NSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVV 191

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
             G      +V  LIN+Y     +D A  +F++   R++  WN++       G  E+ ++
Sbjct: 192 KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMD 251

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+  M     GI  D+ T   +L+AC  +  G    +  + IHA + R G+N  + I T 
Sbjct: 252 LFNLMK--RAGINPDQATMVALLRACTDTGLG----RQAESIHAYIHRCGFNADIIIATA 305

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+++YA+ G +  +  +F ++  ++ ++W+AM+A YA +    EA++LF  M+ E  ++ 
Sbjct: 306 LLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEV- 364

Query: 288 PNSVTMVSVLQACAALAALEQGK-----MIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
            + VT   +L AC+    +E+GK     M   Y +   LD      S +V +  R G+LE
Sbjct: 365 -DHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH----YSCMVDLLGRSGRLE 419

Query: 343 LGQCVFDHMDKRDVVS-WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI---SFVSVL 398
               +   M        W +L+ +  V+G     +++ KE+    +S  P    +++ + 
Sbjct: 420 DAYELIKSMPMEPSSGVWGALLGACRVYG----NVELGKEVAEQLLSLDPSDHRNYIMLS 475

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIR 424
              S AGL  +   +   M++  + R
Sbjct: 476 NIYSAAGLWRDASKVRALMKERRLTR 501


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/585 (37%), Positives = 353/585 (60%), Gaps = 7/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T    L SC    +     +VH       +D+D ++   L+ +Y+    + +A+  
Sbjct: 203 PNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQF 262

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++  +  +  W+ +      + + +E LEL+ RM  +   +  + FT+  VL+AC +  
Sbjct: 263 FEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSV-VVPNNFTFASVLQACAS-- 319

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
               LL  G +IH+ VL+ G +  V +   L+D+YA+ G +  +  +F+    KN V+W+
Sbjct: 320 --LVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWN 377

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            +I  Y + G   +AL LF  M+    D+ P  VT  SVL+A A+L ALE G+ IH   +
Sbjct: 378 TIIVGYVQLGDGEKALNLFSNML--GLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTI 435

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           +   +    V ++L+ MYA+CG+++  +  FD MDK+D VSWN+LI  Y +HG G +A+ 
Sbjct: 436 KTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALN 495

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F  M      P+ ++FV VL ACS+AGL+++G+  F+SM +++ I P +EHY CMV LL
Sbjct: 496 LFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLL 555

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GR+ + +EA K+I ++  +P   VW +LLG+C IH N++L +  ++R+ E+EP +   +V
Sbjct: 556 GRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHV 615

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++YA A  WD V  V++ ++ + ++K PG S +E +  ++ F   D  HP  + + A
Sbjct: 616 LLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFA 675

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
           +L  L  + ++ GYVP   VVL D++ +EKER++  HSE+LA+AFGLI    G +IRI K
Sbjct: 676 MLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIK 735

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH+  K +SK   +EI++RD+NRFHHFR GVCSCGDYW
Sbjct: 736 NLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 196/373 (52%), Gaps = 9/373 (2%)

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
           L+VH+++   G   D F+ T LI+ YS   +VD AR VFD    + +  W  +       
Sbjct: 124 LSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAEN 183

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
              E+ L L+ +M     G R + FT +  LK+C     G    K GK +H   L+  Y+
Sbjct: 184 YCHEDSLLLFCQMR--IMGYRPNNFTISAALKSCN----GLEAFKVGKSVHGCALKVCYD 237

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             +++   L+++Y + G +  A   F +M   +++ WS MI+ YA++  + EALELF  M
Sbjct: 238 RDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRM 297

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
             +S  + PN+ T  SVLQACA+L  L  G  IH  +L+ GLDS + V +AL+ +YA+CG
Sbjct: 298 -RQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCG 356

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           ++E    +F    +++ V+WN++I  Y   G G KA+ +F  M+   + P+ +++ SVL 
Sbjct: 357 EIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLR 416

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           A +    +E G+ +     K    + SV   + ++D+  +  ++++ A++  D   +   
Sbjct: 417 ASASLVALEPGRQIHSLTIKTMYNKDSVVANS-LIDMYAKCGRIDD-ARLTFDKMDKQDE 474

Query: 460 KVWGSLLGSCRIH 472
             W +L+    IH
Sbjct: 475 VSWNALICGYSIH 487



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 186/387 (48%), Gaps = 11/387 (2%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           H+Y  +L     +   +   ++H H+  +G   D F    L+N Y HF  ++DA  +FD+
Sbjct: 4   HSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDE 63

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
                   +  L +  + + + +    L  R+   G  +  ++F +T +LK  V+     
Sbjct: 64  MPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEV--NQFVFTTLLKLLVSMDLAD 121

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           + L     +HA V + G+     + T LID Y+  G V  A  VF  +  K++VSW+ M+
Sbjct: 122 TCLS----VHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMV 177

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           ACYA N    ++L LF +M +  +   PN+ T+ + L++C  L A + GK +HG  L+  
Sbjct: 178 ACYAENYCHEDSLLLFCQMRIMGYR--PNNFTISAALKSCNGLEAFKVGKSVHGCALKVC 235

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
            D  L V  AL+ +Y + G++   Q  F+ M K D++ W+ +IS Y       +A+++F 
Sbjct: 236 YDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFC 295

Query: 381 EMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
            M     V P+  +F SVL AC+   L+  G  +   + K  +   +V     ++D+  +
Sbjct: 296 RMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGL-DSNVFVSNALMDVYAK 354

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLL 466
             ++E + K+      E     W +++
Sbjct: 355 CGEIENSVKLFTG-STEKNEVAWNTII 380


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/565 (41%), Positives = 341/565 (60%), Gaps = 17/565 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH ++   GF  +  +   LI ++S     D+A  VF K   + +  W A+       G 
Sbjct: 318 VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGL 377

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            E+ +E Y  M   G  +  D  T   VL AC     G  LL  G  +H    R G    
Sbjct: 378 PEKAVETYTIMEHEG--VVPDEITIASVLSACA----GLGLLDKGIMLHEFADRTGLTSY 431

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V +  +LIDMY++  C+  A  VF ++  KNV+SW+++I     N  +FEAL  F++MI+
Sbjct: 432 VIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL 491

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARCG 339
               L PNSVT+VSVL ACA + AL  GK IH + LR GL  D  LP  +AL+ MY RCG
Sbjct: 492 S---LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLP--NALLDMYVRCG 546

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           ++E     F+  +K DV SWN L++ Y   G GG A+++F +MI   V+P  I+F S+L 
Sbjct: 547 RMEPAWNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLC 605

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           ACS +G+V +G   FESM  +  I P+++HYA +VDLLGRA +LE+A + I+ + I+P P
Sbjct: 606 ACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDP 665

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
            +WG+LL +CRI+ NVEL E A++ +FE++  + G Y+LL ++YA +  WDEV RV++++
Sbjct: 666 AIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIM 725

Query: 520 EARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579
               L   PG S +EV  ++++F++ D+FHPQ ++++A+L     +M+  G         
Sbjct: 726 RENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRR 785

Query: 580 YDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKE 639
            D+DA + E I  GHSE+LA+AFGLINT  G  I +TKNL +CE+CH+  KFISK   + 
Sbjct: 786 DDIDASKAE-IFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRG 844

Query: 640 ILVRDVNRFHHFRNGVCSCGD--YW 662
           I VRD  +FHHF++GVCSCGD  YW
Sbjct: 845 ISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 207/380 (54%), Gaps = 12/380 (3%)

Query: 40  SSTTPTSLSSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNS 95
           S   P+S++++N N LI  LC +G+L +AL     +  ++ +  + TY  LL  C    +
Sbjct: 50  SVLNPSSITAQNPNSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRA 109

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRA 155
            S+   VHS+++         L   L++++  F  + +A +VF K   R ++ WN L   
Sbjct: 110 ASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGG 169

Query: 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
              AG  +E L LY RM     GIR D +T+  VL+ C     G   L  G+E+H  V+R
Sbjct: 170 YAKAGYFDEALNLYHRM--LWVGIRPDVYTFPCVLRTC----GGLPDLARGREVHLHVIR 223

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
           +G+   V ++  LI MY + G +  A  VF +M  ++ +SW+AMI+ Y  N +  E L L
Sbjct: 224 YGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRL 283

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F   +M    + P+ +TM SV+ AC AL     G+ +HGY+++ G  + + V ++L+ M+
Sbjct: 284 F--FMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMH 341

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           +  G  +  + VF  M+ +D+VSW ++IS Y  +G   KA++ +  M + GV P  I+  
Sbjct: 342 SSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIA 401

Query: 396 SVLGACSHAGLVEEGKMLFE 415
           SVL AC+  GL+++G ML E
Sbjct: 402 SVLSACAGLGLLDKGIMLHE 421



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 173/421 (41%), Gaps = 70/421 (16%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    K G   +A++  +I  +    P + T   +L +C     L   + +H      G
Sbjct: 368 MISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTG 427

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
                 +   LI++YS    +D A  VF +   + +  W ++   L L  R  E L  ++
Sbjct: 428 LTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQ 487

Query: 171 RMNGTGTGIRSDRFTYTYVLKACV---ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           +M      ++ +  T   VL AC    A SC       GKEIHA  LR G      +   
Sbjct: 488 QMI---LSLKPNSVTLVSVLSACARIGALSC-------GKEIHAHALRTGLGFDGFLPNA 537

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+DMY R G +  A   F+    K+V SW+ ++  YA+ G    A+ELF +MI    D+ 
Sbjct: 538 LLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMI--ESDVN 594

Query: 288 PNSVTMVSVLQACAALAALEQG-----KMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
           P+ +T  S+L AC+    +  G      M H + +   L     VV  L     R G+LE
Sbjct: 595 PDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLL----GRAGRLE 650

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
                                           A +  K+M    + P P  + ++L AC 
Sbjct: 651 -------------------------------DAYEFIKKM---PIDPDPAIWGALLNACR 676

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR-----IEP 457
               VE G++  + + +  M   SV +Y  + +L   + K +E A++ + +R     ++P
Sbjct: 677 IYQNVELGELAAQHIFE--MDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDP 734

Query: 458 G 458
           G
Sbjct: 735 G 735


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/595 (37%), Positives = 360/595 (60%), Gaps = 10/595 (1%)

Query: 69  LDVL-SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH 127
           LD+L + E  PT   Y  ++ +C    +L+ A  +H+HL+ +    D FL+  LI++Y  
Sbjct: 48  LDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCK 107

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
             +V DARHVFDK   R +  W  L           E + L   M       R + FT+T
Sbjct: 108 CGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDM--LRARFRPNGFTFT 165

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
            +LKA    +CG   +  G+++HA  +++ ++  V++ + L+DMYAR   +  A  VF +
Sbjct: 166 SLLKA--TGACGGCSI--GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDR 221

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           +  KN VSW+A+IA +AR       L  F EM  + +       T  S+  A A + ALE
Sbjct: 222 LVSKNEVSWNALIAGFARKADGETTLMKFAEM--QRNGFGATHFTYSSMFSAFARIGALE 279

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
           QG+ +H ++++ G      V + ++ MYA+ G +   + VFD MDKRD+V+WN+++++  
Sbjct: 280 QGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALA 339

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
            +G G +A+  F+E+   G+  + I+F+SVL ACSH GLV+EGK  F+ M K++ ++P +
Sbjct: 340 QYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEI 398

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           +HY   VDLLGRA  L+EA   +  + +EP   VWG+LLG+CR+H N ++ + A+  +FE
Sbjct: 399 DHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFE 458

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           L+P + G  VLL ++YA+   W++  RV+++++A G++K P  S ++++  ++ FV+ D+
Sbjct: 459 LDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDD 518

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
            HP+   ++ +   ++  +K+ GYVP T  VL  ++ +E+E  +  HSEK+A+AF LIN 
Sbjct: 519 THPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINM 578

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             G +IRI KN+R+C DCHS  K++SK   +EI+VRD NRFHHF  G CSCGDYW
Sbjct: 579 PAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/668 (35%), Positives = 370/668 (55%), Gaps = 52/668 (7%)

Query: 28  KPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLL 87
           +P        L+++    ++S R+  +L  S+ K G    A  VLS+      +    L 
Sbjct: 154 RPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSG----AGGVLSV-----SNALVALY 204

Query: 88  LSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIY 147
           + C    +  DA  V     D   D+D    T ++  Y     V  AR VF++   +   
Sbjct: 205 MKCEALEATRDARKV----LDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDV 260

Query: 148 VWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGK 207
           VWNA+      +G   E  EL+RRM      +  D FT+T VL AC  ++ GF    HGK
Sbjct: 261 VWNAMISGYVHSGMVVEAFELFRRM--VLERVPLDEFTFTSVLSAC--ANAGF--FAHGK 314

Query: 208 EIHASVLRHGYNGI----VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
            +H  + R   N +    + +   L+ +Y++ G +  A  +F  M  K+VVSW+ +++ Y
Sbjct: 315 SVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGY 374

Query: 264 ARNGMAFEALELFREMI-----------------------------MESHDLCPNSVTMV 294
             +    +A+E+F EM                              M + D+ P   T  
Sbjct: 375 VESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYA 434

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
             + AC  L +L+ GK +HG++++ G +      +AL+TMYARCG ++    +F  M   
Sbjct: 435 GAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNI 494

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           D VSWN++IS+ G HG+G +A+++F  M+  G+ P  ISF++VL AC+H+GLV+EG   F
Sbjct: 495 DSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYF 554

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
           ESM+++  I P  +HY  ++DLLGRA ++ EA  +I+ +  EP P +W ++L  CR   +
Sbjct: 555 ESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGD 614

Query: 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
           +EL   A+ +LF++ P + G Y+LL++ Y+AA  W +  RV++L+  RG++K PG S IE
Sbjct: 615 MELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIE 674

Query: 535 VKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGH 594
              K++ FV  D  HP+  +++  L  + A M++ GYVP TKVVL+D++  +KE I+  H
Sbjct: 675 AGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAH 734

Query: 595 SEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
           SE+LAV FGL+    G T+ + KNLR+C+DCH+   F+SK   +EI+VRDV RFHHF++G
Sbjct: 735 SERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDG 794

Query: 655 VCSCGDYW 662
            CSCG+YW
Sbjct: 795 ECSCGNYW 802



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 39/224 (17%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQM--AVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           T+L+  YA  G +  A   F  +  A ++ V  +A+I+ YAR   A  A+ +FR + + S
Sbjct: 92  TSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSL-LAS 150

Query: 284 HDLCPNSVTMVSVLQACAALA--ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
             L P+  +  ++L A   L   ++     +   +L+ G   +L V +ALV +Y +C  L
Sbjct: 151 GSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEAL 210

Query: 342 EL---GQCVFDHMDKRDV-------------------------------VSWNSLISSYG 367
           E     + V D M  +D                                V WN++IS Y 
Sbjct: 211 EATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYV 270

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             G   +A ++F+ M+   V     +F SVL AC++AG    GK
Sbjct: 271 HSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGK 314


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/628 (36%), Positives = 356/628 (56%), Gaps = 41/628 (6%)

Query: 69  LDVLSIEPN--PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS 126
           LD++S E    P ++T+  L+ +    +SLS   ++H     +    D F+   LI+ Y 
Sbjct: 120 LDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYF 179

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
               +D A  VF   + + +  WN++       G  ++ LEL+++M      +++   T 
Sbjct: 180 SCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME--SEDVKASHVTM 237

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV-------- 238
             VL AC         L+ G+ + + +  +  N  + +   ++DMY + G +        
Sbjct: 238 VGVLSACAK----IRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFD 293

Query: 239 ------------MYAGFVFSQ-----------MAVKNVVSWSAMIACYARNGMAFEALEL 275
                       M  G+  S+           M  K++V+W+A+I+ Y +NG   EAL +
Sbjct: 294 AMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLV 353

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F E+ ++  ++  N +T+VS L ACA + ALE G+ IH YI + G+     V SAL+ MY
Sbjct: 354 FHELQLQK-NIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMY 412

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ++CG LE  + VF+ ++KRDV  W+++I    +HG G +A+ +F +M    V P+ ++F 
Sbjct: 413 SKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFT 472

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
           +V  ACSH GLV+E + LF  M   + I P  +HYAC+VD+LGR+  LE+A K IE + I
Sbjct: 473 NVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPI 532

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
            P   VWG+LLG+C+IH N+ LAE A  RL ELEP N G +VLL+++YA +  WD V  +
Sbjct: 533 PPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSEL 592

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT 575
           ++ +   GL+K PG S IE+   ++ F+S D  HP  E+++  L  +  ++K  GY P+ 
Sbjct: 593 RKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEM 652

Query: 576 KVVLYDLDAEE-KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
             VL  ++ EE KE+ +  HSEKLA+ +GLI+T   + IR+ KNLR+C DCH+  K IS+
Sbjct: 653 SHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQ 712

Query: 635 FANKEILVRDVNRFHHFRNGVCSCGDYW 662
             N+EI+VRD  RFHHFRNG CSC D+W
Sbjct: 713 LYNREIIVRDRYRFHHFRNGQCSCNDFW 740



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 217/448 (48%), Gaps = 48/448 (10%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKL--INVYSHFDSVDDARHVFDKTRRRTIYVWNA 151
           +SL      H+H+   G   DP+  +KL  I   S F S++ AR VFD+  +   + WN 
Sbjct: 42  SSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNT 101

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           L RA          +  +  M  + +    +++T+ +++KA    +   S L  G+ +H 
Sbjct: 102 LIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKA----AAEVSSLSLGQSLHG 157

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
             ++      V +  +LI  Y   G +  A  VF+ +  K+VVSW++MI  + + G   +
Sbjct: 158 MAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDK 217

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           ALELF++  MES D+  + VTMV VL ACA +  LE G+ +  YI    ++  L + +A+
Sbjct: 218 ALELFKK--MESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAM 275

Query: 332 VTMYARCGKLELGQCVFDHMD-------------------------------KRDVVSWN 360
           + MY +CG +E  + +FD M+                               K+D+V+WN
Sbjct: 276 LDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWN 335

Query: 361 SLISSYGVHGYGGKAIQIFKEM-IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           +LIS+Y  +G   +A+ +F E+ +   +  + I+ VS L AC+  G +E G+ +  S  K
Sbjct: 336 ALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWI-HSYIK 394

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH-CNVELA 478
           ++ I+ +    + ++ +  +   LE+A ++   +  +    VW +++G   +H C  E  
Sbjct: 395 KNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE-KRDVFVWSAMIGGLAMHGCGSE-- 451

Query: 479 ERASKRLFELEPTNAG-NYVLLADVYAA 505
             A    ++++  N   N V   +V+ A
Sbjct: 452 --AVDMFYKMQEANVKPNGVTFTNVFCA 477



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 7/146 (4%)

Query: 53  NELIQSLCKQGNLRQALDV---LSIEPNPTQHTYELL--LLSCTHHNSLSDALNVHSHLT 107
           N LI +  + G   +AL V   L ++ N   +   L+  L +C    +L     +HS++ 
Sbjct: 335 NALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIK 394

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            NG   + ++ + LI++YS    ++ AR VF+   +R ++VW+A+   L + G G E ++
Sbjct: 395 KNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVD 454

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKAC 193
           ++ +M      ++ +  T+T V  AC
Sbjct: 455 MFYKMQ--EANVKPNGVTFTNVFCAC 478


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/653 (38%), Positives = 367/653 (56%), Gaps = 33/653 (5%)

Query: 14  RSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS 73
           RSP  T+S   L    SS       N++    S      N+LI S  + G++  A+ V  
Sbjct: 12  RSPLLTSSFVTLSKYVSSHTHQHEFNNNNVIAS------NKLIASYVRCGDIDSAVRVFE 65

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV----YSHFD 129
                +  T+  +L +             H       F++ P   T   N+    + H  
Sbjct: 66  DMKVKSTVTWNSILAAFAKKPG-------HFEYARQLFEKIPQPNTVSYNIMLACHWHHL 118

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
            V DAR  FD    + +  WN +  AL   G   E   L+  M         +  +++ +
Sbjct: 119 GVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMP------EKNCVSWSAM 172

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           +   VA  CG  L    +  +A+ +R      V   T +I  Y +FG V  A  +F +M+
Sbjct: 173 VSGYVA--CG-DLDAAVECFYAAPMRS-----VITWTAMITGYMKFGRVELAERLFQEMS 224

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
           ++ +V+W+AMIA Y  NG A + L LFR M+     + PN++++ SVL  C+ L+AL+ G
Sbjct: 225 MRTLVTWNAMIAGYVENGRAEDGLRLFRTML--ETGVKPNALSLTSVLLGCSNLSALQLG 282

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           K +H  + +  L S     ++LV+MY++CG L+    +F  + ++DVV WN++IS Y  H
Sbjct: 283 KQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQH 342

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G G KA+++F EM   G+ P  I+FV+VL AC+HAGLV+ G   F +MR++  I    EH
Sbjct: 343 GAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEH 402

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
           YACMVDLLGRA KL EA  +I+ +  +P P ++G+LLG+CRIH N+ LAE A+K L EL+
Sbjct: 403 YACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELD 462

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFH 549
           PT A  YV LA+VYAA + WD V  ++R ++   + K+PG S IE+   ++ F S D  H
Sbjct: 463 PTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLH 522

Query: 550 PQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSK 609
           P+   +H  L +L  +MK  GYVP  + VL+D+  E KE+++L HSEKLA+AFGL+    
Sbjct: 523 PELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPL 582

Query: 610 GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           G  IR+ KNLR+C DCHS TK+IS    +EI+VRD  RFHHF++G CSC DYW
Sbjct: 583 GVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/593 (37%), Positives = 356/593 (60%), Gaps = 42/593 (7%)

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
           D++S   +P  +TY  +L +C+  ++L   L +H  +   G D + F+   LI +Y    
Sbjct: 123 DMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCG 182

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
            + +AR V D+ + + +  WN++        + ++ L++ R M+G     + D  T   +
Sbjct: 183 CLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQ--KPDACTMASL 240

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           L A   +S                                        V+Y   +F  + 
Sbjct: 241 LPAVTNTSSEN-------------------------------------VLYVEEMFMNLE 263

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            K++VSW+ MI+ Y +N M  ++++L+ +M     ++ P+++T  SVL+AC  L+AL  G
Sbjct: 264 KKSLVSWNVMISVYMKNSMPGKSVDLYLQM--GKCEVEPDAITCASVLRACGDLSALLLG 321

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           + IH Y+ R+ L   + + ++L+ MYARCG LE  + VFD M  RDV SW SLIS+YG+ 
Sbjct: 322 RRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMT 381

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G G  A+ +F EM   G SP  I+FV++L ACSH+GL+ EGK  F+ M  ++ I P +EH
Sbjct: 382 GQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEH 441

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
           +AC+VDLLGR+ +++EA  II+ + ++P  +VWG+LL SCR++ N+++   A+ +L +L 
Sbjct: 442 FACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLA 501

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFH 549
           P  +G YVLL+++YA A  W EV  ++ L++ R ++K+PG S +E+  ++++F++ D +H
Sbjct: 502 PEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYH 561

Query: 550 PQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSK 609
           PQ ++++  L  L  +MKE GYVP+T   L+D++ E+KE  +  HSEKLA+ F ++NT +
Sbjct: 562 PQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQE 621

Query: 610 GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              IRITKNLR+C DCH   K ISK   +EI++RD NRFHHF++G+CSCGDYW
Sbjct: 622 S-PIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 148/336 (44%), Gaps = 47/336 (13%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           +K  K +H+ V    ++    +   L+  YA  G    A  VF  +  +NV+ ++ MI  
Sbjct: 48  IKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRS 107

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y  N +  +AL +FR+M+  S    P+  T   VL+AC+    L  G  +HG + + GLD
Sbjct: 108 YMNNHLYDDALLVFRDMV--SGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLD 165

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             L V + L+ +Y +CG L   +CV D M  +DVVSWNS+++ Y  +     A+ I +EM
Sbjct: 166 LNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREM 225

Query: 383 IYHGVSPSPISFVSVLGACSHAG-----LVEEGKMLFESMRKEHMIRPSVEHYACM---- 433
                 P   +  S+L A ++        VEE   +F ++ K+ ++  +V     M    
Sbjct: 226 DGVRQKPDACTMASLLPAVTNTSSENVLYVEE---MFMNLEKKSLVSWNVMISVYMKNSM 282

Query: 434 ----VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC----------RIHCNVELAE 479
               VDL  +  K E          +EP      S+L +C          RIH  VE  +
Sbjct: 283 PGKSVDLYLQMGKCE----------VEPDAITCASVLRACGDLSALLLGRRIHEYVERKK 332

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
                L E           L D+YA     ++ KRV
Sbjct: 333 LCPNMLLENS---------LIDMYARCGCLEDAKRV 359



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 149/329 (45%), Gaps = 28/329 (8%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N LI    K G L +A  VL    +    ++  ++     +    DAL++   +  +G  
Sbjct: 172 NGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREM--DGVR 229

Query: 113 QDP------FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           Q P       L+  + N  S  ++V     +F    ++++  WN +           + +
Sbjct: 230 QKPDACTMASLLPAVTNTSS--ENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSV 287

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +LY +M      +  D  T   VL+AC       S L  G+ IH  V R      + +  
Sbjct: 288 DLYLQMGKCE--VEPDAITCASVLRAC----GDLSALLLGRRIHEYVERKKLCPNMLLEN 341

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +LIDMYAR GC+  A  VF +M  ++V SW+++I+ Y   G  + A+ LF E  M++   
Sbjct: 342 SLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTE--MQNSGQ 399

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS--ILPVV---SALVTMYARCGKL 341
            P+S+  V++L AC+    L +GK    +  ++  D   I P++   + LV +  R G++
Sbjct: 400 SPDSIAFVAILSACSHSGLLNEGK----FYFKQMTDDYKITPIIEHFACLVDLLGRSGRV 455

Query: 342 ELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
           +    +   M  K +   W +L+SS  V+
Sbjct: 456 DEAYNIIKQMPMKPNERVWGALLSSCRVY 484


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/657 (36%), Positives = 374/657 (56%), Gaps = 56/657 (8%)

Query: 16  PYHTNSIA-HLP-----PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL 69
           PY + + A  LP     PKP         NS++ P SL S ++ ++I  L +  ++ Q L
Sbjct: 4   PYASTTFAASLPFSGPSPKPHP-------NSNSNPKSLKSLDQKQIISLLQRSRHINQVL 56

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
            +                               H+ L  NG  QDPF+V +L+   S   
Sbjct: 57  PI-------------------------------HAQLIRNGHSQDPFMVFELLRSCSKCH 85

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           ++D A  +F  T    +Y++ AL      +G   E ++LY RM      I  D +    +
Sbjct: 86  AIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRM--LHESILPDNYLMASI 143

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM- 248
           LKAC +       L+ G+E+H+  L+ G++    +   ++++Y + G +  A  VF +M 
Sbjct: 144 LKACGSQLA----LREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMP 199

Query: 249 ---AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
                K+ V W+AMI  + RN     ALE FR M  +  ++ PN  T+V VL AC+ L A
Sbjct: 200 EDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGM--QGENVRPNEFTIVCVLSACSQLGA 257

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           LE G+ +H Y+ +  ++  L V +AL+ MY+RCG ++  Q VFD M  RDV+++N++IS 
Sbjct: 258 LEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISG 317

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
             ++G   +AI++F+ M+   + P+ ++FV VL ACSH GLV+ G  +F SM +++ + P
Sbjct: 318 LSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEP 377

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
            +EHY CMVDLLGR  +LEEA  +I  +++ P   + G+LL +C++H N+EL E+ +K L
Sbjct: 378 QIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKEL 437

Query: 486 FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSV 545
            +    ++G YVLL+ VYA++  W E  +V+  ++  G+QK PG S IEV  +++ F+  
Sbjct: 438 EDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLG 497

Query: 546 DEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLI 605
           D  HPQ E+++  L  L+  ++ +GY P+ +VVL D++  EKE  +  HSE+LA+ +GLI
Sbjct: 498 DLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLI 557

Query: 606 NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +T     IR+ KNLR+C DCHS  K I+K   ++I+VRD NRFH+F NG CSCGDYW
Sbjct: 558 STEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/647 (36%), Positives = 360/647 (55%), Gaps = 44/647 (6%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPN-PTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N LI++     N  Q+L +    L   P+ P + T+  L+ + +    L      H  + 
Sbjct: 104 NTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVI 163

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
                 D F++  LI+ Y+    +     VF    RR +  WN++  A    G  EE LE
Sbjct: 164 KVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALE 223

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L++ M      ++ +  T   VL AC   S      + G+ +H+ + R+     + +   
Sbjct: 224 LFQEME--TQNVKPNGITMVGVLSACAKKSD----FEFGRWVHSYIERNRIGESLTLSNA 277

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWS------------------------------ 257
           ++DMY + G V  A  +F +M  K++VSW+                              
Sbjct: 278 MLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAW 337

Query: 258 -AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
            A+I+ Y + G   EALELF E+ + S    P+ VT+VS L ACA L A++ G  IH YI
Sbjct: 338 NALISAYEQCGKPKEALELFHELQL-SKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYI 396

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            ++G+     + ++L+ MY +CG L+    VF  ++++DV  W+++I+   +HG+G  AI
Sbjct: 397 KKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAI 456

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F +M    V P+ ++F ++L ACSH GLVEEG+  F  M   + + P V+HYACMVD+
Sbjct: 457 ALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDI 516

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA  LEEA ++IE + + P   VWG+LLG+C IH NV LAE+A  +L ELEP N G Y
Sbjct: 517 LGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAY 576

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++YA A  WD V  +++L+   GL+K PG S IEV   ++ F+  D  HP  ++++
Sbjct: 577 VLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIY 636

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEE-KERIVLGHSEKLAVAFGLINTSKGETIRI 615
           A L  + A ++  GYVP    +L  ++ E+ KE+ +  HSEKLA+AFGLI+T + + IRI
Sbjct: 637 AKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRI 696

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C DCHS  K +SK  ++EIL+RD  RFHHFR G CSC DYW
Sbjct: 697 VKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 197/406 (48%), Gaps = 43/406 (10%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            +H+ +   G   DPF  ++LI     S F S+D A+ VFD+     +Y WN L RA   
Sbjct: 53  QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYAS 112

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +    + L ++ RM         D+FT+ +++KA       F+    GK  H  V++   
Sbjct: 113 SSNPHQSLLIFLRMLHQSPDF-PDKFTFPFLIKAASELEELFT----GKAFHGMVIKVLL 167

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
              V I+ +LI  YA+ G +     VF  +  ++VVSW++MI  + + G   EALELF+E
Sbjct: 168 GSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQE 227

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M  E+ ++ PN +TMV VL ACA  +  E G+ +H YI R  +   L + +A++ MY +C
Sbjct: 228 M--ETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKC 285

Query: 339 GKLELGQCVFDHMDKRDVVS-------------------------------WNSLISSYG 367
           G +E  + +FD M ++D+VS                               WN+LIS+Y 
Sbjct: 286 GSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYE 345

Query: 368 VHGYGGKAIQIFKEM-IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
             G   +A+++F E+ +     P  ++ VS L AC+  G ++ G  +   ++K+ M + +
Sbjct: 346 QCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGM-KLN 404

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
                 ++D+  +   L++A  +   +       VW +++    +H
Sbjct: 405 CHLTTSLIDMYCKCGDLQKALMVFHSVE-RKDVFVWSAMIAGLAMH 449



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 138/252 (54%), Gaps = 4/252 (1%)

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYA--RFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
           K  K+IHA +LR G        + LI   A   F  + YA  VF Q+   N+ +W+ +I 
Sbjct: 49  KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIR 108

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            YA +    ++L +F  M+ +S D  P+  T   +++A + L  L  GK  HG +++  L
Sbjct: 109 AYASSSNPHQSLLIFLRMLHQSPDF-PDKFTFPFLIKAASELEELFTGKAFHGMVIKVLL 167

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
            S + ++++L+  YA+CG+L LG  VF ++ +RDVVSWNS+I+++   G   +A+++F+E
Sbjct: 168 GSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQE 227

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M    V P+ I+ V VL AC+     E G+ +   + +   I  S+     M+D+  +  
Sbjct: 228 METQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNR-IGESLTLSNAMLDMYTKCG 286

Query: 442 KLEEAAKIIEDL 453
            +E+A ++ + +
Sbjct: 287 SVEDAKRLFDKM 298


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/632 (36%), Positives = 357/632 (56%), Gaps = 39/632 (6%)

Query: 62  QGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKL 121
           Q  +   L +L+    P + T+  LL   T + +L     + +H   +GFD + F+    
Sbjct: 89  QNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAF 148

Query: 122 INVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
           I+++S    VD AR VFD      +  WN +        + ++   L+  M   G  +  
Sbjct: 149 IHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRG--VSP 206

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHA------------------------------ 211
           +  T   +L AC         L+ GK I+                               
Sbjct: 207 NSVTLVLMLSAC----SKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEA 262

Query: 212 -SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAF 270
            SV  +  N  V   T+++  +A  G +  A   F Q+  ++ VSW+AMI  Y R     
Sbjct: 263 QSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFI 322

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
           EAL LFREM M   ++ P+  TMVS+L ACA L ALE G+ +  YI +  + +   V +A
Sbjct: 323 EALALFREMQMS--NVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNA 380

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           L+ MY +CG +   + VF  M  +D  +W ++I    ++G+G +A+ +F  MI   ++P 
Sbjct: 381 LIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPD 440

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
            I+++ VL AC+HAG+VE+G+  F SM  +H I+P+V HY CMVDLLGRA +LEEA ++I
Sbjct: 441 EITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVI 500

Query: 451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWD 510
            ++ ++P   VWGSLLG+CR+H NV+LAE A+K++ ELEP N   YVLL ++YAA   W+
Sbjct: 501 VNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWE 560

Query: 511 EVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKG 570
            +++V++L+  RG++K PG S +E+   +Y FV+ D+ HPQ ++++A L N+  ++ + G
Sbjct: 561 NLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQDLIKAG 620

Query: 571 YVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTK 630
           Y P T  V  DL  E+KE  +  HSEKLA+A+ LI++  G TIRI KNLR+C DCH   K
Sbjct: 621 YSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRMCVDCHHMAK 680

Query: 631 FISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            +S+  N+E++VRD  RFHHFR+G CSC ++W
Sbjct: 681 LVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 189/395 (47%), Gaps = 48/395 (12%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS--VDDARHVFDKTRRRTIYVWNAL 152
           S+     +HSH    G   DP    ++I      +S  +  AR VFD   + T+++WN +
Sbjct: 19  SMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTM 78

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS---LLKHGKEI 209
            +  +     +  + +Y  M    + I+ DRFT+ ++LK       GF+    L++GK +
Sbjct: 79  IKGYSRINHPQNGVSMYLLM--LASNIKPDRFTFPFLLK-------GFTRNMALQYGKVL 129

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
               ++HG++  + +    I M++    V  A  VF       VV+W+ M++ Y R    
Sbjct: 130 LNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQF 189

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            ++  LF EM  E   + PNSVT+V +L AC+ L  LE GK I+ YI    ++  L + +
Sbjct: 190 KKSKMLFIEM--EKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILEN 247

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG---------------------- 367
            L+ M+A CG+++  Q VFD+M  RDV+SW S+++ +                       
Sbjct: 248 VLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVS 307

Query: 368 ----VHGYGG-----KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
               + GY       +A+ +F+EM    V P   + VS+L AC+H G +E G+ +   + 
Sbjct: 308 WTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYID 367

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           K  +   +    A ++D+  +   + +A K+ +++
Sbjct: 368 KNSIKNDTFVGNA-LIDMYFKCGNVGKAKKVFKEM 401



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 150/314 (47%), Gaps = 26/314 (8%)

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G ++YA  VF  +    +  W+ MI  Y+R       + ++  ++M + ++ P+  T   
Sbjct: 55  GKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMY--LLMLASNIKPDRFTFPF 112

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           +L+      AL+ GK++  + ++ G DS L V  A + M++ C  ++L + VFD  D  +
Sbjct: 113 LLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWE 172

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           VV+WN ++S Y       K+  +F EM   GVSP+ ++ V +L ACS    +E GK +++
Sbjct: 173 VVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYK 232

Query: 416 SMR----KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
            +     + ++I  +V     ++D+     +++EA  + ++++       W S++     
Sbjct: 233 YINGGIVERNLILENV-----LIDMFAACGEMDEAQSVFDNMK-NRDVISWTSIVTGFAN 286

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
              ++LA    ++ F+  P          D  +   M D   R+ R +EA  L +    S
Sbjct: 287 IGQIDLA----RKYFDQIPER--------DYVSWTAMIDGYLRMNRFIEALALFREMQMS 334

Query: 532 RIEVKRKMYSFVSV 545
              VK   ++ VS+
Sbjct: 335 --NVKPDEFTMVSI 346


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/612 (36%), Positives = 353/612 (57%), Gaps = 47/612 (7%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           L + C    +  DA  V     D   D+D    T ++  Y     V+ AR VF++   + 
Sbjct: 209 LYMKCDTPEASWDARKV----LDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKF 264

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
             VWNA+      +G   +  EL+RRM      +  D FT+T VL AC  ++ GF    H
Sbjct: 265 DVVWNAMISGYVQSGMCADAFELFRRM--VSEKVPLDEFTFTSVLSAC--ANAGF--FVH 318

Query: 206 GKEIHASVLRHGYNGI----VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA--- 258
           GK +H  ++R   N +    + +   L+ +Y++ G ++ A  +F  M +K+VVSW+    
Sbjct: 319 GKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILS 378

Query: 259 ----------------------------MIACYARNGMAFEALELFREMIMESHDLCPNS 290
                                       M++ Y   G++ +AL+LF +M  E  D+ P  
Sbjct: 379 GYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAE--DVKPCD 436

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T    + AC  L AL+ G+ +H ++++ G ++     +AL+TMYA+CG +   + VF  
Sbjct: 437 YTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLV 496

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M   D VSWN++IS+ G HG+G +A+++F +M+  G+ P  ISF+++L AC+HAGLV+EG
Sbjct: 497 MPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEG 556

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
              FESM+++  I P  +HYA ++DLLGR+ ++ EA  +I+ +  EP P +W ++L  CR
Sbjct: 557 FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCR 616

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
            + ++E    A+ +LF + P + G Y+LL++ Y+AA  W +  RV++L+  RG++K PG 
Sbjct: 617 TNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGC 676

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S IEV  K++ F+  D  HP+ ++++  L  + A M++ GYVP TK VL+D++  EKE I
Sbjct: 677 SWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYI 736

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +  HSEKLAV FGL+    G T+ + KNLR+C DCH+   F+SK   +EI+VRDV RFHH
Sbjct: 737 LFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHH 796

Query: 651 FRNGVCSCGDYW 662
           F++G CSCG+YW
Sbjct: 797 FKDGECSCGNYW 808



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 184/404 (45%), Gaps = 50/404 (12%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT--RR 143
           L L   H  +LS  L   + L  +  D  P   T L+  ++    + DA   FD     R
Sbjct: 65  LTLRLIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPAR 124

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
           R   + NA+  A   A      + ++  + G+G+ +R D +++T ++ A V      +  
Sbjct: 125 RDTVLHNAMMSAFARASLAAPAVSVFHALLGSGS-LRPDDYSFTALISA-VGQMHNLAA- 181

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG---CVMYAGFVFSQMAVKNVVSWSAMI 260
            H  ++H SVL+ G   ++ +   LI +Y +         A  V  +M  K+ ++W+ M+
Sbjct: 182 PHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMV 241

Query: 261 ACYAR-------------------------------NGMAFEALELFREMIMESHDLCPN 289
             Y R                               +GM  +A ELFR M+ E   L  +
Sbjct: 242 VGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPL--D 299

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI----LPVVSALVTMYARCGKLELGQ 345
             T  SVL ACA       GK +HG I+R   + +    LPV +ALVT+Y++ GK+ + +
Sbjct: 300 EFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAK 359

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +FD M+ +DVVSWN+++S Y   G   KA+++FK M Y     + +S++ ++    H G
Sbjct: 360 RIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK----NDLSWMVMVSGYVHGG 415

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
           L E+   LF  MR E  ++P    YA  +   G    L+   ++
Sbjct: 416 LSEDALKLFNQMRAED-VKPCDYTYAGAIAACGELGALKHGRQL 458



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 14/215 (6%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P  +TY   + +C    +L     +H+HL   GF+        L+ +Y+   +V+DAR 
Sbjct: 433 KPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARL 492

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF          WNA+  AL   G G E LEL+ +M     GI  DR ++  +L AC  +
Sbjct: 493 VFLVMPNLDSVSWNAMISALGQHGHGREALELFDQM--VAEGIDPDRISFLTILTACNHA 550

Query: 197 SCGFSLLKHGKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
                L+  G     S+ R  G +        LID+  R G +  A  +   M  +   S
Sbjct: 551 ----GLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPS 606

Query: 256 -WSAMIACYARNG----MAFEALELFREMIMESHD 285
            W A+++    NG     A+ A +LFR  ++  HD
Sbjct: 607 IWEAILSGCRTNGDMEFGAYAADQLFR--MIPQHD 639


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/583 (37%), Positives = 349/583 (59%), Gaps = 10/583 (1%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+  +L +C +  +L    +V   +++  F+ D F+ T LI +Y+   S ++A  VF + 
Sbjct: 113 TFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRM 172

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
           +++ +  W+A+  A    G   E L  +R M   G  I  +R T+  +L      S    
Sbjct: 173 KQKNLITWSAIITAFADHGHCGEALRYFRMMQQEG--ILPNRVTFISLLNGFTTPSG--- 227

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR--FGCVMYAGFVFSQMAVKNVVSWSAM 259
            L+    IH  +  HG +    +   L+++Y R   G +  A  +  +M  + + +W+ +
Sbjct: 228 -LEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVL 286

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I  Y  +G + EALE ++ + +E+  +  + VT +SVL AC +  +L +GKMIH   +  
Sbjct: 287 INGYTLHGRSREALETYQRLQLEA--IPVDKVTFISVLNACTSSTSLAEGKMIHSNAVEC 344

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           GLDS + V +AL  MY++CG +E  + +FD M  R  VSWN ++ +Y  HG   + +++ 
Sbjct: 345 GLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLI 404

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           ++M   GV  + I+FVSVL +CSHAGL+ EG   F S+  +  I    EHY C+VDLLGR
Sbjct: 405 RKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGR 464

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           A KL+EA K I  +  EP    W SLLG+CR+H +++  + A+++L EL+P N+   V+L
Sbjct: 465 AGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVL 524

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           +++Y+    W    +++R + +R ++KVPG S I+VK K++ F   D  HP+  +++  +
Sbjct: 525 SNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKV 584

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
             L   M+E GYVP TK+VL+D+D E+KE ++  HSEKLA+AFGLI+T +  ++ I KNL
Sbjct: 585 EELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNL 644

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+CEDCH+ TKFISK   +EI+VRD +RFHHFR+G CSC DYW
Sbjct: 645 RVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 202/397 (50%), Gaps = 12/397 (3%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+  +L S    ++L     +HS + ++    D F+ T L+N Y+   S+ DAR VFD  
Sbjct: 12  TFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGM 71

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             R++  WN++  A +++ R  E   +++RM   G   R DR T+  +L ACV       
Sbjct: 72  PCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGE--RCDRVTFLSILDACVNPEN--- 126

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L+HGK +  S+    +   + + T LI MYAR      A  VF +M  KN+++WSA+I 
Sbjct: 127 -LQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIIT 185

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            +A +G   EAL  FR  +M+   + PN VT +S+L      + LE+   IH  I   GL
Sbjct: 186 AFADHGHCGEALRYFR--MMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGL 243

Query: 322 DSILPVVSALVTMYARC--GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           D    + +ALV +Y RC  G+L++ + +   MD++ + +WN LI+ Y +HG   +A++ +
Sbjct: 244 DDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETY 303

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           + +    +    ++F+SVL AC+ +  + EGKM+  S   E  +   V     + ++  +
Sbjct: 304 QRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMI-HSNAVECGLDSDVIVKNALTNMYSK 362

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE 476
              +E A +I + + I      W  +L +   H   E
Sbjct: 363 CGSMENARRIFDSMPIRSAVS-WNGMLQAYAQHGESE 398



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 148/296 (50%), Gaps = 12/296 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS--VDDAR 135
           P + T+  LL   T  + L +   +H  +T++G D    +   L+NVY   ++  +D A 
Sbjct: 210 PNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAE 269

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            +  +   + I  WN L    TL GR  E LE Y+R+      I  D+ T+  VL AC +
Sbjct: 270 VILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQ--LEAIPVDKVTFISVLNACTS 327

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           S+     L  GK IH++ +  G +  V +   L +MY++ G +  A  +F  M +++ VS
Sbjct: 328 STS----LAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVS 383

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHG 314
           W+ M+  YA++G + E L+L R+M  E   L  N +T VSVL +C+    + +G +  H 
Sbjct: 384 WNGMLQAYAQHGESEEVLKLIRKMEQEGVKL--NGITFVSVLSSCSHAGLIAEGCQYFHS 441

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM-DKRDVVSWNSLISSYGVH 369
               RG++        LV +  R GKL+  +     M  + ++V+W SL+ +  VH
Sbjct: 442 LGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVH 497



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 166/323 (51%), Gaps = 11/323 (3%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G++++  T+  VL + V        L+ GK IH+ V    ++  V + T L++ Y + G 
Sbjct: 5   GVKANVITFLNVLNSVVDPDA----LRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           +  A  VF  M  ++V +W++MI+ Y+ +  + EA  +F+ M  E  + C + VT +S+L
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEG-ERC-DRVTFLSIL 118

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            AC     L+ GK +   I     +  L V +AL+TMYARC   E    VF  M +++++
Sbjct: 119 DACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLI 178

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL-GACSHAGLVEEGKMLFES 416
           +W+++I+++  HG+ G+A++ F+ M   G+ P+ ++F+S+L G  + +GL E  ++    
Sbjct: 179 TWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHL-- 236

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLE-EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
           +  EH +  +      +V++ GR    E + A++I     E     W  L+    +H   
Sbjct: 237 LITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRS 296

Query: 476 ELAERASKRL-FELEPTNAGNYV 497
             A    +RL  E  P +   ++
Sbjct: 297 REALETYQRLQLEAIPVDKVTFI 319


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/576 (39%), Positives = 337/576 (58%), Gaps = 41/576 (7%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           ++++Y+H   +D A  +F+    R+I  WNA+       G  +  L+ + RM  T + + 
Sbjct: 235 MVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRML-TASSME 293

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D FT T VL AC        +LK GK++H+ +LR G      IM  LI  YA+ G V  
Sbjct: 294 PDEFTVTSVLSAC----ANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVET 349

Query: 241 A----------------------GFV-----------FSQMAVKNVVSWSAMIACYARNG 267
           A                      G+V           F  M  ++V++W+AMI  Y +NG
Sbjct: 350 ARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNG 409

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
              EA+ELFR MI    +  PNS T+ +VL ACA+LA L  GK IH   +R   +  + V
Sbjct: 410 QNDEAMELFRSMIRSGPE--PNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSV 467

Query: 328 VSALVTMYARCGKLELGQCVFDHM-DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
            +A++T+YAR G + L + VFD +  +++ V+W S+I +   HG G +AI +F+EM+  G
Sbjct: 468 SNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVG 527

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           V P  ++++ V  AC+HAG +++GK  +E M  EH I P + HYACMVDLL RA  L EA
Sbjct: 528 VKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEA 587

Query: 447 AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
            + I+ + + P   VWGSLL +CR+  N +LAE A+++L  ++P N+G Y  LA+VY+A 
Sbjct: 588 HEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSAC 647

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
             W++  R+ +L + + ++K  G S   V+ K++ F + D  HPQ + +      +  E+
Sbjct: 648 GRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEI 707

Query: 567 KEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
           K+ G+VP    VL+D+D E KE ++  HSEKLA+AFGLI+T +  T+RI KNLR+C DCH
Sbjct: 708 KKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCH 767

Query: 627 SFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +  KFISK  ++EI+VRD  RFHHFR+G CSC DYW
Sbjct: 768 TAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 190/420 (45%), Gaps = 76/420 (18%)

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           ++ F    L+++Y+    + DAR VF +   R    W  +   L  AGR  + ++ +  M
Sbjct: 95  RNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDM 154

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSC-GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
              G G+   +F  T VL +C A+   G      G+++H+ V++ G +  V +  +++ M
Sbjct: 155 --VGEGLAPSQFMLTNVLSSCAATEARGI-----GRKVHSFVIKLGLSSCVPVANSVLYM 207

Query: 232 YARFGCVMYAGFVFSQMAVKN-------------------------------VVSWSAMI 260
           Y + G    A  VF +M V++                               +VSW+A+I
Sbjct: 208 YGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAII 267

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           A Y +NG+   AL+ F  M+  S  + P+  T+ SVL ACA L  L+ GK +H YILR G
Sbjct: 268 AGYNQNGLDDMALKFFSRMLTAS-SMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTG 326

Query: 321 LDSILPVVSALVTMYARCGKLE----------------------------LGQC-----V 347
           +     +++AL++ YA+ G +E                            LG       V
Sbjct: 327 MPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREV 386

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           FD M+ RDV++W ++I  Y  +G   +A+++F+ MI  G  P+  +  +VL AC+    +
Sbjct: 387 FDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYL 446

Query: 408 EEGKMLF-ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
             GK +   ++R   +   SV     ++ +  R+  +  A ++ + +        W S++
Sbjct: 447 GYGKQIHCRAIRS--LQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMI 504



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 120/259 (46%), Gaps = 15/259 (5%)

Query: 112 DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR 171
           D +    T L+  Y        AR VFD    R +  W A+       G+ +E +EL+R 
Sbjct: 361 DLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRS 420

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           M      IRS     ++ L A +++    + L +GK+IH   +R      V +   +I +
Sbjct: 421 M------IRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITV 474

Query: 232 YARFGCVMYAGFVFSQMAV-KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           YAR G V  A  VF Q+   K  V+W++MI   A++G+  +A+ LF EM+     + P+ 
Sbjct: 475 YARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVG--VKPDR 532

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS---ALVTMYARCGKLELGQCV 347
           VT + V  AC     +++GK  +  +L      I+P +S    +V + AR G L      
Sbjct: 533 VTYIGVFSACTHAGFIDKGKRYYEQMLNE--HGIVPEMSHYACMVDLLARAGLLTEAHEF 590

Query: 348 FDHMD-KRDVVSWNSLISS 365
              M    D V W SL+++
Sbjct: 591 IQRMPVAPDTVVWGSLLAA 609



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 140/313 (44%), Gaps = 68/313 (21%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFG----CVMYAGFVFSQM--AVKNVVSWSAM 259
           G+ IHA  ++ G     ++   L+  YAR G    C   A  +F  +  A +N  +W+++
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103

Query: 260 IACYARNGMAFEALELFREMI-----------------------------MESHDLCPNS 290
           ++ YA++G   +A  +F +M                              M    L P+ 
Sbjct: 104 LSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQ 163

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC------------ 338
             + +VL +CAA  A   G+ +H ++++ GL S +PV ++++ MY +C            
Sbjct: 164 FMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFER 223

Query: 339 -------------------GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
                              G+++L   +F++M++R +VSWN++I+ Y  +G    A++ F
Sbjct: 224 MKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFF 283

Query: 380 KEMIY-HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
             M+    + P   +  SVL AC++  +++ GK +   + +  M   S +    ++    
Sbjct: 284 SRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSS-QIMNALISTYA 342

Query: 439 RANKLEEAAKIIE 451
           ++  +E A +I++
Sbjct: 343 KSGSVETARRIMD 355



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 141/364 (38%), Gaps = 93/364 (25%)

Query: 54  ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           EL +S+ + G            P P  HT   +L +C     L     +H     +  +Q
Sbjct: 416 ELFRSMIRSG------------PEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQ 463

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKT-RRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
              +   +I VY+   SV  AR VFD+   R+    W ++  AL   G GE+ + L+  M
Sbjct: 464 SVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEM 523

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                G++ DR TY  V  AC  +  GF  +  GK  +  +L    +GIV  M+      
Sbjct: 524 --LRVGVKPDRVTYIGVFSAC--THAGF--IDKGKRYYEQMLNE--HGIVPEMS------ 569

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
             + C                     M+   AR G+  EA E  + M      + P++V 
Sbjct: 570 -HYAC---------------------MVDLLARAGLLTEAHEFIQRM-----PVAPDTVV 602

Query: 293 MVSVLQAC-----AALAALEQGKMIHGYILRRGLDSILP----VVSALVTMYARCGKLEL 343
             S+L AC     A LA L   K++          SI P      SAL  +Y+ CG+   
Sbjct: 603 WGSLLAACRVRKNADLAELAAEKLL----------SIDPDNSGAYSALANVYSACGRWND 652

Query: 344 GQCVF----DHMDKRDV-VSWNSLISSYGVHGYGG-------------KAIQIFKEMIYH 385
              ++    D   K++   SW  + S   VH +G              KA ++++E+   
Sbjct: 653 AARIWKLRKDKAVKKETGFSWTHVQSK--VHVFGADDVLHPQRDAICKKAAEMWEEIKKA 710

Query: 386 GVSP 389
           G  P
Sbjct: 711 GFVP 714


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/592 (36%), Positives = 363/592 (61%), Gaps = 42/592 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P Q T+  LL  C +  + +    +H+HL      ++  + T+L+++YS    ++ A+ +
Sbjct: 276 PDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEI 335

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++   R  Y WN++       G  +E L L+++M   G  I+ D F+ + +L +CV+  
Sbjct: 336 FNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNG--IKPDCFSLSSMLSSCVS-- 391

Query: 198 CGFSLLKHGKEIHASVLRHGYN--GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK--NV 253
              S  + G+E+H  ++R+     GI+ ++  L+DMYA+ G + YA  V+ Q   K  N 
Sbjct: 392 --LSDSQKGRELHNFIVRNTMEEEGILQVV--LVDMYAKCGSMDYAWKVYDQTIKKDRNT 447

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
             W++++A YA  G+  E+   F EM+    D+  + +TMV+++                
Sbjct: 448 ALWNSILAGYANKGLKKESFNHFLEML--ESDIEYDVLTMVTIV---------------- 489

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
                    ++L + +ALV MY++CG +   + VFD+M+ +++VSWN++IS Y  HG   
Sbjct: 490 ---------NLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSK 540

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A+ +++EM   G+ P+ ++F+++L ACSH GLVEEG  +F SM++++ I    EHY CM
Sbjct: 541 EALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCM 600

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLLGRA +LE+A + +E + IEP    WG+LLG+CR+H ++++   A++RLFEL+P N 
Sbjct: 601 VDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNP 660

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           G YV+++++YAAA  W EV+ ++++++ +G++K PG S IE+  ++  F +  + HP+ E
Sbjct: 661 GPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTE 720

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLY---DLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           +++  L +L+ + K  GY+P T  +L    D+  EE+E  +L HSE+LA++ GLI+  K 
Sbjct: 721 EIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKK 780

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            TIR+ KNLR+C DCH+ TKFISK   + I+ RD NRFHHF NG CSCGDYW
Sbjct: 781 STIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 196/398 (49%), Gaps = 15/398 (3%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           + P P    Y  L+  C   NS     ++H+ +  NG++ D +L+TK++ +Y+    +DD
Sbjct: 69  VNPLP----YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDD 124

Query: 134 ---ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
              AR +F++   R +  WN +  A        E   ++ RM     G+  D FT+   L
Sbjct: 125 LCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRM--LKIGVCPDNFTFASAL 182

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
           + C A          GK++H+ ++  G+ G   +   LIDMYA+         VF +M  
Sbjct: 183 RVCGA----LRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGE 238

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           +N V+W+++I+  A+ G   +AL LF  M      + P+  T  ++L  CA      QG+
Sbjct: 239 RNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGR 298

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            IH +++R  +   + V + LV MY+ CG+L   + +F+ M +R+  SWNS+I  Y  +G
Sbjct: 299 QIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNG 358

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
              +A+++FK+M  +G+ P   S  S+L +C      ++G+ L   + +  M    +   
Sbjct: 359 ETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ- 417

Query: 431 ACMVDLLGRANKLEEAAKIIED-LRIEPGPKVWGSLLG 467
             +VD+  +   ++ A K+ +  ++ +    +W S+L 
Sbjct: 418 VVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILA 455



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 86/183 (46%), Gaps = 5/183 (2%)

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE---LGQ 345
           N +   S++Q C    + ++GK IH  ++  G +    +++ ++ +YAR G L+     +
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +F+ M +R++ +WN++I +Y       +A  IF  M+  GV P   +F S L  C    
Sbjct: 130 KLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALR 189

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
             + GK +   +        +    A ++D+  + +  E   K+ +++  E     W S+
Sbjct: 190 SRDGGKQVHSKLIACGFKGDTFVGNA-LIDMYAKCDDEESCLKVFDEMG-ERNQVTWNSI 247

Query: 466 LGS 468
           + +
Sbjct: 248 ISA 250


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/619 (36%), Positives = 356/619 (57%), Gaps = 41/619 (6%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           ++S+  +P  +T+  L  SC    +  +   +H+ +   G   D  + T LI++Y+    
Sbjct: 69  MISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGI 128

Query: 131 VDDARHVFDKTRRRTIYV-------------------------------WNALFRALTLA 159
           V+DA  VFD +  R +                                 WNA+       
Sbjct: 129 VEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEI 188

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
           GR +E LEL+  M      ++ D  T   VL  C  S      ++ G++IH+ +  HG+ 
Sbjct: 189 GRYKEALELFNEM--MKMDVKPDESTMATVLSTCTHSGN----VELGRQIHSWIDNHGFG 242

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             + ++  LID+Y++ G +  A  +F  +  K+V+SW+ +I  YA      EAL +F+EM
Sbjct: 243 SNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEM 302

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYAR 337
           +       PN VTM+S+L ACA L A++ G+ IH YI ++  G+ +   + ++L+ MYA+
Sbjct: 303 LKLGE--TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAK 360

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           CG +E    VFD +  + + S N++I  + +HG    A  +   M   G+ P  I+FV +
Sbjct: 361 CGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGL 420

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           L ACSHAGL + G+ +F+SM  ++ I P +EHY CM+DLLGR+   +EA ++I  + +EP
Sbjct: 421 LSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEP 480

Query: 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
              +WGSLL +C+IH N+EL E  +++L ++EP N G+YVLL+++YA +  WD+V RV+ 
Sbjct: 481 DGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRT 540

Query: 518 LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKV 577
           LL  +GL+KVPG S IE+   ++ F+  D+FHPQ ++++ +L  + + + E G+V  T  
Sbjct: 541 LLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSE 600

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           VL +++ E KE  +  HSEKLA+AFGLI+T  G  +RI KNLR+C +CH  TK ISK   
Sbjct: 601 VLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYK 660

Query: 638 KEILVRDVNRFHHFRNGVC 656
           +EI+ RD +RFHHF++G+C
Sbjct: 661 REIIARDRSRFHHFKDGMC 679



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 192/379 (50%), Gaps = 43/379 (11%)

Query: 110 GFDQDPFLVTKLIN---VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           G     + ++KL++   +  +F  +  A  VF   +      WN + R   L+      L
Sbjct: 4   GLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISAL 63

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            LY  M     G+  + +T+ ++ K+C  S       + GK+IHA +L++G    +H+ T
Sbjct: 64  NLYVYM--ISLGLSPNSYTFPFLFKSCAKSKAA----QEGKQIHAQILKYGLTVDLHVHT 117

Query: 227 TLIDMYARFGCV--------------------MYAGF-----------VFSQMAVKNVVS 255
           +LI MYA+ G V                    M  G+           +F ++ +K+VVS
Sbjct: 118 SLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVS 177

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+AMI+ YA  G   EALELF EM+    D+ P+  TM +VL  C     +E G+ IH +
Sbjct: 178 WNAMISGYAEIGRYKEALELFNEMM--KMDVKPDESTMATVLSTCTHSGNVELGRQIHSW 235

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           I   G  S L +V+AL+ +Y++CG++E    +F+ +  +DV+SWN+LI  Y    +  +A
Sbjct: 236 IDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEA 295

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE-HMIRPSVEHYACMV 434
           + +F+EM+  G +P+ ++ +S+L AC+H G ++ G+ +   + K+   I  +      ++
Sbjct: 296 LLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLI 355

Query: 435 DLLGRANKLEEAAKIIEDL 453
           D+  +   +E A ++ + +
Sbjct: 356 DMYAKCGNIEAANQVFDTI 374



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 151/326 (46%), Gaps = 18/326 (5%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G  ++AL++    + ++  P + T   +L +CTH  ++     +HS + +
Sbjct: 179 NAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDN 238

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GF  +  LV  LI++YS    ++ A  +F+  + + +  WN L          +E L +
Sbjct: 239 HGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLV 298

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV---HIM 225
           ++ M   G     +  T   +L AC         +  G+ IH  + +    GI+    + 
Sbjct: 299 FQEMLKLGE--TPNDVTMLSILPACAH----LGAIDIGRWIHVYIDKK-LKGIITNTSLQ 351

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           T+LIDMYA+ G +  A  VF  +  K++ S +AMI  +A +G A  A +L     M+   
Sbjct: 352 TSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSR--MKKDG 409

Query: 286 LCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
           + P+ +T V +L AC+     + G K+     L   ++  L     ++ +  R G  +  
Sbjct: 410 IEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEA 469

Query: 345 QCVFDHMD-KRDVVSWNSLISSYGVH 369
           + + + M  + D V W SL+ +  +H
Sbjct: 470 EELINSMTMEPDGVIWGSLLKACKIH 495


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/581 (40%), Positives = 350/581 (60%), Gaps = 9/581 (1%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
            +E+L L C     L      H+ +   G   D      LIN+YS   SVD AR VFD+ 
Sbjct: 67  VHEILKL-CAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEM 125

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             R++  WN +  +LT  G   E L+L  +M   GT      FT + VL AC A+ C  S
Sbjct: 126 PSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPF--SEFTISSVLCAC-AAKCALS 182

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
                + +HA  ++   +  V + T L+D+YA+ G +  A  VF  M  ++VV+WS+M A
Sbjct: 183 ---ECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAA 239

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            Y +N M  +AL LFR+       L  +   M SV+ ACA LAA+ +GK ++  + + G 
Sbjct: 240 GYVQNEMYEQALALFRKAW--ETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGF 297

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
            S + V S+L+ MYA+CG +E    VF  ++KR+VV WN++IS    H    + + +F++
Sbjct: 298 CSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEK 357

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   G+SP+ ++FVSVL AC H GLV++G+  F+ M KEH + P+V HY+CMVD L RA 
Sbjct: 358 MQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAG 417

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
           ++ EA  +I  L       +WGSLL SCR H N+ELAE A+K+LF++EP N+GNY+LL++
Sbjct: 418 QIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSN 477

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YAA   WDEV ++++LL+   ++K  G+S IE+K K++ F+  +  HP+  ++++ L  
Sbjct: 478 MYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNE 537

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           +  E+++ GY  +T+  L+ +    K+ ++  HSEKLA   GL+       IRI KNLR+
Sbjct: 538 VMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRI 597

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCHSF K  SKF  ++++VRD NRFHHF+NG CSCGD+W
Sbjct: 598 CGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 164/326 (50%), Gaps = 18/326 (5%)

Query: 53  NELIQSLCKQGNLRQALDVL---SIEPNP-TQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I SL + G   +ALD+L     E  P ++ T   +L +C    +LS+   +H+    
Sbjct: 134 NTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIK 193

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              D + F+ T L++VY+    + DA  VF+    R++  W+++          E+ L L
Sbjct: 194 AAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALAL 253

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +R+     TG++ D+F  + V+ AC     G + +  GK+++A + + G+   + + ++L
Sbjct: 254 FRK--AWETGLKHDQFLMSSVICACA----GLAAMIEGKQVNALLSKSGFCSNIFVASSL 307

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMYA+ G +  +  VF  +  +NVV W+AMI+  +R+  + E + LF +  M+   L P
Sbjct: 308 IDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEK--MQQMGLSP 365

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALVTMYARCGKLELGQ 345
           N VT VSVL AC  +  +++G+     + +     + P V   S +V   +R G++    
Sbjct: 366 NDVTFVSVLSACGHMGLVKKGQKYFDLMTKE--HHLAPNVFHYSCMVDTLSRAGQIFEAY 423

Query: 346 CVFDHMDKRDVVS-WNSLISSYGVHG 370
            +   +      S W SL++S   HG
Sbjct: 424 DLISKLPFNASASMWGSLLASCRTHG 449


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/616 (38%), Positives = 368/616 (59%), Gaps = 15/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS-IEPN---PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I S  + G  ++A+D+   + P+   P + T+  +  + +    + +    H     
Sbjct: 145 NSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVV 204

Query: 109 NGFD-QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            G    + F+ + L+++Y+ F  + DAR V D+   + + ++ AL    +  G   E L+
Sbjct: 205 LGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQ 264

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           ++R M  T  GI ++ +T + VL  C         L  G+ IH  +++ G    V   T+
Sbjct: 265 VFRNM--TKKGIEANEYTLSSVLVCC----GNLEDLTSGRLIHGLIVKAGLESAVASQTS 318

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+ MY R G V  +  VF Q    N V+W+++I    +NG    AL  FR+M+  S  + 
Sbjct: 319 LLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSS--IT 376

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           PNS T+ SVL+AC++LA LEQGK IH  +++ GLD    V +AL+  Y +CG  E+ + V
Sbjct: 377 PNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSV 436

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F+ + + DVVS NS+I SY  +G+G +A+Q+F  M   G+ P+ ++++ VL AC++AGL+
Sbjct: 437 FNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLL 496

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           EEG  +F S R    I  + +HYACMVDLLGRA +L+EA  +I  + I     +W +LL 
Sbjct: 497 EEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNISD-VVIWRTLLS 555

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           +CRIH +VE+A+R   R+ +L P + G +VLL+++YA+   W +V  +K  +    L+K 
Sbjct: 556 ACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKN 615

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           P  S ++V+R++++F++ D  HP F  +   L  L  ++KE GYVP T+ VL DLD E+K
Sbjct: 616 PAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKK 675

Query: 588 ERIVLGHSEKLAVAFGLINTS-KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
            R +  HSEKLAVAF L  ++ K  TIRI KNLR+C DCH++ KF+SK   ++I+ RDV 
Sbjct: 676 IRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVK 735

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHFRNG+CSCGDYW
Sbjct: 736 RFHHFRNGLCSCGDYW 751



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 173/632 (27%), Positives = 274/632 (43%), Gaps = 85/632 (13%)

Query: 9   TPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNEL---IQSLC--KQG 63
           TPQ LR    +       P P S+    +        ++  R +N +    +SL    Q 
Sbjct: 6   TPQRLRREQES----RFSPAPVSMFIADTQADKLHGNNVLEREENRVSAFFKSLSHFSQS 61

Query: 64  NLRQALDVLSI-EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLI 122
           N++  +  L I E   +   Y  L+  C    S++D   + SH    GF     L  KLI
Sbjct: 62  NIK--IRKLCITETIQSTKLYSSLIQQCIGIKSITDITKIQSHALKRGFHHS--LGNKLI 117

Query: 123 NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSD 182
           + Y    SV  AR VFD+   R I  WN++  +    GR +E +++Y+RM     GI  D
Sbjct: 118 DAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRM--VPDGILPD 175

Query: 183 RFTYTYVLKACVASSCGFSLLKHGKEIHAS--VLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            FT++ V KA         L+  G+  H    VL  G +  V + + L+DMYA+FG +  
Sbjct: 176 EFTFSSVFKAF----SDLGLVHEGQRAHGQSVVLGVGVSN-VFVGSALVDMYAKFGKMRD 230

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  V  Q+  K+VV ++A+I  Y+ +G   E+L++FR M  +   +  N  T+ SVL  C
Sbjct: 231 ARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKG--IEANEYTLSSVLVCC 288

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
             L  L  G++IHG I++ GL+S +   ++L+TMY RCG ++    VF      + V+W 
Sbjct: 289 GNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWT 348

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           S+I     +G    A+  F++M+   ++P+  +  SVL ACS   ++E+GK +   + K 
Sbjct: 349 SVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKF 408

Query: 421 HMIRPSVEHY--ACMVDLLGRANKLEEAAKI----------------------------- 449
            +    ++ Y  A ++D  G+    E A  +                             
Sbjct: 409 GL---DIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEAL 465

Query: 450 -----IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
                ++D  +EP    W  +L +C    N  L E     +F     N+GN  L  D YA
Sbjct: 466 QLFSGMKDTGLEPNNVTWLGVLSACN---NAGLLEEGC-HIFS-SARNSGNIELTKDHYA 520

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS--------------FVSVDEFHP 550
              M D + R  RL EA  L      S + + R + S                 V +  P
Sbjct: 521 C--MVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAP 578

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
           +    H LL NL A       V + K  + ++
Sbjct: 579 EDGGTHVLLSNLYASTGNWSKVIEMKSAMREM 610


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/571 (40%), Positives = 334/571 (58%), Gaps = 13/571 (2%)

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRA 155
           + +   +HS L+  GF +       L+++Y+    +D+AR +F+    RT+  W+A+  A
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
             L GRG+E L L+ RM   G  +  +  T+T V  AC         L+ G+EIHA  + 
Sbjct: 61  YALHGRGQEALLLFHRMRNDGR-VEPNAMTFTGVFNACGV----IEDLEQGREIHALAMA 115

Query: 216 HG----YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
            G     N I+     L++MY R G +  A  VF  M   +  SW++MI     N    E
Sbjct: 116 SGELKSSNAILE--NALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLE 173

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           ALELF  M +E   + P SVT+ SVL ACA   AL+ GK IH  +   G  S +   +AL
Sbjct: 174 ALELFHRMNLEG--IPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTAL 231

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MYA+CG LE    VF  M+ R+ VSW ++I++   HG G +A+++FKEM   G+    
Sbjct: 232 LDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADA 291

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
            +F+ VL ACSHAGL++E    F SM +++ I P+  HY   +D +GRA +L++A ++I 
Sbjct: 292 TTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIH 351

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
            +   P    W +LL +CRIH   E A + ++ L +L P ++  Y LL +VYAA   + +
Sbjct: 352 SMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGD 411

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGY 571
             RV++ +  RGL+KVPG+S IEVK K++ FV+ D  HP  +++   L  L   M+E GY
Sbjct: 412 QMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGY 471

Query: 572 VPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKF 631
           VP TK VL+ ++ EEKE+++  HSEKLA+AFGLI T  G  + I KNLR+C DCH+ TK 
Sbjct: 472 VPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKV 531

Query: 632 ISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I+K   + I+VRD +RFHHF +G CSC DYW
Sbjct: 532 IAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PT  T   +L +C    +L     +HS L  +GF       T L+++Y+   S++ +  V
Sbjct: 188 PTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKV 247

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           F     R    W A+  AL   G+G+E LEL++ MN    G+ +D  T+  VL+AC
Sbjct: 248 FTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMN--LEGMVADATTFICVLRAC 301


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/561 (41%), Positives = 339/561 (60%), Gaps = 15/561 (2%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH ++   GF  +  +   LI ++S     D+A  VF K   + +  W A+       G 
Sbjct: 318 VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGL 377

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            E+ +E Y  M   G  +  D  T   VL AC     G  LL  G  +H    R G    
Sbjct: 378 PEKAVETYTIMEHEG--VVPDEITIASVLSACA----GLGLLDKGIMLHEFADRTGLTSY 431

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V +  +LIDMY++  C+  A  VF ++  KNV+SW+++I     N  +FEAL  F++MI+
Sbjct: 432 VIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL 491

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARCG 339
               L PNSVT+VSVL ACA + AL  GK IH + LR GL  D  LP  +AL+ MY RCG
Sbjct: 492 S---LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLP--NALLDMYVRCG 546

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           ++E     F+  +K DV SWN L++ Y   G GG A+++F +MI   V+P  I+F S+L 
Sbjct: 547 RMEPAWNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLC 605

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           ACS +G+V +G   FESM  +  I P+++HYA +VDLLGRA +LE+A + I+ + I+P P
Sbjct: 606 ACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDP 665

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
            +WG+LL +CRI+ NVEL E A++ +FE++  + G Y+LL ++YA +  WDEV RV++++
Sbjct: 666 AIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIM 725

Query: 520 EARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579
               L   PG S +EV  ++++F++ D+FHPQ ++++A+L     +M+  G         
Sbjct: 726 RENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRR 785

Query: 580 YDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKE 639
            D+DA + E I  GHSE+LA+AFGLINT  G  I +TKNL +CE+CH+  KFISK   + 
Sbjct: 786 DDIDASKAE-IFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRG 844

Query: 640 ILVRDVNRFHHFRNGVCSCGD 660
           I VRD  +FHHF++GVCSCGD
Sbjct: 845 ISVRDTEQFHHFKDGVCSCGD 865



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 207/380 (54%), Gaps = 12/380 (3%)

Query: 40  SSTTPTSLSSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNS 95
           S   P+S++++N N LI  LC +G+L +AL     +  ++ +  + TY  LL  C    +
Sbjct: 50  SVLNPSSITAQNPNSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRA 109

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRA 155
            S+   VHS+++         L   L++++  F  + +A +VF K   R ++ WN L   
Sbjct: 110 ASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGG 169

Query: 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
              AG  +E L LY RM     GIR D +T+  VL+ C     G   L  G+E+H  V+R
Sbjct: 170 YAKAGYFDEALNLYHRM--LWVGIRPDVYTFPCVLRTC----GGLPDLARGREVHLHVIR 223

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
           +G+   V ++  LI MY + G +  A  VF +M  ++ +SW+AMI+ Y  N +  E L L
Sbjct: 224 YGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRL 283

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F   +M    + P+ +TM SV+ AC AL     G+ +HGY+++ G  + + V ++L+ M+
Sbjct: 284 F--FMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMH 341

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           +  G  +  + VF  M+ +D+VSW ++IS Y  +G   KA++ +  M + GV P  I+  
Sbjct: 342 SSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIA 401

Query: 396 SVLGACSHAGLVEEGKMLFE 415
           SVL AC+  GL+++G ML E
Sbjct: 402 SVLSACAGLGLLDKGIMLHE 421



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 173/421 (41%), Gaps = 70/421 (16%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    K G   +A++  +I  +    P + T   +L +C     L   + +H      G
Sbjct: 368 MISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTG 427

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
                 +   LI++YS    +D A  VF +   + +  W ++   L L  R  E L  ++
Sbjct: 428 LTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQ 487

Query: 171 RMNGTGTGIRSDRFTYTYVLKACV---ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           +M      ++ +  T   VL AC    A SC       GKEIHA  LR G      +   
Sbjct: 488 QMI---LSLKPNSVTLVSVLSACARIGALSC-------GKEIHAHALRTGLGFDGFLPNA 537

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+DMY R G +  A   F+    K+V SW+ ++  YA+ G    A+ELF +MI    D+ 
Sbjct: 538 LLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMI--ESDVN 594

Query: 288 PNSVTMVSVLQACAALAALEQG-----KMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
           P+ +T  S+L AC+    +  G      M H + +   L     VV  L     R G+LE
Sbjct: 595 PDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLL----GRAGRLE 650

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
                                           A +  K+M    + P P  + ++L AC 
Sbjct: 651 -------------------------------DAYEFIKKM---PIDPDPAIWGALLNACR 676

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR-----IEP 457
               VE G++  + + +  M   SV +Y  + +L   + K +E A++ + +R     ++P
Sbjct: 677 IYQNVELGELAAQHIFE--MDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDP 734

Query: 458 G 458
           G
Sbjct: 735 G 735


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/531 (40%), Positives = 330/531 (62%), Gaps = 10/531 (1%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR +FD+  +   ++WN + +     G  ++ + +Y +M   G  +R D FT+ +V+KAC
Sbjct: 88  ARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLG--VRPDPFTFPFVIKAC 145

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                  + L  G  +H  V++HG   +  + T L+ MY +FG +  A F+F  M  +++
Sbjct: 146 AE----LAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDL 201

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+A+IA   + G + +AL+ FREM M    + P+SVT+VS L AC  L  LE G+ I+
Sbjct: 202 VAWNALIAVCVQTGFSSKALQSFREMGMAG--IKPDSVTIVSALSACGHLGCLETGEEIY 259

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
            +    G+DS + V +A + M A+CG ++    +FD M +R+V+SW+++I  Y V+G   
Sbjct: 260 EFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESE 319

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK--EHMIRPSVEHYA 431
           KA+ +F  M   GV P+ ++F++VL ACSH G V EG   F  M +  +  I+P  EHYA
Sbjct: 320 KALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYA 379

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           CMVDLLGR+  LEEA   I+ + IE  P +WG+LLG+C IH N++L +  +  LFEL P 
Sbjct: 380 CMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPE 439

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
            A  +VLL+++YAAA  W  V++V++ ++ +G +KV   S +E   +++     D+ HPQ
Sbjct: 440 IASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQ 499

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
              + A L +L  +MK  GY+P+T  V +D++ EEKE  +  HSEKLA+AF LIN S   
Sbjct: 500 SASILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKF 559

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            IR+ KNLR+C DCH+F K +S+   +EI++RD NRFHHF+NG+CSC D+W
Sbjct: 560 PIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 2/116 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T    L +C H   L     ++    + G D +  +    +++ +    +D A ++
Sbjct: 234 PDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNL 293

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           FD+  +R +  W+ +     + G  E+ L L+ RM     G++ +  T+  VL AC
Sbjct: 294 FDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMK--NQGVQPNYVTFLAVLSAC 347


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/608 (35%), Positives = 362/608 (59%), Gaps = 10/608 (1%)

Query: 55   LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
            L+ +L +   +   + +  IEPN  Q TY  +L +C+   ++     +H+ +   GF  +
Sbjct: 450  LLDNLNESFKIFTQMQMEGIEPN--QFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFN 507

Query: 115  PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             ++ + LI++Y+    +D A  +F + + + +  W A+        +  E L L++ M  
Sbjct: 508  VYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQD 567

Query: 175  TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
             G  I SD   +   + AC     G   L  G++IHA     GY+  + +   L+ +YAR
Sbjct: 568  QG--IHSDNIGFASAISACA----GIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYAR 621

Query: 235  FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
             G V  A F F ++  K+ +SW+++I+ +A++G   EAL LF +M     ++  NS T  
Sbjct: 622  CGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEI--NSFTFG 679

Query: 295  SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
              + A A +A ++ GK IH  I++ G DS   V + L+T+YA+CG ++  +  F  M ++
Sbjct: 680  PAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEK 739

Query: 355  DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
            + +SWN++++ Y  HG+G KA+ +F++M   GV P+ ++FV VL ACSH GLV+EG   F
Sbjct: 740  NEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYF 799

Query: 415  ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
            +SMR+ H + P  EHYAC+VDLLGR+  L  A + +E++ I+P   V  +LL +C +H N
Sbjct: 800  QSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKN 859

Query: 475  VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
            +++ E A+  L ELEP ++  YVLL+++YA    W    R +++++ RG++K PGRS IE
Sbjct: 860  IDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIE 919

Query: 535  VKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGH 594
            V   +++F + D+ HP  ++++  L +L+    E GY+PQT  +L D +  +K    + H
Sbjct: 920  VNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIH 979

Query: 595  SEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
            SEKLA+AFGL++ S    I + KNLR+C DCH++ K++SK +++ I+VRD  RFHHF+ G
Sbjct: 980  SEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGG 1039

Query: 655  VCSCGDYW 662
            +CSC DYW
Sbjct: 1040 ICSCKDYW 1047



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 148/527 (28%), Positives = 243/527 (46%), Gaps = 63/527 (11%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
            TY  LL  C      SD   +H  +   GF  +  L  +L+++Y  F  +D A  VFD+
Sbjct: 69  QTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDE 128

Query: 141 TRRRTIYVWNAL---FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
              R +  WN +   F A  +AGR   VL L+RRM      ++ D  TY  VL+ C    
Sbjct: 129 MPVRPLSCWNKVLHRFVAGKMAGR---VLGLFRRM--LQEKVKPDERTYAGVLRGCGGGD 183

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
             F  ++   +IHA  + HGY   + +   LID+Y + G +  A  VF  +  ++ VSW 
Sbjct: 184 VPFHCVE---KIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWV 240

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AM++  +++G   EA+ LF +M   +  + P      SVL AC  +   + G+ +HG +L
Sbjct: 241 AMLSGLSQSGCEEEAVLLFCQM--HTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVL 298

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           ++G      V +ALVT+Y+R G     + VF+ M +RD VS+NSLIS     GY  KA++
Sbjct: 299 KQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALE 358

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAG--------------------LVEEGKML---- 413
           +FK+M    + P  ++  S+L ACS  G                    ++ EG +L    
Sbjct: 359 LFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYV 418

Query: 414 -FESMRKEHMIRPSVEH-----YACMVDLLGRANKLEEAAKIIEDLR---IEPGPKVWGS 464
               ++  H    S E      +  M+   G  + L E+ KI   ++   IEP    + S
Sbjct: 419 KCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPS 478

Query: 465 LLGSCRIHCNVELAERASKRLFELE-PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           +L +C     V+L E+   ++ +     N     +L D+YA     D   ++ R L+   
Sbjct: 479 ILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK--- 535

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKG 570
                       ++ + S+ ++   + Q E+  A  +NL  EM+++G
Sbjct: 536 ------------EKDVVSWTAMIAGYAQHEKF-AEALNLFKEMQDQG 569



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 210/403 (52%), Gaps = 11/403 (2%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDAL-NVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
           +L  +  P + TY  +L  C   +     +  +H+    +G++   F+   LI++Y    
Sbjct: 160 MLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNG 219

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
            ++ A+ VFD  ++R    W A+   L+ +G  EE + L+ +M+ +G  +    + ++ V
Sbjct: 220 FLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSG--VYPTPYIFSSV 277

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           L AC          K G+++H  VL+ G++   ++   L+ +Y+R G  + A  VF+ M 
Sbjct: 278 LSACTK----VEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAML 333

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            ++ VS++++I+  ++ G + +ALELF++M ++   L P+ VT+ S+L AC+++ AL  G
Sbjct: 334 QRDEVSYNSLISGLSQQGYSDKALELFKKMCLDC--LKPDCVTVASLLSACSSVGALLVG 391

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           K  H Y ++ G+ S + +  AL+ +Y +C  ++     F   +  +VV WN ++ +YG+ 
Sbjct: 392 KQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLL 451

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
               ++ +IF +M   G+ P+  ++ S+L  CS    V+ G+ +   + K    + +V  
Sbjct: 452 DNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGF-QFNVYV 510

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            + ++D+  +  KL+ A KI   L+ E     W +++     H
Sbjct: 511 SSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQH 552



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 134/276 (48%), Gaps = 12/276 (4%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G+R++  TY ++L  C++S         G ++H  +L+ G+   V +   L+D+Y  FG 
Sbjct: 63  GVRANSQTYLWLLDGCLSS----GWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGD 118

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           +  A  VF +M V+ +  W+ ++  +    MA   L LFR M+ E   + P+  T   VL
Sbjct: 119 LDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEK--VKPDERTYAGVL 176

Query: 298 QACAAL-AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           + C          + IH   +  G ++ L V + L+ +Y + G L   + VFD + KRD 
Sbjct: 177 RGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDS 236

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           VSW +++S     G   +A+ +F +M   GV P+P  F SVL AC+     + G+ L   
Sbjct: 237 VSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGL 296

Query: 417 MRKEHMIRPSVEHYAC--MVDLLGRANKLEEAAKII 450
           + K+     S+E Y C  +V L  R      A ++ 
Sbjct: 297 VLKQGF---SLETYVCNALVTLYSRLGNFIPAEQVF 329



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 12/181 (6%)

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           +ME   +  NS T + +L  C +      G  +HG IL+ G  + + +   L+ +Y   G
Sbjct: 58  LMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFG 117

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            L+    VFD M  R +  WN ++  +      G+ + +F+ M+   V P   ++  VL 
Sbjct: 118 DLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLR 177

Query: 400 ACSHAGLVEEGKMLFESMRKEH--MIRPSVEH--YAC--MVDLLGRANKLEEAAKIIEDL 453
            C        G + F  + K H   I    E+  + C  ++DL  +   L  A K+ + L
Sbjct: 178 GCG------GGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGL 231

Query: 454 R 454
           +
Sbjct: 232 Q 232


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/583 (36%), Positives = 357/583 (61%), Gaps = 10/583 (1%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           TY LLL  C    +L +   VHS L  +G+  D  +   LI +Y     + +AR VFD+ 
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 142 RRRTIYV--WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           + +   V  WN +  A T  G G+E L L++ M+  G  + +++ T    + AC +    
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEG--VIANQVTLINAIDACAS---- 139

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
               + G+ +HA  +         + T+L++M+ +   V  A  VF  +  KN+V+W+ M
Sbjct: 140 LPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNM 199

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           +A Y++N    +A+++FR M +E   + P++VT ++++ ACAALAA  +G+M+H  I   
Sbjct: 200 VAVYSQNWQCKKAIQVFRFMDLEG--VQPDAVTFLTIIDACAALAAHTEGRMVHDDITAS 257

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           G+   + + +A++  Y +CG+L+  + +FD + K++ V+W++++++Y  +GY  +AI+++
Sbjct: 258 GIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELY 317

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
            EM+  G+  + I+F+ +L ACSHAG   +G   F SM ++  + P  EHY  ++DLLGR
Sbjct: 318 HEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGR 377

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           + +L+ +  +I  +  EP    W +LLG+CR+H +V+   R ++ ++EL+P ++G Y+LL
Sbjct: 378 SGQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILL 437

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           +++Y++    DE +R ++ +  RG+ K PG S IEVK +++ F++  + HPQ  ++HA +
Sbjct: 438 SNLYSSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEI 497

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
             L A +KE GYV   + VL D++ EEKE+++  HSE+LA+AFGLI+T  G  + I KNL
Sbjct: 498 ERLKARVKEAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNL 557

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCH+  K ISK   ++I+VRD  RFHHF NG CSCGDYW
Sbjct: 558 RVCFDCHAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 11/197 (5%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
           +D+  ++P+    T+  ++ +C    + ++   VH  +T +G   D  L T +++ Y   
Sbjct: 219 MDLEGVQPDAV--TFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKC 276

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
             +D+AR +FD   ++    W+A+  A    G   E +ELY  M     G+  +  T+  
Sbjct: 277 GRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEM--VQGGLEVNGITFLG 334

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
           +L AC  S  G S+   G +   S++R  G   +      LID+  R G +  +  + + 
Sbjct: 335 LLFAC--SHAGRSM--DGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINS 390

Query: 248 MAVK-NVVSWSAMI-AC 262
           M  + +  +W A++ AC
Sbjct: 391 MPYEPDSSAWLALLGAC 407


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/586 (36%), Positives = 364/586 (62%), Gaps = 8/586 (1%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           NP   T+  +L +C    + S   +VH  +    ++ D ++   L+++Y+ F   +D   
Sbjct: 139 NPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLR 198

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF++  +  +  W+ +      + +  E +EL+ +M      +  ++FT+  VL++C + 
Sbjct: 199 VFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAF--VLPNQFTFASVLQSCAS- 255

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+ GK++H  VL+ G +G V +   L+D+YA+ G +  +  +F ++  +N V+W
Sbjct: 256 ---IENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTW 312

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + MI  Y ++G   +AL L++ M+     +  + VT  SVL+ACA+LAA+E G  IH   
Sbjct: 313 NTMIVGYVQSGDGDKALSLYKNML--ECQVQASEVTYSSVLRACASLAAMELGTQIHSLS 370

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           L+   D  + V +AL+ MYA+CG ++  + VFD + +RD +SWN++IS Y +HG  G+A+
Sbjct: 371 LKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEAL 430

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           + F+ M      P+ ++FVS+L ACS+AGL++ G+  F+SM +++ I P +EHY CMV L
Sbjct: 431 KAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWL 490

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGR+  L++A K+IE++ +EP  KVW +LLG+C IH +V+L   +++++ +++P +   +
Sbjct: 491 LGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATH 550

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++YA    W+ V  V++ ++ +G++K PG S IE +  ++ F   D  HP  + + 
Sbjct: 551 VLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMIS 610

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
            +L  L+ + ++ GYVP    VL D++ +EK+R +  HSE+LA+AFGLI T     IRI 
Sbjct: 611 GMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRIL 670

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCHS  K ISK   ++I++RD+NRFHHF++G+CSCGDYW
Sbjct: 671 KNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/441 (29%), Positives = 222/441 (50%), Gaps = 18/441 (4%)

Query: 55  LIQSLCKQGNLRQALDVLSI------EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           LIQ   +   L + +D+ S       E NP   T  L LL       L  A ++H+ +  
Sbjct: 12  LIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAEL--AYSLHACIYK 69

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G + + F+ T LI+ Y+   SV+ AR  FD    + +  W  +        R ++ L+L
Sbjct: 70  LGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQL 129

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M     G   + FT+  VLKAC+    G      GK +H  VL+  Y   +++   L
Sbjct: 130 FAEMR--MVGFNPNHFTFAGVLKACI----GLEAFSVGKSVHGCVLKTCYEMDLYVGVGL 183

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +D+Y +FG       VF +M   +V+ WS MI+ YA++  + EA+ELF +  M    + P
Sbjct: 184 LDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQ--MRRAFVLP 241

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N  T  SVLQ+CA++  L+ GK +H ++L+ GLD  + V +AL+ +YA+CG+L+    +F
Sbjct: 242 NQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLF 301

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             +  R+ V+WN++I  Y   G G KA+ ++K M+   V  S +++ SVL AC+    +E
Sbjct: 302 MELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAME 361

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            G  +  S+  + +    V     ++D+  +   ++  A+++ D+  E     W +++  
Sbjct: 362 LGTQI-HSLSLKTIYDKDVVVGNALIDMYAKCGSIKN-ARLVFDMLSERDEISWNAMISG 419

Query: 469 CRIHCNVELAERASKRLFELE 489
             +H  V  A +A + + E E
Sbjct: 420 YSMHGLVGEALKAFQMMQETE 440



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 139/332 (41%), Gaps = 48/332 (14%)

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M  +N VS+  +I  Y ++    E ++LF  +  E H+L P   T  ++L+   ++   E
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFT--TILKLLVSVECAE 58

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
               +H  I + G +S   V +AL+  YA CG +   +  FD +  +D+VSW  +++ Y 
Sbjct: 59  LAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYA 118

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK-------- 419
            +     ++Q+F EM   G +P+  +F  VL AC        GK +   + K        
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLY 178

Query: 420 ----------------------EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR--- 454
                                 E M +  V  ++ M+    ++N+  EA ++   +R   
Sbjct: 179 VGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAF 238

Query: 455 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVL---LADVYAAADMWDE 511
           + P    + S+L SC    N++L ++    + ++     GN  +   L DVYA     D 
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLD--GNVFVSNALMDVYAKCGRLDN 296

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
             ++          ++P R+ +     +  +V
Sbjct: 297 SMKL--------FMELPNRNEVTWNTMIVGYV 320


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/588 (38%), Positives = 345/588 (58%), Gaps = 17/588 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+  +L +C H   LS+   +H+ +  + F  DPF+ T L+++Y+   S+  A +V
Sbjct: 198 PNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENV 257

Query: 138 FDKTRRRTIYVWNAL---FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           FD+   R +  WN++   F    L GR    + ++R +   G     D+ + + VL AC 
Sbjct: 258 FDEMPHRNLVSWNSMIVGFVKNKLYGRA---IGVFREVLSLG----PDQVSISSVLSACA 310

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
               G   L  GK++H S+++ G  G+V++  +L+DMY + G    A  +F     ++VV
Sbjct: 311 ----GLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVV 366

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           +W+ MI    R     +A   F+ MI E  +  P+  +  S+  A A++AAL QG MIH 
Sbjct: 367 TWNVMIMGCFRCRNFEQACTYFQAMIREGVE--PDEASYSSLFHASASIAALTQGTMIHS 424

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
           ++L+ G      + S+LVTMY +CG +     VF    + +VV W ++I+ +  HG   +
Sbjct: 425 HVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANE 484

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           AI++F+EM+  GV P  I+FVSVL ACSH G +++G   F SM   H I+P +EHYACMV
Sbjct: 485 AIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMV 544

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           DLLGR  +LEEA + IE +  EP   VWG+LLG+C  H NVE+    ++RLF+LEP N G
Sbjct: 545 DLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPG 604

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
           NY+LL+++Y    M +E   V+RL+   G++K  G S I+VK + + F + D  H + ++
Sbjct: 605 NYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQE 664

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
           ++ +L  L   +K +GYV +T+     ++  E E+ +  HSEKLA+AFGL+    G  +R
Sbjct: 665 IYGMLQKLKELIKRRGYVAETQFATNSVEGSE-EQSLWCHSEKLALAFGLLVLPPGSPVR 723

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I KNLR C DCH+  KF S+   +EI+VRD+NRFH F NG CSC DYW
Sbjct: 724 IKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 144/272 (52%), Gaps = 11/272 (4%)

Query: 183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG 242
           +F+    LK  + ++     LKH  +IH+ ++    +  +  + TL+ +YA+ G + +  
Sbjct: 93  QFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTL 152

Query: 243 FVFSQM--AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
            +F+       NVV+W+ +I   +R+   F+AL  F    M +  + PN  T  ++L AC
Sbjct: 153 LLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNR--MRTTGIYPNHFTFSAILPAC 210

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           A  A L +G+ IH  I +    +   V +AL+ MYA+CG + L + VFD M  R++VSWN
Sbjct: 211 AHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWN 270

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE--GKMLFESMR 418
           S+I  +  +   G+AI +F+E++  G  P  +S  SVL AC  AGLVE   GK +  S+ 
Sbjct: 271 SMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSAC--AGLVELDFGKQVHGSIV 326

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
           K  ++   V     +VD+  +    E+A K+ 
Sbjct: 327 KRGLV-GLVYVKNSLVDMYCKCGLFEDATKLF 357



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM--DK 353
           +L   A L +L+    IH  ++     + L  ++ L+ +YA+CG +     +F+      
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPS 162

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
            +VV+W +LI+         +A+  F  M   G+ P+  +F ++L AC+HA L+ EG+ +
Sbjct: 163 TNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQI 222

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
              + K   +       A ++D+  +   +  A  + +++
Sbjct: 223 HALIHKHCFLNDPFVATA-LLDMYAKCGSMLLAENVFDEM 261


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/691 (34%), Positives = 365/691 (52%), Gaps = 78/691 (11%)

Query: 42  TTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALN 101
           + PT++ S     LI+     G+  +A  +    P P   T   L+ + T H   ++A+ 
Sbjct: 91  SLPTNIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIK 150

Query: 102 VHSHLTDNGFD-----------------------------------QDPFLVTKLINVYS 126
           ++S L + G                                      D F+   LI+ Y 
Sbjct: 151 IYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYG 210

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
               V+ AR VFD    R +  W +L       G   + ++++R M  +G  ++ +  T 
Sbjct: 211 KCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSG--VKPNPMTV 268

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
           + +L AC         LK GKEIH   +RHG    + + + L+ +YA+   V  A  VF 
Sbjct: 269 SSILPACAE----LKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFD 324

Query: 247 QMAVKNVVSWSAMIACYARN-----------------------------------GMAFE 271
            M  ++VVSW+ ++  Y +N                                   G + E
Sbjct: 325 LMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEE 384

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           A+E+FR+M  +     PN +T+ S+L AC+    L  GK IH Y+ R      L   +AL
Sbjct: 385 AVEMFRKM--QKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTAL 442

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MYA+CG L L + VFD M ++DVV+WN++I +  +HG G +A+ +F +M+   V P+ 
Sbjct: 443 LYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNS 502

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           ++F  VL  CSH+ LVEEG  +F SM ++H++ P   HY+C+VD+  RA +L EA K I+
Sbjct: 503 VTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQ 562

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
            + +EP    WG+LL +CR++ NVELA+ ++K+LFE+EP N GNYV L ++   A MW E
Sbjct: 563 GMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSE 622

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGY 571
             +V+ L++ RG+ K PG S ++V  K+++FV  D+ + + ++++  L  L  +MK  GY
Sbjct: 623 ASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGY 682

Query: 572 VPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKF 631
            P T  VL D+D EEK   +  HSEKLAVAFG++N +   TIR+ KNLR+C DCH+  K+
Sbjct: 683 KPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKY 742

Query: 632 ISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +SK     I+VRD  RFHHF+NG CSC D W
Sbjct: 743 MSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 773


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/614 (37%), Positives = 357/614 (58%), Gaps = 17/614 (2%)

Query: 55  LIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    + G  ++AL+V +     +  P Q T   +L +C     + +  +VH  +    
Sbjct: 273 MISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRA 332

Query: 111 FDQD-PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
            D +  FL   L+ +Y+   ++ D   VF+  + +TI  WN L    T  G+ EE L L+
Sbjct: 333 MDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLF 392

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG-YNGIVHIMTTL 228
            +M   G  +  D ++    L AC   +  FS L  G +IH  +++ G +N  V     L
Sbjct: 393 VQMQTQG--LMPDSYSLASSLSAC--GTISFSQL--GAQIHGYIIKTGNFNDFVQ--NAL 444

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMYA+ G V  A  +F ++  K++V+W++MI  +++NG + EA+ LF +M M    +  
Sbjct: 445 IDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKM-- 502

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + +T +SV+QAC+ L  LE+GK +H  ++  GL     + +AL  MY++CG+L++   VF
Sbjct: 503 DKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVF 562

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M +R +VSW+ +I+ YG+HG     I +F +M+  G+ P+ I+F+ +L ACSHAG VE
Sbjct: 563 DRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVE 622

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EGK+ F SM  E  + P  +H+ACMVDLL RA  L  A +II  L       +WG+LL  
Sbjct: 623 EGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNG 681

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH  +++ +   K L +++  + G Y LL+++YA    WD+  +V+ +++++GL+KVP
Sbjct: 682 CRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVP 741

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S IE+ +K+Y F   D  H Q + ++  L N  + +  + Y  +    +       KE
Sbjct: 742 GYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKE 801

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             V+ HSEKLA+AFG+INT  G T+RI+KNLR+C DCHSF K  SK   +EI++RD+NRF
Sbjct: 802 NNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRF 861

Query: 649 HHFRNGVCSCGDYW 662
           H FRNG CSC DYW
Sbjct: 862 HCFRNGSCSCNDYW 875



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 198/385 (51%), Gaps = 13/385 (3%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  L   C    +L+    +H+HL   G  + P   TKLI  Y+     + ++ VFD   
Sbjct: 4   YMPLFRRCATSTTLT---QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFP 60

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           +   ++W  L +     G  EE + LY  M        S+ F +  VLKAC     GF  
Sbjct: 61  KPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISN-FVFPSVLKAC----SGFGD 115

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L  G ++H  V++ G+     + T+L+ MY    C+  A   F  M +++VV+WS+++  
Sbjct: 116 LSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLN 175

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           + +NG A E L++F +MI E+ +  P+SVTM+SV +AC+ L +L  G+ +HGY++RR ++
Sbjct: 176 FVQNGQASEGLDMFSQMISEAVE--PDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIE 233

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
           S   + ++L+ MY + G L   + +F+++  R    W  +IS Y   G   +A+ +F +M
Sbjct: 234 SNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKM 293

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA-CMVDLLGRAN 441
               + P+ ++ V VL AC+  G V+EG+ +   + +  M  P ++     +++L     
Sbjct: 294 QEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAM-DPELDFLGPALMELYADTG 352

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLL 466
            L +  K+ E ++ E     W +L+
Sbjct: 353 NLRDCHKVFETIK-EKTILSWNTLI 376


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 245/666 (36%), Positives = 363/666 (54%), Gaps = 70/666 (10%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N L+ +L    +L  A  +    P     TY +++ S  +H  +S A     H  D   +
Sbjct: 104 NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA----RHYFDLAPE 159

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           +D      ++  Y     V++AR +F+      +  WNAL       G+  E  EL+ RM
Sbjct: 160 KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRM 219

Query: 173 NG----------TGTGIRSDR---------------FTYTYVL----------------- 190
            G          +G   R D                FT+T V+                 
Sbjct: 220 PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFD 279

Query: 191 ----------KACVASSCGFSLLKHGKEIHASVLRHGYNGI----VHIMTTLIDMYARFG 236
                      A VA+     ++   KE+        +N +    V    T++  YA+ G
Sbjct: 280 AMPERNAVSWNAMVAAYIQRRMMDEAKEL--------FNMMPCRNVASWNTMLTGYAQAG 331

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            +  A  VF  M  K+ VSW+AM+A Y++ G + E L+LF EM      +  N      V
Sbjct: 332 MLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV--NRSAFACV 389

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           L  CA +AALE G  +HG ++R G      V +AL+ MY +CG +E  +  F+ M++RDV
Sbjct: 390 LSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDV 449

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           VSWN++I+ Y  HG+G +A++IF  M      P  I+ V VL ACSH+GLVE+G   F S
Sbjct: 450 VSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYS 509

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE 476
           M  +  +    EHY CM+DLLGRA +L EA  +++D+  EP   +WG+LLG+ RIH N E
Sbjct: 510 MHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPE 569

Query: 477 LAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVK 536
           L   A++++FELEP NAG YVLL+++YA++  W + ++++ ++E RG++KVPG S IEV+
Sbjct: 570 LGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQ 629

Query: 537 RKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSE 596
            K+++F + D  HP+ E+++A L +L   MK+ GYV  T +VL+D++ EEKE ++  HSE
Sbjct: 630 NKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSE 689

Query: 597 KLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVC 656
           KLAVA+G++N   G  IR+ KNLR+C DCH+  K+IS    + IL+RD NRFHHFR G C
Sbjct: 690 KLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSC 749

Query: 657 SCGDYW 662
           SCGDYW
Sbjct: 750 SCGDYW 755



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 140/330 (42%), Gaps = 47/330 (14%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
            K I  +     V DA  +F    RR+   +NA+    +  GR      L+R +      
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----- 96

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG--YNGIVHIMTTLIDMYARFG 236
            R D ++Y  +L A   SS   SL           +R    YN        +I  +A  G
Sbjct: 97  -RPDNYSYNTLLHALAVSS---SLADARGLFDEMPVRDSVTYN-------VMISSHANHG 145

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            V  A   F     K+ VSW+ M+A Y RNG   EA  LF        D+   +  M   
Sbjct: 146 LVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT--EWDVISWNALMSGY 203

Query: 297 LQACAALAALE-----QGK-------MIHGYILR------RGLDSILPV-----VSALVT 333
           +Q      A E      G+       M+ GY  R      R L    PV      +A+V+
Sbjct: 204 VQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVS 263

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
            YA+ G LE  + VFD M +R+ VSWN+++++Y       +A ++F  M    V+    S
Sbjct: 264 GYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVA----S 319

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           + ++L   + AG++EE K +F++M ++  +
Sbjct: 320 WNTMLTGYAQAGMLEEAKAVFDTMPQKDAV 349


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/578 (38%), Positives = 347/578 (60%), Gaps = 13/578 (2%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           TY  L+  C  H ++ +   +  HL  NG     FLV  LIN+Y  F+ ++DA  +FD+ 
Sbjct: 15  TYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQM 74

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
            +R +  W  +  A +     ++ LEL   M     G+R + +TY+ VL+AC   S    
Sbjct: 75  PQRNVISWTTMISAYSKCKIHQKALELLVLM--LRDGVRPNVYTYSSVLRACNGMS---- 128

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
                + +H  +++ G    V++ + LID++A+ G    A  VF +M   + + W+++I 
Sbjct: 129 ---DVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIG 185

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            +A+N  +  ALELF+ M  +         T+ SVL+AC  LA LE G   H +I++   
Sbjct: 186 GFAQNSRSDVALELFKRM--KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQ 243

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           D IL   +ALV MY +CG LE  + VF+ M +RDV++W+++IS    +GY  +A+++F+ 
Sbjct: 244 DLILN--NALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFEL 301

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   G  P+ I+ V VL ACSHAGL+E+G   F SM+K + I P  EHY CM+DLLG+A 
Sbjct: 302 MKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAG 361

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
           KL++A K++ ++  EP    W +LLG+CR+  N+ LAE A+K++  L+P +AG Y +L++
Sbjct: 362 KLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSN 421

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YA +  WD V+ +++ +   G++K PG S IEV +++++F+  DE HPQ  +++  L  
Sbjct: 422 IYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQ 481

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           L   +   GYVP+T  VL DL+ E+ E  +  HSEKLA+AFGL+     + IRI KNLR+
Sbjct: 482 LIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRI 541

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           C DCH F K  SK  N+ I++RD  R+HHF++G CSCG
Sbjct: 542 CGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSCG 579



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 106/213 (49%), Gaps = 21/213 (9%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           ++SH L  +S T   +++ C +  A+ +G +I  ++   G   ++ +V+ L+ MY +   
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNL 63

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L     +FD M +R+V+SW ++IS+Y       KA+++   M+  GV P+  ++ SVL A
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA 123

Query: 401 CS--------HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           C+        H G+++EG            +   V   + ++D+  +  + E+A  + ++
Sbjct: 124 CNGMSDVRMLHCGIIKEG------------LESDVYVRSALIDVFAKLGEPEDALSVFDE 171

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
           + +     VW S++G    +   ++A    KR+
Sbjct: 172 M-VTGDAIVWNSIIGGFAQNSRSDVALELFKRM 203


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/581 (40%), Positives = 349/581 (60%), Gaps = 9/581 (1%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
            +E+L L C     L      H+ +   G   D      LIN+YS   SVD AR VFD+ 
Sbjct: 67  VHEILKL-CAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEM 125

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             R++  WN +  +LT  G   E L+L  +M   GT      FT + VL AC A+ C  S
Sbjct: 126 PSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPF--SEFTISSVLCAC-AAKCALS 182

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
                + +HA  ++   +  V + T L+D+YA+ G +  A  VF  M  ++VV+WS+M A
Sbjct: 183 ---ECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAA 239

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            Y +N M  +AL LFR+       L  +   M SV+ ACA LAA+ +GK ++  + + G 
Sbjct: 240 GYVQNEMYEQALALFRKAW--ETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGF 297

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
            S + V S+L+ MYA+CG +E    VF  ++KR+VV WN++IS    H    + + +F++
Sbjct: 298 CSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEK 357

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   G+SP+ ++FVSVL AC H GLV +G+  F+ M KEH + P+V HY+CMVD L RA 
Sbjct: 358 MQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAG 417

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
           ++ EA  +I  L       +WGSLL SCR H N+ELAE A+K+LF++EP N+GNY+LL++
Sbjct: 418 QIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSN 477

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YAA   WDEV ++++LL+   ++K  G+S IE+K K++ F+  +  HP+  ++++ L  
Sbjct: 478 MYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNE 537

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           +  E+++ GY  +T+  L+ +    K+ ++  HSEKLA   GL+       IRI KNLR+
Sbjct: 538 VMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRI 597

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCHSF K  SKF  ++++VRD NRFHHF+NG CSCGD+W
Sbjct: 598 CGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 163/326 (50%), Gaps = 18/326 (5%)

Query: 53  NELIQSLCKQGNLRQALDVL---SIEPNP-TQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I SL + G   +ALD+L     E  P ++ T   +L +C    +LS+   +H+    
Sbjct: 134 NTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIK 193

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              D + F+ T L++VY+    + DA  VF+    R++  W+++          E+ L L
Sbjct: 194 AAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALAL 253

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +R+     TG++ D+F  + V+ AC     G + +  GK+++A + + G+   + + ++L
Sbjct: 254 FRK--AWETGLKHDQFLMSSVICACA----GLAAMIEGKQMNALLSKSGFCSNIFVASSL 307

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMYA+ G +  +  VF  +  +NVV W+AMI+  +R+  + E + LF +  M+   L P
Sbjct: 308 IDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEK--MQQMGLSP 365

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALVTMYARCGKLELGQ 345
           N VT VSVL AC  +  + +G+     + +     + P V   S +V   +R G++    
Sbjct: 366 NDVTFVSVLSACGHMGLVRKGQKYFDLMTKE--HHLAPNVFHYSCMVDTLSRAGQIFEAY 423

Query: 346 CVFDHMDKRDVVS-WNSLISSYGVHG 370
            +   +      S W SL++S   HG
Sbjct: 424 DLISKLPFNASASMWGSLLASCRTHG 449


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/628 (37%), Positives = 365/628 (58%), Gaps = 20/628 (3%)

Query: 42  TTPTSLSSRNKNELIQS---LCKQGNLRQALDVL-SIEPN---PTQHTYELLLLSCTHHN 94
           T   S SS ++  L+     LC Q +L +A+  + S++ +       TY  L+  C  + 
Sbjct: 16  TLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNR 75

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           ++ +   +  HL  NG     FLV  LIN+Y  F+ ++DA  +FD+  +R +  W  +  
Sbjct: 76  AVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMIS 135

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
           A +     ++ LEL   M      +R + +TY+ VL++C   S         + +H  ++
Sbjct: 136 AYSKCKIHQKALELLVLM--LRDNVRPNVYTYSSVLRSCNGMS-------DVRMLHCGII 186

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           + G    V + + LID++A+ G    A  VF +M   + + W+++I  +A+N  +  ALE
Sbjct: 187 KEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALE 246

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           LF+ M  +         T+ SVL+AC  LA LE G   H +I++   D IL   +ALV M
Sbjct: 247 LFKRM--KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILN--NALVDM 302

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y +CG LE    VF+ M +RDV++W+++IS    +GY  +A+++F+ M   G  P+ I+ 
Sbjct: 303 YCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITI 362

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           V VL ACSHAGL+E+G   F SM+K + I P  EHY CM+DLLG+A KL++A K++ ++ 
Sbjct: 363 VGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEME 422

Query: 455 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514
            EP    W +LLG+CR+  N+ LAE A+K++  L+P +AG Y LL+++YA +  WD V+ 
Sbjct: 423 CEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEE 482

Query: 515 VKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQ 574
           ++  +  RG++K PG S IEV +++++F+  D  HPQ  ++   L  L   +   GYVP+
Sbjct: 483 IRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPE 542

Query: 575 TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
           T  VL DL+ E+ E  +  HSEKLA+AFGL+     + IRI KNLR+C DCH F K  SK
Sbjct: 543 TNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASK 602

Query: 635 FANKEILVRDVNRFHHFRNGVCSCGDYW 662
              + I++RD  R+HHF++G CSCGDYW
Sbjct: 603 LEIRSIVIRDPIRYHHFQDGKCSCGDYW 630


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/691 (34%), Positives = 365/691 (52%), Gaps = 78/691 (11%)

Query: 42  TTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALN 101
           + PT++ S     LI+     G+  +A  +    P P   T   L+ + T H   ++A+ 
Sbjct: 5   SLPTNIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIK 64

Query: 102 VHSHLTDNGFD-----------------------------------QDPFLVTKLINVYS 126
           ++S L + G                                      D F+   LI+ Y 
Sbjct: 65  IYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYG 124

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
               V+ AR VFD    R +  W +L       G   + ++++R M  +G  ++ +  T 
Sbjct: 125 KCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSG--VKPNPMTV 182

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
           + +L AC         LK GKEIH   +RHG    + + + L+ +YA+   V  A  VF 
Sbjct: 183 SSILPACAE----LKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFD 238

Query: 247 QMAVKNVVSWSAMIACYARN-----------------------------------GMAFE 271
            M  ++VVSW+ ++  Y +N                                   G + E
Sbjct: 239 LMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEE 298

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           A+E+FR+M  +     PN +T+ S+L AC+    L  GK IH Y+ R      L   +AL
Sbjct: 299 AVEMFRKM--QKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTAL 356

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MYA+CG L L + VFD M ++DVV+WN++I +  +HG G +A+ +F +M+   V P+ 
Sbjct: 357 LYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNS 416

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           ++F  VL  CSH+ LVEEG  +F SM ++H++ P   HY+C+VD+  RA +L EA K I+
Sbjct: 417 VTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQ 476

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
            + +EP    WG+LL +CR++ NVELA+ ++K+LFE+EP N GNYV L ++   A MW E
Sbjct: 477 GMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSE 536

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGY 571
             +V+ L++ RG+ K PG S ++V  K+++FV  D+ + + ++++  L  L  +MK  GY
Sbjct: 537 ASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGY 596

Query: 572 VPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKF 631
            P T  VL D+D EEK   +  HSEKLAVAFG++N +   TIR+ KNLR+C DCH+  K+
Sbjct: 597 KPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKY 656

Query: 632 ISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +SK     I+VRD  RFHHF+NG CSC D W
Sbjct: 657 MSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 687


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/529 (40%), Positives = 335/529 (63%), Gaps = 7/529 (1%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  +F++ +   I+ WN + R    +      +EL+ +M+   + I  D  T+ ++ KA 
Sbjct: 88  AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHA-ASSILPDTHTFPFLFKA- 145

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
           VA     SL   G+ IH+ V+R+G++ +  +  +L+ MY+ FG    A  VF  M+ ++ 
Sbjct: 146 VAKLMDVSL---GEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDR 202

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+++I  +A NGM  EAL L+REM   S  + P+  TMVS+L AC  L AL  G+ +H
Sbjct: 203 VAWNSVINGFALNGMPNEALTLYREM--GSEGVEPDGFTMVSLLSACVELGALALGERVH 260

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
            Y+++ GL       +AL+ +Y++CG     Q VFD M++R VVSW SLI    V+G G 
Sbjct: 261 MYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGN 320

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A+++F E+   G+ PS I+FV VL ACSH G+++EG   F  M++E+ I P +EH+ CM
Sbjct: 321 EALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCM 380

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLL RA K+ +A   I ++ + P   +W +LLG+C IH ++EL E A   +  LE  ++
Sbjct: 381 VDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHS 440

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           G++VLL+++YA+   W +V+ V++++  +G++K PG S +E+K ++Y F+  D  HPQ E
Sbjct: 441 GDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSE 500

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           + +A+L  ++  +K +GYVP+T  VL D++ EEKE  +  H+EK+A+AF L+NT  G  I
Sbjct: 501 ETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPI 560

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           RI KNLR+C DCH   K ISK   +EI+VRD +RFHHF++G CSC DYW
Sbjct: 561 RIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 141/299 (47%), Gaps = 16/299 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  HT+  L  +      +S    +HS +  NGFD   F+   L+++YS F   + A  V
Sbjct: 134 PDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQV 193

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+    R    WN++     L G   E L LYR M     G+  D FT   +L ACV   
Sbjct: 194 FEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMG--SEGVEPDGFTMVSLLSACVE-- 249

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  G+ +H  +++ G     H    L+D+Y++ G    A  VF +M  ++VVSW+
Sbjct: 250 --LGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWT 307

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           ++I   A NG+  EAL+LF E  +E   L P+ +T V VL AC+    L++G     Y  
Sbjct: 308 SLIVGLAVNGLGNEALKLFGE--LERQGLKPSEITFVGVLYACSHCGMLDEG---FNYFR 362

Query: 318 RRGLD-SILPVV---SALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGY 371
           R   +  ILP +     +V +  R GK+        +M    + V W +L+ +  +HG+
Sbjct: 363 RMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGH 421



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 159/312 (50%), Gaps = 21/312 (6%)

Query: 187 TYVLKACVA--SSCGFSLLKHGKEIHASVLRHG-------YNGIVHIMTTLIDMYARFGC 237
           +++L+ C++    CG S  K  K+IHA  +RHG       +N   H++  L+ + A    
Sbjct: 31  SFILRKCISLVQLCGSSQSKL-KQIHAFSIRHGVPPQNPDFNK--HLIFALVSLSAPMS- 86

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
             +A  +F+Q+   N+ +W+ MI  +A +     A+ELF +M   S  + P++ T   + 
Sbjct: 87  --FAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAAS-SILPDTHTFPFLF 143

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           +A A L  +  G+ IH  ++R G DS+  V ++LV MY+  G  E    VF+ M  RD V
Sbjct: 144 KAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRV 203

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           +WNS+I+ + ++G   +A+ +++EM   GV P   + VS+L AC   G +  G+ +   M
Sbjct: 204 AWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYM 263

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
            K  +++      A ++DL  +     +A K+ +++  E     W SL+    ++    L
Sbjct: 264 VKVGLVQNQHASNA-LLDLYSKCGNFRDAQKVFDEME-ERSVVSWTSLIVGLAVN---GL 318

Query: 478 AERASKRLFELE 489
              A K   ELE
Sbjct: 319 GNEALKLFGELE 330


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/596 (37%), Positives = 355/596 (59%), Gaps = 14/596 (2%)

Query: 70  DVLSIEP-NPTQHTYELLLLSCTHHNSLSD--ALNVHSHLTDNGFDQDPFLVTKLINVYS 126
           + +S  P NP      LL    +  + L    A ++   ++ N  D    L+  ++++ +
Sbjct: 7   NFVSTTPENPLTKCISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSA 66

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
               +  A +VF       ++ WN + R    +         YR+M    + +  D  TY
Sbjct: 67  ---PMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQM--VVSCVEPDTHTY 121

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
            ++LKA   S      ++ G+ IH+  +R+G+  +V +  +L+ +YA  G    A  VF 
Sbjct: 122 PFLLKAISKSLN----VREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFE 177

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
            M  +++V+W++MI  +A NG   EAL LFREM +E  +  P+  T+VS+L A A L AL
Sbjct: 178 LMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVE--PDGFTVVSLLSASAELGAL 235

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
           E G+ +H Y+L+ GL     V ++L+ +YA+CG +   Q VF  M +R+ VSW SLI   
Sbjct: 236 ELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGL 295

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
            V+G+G +A+++FKEM   G+ PS I+FV VL ACSH G+++EG   F  M++E  I P 
Sbjct: 296 AVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPR 355

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF 486
           +EHY CMVDLL RA  +++A + I+++ ++P   +W +LLG+C IH ++ L E A   L 
Sbjct: 356 IEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLL 415

Query: 487 ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD 546
            LEP ++G+YVLL+++YA+   W +V+ ++R +   G++K PG S +E+  ++Y F   D
Sbjct: 416 NLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGD 475

Query: 547 EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLIN 606
             HPQ + ++ALL  ++  +K +GYVP T  VL D++ EEKE+ +  HSEK+A+AF L+N
Sbjct: 476 RSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLN 535

Query: 607 TSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           T  G  IR+ KNLR+C DCH   K I+K  ++EI++RD +RFHHFR G CSC DYW
Sbjct: 536 TPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/634 (35%), Positives = 351/634 (55%), Gaps = 45/634 (7%)

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
           N+ + + +  ++P+P   +   +L +C+    L     +H     +G  +D F+ T L+N
Sbjct: 329 NVFREMGLNGVKPDPMAMSS--ILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVN 386

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +Y++   V +A+ VFD    R +  WN+L       G  ++ L ++R M     G++ D 
Sbjct: 387 LYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREM--VLNGVKPDL 444

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
            T   +L AC         LK GK IH   +RHG    V +   L+ +YA+  CV  A  
Sbjct: 445 VTMLSILHACS----DLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQV 500

Query: 244 VFSQMAVKNVVSWSAMIACY-----------------------------------ARNGM 268
           VF  +  + V SW+ ++  Y                                    +N  
Sbjct: 501 VFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSR 560

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
             EA+E+FR+M  ++    P+  T+ S+L+AC+    L  GK IH Y+ R   D  L   
Sbjct: 561 IEEAMEIFRKM--QTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLART 618

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           +ALV MYA+CG L L + VFD M  +DV SWN++I + G+HG G +A+ +F++M+   V 
Sbjct: 619 NALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVK 678

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
           P   +F  VL ACSH+ LVEEG  +F SM ++H++ P  EHY C+VD+  RA  LEEA  
Sbjct: 679 PDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYG 738

Query: 449 IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
            I+ + +EP    W + L  CR++ NVELA+ ++K+LFE++P  + NYV L ++   A +
Sbjct: 739 FIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKL 798

Query: 509 WDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKE 568
           W E  ++++L++ RG+ K PG S   V  ++++FV+ D+ + + ++++  L  L A++K 
Sbjct: 799 WSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKA 858

Query: 569 KGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSF 628
            GY P T  VL+D+D EEK   +  HSEKLAVAFG++N +   TIR+ KNLR+C DCH+ 
Sbjct: 859 AGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNA 918

Query: 629 TKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            K++S      I+VRD  RFHHF+NG CSC D+W
Sbjct: 919 IKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 187/354 (52%), Gaps = 11/354 (3%)

Query: 61  KQG-NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
           +QG N+ + + +  ++ NP   T   +L  C+    L     +H  +  +G  +D F+ +
Sbjct: 123 QQGLNVFRKMGLNKVKANPL--TVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSS 180

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
             +N Y+    V +A+ VFD    R +  WN+L       G  ++ L ++R M     G+
Sbjct: 181 AFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREM--VLDGV 238

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
           + D  T + +L AC         LK GK IH   L+HG    V +   L+++Y    CV 
Sbjct: 239 KPDPVTVSCILSACS----DLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVR 294

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
            A  VF  M  +NV++W+++ +CY   G   + L +FREM +    + P+ + M S+L A
Sbjct: 295 EAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNG--VKPDPMAMSSILPA 352

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           C+ L  L+ GK IHG+ ++ G+   + V +ALV +YA C  +   Q VFD M  R+VV+W
Sbjct: 353 CSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTW 412

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           NSL S Y   G+  K + +F+EM+ +GV P  ++ +S+L ACS    ++ GK++
Sbjct: 413 NSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVI 466



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/418 (30%), Positives = 205/418 (49%), Gaps = 18/418 (4%)

Query: 98  DALNV---HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           DAL V   H   T  G   D  +    I+ Y     V+ AR VFD    R +  WN+L  
Sbjct: 55  DALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSA 114

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
                G  ++ L ++R+M      ++++  T + +L  C         LK GKEIH  V+
Sbjct: 115 CYVNCGFPQQGLNVFRKMG--LNKVKANPLTVSSILPGCS----DLQDLKSGKEIHGFVV 168

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           RHG    V + +  ++ YA+  CV  A  VF  M  ++VV+W+++ +CY   G   + L 
Sbjct: 169 RHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLN 228

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           +FREM+++   + P+ VT+  +L AC+ L  L+ GK IHG+ L+ G+   + V +ALV +
Sbjct: 229 VFREMVLDG--VKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNL 286

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y  C  +   Q VFD M  R+V++WNSL S Y   G+  K + +F+EM  +GV P P++ 
Sbjct: 287 YESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAM 346

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC--MVDLLGRANKLEEAAKIIED 452
            S+L ACS    ++ GK +     K  M+    + + C  +V+L      + EA  +  D
Sbjct: 347 SSILPACSQLKDLKSGKTIHGFAVKHGMVE---DVFVCTALVNLYANCLCVREAQTVF-D 402

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWD 510
           L        W S L SC ++C          R   L         +L+ ++A +D+ D
Sbjct: 403 LMPHRNVVTWNS-LSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQD 459



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 185/355 (52%), Gaps = 10/355 (2%)

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
           N+ + + +  ++P+P   T   +L +C+    L     +H     +G  ++ F+   L+N
Sbjct: 228 NVFREMVLDGVKPDPV--TVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVN 285

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +Y     V +A+ VFD    R +  WN+L       G  ++ L ++R M   G  ++ D 
Sbjct: 286 LYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNG--VKPDP 343

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
              + +L AC         LK GK IH   ++HG    V + T L+++YA   CV  A  
Sbjct: 344 MAMSSILPACSQ----LKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQT 399

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF  M  +NVV+W+++ +CY   G   + L +FREM++    + P+ VTM+S+L AC+ L
Sbjct: 400 VFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNG--VKPDLVTMLSILHACSDL 457

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
             L+ GK+IHG+ +R G+   + V +AL+++YA+C  +   Q VFD +  R+V SWN ++
Sbjct: 458 QDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGIL 517

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           ++Y  +    K + +F +M    V    I++  V+G C     +EE   +F  M+
Sbjct: 518 TAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQ 572



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 156/314 (49%), Gaps = 11/314 (3%)

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
           G   E +++Y   +    GI+ D+  +  V KAC AS     +    K+ H    R G  
Sbjct: 19  GLPNEAIKIY--TSSRARGIKPDKPVFMAVAKACAASRDALKV----KQFHDDATRCGVM 72

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             V I    I  Y +  CV  A  VF  +  ++VV+W+++ ACY   G   + L +FR+M
Sbjct: 73  SDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKM 132

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
            +  + +  N +T+ S+L  C+ L  L+ GK IHG+++R G+   + V SA V  YA+C 
Sbjct: 133 GL--NKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCL 190

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            +   Q VFD M  RDVV+WNSL S Y   G+  K + +F+EM+  GV P P++   +L 
Sbjct: 191 CVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILS 250

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           ACS    ++ GK +     K  M+       A +V+L      + EA  +  DL      
Sbjct: 251 ACSDLQDLKSGKAIHGFALKHGMVENVFVSNA-LVNLYESCLCVREAQAVF-DLMPHRNV 308

Query: 460 KVWGSLLGSCRIHC 473
             W S L SC ++C
Sbjct: 309 ITWNS-LASCYVNC 321



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 100/213 (46%), Gaps = 12/213 (5%)

Query: 55  LIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    K   + +A+++     ++   P + T   +L +C+    L     +H ++  + 
Sbjct: 551 VIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHW 610

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
            D D      L+++Y+    +  +R+VFD    + ++ WN +  A  + G G+E L L+ 
Sbjct: 611 KDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFE 670

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLI 229
           +M    + ++ D  T+T VL AC  S     L++ G +I  S+ R H         T ++
Sbjct: 671 KM--LLSMVKPDSATFTCVLSACSHS----MLVEEGVQIFNSMSRDHLVEPEAEHYTCVV 724

Query: 230 DMYARFGCVMYA-GFVFSQMAVKNVVSWSAMIA 261
           D+Y+R GC+  A GF+         ++W A +A
Sbjct: 725 DIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLA 757


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/564 (39%), Positives = 351/564 (62%), Gaps = 10/564 (1%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLIN-VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
            +H+ +   G  +   L+TKL++  Y+    +   R +F    +   +++++L    +  
Sbjct: 37  QIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKF 96

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
              +E L  YRRM      I S  +T++ V+K    SS   +    G+ IH  V   GY 
Sbjct: 97  SFPQESLLCYRRM--LLANISSSNYTFSAVIK----SSADLTAFSIGETIHCHVYICGYG 150

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
              ++   L+  YA+ G VM A  VF +M  K VV+W++MI+ Y +NG   EA+ELF   
Sbjct: 151 LDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELF--F 208

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           +M+   + P+S T VS+L ACA + A+  G  +H YI R   D  + + +AL+ MY+RCG
Sbjct: 209 LMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCG 268

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            +   + VFD M+++++V+W ++IS YG+HG+G +AI++F EM + G  P+ ++FV+VL 
Sbjct: 269 NVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLS 328

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI-EPG 458
           AC+HAGLV+EG+ +F +M++E+ + PSVEH  CMVD+LGRA  L EA + I++    EP 
Sbjct: 329 ACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPA 388

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
           P VW ++LG+C++H N +L    ++ L  +EP N G+YV+L+++YA A   D V++++ +
Sbjct: 389 PAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNI 448

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
           +    L+K  G S I+V  K+Y F   D+ HP+  Q++  L  L +  +E GY+P ++ V
Sbjct: 449 MIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESV 508

Query: 579 LYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANK 638
           +++++ EE+E  +  HSEKLA+AFGL+ T  G  IRI KNLR+CEDCH+  K+IS  AN+
Sbjct: 509 MHEVEEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANR 568

Query: 639 EILVRDVNRFHHFRNGVCSCGDYW 662
           EI VRD  RFHHF++G CSC DYW
Sbjct: 569 EINVRDRLRFHHFKDGSCSCQDYW 592



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 165/371 (44%), Gaps = 42/371 (11%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           + +T+  ++ S     + S    +H H+   G+  D ++   L++ Y+    V  AR VF
Sbjct: 117 SNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVF 176

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           DK   +T+  WN++       G G+E +EL+  M     G++ D  T+  +L AC     
Sbjct: 177 DKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQ--DLGVKPDSSTFVSLLSACAQVGA 234

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
               +  G  +H  + R+ ++  V + T L++MY+R G V  A  VF  M  KN+V+W+A
Sbjct: 235 ----IGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTA 290

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           MI+ Y  +G   +A+ELF EM  +     PN+VT V+VL ACA    +++G+ I      
Sbjct: 291 MISGYGMHGHGSQAIELFNEMSFDGPR--PNNVTFVAVLSACAHAGLVDEGRQI------ 342

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
                     + +   Y     +E   C+ D +               G  G+  +A Q 
Sbjct: 343 ---------FTTMKQEYGLVPSVEHQVCMVDML---------------GRAGHLNEAYQF 378

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
            K        P+P  + ++LGAC      + G  + E +       P   HY  + ++  
Sbjct: 379 IKNT--SPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPG--HYVMLSNIYA 434

Query: 439 RANKLEEAAKI 449
            A +++   KI
Sbjct: 435 LAGRMDRVEKI 445



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 14/218 (6%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G  ++A+++  +  +    P   T+  LL +C    ++     VH ++  
Sbjct: 188 NSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIAR 247

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           N FD +  L T L+N+YS   +V  AR VFD    + I  W A+     + G G + +EL
Sbjct: 248 NCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIEL 307

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTT 227
           +  M+  G   R +  T+  VL AC  +     L+  G++I  ++ + +G    V     
Sbjct: 308 FNEMSFDGP--RPNNVTFVAVLSACAHA----GLVDEGRQIFTTMKQEYGLVPSVEHQVC 361

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVS--WSAMI-AC 262
           ++DM  R G +  A       + K      W+AM+ AC
Sbjct: 362 MVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGAC 399


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/629 (35%), Positives = 365/629 (58%), Gaps = 23/629 (3%)

Query: 39  NSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSD 98
           NS+   TS + R +    QSL  + ++     +L    +P   ++  +L SC   +    
Sbjct: 10  NSAVASTSWNVRLRELAYQSLFTE-SISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVS 68

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIY--VWNALFRAL 156
              +H H+   G + +PF++T LI++Y     V+DAR VF++    +     +NAL    
Sbjct: 69  GQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGY 128

Query: 157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
           T   +  +   ++RRM  TG  +  D  T   ++  C         L  G+ +H   ++ 
Sbjct: 129 TANSKVSDAAFMFRRMKETGVSV--DSVTILGLVPLCTVPE----YLWLGRSLHGECVKG 182

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
           G    V ++ + I MY + G V     +F +M VK +++W+A+I+ Y++NG+A++ LELF
Sbjct: 183 GTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELF 242

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
            +M  +S  +CP+  T+VSVL +CA L A + G+ +   +   G    + + +AL++MYA
Sbjct: 243 EQM--KSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYA 300

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           RCG L   + VFD M  + +VSW ++I  YG+HG G   + +F +MI  G+ P    FV 
Sbjct: 301 RCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVM 360

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           VL ACSH+GL ++G  LF +M++E+ + P  EHY+C+VDLLGRA +L+EA + I+ + +E
Sbjct: 361 VLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVE 420

Query: 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516
           P   VWG+LLG+C+IH NV++AE A  ++ E EP N G YVL++++Y+ +   + + R++
Sbjct: 421 PDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIR 480

Query: 517 RLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTK 576
            ++  R  +K PG S +E K K++ F++ D  H Q E++H +L  L   + E        
Sbjct: 481 VMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVME-------- 532

Query: 577 VVLYDLDAEEKERI---VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
            +  ++D +  E +      HSE+LA+AFG++N+  G  I + KNLR+CEDCH F K +S
Sbjct: 533 -LAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVS 591

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K  ++  +VRD +RFH+F++GVCSC DYW
Sbjct: 592 KIVDRRFVVRDASRFHYFKDGVCSCKDYW 620


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/542 (39%), Positives = 331/542 (61%), Gaps = 8/542 (1%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LIN +     +D A  VFD+   R +  WNA+   L      E  L L+R M+  G    
Sbjct: 29  LINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELG--FL 86

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D FT   VL+ C      ++    GK++HA VL++GY   + + ++L  MY + G +  
Sbjct: 87  PDEFTLGSVLRGCAGLRASYA----GKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGE 142

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
              V   M ++NVV+W+ +IA  A+NG     L+L+  M M    L P+ +T+VSV+ + 
Sbjct: 143 GEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSG--LRPDKITLVSVISSS 200

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           A LA L QG+ IH   ++ G +S + V+S+L++MY++CG LE         +  D V W+
Sbjct: 201 AELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWS 260

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           S+I++YG HG G +A+ +F++M   G+  + ++F+S+L ACSH GL E+G   F+ M ++
Sbjct: 261 SMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEK 320

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           + ++P +EHY C+VDLLGR+  L+EA  +I  + +E    +W +LL +CRIH N ++A R
Sbjct: 321 YGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATR 380

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
            ++ +  L P ++  YVLL++++A+A  W +V +V+  +  R ++K PG S +EVK +++
Sbjct: 381 TAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVF 440

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
            F   D+ HP  E++   L  L  EMK +GYVP T  V +D D+EEKE  ++ HSEKLA+
Sbjct: 441 QFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAI 500

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           AFGL+N   G  IR+ KNLR+C DCH   K IS   N+EI+VRD +RFHHF++G CSCGD
Sbjct: 501 AFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGD 560

Query: 661 YW 662
           YW
Sbjct: 561 YW 562



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 148/308 (48%), Gaps = 10/308 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T   +L  C    +      VH+++   G++ +  + + L ++Y    S+ +   V
Sbjct: 87  PDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKV 146

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
               R R +  WN L       G  E VL+LY  M    +G+R D+ T    L + ++SS
Sbjct: 147 IKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMK--MSGLRPDKIT----LVSVISSS 200

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
              + L  G++IHA  ++ G N  V ++++LI MY++ GC+  +          + V WS
Sbjct: 201 AELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWS 260

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           +MIA Y  +G   EA+ LF +  ME   L  N VT +S+L AC+     E+G      ++
Sbjct: 261 SMIAAYGFHGRGEEAVHLFEQ--MEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMV 318

Query: 318 RR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKA 375
            + GL   L   + +V +  R G L+  + +   M  + DVV W +L+S+  +H     A
Sbjct: 319 EKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMA 378

Query: 376 IQIFKEMI 383
            +  +E++
Sbjct: 379 TRTAEEIL 386


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/481 (44%), Positives = 317/481 (65%), Gaps = 10/481 (2%)

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
            Y  +L++C+A       +K GK++HA V   G+     I T L+++Y     +  A  +
Sbjct: 77  NYASLLQSCIARKA----IKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F ++   N+  W+ +I  YA NG    A++L+ +M    + L P++ T   VL+ACAAL+
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMF--DYGLVPDNFTFPFVLKACAALS 190

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD---VVSWNS 361
           A+E G+ IH ++++ G +  + V +AL+ MYA+CG +   + VFD +  RD   VVSWN+
Sbjct: 191 AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNA 250

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +I+ Y +HG+  +A+ +F+EM      P  I+FV VL ACSH GL+EEG M FE+M +++
Sbjct: 251 MITGYAMHGHATEALDLFEEM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDY 309

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
            I P+V+HY CMVDLLG + +L+EA  +I  +++ P   VWG+LL SC+IH NVEL E A
Sbjct: 310 KIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIA 369

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS 541
            +RL ELEP +AGNYV+L+++YA A  W+ V ++++L+  R L+K    S IEVK K+++
Sbjct: 370 LERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHA 429

Query: 542 FVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVA 601
           F+S D  HP  +++++ L  +   MKE GY P T  V +D++ +EK  +V  HSE+LA+A
Sbjct: 430 FLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIA 489

Query: 602 FGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
           FGLI+T  G  + ITKNLR+CEDCH   KFISK   +EI VRDVNR+HHF++GVCSCGDY
Sbjct: 490 FGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDY 549

Query: 662 W 662
           W
Sbjct: 550 W 550



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/299 (34%), Positives = 158/299 (52%), Gaps = 14/299 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            PT   Y  LL SC    ++     +H+ +   GF  D  + TKL+N+Y   DS+  AR 
Sbjct: 72  TPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARL 131

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FD+  +  I++WN L R     G  E  ++LY +M     G+  D FT+ +VLKAC A 
Sbjct: 132 LFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQM--FDYGLVPDNFTFPFVLKACAA- 188

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN---V 253
               S ++HG+EIH  V++ G+   V +   LIDMYA+ GCV  A  VF ++ V++   V
Sbjct: 189 ---LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLV 245

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+AMI  YA +G A EAL+LF EM   +    P+ +T V VL AC+    LE+G M  
Sbjct: 246 VSWNAMITGYAMHGHATEALDLFEEMNRVAK---PDHITFVGVLSACSHGGLLEEGWMFF 302

Query: 314 GYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMDK-RDVVSWNSLISSYGVHG 370
             ++R   +D  +   + +V +    G+L+    +   M    D   W +L++S  +H 
Sbjct: 303 ETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHA 361



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 92/197 (46%), Gaps = 11/197 (5%)

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           ES  L P      S+LQ+C A  A++ GK +H  +   G      + + LV +Y  C  L
Sbjct: 67  ESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSL 126

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
              + +FD + K ++  WN LI  Y  +G    A+Q++ +M  +G+ P   +F  VL AC
Sbjct: 127 SSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKAC 186

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEH----YACMVDLLGRANKLEEAAKIIEDLRIEP 457
           +    +E G+ +      EH+++   E      A ++D+  +   +  A ++ + + +  
Sbjct: 187 AALSAIEHGREI-----HEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRD 241

Query: 458 GPKV--WGSLLGSCRIH 472
              V  W +++    +H
Sbjct: 242 AVLVVSWNAMITGYAMH 258


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/529 (40%), Positives = 335/529 (63%), Gaps = 7/529 (1%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  +F++ +   I+ WN + R    +      +EL+ +M+   + I  D  T+ ++ KA 
Sbjct: 88  AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHA-ASSILPDTHTFPFLFKA- 145

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
           VA     SL   G+ IH+ V+R+G++ +  +  +L+ MY+  G +  A  VF  M+ ++ 
Sbjct: 146 VAKLMDVSL---GEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDR 202

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+++I  +A NGM  EAL L+REM   S  + P+  TMVS+L AC  L AL  G+ +H
Sbjct: 203 VAWNSVINGFALNGMPNEALTLYREM--GSEGVEPDGFTMVSLLSACVELGALALGERVH 260

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
            Y+++ GL       +AL+ +Y++CG     Q VFD M++R VVSW SLI    V+G G 
Sbjct: 261 MYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGN 320

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A+++F E+   G+ PS I+FV VL ACSH G+++EG   F  M++E+ I P +EH+ CM
Sbjct: 321 EALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCM 380

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLL RA K+ +A   I ++ + P   +W +LLG+C IH ++EL E A   +  LE  ++
Sbjct: 381 VDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHS 440

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           G++VLL+++YA+   W +V+ V++++  +G++K PG S +E+K ++Y F+  D  HPQ E
Sbjct: 441 GDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSE 500

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           + +A+L  ++  +K +GYVP+T  VL D++ EEKE  +  H+EK+A+AF L+NT  G  I
Sbjct: 501 ETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPI 560

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           RI KNLR+C DCH   K ISK   +EI+VRD +RFHHF++G CSC DYW
Sbjct: 561 RIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 141/299 (47%), Gaps = 16/299 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  HT+  L  +      +S    +HS +  NGFD   F+   L+++YS   S+  A  V
Sbjct: 134 PDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQV 193

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+    R    WN++     L G   E L LYR M     G+  D FT   +L ACV   
Sbjct: 194 FEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMG--SEGVEPDGFTMVSLLSACVE-- 249

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  G+ +H  +++ G     H    L+D+Y++ G    A  VF +M  ++VVSW+
Sbjct: 250 --LGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWT 307

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           ++I   A NG+  EAL+LF E  +E   L P+ +T V VL AC+    L++G     Y  
Sbjct: 308 SLIVGLAVNGLGNEALKLFGE--LERQGLKPSEITFVGVLYACSHCGMLDEG---FNYFR 362

Query: 318 RRGLD-SILPVV---SALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGY 371
           R   +  ILP +     +V +  R GK+        +M    + V W +L+ +  +HG+
Sbjct: 363 RMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGH 421



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 159/312 (50%), Gaps = 21/312 (6%)

Query: 187 TYVLKACVA--SSCGFSLLKHGKEIHASVLRHG-------YNGIVHIMTTLIDMYARFGC 237
           +++L+ C++    CG S  K  K+IHA  +RHG       +N   H++  L+ + A    
Sbjct: 31  SFILRKCISLVQLCGSSQSKL-KQIHAFSIRHGVPPQNPDFNK--HLIFALVSLSAPMS- 86

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
             +A  +F+Q+   N+ +W+ MI  +A +     A+ELF +M   S  + P++ T   + 
Sbjct: 87  --FAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAAS-SILPDTHTFPFLF 143

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           +A A L  +  G+ IH  ++R G DS+  V ++LV MY+  G L     VF+ M  RD V
Sbjct: 144 KAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRV 203

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           +WNS+I+ + ++G   +A+ +++EM   GV P   + VS+L AC   G +  G+ +   M
Sbjct: 204 AWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYM 263

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
            K  +++      A ++DL  +     +A K+ +++  E     W SL+    ++    L
Sbjct: 264 VKVGLVQNQHASNA-LLDLYSKCGNFRDAQKVFDEME-ERSVVSWTSLIVGLAVN---GL 318

Query: 478 AERASKRLFELE 489
              A K   ELE
Sbjct: 319 GNEALKLFGELE 330


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/666 (36%), Positives = 362/666 (54%), Gaps = 70/666 (10%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N L+ +L    +L  A  +    P     TY +++ S  +H  +S A     H  D   +
Sbjct: 104 NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA----RHYFDLAPE 159

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           +D      ++  Y     V++AR +F+         WNAL       G+  E  EL+ RM
Sbjct: 160 KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRM 219

Query: 173 NG----------TGTGIRSDR---------------FTYTYVL----------------- 190
            G          +G   R D                FT+T V+                 
Sbjct: 220 PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFD 279

Query: 191 ----------KACVASSCGFSLLKHGKEIHASVLRHGYNGI----VHIMTTLIDMYARFG 236
                      A VA+     ++   KE+        +N +    V    T++  YA+ G
Sbjct: 280 AMPERNAVSWNAMVAAYIQRRMMDEAKEL--------FNMMPCRNVASWNTMLTGYAQAG 331

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            +  A  VF  M  K+ VSW+AM+A Y++ G + E L+LF EM      +  N      V
Sbjct: 332 MLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV--NRSAFACV 389

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           L  CA +AALE G  +HG ++R G      V +AL+ MY +CG +E  +  F+ M++RDV
Sbjct: 390 LSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDV 449

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           VSWN++I+ Y  HG+G +A++IF  M      P  I+ V VL ACSH+GLVE+G   F S
Sbjct: 450 VSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYS 509

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE 476
           M  +  +    EHY CM+DLLGRA +L EA  +++D+  EP   +WG+LLG+ RIH N E
Sbjct: 510 MHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPE 569

Query: 477 LAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVK 536
           L   A++++FELEP NAG YVLL+++YA++  W + ++++ ++E RG++KVPG S IEV+
Sbjct: 570 LGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQ 629

Query: 537 RKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSE 596
            K+++F + D  HP+ E+++A L +L   MK+ GYV  T +VL+D++ EEKE ++  HSE
Sbjct: 630 NKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSE 689

Query: 597 KLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVC 656
           KLAVA+G++N   G  IR+ KNLR+C DCH+  K+IS    + IL+RD NRFHHFR G C
Sbjct: 690 KLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSC 749

Query: 657 SCGDYW 662
           SCGDYW
Sbjct: 750 SCGDYW 755



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 139/330 (42%), Gaps = 47/330 (14%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
            K I  +     V DA  +F    RR+   +NA+    +  GR      L+R +      
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----- 96

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG--YNGIVHIMTTLIDMYARFG 236
            R D ++Y  +L A   SS   SL           +R    YN        +I  +A  G
Sbjct: 97  -RPDNYSYNTLLHALAVSS---SLADARGLFDEMPVRDSVTYN-------VMISSHANHG 145

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            V  A   F     K+ VSW+ M+A Y RNG   EA  LF        D    +  M   
Sbjct: 146 LVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT--EWDAISWNALMSGY 203

Query: 297 LQACAALAALE-----QGK-------MIHGYILR------RGLDSILPV-----VSALVT 333
           +Q      A E      G+       M+ GY  R      R L    PV      +A+V+
Sbjct: 204 VQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVS 263

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
            YA+ G LE  + VFD M +R+ VSWN+++++Y       +A ++F  M    V+    S
Sbjct: 264 GYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVA----S 319

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           + ++L   + AG++EE K +F++M ++  +
Sbjct: 320 WNTMLTGYAQAGMLEEAKAVFDTMPQKDAV 349


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/614 (38%), Positives = 351/614 (57%), Gaps = 33/614 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  ++ + T  +SL     +H  +    F  D F+   LI+ YS    +D A  V
Sbjct: 129 PNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLV 188

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS- 196
           F K   + I  WN++       G  EE L+L++RM       R +R T   VL AC    
Sbjct: 189 FSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENA--RPNRVTMVGVLSACAKRI 246

Query: 197 -------SCGFSLLKHGKEIHASV----------------LRHGYNGI----VHIMTTLI 229
                  +C + + ++G +I+  +                 R  ++ +    +   TT+I
Sbjct: 247 DLEFGRWACDY-IERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMI 305

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
           D YA+ G    A  VF  M  +++ +W+A+I+ Y +NG   EAL +FRE+ + + +  PN
Sbjct: 306 DGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQL-NKNTKPN 364

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
            VT+ S L ACA L A++ G  IH YI ++G+     + ++L+ MY++CG LE    VF 
Sbjct: 365 EVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFY 424

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
            +++RDV  W+++I+   +HG+G  AI +F +M    V P+ ++F ++L ACSH+GLV+E
Sbjct: 425 SVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDE 484

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           G++ F  MR  + + P  +HYACMVD+LGRA  LEEA ++IE + I P   VWG+LLG+C
Sbjct: 485 GRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGAC 544

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
           RI+ NVELAE A  RL E +  N G YVLL+++YA A  WD V R+++ ++  GL+K PG
Sbjct: 545 RIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPG 604

Query: 530 RSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE-KE 588
            S IEV   ++ F+  D  HP   ++++ L  + A +K  GYV     +L  ++ E  KE
Sbjct: 605 CSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKE 664

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSEKLA+A+GLI     + IRI KNLR+C DCHS  K ISK  N++IL+RD  RF
Sbjct: 665 HALNLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRF 724

Query: 649 HHFRNGVCSCGDYW 662
           HHF  G CSC DYW
Sbjct: 725 HHFSGGNCSCMDYW 738



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 209/430 (48%), Gaps = 48/430 (11%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDA 134
           NP+  T  +L+  C +   L     +H+H+   G   DP   TKL      S   S+D A
Sbjct: 29  NPS--TVPILIDKCANKKHLK---QLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYA 83

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
             VFD+  R  +Y WN L RA   + +  + L ++ +M        S RF  +Y     +
Sbjct: 84  CKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLH-----ESQRFPNSYTFPFVI 138

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
            ++   S L  G+ IH  V++  +   + I  +LI  Y+  G +  A  VFS++  K++V
Sbjct: 139 KAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIV 198

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           SW++MI+ + + G   EAL+LF+ M ME+    PN VTMV VL ACA    LE G+    
Sbjct: 199 SWNSMISGFVQGGSPEEALQLFKRMKMENAR--PNRVTMVGVLSACAKRIDLEFGRWACD 256

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS---------------- 358
           YI R G+D  L + +A++ MY +CG LE  + +FD M+++D+VS                
Sbjct: 257 YIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDA 316

Query: 359 ---------------WNSLISSYGVHGYGGKAIQIFKEM-IYHGVSPSPISFVSVLGACS 402
                          WN+LISSY  +G   +A+ IF+E+ +     P+ ++  S L AC+
Sbjct: 317 ARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACA 376

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
             G ++ G  +   ++K+  I+ +      ++D+  +   LE+A ++   +       VW
Sbjct: 377 QLGAMDLGGWIHVYIKKQG-IKLNFHITTSLIDMYSKCGHLEKALEVFYSVE-RRDVFVW 434

Query: 463 GSLLGSCRIH 472
            +++    +H
Sbjct: 435 SAMIAGLAMH 444



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 18/220 (8%)

Query: 53  NELIQSLCKQGNLRQALDV-----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N LI S  + G  ++AL +     L+    P + T    L +C    ++     +H ++ 
Sbjct: 333 NALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIK 392

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
             G   +  + T LI++YS    ++ A  VF    RR ++VW+A+   L + G G   ++
Sbjct: 393 KQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAID 452

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN---GIVHI 224
           L+ +M    T ++ +  T+T +L AC  S     L+  G+ +  + +R  Y    G  H 
Sbjct: 453 LFSKMQ--ETKVKPNAVTFTNLLCACSHS----GLVDEGR-LFFNQMRPVYGVVPGSKH- 504

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMI-AC 262
              ++D+  R GC+  A  +  +M +    S W A++ AC
Sbjct: 505 YACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGAC 544


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/625 (38%), Positives = 369/625 (59%), Gaps = 48/625 (7%)

Query: 72  LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS--HFD 129
           LS E N  Q  +  LL  C++   L     +H  +   G   D    +KL+   +  +  
Sbjct: 12  LSSESNAAQTLH--LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSG 66

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           S+  AR VFD+  R   ++WN + R  + +   EE L LY  M      +  + +T+ ++
Sbjct: 67  SLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHM--LYHSVPHNAYTFPFL 124

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           LKAC +     S L+  ++IHA +++ G+   ++   +L+++Y++ G +  A  +F Q+ 
Sbjct: 125 LKACSS----MSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVD 180

Query: 250 VKNVVSWSAMIACYARNG---MAFE----------------------------ALELFRE 278
            ++ VSW++MI  Y + G   MA+E                            AL LF  
Sbjct: 181 QRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHR 240

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS-ALVTMYAR 337
           M  ++  +  ++V +VS LQACA L  L+QGK IH YI +  ++ I P++   L+ MYA+
Sbjct: 241 M--QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIE-IDPILGCVLIDMYAK 297

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           CG LE    VF  M+++ V  W ++IS Y +HG G +A++ F +M   GV P+ ++F  +
Sbjct: 298 CGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGI 357

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           L ACSHAGLV E K+LFESM + H  +PS+EHY CMVDLLGRA  L+EA ++IE++ ++P
Sbjct: 358 LTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKP 417

Query: 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
              +WG+LL +C IH N+EL ++  K L +++P + G Y+ LA ++AAA  W++  RV+R
Sbjct: 418 NAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRR 477

Query: 518 LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKV 577
            ++ +G+ K+PG S I V    + F++ DE HPQ +++  +L  +   ++E+GY P+   
Sbjct: 478 QMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGD 537

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           +L DL+ +EKE  +  HSEKLAV FGLI+T  G TIRI KNLR+CEDCH+  K ISK   
Sbjct: 538 LLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYA 597

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +EIL+RD  RFH F++G C+CGDYW
Sbjct: 598 REILMRDRTRFHLFKDGNCTCGDYW 622


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/610 (36%), Positives = 357/610 (58%), Gaps = 20/610 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N L+ +    G L++A  +   + N    ++  L+      N L DA      L D    
Sbjct: 174 NGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDA----RQLFDRMPV 229

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           +D      +I+ Y+    +  A+ +F+++  R ++ W A+       G  +E  + +  M
Sbjct: 230 RDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM 289

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                    +  +Y  +L   V       ++  G+   A   R+     +    T+I  Y
Sbjct: 290 P------VKNEISYNAMLAGYVQYK---KMVIAGELFEAMPCRN-----ISSWNTMITGY 335

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
            + G +  A  +F  M  ++ VSW+A+I+ YA+NG   EAL +F EM  +      N  T
Sbjct: 336 GQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGES--SNRST 393

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
               L  CA +AALE GK +HG +++ G ++   V +AL+ MY +CG  +    VF+ ++
Sbjct: 394 FSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIE 453

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
           ++DVVSWN++I+ Y  HG+G +A+ +F+ M   GV P  I+ V VL ACSH+GL++ G  
Sbjct: 454 EKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTE 513

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            F SM +++ ++P+ +HY CM+DLLGRA +LEEA  ++ ++  +PG   WG+LLG+ RIH
Sbjct: 514 YFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIH 573

Query: 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
            N EL E+A++ +F++EP N+G YVLL+++YAA+  W +V +++  +   G+QKV G S 
Sbjct: 574 GNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSW 633

Query: 533 IEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVL 592
           +EV+ K+++F   D FHP+ ++++A L  L  +M+ +GYV  TK+VL+D++ EEKE ++ 
Sbjct: 634 VEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLK 693

Query: 593 GHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652
            HSEKLAVAFG++    G  IR+ KNLR+C+DCH+  K ISK   + I++RD +RFHHF 
Sbjct: 694 YHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFS 753

Query: 653 NGVCSCGDYW 662
            G+CSCGDYW
Sbjct: 754 EGICSCGDYW 763



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 126/265 (47%), Gaps = 27/265 (10%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           ++V+W+  I+ + RNG    AL +F  M   S      SV+  +++      A     + 
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRRS------SVSYNAMISGYLRNAKFSLARD 98

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +   +  R L S     + ++T Y R  +L     +FD M K+DVVSWN+++S Y  +G+
Sbjct: 99  LFDKMPERDLFSW----NVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGF 154

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             +A ++F +M +     + IS+  +L A  H G ++E + LFES     +I      + 
Sbjct: 155 VDEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARRLFESQSNWELI-----SWN 205

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL-GSCRIHCNVELAERASKRLFELEP 490
           C++    + N L +A ++ + + +      W +++ G  ++    +L++  +KRLF   P
Sbjct: 206 CLMGGYVKRNMLGDARQLFDRMPVRDVIS-WNTMISGYAQVG---DLSQ--AKRLFNESP 259

Query: 491 T-NAGNYVLLADVYAAADMWDEVKR 514
             +   +  +   Y    M DE ++
Sbjct: 260 IRDVFTWTAMVSGYVQNGMVDEARK 284



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 22/178 (12%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +F  M  K+VVSW+AM++ YA+NG   EA E+F +M         NS++   +L A    
Sbjct: 130 LFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHR------NSISWNGLLAAYVHN 183

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
             L++ +     +     +  L   + L+  Y +   L   + +FD M  RDV+SWN++I
Sbjct: 184 GRLKEARR----LFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMI 239

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPI----SFVSVLGACSHAGLVEEGKMLFESM 417
           S Y   G   +A ++F E        SPI    ++ +++      G+V+E +  F+ M
Sbjct: 240 SGYAQVGDLSQAKRLFNE--------SPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM 289



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 155/375 (41%), Gaps = 57/375 (15%)

Query: 90  CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS--VDDARHVFDKTRRRTIY 147
           CT++   S   + +S+   +   +DP +VT    + SH  +   D A  VF+   RR+  
Sbjct: 19  CTNNYYRSKRRSTNSYSPSSVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSV 78

Query: 148 VWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGK 207
            +NA+        +     +L+ +M         D F++  +L        G+   +   
Sbjct: 79  SYNAMISGYLRNAKFSLARDLFDKMP------ERDLFSWNVML-------TGYVRNRRLG 125

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
           E H          +V     ++  YA+ G V  A  VF++M  +N +SW+ ++A Y  NG
Sbjct: 126 EAHKLFDLMPKKDVVS-WNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNG 184

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR------RGL 321
              EA  LF                     ++ +    +    ++ GY+ R      R L
Sbjct: 185 RLKEARRLF---------------------ESQSNWELISWNCLMGGYVKRNMLGDARQL 223

Query: 322 DSILPV-----VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
              +PV      + +++ YA+ G L   + +F+    RDV +W +++S Y  +G   +A 
Sbjct: 224 FDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEAR 283

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           + F EM       + IS+ ++L     AG V+  KM+      E M   ++  +  M+  
Sbjct: 284 KYFDEMPV----KNEISYNAML-----AGYVQYKKMVIAGELFEAMPCRNISSWNTMITG 334

Query: 437 LGRANKLEEAAKIIE 451
            G+   + +A K+ +
Sbjct: 335 YGQNGGIAQARKLFD 349


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/683 (35%), Positives = 377/683 (55%), Gaps = 82/683 (12%)

Query: 16  PYHTNSIA-HLP-----PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL 69
           PY + + A  LP     PKP         NS++ P SL S ++ ++I  L +  ++ Q L
Sbjct: 14  PYASTTFAASLPFSGPSPKPHP-------NSNSNPKSLKSLDQKQIISLLQRSRHINQVL 66

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
            +                               H+ L  NG  QDPF+V +L+   S   
Sbjct: 67  PI-------------------------------HAQLIRNGHSQDPFMVFELLRSCSKCH 95

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           ++D A  +F  T    +Y++ AL      +G   E ++LY RM      I  D +    +
Sbjct: 96  AIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRM--LHESILPDNYLMASI 153

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGY--NGIVHIM---------------------- 225
           LKAC +       L+ G+E+H+  L+ G+  N +V +                       
Sbjct: 154 LKACGSQLA----LREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMP 209

Query: 226 ------TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
                 T +I  Y+  G V  AG VFS++  K+ V W+AMI  + RN     ALE FR M
Sbjct: 210 EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGM 269

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
             +  ++ PN  T+V VL AC+ L ALE G+ +H Y+ +  ++  L V +AL+ MY+RCG
Sbjct: 270 --QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCG 327

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            ++  Q VFD M  RDV+++N++IS   ++G   +AI++F+ M+   + P+ ++FV VL 
Sbjct: 328 SIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLN 387

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           ACSH GLV+ G  +F SM +++ + P +EHY CMVDLLGR  +LEEA  +I  +++ P  
Sbjct: 388 ACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDH 447

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
            + G+LL +C++H N+EL E+ +K L +    ++G YVLL+ VYA++  W E  +V+  +
Sbjct: 448 IMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKM 507

Query: 520 EARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579
           +  G+QK PG S IEV  +++ F+  D  HPQ E+++  L  L+  ++ +GY P+ +VVL
Sbjct: 508 KEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVL 567

Query: 580 YDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKE 639
            D++  EKE  +  HSE+LA+ +GLI+T     IR+ KNLR+C DCHS  K I+K   ++
Sbjct: 568 QDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRK 627

Query: 640 ILVRDVNRFHHFRNGVCSCGDYW 662
           I+VRD NRFH+F NG CSCGDYW
Sbjct: 628 IVVRDRNRFHYFENGACSCGDYW 650


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/601 (35%), Positives = 351/601 (58%), Gaps = 40/601 (6%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD--DARHVFDKTRRRTIYVWNAL 152
           +L +   +H+ L  NG   +  L+ + +   +  +  +   +  + D+  + T++  N++
Sbjct: 21  TLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSM 80

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
            RA + +    +  + Y ++  +   +  D +T+ ++++ C  S+C     + G  +H +
Sbjct: 81  IRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQSAC-----EAGPAVHGA 135

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGC-------------------------------VMYA 241
           +++HG+    H+ + LI MYA   C                               + +A
Sbjct: 136 LIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFA 195

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
             +F  M  ++ VSW+AMIA YA+ G + EAL LF+ M M+   +  N V+M+SV+ AC 
Sbjct: 196 RNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV--NEVSMISVVTACT 253

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            L AL+QGK  H YI +  +   + + +ALV MY +CG ++    VF  M++++V +W++
Sbjct: 254 HLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWST 313

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
            I    ++GYG K +++F  M + G++P+ I+F+SVL  CS  G V+EG+  F+SM+++H
Sbjct: 314 AIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDH 373

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
            I P +EHY CMVDL GRA +LEEA   I  + ++P    WG+LL +CR++ N+EL E A
Sbjct: 374 GIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFA 433

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS 541
           S++L E+E  N G YV L+++YA    WD V  V++ ++A G+ K+PG S +EV  +++ 
Sbjct: 434 SRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHE 493

Query: 542 FVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVA 601
           F S D+ HP ++ +  +   +S  +K  GYV  T  VL+D++ EEKE  +  HSEK+A+A
Sbjct: 494 FFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIA 553

Query: 602 FGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
           FGL +  +G  IRI KNLR+C DCH  +K ISK   +EI+VRD NRFHHF++G CSC D+
Sbjct: 554 FGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDF 613

Query: 662 W 662
           W
Sbjct: 614 W 614



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 13/217 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHLTD 108
           N +I    ++G  R+AL++  +         E+ ++S    CTH  +L      H+++  
Sbjct: 211 NAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEK 270

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           N       L T L+++Y    +VD A  VF +   + +Y W+     L + G G++ LEL
Sbjct: 271 NKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLEL 330

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTT 227
           +  M     GI  +  T+  VLK C  S  GF  +  G+    S+ R HG    +     
Sbjct: 331 FSFMK--HEGIAPNEITFISVLKGC--SVVGF--VDEGRSHFDSMKRDHGIEPRLEHYGC 384

Query: 228 LIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-AC 262
           ++D+Y R G +  A    + M +K +  +W A++ AC
Sbjct: 385 MVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNAC 421


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/587 (39%), Positives = 344/587 (58%), Gaps = 15/587 (2%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           ++ ++  ++  C +   L     +H  +   GF  D  + T L+  YS   ++ DA  +F
Sbjct: 298 SESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLF 357

Query: 139 DKTR-RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
            +T     +  W A+          EE + L+  M   G  +R + FTY+ +L A    S
Sbjct: 358 KETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKG--VRPNEFTYSVILTALPVIS 415

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                     E+HA V++  Y     + T L+D Y + G V  A  VFS +  K++V+WS
Sbjct: 416 --------PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWS 467

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL-AALEQGKMIHGYI 316
           AM+A YA+ G    A+++F E+      + PN  T  S+L  CAA  A++ QGK  HG+ 
Sbjct: 468 AMLAGYAQAGETEAAIKIFSELT--KGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFA 525

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++  LDS L V SAL+TMYA+ G +E  + VF    ++D+VSWNS+IS Y  HG   KA+
Sbjct: 526 IKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKAL 585

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +FKEM    V    ++F+ V  AC+HAGLVEEG+  F+ M ++  I P+ EH +CMVDL
Sbjct: 586 DVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDL 645

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
             RA +LE+A K+I+++    G  +W ++L +CR+H   EL   A++++  + P ++  Y
Sbjct: 646 YSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAY 705

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++YA +  W E  +V++L+  R ++K PG S IEVK K Y+F++ D  HP  +Q++
Sbjct: 706 VLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIY 765

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L +LS  +K+ GY P T  VL D+D E KE ++  HSE+LA+AFGLI T KG  + I 
Sbjct: 766 MKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLII 825

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF-RNGVCSCGDYW 662
           KNLR+C DCH   K I+K   +EI+VRD NRFHHF  +GVCSCGD+W
Sbjct: 826 KNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 187/398 (46%), Gaps = 16/398 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P   T+   L            L VH+ +  NG D+   +   LIN+Y    +V  AR 
Sbjct: 195 QPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARI 254

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FDKT  +++  WN++       G   E L ++  M      +R    ++  ++K C   
Sbjct: 255 LFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMR--LNHVRLSESSFASIIKLC--- 309

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA-VKNVVS 255
                 L+  +++H SV+++G+    +I T L+  Y++   ++ A  +F +   + NVVS
Sbjct: 310 -ANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVS 368

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+AMI+ + +N    EA+ LF E  M+   + PN  T   +L A   ++  E    +H  
Sbjct: 369 WTAMISGFLQNDGKEEAVGLFSE--MKRKGVRPNEFTYSVILTALPVISPSE----VHAQ 422

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           +++   +    V +AL+  Y + GK++    VF  +D +D+V+W+++++ Y   G    A
Sbjct: 423 VVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAA 482

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGAC-SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           I+IF E+   GV P+  +F S+L  C +    + +GK  F     +  +  S+   + ++
Sbjct: 483 IKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQ-FHGFAIKSRLDSSLCVSSALL 541

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            +  +   +E A ++ +  R E     W S++     H
Sbjct: 542 TMYAKKGHIESAEEVFKRQR-EKDLVSWNSMISGYAQH 578



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 153/301 (50%), Gaps = 19/301 (6%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A ++FDK+  R    + +L    +  GR +E   L+  +N    G+  D   ++ VLK  
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLF--LNIQHLGMEMDCSIFSSVLK-- 105

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
           V+++    L   G+++H   ++ G+   V + T+L+D Y +         VF +M  +NV
Sbjct: 106 VSATLCDELF--GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNV 163

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+ +I+ YARN +  E L LF  M M+     PNS T  + L   A      +G  +H
Sbjct: 164 VTWTTLISGYARNSLNEEVLTLF--MRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVH 221

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             +++ GLD  +PV ++L+ +Y +CG +   + +FD  + + VV+WNS+IS Y  +G   
Sbjct: 222 TVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDL 281

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACS-----------HAGLVEEGKMLFESMRKEHM 422
           +A+ +F  M  + V  S  SF S++  C+           H  +V+ G +  +++R   M
Sbjct: 282 EALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALM 341

Query: 423 I 423
           +
Sbjct: 342 V 342



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 180/404 (44%), Gaps = 48/404 (11%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            +H      GF  D  + T L++ Y    +  D R+VFD+ + R +  W  L        
Sbjct: 118 QLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNS 177

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
             EEVL L+ RM   GT  + + FT+   L        G      G ++H  V+++G + 
Sbjct: 178 LNEEVLTLFMRMQDEGT--QPNSFTFAAALGVLAEEGVG----GRGLQVHTVVVKNGLDK 231

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            + +  +LI++Y + G V  A  +F +  VK+VV+W++MI+ YA NG+  EAL +F  M 
Sbjct: 232 TIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMR 291

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           +    L  +S    S+++ CA L  L   + +H  +++ G      + +AL+  Y++C  
Sbjct: 292 LNHVRLSESS--FASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMA 349

Query: 341 LELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           +     +F       +VVSW ++IS +  +    +A+ +F EM   GV P+  ++  +L 
Sbjct: 350 MLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILT 409

Query: 400 ACS-------HA------------------------GLVEEGKMLFESMRKEHMIRPSVE 428
           A         HA                        G V+E   +F  +  + ++     
Sbjct: 410 ALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIV----- 464

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLR---IEPGPKVWGSLLGSC 469
            ++ M+    +A + E A KI  +L    ++P    + S+L  C
Sbjct: 465 AWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVC 508


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/629 (37%), Positives = 364/629 (57%), Gaps = 50/629 (7%)

Query: 76  PNPT-QHTYELL---LLSCTHHNSL-SDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           P P  QH  +LL   L+S  H  +L S    VH+H+  NG  Q  +++TKLI + +  D 
Sbjct: 30  PFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDV 89

Query: 131 VDDARH--VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
              +    VF +      ++W A+ R   L G   E    Y RM   G G  S  FT++ 
Sbjct: 90  PMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVS--FTFSA 147

Query: 189 VLKACVASSCGFSLLKHGKEIHA-SVLRHGYNGIVHIMTTLIDMYAR---FGC------- 237
           + KAC A+      +  GK++HA ++L  G+   +++  ++ID+Y +    GC       
Sbjct: 148 LFKACGAALN----MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDE 203

Query: 238 -------------VMYAGF--------VFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
                        V YA +        +F  + +K++V+W+AM+  YA+NG   EALE F
Sbjct: 204 MSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYF 263

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV--SALVTM 334
           ++M  +   +  + VT+  V+ ACA L A++    I     R G      VV  SAL+ M
Sbjct: 264 QKM--QDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDM 321

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y++CG  +    VF+ M +R+V S++S+I  Y +HG    A+Q+F +M+   + P+ ++F
Sbjct: 322 YSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTF 381

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           + +L ACSHAGLVE+G+ LF  M K   + PS +HYACMVDLLGRA  LEEA  +++ + 
Sbjct: 382 IGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMP 441

Query: 455 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514
           +EP   VWG+LLG+CRIH N ++A+ A+  LF+LEP   GNY+LL+++YA+A  W+EV +
Sbjct: 442 MEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSK 501

Query: 515 VKRLLEARGLQKVPGRSRIEVKR-KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
           +++++  +G +K PG S  E K  +++ F + D  HP+  ++   L  L   ++  GY P
Sbjct: 502 LRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKP 561

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
                 YDL  +EKERI++ HSEKLA+A+GL+ T  G+TI+I KN+R+CEDCH+     S
Sbjct: 562 NLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAAS 621

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +   +EI+VRD  RFHHF NG CSCG++W
Sbjct: 622 EITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/628 (36%), Positives = 364/628 (57%), Gaps = 47/628 (7%)

Query: 72  LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV---YSHF 128
           +S+ P  +   Y ++  + T  +   +   +H+ +   G  QD + +TK ++     +  
Sbjct: 32  ISVGPLLSGSCYCMMPNTETRCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSS 91

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
           D +  A+ VFD   R   ++WN + R  + +   E  L LY+RM         + +T+  
Sbjct: 92  DFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRM--LCCSAPHNAYTFPS 149

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS-- 246
           +LKAC       S L+   +IHA + + GY   V+ + +LI+ YA  G    A  +F   
Sbjct: 150 LLKAC----SNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRI 205

Query: 247 -----------------------------QMAVKNVVSWSAMIACYARNGMAFEALELFR 277
                                        +M  KN +SW+ MI+ Y + GM  EAL+LF 
Sbjct: 206 PKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFH 265

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI--LRRGLDSILPVVSALVTMY 335
           E  M++ D+ P++V++ + L ACA L ALEQGK IH Y+   R  +DS+L  V  L+ MY
Sbjct: 266 E--MQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCV--LIDMY 321

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           A+CG +     VF ++ ++ V +W +LIS Y  HG+G +AI  F EM   G+ P+ I+F 
Sbjct: 322 AKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFT 381

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
           +VL ACS+ GLVEEGK++F +M +++ ++P++EHY C+VDLL RA  L+EA + I+++ +
Sbjct: 382 TVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPL 441

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
           +P   +WG+LL +CRIH N+EL E   + L  ++P + G YV  A+++A    WD+    
Sbjct: 442 KPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAET 501

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQ- 574
           +RL++ +G+ KVPG S I ++   + F++ D  HP+ E++ +    +  +++E GYVP+ 
Sbjct: 502 RRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPEL 561

Query: 575 TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
             ++L  +D +E+E IV  HSEKLA+ +GLI T  G TIRI KNLR+C+DCH  TK ISK
Sbjct: 562 EDMLLDLVDDDERETIVHQHSEKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISK 621

Query: 635 FANKEILVRDVNRFHHFRNGVCSCGDYW 662
              ++I++RD  RFHHFR+G CSCGDYW
Sbjct: 622 IYKRDIVMRDRTRFHHFRDGKCSCGDYW 649


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/633 (35%), Positives = 362/633 (57%), Gaps = 35/633 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N ++    + G +++A ++    P     ++  +L +   +  + DA      L ++  D
Sbjct: 146 NAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDA----RRLFESKAD 201

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            +      ++  Y   + + DAR +FD+   R    WN +       G   E+LE  R  
Sbjct: 202 WELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNG---ELLEAQRLF 258

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSC------GFSLLKHGKEIHASVLRHGYNGI----- 221
             +      D FT+T ++   V +         F  +     +  + +  GY        
Sbjct: 259 EESPV---RDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQ 315

Query: 222 ------------VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
                       V    T+I  YA+ G +  A   F +M  ++ +SW+A+IA YA++G  
Sbjct: 316 ARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYG 375

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EAL LF EM  +   L  N  T  S L  CA +AALE GK +HG +++ GL+S   V +
Sbjct: 376 EEALHLFVEMKRDGERL--NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGN 433

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           AL+ MY +CG ++    VF+ +++++VVSWN++I+ Y  HG+G +A+ +F+ M   G+ P
Sbjct: 434 ALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILP 493

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
             ++ V VL ACSH GLV++G   F SM +++ I  + +HY CM+DLLGRA +L++A  +
Sbjct: 494 DDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNL 553

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
           ++++  EP    WG+LLG+ RIH N EL E+A+K +FE+EP N+G YVLL+++YAA+  W
Sbjct: 554 MKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRW 613

Query: 510 DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569
            +V R++  +  RG++KVPG S +EV+ K+++F   D  HP+ ++++  L  L  +MK++
Sbjct: 614 GDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKE 673

Query: 570 GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
           GYV  TK+VL+D++ EEK  ++  HSEKLAVAFG++    G  IR+ KNLR+CEDCH+  
Sbjct: 674 GYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAM 733

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K ISK   + I++RD +RFHHF  G CSCGDYW
Sbjct: 734 KHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 153/343 (44%), Gaps = 32/343 (9%)

Query: 74  IEPNPTQH--TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV 131
            E  PT+   ++ +++  C  + +L  A      L D   ++D      +++ Y+    V
Sbjct: 103 FEKMPTRDLVSWNVMISGCVRYRNLRAA----RLLFDQMPERDVVSWNAMLSGYAQNGYV 158

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
            +A+ +FD+   +    WN +  A    GR E+   L+         I  +     YV +
Sbjct: 159 KEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFES-KADWELISWNCMMGGYVKR 217

Query: 192 ACVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
             +  + G F  +    E+                 T+I  YA+ G ++ A  +F +  V
Sbjct: 218 NRLVDARGIFDRMPERDEVS--------------WNTMISGYAQNGELLEAQRLFEESPV 263

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           ++V +W+AM++ Y +NGM  EA  +F  M  +      NSV+  +++        ++Q +
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDEARRVFDGMPEK------NSVSWNAIIAGYVQCKRMDQAR 317

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +   +  + + S     + ++T YA+ G +   +  FD M +RD +SW ++I+ Y   G
Sbjct: 318 ELFEAMPCQNVSSW----NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSG 373

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           YG +A+ +F EM   G   +  +F S L  C+    +E GK +
Sbjct: 374 YGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQV 416



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 120/265 (45%), Gaps = 25/265 (9%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           ++V W+  I  + RNG    AL LF  M   S      S++  +++  C +       + 
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRS------SISWNAMISGCLSNDKFYLARQ 101

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +   +  R L S   ++S  V    R   L   + +FD M +RDVVSWN+++S Y  +GY
Sbjct: 102 LFEKMPTRDLVSWNVMISGCV----RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGY 157

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             +A +IF EM       + IS+  +L A    G +E+ + LFES     +I      + 
Sbjct: 158 VKEAKEIFDEM----PCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELI-----SWN 208

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           CM+    + N+L +A  I  D   E     W +++       N EL E  ++RLFE  P 
Sbjct: 209 CMMGGYVKRNRLVDARGIF-DRMPERDEVSWNTMISG--YAQNGELLE--AQRLFEESPV 263

Query: 492 -NAGNYVLLADVYAAADMWDEVKRV 515
            +   +  +   Y    M DE +RV
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDEARRV 288



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 19/193 (9%)

Query: 236 GCVMY-----AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           GCV Y     A  +F QM  ++VVSW+AM++ YA+NG   EA E+F EM       C NS
Sbjct: 120 GCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP------CKNS 173

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           ++   +L A      +E  +     +     D  L   + ++  Y +  +L   + +FD 
Sbjct: 174 ISWNGMLAAYVQNGRIEDARR----LFESKADWELISWNCMMGGYVKRNRLVDARGIFDR 229

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M +RD VSWN++IS Y  +G   +A ++F+E     V     ++ +++      G+++E 
Sbjct: 230 MPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEA 285

Query: 411 KMLFESMRKEHMI 423
           + +F+ M +++ +
Sbjct: 286 RRVFDGMPEKNSV 298



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 134/324 (41%), Gaps = 52/324 (16%)

Query: 107 TDNGFDQDPFLVTKLINVYSHFDS--VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
           T +    D  +V   I + +H  +   D A  +F+   RR+   WNA+        +   
Sbjct: 39  TTSSLATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYL 98

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
             +L+ +M         D  ++  ++  CV     +  L+  + +   +        V  
Sbjct: 99  ARQLFEKMP------TRDLVSWNVMISGCVR----YRNLRAARLLFDQMPERD----VVS 144

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
              ++  YA+ G V  A  +F +M  KN +SW+ M+A Y +NG   +A  LF        
Sbjct: 145 WNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF-------- 196

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILR------RGLDSILP-----VVSALVT 333
                        ++ A    +    M+ GY+ R      RG+   +P       + +++
Sbjct: 197 -------------ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMIS 243

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
            YA+ G+L   Q +F+    RDV +W +++S Y  +G   +A ++F  M       + +S
Sbjct: 244 GYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM----PEKNSVS 299

Query: 394 FVSVLGACSHAGLVEEGKMLFESM 417
           + +++        +++ + LFE+M
Sbjct: 300 WNAIIAGYVQCKRMDQARELFEAM 323


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/584 (40%), Positives = 355/584 (60%), Gaps = 10/584 (1%)

Query: 81  HTYEL--LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           H  EL  LL S   + +  + +  H+ +   G   D      L+N+YS    V+ AR +F
Sbjct: 46  HVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLF 105

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           D+   R++  WN +  + T  G  E+ L L+ +M   GT      FT + V+ AC A  C
Sbjct: 106 DEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTS--CSEFTVSSVVCACAAKCC 163

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
            F      K++H   L+   +  V + T L+D+YA+ G V  A  VF  M  ++ V+WS+
Sbjct: 164 VFEC----KQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSS 219

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           M+A Y +N +  EAL LF     ++  L  N  T+ S L ACAA AAL +GK +     +
Sbjct: 220 MVAGYVQNELYEEALVLFHRA--QAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCK 277

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
            G+ S + V+S+L+ MYA+CG +E    VF  +++++VV WN+++S +  H    +A+  
Sbjct: 278 TGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIY 337

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
           F++M   G+ P+ I+++SVL ACSH GLVE+G+  F+ M + H + P+V HY+CMVD+LG
Sbjct: 338 FEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILG 397

Query: 439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVL 498
           RA  L EA   I+ +  +    +WGSLL SCRI+ N+ELAE A+K LFE+EP NAGN+VL
Sbjct: 398 RAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVL 457

Query: 499 LADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHAL 558
           L+++YAA D W+EV R + LL+    +K  G+S IE+K K++SF+  +  HP+  +++  
Sbjct: 458 LSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLK 517

Query: 559 LINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKN 618
           L +L  EMK+ GY  +T+  L+D++   K+ ++  HSEKLA+ FG++    G  IRI KN
Sbjct: 518 LEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKN 577

Query: 619 LRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           LR+C DCHSF K  S    +EI+VRD NRFHHF+NG CSCG++W
Sbjct: 578 LRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 158/322 (49%), Gaps = 20/322 (6%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNP-----TQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N ++ S  + G+  +AL VL ++        ++ T   ++ +C     + +   +H    
Sbjct: 117 NTMVGSHTQNGDCEKAL-VLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFAL 175

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
               D + F+ T L++VY+    V DA  VF+    R+   W+++          EE L 
Sbjct: 176 KTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALV 235

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+ R      G+  ++FT +  L AC A +        GK++ A   + G    + ++++
Sbjct: 236 LFHR--AQAMGLEHNQFTISSALSACAARAALIE----GKQVQAVSCKTGIGSNIFVISS 289

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           LIDMYA+ G +  A  VFS +  KNVV W+A+++ ++R+  + EA+  F +  M+   +C
Sbjct: 290 LIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEK--MQQMGIC 347

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALVTMYARCGKLELG 344
           PN +T +SVL AC+ L  +E+G+     ++R  + ++ P V   S +V +  R G L   
Sbjct: 348 PNDITYISVLSACSHLGLVEKGRKYFDLMIR--VHNVSPNVLHYSCMVDILGRAGLLHEA 405

Query: 345 QCVFDHMDKRDVVS-WNSLISS 365
           +   D M      S W SL++S
Sbjct: 406 KDFIDRMPFDATASMWGSLLAS 427



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 150/290 (51%), Gaps = 7/290 (2%)

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
            GIR+   T+   L+  + SS        G   HA ++R G          L++MY++ G
Sbjct: 40  VGIRA---THVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCG 96

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            V  A  +F +M V+++VSW+ M+  + +NG   +AL LF  M M+      +  T+ SV
Sbjct: 97  LVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLF--MQMQKEGTSCSEFTVSSV 154

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           + ACAA   + + K +HG+ L+  LDS + V +AL+ +YA+CG ++    VF+ M +R  
Sbjct: 155 VCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSD 214

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           V+W+S+++ Y  +    +A+ +F      G+  +  +  S L AC+    + EGK + ++
Sbjct: 215 VTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQV-QA 273

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           +  +  I  ++   + ++D+  +   +EEA  +   +  E    +W ++L
Sbjct: 274 VSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVE-EKNVVLWNAIL 322


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/592 (38%), Positives = 344/592 (58%), Gaps = 43/592 (7%)

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
           L D    +D    T +I  Y   D ++ AR VF+         WNA+       G  +E 
Sbjct: 214 LFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEA 273

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG----I 221
           L L R+M   G  I+ D  TYT ++ AC A+   F +   GK++HA +L++  N      
Sbjct: 274 LTLCRKMRFLG--IQFDDITYTTIISAC-ANVGSFQM---GKQVHAYILKNELNPNHSFC 327

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY------------------ 263
           + +   LI +Y +   V  A  +F  M V+N+++W+A+++ Y                  
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPV 387

Query: 264 -------------ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
                        A+NG   E L+LF++M ++  + C         L AC+ L ALE G+
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPC--DFAFAGALTACSVLGALENGR 445

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +H  ++  G +S L V +A+++MYA+CG +E  + VF  M   D+VSWNS+I++ G HG
Sbjct: 446 QLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHG 505

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
           +G KAI++F +M+  GV P  I+F++VL ACSHAGLVE+G+  F SM + + I P  +HY
Sbjct: 506 HGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHY 565

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
           A MVDL  RA     A  +I+ +  +PG  VW +LL  CRIH N++L   A+++LF+L P
Sbjct: 566 ARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMP 625

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
            N G YVLL+++YA    W+EV +V++L+  + ++K P  S IEV+ K++ F+  D+ HP
Sbjct: 626 QNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHP 685

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           +   ++  L  L  EMK+ GY+P TK VL+D++ E+KE  +  HSEKLAV FG++    G
Sbjct: 686 EVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPG 745

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            T+R+ KN+R+C DCH+  KF+SK A +EI+VRD  RFHHF+NG CSC DYW
Sbjct: 746 ATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/471 (22%), Positives = 186/471 (39%), Gaps = 129/471 (27%)

Query: 26  PPKPSSVCCCVSLNSSTTPTSLSSRNK--NELIQSLCKQGNLRQALDVLSIEPNPTQHTY 83
           P  P+S     ++++    +    R    N L++  CK  NL  A  +    PNP     
Sbjct: 23  PQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNP----- 77

Query: 84  ELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT-- 141
                                         D    T LI  Y    +++  R +F+ T  
Sbjct: 78  ------------------------------DAIARTTLITAYCALGNLELGREIFNGTPL 107

Query: 142 -RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV-----A 195
             R +++ +NA+       G G   LEL+R M       R D FT+T VL A V      
Sbjct: 108 YMRDSVF-YNAMITGYAHNGDGHSALELFRAMRRDD--FRPDDFTFTSVLSALVLFVGNE 164

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVH-IMTTLIDMYAR------FGC--VMYAGFVFS 246
             CG        ++H +V++ G   +   ++  L+ +Y +        C  ++ A  +F 
Sbjct: 165 QQCG--------QMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFD 216

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMI--------------------MESHDL 286
           +M  ++ ++W+ MI  Y RN     A E+F  M+                     E+  L
Sbjct: 217 EMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTL 276

Query: 287 CP---------NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS----ILPVVSALVT 333
           C          + +T  +++ ACA + + + GK +H YIL+  L+      L V +AL+T
Sbjct: 277 CRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALIT 336

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSY--------------------------- 366
           +Y +  K++  + +F  M  R++++WN+++S Y                           
Sbjct: 337 LYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVM 396

Query: 367 ----GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
                 +G+G + +++FK+M   G  P   +F   L ACS  G +E G+ L
Sbjct: 397 ISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 150/340 (44%), Gaps = 45/340 (13%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD-PFLVT---KLINVYSHFDSVDDARHV 137
           TY  ++ +C +  S      VH+++  N  + +  F ++    LI +Y   + VD+AR +
Sbjct: 291 TYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKI 350

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM-----------------NGTGT--- 177
           F     R I  WNA+      AGR EE    +  M                 NG G    
Sbjct: 351 FYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGL 410

Query: 178 ---------GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
                    G     F +   L AC         L++G+++HA ++  GY   + +   +
Sbjct: 411 KLFKQMRLDGFEPCDFAFAGALTACSV----LGALENGRQLHAQLVHLGYESSLSVGNAM 466

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MYA+ G V  A  VF  M   ++VSW++MIA   ++G   +A+ELF +M+ E   + P
Sbjct: 467 ISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEG--VFP 524

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCV 347
           + +T ++VL AC+    +E+G+     +L   G+       + +V ++ R G     + V
Sbjct: 525 DRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIV 584

Query: 348 FDHM-DKRDVVSWNSLISSYGVHGYGGKAI----QIFKEM 382
            D M  K     W +L++   +HG     I    Q+FK M
Sbjct: 585 IDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLM 624



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 12/208 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P    +   L +C+   +L +   +H+ L   G++    +   +I++Y+    V+ A  V
Sbjct: 423 PCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESV 482

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F       +  WN++  AL   G G + +EL+ +M     G+  DR T+  VL AC  S 
Sbjct: 483 FVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQM--LKEGVFPDRITFLTVLTAC--SH 538

Query: 198 CGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVS 255
            G  L++ G+    S+L  +G          ++D++ R G   YA  V   M  K     
Sbjct: 539 AG--LVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPV 596

Query: 256 WSAMIA-CYARNGM--AFEALE-LFREM 279
           W A++A C     M    EA E LF+ M
Sbjct: 597 WEALLAGCRIHGNMDLGIEAAEQLFKLM 624


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/629 (37%), Positives = 363/629 (57%), Gaps = 50/629 (7%)

Query: 76  PNPT-QHTYELL---LLSCTHHNSL-SDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           P P  QH  +LL   L+S  H  +L S    VH+H+  NG  Q  +++TKLI + +  D 
Sbjct: 30  PFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDV 89

Query: 131 VDDARH--VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
              +    VF +      ++W A+ R   L G   E    Y RM   G G  S  FT++ 
Sbjct: 90  PMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVS--FTFSA 147

Query: 189 VLKACVASSCGFSLLKHGKEIHA-SVLRHGYNGIVHIMTTLIDMYAR---FGC------- 237
           + KAC A+      +  GK++HA ++L  G+   +++  ++ID+Y +    GC       
Sbjct: 148 LFKACGAALN----MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDE 203

Query: 238 -------------VMYAGF--------VFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
                        V YA +        +F  +  K++V+W+AM+  YA+NG   EALE F
Sbjct: 204 MSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYF 263

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV--SALVTM 334
           ++M  +   +  + VT+  V+ ACA L A++    I     R G      VV  SAL+ M
Sbjct: 264 QKM--QDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDM 321

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y++CG  +    VF+ M +R+V S++S+I  Y +HG    A+Q+F +M+   + P+ ++F
Sbjct: 322 YSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTF 381

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           + +L ACSHAGLVE+G+ LF  M K   + PS +HYACMVDLLGRA  LEEA  +++ + 
Sbjct: 382 IGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMP 441

Query: 455 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514
           +EP   VWG+LLG+CRIH N ++A+ A+  LF+LEP   GNY+LL+++YA+A  W+EV +
Sbjct: 442 MEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSK 501

Query: 515 VKRLLEARGLQKVPGRSRIEVKR-KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
           +++++  +G +K PG S  E K  +++ F + D  HP+  ++   L  L   ++  GY P
Sbjct: 502 LRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKP 561

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
                 YDL  +EKERI++ HSEKLA+A+GL+ T  G+TI+I KN+R+CEDCH+     S
Sbjct: 562 NLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAAS 621

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +   +EI+VRD  RFHHF NG CSCG++W
Sbjct: 622 EITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 349/611 (57%), Gaps = 58/611 (9%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
           +HS     G   +P +  K+++      F  +  AR +FD     +++ WN +F+  +  
Sbjct: 33  IHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRI 92

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
              +  + LY  M      ++ D +TY ++ K    S      L+ G+E+H  V+++G +
Sbjct: 93  ACPKLGVSLYLEM--LERNVKPDCYTYPFLFKGFTRSVA----LQLGRELHCHVVKYGLD 146

Query: 220 GIVHIMTTLIDMYARFGCV-------------------------------------MYAG 242
             V     LI+MY+  G +                                     +  G
Sbjct: 147 SNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTG 206

Query: 243 FV-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           FV           F +M  ++ VSW+AMI  Y R     EAL LFREM  ++  + P+  
Sbjct: 207 FVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREM--QTSKIKPDEF 264

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           TMVSVL ACA L ALE G+ I  YI +  + +   V +AL+ MY +CG +E+   +F+ +
Sbjct: 265 TMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTL 324

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
            +RD  +W +++    ++G G +A+ +F +M+   V+P  +++V VL AC+H G+V+EGK
Sbjct: 325 PQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGK 384

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
             F SM   H I P++ HY CMVDLLG+A  L+EA +II+++ ++P   VWG+LLG+CRI
Sbjct: 385 KFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRI 444

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H + E+AERA +++ ELEP N   YVL  ++YAA + WD+++ +++++  RG++K PG S
Sbjct: 445 HKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCS 504

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            IE+   ++ FV+ D+ HPQ ++++  L  +++++K  GY P T  V  D+  E+KE  V
Sbjct: 505 LIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAV 564

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
             HSEKLA+AFGLIN+  G TIRI KNLR+C DCH   K +SK  ++E++VRD  RFHHF
Sbjct: 565 YRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHF 624

Query: 652 RNGVCSCGDYW 662
           R+G CSC DYW
Sbjct: 625 RHGSCSCKDYW 635



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 144/360 (40%), Gaps = 58/360 (16%)

Query: 60  CKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
           C +  +   L++L     P  +TY  L    T   +L     +H H+   G D + F   
Sbjct: 94  CPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHN 153

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG----------------- 162
            LIN+YS    +D AR +FD + +  +  WNA+        +                  
Sbjct: 154 ALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQV 213

Query: 163 -------------------------------EEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
                                          +E L L+R M    + I+ D FT   VL 
Sbjct: 214 DAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQ--TSKIKPDEFTMVSVLT 271

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           AC         L+ G+ I   + ++       +   LIDMY + G V  A  +F+ +  +
Sbjct: 272 ACAQ----LGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQR 327

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +  +W+AM+   A NG   EAL +F +M+  S  + P+ VT V VL AC     +++GK 
Sbjct: 328 DKFTWTAMVVGLAINGCGEEALNMFSQMLKAS--VTPDEVTYVGVLSACTHTGMVDEGKK 385

Query: 312 IHGYIL-RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
               +  R G++  +     +V +  + G L+    +  +M  K + + W +L+ +  +H
Sbjct: 386 FFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIH 445



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 153/371 (41%), Gaps = 55/371 (14%)

Query: 203 LKHGKEIHASVLRHGY--NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           + H K+IH+  ++ G   N I+            FG + YA  +F  +   +V SW+ M 
Sbjct: 27  MYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMF 86

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             Y+R       + L+ EM+    ++ P+  T   + +      AL+ G+ +H ++++ G
Sbjct: 87  KGYSRIACPKLGVSLYLEML--ERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYG 144

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG------------- 367
           LDS +   +AL+ MY+ CG +++ + +FD   K DVV+WN++IS Y              
Sbjct: 145 LDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIV 204

Query: 368 ------------------------------VHGY-----GGKAIQIFKEMIYHGVSPSPI 392
                                         + GY       +A+ +F+EM    + P   
Sbjct: 205 TGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEF 264

Query: 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           + VSVL AC+  G +E G+ +   + K  +   +    A ++D+  +   +E A  I   
Sbjct: 265 TMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNA-LIDMYFKCGNVEMALSIFNT 323

Query: 453 LRIEPGPKVWGSLLGSCRIH-CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
           L  +     W +++    I+ C  E     S+ L      +   YV +        M DE
Sbjct: 324 LP-QRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDE 382

Query: 512 VKRVKRLLEAR 522
            K+    + AR
Sbjct: 383 GKKFFASMTAR 393



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 11/207 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T   +L +C    +L     + +++  N    D F+   LI++Y    +V+ A  +
Sbjct: 261 PDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSI 320

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+   +R  + W A+   L + G GEE L ++ +M      +  D  TY  VL AC  + 
Sbjct: 321 FNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQM--LKASVTPDEVTYVGVLSACTHT- 377

Query: 198 CGFSLLKHGKEIHASVL-RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVS 255
               ++  GK+  AS+  RHG    +     ++D+  + G +  A  +   M +K N + 
Sbjct: 378 ---GMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIV 434

Query: 256 WSAMI-AC--YARNGMAFEALELFREM 279
           W A++ AC  +    MA  A+E   E+
Sbjct: 435 WGALLGACRIHKDAEMAERAIEQILEL 461


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/579 (37%), Positives = 357/579 (61%), Gaps = 11/579 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDKTRR 143
           L+ SCTH + L   L +H+H+      QDP +  + +     + F  +  +R +FD    
Sbjct: 33  LIKSCTHKSQL---LQIHAHIITTSSIQDPIVSLRFLTRTASAPFRDLGYSRRLFDLLTN 89

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
             +  +NA+ RA +L+    E L +YR M   G  +R+D  + ++ +K+C+      SLL
Sbjct: 90  PFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQG--VRADPLSSSFAVKSCIKL---LSLL 144

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
             G +IHA +  +G+     ++T+++D+Y+  G    A  +F ++  K+VV+W+ +I+C 
Sbjct: 145 -FGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCL 203

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
            RN    +AL LF  M   ++   P+ VT + +LQACA L ALE G+ IHGYI + G ++
Sbjct: 204 TRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNT 263

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
              + ++L++MY+RCG+++    VFD M +++VVSW+++IS   ++G+G +AI+ F EM 
Sbjct: 264 ESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQ 323

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
            +GV P   +F +VL ACSH GLV+EG   F+ MR+E MI P+V HY C+VDLLGRA  L
Sbjct: 324 KNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGML 383

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
           ++A ++I  + + P   +W +LLG+CRIH +  L ER  + L EL+   AG+YVLL ++Y
Sbjct: 384 DQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIY 443

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           ++A  WD+V  +++L++ +G+   P  + IE+   ++ F   D  HP  ++++  L  ++
Sbjct: 444 SSAGNWDKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEIN 503

Query: 564 AEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCE 623
            ++K  GY  +    L+ L+ ++K   +  HSEKLA+AFG++ T  G TIRI  N+R C 
Sbjct: 504 KQLKIAGYEAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTCM 563

Query: 624 DCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           DCH+F K+IS   N++++VRD +RFHHF+ G CSC D+W
Sbjct: 564 DCHNFAKYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 104/254 (40%), Gaps = 47/254 (18%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPT------QHTYELLLLSCTHHNSLSDALNVHSHL 106
           N LI  L +    R AL +  I  +PT      + T  LLL +C   N+L     +H ++
Sbjct: 197 NVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYI 256

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             +G++ +  L   LI++YS    +D A  VFDK   + +  W+A+   L++ G G E +
Sbjct: 257 QQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAI 316

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           E +  M     G+     T+T VL AC  S CG                           
Sbjct: 317 EAFWEMQ--KNGVEPGDHTFTAVLSAC--SHCG--------------------------- 345

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+D    F   M   F    M   NV  +  ++    R GM  +A EL   M     ++
Sbjct: 346 -LVDEGMAFFDRMRQEF----MIAPNVHHYGCIVDLLGRAGMLDQAYELIMSM-----EV 395

Query: 287 CPNSVTMVSVLQAC 300
            P++    ++L AC
Sbjct: 396 RPDATMWRTLLGAC 409


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/584 (40%), Positives = 355/584 (60%), Gaps = 10/584 (1%)

Query: 81  HTYEL--LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           H  EL  LL S   + +  + +  H+ +   G   D      L+N+YS    V+ AR +F
Sbjct: 19  HVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLF 78

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           D+   R++  WN +  + T  G  E+ L L+ +M   GT      FT + V+ AC A  C
Sbjct: 79  DEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTS--CSEFTVSSVVCACAAKCC 136

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
            F      K++H   L+   +  V + T L+D+YA+ G V  A  VF  M  ++ V+WS+
Sbjct: 137 VFEC----KQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSS 192

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           M+A Y +N +  EAL LF     ++  L  N  T+ S L ACAA AAL +GK +     +
Sbjct: 193 MVAGYVQNELYEEALVLFHRA--QAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCK 250

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
            G+ S + V+S+L+ MYA+CG +E    VF  +++++VV WN+++S +  H    +A+  
Sbjct: 251 TGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIY 310

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
           F++M   G+ P+ I+++SVL ACSH GLVE+G+  F+ M + H + P+V HY+CMVD+LG
Sbjct: 311 FEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILG 370

Query: 439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVL 498
           RA  L EA   I+ +  +    +WGSLL SCRI+ N+ELAE A+K LFE+EP NAGN+VL
Sbjct: 371 RAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVL 430

Query: 499 LADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHAL 558
           L+++YAA D W+EV R + LL+    +K  G+S IE+K K++SF+  +  HP+  +++  
Sbjct: 431 LSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLK 490

Query: 559 LINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKN 618
           L +L  EMK+ GY  +T+  L+D++   K+ ++  HSEKLA+ FG++    G  IRI KN
Sbjct: 491 LEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKN 550

Query: 619 LRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           LR+C DCHSF K  S    +EI+VRD NRFHHF+NG CSCG++W
Sbjct: 551 LRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 158/321 (49%), Gaps = 18/321 (5%)

Query: 53  NELIQSLCKQGNLRQALDV-LSIEPNPT---QHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++ S  + G+  +AL + + ++   T   + T   ++ +C     + +   +H     
Sbjct: 90  NTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALK 149

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              D + F+ T L++VY+    V DA  VF+    R+   W+++          EE L L
Sbjct: 150 TALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVL 209

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + R      G+  ++FT +  L AC A +        GK++ A   + G    + ++++L
Sbjct: 210 FHR--AQAMGLEHNQFTISSALSACAARAALIE----GKQVQAVSCKTGIGSNIFVISSL 263

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMYA+ G +  A  VFS +  KNVV W+A+++ ++R+  + EA+  F +  M+   +CP
Sbjct: 264 IDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEK--MQQMGICP 321

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALVTMYARCGKLELGQ 345
           N +T +SVL AC+ L  +E+G+     ++R  + ++ P V   S +V +  R G L   +
Sbjct: 322 NDITYISVLSACSHLGLVEKGRKYFDLMIR--VHNVSPNVLHYSCMVDILGRAGLLHEAK 379

Query: 346 CVFDHMDKRDVVS-WNSLISS 365
              D M      S W SL++S
Sbjct: 380 DFIDRMPFDATASMWGSLLAS 400



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 150/290 (51%), Gaps = 7/290 (2%)

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
            GIR+   T+   L+  + SS        G   HA ++R G          L++MY++ G
Sbjct: 13  VGIRA---THVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCG 69

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            V  A  +F +M V+++VSW+ M+  + +NG   +AL LF  M M+      +  T+ SV
Sbjct: 70  LVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLF--MQMQKEGTSCSEFTVSSV 127

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           + ACAA   + + K +HG+ L+  LDS + V +AL+ +YA+CG ++    VF+ M +R  
Sbjct: 128 VCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSD 187

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           V+W+S+++ Y  +    +A+ +F      G+  +  +  S L AC+    + EGK + ++
Sbjct: 188 VTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQV-QA 246

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           +  +  I  ++   + ++D+  +   +EEA  +   +  E    +W ++L
Sbjct: 247 VSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVE-EKNVVLWNAIL 295


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/582 (38%), Positives = 343/582 (58%), Gaps = 22/582 (3%)

Query: 90  CTHHNSLSDALNVHSHLT--------DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           C  H +  D   +H H+           G     F+   L+++Y+ F  +DDA  +FD+ 
Sbjct: 82  CVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRM 141

Query: 142 RRRTIYVWNALFRALTLA-GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
             R +  W  +  AL  A GR EE L     M     G+  + +T++ VL AC       
Sbjct: 142 PERNVVTWTTVVAALANADGRKEEALRFLVAM--WRDGVAPNAYTFSSVLGACGTPGVLA 199

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           +L       HAS ++ G +  V + ++LID Y + G +     VF +M  +++V W+++I
Sbjct: 200 AL-------HASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSII 252

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           A +A++G    A+ELF  M M+      N  T+ SVL+AC  +  LE G+ +H ++L+  
Sbjct: 253 AGFAQSGDGVGAIELF--MRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLKYE 310

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
            D IL   +AL+ MY +CG LE  + +F  M +RDV+SW+++IS    +G   +A+++F 
Sbjct: 311 RDLILH--NALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFD 368

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
            M   GV+P+ I+ V VL ACSHAGLVE+G   F SM+K   I+P  EH+ CMVDLLGRA
Sbjct: 369 LMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRA 428

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            KL+EA + I D+ +EP   +W +LLG+CR+H +  LA  A++ + +LEP + G  VLL+
Sbjct: 429 GKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLS 488

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           + YA    W + ++  + +  RG++K PGRS IE+++ ++ F++ D  HP  + +   L 
Sbjct: 489 NTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQELN 548

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            L   +   GYVPQT+ VL DL  E+KE ++  HSEK+A+AFG ++   G+ IRI KNLR
Sbjct: 549 RLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMHAVGGKPIRIMKNLR 608

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH+F K +SK   + I++RD  RFHHF++G CSCGDYW
Sbjct: 609 ICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/658 (35%), Positives = 369/658 (56%), Gaps = 52/658 (7%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN-----PTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N +I+S  K G  + AL++ S   N     P   T   +L  C    + S    +H    
Sbjct: 197 NSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAV 256

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            +   Q+ F+   L+++Y+    +D+A  VF     + +  WNA+    +  GR E+ + 
Sbjct: 257 TSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVR 316

Query: 168 LYRRMN---------------------GTG------------TGIRSDRFTYTYVLKACV 194
           L+ +M                      G G            +GI+ +  T   VL  C 
Sbjct: 317 LFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCA 376

Query: 195 ASSCGFSLLKHGKEIHASVLRH-------GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
           +       L HGKEIH   +++       G+     ++  LIDMYA+   V  A  +F  
Sbjct: 377 S----VGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDS 432

Query: 248 MAVK--NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
           ++ K  +VV+W+ MI  Y+++G A +ALEL  EM  E     PN+ T+   L ACA+LAA
Sbjct: 433 LSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAA 492

Query: 306 LEQGKMIHGYILRRGLDSI-LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           L  GK IH Y LR   +++ L V + L+ MYA+CG +   + VFD+M  ++ V+W SL++
Sbjct: 493 LRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMT 552

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
            YG+HGYG +A+ IF EM   G     ++ + VL ACSH+G++++G   F  M+    + 
Sbjct: 553 GYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVS 612

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484
           P  EHYAC+VDLLGRA +L  A ++IE++ +EP P VW + L  CRIH  VEL E A+++
Sbjct: 613 PGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEK 672

Query: 485 LFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS 544
           + EL   + G+Y LL+++YA A  W +V R++ L+  +G++K PG S +E  +   +F  
Sbjct: 673 ITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFV 732

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604
            D+ HP  ++++ +L++    +K+ GYVP+T   L+D+D EEK+ ++  HSEKLA+A+G+
Sbjct: 733 GDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGI 792

Query: 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + T +G  IRITKNLR+C DCH+   ++S+  + +I++RD +RFHHF+NG CSC  YW
Sbjct: 793 LTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 140/509 (27%), Positives = 229/509 (44%), Gaps = 67/509 (13%)

Query: 20  NSIAHLPPKPSSVCC---CVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVL---- 72
           N  +HL     SV C    VSL     P+     + N LI+S    G   + L +     
Sbjct: 60  NLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMH 119

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
           S+   P  +T+  +  +C   +S+    + H+     GF  + F+   L+ +YS   S+ 
Sbjct: 120 SLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLS 179

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           DAR VFD+     +  WN++  +    G+ +  LE++ RM     G R D  T   VL  
Sbjct: 180 DARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNE-FGCRPDNITLVNVLPP 238

Query: 193 CVASSCGFSLLKH--GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
           C       SL  H  GK++H   +       + +   L+DMYA+ G +  A  VFS M+V
Sbjct: 239 CA------SLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSV 292

Query: 251 KNVVSWSAMIA-----------------------------------CYARNGMAFEALEL 275
           K+VVSW+AM+A                                    YA+ G+ +EAL +
Sbjct: 293 KDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGV 352

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-------SILPVV 328
            R+M+  S  + PN VT++SVL  CA++ AL  GK IH Y ++  +D           V+
Sbjct: 353 CRQML--SSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVI 410

Query: 329 SALVTMYARCGKLELGQCVFDHMD--KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           + L+ MYA+C K++  + +FD +   +RDVV+W  +I  Y  HG   KA+++  EM    
Sbjct: 411 NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470

Query: 387 VSPSPISFV--SVLGACSHAGLVEEGKMLFE-SMRKEHMIRPSVEHYACMVDLLGRANKL 443
               P +F     L AC+    +  GK +   ++R +    P      C++D+  +   +
Sbjct: 471 CQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGSI 529

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            + A+++ D  +      W SL+    +H
Sbjct: 530 SD-ARLVFDNMMAKNEVTWTSLMTGYGMH 557



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 189/424 (44%), Gaps = 69/424 (16%)

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRR-----RTIYVWNALFRALTLAGRGEEVLELYRR 171
           L + LI+ Y    SV    H     RR       +Y WN+L R+    G   + L L+  
Sbjct: 61  LTSHLISTYI---SVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGL 117

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           M+        D +T+ +V KAC       S ++ G+  HA  L  G+   V +   L+ M
Sbjct: 118 MHSLSW--TPDNYTFPFVFKACGE----ISSVRCGESAHALSLVTGFISNVFVGNALVAM 171

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           Y+R   +  A  VF +M+V +VVSW+++I  YA+ G    ALE+F  M  E     P+++
Sbjct: 172 YSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNE-FGCRPDNI 230

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T+V+VL  CA+L     GK +H + +   +   + V + LV MYA+CG ++    VF +M
Sbjct: 231 TLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNM 290

Query: 352 DKRDVVSWNSL-----------------------------------ISSYGVHGYGGKAI 376
             +DVVSWN++                                   IS Y   G G +A+
Sbjct: 291 SVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEAL 350

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF-------ESMRK-----EHMIR 424
            + ++M+  G+ P+ ++ +SVL  C+  G +  GK +          +RK     E+M+ 
Sbjct: 351 GVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVI 410

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV-WGSLLGSCRIHCNVELAERASK 483
                   ++D+  +  K++ A  + + L  +    V W  ++G    H +   A     
Sbjct: 411 NQ------LIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLS 464

Query: 484 RLFE 487
            +FE
Sbjct: 465 EMFE 468



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 125/253 (49%), Gaps = 7/253 (2%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN--VVSWSAMIACYA 264
           K IH  +L  G    +++ + LI  Y   GC+ +A  +  +    +  V  W+++I  Y 
Sbjct: 45  KLIHQKLLSFGIL-TLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG 103

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
            NG A + L LF   +M S    P++ T   V +AC  ++++  G+  H   L  G  S 
Sbjct: 104 DNGCANKCLYLFG--LMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISN 161

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + V +ALV MY+RC  L   + VFD M   DVVSWNS+I SY   G    A+++F  M  
Sbjct: 162 VFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTN 221

Query: 385 H-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
             G  P  I+ V+VL  C+  G    GK L        MI+ ++    C+VD+  +   +
Sbjct: 222 EFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQ-NMFVGNCLVDMYAKCGMM 280

Query: 444 EEAAKIIEDLRIE 456
           +EA  +  ++ ++
Sbjct: 281 DEANTVFSNMSVK 293



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 10/155 (6%)

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD--VVSWNSLI 363
           + Q K+IH  +L  G+ + L + S L++ Y   G L     +       D  V  WNSLI
Sbjct: 41  ISQVKLIHQKLLSFGILT-LNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLI 99

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
            SYG +G   K + +F  M     +P   +F  V  AC     V  G    ES     ++
Sbjct: 100 RSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCG----ESAHALSLV 155

Query: 424 RPSVEHY---ACMVDLLGRANKLEEAAKIIEDLRI 455
              + +      +V +  R   L +A K+ +++ +
Sbjct: 156 TGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSV 190


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/617 (36%), Positives = 350/617 (56%), Gaps = 39/617 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P ++T+  L+ +    +SLS   ++H     +    D F+   LI+ Y     +D A  V
Sbjct: 129 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKV 188

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F   + + +  WN++       G  ++ LEL+++M      +++   T   VL AC    
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESED--VKASHVTMVGVLSACAK-- 244

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV------------------- 238
                L+ G+++ + +  +  N  + +   ++DMY + G +                   
Sbjct: 245 --IRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWT 302

Query: 239 -MYAGFVFSQ-----------MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            M  G+  S+           M  K++V+W+A+I+ Y +NG   EAL +F E+ ++  ++
Sbjct: 303 TMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQK-NM 361

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
             N +T+VS L ACA + ALE G+ IH YI + G+     V SAL+ MY++CG LE  + 
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE 421

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF+ ++KRDV  W+++I    +HG G +A+ +F +M    V P+ ++F +V  ACSH GL
Sbjct: 422 VFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGL 481

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V+E + LF  M   + I P  +HYAC+VD+LGR+  LE+A K IE + I P   VWG+LL
Sbjct: 482 VDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 541

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+C+IH N+ LAE A  RL ELEP N G +VLL+++YA    W+ V  +++ +   GL+K
Sbjct: 542 GACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKK 601

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S IE+   ++ F+S D  HP  E+++  L  +  ++K  GY P+   VL  ++ EE
Sbjct: 602 EPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEE 661

Query: 587 -KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
            KE+ +  HSEKLA+ +GLI+T   + IR+ KNLR+C DCHS  K IS+  ++EI+VRD 
Sbjct: 662 MKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDR 721

Query: 646 NRFHHFRNGVCSCGDYW 662
            RFHHFRNG CSC D+W
Sbjct: 722 YRFHHFRNGQCSCNDFW 738



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 218/448 (48%), Gaps = 51/448 (11%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKL--INVYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
           SL      H H+   G   DP+  +KL  +   S F S++ AR VFD+  +   + WN L
Sbjct: 42  SLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTL 101

Query: 153 FRALTLAGRGEEVLELYRRMNGTG-TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
            RA   A   + VL ++  ++    +    +++T+ +++KA    S     L  G+ +H 
Sbjct: 102 IRA--YASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSS----LSLGQSLHG 155

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
             ++      V +  +LI  Y   G +  A  VF+ +  K+VVSW++MI  + + G   +
Sbjct: 156 MAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDK 215

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           ALELF++  MES D+  + VTMV VL ACA +  LE G+ +  YI    ++  L + +A+
Sbjct: 216 ALELFKK--MESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAM 273

Query: 332 VTMYARCGKLELGQCVFDHMD-------------------------------KRDVVSWN 360
           + MY +CG +E  + +FD M+                               ++D+V+WN
Sbjct: 274 LDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWN 333

Query: 361 SLISSYGVHGYGGKAIQIFKEM-IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           +LIS+Y  +G   +A+ +F E+ +   +  + I+ VS L AC+  G +E G+ +   ++K
Sbjct: 334 ALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKK 393

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH-CNVELA 478
            H IR +    + ++ +  +   LE++ ++   +  +    VW +++G   +H C  E  
Sbjct: 394 -HGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHGCGNE-- 449

Query: 479 ERASKRLFELEPTNAG-NYVLLADVYAA 505
             A    ++++  N   N V   +V+ A
Sbjct: 450 --AVDMFYKMQEANVKPNGVTFTNVFCA 475



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 151/308 (49%), Gaps = 12/308 (3%)

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
           N       ++R  +  +++ CV+       L+  K+ H  ++R G     +  + L  M 
Sbjct: 20  NPNQPTTNNERSRHISLIERCVS-------LRQLKQTHGHMIRTGTFSDPYSASKLFAMA 72

Query: 233 A--RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           A   F  + YA  VF ++   N  +W+ +I  YA       ++  F +M+ ES    PN 
Sbjct: 73  ALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQ-CYPNK 131

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T   +++A A +++L  G+ +HG  ++  + S + V ++L+  Y  CG L+    VF  
Sbjct: 132 YTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTT 191

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           + ++DVVSWNS+I+ +   G   KA+++FK+M    V  S ++ V VL AC+    +E G
Sbjct: 192 IKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFG 251

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           + +  S  +E+ +  ++     M+D+  +   +E+A ++ + +  E     W ++L    
Sbjct: 252 RQVC-SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYA 309

Query: 471 IHCNVELA 478
           I  + E A
Sbjct: 310 ISEDYEAA 317



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 74/146 (50%), Gaps = 7/146 (4%)

Query: 53  NELIQSLCKQGNLRQALDV---LSIEPNPTQHTYELL--LLSCTHHNSLSDALNVHSHLT 107
           N LI +  + G   +AL V   L ++ N   +   L+  L +C    +L     +HS++ 
Sbjct: 333 NALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIK 392

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            +G   +  + + LI++YS    ++ +R VF+   +R ++VW+A+   L + G G E ++
Sbjct: 393 KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVD 452

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKAC 193
           ++ +M      ++ +  T+T V  AC
Sbjct: 453 MFYKMQ--EANVKPNGVTFTNVFCAC 476


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/689 (34%), Positives = 387/689 (56%), Gaps = 39/689 (5%)

Query: 3   ALQSPQTPQLLRSPYH-----TNSIAHLPPKPSSVCC-----CVSLNSSTTPTSLSSRNK 52
           AL S   P+ LR          +S   + PK S+        C SL+ +    +   R +
Sbjct: 151 ALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTR 210

Query: 53  NELIQSLCK-----QGNLRQALD----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVH 103
           N +  S+        GN+ +AL     +L +    T+     +L +C+    + D   +H
Sbjct: 211 NVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIH 270

Query: 104 SHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR--RTIYVWNALFRALTLAGR 161
           S +  +GF+ +  +   ++ +Y    +V++AR VFD      R +  WN +  A     R
Sbjct: 271 SCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDR 330

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV-ASSCGFSLLKHGKEIHASVLRHGYNG 220
           G++ ++LY+RM      +R+D+ TY  +L AC  A   G      G+ +H  ++      
Sbjct: 331 GKDAIQLYQRMQ-----LRADKVTYVSLLSACSSAEDVGL-----GRVLHKQIVNDELEK 380

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            V +   L+ MYA+ G    A  VF +M  ++++SW+ +I+ Y R  +  EA  LF++M+
Sbjct: 381 NVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQML 440

Query: 281 M-----ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
                  S  + P+++  V++L ACA ++ALEQGKM+       GL S   V +A+V +Y
Sbjct: 441 ELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLY 500

Query: 336 ARCGKLELGQCVFDHMDKR-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
            +CG++E G+ +FD +  R DV  WN++I+ Y   G   +A+++F  M   GV P   SF
Sbjct: 501 GKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSF 560

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHM-IRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           VS+L ACSH GL ++GK  F SM  E+  +  +++H+ C+ DLLGR  +L+EA + +E L
Sbjct: 561 VSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKL 620

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
            ++P    W SLL +CR H +++ A+  + +L  LEP  A  YV L+++YA    W  V 
Sbjct: 621 PVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVA 680

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
           +V++ +  +G++K  G S IE+ + M+ F + D+ HP+  ++   L  L ++MKE GYVP
Sbjct: 681 KVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVP 740

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
            TK+VL+ +D +EKER++  HSE+LA+A GLI+T  G  +R+TKNLR+C DCH+ TK IS
Sbjct: 741 DTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLIS 800

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K A ++I+VRD  RFH F++G CSC DYW
Sbjct: 801 KIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 207/400 (51%), Gaps = 22/400 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+   L SC    SL D + +H  + D+  + DP +   L+N+Y    S+  A+ V
Sbjct: 143 PDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRV 202

Query: 138 FDKTRR-RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           F K  R R +  W+ +  A  L G   E L  +R M     GI++ +     +L AC + 
Sbjct: 203 FAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFM--LLLGIKATKSAMVTILSACSSP 260

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM--AVKNVV 254
               +L++ G+ IH+ +   G+   + +   ++ MY R G V  A  VF  M  A+++VV
Sbjct: 261 ----ALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVV 316

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           SW+ M++ Y  N    +A++L++ M + +     + VT VS+L AC++   +  G+++H 
Sbjct: 317 SWNIMLSAYVHNDRGKDAIQLYQRMQLRA-----DKVTYVSLLSACSSAEDVGLGRVLHK 371

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            I+   L+  + V +ALV+MYA+CG     + VFD M++R ++SW ++IS+Y       +
Sbjct: 372 QIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAE 431

Query: 375 AIQIFKEMI-------YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           A  +F++M+          V P  ++FV++L AC+    +E+GKM+ E      +     
Sbjct: 432 ACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKA 491

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
              A +V+L G+  ++EE  +I + +   P  ++W +++ 
Sbjct: 492 VGTA-VVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIA 530



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 82  TYELLLLSCTHHNSLSDALNVHS-HLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           TY  LL  C    +L +   +HS  +  N    +  L   ++++Y+H DS  DA+  FD 
Sbjct: 45  TYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAFDA 104

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
             +R +Y W  L  A  ++G+ +E L    RM     G+R D  T+   L +C       
Sbjct: 105 LEQRNLYSWTGLVAAFAISGQSKETLRALERMR--QDGVRPDAVTFITALGSCGDPES-- 160

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA-VKNVVSWSAM 259
             L+ G  IH  V+         +   L++MY + G + +A  VF++M   +NV+SWS M
Sbjct: 161 --LRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIM 218

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
              +A +G  +EAL  FR M++    +      MV++L AC++ A ++ G++IH  I   
Sbjct: 219 AGAHALHGNVWEALRHFRFMLLLG--IKATKSAMVTILSACSSPALVQDGRLIHSCIALS 276

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQ 377
           G +S L V +A++TMY RCG +E  + VFD MD+  RDVVSWN ++S+Y  +  G  AIQ
Sbjct: 277 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQ 336

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           +++ M    +    +++VS+L ACS A  V  G++L + +  + +
Sbjct: 337 LYQRM---QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDEL 378



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 96/202 (47%), Gaps = 4/202 (1%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL-DSILPVVSALVTMYARCG 339
           +E   +   + T   +LQ CA   AL +G+ IH   ++  L    L + + +V+MYA C 
Sbjct: 34  LEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCD 93

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
                +  FD +++R++ SW  L++++ + G   + ++  + M   GV P  ++F++ LG
Sbjct: 94  SPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALG 153

Query: 400 ACSHAGLVEEGKMLFESMRKEHM-IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
           +C     + +G  + + +    + I P V +   ++++  +   L  A ++   +     
Sbjct: 154 SCGDPESLRDGIRIHQMVVDSRLEIDPKVSN--ALLNMYKKCGSLSHAKRVFAKMERTRN 211

Query: 459 PKVWGSLLGSCRIHCNVELAER 480
              W  + G+  +H NV  A R
Sbjct: 212 VISWSIMAGAHALHGNVWEALR 233


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/578 (38%), Positives = 347/578 (60%), Gaps = 13/578 (2%)

Query: 91  THHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDKTRRRTIYV 148
           TH  S+S     H+ L       +P   +KLI+    SH   ++ AR +F + +    ++
Sbjct: 19  THCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFI 78

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
            N + R    +    E + LY  M     G+  D +TY +VL AC         +K G+ 
Sbjct: 79  CNTMIRGYARSQNPYEAVSLYYFM--VERGVPVDNYTYPFVLAACAR----LGAVKLGRR 132

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
            H  VL++G+   + ++  LI  Y   G    A  VF +  V++VV+W+ MI  +   G+
Sbjct: 133 FHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGL 192

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY---ILRRGLDSIL 325
           + +A +L  EM  +  +L P+ VTMVS++ ACA L  LE+GK +H Y   + +  ++  L
Sbjct: 193 SEKAFDLLDEMT-KLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDL 251

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            + +ALV MYA+CG ++L   VF  M  R+V +WN+LI    +HG+G  AI +F +M + 
Sbjct: 252 VLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHD 311

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
            + P  ++F+++L ACSHAGLV+EG  +F++M+ +  I P +EHY C+VDLL RA K+++
Sbjct: 312 KLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDD 371

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A   IE++ I+    +W +LLG+CR   + +LAE+  +R+ ELEP + G YV+L+++YA 
Sbjct: 372 ALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAG 431

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
              WD   ++++ ++ +G++K PG S IE+   ++ FV+ D  H Q EQ++A++  ++  
Sbjct: 432 VSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRR 491

Query: 566 MK-EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           +  + G+VP T  VL+D++ EEKE  +  HSEKLA+A GLI+T  G  IRI KNLR+C D
Sbjct: 492 VNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCND 551

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CHSF K  SK  N+EI+ RD +RFHHF+ G CSC D+W
Sbjct: 552 CHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 144/309 (46%), Gaps = 12/309 (3%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
            +TY  +L +C    ++      H  +  NGF  D F++  LI  Y +  S   A  VFD
Sbjct: 111 NYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFD 170

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           ++  R +  WN +  A    G  E+  +L   M      +R D  T   ++ AC      
Sbjct: 171 ESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDN-LRPDEVTMVSLVPACAQ---- 225

Query: 200 FSLLKHGKEIHA---SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
              L+ GK +H+    + +   N  + + T L+DMYA+ G +  A  VF +M V+NV +W
Sbjct: 226 LGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTW 285

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGY 315
           +A+I   A +G   +A+ LF +  ME   L P+ VT +++L AC+    +++G  M    
Sbjct: 286 NALIGGLAMHGHGEDAISLFDQ--MEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAM 343

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGK 374
             +  ++  +     +V +  R  K++      ++M  K + V W +L+ +    G+   
Sbjct: 344 KNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDL 403

Query: 375 AIQIFKEMI 383
           A +I + +I
Sbjct: 404 AEKIGRRVI 412


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/662 (35%), Positives = 359/662 (54%), Gaps = 70/662 (10%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           ++  LD+++   +PTQ T   +L SC    +      VHS +   G      +   ++N+
Sbjct: 147 IKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNM 206

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM------------ 172
           Y      + AR VF++   R++  WNA+       GR +  L L+  M            
Sbjct: 207 YGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVI 266

Query: 173 ---NGTGTGIRS---------------DRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
              N  G   ++               D FT T VL AC        ++  GK++HA +L
Sbjct: 267 AGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSAC----ANLGMVSIGKQVHAYIL 322

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYA----------------------GFV-------- 244
           R     I  +   LI MYA+ G V  A                      G+V        
Sbjct: 323 RSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHA 382

Query: 245 ---FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
              F  M+ ++VV+W+AMI  Y +NG   EA+ELFR MI    +  PNS T+ +VL  CA
Sbjct: 383 REMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPE--PNSYTVAAVLSVCA 440

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWN 360
           +LA LE GK IH   +R   +    V +++VTMYAR G L   + VFD +  +++ V+W 
Sbjct: 441 SLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWT 500

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           S+I +   HG G  A+ +F+EM+  GV P  I+FV VL AC+H G V+EGK  F+ ++ +
Sbjct: 501 SMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDK 560

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           H I P + HYACMVDLL RA    EA + I+ + +EP    WGSLL +CR+H N +LAE 
Sbjct: 561 HGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAEL 620

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
           A+++L  ++P N+G Y  L++VY+A   W++  ++ +  + + ++K  G S   +  +++
Sbjct: 621 AAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVH 680

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
            F + D  HPQ + ++     +  ++K+ G+VP  + VL+D+D E KE ++  HSEKLA+
Sbjct: 681 VFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAI 740

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           AFGL++T +  T+RI KNLR+C DCH+  KFISK A++EI++RD  RFHHF++G CSC D
Sbjct: 741 AFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKD 800

Query: 661 YW 662
           YW
Sbjct: 801 YW 802



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 190/427 (44%), Gaps = 80/427 (18%)

Query: 111 FDQDP------FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
           FD+ P      F    L+++Y+    + DAR VF +   R    W  +   L   GR  E
Sbjct: 86  FDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGE 145

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
            ++++  M     G+   +FT T VL +C A+         G+++H+ V++ G +  V +
Sbjct: 146 AIKMFLDM--VTDGLSPTQFTLTNVLSSCAATEA----RGVGRKVHSFVVKLGLSSCVPV 199

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNV------------------------------- 253
             ++++MY + G    A  VF +M  ++V                               
Sbjct: 200 ANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTI 259

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+A+IA Y +NG+  +AL  F  M+  S  + P+  T+ SVL ACA L  +  GK +H
Sbjct: 260 VSWNAVIAGYNQNGLNAKALWFFSRMLSYS-TMAPDEFTITSVLSACANLGMVSIGKQVH 318

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCV-------------------------- 347
            YILR  +  I  V +AL++MYA+ G +E  + V                          
Sbjct: 319 AYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGD 378

Query: 348 -------FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
                  FD M  RDVV+W ++I  Y  +G+  +A+++F+ MI  G  P+  +  +VL  
Sbjct: 379 MKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSV 438

Query: 401 CSHAGLVEEGKMLF-ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           C+    +E GK +  +++R       SV +   +V +  R+  L  A ++ + +      
Sbjct: 439 CASLACLEYGKQIHCKAIRSLQEQSSSVSN--SIVTMYARSGSLPWARRVFDRVHWRKET 496

Query: 460 KVWGSLL 466
             W S++
Sbjct: 497 VTWTSMI 503



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 38/145 (26%)

Query: 296 VLQACAALAALEQGKMIHGYILRRGL--------------------------------DS 323
           +LQ C   A    G+ IH   ++ GL                                D 
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88

Query: 324 I------LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           I      +   ++L+++YA+ G+L   + VF  M +RD VSW  ++      G  G+AI+
Sbjct: 89  IPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIK 148

Query: 378 IFKEMIYHGVSPSPISFVSVLGACS 402
           +F +M+  G+SP+  +  +VL +C+
Sbjct: 149 MFLDMVTDGLSPTQFTLTNVLSSCA 173


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/616 (37%), Positives = 353/616 (57%), Gaps = 44/616 (7%)

Query: 84  ELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY--SHFDSVDDARHVFDKT 141
           +L L S     S++     H+HL   G    P    KL+ V   S F S+  A  +FD+ 
Sbjct: 16  QLQLFSLESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQI 75

Query: 142 RRRTIYVWNALFRA-LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
            +  ++++N + +A   +       + ++  M    +G   +R+T+ +V KAC     G 
Sbjct: 76  PKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRV-SGFLPNRYTFVFVFKAC---GNGL 131

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV--------------------MY 240
            +L+ G++I    ++ G    + +   +I MYA +G V                    M 
Sbjct: 132 GVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMI 190

Query: 241 AGFV-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
            G+V           F +M+ ++VVSW+ +IA Y + G   EAL+LF EM+       PN
Sbjct: 191 GGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPP--PN 248

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF- 348
             T+ S L ACA L AL+QG+ IH YI +  +     ++++L+ MYA+CG+++    VF 
Sbjct: 249 EFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFH 308

Query: 349 -DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
            ++  K  V  WN++I  Y +HG   +AI +F++M    VSP+ ++FV++L ACSH  LV
Sbjct: 309 DEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLV 368

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           EEG+  F+SM   + I P +EHY CMVDLLGR+  L+EA + + ++ + P   +WG+LLG
Sbjct: 369 EEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLG 428

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           +CRIH ++E  +R  K + EL+  + G +VLLA++Y+A+  WDE K V++ +E  G +K 
Sbjct: 429 ACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKT 488

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE- 586
           PG S IE+    + F+  D  HPQ +QL+  L  ++ ++K  GYVP+   VL D+D EE 
Sbjct: 489 PGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEED 548

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE  +  HSEKLA+AFGLINT  G  IRI KNLR+C DCH  TKFISK   +EI+VRD  
Sbjct: 549 KETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRI 608

Query: 647 RFHHFRNGVCSCGDYW 662
           R+HHF++G CSC DYW
Sbjct: 609 RYHHFKDGFCSCKDYW 624



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 153/348 (43%), Gaps = 56/348 (16%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P ++T+  +  +C +   + +   +  H    G + + F+   +I +Y+++  VD+AR V
Sbjct: 115 PNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRV 174

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGE---------------------------------E 164
           FD +  + +Y WN +       G GE                                 E
Sbjct: 175 FDWSLDQDLYSWNIMIGGYV--GSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKE 232

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
            L+L+  M    TG   + FT    L AC         L  G+ IH  + +        +
Sbjct: 233 ALDLFHEM--LQTGPPPNEFTLASALAAC----ANLVALDQGRWIHVYIDKSEIKMNERL 286

Query: 225 MTTLIDMYARFGCVMYAGFVF-SQMAVK-NVVSWSAMIACYARNGMAFEALELFREMIME 282
           + +L+DMYA+ G + +A  VF  +  +K  V  W+AMI  YA +G + EA++LF +M +E
Sbjct: 287 LASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVE 346

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR----GLDSILPVVSALVTMYARC 338
              + PN VT V++L AC+    +E+G+   GY        G++  +     +V +  R 
Sbjct: 347 K--VSPNKVTFVALLNACSHGKLVEEGR---GYFKSMASSYGIEPEIEHYGCMVDLLGRS 401

Query: 339 GKL-ELGQCVFDHMDKRDVVSWNSLISSYGVHG---YGGKAIQIFKEM 382
           G L E  + VF+     D   W +L+ +  +H     G +  +I KE+
Sbjct: 402 GLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKEL 449


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/633 (35%), Positives = 362/633 (57%), Gaps = 35/633 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N ++    + G +++A ++    P     ++  +L +   +  + DA      L ++  D
Sbjct: 65  NAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDA----RRLFESKAD 120

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            +      ++  Y   + + DAR +FD+   R    WN +       G   E+LE  R  
Sbjct: 121 WELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNG---ELLEAQRLF 177

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSC------GFSLLKHGKEIHASVLRHGYNGI----- 221
             +      D FT+T ++   V +         F  +     +  + +  GY        
Sbjct: 178 EESPV---RDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQ 234

Query: 222 ------------VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
                       V    T+I  YA+ G +  A   F +M  ++ +SW+A+IA YA++G  
Sbjct: 235 ARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYG 294

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EAL LF EM  +   L  N  T  S L  CA +AALE GK +HG +++ GL+S   V +
Sbjct: 295 EEALHLFVEMKRDGERL--NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGN 352

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           AL+ MY +CG ++    VF+ +++++VVSWN++I+ Y  HG+G +A+ +F+ M   G+ P
Sbjct: 353 ALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILP 412

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
             ++ V VL ACSH GLV++G   F SM +++ I  + +HY CM+DLLGRA +L++A  +
Sbjct: 413 DDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNL 472

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
           ++++  EP    WG+LLG+ RIH N EL E+A+K +FE+EP N+G YVLL+++YAA+  W
Sbjct: 473 MKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRW 532

Query: 510 DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569
            +V R++  +  RG++KVPG S +EV+ K+++F   D  HP+ ++++  L  L  +MK++
Sbjct: 533 GDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKE 592

Query: 570 GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
           GYV  TK+VL+D++ EEK  ++  HSEKLAVAFG++    G  IR+ KNLR+CEDCH+  
Sbjct: 593 GYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAM 652

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K ISK   + I++RD +RFHHF  G CSCGDYW
Sbjct: 653 KHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 138/308 (44%), Gaps = 30/308 (9%)

Query: 111 FDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FDQ P         +++ Y+    V +A+ +FD+   +    WN +  A    GR E+  
Sbjct: 53  FDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDAR 112

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIM 225
            L+         I  +     YV +  +  + G F  +    E+                
Sbjct: 113 RLFES-KADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVS--------------W 157

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
            T+I  YA+ G ++ A  +F +  V++V +W+AM++ Y +NGM  EA  +F  M  +   
Sbjct: 158 NTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEK--- 214

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
              NSV+  +++        ++Q + +   +  + + S     + ++T YA+ G +   +
Sbjct: 215 ---NSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSW----NTMITGYAQNGDIAQAR 267

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
             FD M +RD +SW ++I+ Y   GYG +A+ +F EM   G   +  +F S L  C+   
Sbjct: 268 NFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIA 327

Query: 406 LVEEGKML 413
            +E GK +
Sbjct: 328 ALELGKQV 335



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 19/193 (9%)

Query: 236 GCVMY-----AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           GCV Y     A  +F QM  ++VVSW+AM++ YA+NG   EA E+F EM       C NS
Sbjct: 39  GCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP------CKNS 92

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           ++   +L A      +E  +     +     D  L   + ++  Y +  +L   + +FD 
Sbjct: 93  ISWNGMLAAYVQNGRIEDARR----LFESKADWELISWNCMMGGYVKRNRLVDARGIFDR 148

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M +RD VSWN++IS Y  +G   +A ++F+E     V     ++ +++      G+++E 
Sbjct: 149 MPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEA 204

Query: 411 KMLFESMRKEHMI 423
           + +F+ M +++ +
Sbjct: 205 RRVFDGMPEKNSV 217



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 15/180 (8%)

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           R   L   + +FD M +RDVVSWN+++S Y  +GY  +A +IF EM       + IS+  
Sbjct: 42  RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM----PCKNSISWNG 97

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           +L A    G +E+ + LFES     +I      + CM+    + N+L +A  I  D   E
Sbjct: 98  MLAAYVQNGRIEDARRLFESKADWELI-----SWNCMMGGYVKRNRLVDARGIF-DRMPE 151

Query: 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT-NAGNYVLLADVYAAADMWDEVKRV 515
                W +++       N EL E  ++RLFE  P  +   +  +   Y    M DE +RV
Sbjct: 152 RDEVSWNTMISG--YAQNGELLE--AQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRV 207


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/630 (36%), Positives = 363/630 (57%), Gaps = 19/630 (3%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS 95
           V+ NS  +  SL   + +E+ + L +  N          + +P   T   +L +    NS
Sbjct: 186 VAWNSMISGFSLHEGSYDEVARLLVQMQN----------DVSPNSSTIVGVLPAVAQVNS 235

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR-RRTIYVWNALFR 154
           L     +H      GF  D  + T +++VY     +D AR +FD     +    W+A+  
Sbjct: 236 LRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVG 295

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG-FSLLKHGKEIHASV 213
           A  +     E LEL+ ++      ++ D    + V  A V   C   + L  G  +H   
Sbjct: 296 AYVVCDFMREALELFCQL----LMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYA 351

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           ++ G+   + +  TL+ MYA+ G +  A   F++M +++ VS++A+I+ Y +NG + E L
Sbjct: 352 IKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGL 411

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
            +F EM +   +  P   T+ SVL ACA LA L  G   H Y +  G  +   + +AL+ 
Sbjct: 412 RMFLEMQLSGIN--PEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALID 469

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MYA+CGK++  + VFD M KR +VSWN++I +YG+HG G +A+ +F  M   G+ P  ++
Sbjct: 470 MYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVT 529

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           F+ ++ ACSH+GLV EGK  F +M ++  I P +EHYACMVDLL RA   +E    IE +
Sbjct: 530 FICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKM 589

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
            +EP  +VWG+LL +CR++ NVEL E  SK++ +L P + GN+VLL+++Y+A   WD+  
Sbjct: 590 PLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAA 649

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD-EFHPQFEQLHALLINLSAEMKEKGYV 572
           +V+   + +G +K PG S IE+   +++F+      HPQ  Q+   L  L  EMK  GY 
Sbjct: 650 QVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQ 709

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
            ++  V  D++ EEKER++L HSEKLA+AFG+++ S  + I +TKNLR+C DCH+  KFI
Sbjct: 710 AESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFI 769

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           S    ++I VRD +RFHHF++G+C+CGD+W
Sbjct: 770 SLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 217/432 (50%), Gaps = 26/432 (6%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI++    G   +A+D+    L     P + T+  +L +C+     S+   +H  +  
Sbjct: 88  NLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKR 147

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL-AGRGEEVLE 167
              + + ++ T L++ Y+    +DDA+ VFDK  +R +  WN++    +L  G  +EV  
Sbjct: 148 LRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVAR 207

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L  +M      +  +  T   VL A    +     L+HGKEIH   +R G+ G V + T 
Sbjct: 208 LLVQMQ---NDVSPNSSTIVGVLPAVAQVNS----LRHGKEIHGFCVRRGFVGDVVVGTG 260

Query: 228 LIDMYARFGCVMYAGFVFSQMA-VKNVVSWSAMIACYARNGMAFEALELFREMIMESHD- 285
           ++D+Y +  C+ YA  +F  M  VKN V+WSAM+  Y       EALELF +++M   D 
Sbjct: 261 ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDV 320

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           +  ++VT+ +V++ CA L  L  G  +H Y ++ G    L V + L++MYA+CG +    
Sbjct: 321 IVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAM 380

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
             F+ MD RD VS+ ++IS Y  +G   + +++F EM   G++P   +  SVL AC+H  
Sbjct: 381 RFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLA 440

Query: 406 LVEEGK-----MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
            +  G       +      + MI  +      ++D+  +  K++ A K+ + +  + G  
Sbjct: 441 GLHYGSCSHCYAIICGFTADTMICNA------LIDMYAKCGKIDTARKVFDRMH-KRGIV 493

Query: 461 VWGSLLGSCRIH 472
            W +++ +  IH
Sbjct: 494 SWNTMIIAYGIH 505



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 186/345 (53%), Gaps = 27/345 (7%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTD----------NGFDQDPFLVTKLINVYSHFDSVDDA 134
           +LL SC    SL     +H HL              FD  PF   KL+++Y     +  A
Sbjct: 14  VLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDV-PF--EKLVDLYIACSELKIA 70

Query: 135 RHVFDKT--RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           RHVFDK   R + + +WN L RA    G  EE ++LY +M   G GI  +RFT+ +VLKA
Sbjct: 71  RHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKM--LGYGITPNRFTFPFVLKA 128

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
           C A          G+EIH  + R      V++ T L+D YA+ GC+  A  VF +M  ++
Sbjct: 129 CSA----LKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRD 184

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           VV+W++MI+ ++ +  +++  E+ R ++   +D+ PNS T+V VL A A + +L  GK I
Sbjct: 185 VVAWNSMISGFSLHEGSYD--EVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEI 242

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGY 371
           HG+ +RRG    + V + ++ +Y +C  ++  + +FD M   ++ V+W++++ +Y V  +
Sbjct: 243 HGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDF 302

Query: 372 GGKAIQIFKEMIY---HGVSPSPISFVSVLGACSHAGLVEEGKML 413
             +A+++F +++      +  S ++  +V+  C++   +  G  L
Sbjct: 303 MREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCL 347



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 146/291 (50%), Gaps = 16/291 (5%)

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLR-----HGYN--GIVHIMTTLIDMYARFGCVM 239
           T +L++C+ S   F     GK IH  +L+     H  N          L+D+Y     + 
Sbjct: 13  TVLLESCIQSKSLF----RGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELK 68

Query: 240 YAGFVFSQMA--VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
            A  VF +M    KNVV W+ +I  YA NG   EA++L+ +M+   + + PN  T   VL
Sbjct: 69  IARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKML--GYGITPNRFTFPFVL 126

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           +AC+AL    +G+ IH  I R  L+S + V +ALV  YA+CG L+  + VFD M KRDVV
Sbjct: 127 KACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVV 186

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           +WNS+IS + +H      +      + + VSP+  + V VL A +    +  GK +    
Sbjct: 187 AWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFC 246

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            +   +   V     ++D+ G+   ++ A +I + + I      W +++G+
Sbjct: 247 VRRGFVGDVVVGTG-ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/619 (36%), Positives = 353/619 (57%), Gaps = 20/619 (3%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEP---NPTQHTYELLLLSCTHHNSLSDALNVHSH 105
           N LI    + G+ R AL    D++S  P    P   T+   L +CT    +S    + + 
Sbjct: 129 NALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEAR 188

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
              +G+  D  +   LIN+YS   S++ AR VFD+ + R +  WN +       G   + 
Sbjct: 189 TVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQA 248

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           LEL++RM       + +  T+  +L AC         L+ G+ IH  V   GY   + I 
Sbjct: 249 LELFQRMGPNDP--KPNVVTFIGLLTACT----NLEDLEQGRAIHRKVREDGYESDLVIG 302

Query: 226 TTLIDMYARFGCVMY-AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
             L++MY +    +  A  VF +M  ++V++W+ +I  Y + G A +AL++F++M +E  
Sbjct: 303 NVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLE-- 360

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
           ++ PN +T+ +VL ACA L A  QGK +H  I      + + + ++L+ MY RCG L+  
Sbjct: 361 NVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDT 420

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
             VF  +  + +VSW++LI++Y  HG+    ++ F E++  G++   ++ VS L ACSH 
Sbjct: 421 VGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHG 480

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+++EG   F SM  +H + P   H+ CMVDLL RA +LE A  +I D+   P    W S
Sbjct: 481 GMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTS 540

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYV-LLADVYAAADMWDEVKRVKRLLEARG 523
           LL  C++H + + A R + +LFELE  +  + V LL++VYA A  WD+V++ +    AR 
Sbjct: 541 LLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRNRRAAR- 599

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
             K PG S IE+   ++ FV+ D+ HP+ E + A +  LS +MK+ GYVP  ++VL+++ 
Sbjct: 600 --KNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVK 657

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            EEKE+++  HSEKLA+A+GLI+T  G  + I KNLR C DCH+  KFIS+   ++I+VR
Sbjct: 658 EEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVR 717

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D  RFHHF NG CSC DYW
Sbjct: 718 DSTRFHHFENGSCSCKDYW 736



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 191/364 (52%), Gaps = 13/364 (3%)

Query: 55  LIQSLCKQGNLRQALDV---LSIEP-NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           ++ +  + G+ R+AL     + +E   P    + + +  C+    L     +H+ + +  
Sbjct: 29  IVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETR 88

Query: 111 F-DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
             + D  L T LI +Y+    ++ AR  FD+  ++T+  WNAL    +  G     L++Y
Sbjct: 89  LLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIY 148

Query: 170 RRM-NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + M + +  G++ D  T++  L AC         +  G+EI A  +  GY     +   L
Sbjct: 149 QDMVSKSPEGMKPDAITFSSALYACTV----VGDISQGREIEARTVASGYASDSIVQNAL 204

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I+MY++ G +  A  VF ++  ++V++W+ MI+ YA+ G A +ALELF+   M  +D  P
Sbjct: 205 INMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQR--MGPNDPKP 262

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC-GKLELGQCV 347
           N VT + +L AC  L  LEQG+ IH  +   G +S L + + L+ MY +C   LE  + V
Sbjct: 263 NVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQV 322

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F+ M  RDV++WN LI +Y  +G    A+ IFK+M    V+P+ I+  +VL AC+  G  
Sbjct: 323 FERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAK 382

Query: 408 EEGK 411
            +GK
Sbjct: 383 RQGK 386



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 171/333 (51%), Gaps = 8/333 (2%)

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +Y    SV DA  VF          W  +  A    G   E L  YRRM     G+R D 
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRM--VLEGLRPDG 58

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM-TTLIDMYARFGCVMYAG 242
             +   +  C +S      LK G+ +HA +L         I+ T LI MYAR   +  A 
Sbjct: 59  AMFVVAIGVCSSSKD----LKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELAR 114

Query: 243 FVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD-LCPNSVTMVSVLQACA 301
             F +M  K +V+W+A+IA Y+RNG    AL+++++M+ +S + + P+++T  S L AC 
Sbjct: 115 KTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACT 174

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            +  + QG+ I    +  G  S   V +AL+ MY++CG LE  + VFD +  RDV++WN+
Sbjct: 175 VVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNT 234

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +IS Y   G   +A+++F+ M  +   P+ ++F+ +L AC++   +E+G+ +   +R++ 
Sbjct: 235 MISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDG 294

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
                V     +      ++ LEEA ++ E +R
Sbjct: 295 YESDLVIGNVLLNMYTKCSSSLEEARQVFERMR 327


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/625 (37%), Positives = 368/625 (58%), Gaps = 48/625 (7%)

Query: 72  LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS--HFD 129
           LS E N  Q  +  LL  C++   L     +H  +   G   D    +KL+   +  +  
Sbjct: 12  LSSESNAAQTLH--LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSG 66

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           S+  AR VFD+  R   ++WN + R  + +   EE L LY  M      +  + +T+ ++
Sbjct: 67  SLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHM--LYHSVPHNAYTFPFL 124

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           LKAC + S      +  ++IHA +++ G+   ++   +L+++Y++ G +  A  +F Q+ 
Sbjct: 125 LKACSSMSAS----EETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVD 180

Query: 250 VKNVVSWSAMIACYARNG---MAFE----------------------------ALELFRE 278
            ++ VSW++MI  Y + G   MA+E                            AL LF  
Sbjct: 181 QRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHR 240

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS-ALVTMYAR 337
           M  ++  +  ++V +VS LQACA L  L+QGK IH YI +  ++ I P++   L+ MYA+
Sbjct: 241 M--QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIE-IDPILGCVLIDMYAK 297

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           CG LE    VF  M+++ V  W ++IS Y +HG G +A++ F +M   GV P+ ++F  +
Sbjct: 298 CGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGI 357

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           L ACSHAGLV E K+LFESM + H  +PS+EHY CMVDLLGRA  L+EA ++IE++ ++P
Sbjct: 358 LTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKP 417

Query: 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
              +WG+LL +C IH N+EL ++  K L +++P + G Y+ LA ++AAA  W++  RV+R
Sbjct: 418 NAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRR 477

Query: 518 LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKV 577
            ++ +G+ K+PG S I V    + F++ DE HPQ +++  +L  +   ++E+GY P+   
Sbjct: 478 QMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGD 537

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           +L DL+ +EKE  +  HSEKLAV FGLI+T  G TIRI KNLR+CEDCH+  K ISK   
Sbjct: 538 LLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYA 597

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +EIL+RD  RFH F++G C+CGDYW
Sbjct: 598 REILMRDRTRFHLFKDGNCTCGDYW 622


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/598 (39%), Positives = 350/598 (58%), Gaps = 23/598 (3%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS----V 131
           P P QH     L  CT   SL     +H+     G    P LVT+L+ + +  D+    +
Sbjct: 21  PPPQQHPVLSHLPHCT---SLRTLAQLHAAAVKAGLAAHPALVTRLLTLCTGPDAGPAHL 77

Query: 132 DDARHVFDKTRRRTIYVW-NALFRALTLAG-----RGEEVLELYRRMNGTGTGIRSDRFT 185
             AR VFD+       VW N L R    +           + ++ RM     G+  D +T
Sbjct: 78  AYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRM--LEEGVAPDTYT 135

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
           +  +LKAC A+  G    + G++ HA  ++ G     ++  TLI+MYA  G    A  +F
Sbjct: 136 FVSLLKACAAARAG----EEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMF 191

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
                  VVS++AMIA   R+    EAL LFREM  +   L P SVT++SVL ACA L A
Sbjct: 192 GGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREM--QGKGLKPTSVTVISVLSACALLGA 249

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           LE G+ +H Y+ + GL S++ V +AL+ MYA+CG LE    VF  M+ +D  +W+ +I +
Sbjct: 250 LELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVA 309

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           Y  HGYG +AI +F+EM   G+ P  I+F+ VL ACSH+GLV EG   F+ M K+H I P
Sbjct: 310 YANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDM-KDHGIVP 368

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
            ++HY C+ DLL R+ +LE A K I++L I P P +W +LL +C  H + EL +R  +R+
Sbjct: 369 GIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFERI 428

Query: 486 FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSV 545
            +L+ ++ G+YV+ +++ A    W+E+  V++L+  +G+ KVPG S IE+   ++ F + 
Sbjct: 429 LKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAG 488

Query: 546 DEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG-HSEKLAVAFGL 604
           D  HP+ ++   ++  +  ++K  GYVP T  V +    EE++ I L  HSEKLA+AFGL
Sbjct: 489 DGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGL 548

Query: 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +NT+ G T+R+ KNLR+C DCHS  K +S   N+ I++RD+NRFHHF  G+CSCGDYW
Sbjct: 549 LNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/619 (36%), Positives = 354/619 (57%), Gaps = 20/619 (3%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEP---NPTQHTYELLLLSCTHHNSLSDALNVHSH 105
           N LI    + G+ R AL    D++S  P    P   T+   L +C+    +S    + + 
Sbjct: 129 NALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEAR 188

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
              +G+  D  +   LIN+YS   S++ AR VFD+ + R +  WN +       G   + 
Sbjct: 189 TVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQA 248

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           LEL++RM       + +  T+  +L AC         L+ G+ IH  V  HGY   + I 
Sbjct: 249 LELFQRMGPNDP--KPNVVTFIGLLTACT----NLEDLEQGRAIHRKVKEHGYESDLVIG 302

Query: 226 TTLIDMYARFGCVMY-AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
             L++MY +    +  A  VF ++  ++V++W+ +I  Y + G A +AL++F++M +E  
Sbjct: 303 NVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLE-- 360

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
           ++ PN +T+ +VL ACA L A  QGK +H  I      + + + ++L+ MY RCG L+  
Sbjct: 361 NVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDT 420

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
             VF  +  + +VSW++LI++Y  HG+    ++ F E++  G++   ++ VS L ACSH 
Sbjct: 421 VGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHG 480

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+++EG   F SM  +H + P   H+ CMVDLL RA +LE A  +I D+   P    W S
Sbjct: 481 GMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTS 540

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYV-LLADVYAAADMWDEVKRVKRLLEARG 523
           LL  C++H + + A R + +LFELE  +  + V LL++VYA A  WD+V++ +    AR 
Sbjct: 541 LLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRNRRAAR- 599

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
             K PG S IE+   ++ FV+ D+ HP+ E + A +  LS +MK+ GYVP  ++VL+++ 
Sbjct: 600 --KNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVK 657

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            EEKE+++  HSEKLA+A+GLI+T  G  + I KNLR C DCH+  KFIS+   ++I+VR
Sbjct: 658 EEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVR 717

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D  RFHHF NG CSC DYW
Sbjct: 718 DSTRFHHFENGSCSCKDYW 736



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 191/364 (52%), Gaps = 13/364 (3%)

Query: 55  LIQSLCKQGNLRQALDV---LSIEP-NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           ++ +  + G+ R+AL     + +E   P    + + +  C+    L     +H+ + +  
Sbjct: 29  IVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETQ 88

Query: 111 F-DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
             + D  L T LI +Y+    ++ AR  FD+  ++T+  WNAL    +  G     L++Y
Sbjct: 89  LLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIY 148

Query: 170 RRM-NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + M + +  G++ D  T++  L AC         +  G+EI A  +  GY     +   L
Sbjct: 149 QDMVSKSPEGMKPDAITFSSALYACSV----VGDISQGREIEARTVASGYASDSIVQNAL 204

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I+MY++ G +  A  VF ++  ++V++W+ MI+ YA+ G A +ALELF+   M  +D  P
Sbjct: 205 INMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQR--MGPNDPKP 262

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC-GKLELGQCV 347
           N VT + +L AC  L  LEQG+ IH  +   G +S L + + L+ MY +C   LE  + V
Sbjct: 263 NVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQV 322

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F+ +  RDV++WN LI +Y  +G    A+ IFK+M    V+P+ I+  +VL AC+  G  
Sbjct: 323 FERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAK 382

Query: 408 EEGK 411
            +GK
Sbjct: 383 RQGK 386



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 176/334 (52%), Gaps = 10/334 (2%)

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +Y    SV DA  VF          W  +  A    G   E L  YRRM     G+R D 
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRM--VLEGLRPDG 58

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM-TTLIDMYARFGCVMYAG 242
             +   +  C +S      LK G+ +HA +L         I+ T LI MYAR   +  A 
Sbjct: 59  AMFVVAIGVCSSSKD----LKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELAR 114

Query: 243 FVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD-LCPNSVTMVSVLQACA 301
             F +M  K +V+W+A+IA Y+RNG    AL+++++M+ +S + + P+++T  S L AC+
Sbjct: 115 KTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACS 174

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            +  + QG+ I    +  G  S   V +AL+ MY++CG LE  + VFD +  RDV++WN+
Sbjct: 175 VVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNT 234

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +IS Y   G   +A+++F+ M  +   P+ ++F+ +L AC++   +E+G+ +   + KEH
Sbjct: 235 MISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKV-KEH 293

Query: 422 MIRPSVEHYACMVDLLGR-ANKLEEAAKIIEDLR 454
                +     ++++  + ++ LEEA ++ E LR
Sbjct: 294 GYESDLVIGNVLLNMYTKCSSSLEEARQVFERLR 327


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/628 (37%), Positives = 364/628 (57%), Gaps = 20/628 (3%)

Query: 42  TTPTSLSSRNKNELIQS---LCKQGNLRQALDVL-SIEPN---PTQHTYELLLLSCTHHN 94
           T   S SS ++  L+     LC Q +L +A+  + S++ +       TY  L+  C  + 
Sbjct: 16  TLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNR 75

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           ++ +   +  HL  NG     FLV  LIN+Y  F+ ++DA  +FD+  +R +  W  +  
Sbjct: 76  AVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMIS 135

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
           A +     ++ LEL   M      +R + +TY+ VL++C   S         + +H  ++
Sbjct: 136 AYSKCKIHQKALELLVLM--LRDNVRPNVYTYSSVLRSCNGMS-------DVRMLHCGII 186

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           + G    V + + LID++A+ G    A  VF +M   + + W+++I  +A+N  +  ALE
Sbjct: 187 KEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALE 246

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           LF+ M  +         T+ SVL+AC  LA LE G   H +I++   D IL   +ALV M
Sbjct: 247 LFKRM--KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILN--NALVDM 302

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y +CG LE    VF+ M +RDV++W+++IS    +GY  +A+++F+ M   G  P+ I+ 
Sbjct: 303 YCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITI 362

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           V VL ACSHAGL+E+G   F SM+K + I P  EHY CM+DLLG+A KL++A K++ ++ 
Sbjct: 363 VGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEME 422

Query: 455 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514
            EP    W +LLG+CR+  N+ LAE A+K++  L+P +AG Y LL+++YA +  WD V+ 
Sbjct: 423 CEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEE 482

Query: 515 VKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQ 574
           ++  +  RG++K PG S IEV +++++F+  D  HPQ  ++   L  L   +   GYVP+
Sbjct: 483 IRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPE 542

Query: 575 TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
           T  VL DL+ E+ E  +  HSEKLA+AFGL+     + IRI KNLR+C DCH F K  SK
Sbjct: 543 TNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASK 602

Query: 635 FANKEILVRDVNRFHHFRNGVCSCGDYW 662
              + I++R   R+HHF++G CSCGDYW
Sbjct: 603 LEIRSIVIRGPIRYHHFQDGKCSCGDYW 630


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/633 (36%), Positives = 359/633 (56%), Gaps = 35/633 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N ++    + G++ +A DV    P+    ++  LL +      L +A      L ++  D
Sbjct: 130 NAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEA----RRLFESKSD 185

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            +      L+  Y   + + DAR +FD+   R +  WN +       G   +   L+   
Sbjct: 186 WELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEE- 244

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSC------GFSLLKHGKEIHASVLRHGYNGIVHI-- 224
               + +R D FT+T ++ A V           F  +   +E+  +V+  GY     +  
Sbjct: 245 ----SPVR-DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDM 299

Query: 225 ---------------MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
                             +I  Y + G +  A  +F  M  ++ VSW+A+IA YA+NG+ 
Sbjct: 300 GRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLY 359

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EA+ +  EM  +   L  N  T    L ACA +AALE GK +HG ++R G +    V +
Sbjct: 360 EEAMNMLVEMKRDGESL--NRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGN 417

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           ALV MY +CG ++    VF  +  +D+VSWN++++ Y  HG+G +A+ +F+ MI  GV P
Sbjct: 418 ALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKP 477

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
             I+ V VL ACSH GL + G   F SM K++ I P+ +HYACM+DLLGRA  LEEA  +
Sbjct: 478 DEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNL 537

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
           I ++  EP    WG+LLG+ RIH N+EL E+A++ +F++EP N+G YVLL+++YAA+  W
Sbjct: 538 IRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRW 597

Query: 510 DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569
            +V +++  +   G+QK PG S +EV+ K+++F   D FHP+  +++A L  L  +MK +
Sbjct: 598 VDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHE 657

Query: 570 GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
           GYV  TK+VL+D++ EEK+ ++  HSEKLAVAFG++    G+ IR+ KNLR+CEDCH+  
Sbjct: 658 GYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAI 717

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K ISK   + I+VRD +R+HHF  G+CSC DYW
Sbjct: 718 KHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 162/369 (43%), Gaps = 34/369 (9%)

Query: 48  SSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           +S + N +I    +      A D+    P+    ++ L+L     +  L DA      L 
Sbjct: 63  NSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDA----RMLF 118

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
           D+  ++D      +++ Y     VD+AR VFD+   +    WN L  A   +GR EE   
Sbjct: 119 DSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARR 178

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF---SLLKHGKEIHASVLRHGYNGIVHI 224
           L+          +SD     + L +C     G+   ++L   +++   +        +  
Sbjct: 179 LFES--------KSD-----WELISCNCLMGGYVKRNMLGDARQLFDQIPVRD----LIS 221

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
             T+I  YA+ G +  A  +F +  V++V +W+AM+  Y ++GM  EA  +F EM  +  
Sbjct: 222 WNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQK-- 279

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
                 ++   ++   A    ++ G+ +   +    + S     + +++ Y + G L   
Sbjct: 280 ----REMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSW----NIMISGYCQNGDLAQA 331

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           + +FD M +RD VSW ++I+ Y  +G   +A+ +  EM   G S +  +F   L AC+  
Sbjct: 332 RNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADI 391

Query: 405 GLVEEGKML 413
             +E GK +
Sbjct: 392 AALELGKQV 400



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 139/285 (48%), Gaps = 31/285 (10%)

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           YAR   +  A  +F  M  K+VVSW+AM++ Y R+G   EA ++F  M  +      NS+
Sbjct: 105 YARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK------NSI 158

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           +   +L A      LE+ +     +     D  L   + L+  Y +   L   + +FD +
Sbjct: 159 SWNGLLAAYVRSGRLEEARR----LFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQI 214

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             RD++SWN++IS Y   G   +A ++F+E     V     ++ +++ A    G+++E +
Sbjct: 215 PVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV----FTWTAMVYAYVQDGMLDEAR 270

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV--WGSLL-GS 468
            +F+ M ++  +      Y  M+    +  +++   ++ E++   P P +  W  ++ G 
Sbjct: 271 RVFDEMPQKREMS-----YNVMIAGYAQYKRMDMGRELFEEM---PFPNIGSWNIMISGY 322

Query: 469 CRIHCNVELAERASKRLFELEPT-NAGNYVLLADVYAAADMWDEV 512
           C+   N +LA+  ++ LF++ P  ++ ++  +   YA   +++E 
Sbjct: 323 CQ---NGDLAQ--ARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEA 362



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 122/291 (41%), Gaps = 56/291 (19%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           T  I  + R G    A  VF  M ++N VS++AMI+ Y RN     A +LF         
Sbjct: 37  TKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLF--------- 87

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
                                   KM H  +    L         ++T YAR  +L   +
Sbjct: 88  -----------------------DKMPHKDLFSWNL---------MLTGYARNRRLRDAR 115

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +FD M ++DVVSWN+++S Y   G+  +A  +F  M +     + IS+  +L A   +G
Sbjct: 116 MLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPH----KNSISWNGLLAAYVRSG 171

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
            +EE + LFES     +I  +     C++    + N L +A ++ + + +      W ++
Sbjct: 172 RLEEARRLFESKSDWELISCN-----CLMGGYVKRNMLGDARQLFDQIPVRDLIS-WNTM 225

Query: 466 LGSCRIHCNVELAERASKRLFELEPT-NAGNYVLLADVYAAADMWDEVKRV 515
           +       ++  A    +RLFE  P  +   +  +   Y    M DE +RV
Sbjct: 226 ISGYAQDGDLSQA----RRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRV 272


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/592 (38%), Positives = 360/592 (60%), Gaps = 17/592 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSH------LTDNGFDQDPFLV-TKLINVYSHFDS 130
           P   T   LL     H +LS    VH++      L D+   +D  LV T L+++Y+    
Sbjct: 227 PNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDH---KDGVLVGTALLDMYAKCGH 283

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           +  A  VF+    R    W+AL     L GR  E   L++ M   G    S   +    L
Sbjct: 284 LVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPT-SVASAL 342

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
           +AC       S L  GK++HA + + G +  +    +L+ MYA+ G +  A  +F QM V
Sbjct: 343 RACA----NLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVV 398

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           K+ VS+SA+++ Y +NG A EA  +FR+M  ++ ++ P+  TMVS++ AC+ LAAL+ GK
Sbjct: 399 KDTVSYSALVSGYVQNGKADEAFRVFRKM--QACNVQPDVATMVSLIPACSHLAALQHGK 456

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
             HG ++ RG+ S   + +AL+ MYA+CG+++L + +FD M  RD+VSWN++I+ YG+HG
Sbjct: 457 CGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHG 516

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
            G +A  +F +M +    P  ++F+ ++ ACSH+GLV EGK  F  M  ++ I P +EHY
Sbjct: 517 LGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHY 576

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
             MVDLL R   L+EA + I+ + ++   +VWG+LLG+CR+H N++L ++ S  + +L P
Sbjct: 577 IGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGP 636

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
              GN+VLL+++++AA  +DE   V+ + + +G +K PG S IE+   +++F+  D  H 
Sbjct: 637 EGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHA 696

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           Q  +++  L N+  ++ + GY   T  VL D++ EEKE+ +L HSEKLA+AFG++  S+ 
Sbjct: 697 QSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSED 756

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +TI +TKNLR+C DCH+  K+++    + I+VRD NRFHHF+NG CSCGD+W
Sbjct: 757 KTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/407 (29%), Positives = 203/407 (49%), Gaps = 26/407 (6%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P P  +T+  +L +C+    L  A  VH H    G   D F+ T L++VY+   S   A 
Sbjct: 125 PQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAA 184

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            VF +   R +  WNA+     L G+  + +     M       + D       L A + 
Sbjct: 185 TVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLM-------QDDHAPNASTLVALLP 237

Query: 196 SSCGFSLLKHGKEIHASVLR----HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
                  L  G+ +HA  +R    H +   V + T L+DMYA+ G ++YA  VF  MAV+
Sbjct: 238 LLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVR 297

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV-SVLQACAALAALEQGK 310
           N V+WSA++  +   G   EA  LF++M+ +   LC  S T V S L+ACA L+ L  GK
Sbjct: 298 NEVTWSALVGGFVLCGRMLEAFSLFKDMLAQG--LCFLSPTSVASALRACANLSDLCLGK 355

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +H  + + GL + L   ++L++MYA+ G ++    +FD M  +D VS+++L+S Y  +G
Sbjct: 356 QLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNG 415

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEH 429
              +A ++F++M    V P   + VS++ ACSH   ++ GK    S+    ++R  + E 
Sbjct: 416 KADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSV----IVRGIASET 471

Query: 430 YAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKV--WGSLLGSCRIH 472
             C  ++D+  +  +++ + +I +   + P   +  W +++    IH
Sbjct: 472 SICNALIDMYAKCGRIDLSRQIFD---VMPARDIVSWNTMIAGYGIH 515



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 184/380 (48%), Gaps = 59/380 (15%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           ARH+FD+     I+ +NAL RA +L  RG  +     R        + + +T+ +VLKAC
Sbjct: 82  ARHLFDQIPAPGIHDYNALIRAYSL--RGPALALRLYRSLRRRRLPQPNNYTFPFVLKAC 139

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
            A       L+  + +H    R G +  + + T L+D+YA+     +A  VF +M  ++V
Sbjct: 140 SA----LLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+AM+A YA +G   + +     +++   D  PN+ T+V++L   A   AL QG+ +H
Sbjct: 196 VAWNAMLAGYALHGKYSDTIAC---LLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVH 252

Query: 314 GYILRR-----GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
            Y +R        D +L V +AL+ MYA+CG L     VF+ M  R+ V+W++L+  + +
Sbjct: 253 AYSVRACSLHDHKDGVL-VGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVL 311

Query: 369 HGYGGKAIQIFKEMIYHGVS-PSPISFVSVLGACSH------------------------ 403
            G   +A  +FK+M+  G+   SP S  S L AC++                        
Sbjct: 312 CGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLT 371

Query: 404 -----------AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
                      AGL+++   LF+ M    +++ +V  Y+ +V    +  K +EA ++   
Sbjct: 372 AGNSLLSMYAKAGLIDQATTLFDQM----VVKDTVS-YSALVSGYVQNGKADEAFRVFRK 426

Query: 453 LR---IEPGPKVWGSLLGSC 469
           ++   ++P      SL+ +C
Sbjct: 427 MQACNVQPDVATMVSLIPAC 446


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/619 (38%), Positives = 359/619 (57%), Gaps = 42/619 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P+  T+  LL       SL+    +H+ +  +G  Q+  L+  LI+ Y    ++  AR V
Sbjct: 53  PSHSTFVQLL---KKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIV 109

Query: 138 FDK--TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
           FD+  +   TI +WN + +A +     +E L L+ +M   G    +D++T+T+V  AC  
Sbjct: 110 FDQFPSLPPTI-IWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSR 168

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
                +L  +G+ +H  V++ GY   + +  +L++MY+ F  ++ A  VF +M  ++V++
Sbjct: 169 HP---TLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVIT 225

Query: 256 WSAMIACYARNGMAFEALELFREMI-----------------------------MESHD- 285
           W++++  YA  G    A ELF  M                              M  HD 
Sbjct: 226 WTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDE 285

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + PN   +VS+L ACA L AL+QGK IH YI +  +     + +AL+ MYA+CG+++  +
Sbjct: 286 VKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCAR 345

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VFD + KRD+++W S+IS   +HG G + +  F EM+  G  P  I+ + VL  CSH+G
Sbjct: 346 RVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSG 405

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           LVEEG  +F  M     I P +EHY C++DLLGRA +LE A + I+ + +EP    W +L
Sbjct: 406 LVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRAL 465

Query: 466 LGSCRIHCNVELAERASKRLFELEP-TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           L +CRIH +V+L ER    + EL P ++ G YVLL+++YA+   W+ V +V++ +  RG 
Sbjct: 466 LSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGS 525

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK-EKGYVPQTKVVLYDLD 583
           +  PG S IE+   ++ F++ D+ HP+  +++  L  +   +  E GYVP TK VL+DL+
Sbjct: 526 EGCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLN 585

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            E+KE+ V  HSEKLAVAFGL++T +G TIRITKNLR CEDCHS  K IS   N+EI+VR
Sbjct: 586 EEDKEQAVSWHSEKLAVAFGLLSTQEG-TIRITKNLRTCEDCHSAMKTISLVFNREIVVR 644

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D +RFH FR G CSC DYW
Sbjct: 645 DRSRFHTFRYGNCSCTDYW 663



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 165/354 (46%), Gaps = 39/354 (11%)

Query: 53  NELIQSLCKQGNLRQALDV---LSIEPNPT---QHTYELLLLSCTHHNSLSD-ALNVHSH 105
           N +IQ+  K  + +++L +   +     PT   ++T+  +  +C+ H +L     NVH  
Sbjct: 123 NLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGM 182

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
           +  +G++ D F+   L+N+YS F  + DA+ VFD+  +R +  W ++ +   + G     
Sbjct: 183 VVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRA 242

Query: 166 LELYRRMNGTG--------TGIRSDRFTYTYVLK------------------ACVASSCG 199
            EL+  M G           G    RF Y   L+                    + S+C 
Sbjct: 243 RELFDMMPGRNDVSWAVMVAGYVGHRF-YNEALQCFNDMLCHDEVKPNEAVLVSILSACA 301

Query: 200 -FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
               L  GK IH  + ++      +I T LIDMYA+ G +  A  VF  +  +++++W++
Sbjct: 302 HLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTS 361

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYIL 317
           MI+  + +G+  E L  F EM+ E     P+ +T++ VL  C+    +E+G  + H  I 
Sbjct: 362 MISGLSMHGLGAECLWTFSEMLAEGFK--PDDITLLGVLNGCSHSGLVEEGLSIFHDMIP 419

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
             G+   L     L+ +  R G+LE        M  + DVV+W +L+S+  +HG
Sbjct: 420 LWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHG 473



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 136/346 (39%), Gaps = 48/346 (13%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E  P +     +L +C H  +L     +H ++  N       + T LI++Y+    +D A
Sbjct: 285 EVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCA 344

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R VFD   +R +  W ++   L++ G G E L  +  M     G + D  T   VL  C 
Sbjct: 345 RRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEM--LAEGFKPDDITLLGVLNGCS 402

Query: 195 ASSCGFSLLKHGKEI-HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-N 252
            S     L++ G  I H  +   G    +     LID+  R G +  A      M ++ +
Sbjct: 403 HS----GLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPD 458

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL--------------- 297
           VV+W A+++    +G     ++L   +I    +LCP S     VL               
Sbjct: 459 VVAWRALLSACRIHG----DVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVT 514

Query: 298 -----------QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG-- 344
                      + C   + +E   ++H ++    L   +  ++  +    R   +E G  
Sbjct: 515 KVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYV 574

Query: 345 ----QCVFD--HMDKRDVVSWNS--LISSYGVHGYGGKAIQIFKEM 382
               Q +FD    DK   VSW+S  L  ++G+       I+I K +
Sbjct: 575 PSTKQVLFDLNEEDKEQAVSWHSEKLAVAFGLLSTQEGTIRITKNL 620


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/616 (37%), Positives = 343/616 (55%), Gaps = 40/616 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P+  T   ++ +C     L     V +++ + G   +  +V  L+++Y    ++D A+ +
Sbjct: 230 PSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRL 289

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+   R + ++N +       G   E L +   M     G R DR T    + + +++S
Sbjct: 290 FDECVDRNLVLYNTILSNYARQGLAREALAILDEM--LQQGPRPDRVT----MLSAISAS 343

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L +GK  H  V+R+G  G   I   +IDMY + G    A  VF  M+ K VVSW+
Sbjct: 344 AQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWN 403

Query: 258 AMIACYARNG-------------------------------MAFEALELFREMIMESHDL 286
           ++ A + RNG                               +  +A+ELFREM  +   +
Sbjct: 404 SLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREM--QGEGI 461

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
             + VTM+ +  AC  L A E  K +H YI + G+   + + +ALV M+ARCG  +    
Sbjct: 462 KADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQ 521

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF+ M +RDV +W + I +  + G G  A  +F +M+  GV P  + FV VL ACSH G 
Sbjct: 522 VFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQ 581

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           VE+G  +F S+ ++H I P +EHY CMVDLLGRA  L EA  +I+ + +EP   VWGSLL
Sbjct: 582 VEQGLHIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLL 640

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +CR+H NVE+A  A++R+ EL P  AG +VLL+++YA+A  W +V RV+  L  +G++K
Sbjct: 641 AACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRK 700

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
           VPG S ++V   ++ F S DE HP+   +  +L  ++    + G++P    VL D+D +E
Sbjct: 701 VPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQE 760

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE ++  HSEKLA+AFGLI T +   IR+ KNLR+C DCHSF K  S   N+EI+VRD N
Sbjct: 761 KEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNN 820

Query: 647 RFHHFRNGVCSCGDYW 662
           RFH FR G+CSC DYW
Sbjct: 821 RFHFFRQGLCSCCDYW 836



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/398 (31%), Positives = 203/398 (51%), Gaps = 30/398 (7%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF---DSVDDARHVF-----DKTRRRTI 146
           +L+    +H  +T NG DQ P  +TKL+N  +     +S+D AR  F     D      +
Sbjct: 37  TLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDAL 96

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC--VASSCGFSLLK 204
           ++ N+L R  + AG G E + LY RM     G+  + +T+ +VL  C  +A+ C      
Sbjct: 97  FMLNSLIRGYSSAGLGREAILLYVRM--LVLGVTPNHYTFPFVLSGCTKIAAFC------ 148

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
            G ++H SV++ G    V I   LI  YA  G + +   VF  M+ +NVVSW+++I  YA
Sbjct: 149 EGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYA 208

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           R     EA+ LF EM+     + P+SVTMV V+ ACA L  L+ G+ +  YI   GL   
Sbjct: 209 RGDRPKEAVSLFFEMV--EAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLN 266

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
             +V+ALV MY +CG ++  + +FD    R++V +N+++S+Y   G   +A+ I  EM+ 
Sbjct: 267 KVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQ 326

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY----ACMVDLLGRA 440
            G  P  ++ +S + A   A LV+   + +  +   ++IR  +E +      ++D+  + 
Sbjct: 327 QGPRPDRVTMLSAISA--SAQLVD---LFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKC 381

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
            K E A ++  DL        W SL      + +VE A
Sbjct: 382 GKPEMACRVF-DLMSNKTVVSWNSLTAGFIRNGDVESA 418


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/579 (37%), Positives = 338/579 (58%), Gaps = 39/579 (6%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           T +I  Y   D +  AR + D         WNA+       G  EE  + +RRM+  G  
Sbjct: 221 TTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMG-- 278

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH----GYNGIVHIMTTLIDMYAR 234
           I+ D +TYT ++ AC + +    +   G+++H  +LR      ++ ++ +   LI  Y +
Sbjct: 279 IQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTK 338

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACY------------------------------- 263
           +  ++ A  VF +M V++++SW+A+++ Y                               
Sbjct: 339 YDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGL 398

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           A+NG   E L+LF +M  +S  L P        + AC+ L +L+ G+ IH  ++R G DS
Sbjct: 399 AQNGFGEEGLKLFNQM--KSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDS 456

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            L   +AL+TMY+RCG +E  + VF  M   D VSWN++I++   HG+G KAI++F++M+
Sbjct: 457 GLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMM 516

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
              + P  I+F+++L AC+HAGL++EG+  F++M   + I P  +HYA ++DLL RA   
Sbjct: 517 KEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMF 576

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
            +A  +I+ +  E G  +W +LL  CRIH N+EL  +A+ RL EL P   G Y++L+++Y
Sbjct: 577 LKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMY 636

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           AA   WDEV RV+ L+  RG++K PG S +EV+  ++ F+  D  HP+ + ++  L  L 
Sbjct: 637 AALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLV 696

Query: 564 AEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCE 623
            EMK+ GYVP TK VL+D+++E KE  +  HSEKLAV +G++    G TIR+ KNLR+C 
Sbjct: 697 NEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICG 756

Query: 624 DCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           DCH+  K+ISK   +EI+VRD  RFHHF+NG CSCG+YW
Sbjct: 757 DCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 169/409 (41%), Gaps = 102/409 (24%)

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR--------------- 143
           A  VH+H+  +GF  + F++ +LIN+Y    ++  AR +FDK  +               
Sbjct: 24  ARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSS 83

Query: 144 ------------------RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
                             R    +NA+  A +    G   L L+ +M   G     D FT
Sbjct: 84  SGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYG--FLPDPFT 141

Query: 186 YTYVLKACVASSCGFSLL----KHGKEIHASVLRHGYNGIVHIMTTLI------------ 229
           ++ VL A        SL+    +H + +H  V++ G   I  +   L+            
Sbjct: 142 FSSVLSA-------LSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLV 194

Query: 230 -------------------DMYARFGCVMYAGFVFSQ--MAVKNV---------VSWSAM 259
                               +Y      M AG+V +   +A + +         V+W+AM
Sbjct: 195 KSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAM 254

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA----LAALEQGKMIHGY 315
           I+ Y R G+  EA + FR M   S  +  +  T  S++ AC +    +     G+ +HGY
Sbjct: 255 ISGYVRRGLYEEAFDTFRRM--HSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGY 312

Query: 316 ILRRGLDS----ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           ILR  ++     +L V +AL+T Y +  ++   + VFD M  RD++SWN+++S Y     
Sbjct: 313 ILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQR 372

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
             +A  IF EM    V    +++  ++   +  G  EEG  LF  M+ E
Sbjct: 373 IEEANSIFSEMPERNV----LTWTVMISGLAQNGFGEEGLKLFNQMKSE 417



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 8/186 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  + +   + +C+   SL +   +HS +   G D        LI +YS    V+ A  V
Sbjct: 421 PCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESV 480

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F          WNA+  AL   G G + +EL+ +M      I  DR T+  +L AC  + 
Sbjct: 481 FLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQM--MKEDILPDRITFLTILTACNHA- 537

Query: 198 CGFSLLKHGKEIHASV-LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVS 255
               L+K G+    ++  R+G          LID+  R G  + A  V   M  +     
Sbjct: 538 ---GLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPI 594

Query: 256 WSAMIA 261
           W A++A
Sbjct: 595 WEALLA 600


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/616 (37%), Positives = 362/616 (58%), Gaps = 15/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+    K+G    A+++      +   P++ T+  +L +    + +     VHS +  
Sbjct: 209 NALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVK 268

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
             F  + F+   L++ YS  D + +AR +F +        +N L       GR EE LEL
Sbjct: 269 CNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLEL 328

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL-LKHGKEIHASVLRHGYNGIVHIMTT 227
           +R +  T    R DR  + +     +A++   SL L+ G++IH+  +       V +  +
Sbjct: 329 FRELQFT----RFDRRQFPFATLLSIAAN---SLNLEMGRQIHSQAIVTDAISEVLVGNS 381

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+DMYA+      A  +F+ +A ++ V W+A+I+ Y + G+  + L+LF EM      + 
Sbjct: 382 LVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEM--HRAKIG 439

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
            +S T  S+L+ACA LA+L  GK +H  I+R G  S +   SALV MYA+CG ++    +
Sbjct: 440 ADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQM 499

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F  M  R+ VSWN+LIS+Y  +G GG A++ F++MI+ G+ P+ +SF+S+L ACSH GLV
Sbjct: 500 FQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLV 559

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           EEG   F SM + + + P  EHYA MVD+L R+ + +EA K++  +  EP   +W S+L 
Sbjct: 560 EEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILN 619

Query: 468 SCRIHCNVELAERASKRLFELEP-TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           SCRIH N ELA +A+ +LF ++   +A  YV ++++YAAA  WD V +VK+ L  RG++K
Sbjct: 620 SCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRK 679

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
           VP  S +E+K+K + F + D  HPQ +++   L  L  +M+E+GY P +   L+++D E 
Sbjct: 680 VPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEV 739

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           K   +  HSE++A+AF LI+T KG  I + KNLR C DCH+  K ISK  N+EI VRD +
Sbjct: 740 KVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSS 799

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF +G CSC DYW
Sbjct: 800 RFHHFTDGSCSCKDYW 815



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/451 (22%), Positives = 190/451 (42%), Gaps = 45/451 (9%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALN----------- 101
           N +I    K GNL  A  +       +  T+ +L+     HN   +A N           
Sbjct: 77  NTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMV 136

Query: 102 ------------------------VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
                                   VH H+   G+D    +   L++ Y    S+  A H+
Sbjct: 137 PDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHL 196

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F     +    +NAL    +  G   + + L+ +M     G R   FT+  VL A +   
Sbjct: 197 FKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQ--DLGFRPSEFTFAAVLTAGIQ-- 252

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                ++ G+++H+ V++  +   V +   L+D Y++   ++ A  +F +M   + +S++
Sbjct: 253 --MDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYN 310

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            +I C A NG   E+LELFRE+     D         ++L   A    LE G+ IH   +
Sbjct: 311 VLITCCAWNGRVEESLELFRELQFTRFD--RRQFPFATLLSIAANSLNLEMGRQIHSQAI 368

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
                S + V ++LV MYA+C K      +F  +  +  V W +LIS Y   G     ++
Sbjct: 369 VTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLK 428

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F EM    +     ++ S+L AC++   +  GK L   + +   +  +V   + +VD+ 
Sbjct: 429 LFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCL-SNVFSGSALVDMY 487

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            +   ++EA ++ +++ +      W +L+ +
Sbjct: 488 AKCGSIKEALQMFQEMPVRNSVS-WNALISA 517



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 183/410 (44%), Gaps = 21/410 (5%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT--DNG-- 110
           LI+S  ++ +L   L  L+      QH    ++ +    N+      V +HL   D G  
Sbjct: 3   LIKSCTRKTHLHN-LGTLTSPKRHFQHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAA 61

Query: 111 ---FDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE 163
              FD+ P         +I  Y    ++  AR +FD   +R++  W  L        R  
Sbjct: 62  RKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFL 121

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           E   L+  M     G+  D  T   +L         F  +    ++H  V++ GY+  + 
Sbjct: 122 EAFNLFADM--CRHGMVPDHITLATLLSGFTE----FESVNEVAQVHGHVVKVGYDSTLM 175

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           +  +L+D Y +   +  A  +F  MA K+ V+++A++  Y++ G   +A+ LF +  M+ 
Sbjct: 176 VCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFK--MQD 233

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
               P+  T  +VL A   +  +E G+ +H ++++      + V +AL+  Y++  ++  
Sbjct: 234 LGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVE 293

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
            + +F  M + D +S+N LI+    +G   +++++F+E+ +         F ++L   ++
Sbjct: 294 ARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAAN 353

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           +  +E G+ +         I   +   + +VD+  + +K  EA +I  DL
Sbjct: 354 SLNLEMGRQIHSQAIVTDAISEVLVGNS-LVDMYAKCDKFGEANRIFADL 402


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/579 (39%), Positives = 339/579 (58%), Gaps = 43/579 (7%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           T +I  Y   D +  AR + +         WNA+       G  EE  +L RRM+  G  
Sbjct: 212 TTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLG-- 269

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH----GYNGIVHIMTTLIDMYAR 234
           I+ D +TYT V+ A  AS+ G  L   G+++HA VLR       + ++ +   LI +Y R
Sbjct: 270 IQLDEYTYTSVISA--ASNAG--LFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTR 325

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSA-------------------------------MIACY 263
            G ++ A  VF +M VK++VSW+A                               MI+  
Sbjct: 326 CGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGL 385

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           A+NG   E L+LF +M +E   L P        + +C+ L +L+ G+ +H  I++ G DS
Sbjct: 386 AQNGFGEEGLKLFNQMKLEG--LEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDS 443

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            L V +AL+TMY+RCG +E    VF  M   D VSWN++I++   HG+G +AIQ++++M+
Sbjct: 444 SLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKML 503

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
              + P  I+F+++L ACSHAGLV+EG+  F++MR  + I P  +HY+ ++DLL RA   
Sbjct: 504 KEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMF 563

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
            EA  + E +  EPG  +W +LL  C IH N+EL  +A+ RL EL P   G Y+ L+++Y
Sbjct: 564 SEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMY 623

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           AA   WDEV RV++L+  RG++K PG S IEV+  ++ F+  D  HP+   ++  L  L 
Sbjct: 624 AALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLV 683

Query: 564 AEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCE 623
            EM++ GYVP TK VL+D+++E+KE  +  HSEKLAV +G++    G TIR+ KNLR+C 
Sbjct: 684 HEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICG 743

Query: 624 DCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           DCH+  K+ISK  ++EI+VRD  RFHHFRNG CSC +YW
Sbjct: 744 DCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 170/435 (39%), Gaps = 127/435 (29%)

Query: 93  HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR--------- 143
           H S + A  VH+H+  +GF   P ++ +LI+ Y    ++  AR++FDK  +         
Sbjct: 11  HTSFARA--VHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTM 68

Query: 144 ------------------------RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
                                   R    +NA+  A + +  G   L+L+ +M     G 
Sbjct: 69  LSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMK--RLGF 126

Query: 180 RSDRFTYTYVLKACVASSCGFSLL----KHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
             D FT++ VL A        SL+     H +++H  V + G   +  ++  L+  Y   
Sbjct: 127 VPDPFTFSSVLGA-------LSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSC 179

Query: 236 G-------CVMY------------------------AGFV-----------FSQMAVKNV 253
                   CV+                         AG+V              M     
Sbjct: 180 ASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIA 239

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+AMI+ Y   G   EA +L R   M S  +  +  T  SV+ A +       G+ +H
Sbjct: 240 VAWNAMISGYVHRGFYEEAFDLLRR--MHSLGIQLDEYTYTSVISAASNAGLFNIGRQVH 297

Query: 314 GYILRRGLDS----ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS-------- 361
            Y+LR  +      +L V +AL+T+Y RCGKL   + VFD M  +D+VSWN+        
Sbjct: 298 AYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNA 357

Query: 362 -----------------------LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
                                  +IS    +G+G + +++F +M   G+ P   ++   +
Sbjct: 358 RRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAI 417

Query: 399 GACSHAGLVEEGKML 413
            +CS  G ++ G+ L
Sbjct: 418 ASCSVLGSLDNGQQL 432



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 141/345 (40%), Gaps = 86/345 (24%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ------------------ 247
            + +HA +L  G+     I+  LID Y +   + YA ++F +                  
Sbjct: 15  ARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSA 74

Query: 248 ---------------MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
                          M++++ VS++AMI  ++ +     AL+LF +M  +     P+  T
Sbjct: 75  AGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQM--KRLGFVPDPFT 132

Query: 293 MVSVLQACAALAALE-QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL-GQCV--- 347
             SVL A + +A  E   + +H  + + G  S+  V++AL++ Y  C    L   CV   
Sbjct: 133 FSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMA 192

Query: 348 -----FDHM--DKRD-------------------------------VVSWNSLISSYGVH 369
                FD     +RD                                V+WN++IS Y   
Sbjct: 193 AARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHR 252

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G+  +A  + + M   G+     ++ SV+ A S+AGL   G+ +   + +  +++PS  H
Sbjct: 253 GFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRT-VVQPS-GH 310

Query: 430 YA-----CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           +       ++ L  R  KL EA ++ + + ++     W ++L  C
Sbjct: 311 FVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVS-WNAILSGC 354



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 103/249 (41%), Gaps = 17/249 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  + Y   + SC+   SL +   +HS +   G D    +   LI +YS    V+ A  V
Sbjct: 408 PCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTV 467

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F          WNA+  AL   G G + ++LY +M      I  DR T+  +L AC  S 
Sbjct: 468 FLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKM--LKEDILPDRITFLTILSAC--SH 523

Query: 198 CGFSLLKHGKEIHASV-LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVS 255
            G  L+K G+    ++ + +G        + LID+  R G    A  V   M  +     
Sbjct: 524 AG--LVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPI 581

Query: 256 WSAMIA-CYARNGM--AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           W A++A C+    M    +A +   E++ +         T +S+    AAL   ++   +
Sbjct: 582 WEALLAGCWIHGNMELGIQAADRLLELMPQQDG------TYISLSNMYAALGQWDEVARV 635

Query: 313 HGYILRRGL 321
              +  RG+
Sbjct: 636 RKLMRERGV 644



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 33/135 (24%)

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK------- 353
           A L+     + +H +IL  G      +++ L+  Y +   +   + +FD + K       
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 354 --------------------------RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
                                     RD VS+N++I+++     G  A+Q+F +M   G 
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126

Query: 388 SPSPISFVSVLGACS 402
            P P +F SVLGA S
Sbjct: 127 VPDPFTFSSVLGALS 141


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/646 (36%), Positives = 369/646 (57%), Gaps = 36/646 (5%)

Query: 26  PPK------PSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPT 79
           PP+      P++V   + +++++   SL     N+ I S  +  +L  A +V       T
Sbjct: 49  PPRRIHLVSPNNVTPNLHVDTASDVVSL-----NKTIASFVRACDLESARNVFEKMSVRT 103

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
             T+  +L   + +  ++  +     L D   + D      ++  Y     V+ A   F+
Sbjct: 104 TVTWNTML---SGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFN 160

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRM---NGTGTGIRSDRFTYTYVLKACVAS 196
           K   + I  WN L       G+ ++  +L+  M   NG                 A ++ 
Sbjct: 161 KMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVS-------------WSAMISG 207

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+  +E++ +V   G   +V + T ++  Y +FG V  A  +F +MAVKN+V+W
Sbjct: 208 YVEHGDLEAAEELYKNV---GMKSVV-VETAMLTGYMKFGKVELAERIFQRMAVKNLVTW 263

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           ++MIA Y  N  A + L++F+ MI ES  + PN +++ SVL  C+ L+AL  G+ +H  +
Sbjct: 264 NSMIAGYVENCRAEDGLKVFKTMI-ESR-VRPNPLSLSSVLLGCSNLSALPLGRQMHQLV 321

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            +  L       ++L++MY +CG L+    +F  M ++DV+SWN++IS Y  HG G KA+
Sbjct: 322 SKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKAL 381

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F +M    + P  I+FV+V+ AC+HAG V+ G   F+SM+KE  I     HY C++DL
Sbjct: 382 HLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDL 441

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA +L+EA  +I+++  +P   ++G+LLG+CRIH N++LAE A++ L  L+PT+A  Y
Sbjct: 442 LGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGY 501

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           V LA++YAA + WD+V +V+++++   + K+PG S IE+K   + F S D  HP+   +H
Sbjct: 502 VQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIH 561

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  L  +MK  GYVP  +  L+D++ E KE+++L HSEKLA+AFGL+ T+ G  IR+ 
Sbjct: 562 KKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVF 621

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH   KFIS    +EI+VRD  RFHHFRNG CSCGDYW
Sbjct: 622 KNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/531 (39%), Positives = 337/531 (63%), Gaps = 9/531 (1%)

Query: 134 ARHVFDKTRRR-TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           A  VF K  +   +++WN L R     G     + LYR M  +G  +  D  TY ++LKA
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGF-VEPDTHTYPFLLKA 130

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
                   + ++ G+ IH+ V+R G+  ++++  +L+ +YA  G V  A  VF +M  K+
Sbjct: 131 V----GKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD 186

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           +V+W+++I  +A NG   EAL L+ EM ++   + P+  T+VS+L ACA + AL  GK  
Sbjct: 187 LVAWNSVINGFAENGKPEEALALYTEMDLKG--IKPDGFTIVSLLSACAKIGALTLGKRF 244

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           H Y+++ GL   L   + L+ +YARCG++E  + +FD M  ++ VSW SLI    V+G G
Sbjct: 245 HVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLG 304

Query: 373 GKAIQIFKEM-IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
            +AI++FK M    G+ P  I+FV +L ACSH G+V+EG   F  M +E+ I P +EH+ 
Sbjct: 305 KEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFG 364

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           CMVDLL RA ++++A + I  + ++P   +W +LLG+C +H + +LAE A  ++ +LEP 
Sbjct: 365 CMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPN 424

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
           ++G+YVLL+++YA+   W +V+++++ +   G++KVPG S +EV  +++ F+  D+ HPQ
Sbjct: 425 HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQ 484

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
            + ++A L  ++  ++ +GYVPQ   V  D++ EEKE  ++ HSEK+A+AF LI+T +  
Sbjct: 485 NDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERW 544

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            IR+ KNL++C DCH   K +SK  N+EI+VRD +RFHHF+NG CSC DYW
Sbjct: 545 PIRVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 159/332 (47%), Gaps = 28/332 (8%)

Query: 53  NELIQSLCKQGNLRQALDVLS-------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSH 105
           N LI+   + GN   A+ +         +EP+   HTY  LL +      +     +HS 
Sbjct: 89  NTLIRGYAEIGNSVSAVSLYREMRASGFVEPD--THTYPFLLKAVGKMADVRLGETIHSV 146

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
           +  +GF    ++   L+++Y++   V  A  VFDK   + +  WN++       G+ EE 
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L LY  M+    GI+ D FT   +L AC         L  GK  H  +++ G    +H  
Sbjct: 207 LALYTEMD--LKGIKPDGFTIVSLLSACAK----IGALTLGKRFHVYMIKVGLTRNLHSS 260

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
             L+D+YAR G V  A  +F +M  KN VSW+++I   A NG+  EA+ELF+   MES +
Sbjct: 261 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKN--MESKE 318

Query: 286 -LCPNSVTMVSVLQACAALAALEQG-----KMIHGYILRRGLDSILPVVSALVTMYARCG 339
            L P  +T V +L AC+    +++G     +M   Y +   ++        +V + AR G
Sbjct: 319 GLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHF----GCMVDLLARAG 374

Query: 340 KLELG-QCVFDHMDKRDVVSWNSLISSYGVHG 370
           +++   + +     + +VV W +L+ +  VHG
Sbjct: 375 QVKKAYEYILKMPMQPNVVIWRTLLGACTVHG 406


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/596 (37%), Positives = 365/596 (61%), Gaps = 12/596 (2%)

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP---FLVTKLINVYS 126
           D   + PN +     L LL+   H +L    +VH++      DQ+     + T L+++Y+
Sbjct: 193 DRGGLRPNASTLVSLLPLLA--QHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYA 250

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
               +  A  VF     R    W+AL     L  R  E   L++ M   G    S   + 
Sbjct: 251 KCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSAT-SV 309

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
              L+ C +     + L+ G ++HA + + G +  +    +L+ MYA+ G +  A  +F 
Sbjct: 310 ASALRVCAS----LADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFD 365

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
           ++A+K+ +S+ A+++ Y +NG A EA  +F++M  ++ ++ P+  TMVS++ AC+ LAAL
Sbjct: 366 EIAIKDTISYGALLSGYVQNGKAEEAFLVFKKM--QACNVQPDIATMVSLIPACSHLAAL 423

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
           + G+  HG ++ RGL     + ++L+ MYA+CG+++L + VFD M  RD+VSWN++I+ Y
Sbjct: 424 QHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGY 483

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
           G+HG G +A  +F  M   G  P  ++F+ ++ ACSH+GLV EGK  F++M  ++ I P 
Sbjct: 484 GIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPR 543

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF 486
           +EHY CMVDLL R   L+EA + I+ + ++   +VWG+LLG+CRIH N++L ++ S+ + 
Sbjct: 544 MEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQ 603

Query: 487 ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD 546
           +L P   GN+VLL+++++AA  +DE   V+ + + +G +K PG S IE+   +++FV  D
Sbjct: 604 KLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGD 663

Query: 547 EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLIN 606
           + HP    ++  L N+  ++K+ GY   T  VL DL+ EEKE+ +L HSEKLA+AFG+++
Sbjct: 664 QSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLS 723

Query: 607 TSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            ++ +TI +TKNLR+C DCH+  K+++   N+ I+VRD NRFHHF+NG CSCGD+W
Sbjct: 724 LNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 209/437 (47%), Gaps = 27/437 (6%)

Query: 49  SRNKNELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHS 104
           +R  N LI++   +G    A+D+    L     P ++T+  +L +C+    L     +H+
Sbjct: 64  ARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHA 123

Query: 105 HLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
           H    G   D F+ T LI++Y        A +VF K   R +  WNA+       G    
Sbjct: 124 HAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHH 183

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG---I 221
            +     M   G G+R +  T   +L         F     G  +HA  LR   +     
Sbjct: 184 AIAHLLDMQDRG-GLRPNASTLVSLLPLLAQHGALF----QGTSVHAYCLRAYLDQNEEQ 238

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V I T L+DMYA+   ++YA  VF  M V+N V+WSA+I  +       EA  LF++M++
Sbjct: 239 VLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLV 298

Query: 282 ESHDLCPNSVTMV-SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           E   +C  S T V S L+ CA+LA L  G  +H  + + G+ + L   ++L++MYA+ G 
Sbjct: 299 EG--MCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGL 356

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +     +FD +  +D +S+ +L+S Y  +G   +A  +FK+M    V P   + VS++ A
Sbjct: 357 INEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPA 416

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRP-SVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEP 457
           CSH   ++ G+    S+    +IR  ++E   C  ++D+  +  +++ + ++ + +   P
Sbjct: 417 CSHLAALQHGRCSHGSV----IIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKM---P 469

Query: 458 GPKV--WGSLLGSCRIH 472
              +  W +++    IH
Sbjct: 470 ARDIVSWNTMIAGYGIH 486



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 164/327 (50%), Gaps = 12/327 (3%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR VFD+        +NAL RA +  G     ++LYR M      +  +++T+ +VLKAC
Sbjct: 52  ARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSM--LYFRVPPNKYTFPFVLKAC 109

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
            A     + L  G+ IHA     G +  + + T LID+Y R      A  VF++M +++V
Sbjct: 110 SA----LADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDV 165

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+AM+A YA +GM   A+    +M  +   L PN+ T+VS+L   A   AL QG  +H
Sbjct: 166 VAWNAMLAGYANHGMYHHAIAHLLDM-QDRGGLRPNASTLVSLLPLLAQHGALFQGTSVH 224

Query: 314 GYILRRGLDS---ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            Y LR  LD     + + +AL+ MYA+C  L     VF  M  R+ V+W++LI  + +  
Sbjct: 225 AYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCD 284

Query: 371 YGGKAIQIFKEMIYHGVS-PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
              +A  +FK+M+  G+   S  S  S L  C+    +  G  L   + K   I   +  
Sbjct: 285 RMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSG-IHADLTA 343

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIE 456
              ++ +  +A  + EA  + +++ I+
Sbjct: 344 GNSLLSMYAKAGLINEATMLFDEIAIK 370



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 6/228 (2%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF ++   +  +++A+I  Y+  G    A++L+R M+     + PN  T   VL+AC+AL
Sbjct: 55  VFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLY--FRVPPNKYTFPFVLKACSAL 112

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
           A L  G+ IH +    GL + L V +AL+ +Y RC +      VF  M  RDVV+WN+++
Sbjct: 113 ADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAML 172

Query: 364 SSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           + Y  HG    AI    +M    G+ P+  + VS+L   +  G + +G  +     + ++
Sbjct: 173 AGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYL 232

Query: 423 IR--PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            +    V     ++D+  +   L  A ++   + +      W +L+G 
Sbjct: 233 DQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVR-NEVTWSALIGG 279


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/607 (35%), Positives = 348/607 (57%), Gaps = 10/607 (1%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           I  L K   +   +    I PN  + TY  +L +CT    +     +HS    NGF+ D 
Sbjct: 324 ISDLAKSFEIFGQMQATGIHPN--KFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDM 381

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           ++   LI++YS +  +D AR + +   +R +  W ++          EE L  ++ M   
Sbjct: 382 YVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDC 441

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
           G  +  D         AC     G   ++ G +IHA V   GY   + I  TL+++YAR 
Sbjct: 442 G--VWPDNIGLASAASACA----GIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARC 495

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G    A  +F ++  K+ ++W+ +I+ + ++ +  +AL +F  M M       N  T +S
Sbjct: 496 GRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVF--MKMSQAGAKYNVFTFIS 553

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
            + A A LA ++QGK +HG  ++ G  S   V +AL+++Y +CG +E  + +F  M  R+
Sbjct: 554 AISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRN 613

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
            VSWN++I+S   HG G +A+ +F +M   G+ P+ ++F+ VL ACSH GLVEEG   F+
Sbjct: 614 EVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFK 673

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
           SM   + + P  +HYAC+VD+LGRA +L+ A + ++++ I     +W +LL +C++H N+
Sbjct: 674 SMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNI 733

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           E+ E A+K L ELEP ++ +YVLL++ YA    W    +V+++++ RG++K PGRS IEV
Sbjct: 734 EIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEV 793

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
           K  +++F   D  HP  +Q++  L  L+  + + GY  +   + ++ + E+K+     HS
Sbjct: 794 KNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHS 853

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EKLAVAFGL+       +R+ KNLR+C+DCHS+ KF S+   +EI++RDV RFHHF +G 
Sbjct: 854 EKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGS 913

Query: 656 CSCGDYW 662
           CSCGDYW
Sbjct: 914 CSCGDYW 920



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 200/442 (45%), Gaps = 31/442 (7%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDA-------------------LNVHSHLTDNGFDQD 114
           I P+  +    L+    +HH +L  A                   L +H+     G   D
Sbjct: 18  IVPDNPEKILSLVAAKASHHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGAD 77

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             +   LI++Y+    V  AR VF +   R    W A+       G G+E   LY +M+ 
Sbjct: 78  RLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHW 137

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
           T            YVL + +++     L   G+ IHA V +  +     +   LI +Y  
Sbjct: 138 TAV------IPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLG 191

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
           FG    A  VF  M   + V+++ +I+ +A+ G    AL++F EM +    L P+ VT+ 
Sbjct: 192 FGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSG--LRPDCVTVA 249

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           S+L ACA++  L++GK +H Y+L+ G+        +L+ +Y +CG +E    +F+  D+ 
Sbjct: 250 SLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRT 309

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           +VV WN ++ +YG      K+ +IF +M   G+ P+  ++  +L  C+  G +E G+ + 
Sbjct: 310 NVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQI- 368

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH-- 472
            S+  ++     +     ++D+  +   L++A KI+E L  +     W S++     H  
Sbjct: 369 HSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLE-KRDVVSWTSMIAGYVQHDF 427

Query: 473 CNVELAERASKRLFELEPTNAG 494
           C   LA     +   + P N G
Sbjct: 428 CEEALATFKEMQDCGVWPDNIG 449


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/591 (36%), Positives = 350/591 (59%), Gaps = 22/591 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P   ++  +L SC   +       +H H+T  G + +PF++T LI++Y     V DAR 
Sbjct: 50  SPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARK 109

Query: 137 VFDKTRRRT--IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           VF++  + +     +NAL    T   +  +   ++RRM  TG  +  D  T   ++  C 
Sbjct: 110 VFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSV--DSVTMLGLVPLCT 167

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
                   L  G+ +H   ++ G +  V ++ + I MY + G V     +F +M VK ++
Sbjct: 168 VPE----YLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLI 223

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           +W+A+I+ Y++NG+A++ LEL+ +M  +S  +CP+  T+VSVL +CA L A + G  +  
Sbjct: 224 TWNAVISGYSQNGLAYDVLELYEQM--KSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGK 281

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            +   G    + V +A ++MYARCG L   + VFD M  + +VSW ++I  YG+HG G  
Sbjct: 282 LVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEI 341

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
            + +F +MI  G+ P    FV VL ACSH+GL ++G  LF +M++E+ + P  EHY+C+V
Sbjct: 342 GLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLV 401

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           DLLGRA +L+EA + IE + +EP   VWG+LLG+C+IH NV++AE A  ++ E EP N G
Sbjct: 402 DLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIG 461

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
            YVL++++Y+ +   + + R++ ++  R  +K PG S +E K +++ F++ D  H Q E+
Sbjct: 462 YYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEE 521

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI---VLGHSEKLAVAFGLINTSKGE 611
           +H +L  L   + E         +  ++D +  E +      HSE+LA+AFG++N+  G 
Sbjct: 522 VHRMLDELETSVME---------LAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGT 572

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            I + KNLR+CEDCH F K +SK  +++ +VRD +RFH+F++GVCSC DYW
Sbjct: 573 EILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/616 (36%), Positives = 350/616 (56%), Gaps = 39/616 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PT+ T   +++  +  +  +   +VH  +   GF    F+ + L+++Y+    + DAR V
Sbjct: 144 PTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRV 203

Query: 138 FDKTRRRTIYV-------------------------------WNALFRALTLAGRGEEVL 166
           F +   +T+ +                               W  +   LT  G   E L
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +++RRM   G GI  D++T+  +L AC A     + L+ GK+IHA + R  Y   V + +
Sbjct: 264 DVFRRMRAEGVGI--DQYTFGSILTACGA----LAALEEGKQIHAYITRTWYEDNVFVGS 317

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+DMY++   +  A  VF +M  +N++SW+AMI  Y +N  + EA+  F EM M+   +
Sbjct: 318 ALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDG--I 375

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+  T+ SV+ +CA LA+LE+G   H   L  GL   + V +ALVT+Y +CG +E    
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +FD M   D VSW +L++ Y   G   + I +F++M+ +G+ P  ++F+ VL ACS AGL
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGL 495

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           VE+G   F+SM+K+H I P  +HY CM+DL  R+ + +EA + I+ +   P    W +LL
Sbjct: 496 VEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLL 555

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            SCR+  N+E+ + A++ L E +P N  +YVLL  ++AA   W EV  ++R +  R ++K
Sbjct: 556 SSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKK 615

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S I+ K K++ F + D+ HP   +++  L  L+++M E+GY P    VL+D+   +
Sbjct: 616 EPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADAD 675

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           K  ++  HSEKLA+AFGLI   +   IRI KNLR+C DCH+ TKFISK   ++ILVRD  
Sbjct: 676 KVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAV 735

Query: 647 RFHHFRNGVCSCGDYW 662
           RFH F +G CSCGD+W
Sbjct: 736 RFHKFSDGTCSCGDFW 751



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 177/378 (46%), Gaps = 43/378 (11%)

Query: 111 FDQ--DPFLVTK--LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FD+  DP L T+  L++  +H   V D   +F     R    +NAL    +  G     +
Sbjct: 71  FDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSV 130

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +LYR +    + +R  R T    L A +  +   S    G  +H  VLR G+     + +
Sbjct: 131 QLYRALLREES-VRPTRIT----LSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGS 185

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVV-------------------------------S 255
            L+DMYA+ G +  A  VF +M  K VV                               +
Sbjct: 186 PLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSIT 245

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+ M+    +NG+  EAL++FR M  E   +  +  T  S+L AC ALAALE+GK IH Y
Sbjct: 246 WTTMVTGLTQNGLQLEALDVFRRMRAEGVGI--DQYTFGSILTACGALAALEEGKQIHAY 303

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           I R   +  + V SALV MY++C  + L + VF  M  R+++SW ++I  YG +    +A
Sbjct: 304 ITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEA 363

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           ++ F EM   G+ P   +  SV+ +C++   +EEG   F  +     +   +     +V 
Sbjct: 364 VRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVT 422

Query: 436 LLGRANKLEEAAKIIEDL 453
           L G+   +E+A ++ +++
Sbjct: 423 LYGKCGSIEDAHRLFDEM 440



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 151/322 (46%), Gaps = 14/322 (4%)

Query: 55  LIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           ++  L + G   +ALDV     +      Q+T+  +L +C    +L +   +H+++T   
Sbjct: 249 MVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTW 308

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           ++ + F+ + L+++YS   S+  A  VF +   R I  W A+          EE +  + 
Sbjct: 309 YEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFS 368

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M     GI+ D FT   V+ +C       + L+ G + H   L  G    + +   L+ 
Sbjct: 369 EMQ--MDGIKPDDFTLGSVISSCA----NLASLEEGAQFHCLALVSGLMRYITVSNALVT 422

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           +Y + G +  A  +F +M+  + VSW+A++  YA+ G A E ++LF +M+  ++ L P+ 
Sbjct: 423 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKML--ANGLKPDG 480

Query: 291 VTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
           VT + VL AC+    +E+G           G+  I    + ++ +Y+R G+ +  +    
Sbjct: 481 VTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIK 540

Query: 350 HMDKR-DVVSWNSLISSYGVHG 370
            M    D   W +L+SS  + G
Sbjct: 541 QMPHSPDAFGWATLLSSCRLRG 562



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 114/268 (42%), Gaps = 18/268 (6%)

Query: 57  QSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPF 116
           Q+ C +  +R   ++      P   T   ++ SC +  SL +    H     +G  +   
Sbjct: 356 QNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYIT 415

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           +   L+ +Y    S++DA  +FD+        W AL       G+ +E ++L+ +M    
Sbjct: 416 VSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKM--LA 473

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARF 235
            G++ D  T+  VL AC  S  G  L++ G +   S+ + HG   I    T +ID+Y+R 
Sbjct: 474 NGLKPDGVTFIGVLSAC--SRAG--LVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRS 529

Query: 236 GCVMYAGFVFSQMA-VKNVVSWSAMI-ACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           G    A     QM    +   W+ ++ +C  R  M  E  +   E ++E+    P S  +
Sbjct: 530 GRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNM--EIGKWAAENLLETDPQNPASYVL 587

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGL 321
           +  + A        +G+      LRRG+
Sbjct: 588 LCSMHAA-------KGQWTEVAHLRRGM 608


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/590 (39%), Positives = 344/590 (58%), Gaps = 8/590 (1%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
           S+ P  T  +  +L L  +H  +L DAL + S L          LV  L        S  
Sbjct: 54  SLRPPSTLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLAS-- 111

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
            AR +FD+  RR  + W+A+  A    G+    L +YRRM     G  +D     +   +
Sbjct: 112 -ARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADN---EFTASS 167

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
            +A++      + G+E+H  V+R G +    + + L DMYA+FG +  A  VF +M V++
Sbjct: 168 ALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRD 227

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           VVSW+AM+  Y   G   E   LF  M+     + PN  T   VL+ACA   + + GK +
Sbjct: 228 VVSWTAMLDRYFDAGRDGEGFRLFVRMMRSG--ILPNEFTYAGVLRACAEFTSEKLGKQV 285

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           HG + +          SALV MY++ G +     VF  M K D+VSW ++IS Y  +G  
Sbjct: 286 HGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQP 345

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +A+  F  ++  G  P  ++FV VL AC+HAGLV++G  +F S++ ++ I  + +HYAC
Sbjct: 346 DEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYAC 405

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
           ++DLL R+   E A  +I  + ++P   +W SLLG CRIH NV LA  A++ LFE+EP N
Sbjct: 406 VIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPEN 465

Query: 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQF 552
              YV LA++YA+  ++DEV+ ++R +E RG+ K+P  S IEV  +++ F+  D+ HPQ 
Sbjct: 466 PATYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQA 525

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
           E+++ALL  L  +M+E+GYV  T  VL+D++ E+K++ +  HSE+LAVAFG+I T KG  
Sbjct: 526 EEIYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSP 585

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I++ KNLR+C DCH+  K ISK   +EI+VRD NRFHHF+NG CSC DYW
Sbjct: 586 IKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/616 (37%), Positives = 354/616 (57%), Gaps = 25/616 (4%)

Query: 61   KQGNLRQALDVLS------IEPNP------TQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
            K G   + LD+ S      +EP+       T+   EL  L       + +  +VH  +  
Sbjct: 468  KNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIR 527

Query: 109  NGFDQD-PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
               D +  FL   L+ +Y+   ++ D   VF+  + +TI  WN L    T  G+ EE L 
Sbjct: 528  RAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALL 587

Query: 168  LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG-YNGIVHIMT 226
            L+ +M   G  +  D ++    L AC   +  FS L  G +IH  +++ G +N  V    
Sbjct: 588  LFVQMQTQG--LMPDSYSLASSLSAC--GTISFSQL--GAQIHGYIIKTGNFNDFVQ--N 639

Query: 227  TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
             LIDMYA+ G V  A  +F ++  K++V+W++MI  +++NG + EA+ LF +M M    +
Sbjct: 640  ALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKM 699

Query: 287  CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
              + +T +SV+QAC+ L  LE+GK +H  ++  GL     + +AL  MY++CG+L++   
Sbjct: 700  --DKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHG 757

Query: 347  VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
            VFD M +R +VSW+ +I+ YG+HG     I +F +M+  G+ P+ I+F+ +L ACSHAG 
Sbjct: 758  VFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGA 817

Query: 407  VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
            VEEGK+ F SM  E  + P  +H+ACMVDLL RA  L  A +II  L       +WG+LL
Sbjct: 818  VEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALL 876

Query: 467  GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
              CRIH  +++ +   K L +++  + G Y LL+++YA    WD+  +V+ +++++GL+K
Sbjct: 877  NGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRK 936

Query: 527  VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            VPG S IE+ +K+Y F   D  H Q + ++  L N  + +  + Y  +    +       
Sbjct: 937  VPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFN 996

Query: 587  KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
            KE  V+ HSEKLA+AFG+INT  G T+RI+KNLR+C DCHSF K  SK   +EI++RD+N
Sbjct: 997  KENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLN 1056

Query: 647  RFHHFRNGVCSCGDYW 662
            RFH FRNG CSC DYW
Sbjct: 1057 RFHCFRNGSCSCNDYW 1072



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 195/429 (45%), Gaps = 65/429 (15%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            +H+HL   G  + P   TKLI  Y+     + ++ VFD   +   ++W  L +     G
Sbjct: 366 QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 425

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC--------------------------- 193
             EE + LY  M        S+ F +  VLKAC                           
Sbjct: 426 FFEEAVSLYHEMVYQDQTQISN-FVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMIS 484

Query: 194 ------------VASSCG---------FSLLKHGKEIHASVLRHGYNGIVHIM-TTLIDM 231
                       V  +C             +K G+ +H  V+R   +  +  +   L+++
Sbjct: 485 EAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMEL 544

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           YA  G +     VF  +  K ++SW+ +I+ + RNG   EAL LF +  M++  L P+S 
Sbjct: 545 YADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQ--MQTQGLMPDSY 602

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           ++ S L AC  ++  + G  IHGYI++ G  +   V +AL+ MYA+CG +     +F+ +
Sbjct: 603 SLASSLSACGTISFSQLGAQIHGYIIKTGNFNDF-VQNALIDMYAKCGFVHSANKMFEKI 661

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG- 410
            ++ +V+WNS+I  +  +GY  +AI +F +M  + V    ++F+SV+ ACSH G +E+G 
Sbjct: 662 KEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGK 721

Query: 411 ----KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
               K++   +RK+  +  +      + D+  +  +L+ A  + + +  E     W  ++
Sbjct: 722 WVHHKLIMYGLRKDSYLDTA------LTDMYSKCGELQMAHGVFDRMS-ERSIVSWSVMI 774

Query: 467 GSCRIHCNV 475
               +H  +
Sbjct: 775 AGYGMHGQI 783



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 13/149 (8%)

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           NS   ++  + CA    L Q   +H ++   GL    P  + L+  YA+ G  E  + VF
Sbjct: 347 NSSRSLTSHKRCATSTTLTQ---LHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVF 403

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACS----- 402
           D   K D   W  LI  Y   G+  +A+ ++ EM+Y   +  S   F SVL ACS     
Sbjct: 404 DTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDL 463

Query: 403 ----HAGLVEEGKMLFESMRKEHMIRPSV 427
                 G   EG  +F  M  E +   SV
Sbjct: 464 SVGGKNGQASEGLDMFSQMISEAVEPDSV 492


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/585 (36%), Positives = 341/585 (58%), Gaps = 21/585 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P Q TY  +L +CT   +      +H+ +   GF  + ++ + LI++Y+    +D A  +
Sbjct: 436 PNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKI 495

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F + +   +  W A+    T   +  E L L++ M   G  I+SD   +   + AC    
Sbjct: 496 FRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQG--IKSDNIGFASAISACA--- 550

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G   L  G++IHA     GY+  + I   L+ +YAR G V  A   F Q+  K+ VSW+
Sbjct: 551 -GIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWN 609

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           ++++ +A++G   EAL +F +M     ++  NS T  S + A A +A +  GK IHG I 
Sbjct: 610 SLVSGFAQSGYFEEALNIFAQMNKAGLEI--NSFTFGSAVSAAANIANVRIGKQIHGMIR 667

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G DS   V +AL+T+YA+CG +             D +SWNS+I+ Y  HG G +A++
Sbjct: 668 KTGYDSETEVSNALITLYAKCGTI-------------DDISWNSMITGYSQHGCGFEALK 714

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F++M    V P+ ++FV VL ACSH GLV+EG   F SM + H + P  EHYAC+VDLL
Sbjct: 715 LFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLL 774

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GR+  L  A + +E++ I+P   VW +LL +C +H N+++ E A+  L ELEP ++  YV
Sbjct: 775 GRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYV 834

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           L++++YA +  WD   R +++++ RG++K PGRS +EV   +++F + D+ HP+ + ++ 
Sbjct: 835 LVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYE 894

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  L     E GYVP+   +L D +  +K+   + HSE+LA+AFGL++ +    + + K
Sbjct: 895 YLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFK 954

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+CEDCH++ K +SK  ++ I+VRD  RFHHF+ G CSC DYW
Sbjct: 955 NLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 193/424 (45%), Gaps = 48/424 (11%)

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
           KLI+ Y  F  ++ A +VFD+   R++  WN +F           V  L+RRM      +
Sbjct: 102 KLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRM--LTKNV 159

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
             D   +  VL+ C  ++  F  ++   +IHA  +  G+     I   LID+Y + G + 
Sbjct: 160 EFDERIFAVVLRGCSGNAVSFRFVE---QIHAKTITSGFESSTFICNPLIDLYFKNGFLS 216

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
            A  VF  +  ++ VSW AMI+  ++NG   EA+ LF ++                VL A
Sbjct: 217 SAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI----------------VLSA 260

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           C  +   E GK +HG +L++G  S   V +ALVT+Y+R G L   + +F  M +RD VS+
Sbjct: 261 CTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSY 320

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           NSLIS     GY  +A+ +FK+M      P  ++  S+L AC+  G +  GK       K
Sbjct: 321 NSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIK 380

Query: 420 EHM-------------------IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE---P 457
             M                   I+ + E + C     G+ + L ++ +I   ++IE   P
Sbjct: 381 AGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCY----GQLDNLNKSFQIFTQMQIEGIVP 436

Query: 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELE-PTNAGNYVLLADVYAAADMWDEVKRVK 516
               + S+L +C      +L E+   ++ +     N     +L D+YA     D   ++ 
Sbjct: 437 NQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIF 496

Query: 517 RLLE 520
           R L+
Sbjct: 497 RRLK 500



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 175/371 (47%), Gaps = 39/371 (10%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +H+    +GF+   F+   LI++Y     +  A+ VF+  + R    W A+   L+  G 
Sbjct: 186 IHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGY 245

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            EE + L+ ++                VL AC          + GK++H  VL+ G++  
Sbjct: 246 EEEAMLLFCQI----------------VLSACTK----VEFFEFGKQLHGLVLKQGFSSE 285

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
            ++   L+ +Y+R G +  A  +F  M+ ++ VS++++I+  A+ G    AL LF++M +
Sbjct: 286 TYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNL 345

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           +     P+ VT+ S+L ACA++ AL  GK  H Y ++ G+ S + V  +L+ +Y +C   
Sbjct: 346 DCQK--PDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCS-- 401

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
                        D+ + +     YG      K+ QIF +M   G+ P+  ++ S+L  C
Sbjct: 402 -------------DIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTC 448

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           +  G  + G+ +   + K    + +V   + ++D+  +  KL+ A KI   L+ E     
Sbjct: 449 TTLGATDLGEQIHTQVLKTGF-QFNVYVSSVLIDMYAKHGKLDHALKIFRRLK-ENDVVS 506

Query: 462 WGSLLGSCRIH 472
           W +++     H
Sbjct: 507 WTAMIAGYTQH 517



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 174/384 (45%), Gaps = 27/384 (7%)

Query: 84  ELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR 143
           +++L +CT          +H  +   GF  + ++   L+ +YS   ++  A  +F    +
Sbjct: 255 QIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQ 314

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
           R    +N+L   L   G     L L+++MN      + D  T   +L AC +       L
Sbjct: 315 RDRVSYNSLISGLAQQGYINRALALFKKMNLDCQ--KPDCVTVASLLSACASVGA----L 368

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
            +GK+ H+  ++ G    + +  +L+D+Y +                 ++ +      CY
Sbjct: 369 PNGKQFHSYAIKAGMTSDIVVEGSLLDLYVK---------------CSDIKTAHEFFLCY 413

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
            +     ++ ++F +M +E   + PN  T  S+L+ C  L A + G+ IH  +L+ G   
Sbjct: 414 GQLDNLNKSFQIFTQMQIEG--IVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQF 471

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            + V S L+ MYA+ GKL+    +F  + + DVVSW ++I+ Y  H    +A+ +FKEM 
Sbjct: 472 NVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQ 531

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHMIRPSVEHYACMVDLLGRANK 442
             G+    I F S + AC+    +++G+ +  +S    +    S+ +   +V L  R  K
Sbjct: 532 DQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGN--ALVSLYARCGK 589

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLL 466
           + EA    + +  +     W SL+
Sbjct: 590 VREAYAAFDQIYAKDNVS-WNSLV 612



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 43/187 (22%)

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           +ME H +  NS T + +L+ C    +   G                     L+  Y   G
Sbjct: 71  LMEQHGVRANSQTFLWLLEGCLNSRSFYDGL-------------------KLIDFYLAFG 111

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            L     VFD M  R +  WN + +++      G+   +F+ M+   V      F  VL 
Sbjct: 112 DLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLR 171

Query: 400 ACS------------HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
            CS            HA  +  G   FES     +  P       ++DL  +   L  A 
Sbjct: 172 GCSGNAVSFRFVEQIHAKTITSG---FES--STFICNP-------LIDLYFKNGFLSSAK 219

Query: 448 KIIEDLR 454
           K+ E+L+
Sbjct: 220 KVFENLK 226


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/593 (37%), Positives = 359/593 (60%), Gaps = 30/593 (5%)

Query: 87  LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI 146
           L  C + N+L     VH+ +   G     + ++ L+N  S F S   A  +F+     T+
Sbjct: 12  LQKCHNLNTLK---QVHAQMLTTGLSFQTYYLSHLLNTSSKFASTY-AFTIFNHIPNPTL 67

Query: 147 YVWNALFRALTL-AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +++N L  +LT  + +      LY  +  T   ++ + FT+  + KAC +       L+H
Sbjct: 68  FLYNTLISSLTHHSDQIHLAFSLYNHI-LTHKTLQPNSFTFPSLFKACASHP----WLQH 122

Query: 206 GKEIHASVLRH---GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           G  +HA VL+     Y+  V    +L++ YA++G +  + ++F Q++  ++ +W+ M+A 
Sbjct: 123 GPPLHAHVLKFLQPPYDPFVQ--NSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAA 180

Query: 263 YARNG-------------MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
           YA++              M+ EAL LF +M +    + PN VT+V+++ AC+ L AL QG
Sbjct: 181 YAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQ--IKPNEVTLVALISACSNLGALSQG 238

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
              HGY+LR  L     V +ALV MY++CG L L   +FD +  RD   +N++I  + VH
Sbjct: 239 AWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVH 298

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G+G +A+++++ M    + P   + V  + ACSH GLVEEG  +FESM+  H + P +EH
Sbjct: 299 GHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEH 358

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
           Y C++DLLGRA +L+EA + ++D+ ++P   +W SLLG+ ++H N+E+ E A K L ELE
Sbjct: 359 YGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELE 418

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFH 549
           P  +GNYVLL+++YA+   W++VKRV+ L++  G+ K+PG S +E+   M+ F++ D+ H
Sbjct: 419 PETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAH 478

Query: 550 PQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSK 609
           P  +++++ +  ++  + E G+ P+T  VL+D++ E+KE  +  HSE+LA+AF LI +S 
Sbjct: 479 PFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSS 538

Query: 610 GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              IRI KNLR+C DCH+ TK IS    ++I+VRD NRFHHF++G CSC DYW
Sbjct: 539 SMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 8/192 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T   L+ +C++  +LS     H ++  N    + F+ T L+++YS    ++ A  +
Sbjct: 217 PNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQL 276

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+   R  + +NA+     + G G + LELYR M      +  D  T    + AC    
Sbjct: 277 FDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMK--LEDLVPDGATIVVTMFACSHG- 333

Query: 198 CGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVS 255
               L++ G EI  S+   HG    +     LID+  R G +  A      M +K N + 
Sbjct: 334 ---GLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAIL 390

Query: 256 WSAMIACYARNG 267
           W +++     +G
Sbjct: 391 WRSLLGAAKLHG 402


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/632 (36%), Positives = 368/632 (58%), Gaps = 13/632 (2%)

Query: 25  LPPKP-SSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPT-QHT 82
            PP+  S +     LNS   P  +S  +++E ++       LR + + L     P  +  
Sbjct: 5   FPPRLLSQLKLSRRLNS--LPAPVSEDSEDESLKFPSNDLLLRTSSNDLEGSYIPADRRF 62

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  LL  CT    L     VH+H+  + F  D  +   L+N+Y+   S+++AR VF+K  
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           +R    W  L    +   R  + L  + +M     G   + FT + V+KA  A   G   
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQM--LRFGYSPNEFTLSSVIKAAAAERRGCC- 179

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
              G ++H   ++ G++  VH+ + L+D+Y R+G +  A  VF  +  +N VSW+A+IA 
Sbjct: 180 ---GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAG 236

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           +AR     +ALELF+ M+ +     P+  +  S+  AC++   LEQGK +H Y+++ G  
Sbjct: 237 HARRSGTEKALELFQGMLRDG--FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEK 294

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
            +    + L+ MYA+ G +   + +FD + KRDVVSWNSL+++Y  HG+G +A+  F+EM
Sbjct: 295 LVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEM 354

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              G+ P+ ISF+SVL ACSH+GL++EG   +E M+K+ ++ P   HY  +VDLLGRA  
Sbjct: 355 RRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIV-PEAWHYVTVVDLLGRAGD 413

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           L  A + IE++ IEP   +W +LL +CR+H N EL   A++ +FEL+P + G +V+L ++
Sbjct: 414 LNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNI 473

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           YA+   W++  RV++ ++  G++K P  S +E++  ++ FV+ DE HPQ E++      +
Sbjct: 474 YASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEV 533

Query: 563 SAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLC 622
            A++KE GYVP T  V+  +D +E+E  +  HSEK+A+AF L+NT  G TI I KN+R+C
Sbjct: 534 LAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVC 593

Query: 623 EDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
            DCH+  K  SK   +EI+VRD NRFHHF++ 
Sbjct: 594 GDCHTAIKLASKVVGREIIVRDTNRFHHFKDA 625


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/562 (40%), Positives = 333/562 (59%), Gaps = 42/562 (7%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A+ +F   +     ++N+L RAL+ +    E L LY  M    +G++ D  TY +V+KAC
Sbjct: 119 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTM--LQSGLKPDHMTYPFVIKAC 176

Query: 194 VASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR---FGCVM---------- 239
             SS   F LL     +H  V++ G+    +I+++LI +YA     G             
Sbjct: 177 NESSVTWFGLL-----VHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARD 231

Query: 240 ------------------YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
                             +A  VF +M  ++V+SW+ MI  YA  G   EAL LF +M  
Sbjct: 232 VVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQM-- 289

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
            +  + P   T+VS+L ACA L AL++G  +H YI    ++    V +ALV MYA+CGK+
Sbjct: 290 RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKI 349

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
            L   VF+ M+ +DV++WN++I+   +HG   +A Q+FKEM   GV P+ I+FV++L AC
Sbjct: 350 SLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSAC 409

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SHAG+V+EG+ L + M   + I P VEHY C++DLL RA  LEEA ++I  + +EP P  
Sbjct: 410 SHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSA 469

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
            G+LLG CRIH N EL E   KRL  L+P ++G Y+LL+++YAAA  WD+ ++V+ L++ 
Sbjct: 470 LGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKV 529

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK-GYVPQTKVVLY 580
            G+ KVPG S IE+K  ++ FV+ D  HP+  +++  L  +   +K   GY   T  VL 
Sbjct: 530 NGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLL 589

Query: 581 DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEI 640
           D++ E+KE  +  HSEKLA+A+GL++    E IRI KNLR+C DCH   K ISK   +EI
Sbjct: 590 DMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREI 649

Query: 641 LVRDVNRFHHFRNGVCSCGDYW 662
           +VRD NRFHHF +G CSC D+W
Sbjct: 650 IVRDRNRFHHFEDGECSCLDFW 671



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 196/449 (43%), Gaps = 84/449 (18%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI++L       +AL +    L     P   TY  ++ +C   +     L VH+H+  
Sbjct: 135 NSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVK 194

Query: 109 NGFDQDPFLVTKLINVYSH---------------------FDSVDD----------ARHV 137
           +GF+ D ++V+ LI++Y++                     ++++ D          AR V
Sbjct: 195 SGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMV 254

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+   R +  WN +     + G+  E L L+ +M     G++    T   +L AC    
Sbjct: 255 FDRMVCRDVISWNTMINGYAICGKPNEALALFDQMR--AVGVKPTEATVVSLLSACAH-- 310

Query: 198 CGFSLLKHGKEIHASV--LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
                L  G  +H  +   R   N IV   T L+DMYA+ G +  A  VF+ M  K+V++
Sbjct: 311 --LGALDKGLHLHTYINDNRIEVNSIVG--TALVDMYAKCGKISLATQVFNAMESKDVLA 366

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+ +IA  A +G   EA +LF+E  M+   + PN +T V++L AC+    +++G+ +   
Sbjct: 367 WNTIIAGMAIHGNVKEAQQLFKE--MKEAGVEPNDITFVAILSACSHAGMVDEGQKL--- 421

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
                       +  + + Y    K+E   CV D + +                G+  +A
Sbjct: 422 ------------LDCMSSSYGIEPKVEHYGCVIDLLARA---------------GFLEEA 454

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-VEHYACMV 434
           +++   M    + P+P +  ++LG C   G  E G+M+ + +     ++P     Y  + 
Sbjct: 455 MELIGTM---PMEPNPSALGALLGGCRIHGNFELGEMVGKRLIN---LQPCHSGRYILLS 508

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
           ++   A K ++A K+   +++    KV G
Sbjct: 509 NIYAAAKKWDDARKVRNLMKVNGISKVPG 537



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 159/347 (45%), Gaps = 39/347 (11%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM-YAGFVFSQMAVKNVVSWSAMIA 261
           L+H K++HA ++ H  +         +   + F   + YA  +F  +       ++++I 
Sbjct: 80  LRHLKQVHAQIITHHNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIR 139

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
             + +    EAL L+  M+     L P+ +T   V++AC   +    G ++H ++++ G 
Sbjct: 140 ALSSSKTPLEALPLYHTMLQSG--LKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGF 197

Query: 322 DSILPVVSALVTMYARCGKL-----------------------------ELGQC--VFDH 350
           +    +VS+L+ +YA    L                             E+G    VFD 
Sbjct: 198 ECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDR 257

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M  RDV+SWN++I+ Y + G   +A+ +F +M   GV P+  + VS+L AC+H G +++G
Sbjct: 258 MVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG 317

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
             L   +    +   S+   A +VD+  +  K+  A ++   +        W +++    
Sbjct: 318 LHLHTYINDNRIEVNSIVGTA-LVDMYAKCGKISLATQVFNAME-SKDVLAWNTIIAGMA 375

Query: 471 IHCNVELAERASKRLFE--LEPTNAGNYVLLADVYAAADMWDEVKRV 515
           IH NV+ A++  K + E  +EP N   +V +    + A M DE +++
Sbjct: 376 IHGNVKEAQQLFKEMKEAGVEP-NDITFVAILSACSHAGMVDEGQKL 421


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/581 (39%), Positives = 347/581 (59%), Gaps = 12/581 (2%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           YE ++ +  H   L  A   H+HL   G  +   L+TKL+ +     S+   R +F    
Sbjct: 13  YEAVVSAGPHLRRLQQA---HAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVS 69

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
               +++N+L +A +  G   + +  YRRM    + I    +T+T V+KAC       SL
Sbjct: 70  DPDSFLFNSLIKASSKFGFSLDAVLFYRRM--LLSRIVPSTYTFTSVIKACA----DLSL 123

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L  G  +H+ V   GY     +   LI  YA+      A  VF +M  +++V+W++MI+ 
Sbjct: 124 LCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISG 183

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y +NG+A EA+E+F +M      + P+S T VSVL AC+ L +L+ G  +H  I+  G+ 
Sbjct: 184 YEQNGLANEAVEVFNKM--RESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGIT 241

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             + + ++LV M++RCG +   + VF  M + +VV W ++IS YG+HGYG +A+++F  M
Sbjct: 242 MNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRM 301

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              GV P+ ++FV+VL AC+HAGL++EG+ +F SM++E+ + P VEH+ CMVD+ GR   
Sbjct: 302 KARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGL 361

Query: 443 LEEAAKIIEDLRI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
           L EA + ++ L   E  P VW ++LG+C++H N +L    ++ L   EP N G+YVLL++
Sbjct: 362 LNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSN 421

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YA A   D V+ V+ ++  RGL+K  G S I+V  + Y F   D+ HP+  +++  L  
Sbjct: 422 MYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDE 481

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           L    K+ GY P  +  +++L+ EE+E  +  HSEKLAVAFGL+ T  G T+RI KNLR+
Sbjct: 482 LIWRCKDAGYAPVPESAMHELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRI 541

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CEDCHS  KFIS   N+EI+VRD  RFHHFR G CSC DYW
Sbjct: 542 CEDCHSAIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 153/311 (49%), Gaps = 15/311 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P+ +T+  ++ +C   + L     VHSH+  +G+  D F+   LI  Y+   +   AR V
Sbjct: 106 PSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKV 165

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+  +R+I  WN++       G   E +E++ +M    + +  D  T+  VL AC    
Sbjct: 166 FDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMR--ESRVEPDSATFVSVLSACSQ-- 221

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  G  +H  ++  G    V + T+L++M++R G V  A  VF  M   NVV W+
Sbjct: 222 --LGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWT 279

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI+ Y  +G   EA+E+F    M++  + PNSVT V+VL ACA    +++G+ +   + 
Sbjct: 280 AMISGYGMHGYGVEAMEVFHR--MKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMK 337

Query: 318 RRGLDSILPVVS---ALVTMYARCGKLELGQCVFDHMDKRDVVS--WNSLISSYGVHGYG 372
           +     ++P V     +V M+ R G L         ++  ++V   W +++ +  +H   
Sbjct: 338 QE--YGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNF 395

Query: 373 GKAIQIFKEMI 383
              +++ + +I
Sbjct: 396 DLGVEVAENLI 406


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/621 (37%), Positives = 358/621 (57%), Gaps = 42/621 (6%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E  P   T   ++ +C     L     V++ + ++G + +  +V+ L+++Y   +++D A
Sbjct: 231 EVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVA 290

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           + +FD+     + + NA+       G   E L ++  M    +G+R DR +    + +C 
Sbjct: 291 KRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM--MDSGVRPDRISMLSAISSC- 347

Query: 195 ASSCGFSLLKH---GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
                 S L++   GK  H  VLR+G+    +I   LIDMY +      A  +F +M+ K
Sbjct: 348 ------SQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 401

Query: 252 NVVSWSAMIACYARNG---MAFEALE---------------------LFREMI-----ME 282
            VV+W++++A Y  NG    A+E  E                     LF E I     M+
Sbjct: 402 TVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQ 461

Query: 283 SHD-LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           S + +  + VTM+S+  AC  L AL+  K I+ YI + G+   + + + LV M++RCG  
Sbjct: 462 SQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDP 521

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           E    +F+ +  RDV +W + I +  + G   +AI++F +MI  G+ P  ++FV  L AC
Sbjct: 522 ESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTAC 581

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SH GLV++GK +F SM K H + P   HY CMVDLLGRA  LEEA ++IED+ +EP   +
Sbjct: 582 SHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVI 641

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W SLL +CR+  NVE+A  A++++  L P   G+YVLL++VYA+A  W+++ +V+  ++ 
Sbjct: 642 WNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKE 701

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           +GL+K PG S I+++ K + F S DE HP+   + A+L  +S      G+VP    VL D
Sbjct: 702 KGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMD 761

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           +D +EK  ++  HSEKLA+A+GLI+++KG TIRI KNLR+C DCHSF KF SK  N+EI+
Sbjct: 762 VDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREII 821

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           +RD NRFH+ R G CSCGD+W
Sbjct: 822 LRDNNRFHYIRQGKCSCGDFW 842



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 170/313 (54%), Gaps = 11/313 (3%)

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHF---DSVDDARHVFDKTRRR-TIYVWNALFRALTL 158
           H  LT  G D D   +TKL+         +S+  A+ VF+ +    T +++N+L R    
Sbjct: 52  HRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYAS 111

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +G   E + L+ RM    +GI  D++T+ + L AC  S        +G +IH  +++ GY
Sbjct: 112 SGLCNEAILLFLRM--MNSGISPDKYTFPFGLSACAKSRAK----GNGIQIHGLIVKMGY 165

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
              + +  +L+  YA  G +  A  VF +M+ +NVVSW++MI  YAR   A +A++LF  
Sbjct: 166 AKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFR 225

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M+ +  ++ PNSVTMV V+ ACA L  LE G+ ++ +I   G++    +VSALV MY +C
Sbjct: 226 MVRD-EEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKC 284

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
             +++ + +FD     ++   N++ S+Y   G   +A+ +F  M+  GV P  IS +S +
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAI 344

Query: 399 GACSHAGLVEEGK 411
            +CS    +  GK
Sbjct: 345 SSCSQLRNILWGK 357



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 199/438 (45%), Gaps = 46/438 (10%)

Query: 53  NELIQSLCKQGNLRQA----LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI+     G   +A    L +++   +P ++T+   L +C    +  + + +H  +  
Sbjct: 103 NSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVK 162

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+ +D F+   L++ Y+    +D AR VFD+   R +  W ++          ++ ++L
Sbjct: 163 MGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDL 222

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           + RM      +R +  T   V   CV S+C     L+ G++++A +   G      +++ 
Sbjct: 223 FFRM------VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSA 276

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+DMY +   +  A  +F +    N+   +AM + Y R G+  EAL +F   +M    + 
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFN--LMMDSGVR 334

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+ ++M+S + +C+ L  +  GK  HGY+LR G +S   + +AL+ MY +C + +    +
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM------------------------- 382
           FD M  + VV+WNS+++ Y  +G    A + F+ M                         
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAI 454

Query: 383 -------IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
                     GV+   ++ +S+  AC H G ++  K ++  + K + I+  V     +VD
Sbjct: 455 EVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEK-NGIQLDVRLGTTLVD 513

Query: 436 LLGRANKLEEAAKIIEDL 453
           +  R    E A  I   L
Sbjct: 514 MFSRCGDPESAMSIFNSL 531



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 140/293 (47%), Gaps = 8/293 (2%)

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
           VL L   +  T T  +      +   KA  +S      +   K  H S+ + G +  V  
Sbjct: 7   VLHLSPMVLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVST 66

Query: 225 MTTLIDMYARFGC---VMYAGFVF-SQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
           +T L+      G    + +A  VF +  +      ++++I  YA +G+  EA+ LF  M+
Sbjct: 67  ITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMM 126

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
             +  + P+  T    L ACA   A   G  IHG I++ G    L V ++LV  YA CG+
Sbjct: 127 --NSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGE 184

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY-HGVSPSPISFVSVLG 399
           L+  + VFD M +R+VVSW S+I  Y    +   A+ +F  M+    V+P+ ++ V V+ 
Sbjct: 185 LDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVIS 244

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           AC+    +E G+ ++  +R    I  +    + +VD+  + N ++ A ++ ++
Sbjct: 245 ACAKLEDLETGEKVYAFIRNSG-IEVNDLMVSALVDMYMKCNAIDVAKRLFDE 296


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/586 (37%), Positives = 354/586 (60%), Gaps = 14/586 (2%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           +Q TY  ++  C +   L+ A  +HS +  +GF  D  ++T +++ YS    +DDA ++F
Sbjct: 301 SQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIF 360

Query: 139 D-KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
                 + +  W A+               L+ RM      ++ + FTY+ VL A +   
Sbjct: 361 LLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDN--VKPNEFTYSTVLTASIPI- 417

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
               LL    +IHA +++  Y     + T L+  Y++ G    A  +F  +  K+VV+WS
Sbjct: 418 ----LLP---QIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWS 470

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA-LAALEQGKMIHGYI 316
           AM++CY++ G    A  +F +M M+   + PN  T+ S + ACA+  A ++QG+  H   
Sbjct: 471 AMLSCYSQAGDCDGATNVFIKMSMQG--MKPNEFTISSAIDACASPTAGIDQGRQFHAIS 528

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++      + V SALVTMYAR G ++  + VF+    RD+VSWNS+IS Y  HGY  +A+
Sbjct: 529 IKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEAL 588

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
             F++M   G+     +F++V+  C+HAGLV+EG+  F+SM  +H I P++EHY+CMVDL
Sbjct: 589 DTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDL 648

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
             RA KL+E   +IE +    G  VW +LLG+CR+H NVEL + A+++L  LEP ++  Y
Sbjct: 649 YSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATY 708

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++YAAA  W E   V++L++++ ++K  G S I++K K++SF++ D+ HP  EQ++
Sbjct: 709 VLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIY 768

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
           A L  ++  +K++GY P T VVL+D+  E+KE +++ HSE+LA+AFGLI T     ++I 
Sbjct: 769 AKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPRTPLQIV 828

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH   K +S   ++EI++RD +RFHHF  G CSCGD+W
Sbjct: 829 KNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 190/395 (48%), Gaps = 18/395 (4%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           + PNP   T+  +L +     ++     VH+     G     F+   LIN+YS    V++
Sbjct: 197 VWPNP--FTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEE 254

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A+ VF +   R +  WN L   L L     E L+L+   +   +  +  + TY+ V+K C
Sbjct: 255 AKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFH--DSRASMAKLSQSTYSTVIKLC 312

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM-AVKN 252
                    L   +++H+ VL+HG++   ++MT ++D Y++ G +  A  +F  M   +N
Sbjct: 313 A----NLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQN 368

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           VVSW+AMI    +N     A  LF    M   ++ PN  T  +VL A   +  L Q   I
Sbjct: 369 VVSWTAMIGGCIQNADIPLAAALFSR--MREDNVKPNEFTYSTVLTASIPI-LLPQ---I 422

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           H  I++        V +AL+  Y++ G  E    +F  +D +DVV+W++++S Y   G  
Sbjct: 423 HAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDC 482

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGAC-SHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             A  +F +M   G+ P+  +  S + AC S    +++G+  F ++  ++  + ++   +
Sbjct: 483 DGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQ-FHAISIKYRYQDAICVGS 541

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
            +V +  R   + ++A+I+ + + +     W S++
Sbjct: 542 ALVTMYARKGSI-DSARIVFERQTDRDLVSWNSMI 575



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 147/293 (50%), Gaps = 10/293 (3%)

Query: 110 GFDQDPFLV-TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           GFD+    V T L+++Y     V+D R VF+   +R +  W +L           +V+ L
Sbjct: 129 GFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMAL 188

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + RM     G+  + FT+T VL A VAS     L   G+ +HA  ++ G    V +  +L
Sbjct: 189 FFRMR--AEGVWPNPFTFTSVLSA-VASQGAVDL---GRRVHAQSVKFGCRSTVFVCNSL 242

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I+MY++ G V  A  VF QM  +++VSW+ ++A    N    EAL+LF +       L  
Sbjct: 243 INMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKL-- 300

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +  T  +V++ CA L  L   + +H  +L+ G  S   V++A++  Y++CG+L+    +F
Sbjct: 301 SQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIF 360

Query: 349 DHM-DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
             M   ++VVSW ++I     +     A  +F  M    V P+  ++ +VL A
Sbjct: 361 LLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTA 413



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 146/286 (51%), Gaps = 10/286 (3%)

Query: 206 GKEIHASVLRHGYN-GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           G+++H   ++ G++   V + T L+DMY + G V     VF  M  +NVV+W++++  Y 
Sbjct: 118 GEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYV 177

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           +     + + LF  M  E   + PN  T  SVL A A+  A++ G+ +H   ++ G  S 
Sbjct: 178 QGRACSDVMALFFRMRAEG--VWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRST 235

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + V ++L+ MY++CG +E  + VF  M+ RD+VSWN+L++   ++ +  +A+Q+F +   
Sbjct: 236 VFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRA 295

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
                S  ++ +V+  C++   +   + L   + K H           ++D   +  +L+
Sbjct: 296 SMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLK-HGFHSDGNVMTAIMDAYSKCGELD 354

Query: 445 EAAKIIEDLRIEPGPK---VWGSLLGSCRIHCNVELAERASKRLFE 487
           +A  I     + PG +    W +++G C  + ++ LA     R+ E
Sbjct: 355 DAFNI---FLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMRE 397


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/591 (38%), Positives = 348/591 (58%), Gaps = 22/591 (3%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+  ++ +C +H  L   L  HS    +GFD    +   L+  YS    +++A  VF+  
Sbjct: 142 TFSGVITACCNHVGLIRQL--HSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGM 199

Query: 142 RR--RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK--ACVASS 197
               R    WN++  A     RG + L LYR M     G   D FT   VL   +CV   
Sbjct: 200 GEEVRDEVSWNSMIVAYGQHKRGLKALALYRDM--VHRGFEIDMFTLASVLTTFSCVEDL 257

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF-VFSQMAVKNVVSW 256
            G      G + HA  ++ G+N   H+ + LIDMYA+ G  M     VF ++   ++V W
Sbjct: 258 SG------GLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVW 311

Query: 257 SAMIACYARNG-MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           + MI+ Y++N  ++ EALE FR+M  +     P+  + V  + AC+ L++  QGK  H  
Sbjct: 312 NTMISGYSQNKELSVEALECFRQM--QRAGYWPDDCSFVCAISACSNLSSPSQGKQFHAL 369

Query: 316 ILRRGLDS-ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            ++  + S  + V +ALVTMY++CG L+  + +F  M + + V+ NS+I+ Y  HG G +
Sbjct: 370 AMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTE 429

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           ++ +F++M+   ++P+ I+ VS+L AC+H G VEEGK  F  M+    I P  EHY+CM+
Sbjct: 430 SLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMI 489

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           DLLGRA KL EA ++I+ +   PG   W +LLG+CR + N+ELAE+A+ +  +LEPTNA 
Sbjct: 490 DLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAV 549

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
            Y++LA +Y+AA  W+E  R+++L+  RG++K PG S IE+ ++++ FV+ D  HP+ ++
Sbjct: 550 PYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKE 609

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLD---AEEKERIVLGHSEKLAVAFGLINTSKGE 611
           +H  L  +  +MK  GYVP  +      D    +EKE ++  HSEKLAVAFGL+ T  GE
Sbjct: 610 IHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGE 669

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            + + KNLR+C DCH+  KF+S  A ++I VRD  RFH F +G CSCGDYW
Sbjct: 670 PLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 182/410 (44%), Gaps = 45/410 (10%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           T  ++  +L SC  +  L    ++H+    +      +L    I +YS  + +  A H F
Sbjct: 7   TLQSFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAF 66

Query: 139 DKTRRRTIYVWNALFRAL-----------------------------TLAGRGEEV--LE 167
           ++T    ++ +NAL  A                                A RG+ +  L 
Sbjct: 67  NQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALS 126

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+  M     G+  D FT++ V+ AC    C    L   +++H+     G++  V +  +
Sbjct: 127 LFGEMR--EMGLVMDGFTFSGVITAC----CNHVGLI--RQLHSLAFSSGFDSYVSVKNS 178

Query: 228 LIDMYARFGCVMYAGFVFSQMA--VKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           L+  Y++ G +  A  VF+ M   V++ VSW++MI  Y ++    +AL L+R+M+    +
Sbjct: 179 LLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFE 238

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK-LELG 344
           +  +  T+ SVL   + +  L  G   H   ++ G +    V S L+ MYA+CG  +   
Sbjct: 239 I--DMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSES 296

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHG-YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
           + VF+ +   D+V WN++IS Y  +     +A++ F++M   G  P   SFV  + ACS+
Sbjct: 297 RKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSN 356

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
                +GK       K  +    +     +V +  +   L++A K+ + +
Sbjct: 357 LSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRM 406


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/633 (35%), Positives = 362/633 (57%), Gaps = 44/633 (6%)

Query: 60  CKQGNLRQALDVLSIEPNPTQHTYELLL----LSCTHHNSLSDALNVHSHLTDNGFDQDP 115
            + G+L  A  V    P  +  ++  LL    LS  H  + +        L D   ++D 
Sbjct: 34  ARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKT--------LFDTMQERDL 85

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
              T ++ V + F +++DA++ FD+   R +  W A+  A    G+ E   E + +M   
Sbjct: 86  IAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAERGQMENARETFDQMP-- 143

Query: 176 GTGIRSDRFTYTYVLKACVASS-----------------CGFSLLKHGKEIHASVLR--H 216
                 + F++T +L A   S                    ++ +  G  +   V+R   
Sbjct: 144 ----ERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKR 199

Query: 217 GYNGIVH----IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
            ++ +        T ++  YA  G + Y   +F +M  ++++SW+ M+A    N +  E+
Sbjct: 200 AFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLLEES 259

Query: 273 LELFREMIME---SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            ELF  M      S  + PN VT +++L AC+ L AL +G+ IH  +  RG D+ L V +
Sbjct: 260 KELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSN 319

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           ALV  Y RCG L   + VFD M +RDV+SW+S+IS++   G   +A++++  M+  G  P
Sbjct: 320 ALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLP 379

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
             I F+SVL ACS++G+VE     F S+  +  + P++EHYACMVD+LGRA KL +A  +
Sbjct: 380 DDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDL 439

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
           +  +   PGP ++ ++L +C+++ +VE  E A++ +FEL+P N+  Y+ LA++Y+AA   
Sbjct: 440 LRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRP 499

Query: 510 DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569
            +  R+++L+E RG++K PG S IEV  +++ F++ D+ HPQ ++++A +  L  +MKE 
Sbjct: 500 KDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEA 559

Query: 570 GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
           GY   TKVVL D++ +EKE ++  HSEKLA+AFGLI+T  G  +RI KNLR+C DCH+ T
Sbjct: 560 GYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAAT 619

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K ISK   +EILVRD NRFHHF+NG+CSC DYW
Sbjct: 620 KVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 159/354 (44%), Gaps = 42/354 (11%)

Query: 112 DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR 171
           D+D F    ++++Y+    + +A+ VFD+  R ++  W AL  A  L+G  EE   L+  
Sbjct: 20  DRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDT 79

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           M         D   +T +L         FS ++  K     +        +   T ++  
Sbjct: 80  MQ------ERDLIAWTIMLTVLAT----FSNIEDAKYHFDQMPERD----LVAWTAMLAA 125

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
            A  G +  A   F QM  +N+ SW+++++ Y R+G    A  +F  M        P   
Sbjct: 126 NAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSM--------PE-- 175

Query: 292 TMVSVLQACAALAALEQGKMIHGYILR--RGLDSI----LPVVSALVTMYARCGKLELGQ 345
                     A  A+  G  + G ++R  R  DS+    L   +A+++ YA  G L   +
Sbjct: 176 ------WNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTR 229

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-----GVSPSPISFVSVLGA 400
            +F  M +RD++SW +++++   +    ++ ++F  M  H     G++P+ ++F+++L A
Sbjct: 230 EIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDA 289

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           CS  G + EG+ +  ++ +       V   A +V+  GR   L +A  + + +R
Sbjct: 290 CSFLGALAEGRKIHAAVAERGFDTDLVVSNA-LVNFYGRCGALGDAKIVFDGMR 342



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 41/222 (18%)

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM----------- 279
           M+ R GCV  A  +F  +A ++  SW  M++ YAR+G    A  +F  M           
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTAL 60

Query: 280 ------------------IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
                              M+  DL   ++ M++VL   A  + +E  K    Y   +  
Sbjct: 61  LSAFALSGHHEEAKTLFDTMQERDLIAWTI-MLTVL---ATFSNIEDAK----YHFDQMP 112

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           +  L   +A++   A  G++E  +  FD M +R++ SW SL+S+YG  G    A ++F  
Sbjct: 113 ERDLVAWTAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDS 172

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           M    +    +++ ++L   S +G V   K  F+SM +  +I
Sbjct: 173 MPEWNL----VAWTAMLTGYSLSGDVVRAKRAFDSMPERDLI 210


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/589 (37%), Positives = 357/589 (60%), Gaps = 12/589 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF---DSVDDA 134
           P + T   ++ +C     LS     H  +  +G D D  +   L+++Y+      SVDDA
Sbjct: 143 PDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDA 202

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGE-EVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           R VFD+     +  W A+      +G  + E +EL+  M      ++ + FT++ VLKAC
Sbjct: 203 RKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEM--VQGQVKPNHFTFSSVLKAC 260

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                  S +  G++++A V++     I  +  +LI MY+R G +  A   F  +  KN+
Sbjct: 261 A----NLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNL 316

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VS++ ++  YA++  + EA ELF E+  E      N+ T  S+L   +++ A+ +G+ IH
Sbjct: 317 VSYNTIVNAYAKSLNSEEAFELFNEI--EGAGTGVNAFTFASLLSGASSIGAIGKGEQIH 374

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             IL+ G  S L + +AL++MY+RCG +E    VF+ M   +V+SW S+I+ +  HG+  
Sbjct: 375 SRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFAT 434

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A++ F +M+  GVSP+ +++++VL ACSH GL+ EG   F+SM+ EH I P +EHYAC+
Sbjct: 435 RALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACV 494

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLLGR+  LEEA +++  +  +    V  + LG+CR+H N++L + A++ + E +P + 
Sbjct: 495 VDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDP 554

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
             Y+LL++++A+A  W+EV  +++ ++ R L K  G S IEV+ K++ F   D  HPQ +
Sbjct: 555 AAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQ 614

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           +++  L  L+ ++KE GY+P T  VL+D++ E+KE+ +  HSEK+AVA+G I+TS    I
Sbjct: 615 EIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPI 674

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+ KNLR+C DCH+  K+ S    KEI++RD NRFHHF++G CSC DYW
Sbjct: 675 RVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 201/391 (51%), Gaps = 15/391 (3%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG-FDQDPFLVTKLINVYSH 127
            D+L     P ++ +  +  +C++  ++S    +   L   G F+ D  +   LI+++  
Sbjct: 31  FDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVK 90

Query: 128 FDS-VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
            +  ++ A  VFD+   R +  W  +       G   + ++L+  M    +G   DRFT 
Sbjct: 91  GNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDM--VLSGYVPDRFTL 148

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF---GCVMYAGF 243
           + V+ AC        LL  G++ H  V++ G +  V +  +L+DMYA+    G V  A  
Sbjct: 149 SGVVSACAE----MGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARK 204

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMA-FEALELFREMIMESHDLCPNSVTMVSVLQACAA 302
           VF +M V NV+SW+A+I  Y ++G    EA+ELF EM+     + PN  T  SVL+ACA 
Sbjct: 205 VFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV--QGQVKPNHFTFSSVLKACAN 262

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           L+ +  G+ ++  +++  L SI  V ++L++MY+RCG +E  +  FD + ++++VS+N++
Sbjct: 263 LSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTI 322

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           +++Y       +A ++F E+   G   +  +F S+L   S  G + +G+ +   + K   
Sbjct: 323 VNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSG- 381

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            + ++     ++ +  R   +E A ++  ++
Sbjct: 382 FKSNLHICNALISMYSRCGNIEAAFQVFNEM 412



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 162/317 (51%), Gaps = 15/317 (4%)

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           +R +  W+AL        +  E +  +  M     G   + + +T V +AC ++    SL
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDM--LECGFYPNEYCFTGVFRAC-SNKENISL 60

Query: 203 LKHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFGCVMYAGF-VFSQMAVKNVVSWSAMI 260
              GK I   +L+ GY    V +   LIDM+ +    + + + VF +M  +NVV+W+ MI
Sbjct: 61  ---GKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMI 117

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             + + G + +A++LF +M++  +   P+  T+  V+ ACA +  L  G+  H  +++ G
Sbjct: 118 TRFQQLGFSRDAVDLFLDMVLSGY--VPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSG 175

Query: 321 LDSILPVVSALVTMYARC---GKLELGQCVFDHMDKRDVVSWNSLISSY-GVHGYGGKAI 376
           LD  + V  +LV MYA+C   G ++  + VFD M   +V+SW ++I+ Y    G   +AI
Sbjct: 176 LDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAI 235

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           ++F EM+   V P+  +F SVL AC++   +  G+ ++  + K  +   +    + ++ +
Sbjct: 236 ELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNS-LISM 294

Query: 437 LGRANKLEEAAKIIEDL 453
             R   +E A K  + L
Sbjct: 295 YSRCGNMENARKAFDVL 311



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           +KRD+VSW++LIS Y  +    +AI  F +M+  G  P+   F  V  ACS+   +  GK
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRAN-KLEEAAKIIEDL 453
           ++F  + K       V     ++D+  + N  LE A K+ + +
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRM 105


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/640 (36%), Positives = 366/640 (57%), Gaps = 50/640 (7%)

Query: 27  PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELL 86
           PKP         NS++ P SL S ++ ++I  L +  ++ Q L +               
Sbjct: 14  PKPHP-------NSNSNPKSLKSLDQKQIISLLQRSKHINQVLPI--------------- 51

Query: 87  LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI 146
                           H+ L  NG  QDPF+V +L+   S   ++D A  +F  T    +
Sbjct: 52  ----------------HAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNV 95

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206
           Y++ AL      +G   + ++LY RM      I  D +    +LKAC +       L+ G
Sbjct: 96  YLYTALIDGFVSSGNYFDAIQLYSRM--LHDSILPDNYLMASILKACGSQLA----LREG 149

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM----AVKNVVSWSAMIAC 262
           +E+H+  L+ G +    +   ++++Y + G +  A  VF +M      K+ V W+AMI  
Sbjct: 150 REVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDG 209

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           + RN     ALE FR M  +  ++ PN  T+V VL AC+ L ALE G+ +H Y+ +  ++
Sbjct: 210 FVRNEEMNRALEAFRGM--QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIE 267

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             L V +AL+ MY+RCG ++  Q VFD M  RDV+++N++IS   ++G   +AI++F+ M
Sbjct: 268 LNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVM 327

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
           I   + P+ ++FV VL ACSH GLV+ G  +F SM +++ + P +EHY CMVDLLGR  +
Sbjct: 328 IGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGR 387

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           LEEA  +I  +++ P   + G+LL +C++H N+EL E+ +K L +    ++G YVLL+ V
Sbjct: 388 LEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHV 447

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           YA++  W E  +V+  ++  G+QK PG S IEV  +++ F+  D  HP+ E+++  L  L
Sbjct: 448 YASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEEL 507

Query: 563 SAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLC 622
           +  ++ +GY P+ +VVL D++  EKE  +  HSE+LA+ +GLI+T     IR+ KNLR+C
Sbjct: 508 NRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVC 567

Query: 623 EDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            DCHS  K I+K   ++++VRD NRFH+F NG CSCGDYW
Sbjct: 568 YDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/633 (36%), Positives = 352/633 (55%), Gaps = 35/633 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N L+    + G + +A +V    P     ++  LL +  H+  + +A      L ++  D
Sbjct: 146 NSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEAC----LLFESKSD 201

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            D      L+  +     + DAR +FDK   R    WN +       G   +   L+   
Sbjct: 202 WDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE- 260

Query: 173 NGTGTGIRSDRFTYTYVLKACVA------SSCGFSLLKHGKEIHASVLRHGYNGI----- 221
                    D FT+T ++   V       +   F  +    E+  + +  GY        
Sbjct: 261 -----SPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDI 315

Query: 222 ------------VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
                       +    T+I  Y + G +  A   F  M  ++ VSW+A+IA YA++G  
Sbjct: 316 ARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHY 375

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EAL +F E+  +   L  N  T    L  CA +AALE GK IHG  ++ G  +   V +
Sbjct: 376 EEALNMFVEIKQDGESL--NRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGN 433

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           AL+ MY +CG ++     F+ ++++DVVSWN++++ Y  HG+G +A+ +F+ M   GV P
Sbjct: 434 ALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKP 493

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
             I+ V VL ACSH GL++ G   F SM K++ + P+ +HY CM+DLLGRA +LEEA  +
Sbjct: 494 DEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDL 553

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
           I ++  +PG   WG+LLG+ RIH N EL E+A++ +F++EP N+G YVLL+++YAA+  W
Sbjct: 554 IRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRW 613

Query: 510 DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569
            +  +++  +   G+QKVPG S +EV+ K+++F   D  HP+ E+++A L  L  +M+E+
Sbjct: 614 VDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREE 673

Query: 570 GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
           GYV  TK+VL+D++ EEKE ++  HSEKLAVAFG++    G  IR+ KNLR+CEDCHS  
Sbjct: 674 GYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAI 733

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K ISK   + I++RD +RFHHF  G CSCGDYW
Sbjct: 734 KHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 161/384 (41%), Gaps = 36/384 (9%)

Query: 34  CCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHH 93
           C  +L+   T    SS + N +I    +      A ++    P     ++ ++L     +
Sbjct: 65  CDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRN 124

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
             L DA      L D   ++D      L++ Y+    VD+AR VFD    +    WN L 
Sbjct: 125 CRLGDA----RRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLL 180

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
            A    GR EE   L+          +SD   +  +   C+    GF   K   +     
Sbjct: 181 AAYVHNGRIEEACLLFES--------KSD---WDLISWNCLMG--GFVRKKKLGDARWLF 227

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
            +      +    T+I  YA+ G +  A  +F +   ++V +W+AM++ Y +NGM  EA 
Sbjct: 228 DKMPVRDAIS-WNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAK 286

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI----LPVVS 329
             F EM  E +++  N           A +A   Q K +   I R   +S+    +   +
Sbjct: 287 TFFDEMP-EKNEVSYN-----------AMIAGYVQTKKMD--IARELFESMPCRNISSWN 332

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
            ++T Y + G +   +  FD M +RD VSW ++I+ Y   G+  +A+ +F E+   G S 
Sbjct: 333 TMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL 392

Query: 390 SPISFVSVLGACSHAGLVEEGKML 413
           +  +F   L  C+    +E GK +
Sbjct: 393 NRATFGCALSTCADIAALELGKQI 416



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 25/263 (9%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +++ W+  I+ + RNG    AL +F  M   S      SV+  +++      +     + 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRS------SVSYNAMISGYLRNSKFNLARN 101

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +   +  R L S     + ++T Y R  +L   + +FD M ++DVVSWNSL+S Y  +GY
Sbjct: 102 LFDQMPERDLFSW----NVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGY 157

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             +A ++F  M       + IS+  +L A  H G +EE  +LFES     +I      + 
Sbjct: 158 VDEAREVFDNM----PEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI-----SWN 208

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           C++    R  KL +A  + + + +      W +++        +  A    +RLF+  PT
Sbjct: 209 CLMGGFVRKKKLGDARWLFDKMPVRDAIS-WNTMISGYAQGGGLSQA----RRLFDESPT 263

Query: 492 -NAGNYVLLADVYAAADMWDEVK 513
            +   +  +   Y    M DE K
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDEAK 286



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 103/212 (48%), Gaps = 23/212 (10%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +F  M  K+VVSW+++++ YA+NG   EA E+F  M  +      NS++   +L A    
Sbjct: 133 LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEK------NSISWNGLLAAYVHN 186

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
             +E+  +    +     D  L   + L+  + R  KL   + +FD M  RD +SWN++I
Sbjct: 187 GRIEEACL----LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMI 242

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           S Y   G   +A ++F E      SP+    ++ +++      G+++E K  F+ M +++
Sbjct: 243 SGYAQGGGLSQARRLFDE------SPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKN 296

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            +      Y  M+    +  K++ A ++ E +
Sbjct: 297 EV-----SYNAMIAGYVQTKKMDIARELFESM 323


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/616 (37%), Positives = 358/616 (58%), Gaps = 18/616 (2%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+  L   G   +AL    D  S     T+ TY  ++  C +   L  A  +HS +  
Sbjct: 227 NTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLK 286

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFD-KTRRRTIYVWNALFRALTLAGRGEEVLE 167
           +GF     ++T L++ Y+    +D A  VF   +  + +  W A+       G       
Sbjct: 287 HGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAA 346

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+ RM   G  +  +  TY+ +L    AS           +IHA V++  Y     + T 
Sbjct: 347 LFSRMREDG--VAPNDLTYSTILTVSEAS--------FPPQIHAQVIKTNYECTPTVGTA 396

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+  Y++      A  +F  +  K+VVSWSAM+ CYA+ G    A   F +M M  H L 
Sbjct: 397 LMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTM--HGLK 454

Query: 288 PNSVTMVSVLQACAALAA-LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
           PN  T+ S + ACA+ AA ++ G+  H   ++      L V SALV+MYAR G +E  QC
Sbjct: 455 PNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQC 514

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF+    RD++SWNS++S Y  HGY  KA+ +F++M   G+    ++F+SV+  C+HAGL
Sbjct: 515 VFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGL 574

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           VEEG+  F+ M +++ I P+++HYACMVDL  RA KL+E   +IE +    GP +W +LL
Sbjct: 575 VEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALL 634

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+CR+H NVEL + A+++L  LEP ++  YVLL+++Y+AA  W E   V++L++ + ++K
Sbjct: 635 GACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRK 694

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S I++K K++ F++ D+ HP  EQ++A L  ++A++K++GY P T  V +D+  ++
Sbjct: 695 EAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPHDVAEDQ 754

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE ++  HSE+LA+AFGLI T     + I KNLR+  D H+  K +S+  ++EI++RD  
Sbjct: 755 KEAMLAMHSERLALAFGLIATPPAAPLHIFKNLRVSGDGHTVMKMVSEIEDREIVMRDCC 814

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF++GVCSCGD+W
Sbjct: 815 RFHHFKSGVCSCGDFW 830



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 187/397 (47%), Gaps = 32/397 (8%)

Query: 69  LDVLS---------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
           LDV+S         + PNP   T+  +L        +    +VH+     G     F+  
Sbjct: 139 LDVMSLFFRMRAEGVWPNP--FTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCN 196

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
            L+N+Y+    V++AR VF +   R +  WN L   L L GR  E L+L+     + T +
Sbjct: 197 SLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITML 256

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKH---GKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
                TY+ V+  C         LKH    +++H+SVL+HG++   ++MT L+D Y + G
Sbjct: 257 TES--TYSTVINLCAN-------LKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAG 307

Query: 237 CVMYAGFVFSQMA-VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
            +  A  VF  M+  +NVVSW+AMI    +NG    A  LF    M    + PN +T  +
Sbjct: 308 QLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSR--MREDGVAPNDLTYST 365

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           +L    A    +    IH  +++   +    V +AL+  Y++    E    +F  +D++D
Sbjct: 366 ILTVSEASFPPQ----IHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKD 421

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC-SHAGLVEEGKMLF 414
           VVSW+++++ Y   G    A   F +M  HG+ P+  +  S + AC S A  V+ G+  F
Sbjct: 422 VVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQ-F 480

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
            ++  +H    ++   + +V +  R   +E A  + E
Sbjct: 481 HAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFE 517



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 150/287 (52%), Gaps = 21/287 (7%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           T L+++Y ++ SV D R VF+   +R +  W +L      AG   +V+ L+ RM     G
Sbjct: 95  TSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMR--AEG 152

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           +  + FT++ VL + VAS     ++  G+ +HA  ++ G    V +  +L++MYA+ G V
Sbjct: 153 VWPNPFTFSSVL-SMVASQ---GMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLV 208

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE------MIMESHDLCPNSVT 292
             A  VF +M  +++VSW+ ++A    NG   EAL+LF +      M+ ES        T
Sbjct: 209 EEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTES--------T 260

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
             +V+  CA L  L   + +H  +L+ G  S   V++AL+  Y + G+L+    VF  M 
Sbjct: 261 YSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMS 320

Query: 353 -KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
             ++VVSW ++I     +G    A  +F  M   GV+P+ +++ ++L
Sbjct: 321 GSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL 367



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 147/283 (51%), Gaps = 4/283 (1%)

Query: 206 GKEIHASVLRHGYN-GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           GK++HA  +R G++ G + + T+L+DMY  +  V+    VF  M  +NVV+W++++  Y 
Sbjct: 74  GKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYI 133

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           + G+  + + LF  M  E   + PN  T  SVL   A+   ++ G+ +H   ++ G  S 
Sbjct: 134 QAGVLLDVMSLFFRMRAEG--VWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCST 191

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + V ++L+ MYA+CG +E  + VF  M+ RD+VSWN+L++   ++G   +A+Q+F +   
Sbjct: 192 VFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRS 251

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
                +  ++ +V+  C++   +   + L  S+ K H           ++D   +A +L+
Sbjct: 252 SITMLTESTYSTVINLCANLKHLGLARQLHSSVLK-HGFHSYGNVMTALMDAYNKAGQLD 310

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           +A  +   +        W +++  C  + ++ LA     R+ E
Sbjct: 311 KALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMRE 353


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/658 (35%), Positives = 365/658 (55%), Gaps = 70/658 (10%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
           L ++S   +PTQ T+  +L SC    +L     VHS +   G      +   L+N+Y+  
Sbjct: 134 LRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKC 193

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM--------NGTGTG-- 178
                A+ VFD+ R +    WN +        + +  L L+ +M        N   TG  
Sbjct: 194 GDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYC 253

Query: 179 --------------------IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR--- 215
                               ++ D+FT   VL AC         LK GK+IHA ++R   
Sbjct: 254 HQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRES----LKLGKQIHAHIVRADV 309

Query: 216 -------------HGYNGIVHI-----------------MTTLIDMYARFGCVMYAGFVF 245
                        +  +G V +                  T+L+D Y + G +  A  +F
Sbjct: 310 DIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIF 369

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
             +  ++VV+W+AMI  YA+NG+  +AL LFR MI E     PN+ T+ +VL   ++LA+
Sbjct: 370 DSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPK--PNNYTLAAVLSVISSLAS 427

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM-DKRDVVSWNSLIS 364
           L+ GK +H   +R    S + V +AL+TMY+R G ++  + +F+H+   RD ++W S+I 
Sbjct: 428 LDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMIL 487

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
           S   HG G +AI++F++M+   + P  I++V VL AC+H GLVE+GK  F  M+  H I 
Sbjct: 488 SLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIE 547

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484
           P+  HYACM+DLLGRA  LEEA   I ++ IEP    WGSLL SCR+H  V+LA+ A+++
Sbjct: 548 PTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEK 607

Query: 485 LFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS 544
           L  ++P N+G Y+ LA+  +A   W++  +V++ ++ + ++K  G S +++K K++ F  
Sbjct: 608 LLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGV 667

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604
            D  HPQ + ++ ++  +  E+K+ G++P T  VL+DL+ E KE+I+  HSEKLA+AF L
Sbjct: 668 EDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFAL 727

Query: 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           INT K  T+RI KNLR+C DCHS  ++IS    +EI+VRD  RFHHF++G CSC DYW
Sbjct: 728 INTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 127/499 (25%), Positives = 213/499 (42%), Gaps = 104/499 (20%)

Query: 71  VLSIEPNPTQHTYEL--LLLSCTHHNSLSDALNVHSHLTDNGFDQ-DPFLVTKLINVYSH 127
           +L+  PNP  H+     LL S            +H+ +  +G      FL   L+N+Y  
Sbjct: 1   MLTPTPNPPSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVK 60

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR------------------------GE 163
             S  DA  +FD+   +T + WN +  A   AG                         G 
Sbjct: 61  TGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGY 120

Query: 164 EVLELYRR-----MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
             L L++      +    +GI   +FT+T VL +C A+      L  GK++H+ V++ G 
Sbjct: 121 NHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQA----LDVGKKVHSFVVKLGQ 176

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK--------------------------- 251
           +G+V +  +L++MYA+ G  + A  VF +M +K                           
Sbjct: 177 SGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQ 236

Query: 252 ----NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
               ++VSW+++I  Y   G    ALE F  M ++S  L P+  T+ SVL ACA   +L+
Sbjct: 237 MTDPDIVSWNSIITGYCHQGYDIRALETFSFM-LKSSSLKPDKFTLGSVLSACANRESLK 295

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL------------------------ 343
            GK IH +I+R  +D    V +AL++MYA+ G +E+                        
Sbjct: 296 LGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDG 355

Query: 344 ---------GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
                     + +FD +  RDVV+W ++I  Y  +G    A+ +F+ MI  G  P+  + 
Sbjct: 356 YFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTL 415

Query: 395 VSVLGACSHAGLVEEGKMLFE-SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            +VL   S    ++ GK L   ++R E +   SV +   ++ +  R+  +++A KI   +
Sbjct: 416 AAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGN--ALITMYSRSGSIKDARKIFNHI 473

Query: 454 RIEPGPKVWGSLLGSCRIH 472
                   W S++ S   H
Sbjct: 474 CSYRDTLTWTSMILSLAQH 492


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/614 (35%), Positives = 351/614 (57%), Gaps = 34/614 (5%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           N T+ T   +L   + +  +S    +H  +   GF+    + + L+ +Y++   + DA+ 
Sbjct: 136 NLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKK 195

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM----------------NGTG---- 176
           VF     R   ++N+L   L   G  E+ L+L+R M                NG      
Sbjct: 196 VFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAI 255

Query: 177 --------TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
                    G++ D++ +  VL AC     G   +  GK+IHA ++R  +   +++ + L
Sbjct: 256 ECFREMKVQGLKMDQYPFGSVLPAC----GGLGAINEGKQIHACIIRTNFQDHIYVGSAL 311

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY +  C+ YA  VF +M  KNVVSW+AM+  Y + G A EA+++F +M     D  P
Sbjct: 312 IDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGID--P 369

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +  T+   + ACA +++LE+G   HG  +  GL   + V ++LVT+Y +CG ++    +F
Sbjct: 370 DHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLF 429

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + M+ RD VSW +++S+Y   G   + IQ+F +M+ HG+ P  ++   V+ ACS AGLVE
Sbjct: 430 NEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVE 489

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           +G+  F+ M  E+ I PS+ HY+CM+DL  R+ +LEEA + I  +   P    W +LL +
Sbjct: 490 KGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSA 549

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CR   N+E+ + A++ L EL+P +   Y LL+ +YA+   WD V +++R +  + ++K P
Sbjct: 550 CRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEP 609

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G+S I+ K K++SF + DE  P  +Q++A L  L+ ++ + GY P T  V +D++   K 
Sbjct: 610 GQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKV 669

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           +++  HSE+LA+AFGLI    G+ IR+ KNLR+C DCH+ TK IS    +EILVRD  RF
Sbjct: 670 KMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRF 729

Query: 649 HHFRNGVCSCGDYW 662
           H F++G CSCGD+W
Sbjct: 730 HRFKDGTCSCGDFW 743



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 201/447 (44%), Gaps = 66/447 (14%)

Query: 47  LSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           L +RN++  ++ +   GN+ +AL      P P    Y  ++ +     S + A  V    
Sbjct: 16  LGARNQSRYVKMI--HGNIIRAL------PYPETFLYNNIVHAYALMKSSTYARRV---- 63

Query: 107 TDNGFDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
               FD+ P    F    L+  YS    + +    F+K   R    WN L    +L+G  
Sbjct: 64  ----FDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLV 119

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
              ++ Y  M    +   + R T   +LK  ++SS G   L  GK+IH  V++ G+   +
Sbjct: 120 GAAVKAYNTMMRDFSANLT-RVTLMTMLK--LSSSNGHVSL--GKQIHGQVIKLGFESYL 174

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNV----------------------------- 253
            + + L+ MYA  GC+  A  VF  +  +N                              
Sbjct: 175 LVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKD 234

Query: 254 -VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
            VSW+AMI   A+NG+A EA+E FREM ++   L  +     SVL AC  L A+ +GK I
Sbjct: 235 SVSWAAMIKGLAQNGLAKEAIECFREMKVQG--LKMDQYPFGSVLPACGGLGAINEGKQI 292

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           H  I+R      + V SAL+ MY +C  L   + VFD M +++VVSW +++  YG  G  
Sbjct: 293 HACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRA 352

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +A++IF +M   G+ P   +    + AC++   +EEG     S      I   + HY  
Sbjct: 353 EEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG-----SQFHGKAITSGLIHYVT 407

Query: 433 ----MVDLLGRANKLEEAAKIIEDLRI 455
               +V L G+   ++++ ++  ++ +
Sbjct: 408 VSNSLVTLYGKCGDIDDSTRLFNEMNV 434



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 162/319 (50%), Gaps = 18/319 (5%)

Query: 55  LIQSLCKQGNLRQALDV---LSIEP-NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I+ L + G  ++A++    + ++     Q+ +  +L +C    ++++   +H+ +    
Sbjct: 241 MIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTN 300

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           F    ++ + LI++Y     +  A+ VFD+ +++ +  W A+       GR EE ++++ 
Sbjct: 301 FQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFL 360

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M    +GI  D +T    + AC       S L+ G + H   +  G    V +  +L+ 
Sbjct: 361 DMQ--RSGIDPDHYTLGQAISACA----NVSSLEEGSQFHGKAITSGLIHYVTVSNSLVT 414

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           +Y + G +  +  +F++M V++ VSW+AM++ YA+ G A E ++LF +M+   H L P+ 
Sbjct: 415 LYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMV--QHGLKPDG 472

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALVTMYARCGKLELGQCV 347
           VT+  V+ AC+    +E+G+    + L      I+P +   S ++ +++R G+LE     
Sbjct: 473 VTLTGVISACSRAGLVEKGQRY--FKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRF 530

Query: 348 FDHMD-KRDVVSWNSLISS 365
            + M    D + W +L+S+
Sbjct: 531 INGMPFPPDAIGWTTLLSA 549



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 133/323 (41%), Gaps = 71/323 (21%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
             L+  Y++ G +      F ++  ++ V+W+ +I  Y+ +G+   A++ +  M+    D
Sbjct: 76  NNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM---RD 132

Query: 286 LCPN--SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
              N   VT++++L+  ++   +  GK IHG +++ G +S L V S L+ MYA  G +  
Sbjct: 133 FSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISD 192

Query: 344 GQCVFDHMDKR------------------------------DVVSWNSLISSYGVHGYGG 373
            + VF  +D R                              D VSW ++I     +G   
Sbjct: 193 AKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAK 252

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK-------------- 419
           +AI+ F+EM   G+      F SVL AC   G + EGK +   + +              
Sbjct: 253 EAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALI 312

Query: 420 ----------------EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR---IEPGPK 460
                           + M + +V  +  MV   G+  + EEA KI  D++   I+P   
Sbjct: 313 DMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHY 372

Query: 461 VWGSLLGSCRIHCNVELAERASK 483
             G  + +C    NV   E  S+
Sbjct: 373 TLGQAISAC---ANVSSLEEGSQ 392


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/592 (37%), Positives = 352/592 (59%), Gaps = 13/592 (2%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
           S E  PT   Y   + +C    +L DA  +H HL  + F+ D FL   LI++Y    SV 
Sbjct: 44  SGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVV 103

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG-IRSDRFTYTYVLK 191
           +A  VFDK R++ +  W +L           E + L   + G   G  + + FT+  +LK
Sbjct: 104 EAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGL---LPGMLKGRFKPNGFTFASLLK 160

Query: 192 ACVA-SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
           A  A +  G      G +IHA  ++  ++  V++ + L+DMYAR G +  A  VF ++  
Sbjct: 161 AAGAYADSGI-----GGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDS 215

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           KN VSW+A+I+ +AR G    AL +F EM  + +       T  S+    A + ALEQGK
Sbjct: 216 KNGVSWNALISGFARKGDGETALMVFAEM--QRNGFEATHFTYSSIFSGLAGIGALEQGK 273

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +H ++++        V + ++ MYA+ G +   + VF+ +  +D+V+WNS+++++  +G
Sbjct: 274 WVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYG 333

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
            G +A+  F+EM   G+  + I+F+ +L ACSH GLV+EGK  F+ M KE+ + P +EHY
Sbjct: 334 LGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHY 392

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
             +VDLLGRA  L  A   I  + +EP   VWG+LL +CR+H N ++ + A+  +F+L+P
Sbjct: 393 VTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDP 452

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
            ++G  VLL ++YA+   WD   RV+++++A G++K P  S +E+   ++ FV+ D+ HP
Sbjct: 453 DDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHP 512

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           + E+++ +   +S +++++GYVP    VL  +D +E+E  +  HSEK+A+AF LI    G
Sbjct: 513 RAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAG 572

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            TIRI KN+R+C DCHS  K+ISK   +EI+VRD NRFHHF NG CSCGDYW
Sbjct: 573 ATIRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 8/189 (4%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           ++S +L P      + + ACA    L+  + IHG++     +    + ++L+ +Y +CG 
Sbjct: 42  LDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGS 101

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL-- 398
           +     VFD M K+D+VSW SLI+ Y  +    +AI +   M+     P+  +F S+L  
Sbjct: 102 VVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161

Query: 399 -GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
            GA + +G+  +      ++  +      V   + ++D+  R  K++ A  + + L  + 
Sbjct: 162 AGAYADSGIGGQ----IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKN 217

Query: 458 GPKVWGSLL 466
           G   W +L+
Sbjct: 218 GVS-WNALI 225


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/597 (37%), Positives = 347/597 (58%), Gaps = 46/597 (7%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF-DKTRRRTIYVWNALFRALTLAG 160
           +H+ +  +G  QDP+ +TK ++          A  VF +   R   ++WN + R L+ + 
Sbjct: 30  IHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGLSCSD 89

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
           + +  L LY RM         + +T+ ++LKAC       S  +   +IHA + + GY  
Sbjct: 90  QPDRSLLLYHRM--LCCSAPHNAYTFPFLLKAC----SNLSAFQETTQIHAHITKFGYGH 143

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQ-----------------------MAV------- 250
            ++ + +LI+ YA  G   +A  +F +                       MA+       
Sbjct: 144 DIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMP 203

Query: 251 --KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
              N +SW+ MI+ Y + GM  EAL+LF EM  ++ ++ P++V++ S L AC+ L ALEQ
Sbjct: 204 EKNNAISWTTMISGYVQAGMNKEALQLFHEM--QNSNVPPDNVSLASALSACSQLGALEQ 261

Query: 309 GKMIHGYI--LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
           GK IH Y    R  +DS+L  V  L+ MYA+CG++E    VF +M  + V  W +LIS Y
Sbjct: 262 GKWIHSYANKTRTRIDSVLCCV--LIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGY 319

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
             HG G +AI  F EM   GV P+ I+F +VL ACS+ GLVEEGK +F ++ +++ ++P+
Sbjct: 320 AYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPT 379

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF 486
           +EHY CMVDLLGRA  L EA + I+ + ++P   +WGSLL +C+IH N+EL E+  + L 
Sbjct: 380 IEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILI 439

Query: 487 ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD 546
           E++  + G YV +A+++A    WD+    +RL+  +G+ KVPG S I ++   + F++ D
Sbjct: 440 EMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGD 499

Query: 547 EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL-DAEEKERIVLGHSEKLAVAFGLI 605
             H + +++      +  +++E GYVP+ + +L DL D EEKE IV  HSEKLA+ +GL+
Sbjct: 500 RSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLM 559

Query: 606 NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            T  G TIRI KNLR+C+DCH     ISK   ++I++RD  RFHHF++G CSCGDYW
Sbjct: 560 KTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 149/335 (44%), Gaps = 37/335 (11%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           +T+  LL +C++ ++  +   +H+H+T  G+  D + V  LIN Y+   +   A  +FD+
Sbjct: 111 YTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDR 170

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV----------- 189
            +      WN++ +    AG  +  L L+R+M      I        YV           
Sbjct: 171 IQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQL 230

Query: 190 ---------------LKACVASSCGFSLLKHGKEIH--ASVLRHGYNGIVHIMTTLIDMY 232
                          L + +++      L+ GK IH  A+  R   + +  +   LIDMY
Sbjct: 231 FHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSV--LCCVLIDMY 288

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           A+ G +  A  VF  M  K+V  W+A+I+ YA +G+  EA+  F E  M++  + PN++T
Sbjct: 289 AKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLE--MQNMGVKPNAIT 346

Query: 293 MVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
             +VL AC+    +E+GK +   I R   L   +     +V +  R G L         M
Sbjct: 347 FTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKM 406

Query: 352 D-KRDVVSWNSLISSYGVHG---YGGKAIQIFKEM 382
             K + V W SL+ +  +H     G K  +I  EM
Sbjct: 407 PLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEM 441


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/601 (35%), Positives = 353/601 (58%), Gaps = 39/601 (6%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS--VDDARHVFDKTRRRTIYVWNAL 152
           +  +   +H+ L  +G  +D  LV   +   +  D   +D A  + D++ + T++  N++
Sbjct: 18  TFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSM 77

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
            RA   +   E+  + YRR+  +G  ++ D +T  ++++AC     G  + + G ++H  
Sbjct: 78  IRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACT----GLRMRETGLQVHGM 133

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGC-------------------------------VMYA 241
            +R G++   H+ T LI +YA  GC                               V++A
Sbjct: 134 TIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFA 193

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
             +F  M  ++ ++W+AMI+ YA+ G + EAL +F  M +E   +  N V M+SVL AC 
Sbjct: 194 RKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKV--NGVAMISVLSACT 251

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            L AL+QG+  H YI R  +   + + + LV +YA+CG +E    VF  M++++V +W+S
Sbjct: 252 QLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSS 311

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
            ++   ++G+G K +++F  M   GV+P+ ++FVSVL  CS  G V+EG+  F+SMR E 
Sbjct: 312 ALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEF 371

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
            I P +EHY C+VDL  RA +LE+A  II+ + ++P   VW SLL + R++ N+EL   A
Sbjct: 372 GIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLA 431

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS 541
           SK++ ELE  N G YVLL+++YA ++ WD V  V++ ++++G++K PG S +EV  +++ 
Sbjct: 432 SKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHE 491

Query: 542 FVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVA 601
           F   D+ HP++ Q+ A+  ++S  ++  GY   T  V++D+D EEKE  +  HSEK A+A
Sbjct: 492 FFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIA 551

Query: 602 FGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
           FG+++  +   IRI KNLR+C DCH  +  ISK  N+EI+VRD NRFHHF++G CSC  +
Sbjct: 552 FGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGF 611

Query: 662 W 662
           W
Sbjct: 612 W 612



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 158/366 (43%), Gaps = 52/366 (14%)

Query: 38  LNSSTTPTSLSSRNKNELIQSLCKQGNLRQALD----VLSI--EPNPTQHTYELLLLSCT 91
           L+ S  PT  +    N +I++ CK     ++ D    +LS   +  P  +T   L+ +CT
Sbjct: 63  LDRSEKPTLFAL---NSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACT 119

Query: 92  HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD------------------ 133
                   L VH      GFD DP + T LI++Y+    +D                   
Sbjct: 120 GLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTA 179

Query: 134 -------------ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
                        AR +F+    R    WNA+       G   E L ++  M     G++
Sbjct: 180 MVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQ--LEGVK 237

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            +      VL AC         L  G+  H+ + R+     V + TTL+D+YA+ G +  
Sbjct: 238 VNGVAMISVLSACTQ----LGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEK 293

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF  M  KNV +WS+ +   A NG   + LELF   +M+   + PN+VT VSVL+ C
Sbjct: 294 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFS--LMKQDGVTPNAVTFVSVLRGC 351

Query: 301 AALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVV 357
           + +  +++G+  H   +R   G++  L     LV +YAR G+LE    +   M  K    
Sbjct: 352 SVVGFVDEGQR-HFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAA 410

Query: 358 SWNSLI 363
            W+SL+
Sbjct: 411 VWSSLL 416


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/633 (36%), Positives = 352/633 (55%), Gaps = 35/633 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N L+    + G + +A +V    P     ++  LL +  H+  + +A      L ++  D
Sbjct: 146 NSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEA----CLLFESKSD 201

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            D      L+  +     + DAR +FDK   R    WN +       G   +   L+   
Sbjct: 202 WDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE- 260

Query: 173 NGTGTGIRSDRFTYTYVLKACVA------SSCGFSLLKHGKEIHASVLRHGYNGI----- 221
                    D FT+T ++   V       +   F  +    E+  + +  GY        
Sbjct: 261 -----SPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDI 315

Query: 222 ------------VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
                       +    T+I  Y + G +  A   F  M  ++ VSW+A+IA YA++G  
Sbjct: 316 ARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHY 375

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EAL +F E+  +   L  N  T    L  CA +AALE GK IHG  ++ G  +   V +
Sbjct: 376 EEALNMFVEIKQDGESL--NRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGN 433

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           AL+ MY +CG ++     F+ ++++DVVSWN++++ Y  HG+G +A+ +F+ M   GV P
Sbjct: 434 ALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKP 493

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
             I+ V VL ACSH GL++ G   F SM K++ + P+ +HY CM+DLLGRA +LEEA  +
Sbjct: 494 DEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDL 553

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
           I ++  +PG   WG+LLG+ RIH N EL E+A++ +F++EP N+G YVLL+++YAA+  W
Sbjct: 554 IRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRW 613

Query: 510 DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569
            +  +++  +   G+QKVPG S +EV+ K+++F   D  HP+ E+++A L  L  +M+E+
Sbjct: 614 VDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREE 673

Query: 570 GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
           GYV  TK+VL+D++ EEKE ++  HSEKLAVAFG++    G  IR+ KNLR+CEDCHS  
Sbjct: 674 GYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAI 733

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K ISK   + I++RD +RFHHF  G CSCGDYW
Sbjct: 734 KHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 57/261 (21%)

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
           + GL++ G   F  M +E+ + P+ +HY CM+DLLGR ++LEE                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
           G+LLG+ RIH N EL E+A++  F++ P N+G                 + +++ +    
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------------ISKMRDV---- 857

Query: 523 GLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
           G+QKVPG S  EV+ K+++F SV  F             LS E +  G++ +  + + + 
Sbjct: 858 GVQKVPGYSWFEVQNKIHTF-SVGLF-------------LSRERENIGFLEELDLKMRER 903

Query: 583 DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKN-LRLCEDCHSFTKFISKFANKEIL 641
           + E++  +    SE LA A G++    G   R+ K  + +CEDC S  K +SK   + I 
Sbjct: 904 EEEKERTLKY-LSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLIT 962

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           +RD    H F   +CSCG+YW
Sbjct: 963 LRDS---HRFNESICSCGEYW 980



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 161/384 (41%), Gaps = 36/384 (9%)

Query: 34  CCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHH 93
           C  +L+   T    SS + N +I    +      A ++    P     ++ ++L     +
Sbjct: 65  CDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRN 124

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
             L DA      L D   ++D      L++ Y+    VD+AR VFD    +    WN L 
Sbjct: 125 CRLGDA----RRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLL 180

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
            A    GR EE   L+          +SD   +  +   C+    GF   K   +     
Sbjct: 181 AAYVHNGRIEEACLLFES--------KSD---WDLISWNCLMG--GFVRKKKLGDARWLF 227

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
            +      +    T+I  YA+ G +  A  +F +   ++V +W+AM++ Y +NGM  EA 
Sbjct: 228 DKMPVRDAIS-WNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAK 286

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI----LPVVS 329
             F EM  E +++  N           A +A   Q K +   I R   +S+    +   +
Sbjct: 287 TFFDEMP-EKNEVSYN-----------AMIAGYVQTKKMD--IARELFESMPCRNISSWN 332

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
            ++T Y + G +   +  FD M +RD VSW ++I+ Y   G+  +A+ +F E+   G S 
Sbjct: 333 TMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL 392

Query: 390 SPISFVSVLGACSHAGLVEEGKML 413
           +  +F   L  C+    +E GK +
Sbjct: 393 NRATFGCALSTCADIAALELGKQI 416



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 25/263 (9%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +++ W+  I+ + RNG    AL +F  M   S      SV+  +++      +     + 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRS------SVSYNAMISGYLRNSKFNLARN 101

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +   +  R L S     + ++T Y R  +L   + +FD M ++DVVSWNSL+S Y  +GY
Sbjct: 102 LFDQMPERDLFSW----NVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGY 157

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             +A ++F  M       + IS+  +L A  H G +EE  +LFES     +I      + 
Sbjct: 158 VDEAREVFDNM----PEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI-----SWN 208

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           C++    R  KL +A  + + + +      W +++        +  A    +RLF+  PT
Sbjct: 209 CLMGGFVRKKKLGDARWLFDKMPVRDAIS-WNTMISGYAQGGGLSQA----RRLFDESPT 263

Query: 492 -NAGNYVLLADVYAAADMWDEVK 513
            +   +  +   Y    M DE K
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDEAK 286



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 103/212 (48%), Gaps = 23/212 (10%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +F  M  K+VVSW+++++ YA+NG   EA E+F  M  +      NS++   +L A    
Sbjct: 133 LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEK------NSISWNGLLAAYVHN 186

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
             +E+  +    +     D  L   + L+  + R  KL   + +FD M  RD +SWN++I
Sbjct: 187 GRIEEACL----LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMI 242

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           S Y   G   +A ++F E      SP+    ++ +++      G+++E K  F+ M +++
Sbjct: 243 SGYAQGGGLSQARRLFDE------SPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKN 296

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            +      Y  M+    +  K++ A ++ E +
Sbjct: 297 EV-----SYNAMIAGYVQTKKMDIARELFESM 323


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/607 (35%), Positives = 347/607 (57%), Gaps = 10/607 (1%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           I  L K   +   +    I PN  Q TY  +L +CT    +     +HS    NGF+ D 
Sbjct: 324 ISDLAKSFEIFGQMQATGIHPN--QFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDM 381

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           ++   LI++YS +  +D AR + +   +R +  W ++          EE L  ++ M   
Sbjct: 382 YVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDC 441

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
           G  +  D         AC     G   ++ G +IHA V   GY   + I  TL+++YAR 
Sbjct: 442 G--VWPDNIGLASAASACA----GIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARC 495

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G    A  +F ++  K+ ++W+ +I+ + ++ +  +AL +F +M         N  T +S
Sbjct: 496 GRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKY--NVFTFIS 553

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
            + A A LA ++QGK +HG  ++ G  S   V +AL+++Y +CG +E  + +F  M  R+
Sbjct: 554 AISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRN 613

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
            VSWN++I+S   HG G +A+ +F +M   G+ P+ ++F+ VL ACSH GLVEEG   F+
Sbjct: 614 EVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFK 673

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
           SM   + + P  +HYAC+VD+LGRA +L+ A + ++++ I     +W +LL +C++H N+
Sbjct: 674 SMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNI 733

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           E+ E A+K L ELEP ++ +YVLL++ YA    W    +V+++++ RG++K PGRS IEV
Sbjct: 734 EIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEV 793

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
           K  +++F   D  HP  +Q++  L  L+  + + GY  +   + ++ + E+K+     HS
Sbjct: 794 KNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHS 853

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EKLAVAFGL+       +R+ KNLR+C+DCHS+ K  S+   +EI++RDV RFHHF +G 
Sbjct: 854 EKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGS 913

Query: 656 CSCGDYW 662
           CSCGDYW
Sbjct: 914 CSCGDYW 920



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 201/442 (45%), Gaps = 31/442 (7%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDA-------------------LNVHSHLTDNGFDQD 114
           I P+  +    L+    +HH +L  A                   L +H+     G   D
Sbjct: 18  IVPDNPEKILSLVAAKASHHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGAD 77

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             +   LI++Y+    V  AR VF +   R    W A+      +G G+E   LY +M+ 
Sbjct: 78  RLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHW 137

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
           T            YVL + +++     L   G+ IHA V +  +     +   LI +Y  
Sbjct: 138 TAV------IPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLG 191

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
           FG    A  VF  M   + V+++ +I+ +A+ G    AL++F EM +    L P+ VT+ 
Sbjct: 192 FGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSG--LRPDCVTVA 249

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           S+L ACA++  L++GK +H Y+L+ G+        +L+ +Y +CG +E    +F+  D+ 
Sbjct: 250 SLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRT 309

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           +VV WN ++ +YG      K+ +IF +M   G+ P+  ++  +L  C+  G +E G+ + 
Sbjct: 310 NVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQI- 368

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH-- 472
            S+  ++     +     ++D+  +   L++A KI+E L  +     W S++     H  
Sbjct: 369 HSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLE-KRDVVSWTSMIAGYVQHDF 427

Query: 473 CNVELAERASKRLFELEPTNAG 494
           C   LA     +   + P N G
Sbjct: 428 CEEALATFKEMQDCGVWPDNIG 449


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/637 (37%), Positives = 353/637 (55%), Gaps = 70/637 (10%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           TY +++ S  +H  +S A     H  D   ++D      ++  Y     V++AR +F+  
Sbjct: 8   TYNVMISSHANHGLVSLA----RHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 63

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNG----------TGTGIRSDR-------- 183
               +  WNAL       G+  E  EL+ RM G          +G   R D         
Sbjct: 64  TEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD 123

Query: 184 -------FTYTYVL---------------------------KACVASSCGFSLLKHGKEI 209
                  FT+T V+                            A VA+     ++   KE+
Sbjct: 124 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL 183

Query: 210 HASVLRHGYNGI----VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
                   +N +    V    T++  YA+ G +  A  VF  M  K+ VSW+AM+A Y++
Sbjct: 184 --------FNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQ 235

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G + E L+LF EM      +  N      VL  CA +AALE G  +HG ++R G     
Sbjct: 236 GGCSEETLQLFIEMGRCGEWV--NRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGC 293

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +AL+ MY +CG +E  +  F+ M++RDVVSWN++I+ Y  HG+G +A++IF  M   
Sbjct: 294 FVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTT 353

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
              P  I+ V VL ACSH+GLVE+G   F SM  +  +    EHY CM+DLLGRA +L E
Sbjct: 354 STKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAE 413

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A  +++D+  EP   +WG+LLG+ RIH N EL   A++++FELEP NAG YVLL+++YA+
Sbjct: 414 AHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYAS 473

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
           +  W + ++++ ++E RG++KVPG S IEV+ K+++F + D  HP+ E+++A L +L   
Sbjct: 474 SGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMR 533

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           MK+ GYV  T +VL+D++ EEKE ++  HSEKLAVA+G++N   G  IR+ KNLR+C DC
Sbjct: 534 MKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDC 593

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H+  K+IS    + IL+RD NRFHHFR G CSCGDYW
Sbjct: 594 HNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/564 (39%), Positives = 347/564 (61%), Gaps = 8/564 (1%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +H +   +G   +  + T +I++Y     +DDAR  F++ + +    WNA+     L GR
Sbjct: 53  IHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGR 112

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG--YN 219
             E LEL+R M       R D+F+++  ++AC         L+ G+EIH  + R G   +
Sbjct: 113 DREALELFREMCERSRSARPDKFSFSIAIEAC----SNLEDLEQGREIHEMLRREGKELH 168

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMA-VKNVVSWSAMIACYARNGMAFEALELFRE 278
             V + T L++MY++ G +  A  VF  +    + V W+AMIA YA++G   +AL+L+R 
Sbjct: 169 KDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRS 228

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M  ++ DL P   T V+V+  CA L+AL+QG+ IH  +     D+ L V +ALV MY +C
Sbjct: 229 M-HDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKC 287

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G L+    VF  M  +D +SWN++ISSY  HG+  +A+ +++EM   GV P+ ++FV +L
Sbjct: 288 GCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLL 347

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSH GLV +G   F  M+ +H I+PSV H+ C++DLLGR  +L EA  +++ + I+  
Sbjct: 348 SACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQAN 407

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
              W SLLG+C+ H +++   RA+ ++ +  P  +G YVLL+++YAAA  W +V++++++
Sbjct: 408 AVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKI 467

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
           + ARG++K PG+S IE+   ++ FVS D  HPQ E+++  L  +  EMK  GYVP T  V
Sbjct: 468 MAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSV 527

Query: 579 LYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANK 638
            +DL+ EEKE +++ HSEKLA+ +G +       +RI KNLR+C DCH+ TKF+S+   +
Sbjct: 528 FHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGR 587

Query: 639 EILVRDVNRFHHFRNGVCSCGDYW 662
           +I+VRD  RFH F NG CSC DYW
Sbjct: 588 KIVVRDAARFHLFENGSCSCRDYW 611



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 130/253 (51%), Gaps = 11/253 (4%)

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL--QACAALAALEQGKMIHGYIL 317
           +A ++ NG   EAL  FR M        P+ VT   +L   A    AA++QG+ IH Y  
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGER--PDRVTFSVILAAIAQMGAAAIDQGREIHRYAR 58

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
             GL   + V +A+++MY +CG+L+  +  F+ +  ++ V+WN+++++Y + G   +A++
Sbjct: 59  ISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALE 118

Query: 378 IFKEMIYHGVS--PSPISFVSVLGACSHAGLVEEGKMLFESMRKE-HMIRPSVEHYACMV 434
           +F+EM     S  P   SF   + ACS+   +E+G+ + E +R+E   +   V     ++
Sbjct: 119 LFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALL 178

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA---ERASKRLFELEPT 491
           ++  +   LEEA K+ + +R +     W +++ +   H   + A    R+     +L P 
Sbjct: 179 NMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPK 238

Query: 492 NAGNYVLLADVYA 504
             G +V + DV A
Sbjct: 239 Q-GTFVTVIDVCA 250


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/586 (36%), Positives = 343/586 (58%), Gaps = 9/586 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T+  LL  C           +H  +       D ++ T L+N+Y+    +  AR +
Sbjct: 77  PDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFL 136

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++   R   VW ++           E L LY++M         D F+   V  A + S+
Sbjct: 137 FERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKM-------EEDGFSPDEVTMATLVSA 189

Query: 198 CG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           C     L  G ++H+ +          + + L++MYA+ G +  A  VF +++ K+V +W
Sbjct: 190 CAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAW 249

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           SA+I  Y +N  + EAL+LFRE +    ++ PN VT+++V+ ACA L  LE G+ +H YI
Sbjct: 250 SALIFGYVKNNRSTEALQLFRE-VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYI 308

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            R      + + ++L+ M+++CG ++  + +FD M  +D++SWNS+++ + +HG G +A+
Sbjct: 309 TRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREAL 368

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
             F+ M    + P  I+F+ VL ACSHAGLV+EGK LF  +   + +R   EHY CMVDL
Sbjct: 369 AQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDL 428

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           L RA  L EA + I  + ++P   +WGS+LG+CR++ N+EL E A++ L +LEPTN G Y
Sbjct: 429 LCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVY 488

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           +LL+++YA   MW+EVK+V+ L+  +G+QK PG S + +    +SF++ D  HP+  ++ 
Sbjct: 489 ILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEIS 548

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
            +L  +  ++K  GYV  T  VL ++D  +KE  V  HSEKLA+ +GL+ +  G  I I 
Sbjct: 549 IMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVIL 608

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+  K +SK   ++I +RD NRFHHF++G CSC DYW
Sbjct: 609 KNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 123/229 (53%), Gaps = 3/229 (1%)

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           V YA  VF+     +V++W++M+  +  + M   AL+ + EM+  S ++ P+  T  S+L
Sbjct: 28  VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNV-PDRFTFPSLL 86

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           + CA L   + GK++HG +++  L S L + + L+ MYA CG L+  + +F+ M  R+ V
Sbjct: 87  KGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKV 146

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
            W S+IS Y  +    +A+ ++K+M   G SP  ++  +++ AC+    +  G  L   +
Sbjct: 147 VWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI 206

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           R+  M   +V   A +V++  +   L+ A ++ + L  +     W +L+
Sbjct: 207 REMDMKICAVLGSA-LVNMYAKCGDLKTARQVFDKLS-DKDVYAWSALI 253


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/588 (38%), Positives = 347/588 (59%), Gaps = 21/588 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P++ ++ L+L SC            H  +   GF+ D  L T L++ Y+    +  A+ V
Sbjct: 8   PSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRV 67

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F    RR +   NA+  AL+  G  EE   L+  M        ++R + ++   + +   
Sbjct: 68  FMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM--------TERNSCSW--NSMITCY 117

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMT--TLIDMYARFGCVMYAGFVFSQM-AVKNVV 254
           C         +I+++ L    N +  +++   +ID Y +   ++ A  +F  M + +N V
Sbjct: 118 CKLG------DINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSV 171

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           +W+ MI+ Y + G    A+ +F++M  +S ++ P  VTMVS+L ACA L AL+ G+ IHG
Sbjct: 172 TWNTMISAYVQCGEFGTAISMFQQM--QSENVKPTEVTMVSLLSACAHLGALDMGEWIHG 229

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
           YI  + L   + + +AL+ MY +CG LE    VF  + ++++  WNS+I   G++G G +
Sbjct: 230 YIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEE 289

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           AI  F  M   G+ P  ++FV +L  CSH+GL+  G+  F  M   + + P VEHY CMV
Sbjct: 290 AIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMV 349

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           DLLGRA  L+EA ++I  + ++P   V GSLL +C+IH + +L E+ +++L EL+P + G
Sbjct: 350 DLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGG 409

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
           NYV L+++YA+   WD+V   ++L+  RG+ K PG S IEV   ++ FV+ D  HPQF Q
Sbjct: 410 NYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQ 469

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
           ++A L  ++ E+K +G+VP T  VL+D++ EEKE  +  HSE++AVAFGL++T  G+TIR
Sbjct: 470 INAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIR 529

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + KNLR C DCHS  K IS    +EI+VRD  RFHHFRNG CSC DYW
Sbjct: 530 VVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           M  +D+ P+  +   +L++CA     + G+  H  I++ G +  + + + L+  YA+ G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L+  + VF  M +RDVV+ N++IS+   HGY  +A  +F  M       +  S+ S++  
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM----TERNSCSWNSMITC 116

Query: 401 CSHAGLVEEGKMLFE 415
               G +   +++F+
Sbjct: 117 YCKLGDINSARLMFD 131


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/605 (36%), Positives = 356/605 (58%), Gaps = 15/605 (2%)

Query: 64  NLRQALDVLSIEP-NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLI 122
           +LR A+ +L     +P+       L  C    ++++   +H H+   GF    +L   L+
Sbjct: 40  DLRDAVQLLEDRSVSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLV 99

Query: 123 NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSD 182
            +Y    S+  A+ VF  T RR ++ W  +  A    G   + L L   M+  G  I  +
Sbjct: 100 EMYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEG--ISPN 157

Query: 183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG 242
             T+  +L A  A     S L  G+ +H  +   G+   + +   LI+MYA+   +  A 
Sbjct: 158 SITFIELLGAVAA----LSWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADAC 213

Query: 243 FVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA 302
            VF  +  ++V++W+A++A YA NG   +AL++F  M ++  +  P  VT V+V+  CA 
Sbjct: 214 SVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVE--PTEVTFVTVVDVCAD 271

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           +A    G+ +HG I  R  ++ + V +AL+ MY +C   +  + VFD M ++D+++WNS+
Sbjct: 272 IAVFGIGREVHGVIDARS-EANVCVGNALINMYGKCASPDEARKVFDAMQRKDIITWNSM 330

Query: 363 ISSYGVHGYGGKAIQIFKEM-----IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           I+ YG +GYG +A++I+K M        G++   I+F+ VL ACSHAGLV++   L+ SM
Sbjct: 331 IAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFACSHAGLVKDSCKLYSSM 390

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
             ++  +P+     C++DLLGRA  L+EA + I  +   P   +W  LLG+C  H +VE 
Sbjct: 391 IGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPDHTIWTILLGACITHADVER 450

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
           A RA+ R+  L PT++G+YV L+++YA A+ WD++ R+++L++ RG+ K+ G+S IE+  
Sbjct: 451 AARAADRIMALRPTDSGSYVALSNLYALAERWDDMARMRKLMDQRGVFKMAGKSSIEIGG 510

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
            ++ F++ D  HP+  +++  L  +   ++E+GYVP  K VL++   E KE++   HSE+
Sbjct: 511 VLHEFIAGDTSHPRKREIYEELRRIEGVIRERGYVPDIKAVLHNAAREAKEKMCCFHSER 570

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AFG+I++  G  +RI KNLR+C DCHS TK ISKF+ ++I+VRD NRFH FRNG CS
Sbjct: 571 LAIAFGMISSPGGTELRIMKNLRVCPDCHSATKIISKFSGRKIIVRDANRFHEFRNGSCS 630

Query: 658 CGDYW 662
           C DYW
Sbjct: 631 CEDYW 635


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/585 (38%), Positives = 343/585 (58%), Gaps = 42/585 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +TY  +L + +  +SL   L +H  +   G D + ++   LI +Y    S+ +A+ V
Sbjct: 118 PDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQV 177

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
            D+   R +  WN++       GR  + LEL R M      ++ +  T   +L A     
Sbjct: 178 LDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALN--LKPNDCTMASLLPA----- 230

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                                     +  T  D       V+Y   +F ++  K+V+SW+
Sbjct: 231 --------------------------VTNTTSDN------VLYVKEMFLKLTKKSVISWN 258

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            MIA Y  N M  EA+ L+ +M  E++ + P+ V++VSVL A   L+AL  G+ +H +  
Sbjct: 259 VMIAMYVNNSMPKEAVVLYSQM--EANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAE 316

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R+ L   L + +AL+ MYA+CG L   + VF+ M  RDVVSW S+IS+YG  G G  A+ 
Sbjct: 317 RKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVA 376

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F EM   G++P  I+FVSVL ACSHAGL+++G+  F  M  E  I P +EH+AC+VDLL
Sbjct: 377 VFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLM-AECGITPKLEHFACVVDLL 435

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA K++EA   I  + +EP  +VWG LL +CR++ N+ +   A+ +L  L P ++G YV
Sbjct: 436 GRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYV 495

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++YA A  W +V  ++ ++E +G++K+PG S +E+   +++F++ D  HPQ ++++ 
Sbjct: 496 LLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYE 555

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  L  +MKE GY+P+T   L+D++ E+KE  +  HSEKLAVAF +INT  G  IR+TK
Sbjct: 556 ELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTK 615

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH   K ISK A +EI++RD +RFHHF+ G CSCGDYW
Sbjct: 616 NLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 165/349 (47%), Gaps = 42/349 (12%)

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
           L D     +P +  KL+ VY+       ARH+FD+   + +  +N + R+       ++ 
Sbjct: 45  LNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDA 104

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L +Y+ M     G   D +TY  VLKA   S      L  G +IH +VL+ G +  +++ 
Sbjct: 105 LLVYKTM--YTQGFVPDMYTYPCVLKASSRSDS----LWVGLQIHGAVLKIGLDLNLYVG 158

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
             LI MY +   +  A  V  ++  ++VVSW++M++ YA+NG   +ALEL RE  ME+ +
Sbjct: 159 NGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCRE--MEALN 216

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           L PN  TM S+L A     +                D++L V                 +
Sbjct: 217 LKPNDCTMASLLPAVTNTTS----------------DNVLYV-----------------K 243

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +F  + K+ V+SWN +I+ Y  +    +A+ ++ +M  +GV P  +S VSVL A     
Sbjct: 244 EMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLS 303

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
            +  G+ + +   ++ ++ P++     ++D+  +   L +A  +   ++
Sbjct: 304 ALSLGRRVHKFAERKKLL-PNLLLENALIDMYAKCGCLRDARAVFNQMQ 351



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 107/199 (53%), Gaps = 6/199 (3%)

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           HGK ++   LR  +N  V I   L+ +YA  G    A  +F ++  KNVV ++ MI  Y 
Sbjct: 41  HGKVLNDQYLR--WNPSVGI--KLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYV 96

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
            N +  +AL +++ M  +     P+  T   VL+A +   +L  G  IHG +L+ GLD  
Sbjct: 97  NNHLYKDALLVYKTMYTQG--FVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLN 154

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           L V + L+ MY +C  L+  Q V D +  RDVVSWNS++S Y  +G    A+++ +EM  
Sbjct: 155 LYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEA 214

Query: 385 HGVSPSPISFVSVLGACSH 403
             + P+  +  S+L A ++
Sbjct: 215 LNLKPNDCTMASLLPAVTN 233



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 143/320 (44%), Gaps = 11/320 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N LI    K  +L++A  VL   P     ++  ++     +   +DAL +   +      
Sbjct: 159 NGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLK 218

Query: 113 QDPFLVTKLINVYSHF--DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
            +   +  L+   ++   D+V   + +F K  ++++  WN +          +E + LY 
Sbjct: 219 PNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYS 278

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           +M   G  +  D  +   VL A        S L  G+ +H    R      + +   LID
Sbjct: 279 QMEANG--VEPDVVSIVSVLPA----YGDLSALSLGRRVHKFAERKKLLPNLLLENALID 332

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MYA+ GC+  A  VF+QM  ++VVSW+++I+ Y + G   +A+ +F E  M +  L P+S
Sbjct: 333 MYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAE--MRNSGLNPDS 390

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           +  VSVL AC+    L+ G+     +   G+   L   + +V +  R GK++        
Sbjct: 391 IAFVSVLAACSHAGLLDDGRYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQ 450

Query: 351 MD-KRDVVSWNSLISSYGVH 369
           M  + D   W  L+S+  V+
Sbjct: 451 MPLEPDERVWGPLLSACRVY 470



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 310 KMIHGYILRRGLDSILPVVS-ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           K +HG +L        P V   L+ +YA CG+  L + +FD +  ++VV +N +I SY  
Sbjct: 38  KKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVN 97

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           +     A+ ++K M   G  P   ++  VL A S +  +  G  +  ++ K   I   + 
Sbjct: 98  NHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLK---IGLDLN 154

Query: 429 HYA--CMVDLLGRANKLEEAAKIIEDL 453
            Y    ++ + G+   L+EA ++++++
Sbjct: 155 LYVGNGLIAMYGKCKSLKEAQQVLDEI 181


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/689 (34%), Positives = 384/689 (55%), Gaps = 39/689 (5%)

Query: 3   ALQSPQTPQLLRSPYH-----TNSIAHLPPKPSSVCC-----CVSLNSSTTPTSLSSRNK 52
           AL S   P+ LR          +S   + PK S+        C SL+ +    +   R +
Sbjct: 64  ALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTR 123

Query: 53  NELIQSLCK-----QGNLRQALD----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVH 103
           N +  S+        GN+ +AL     +L +    T+     +L +C+    + D   +H
Sbjct: 124 NVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIH 183

Query: 104 SHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR--RTIYVWNALFRALTLAGR 161
           S +  +GF+ +  +   ++ +Y    +V++AR VFD      R +  WN +        R
Sbjct: 184 SCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDR 243

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV-ASSCGFSLLKHGKEIHASVLRHGYNG 220
           G++ ++LY+RM      +R D+ TY  +L AC  A   G      G+ +H  ++      
Sbjct: 244 GKDAIQLYQRMQ-----LRPDKVTYVSLLSACSSAEDVGL-----GRVLHKQIVNDELEK 293

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            V +   L+ MYA+ G    A  VF +M  ++++SW+ +I+ Y R  +  EA  LF++M+
Sbjct: 294 NVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQML 353

Query: 281 M-----ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
                  S  + P+++  V++L ACA ++ALEQGKM+       GL S   V +A+V +Y
Sbjct: 354 ELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLY 413

Query: 336 ARCGKLELGQCVFDHMDKR-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
            +CG++E  + +FD +  R DV  WN++I+ Y   G   +A+++F  M   GV P   SF
Sbjct: 414 GKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSF 473

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHM-IRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           VS+L ACSH GL ++GK  F SM  E+  +  +++H+ C+ DLLGR  +L+EA + +E L
Sbjct: 474 VSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKL 533

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
            ++P    W SLL +CR H +++ A+  + +L  LEP  A  YV L+++YA    W  V 
Sbjct: 534 PVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVA 593

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
           +V++ +  +G++K  G S IE+ + M+ F + D+ HP+  ++   L  L ++MKE GYVP
Sbjct: 594 KVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVP 653

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
            TK+VL+ +D +EKER++  HSE+LA+A GLI+T  G  +R+TKNLR+C DCH+ TK IS
Sbjct: 654 DTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLIS 713

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K A ++I+VRD  RFH F++G CSC DYW
Sbjct: 714 KIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 208/400 (52%), Gaps = 22/400 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+   L SC    SL D + +H  + D+  + DP +   L+N+Y    S+  A+ V
Sbjct: 56  PDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRV 115

Query: 138 FDKTRR-RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           F K  R R +  W+ +  A  L G   E L  +R M     GI++ +     +L AC + 
Sbjct: 116 FAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFM--LLLGIKATKSAMVTILSACSSP 173

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM--AVKNVV 254
               +L++ G+ IH+ +   G+   + +   ++ MY R G V  A  VF  M  A+++VV
Sbjct: 174 ----ALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVV 229

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           SW+ M++ Y  N    +A++L++ M      L P+ VT VS+L AC++   +  G+++H 
Sbjct: 230 SWNIMLSTYVHNDRGKDAIQLYQRM-----QLRPDKVTYVSLLSACSSAEDVGLGRVLHK 284

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            I+   L+  + V +ALV+MYA+CG     + VFD M++R ++SW ++IS+Y       +
Sbjct: 285 QIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAE 344

Query: 375 AIQIFKEMI-------YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           A  +F++M+          V P  ++FV++L AC+    +E+GKM+ E      +     
Sbjct: 345 ACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKA 404

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
              A +V+L G+  ++EEA +I + +   P  ++W +++ 
Sbjct: 405 VGTA-VVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIA 443



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 166/302 (54%), Gaps = 14/302 (4%)

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +Y+H DS  DA+  FD   +R +Y W  L  A  ++G+ +E L    RM     G+R D 
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMR--QDGVRPDA 58

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
            T+   L +C         L+ G  IH  V+         +   L++MY + G + +A  
Sbjct: 59  VTFITALGSCGDPES----LRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKR 114

Query: 244 VFSQMA-VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA 302
           VF++M   +NV+SWS M   +A +G  +EAL  FR M++    +      MV++L AC++
Sbjct: 115 VFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLG--IKATKSAMVTILSACSS 172

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RDVVSWN 360
            A ++ G+MIH  I   G +S L V +A++TMY RCG +E  + VFD MD+  RDVVSWN
Sbjct: 173 PALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWN 232

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
            ++S+Y  +  G  AIQ+++ M    + P  +++VS+L ACS A  V  G++L + +  +
Sbjct: 233 IMLSTYVHNDRGKDAIQLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVND 289

Query: 421 HM 422
            +
Sbjct: 290 EL 291



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MYA C      +  FD +++R++ SW  L++++ + G   + ++  + M   GV P  ++
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHM-IRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           F++ LG+C     + +G  + + +    + I P V +   ++++  +   L  A ++   
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSN--ALLNMYKKCGSLSHAKRVFAK 118

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAER 480
           +        W  + G+  +H NV  A R
Sbjct: 119 MERTRNVISWSIMAGAHALHGNVWEALR 146


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/672 (34%), Positives = 358/672 (53%), Gaps = 59/672 (8%)

Query: 27  PKPSSVCCCVSLNSSTTPTSLSSRN-KNELIQSLCKQGNLRQALDVLSIEPNPTQHTYEL 85
           P+P    C      ST  ++ ++R   NE I+       L  +L    I+P+ +   +  
Sbjct: 93  PQPDPTTC------STLISAFTTRGLPNEAIR-------LYASLRARGIKPHNS--VFLT 137

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +  +C      S    VH      G   D FL   LI+ Y     V+ AR VFD    + 
Sbjct: 138 VAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKD 197

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  W ++       G     L ++  M   G  ++ +  T + +L AC         LK 
Sbjct: 198 VVSWTSMSSCYVNCGLPRLGLAVFCEMGWNG--VKPNSVTLSSILPACSE----LKDLKS 251

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY-- 263
           G+ IH   +RHG    V + + L+ +YAR   V  A  VF  M  ++VVSW+ ++  Y  
Sbjct: 252 GRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFT 311

Query: 264 ---------------------------------ARNGMAFEALELFREMIMESHDLCPNS 290
                                              NG   +A+E+ R+M  ++    PN 
Sbjct: 312 NREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKM--QNLGFKPNQ 369

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           +T+ S L AC+ L +L  GK +H Y+ R  L   L  ++ALV MYA+CG L L + VFD 
Sbjct: 370 ITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDM 429

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           + ++DVV+WN++I +  +HG G + + +F+ M+  G+ P+ ++F  VL  CSH+ LVEEG
Sbjct: 430 ICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEG 489

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
             +F SM ++H++ P   HYACMVD+  RA +L EA + I+ + +EP    WG+LLG+CR
Sbjct: 490 LQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACR 549

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
           ++ NVELA+ ++ +LFE+EP N GNYV L ++   A +W E    + L++ RG+ K PG 
Sbjct: 550 VYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGC 609

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S ++V  ++++FV  D+ + + ++++  L  L  +MK  GY P T  VL D+D EEK   
Sbjct: 610 SWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAES 669

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +  HSEKLAVAFG++N +   +IR+ KNLR+C DCH+  K++SK     I+VRD  RFHH
Sbjct: 670 LCSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHH 729

Query: 651 FRNGVCSCGDYW 662
           FRNG CSC D W
Sbjct: 730 FRNGNCSCQDLW 741



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 145/286 (50%), Gaps = 8/286 (2%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A+ +FD   +      + L  A T  G   E + LY  +   G  I+     +  V KAC
Sbjct: 85  AQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARG--IKPHNSVFLTVAKAC 142

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
            AS     +    KE+H   +R G      +   LI  Y +  CV  A  VF  + VK+V
Sbjct: 143 GASGDASRV----KEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDV 198

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW++M +CY   G+    L +F EM    + + PNSVT+ S+L AC+ L  L+ G+ IH
Sbjct: 199 VSWTSMSSCYVNCGLPRLGLAVFCEM--GWNGVKPNSVTLSSILPACSELKDLKSGRAIH 256

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
           G+ +R G+   + V SALV++YARC  ++  + VFD M  RDVVSWN ++++Y  +    
Sbjct: 257 GFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYD 316

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           K + +F +M   GV     ++ +V+G C   G  E+   +   M+ 
Sbjct: 317 KGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQN 362



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G     Q +FD++ + D  + ++LIS++   G   +AI+++  +   G+ P    F++V 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            AC  +G     K + +   +  M+  +    A ++   G+   +E A ++ +DL ++  
Sbjct: 140 KACGASGDASRVKEVHDDAIRCGMMSDAFLGNA-LIHAYGKCKCVEGARRVFDDLVVKDV 198

Query: 459 PKVWGSLLGSCRIHCNV 475
              W S + SC ++C +
Sbjct: 199 VS-WTS-MSSCYVNCGL 213


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/646 (35%), Positives = 367/646 (56%), Gaps = 36/646 (5%)

Query: 26  PPK------PSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPT 79
           PP+      P++V   + +++++   SL     N+ I S  +  +L  A +V       T
Sbjct: 49  PPRRIHLVSPNNVTPNLHVDTASDVVSL-----NKTIASFVRACDLESARNVFEKMSVRT 103

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
             T+  +L   + +  ++  +     L D   + D      ++  Y     V  A   F+
Sbjct: 104 TVTWNTML---SGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFN 160

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRM---NGTGTGIRSDRFTYTYVLKACVAS 196
           K   + I  WN L       G+ ++  +L+  M   NG                 A ++ 
Sbjct: 161 KMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVS-------------WSAMISG 207

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+  +E++ +V   G   +V + T ++  Y +FG V  A  +F +MAVKN+V+W
Sbjct: 208 YVEHGDLEAAEELYKNV---GMKSVV-VETAMLTGYMKFGKVELAERIFQRMAVKNLVTW 263

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           ++MIA Y  N  A + L++F+ MI ES  + PN +++ SVL  C+ L+AL  G+ +H  +
Sbjct: 264 NSMIAGYVENCRAEDGLKVFKTMI-ESR-VRPNPLSLSSVLLGCSNLSALPLGRQMHQLV 321

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            +  L       ++L++MY +CG L+    +F  M ++DV++WN++IS Y  HG G KA+
Sbjct: 322 SKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKAL 381

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F +M    + P  I+FV+V+ AC+HAG V+ G   F+SM+KE  I     HY C++DL
Sbjct: 382 HLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDL 441

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA +L+EA  +I+++   P   ++G+LLG+CRIH N++LAE A++ L  L+PT+A  Y
Sbjct: 442 LGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGY 501

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           V LA++YAA + WD+V +V+++++   + K+PG S IE+K   + F S D  HP+   +H
Sbjct: 502 VQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIH 561

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  L  +MK  GYVP  +  L+D++ E KE+++L HSEKLA+AFGL+ T+ G  IR+ 
Sbjct: 562 KKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVF 621

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH   KFIS    +EI+VRD  RFHHFRNG CSCGDYW
Sbjct: 622 KNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/613 (36%), Positives = 345/613 (56%), Gaps = 44/613 (7%)

Query: 84  ELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH----VFD 139
           +L+LL C   ++  D   +H+H+       D F  ++LI      DS  +  H    V  
Sbjct: 20  KLVLLECC--SNARDLKIIHAHMLRTHLFFDVFAASRLIAFC--IDSTTNLLHYAIRVAS 75

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           + +   ++++NAL R  + +   E     Y  +     G+  D  T+ +++KAC      
Sbjct: 76  QIQNPNLFIYNALIRGCSTSENPENSFHYY--IKALRFGLLPDNITHPFLVKACAQ---- 129

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
                 G + H   ++HG+    ++  +L+ MYA  G +  A  VF +M   +VVSW+ M
Sbjct: 130 LENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCM 189

Query: 260 IACYARNGMAFEALELFREM-----------------------------IMESHDLCPNS 290
           IA Y R G A  A ELF  M                              +++  +  N 
Sbjct: 190 IAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANE 249

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
             MV V+ +CA L AL  G+  H Y++R  L   L + +A+V MYARCG +E    VF+ 
Sbjct: 250 TVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQ 309

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           + ++DV+ W +LI+   +HGY  KA+  F EM   G  P  I+F +VL ACSHAG+VE G
Sbjct: 310 LPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERG 369

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
             +FESM+++H + P +EHY CMVDLLGRA KL +A K +  + ++P   +W +LLG+CR
Sbjct: 370 LEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACR 429

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
           IH NVE+ ER  K L E++P  +G+YVLL+++YA A+ W +V  ++++++ +G++K PG 
Sbjct: 430 IHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGY 489

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS-AEMKEKGYVPQTKVVLYDLDAEEKER 589
           S IE+  K++ F   D+ HP+ E++  +  ++   ++K  GYV  T   ++D+D EEKE 
Sbjct: 490 SLIEIDGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEG 549

Query: 590 IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
            +  HSEKLA+A+G++       IRI KNLR+CEDCH+ TK ISK    E++VRD NRFH
Sbjct: 550 ALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFH 609

Query: 650 HFRNGVCSCGDYW 662
           HF+ G CSC DYW
Sbjct: 610 HFKEGTCSCMDYW 622



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 29/319 (9%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+  L+ +C    +    +  H     +GF+QD ++   L+++Y+    ++ AR V
Sbjct: 115 PDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSV 174

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN------------------------ 173
           F +  R  +  W  +       G  +   EL+ RM                         
Sbjct: 175 FQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAV 234

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
            T   ++++       +   V SSC     L  G++ H  V+R+  +  + + T ++DMY
Sbjct: 235 ETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMY 294

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           AR G V  A  VF Q+  K+V+ W+A+IA  A +G A +AL  F EM  +     P  +T
Sbjct: 295 ARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKG--FVPRDIT 352

Query: 293 MVSVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
             +VL AC+    +E+G  I   + R  G++  L     +V +  R GKL   +     M
Sbjct: 353 FTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKM 412

Query: 352 D-KRDVVSWNSLISSYGVH 369
             K +   W +L+ +  +H
Sbjct: 413 PVKPNAPIWRALLGACRIH 431


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/586 (37%), Positives = 341/586 (58%), Gaps = 9/586 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T+  LL  C           +H  +       D ++ T L+N+Y+    +  AR +
Sbjct: 77  PDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFL 136

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++   R   VW ++           E L LY++M         D F+   V  A + S+
Sbjct: 137 FERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKM-------EEDGFSPDEVTMATLVSA 189

Query: 198 CG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           C     L  G ++H+ +          + + L++MYA+ G +  A  VF Q++ K+V +W
Sbjct: 190 CAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAW 249

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           SA+I  Y +N  + EAL+LFRE +    ++ PN VT+++V+ ACA L  LE G+ +H YI
Sbjct: 250 SALIFGYVKNNRSTEALQLFRE-VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYI 308

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            R      + + ++L+ M+++CG ++  + +FD M  +D++SWNS+++   +HG G +A+
Sbjct: 309 TRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREAL 368

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
             F  M    + P  I+F+ VL ACSHAGLV+EGK LF  +   + +R   EHY CMVDL
Sbjct: 369 AQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDL 428

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           L RA  L EA + I  + ++P   +WGS+LG+CR++ N+EL E A++ L ELEPTN G Y
Sbjct: 429 LCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVY 488

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           +LL+++YA   MW+EVK+V+ L+  +G+QK PG S + +    +SF++ D  HP+  ++ 
Sbjct: 489 ILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEIS 548

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
            +L  +  ++K  GYV  T  VL ++D  +KE  V  HSEKLA+ +GL+ +  G  I I 
Sbjct: 549 IMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVIL 608

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+  K +SK   ++I +RD NRFHHF++G CSC DYW
Sbjct: 609 KNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 124/229 (54%), Gaps = 3/229 (1%)

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           V YA  VF+   V +V++W++M+  +  + M   AL+ + EM+  S ++ P+  T  S+L
Sbjct: 28  VGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNV-PDRFTFPSLL 86

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           + CA L   + GK++HG +++  L S L + + L+ MYA CG L+  + +F+ M  R+ V
Sbjct: 87  KGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKV 146

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
            W S+IS Y  +    +A+ ++K+M   G SP  ++  +++ AC+    +  G  L   +
Sbjct: 147 VWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI 206

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           R+  M   +V   A +V++  +   L+ A ++ + L  +     W +L+
Sbjct: 207 REMDMKICAVLGSA-LVNMYAKCGDLKTARQVFDQLS-DKDVYAWSALI 253


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/616 (36%), Positives = 349/616 (56%), Gaps = 39/616 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PT+ T   +++  +  +  +   +VH  +   GF    F+ + L+++Y+    + DAR V
Sbjct: 144 PTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRV 203

Query: 138 FDKTRRRTIYV-------------------------------WNALFRALTLAGRGEEVL 166
           F +   +T+ +                               W  +   LT  G   E L
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +++RRM   G GI  D++T+  +L AC A     +  + GK+IHA + R  Y   V + +
Sbjct: 264 DVFRRMRAEGVGI--DQYTFGSILTACGA----LAASEEGKQIHAYITRTWYEDNVFVGS 317

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+DMY++   +  A  VF +M  +N++SW+AMI  Y +N  + EA+  F EM M+   +
Sbjct: 318 ALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDG--I 375

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+  T+ SV+ +CA LA+LE+G   H   L  GL   + V +ALVT+Y +CG +E    
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +FD M   D VSW +L++ Y   G   + I +F++M+ +G+ P  ++F+ VL ACS AGL
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGL 495

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           VE+G   F+SM+K+H I P  +HY CM+DL  R+ + +EA + I+ +   P    W +LL
Sbjct: 496 VEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLL 555

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            SCR+  N+E+ + A++ L E +P N  +YVLL  ++AA   W EV  ++R +  R ++K
Sbjct: 556 SSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKK 615

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S I+ K K++ F + D+ HP   +++  L  L+++M E+GY P    VL+D+   +
Sbjct: 616 EPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADAD 675

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           K  ++  HSEKLA+AFGLI   +   IRI KNLR+C DCH+ TKFISK   ++ILVRD  
Sbjct: 676 KVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAV 735

Query: 647 RFHHFRNGVCSCGDYW 662
           RFH F +G CSCGD+W
Sbjct: 736 RFHKFSDGTCSCGDFW 751



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 176/378 (46%), Gaps = 43/378 (11%)

Query: 111 FDQ--DPFLVTK--LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FD+  DP L T+  L++  +H   V D   +F     R    +NAL    +  G     +
Sbjct: 71  FDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSV 130

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +LYR +    + +R  R T    L A +  +   S    G  +H  VLR G+     + +
Sbjct: 131 QLYRALLREES-VRPTRIT----LSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGS 185

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVV-------------------------------S 255
            L+DMYA+ G +  A  VF +M  K VV                               +
Sbjct: 186 PLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSIT 245

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+ M+    +NG+  EAL++FR M  E   +  +  T  S+L AC ALAA E+GK IH Y
Sbjct: 246 WTTMVTGLTQNGLQLEALDVFRRMRAEGVGI--DQYTFGSILTACGALAASEEGKQIHAY 303

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           I R   +  + V SALV MY++C  + L + VF  M  R+++SW ++I  YG +    +A
Sbjct: 304 ITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEA 363

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           ++ F EM   G+ P   +  SV+ +C++   +EEG   F  +     +   +     +V 
Sbjct: 364 VRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVT 422

Query: 436 LLGRANKLEEAAKIIEDL 453
           L G+   +E+A ++ +++
Sbjct: 423 LYGKCGSIEDAHRLFDEM 440



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 152/324 (46%), Gaps = 18/324 (5%)

Query: 55  LIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           ++  L + G   +ALDV     +      Q+T+  +L +C    +  +   +H+++T   
Sbjct: 249 MVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTW 308

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           ++ + F+ + L+++YS   S+  A  VF +   R I  W A+          EE +  + 
Sbjct: 309 YEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFS 368

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M     GI+ D FT   V+ +C       + L+ G + H   L  G    + +   L+ 
Sbjct: 369 EMQ--MDGIKPDDFTLGSVISSCA----NLASLEEGAQFHCLALVSGLMRYITVSNALVT 422

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           +Y + G +  A  +F +M+  + VSW+A++  YA+ G A E ++LF +M++    L P+ 
Sbjct: 423 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNG--LKPDG 480

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV---VSALVTMYARCGKLELGQCV 347
           VT + VL AC+    +E+G      + +     I+P+    + ++ +Y+R G+ +  +  
Sbjct: 481 VTFIGVLSACSRAGLVEKGCDYFDSMQKD--HDIVPIDDHYTCMIDLYSRSGRFKEAEEF 538

Query: 348 FDHMDKR-DVVSWNSLISSYGVHG 370
              M    D   W +L+SS  + G
Sbjct: 539 IKQMPHSPDAFGWATLLSSCRLRG 562



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 18/268 (6%)

Query: 57  QSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPF 116
           Q+ C +  +R   ++      P   T   ++ SC +  SL +    H     +G  +   
Sbjct: 356 QNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYIT 415

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           +   L+ +Y    S++DA  +FD+        W AL       G+ +E ++L+ +M    
Sbjct: 416 VSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKM--LV 473

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARF 235
            G++ D  T+  VL AC  S  G  L++ G +   S+ + H    I    T +ID+Y+R 
Sbjct: 474 NGLKPDGVTFIGVLSAC--SRAG--LVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRS 529

Query: 236 GCVMYAGFVFSQMA-VKNVVSWSAMI-ACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           G    A     QM    +   W+ ++ +C  R  M  E  +   E ++E+    P S  +
Sbjct: 530 GRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNM--EIGKWAAENLLETDPQNPASYVL 587

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGL 321
           +  + A        +G+      LRRG+
Sbjct: 588 LCSMHAA-------KGQWTEVAHLRRGM 608


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/600 (37%), Positives = 353/600 (58%), Gaps = 11/600 (1%)

Query: 65  LRQALDVLSIEPNPTQHTYEL--LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLI 122
           +R+A+D+L  +      T +L  L+  C    +L +   +H  +     D+  FL   L+
Sbjct: 25  IREAVDLLE-QSGAAGGTGDLEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLV 83

Query: 123 NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSD 182
           ++Y    S+ +A+ VFD  + + ++ W  L      +GRG E ++L+ RM   G     D
Sbjct: 84  DMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGE--LPD 141

Query: 183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG 242
           R      + +C A+      L  G+EIH++    G +  +     +I+MY + G +  A 
Sbjct: 142 RVALLKFIDSCGAAKA----LSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAF 197

Query: 243 FVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA 302
            VF++M  KNV+SWS MIA + +N +A EAL  F+ M  E  +L  + +T VSVL A  +
Sbjct: 198 AVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMEL--DRITYVSVLDAYTS 255

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           + ALE GK +H  I+  GLD+ + V + LV MY +CG  +  + VFD M +++VVSWN++
Sbjct: 256 VGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAM 315

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           +++YG +G   +A+ +F  M   GV P+ I+FV++L  CSH+G  ++    F  MR++  
Sbjct: 316 LAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFG 375

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERAS 482
           I P   H+ C++D+LGR+ KLEEA ++I+ + +     +W SLL +C  H + + A RA+
Sbjct: 376 ITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAA 435

Query: 483 KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSF 542
           +  F+ EP  A  Y++L+++YAA   WDE  +V++ +E  G++K  GRS IE+ ++++ F
Sbjct: 436 EEAFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEF 495

Query: 543 VSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAF 602
           V+ D  HP   ++   L  L +EM+ KGY P  KVV++ ++ EEK+ ++  HSEKLAVAF
Sbjct: 496 VAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVAF 555

Query: 603 GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           G+ +T     + I KNLR+C DCHS  KFIS    + I VRD NRFHHF  G CSCGDYW
Sbjct: 556 GIASTPPRTPLCIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/592 (38%), Positives = 343/592 (57%), Gaps = 43/592 (7%)

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
           L D    +D    T +I  Y   D ++ AR VF+         WNA+       G  +E 
Sbjct: 214 LFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEA 273

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG----I 221
           L L R+M   G  I+ D  TYT ++ AC A+   F +   GK++HA +L++  N      
Sbjct: 274 LTLCRKMRFLG--IQFDDITYTTIISAC-ANVGSFQM---GKQMHAYILKNELNPNHSFC 327

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY------------------ 263
           + +   LI +Y +   V  A  +F  M V+N+++W+A+++ Y                  
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPV 387

Query: 264 -------------ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
                        A+NG   E L+LF++M ++  + C         L AC+ L ALE G+
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPC--DFAFAGALTACSVLGALENGR 445

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +H  ++  G +S L V +A+++MYA+CG +E  + VF  M   D+VSWNS+I++ G HG
Sbjct: 446 QLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHG 505

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
           +G KAI++F +M+  GV P  I+F++VL ACSHAGLVE+G+  F SM + + I P  +HY
Sbjct: 506 HGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHY 565

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
           A MVDL  RA     A  +I+ +  +PG  VW +LL  CRIH N++L   A+++LF+L P
Sbjct: 566 ARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMP 625

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
            N G YVLL+++YA    W++V +V++L+  + ++K P  S IEV+ K++ F+  D+ HP
Sbjct: 626 QNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHP 685

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           +   ++  L  L  EMK+ GY+P TK VL+D++ E+KE  +  HSEKLAV FG++     
Sbjct: 686 EVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPD 745

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            T+R+ KN+R+C DCH+  KF+SK A +EI+VRD  RFHHF+NG CSC DYW
Sbjct: 746 ATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 150/340 (44%), Gaps = 45/340 (13%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD-PFLVT---KLINVYSHFDSVDDARHV 137
           TY  ++ +C +  S      +H+++  N  + +  F ++    LI +Y   + VD+AR +
Sbjct: 291 TYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKI 350

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM-----------------NGTGT--- 177
           F     R I  WNA+      AGR EE    +  M                 NG G    
Sbjct: 351 FYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGL 410

Query: 178 ---------GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
                    G     F +   L AC         L++G+++HA ++  GY   + +   +
Sbjct: 411 KLFKQMRLDGFEPCDFAFAGALTACSV----LGALENGRQLHAQLVHLGYESSLSVGNAM 466

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MYA+ G V  A  VF  M   ++VSW++MIA   ++G   +A+ELF +M+ E   + P
Sbjct: 467 ISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEG--VFP 524

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCV 347
           + +T ++VL AC+    +E+G+     +L   G+       + +V ++ R G     + V
Sbjct: 525 DRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIV 584

Query: 348 FDHM-DKRDVVSWNSLISSYGVHGYGGKAI----QIFKEM 382
            D M  K     W +L++   +HG     I    Q+FK M
Sbjct: 585 IDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLM 624



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 106/461 (22%), Positives = 187/461 (40%), Gaps = 126/461 (27%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF------------- 111
           +R ALD+  +     ++  +L L S     S S A  VH+H+  +GF             
Sbjct: 1   MRNALDIRLL---ANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEM 57

Query: 112 ------------------DQDPFLVTKLINVYSHFDSVDDARHVFDKT---RRRTIYVWN 150
                             + D    T LI  Y    +++  R +F+ T    R +++ +N
Sbjct: 58  YCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVF-YN 116

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV-----ASSCGFSLLKH 205
           A+       G G   LEL+R M       R D FT+T VL A V        CG      
Sbjct: 117 AMITGYAHNGDGHSALELFRAMR--RDDFRPDDFTFTSVLSALVLFVGNEQQCG------ 168

Query: 206 GKEIHASVLRHGYNGI-VHIMTTLIDMYARFG--------CVMYAGFVFSQMAVKNVVSW 256
             ++H +V++ G   +   ++  L+ +Y +           ++ A  +F +M  ++ ++W
Sbjct: 169 --QMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTW 226

Query: 257 SAMIACYARNGMAFEALELFREMI--------------------MESHDLCP-------- 288
           + MI  Y RN     A E+F  M+                     E+  LC         
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 289 -NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS----ILPVVSALVTMYARCGKLEL 343
            + +T  +++ ACA + + + GK +H YIL+  L+      L V +AL+T+Y +  K++ 
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDE 346

Query: 344 GQCVFDHMDKRDVVSWNSLISSY-------------------------------GVHGYG 372
            + +F  M  R++++WN+++S Y                                 +G+G
Sbjct: 347 ARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFG 406

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
            + +++FK+M   G  P   +F   L ACS  G +E G+ L
Sbjct: 407 DEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 154/373 (41%), Gaps = 95/373 (25%)

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA---------- 249
           FSL    + +HA ++  G+    H +  L++MY +   V+YA  +F ++           
Sbjct: 29  FSL---ARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTL 85

Query: 250 -----------------------VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
                                  +++ V ++AMI  YA NG    ALELFR   M   D 
Sbjct: 86  ITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA--MRRDDF 143

Query: 287 CPNSVTMVSVLQACAALAALEQ--GKMIHGYILRRGLDSI-LPVVSALVTMYAR------ 337
            P+  T  SVL A       EQ  G+M H  +++ G+  +   V++AL+++Y +      
Sbjct: 144 RPDDFTFTSVLSALVLFVGNEQQCGQM-HCAVVKTGMGCVSSSVLNALLSVYVKRASELG 202

Query: 338 --CGKLELGQCVFDHMDKRDVVS-------------------------------WNSLIS 364
             C  +   + +FD M KRD ++                               WN++IS
Sbjct: 203 IPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMIS 262

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
            Y   G   +A+ + ++M + G+    I++ +++ AC++ G  + GK +   + K  +  
Sbjct: 263 GYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNEL-- 320

Query: 425 PSVEHYAC------MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
            +  H  C      ++ L  + NK++EA KI   + +      W ++L     + N    
Sbjct: 321 -NPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSG---YVNAGRM 375

Query: 479 ERASKRLFELEPT 491
           E A K  FE  P 
Sbjct: 376 EEA-KSFFEEMPV 387



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 12/208 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P    +   L +C+   +L +   +H+ L   G++    +   +I++Y+    V+ A  V
Sbjct: 423 PCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESV 482

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F       +  WN++  AL   G G + +EL+ +M     G+  DR T+  VL AC  S 
Sbjct: 483 FVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQM--LKEGVFPDRITFLTVLTAC--SH 538

Query: 198 CGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVS 255
            G  L++ G+    S+L  +G          ++D++ R G   YA  V   M  K     
Sbjct: 539 AG--LVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPV 596

Query: 256 WSAMIA-CYARNGM--AFEALE-LFREM 279
           W A++A C     M    EA E LF+ M
Sbjct: 597 WEALLAGCRIHGNMDLGIEAAEQLFKLM 624


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/590 (37%), Positives = 343/590 (58%), Gaps = 20/590 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PT  T+  ++ SC     L     +H     +G   +  ++T L+   +    +DDA  +
Sbjct: 302 PTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSL 361

Query: 138 FDKTRR-RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           F      +++  W A+       G  ++ + L+  M   G  ++ + FTY+ +L      
Sbjct: 362 FSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREG--VKPNHFTYSTILT----- 414

Query: 197 SCGFSLLKHG---KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                 ++H     EIHA V++  Y     + T L+D + + G +  A  VF  +  K+V
Sbjct: 415 ------VQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDV 468

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA-LAALEQGKMI 312
           ++WSAM+A YA+ G   EA ++F ++  E   + PN  T  S++ AC A  A++EQGK  
Sbjct: 469 IAWSAMLAGYAQAGETEEAAKIFHQLTREG--IKPNEFTFCSIINACTAPTASVEQGKQF 526

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           H Y ++  L++ L V S+LVT+YA+ G +E    +F    +RD+VSWNS+IS Y  HG  
Sbjct: 527 HAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQA 586

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            KA+++F+EM    +    I+F+ V+ AC+HAGLV +G+  F  M  +H I P++EHY+C
Sbjct: 587 KKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSC 646

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
           M+DL  RA  L +A  II  +   P   VW  +L + R+H N+EL + A++++  LEP +
Sbjct: 647 MIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQH 706

Query: 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQF 552
           +  YVLL+++YAAA  W E   V++L++ R ++K PG S IEVK K YSF++ D  HP  
Sbjct: 707 SAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLS 766

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
           + +++ L  L+  +++ GY P T  V +D++ E+KE I+  HSE+LA+AFGLI T     
Sbjct: 767 DHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIP 826

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           ++I KNLR+C DCHSF K +S    + I+VRD NRFHHF+ G+CSCGDYW
Sbjct: 827 LQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 195/424 (45%), Gaps = 40/424 (9%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P  +T   +L  C    + +    VH      G      +   L+++Y+   +V D R 
Sbjct: 99  SPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRR 158

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD+   R +  WN+L    +     ++V EL+  M     G R D +T + V+ A +A+
Sbjct: 159 VFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQ--VEGYRPDYYTVSTVI-AALAN 215

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
               ++   G +IHA V++ G+     +  +LI M ++ G +  A  VF  M  K+ VSW
Sbjct: 216 QGAVAI---GMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSW 272

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           ++MIA +  NG   EA E F  M +      P   T  SV+++CA+L  L   +++H   
Sbjct: 273 NSMIAGHVINGQDLEAFETFNNMQLAGAK--PTHATFASVIKSCASLKELGLVRVLHCKT 330

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK-RDVVSWNSLISSYGVHGYGGKA 375
           L+ GL +   V++AL+    +C +++    +F  M   + VVSW ++IS Y  +G   +A
Sbjct: 331 LKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQA 390

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE----------------GKMLFESMRK 419
           + +F  M   GV P+  ++ ++L    HA  + E                G  L ++  K
Sbjct: 391 VNLFSLMRREGVKPNHFTYSTIL-TVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVK 449

Query: 420 EHMIRPSVE-----------HYACMVDLLGRANKLEEAAKIIEDLR---IEPGPKVWGSL 465
              I  +V+            ++ M+    +A + EEAAKI   L    I+P    + S+
Sbjct: 450 IGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSI 509

Query: 466 LGSC 469
           + +C
Sbjct: 510 INAC 513



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 146/277 (52%), Gaps = 10/277 (3%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A+ +FD+T  R +   N L    +   + +E L L+  +    +G+  D +T + VL  C
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSL--YRSGLSPDSYTMSCVLSVC 112

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
             S  G      G+++H   ++ G    + +  +L+DMY + G V     VF +M  ++V
Sbjct: 113 AGSFNGTV----GEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDV 168

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW++++  Y+ N    +  ELF  M +E +   P+  T+ +V+ A A   A+  G  IH
Sbjct: 169 VSWNSLLTGYSWNRFNDQVWELFCLMQVEGYR--PDYYTVSTVIAALANQGAVAIGMQIH 226

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             +++ G ++   V ++L++M ++ G L   + VFD+M+ +D VSWNS+I+ + ++G   
Sbjct: 227 ALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDL 286

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           +A + F  M   G  P+  +F SV+ +C  A L E G
Sbjct: 287 EAFETFNNMQLAGAKPTHATFASVIKSC--ASLKELG 321



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 200/418 (47%), Gaps = 20/418 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T   ++ +  +  +++  + +H+ +   GF+ +  +   LI++ S    + DAR V
Sbjct: 201 PDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVV 260

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    +    WN++     + G+  E  E +  M   G   +    T+  V+K+C AS 
Sbjct: 261 FDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGA--KPTHATFASVIKSC-ASL 317

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM-AVKNVVSW 256
               L+   + +H   L+ G +   +++T L+    +   +  A  +FS M  V++VVSW
Sbjct: 318 KELGLV---RVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSW 374

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AMI+ Y +NG   +A+ LF   +M    + PN  T  ++L    A+   E    IH  +
Sbjct: 375 TAMISGYLQNGDTDQAVNLFS--LMRREGVKPNHFTYSTILTVQHAVFISE----IHAEV 428

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++   +    V +AL+  + + G +     VF+ ++ +DV++W+++++ Y   G   +A 
Sbjct: 429 IKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAA 488

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSH-AGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           +IF ++   G+ P+  +F S++ AC+     VE+GK  F +   +  +  ++   + +V 
Sbjct: 489 KIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQ-FHAYAIKLRLNNALCVSSSLVT 547

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN----VELAERASKRLFELE 489
           L  +   +E A +I +  + E     W S++     H      +E+ E   KR  E++
Sbjct: 548 LYAKRGNIESAHEIFKRQK-ERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVD 604



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 122/260 (46%), Gaps = 13/260 (5%)

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           HA+ L   +   ++  T L D   RF     A  +F Q  ++++   + ++  Y+R    
Sbjct: 29  HANPLLQSHVVALNARTLLRDSDPRF-----AQQLFDQTPLRDLKQHNQLLFRYSRCDQT 83

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EAL LF  +      L P+S TM  VL  CA       G+ +H   ++ GL   L V +
Sbjct: 84  QEALHLFVSLYRSG--LSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGN 141

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           +LV MY + G +  G+ VFD M  RDVVSWNSL++ Y  + +  +  ++F  M   G  P
Sbjct: 142 SLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRP 201

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC--MVDLLGRANKLEEAA 447
              +  +V+ A ++ G V  G  +   + K   +    E   C  ++ +L ++  L +A 
Sbjct: 202 DYYTVSTVIAALANQGAVAIGMQIHALVVK---LGFETERLVCNSLISMLSKSGMLRDAR 258

Query: 448 KIIEDLRIEPGPKVWGSLLG 467
            + +++  +     W S++ 
Sbjct: 259 VVFDNMENKDSVS-WNSMIA 277


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/614 (39%), Positives = 343/614 (55%), Gaps = 31/614 (5%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHH-NSLSDALNVHSHLTDNGFDQD 114
           + +  + G+L  A +     P  T  TY  LL         L+DA     HL D      
Sbjct: 24  VAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADA----RHLFDR--IPT 77

Query: 115 PFLVTKLINVYSHFDS--VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           P +V+    +  HF S   D AR +F     R +  WN +   L+ +G  EE   ++  M
Sbjct: 78  PDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAM 137

Query: 173 ---NGTGTGIRSDRFTYTYVLKACVAS-SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
              N          F       AC    S      ++  E   +VL           T +
Sbjct: 138 PVRNSVSWNAMVSGF-------ACSGDMSTAEEWFRNAPEKEDAVL----------WTAM 180

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +  Y   G V+ A   F  M V+N+VSW+A++A Y +N  A +AL LFR M+ E+ ++ P
Sbjct: 181 VSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREA-NVQP 239

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N+ T+ SVL  C+ L+AL  GK IH + ++  L   L V ++LV+MY +CG L     +F
Sbjct: 240 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILF 299

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             M  RDVV+WN++IS Y  HG G +AI +F+ M   GV P+ I+FV VL AC H GL +
Sbjct: 300 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCD 359

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            G   FE M++ + I P V+HY+CMVDLL RA KLE A   I  +  EP P  +G+LL +
Sbjct: 360 FGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAA 419

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CR++ N+E AE A+ +L E +P +AG YV LA++YA A+ WD+V RV+R ++   + K P
Sbjct: 420 CRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTP 479

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S IE+K  ++ F S D  HPQ   +H  L  L+  MKE GYVP    VL+D+D   K 
Sbjct: 480 GYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHDVDETMKV 539

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           ++++ HSEKLA+AFGLI+T+ G T+RI KNLR+C DCH+  K IS   ++EI++RD  RF
Sbjct: 540 QMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREIILRDTTRF 599

Query: 649 HHFRNGVCSCGDYW 662
           HHFR G CSC DYW
Sbjct: 600 HHFRGGHCSCDDYW 613



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 130/291 (44%), Gaps = 11/291 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N ++  L K G + +A  V    P     ++  ++        +S A     +  +    
Sbjct: 115 NTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEK--- 171

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           +D  L T +++ Y    +V  A   F+    R +  WNA+          ++ L L+R M
Sbjct: 172 EDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTM 231

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                 ++ +  T + VL  C       S L  GK+IH   ++   +  + + T+L+ MY
Sbjct: 232 VREAN-VQPNASTLSSVLLGC----SNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMY 286

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
            + G +  A  +F +M  ++VV+W+AMI+ YA++G   EA+ LF  M  E  +  PN +T
Sbjct: 287 CKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE--PNWIT 344

Query: 293 MVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
            V VL AC      + G +   G     G++  +   S +V +  R GKLE
Sbjct: 345 FVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLE 395


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/656 (37%), Positives = 364/656 (55%), Gaps = 84/656 (12%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLI--NVYSHFDSVDDA 134
           N TQH    LL +C    SL +   VH+++   G D DP +  KL+  +  S  D++D A
Sbjct: 2   NHTQHLCSSLLTNC---RSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYA 58

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVL----ELYRRMNGTGTGIRSDRFTYTYVL 190
           R +F       +++ N L R L  +   +  L    E+ RR+         D F++ ++L
Sbjct: 59  RRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAP-----LDSFSFAFLL 113

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR---------------- 234
           KA  +    +  L+ G ++H   + HG +  + + TTL+ MY+                 
Sbjct: 114 KAAAS----YRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFE 169

Query: 235 -------------FGC----------------------VMYAGF-----------VFSQM 248
                        F C                      VM AG+           +F +M
Sbjct: 170 PNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEM 229

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
            VK+ VSWS MI  +A NG  +EA   FRE+  +   + PN V++   L ACA   A+E 
Sbjct: 230 PVKDDVSWSTMIVGFAHNGFFYEAFGFFREL--QQVGMRPNEVSLTGALSACADAGAIEF 287

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM-DKRDVVSWNSLISSYG 367
           GK++HG+I + G   ++ V +AL+  Y++CG + + + VF+ M +KR +VSW S+I+   
Sbjct: 288 GKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLA 347

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           +HGYG +AIQ+F EM   G+ P  I+F+S+L ACSHAGL+E+G   F  M+  + I P++
Sbjct: 348 MHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAI 407

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           EHY CMVDL GRA +L++A + I  + + P   +W +LLG+C IH NV+LAER  +RL E
Sbjct: 408 EHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSE 467

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           L+P N+G++VLL+++YA A  W +V  V+R +  + + K PG S IEV + MYSFV+ + 
Sbjct: 468 LDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEV 527

Query: 548 FHPQFEQLHALLINLSAEMKEKG-YVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLIN 606
            +   E+ +  L  +  +++ +G Y+P+   VL+D++ EEKE  V  HSEKLAVAFG+  
Sbjct: 528 QNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIAR 587

Query: 607 TSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             KG  IRI KNLR+C DCH+  K ISK    EI+VRD +RFH F+ G CSC DYW
Sbjct: 588 LCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 15/206 (7%)

Query: 67  QALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS 126
           + L  + + PN    T  L   +C    ++     +H  +  +GF     +   L++ YS
Sbjct: 258 RELQQVGMRPNEVSLTGALS--ACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYS 315

Query: 127 HFDSVDDARHVFDKT-RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
              +V  AR VF++   +R+I  W ++   L + G GEE ++L+  M    +GIR D   
Sbjct: 316 KCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEME--ESGIRPDGIA 373

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN---GIVHIMTTLIDMYARFGCVMYA- 241
           +  +L AC  S  G  L++ G E +   ++  YN    I H    ++D+Y R G +  A 
Sbjct: 374 FISILYAC--SHAG--LIEKGYE-YFYKMKDIYNIEPAIEH-YGCMVDLYGRAGQLDKAY 427

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNG 267
            F+     +   + W  ++   + +G
Sbjct: 428 EFIIHMPVLPTAIIWRTLLGACSIHG 453


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/514 (40%), Positives = 314/514 (61%), Gaps = 8/514 (1%)

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           WN+L       G  E+ L  +++M      I        Y L + + S     ++++   
Sbjct: 9   WNSLILGCVREGFEEDALSFFQKMRSRDMKIDE------YTLPSVLNSFASMKVMQNAIS 62

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           +H  +++ G+     +   LIDMYA+ G +  A  VFS+M  K+VVSW++++  Y+ NG 
Sbjct: 63  VHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGS 122

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
             EA++LF +M +    + P+ + + SVL ACA L  ++ G+ IH  +++ GL+S L V 
Sbjct: 123 YEEAIKLFCKMRISG--VYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVD 180

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           ++LVTMYA+CG +      FD+M  RDV+SW +LI  Y  +G G  ++Q + +MI  G  
Sbjct: 181 NSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTK 240

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
           P  I+F+ +L ACSH GL+  G+  FE+M K + I+P  EHYACM+DLLGR+ KL EA  
Sbjct: 241 PDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKG 300

Query: 449 IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
           ++  + + P   VW +LL +CR+H  +EL E A+K LFELEP N+  YV+L+++Y+AA  
Sbjct: 301 LLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGK 360

Query: 509 WDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKE 568
           W++  R++RL+ +RG+ K PG S IE   K+ +F+S D  HP   ++++ +  +   +KE
Sbjct: 361 WEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKE 420

Query: 569 KGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSF 628
            GYVP     L+D D E KE  +  HSEKLAVAFGL+   +G  IRI KNLR+C DCH+ 
Sbjct: 421 AGYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTA 480

Query: 629 TKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            K+ SK   + I++RD N FHHF  G CSCGDYW
Sbjct: 481 MKYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 156/327 (47%), Gaps = 22/327 (6%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI    ++G    AL       S +    ++T   +L S      + +A++VH  +  
Sbjct: 10  NSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLIIK 69

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF+    +   LI++Y+    +D A  VF K   + +  W +L    +  G  EE ++L
Sbjct: 70  TGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKL 129

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M    +G+  D+     VL AC       +++  G++IHA++++ G    + +  +L
Sbjct: 130 FCKMR--ISGVYPDQIAVASVLSACAE----LTVMDFGQQIHATLVKSGLESSLSVDNSL 183

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           + MYA+ G ++ A   F  M  ++V+SW+A+I  YA+NG    +L+ + +MI       P
Sbjct: 184 VTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTK--P 241

Query: 289 NSVTMVSVLQACAALAALEQGK-----MIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
           + +T + +L AC+    L  G+     M   Y ++ G +      + ++ +  R GKL  
Sbjct: 242 DYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEH----YACMIDLLGRSGKLAE 297

Query: 344 GQCVFDHM-DKRDVVSWNSLISSYGVH 369
            + + + M    D V W +L+++  VH
Sbjct: 298 AKGLLNQMVVAPDAVVWKALLAACRVH 324



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 98/172 (56%), Gaps = 2/172 (1%)

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M   + VSW+++I    R G   +AL  F++  M S D+  +  T+ SVL + A++  ++
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQK--MRSRDMKIDEYTLPSVLNSFASMKVMQ 58

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
               +H  I++ G ++   V +AL+ MYA+ GKL+    VF  M  +DVVSW SL++ Y 
Sbjct: 59  NAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYS 118

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
            +G   +AI++F +M   GV P  I+  SVL AC+   +++ G+ +  ++ K
Sbjct: 119 HNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVK 170


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/665 (35%), Positives = 357/665 (53%), Gaps = 76/665 (11%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           ++  LD+ +    PTQ T   +L SC    + +    VHS +   G      +   ++N+
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNM 208

Query: 125 Y-------------------------------SHFDSVDDARHVFDKTRRRTIYVWNALF 153
           Y                               +H   +D A  +F+    R+I  WNA+ 
Sbjct: 209 YGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMI 268

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                 G   + L+L+ RM    + +  D FT T VL AC         ++ GK++HA +
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHESS-MAPDEFTITSVLSACA----NLGNVRIGKQVHAYI 323

Query: 214 LRH--GYNGIVHIMTTLIDMYARFGCVMYA----------------------GFV----- 244
           LR    YN    +   LI  YA+ G V  A                      G+V     
Sbjct: 324 LRTEMAYNS--QVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDM 381

Query: 245 ------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
                 F  M  ++VV+W+AMI  Y +NG   EA++LFR MI    +  PNS T+ +VL 
Sbjct: 382 ESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE--PNSYTLAAVLS 439

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM-DKRDVV 357
            CA+LA L+ GK IH   +R  L+    V +A++TMYAR G     + +FD +  +++ +
Sbjct: 440 VCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETI 499

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           +W S+I +   HG G +A+ +F+EM+  GV P  I++V VL ACSHAG V EGK  ++ +
Sbjct: 500 TWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQI 559

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
           + EH I P + HYACMVDLL RA    EA + I  + +EP    WGSLL +CR+H N EL
Sbjct: 560 KNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAEL 619

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
           AE A+++L  ++P N+G Y  +A+VY+A   W +  R+ +  + + ++K  G S   ++ 
Sbjct: 620 AELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRS 679

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
           K++ F + D  HPQ + ++A+   +  E+K  G+VP  + VL+D+D E KE ++  HSEK
Sbjct: 680 KIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEK 739

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AFGLI+T +  T+R+ KNLR+C DCH+  K ISK  ++EI+VRD  RFHHFR+G+CS
Sbjct: 740 LAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCS 799

Query: 658 CGDYW 662
           C DYW
Sbjct: 800 CKDYW 804



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 168/374 (44%), Gaps = 79/374 (21%)

Query: 111 FDQDP------FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR-GE 163
           FD+ P      F    L+++++    + DAR VF +   R    W  +   L  AGR GE
Sbjct: 88  FDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGE 147

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
            +  L   ++ T  G    +FT T VL +C  +  G      G+++H+ V++ G    V 
Sbjct: 148 AIKTL---LDMTADGFTPTQFTLTNVLSSCAVTQAG----AVGRKVHSFVVKLGLGSCVP 200

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNV------------------------------ 253
           +  ++++MY + G    A  VF +M V++V                              
Sbjct: 201 VANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRS 260

Query: 254 -VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
            VSW+AMIA Y +NG+  +AL+LF  M+ ES  + P+  T+ SVL ACA L  +  GK +
Sbjct: 261 IVSWNAMIAGYNQNGLDAKALKLFSRMLHES-SMAPDEFTITSVLSACANLGNVRIGKQV 319

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH---------------------- 350
           H YILR  +     V +AL++ YA+ G +E  + + D                       
Sbjct: 320 HAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIG 379

Query: 351 -----------MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
                      M+ RDVV+W ++I  Y  +G   +AI +F+ MI  G  P+  +  +VL 
Sbjct: 380 DMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLS 439

Query: 400 ACSHAGLVEEGKML 413
            C+    ++ GK +
Sbjct: 440 VCASLACLDYGKQI 453



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 35/262 (13%)

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V    +L+ M+A+ G +  A  VF++M  ++ VSW+ M+    R G   EA++   +M  
Sbjct: 98  VFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTA 157

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           +     P   T+ +VL +CA   A   G+ +H ++++ GL S +PV ++++ MY +CG  
Sbjct: 158 DG--FTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDS 215

Query: 342 ELGQCVFDHMDKRDVVSWNSLIS-------------------------------SYGVHG 370
           E    VF+ M  R V SWN+++S                                Y  +G
Sbjct: 216 ETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNG 275

Query: 371 YGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
              KA+++F  M++   ++P   +  SVL AC++ G V  GK +   + +  M   S   
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT 335

Query: 430 YACMVDLLGRANKLEEAAKIIE 451
            A ++    ++  +E A +I++
Sbjct: 336 NA-LISTYAKSGSVENARRIMD 356


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/591 (40%), Positives = 346/591 (58%), Gaps = 12/591 (2%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
             P  T  +  +L L  +H  +L DAL + S L          LV  L        S   
Sbjct: 55  FRPPSTLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLAS--- 111

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM-NGTGTGIRSDRFTYTYVLKA 192
           AR +FD+  RR  + W+A+  A    G+    L +YRRM    G+    + FT +  L A
Sbjct: 112 ARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALAA 171

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
             A+       + G+E+H  V+R G +    + + L DMYA+ G V  A  VF +M V++
Sbjct: 172 ATAAR----CARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRD 227

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           VVSW+AM+  Y       E   LF  M+     + PN  T   VL+ACA   + + GK +
Sbjct: 228 VVSWTAMVERYFDARRDGEGFRLFVRMLRSG--IQPNEFTYAGVLRACAEFTSEKLGKQV 285

Query: 313 HGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           HG + + R  DS     SALV MY++ G +     VF  M K D+VSW ++IS Y  +G 
Sbjct: 286 HGRMTKSRAGDSCF-AESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQ 344

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             +A++ F  ++  G  P  ++FV VL AC+HAGLV++G  +F S++ E+ I  + +HYA
Sbjct: 345 PDEALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYA 404

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           C++DLL R+   E A ++I  + ++P   +W SLLG CRIH NV LA  A++ LFE+EP 
Sbjct: 405 CVIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPE 464

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
           N   YV LA++YA+  ++DEV+  +R++E +G+ K+P  S IEV  +M+ F+  D+ HPQ
Sbjct: 465 NPATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQ 524

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
            EQ++ALL  L  +M+E+GYV  T  VL+D++ E+K++ +  HSE+LAVAFG+I T KG 
Sbjct: 525 AEQVYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGA 584

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            I++ KNLR+C DCH+  K ISK   +EI+VRD NRFHHF+NG CSC DYW
Sbjct: 585 PIKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/586 (37%), Positives = 345/586 (58%), Gaps = 9/586 (1%)

Query: 78   PTQHTYELLLLSCTH-HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P Q T   +L +C+        A  +H+     G   D F+ T LI+VYS    +++A  
Sbjct: 1034 PDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEF 1093

Query: 137  VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
            +F       +  WNA+     ++G   + L LY  M  +G   RSD+ T     KA    
Sbjct: 1094 LFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGE--RSDQITLVNAAKA---- 1147

Query: 197  SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
            + G   LK GK+IHA V++ G+N  + + + ++DMY + G +  A  VFS++   + V+W
Sbjct: 1148 AGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAW 1207

Query: 257  SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
            + MI+    NG    AL  + +M +    + P+  T  ++++AC+ L ALEQG+ IH  I
Sbjct: 1208 TTMISGCVENGQEEHALFTYHQMRLSK--VQPDEYTFATLVKACSLLTALEQGRQIHANI 1265

Query: 317  LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            ++        V+++LV MYA+CG +E  + +F   + R + SWN++I     HG   +A+
Sbjct: 1266 VKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEAL 1325

Query: 377  QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            Q FK M   GV P  ++F+ VL ACSH+GLV E    F SM+K + I P +EHY+C+VD 
Sbjct: 1326 QFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDA 1385

Query: 437  LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
            L RA ++EEA K+I  +  E    ++ +LL +CR+  + E  +R +++L  LEP+++  Y
Sbjct: 1386 LSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAY 1445

Query: 497  VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
            VLL++VYAAA+ W+ V   + ++    ++K PG S +++K K++ FV+ D  H + + ++
Sbjct: 1446 VLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIY 1505

Query: 557  ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
              +  +   ++E+GYVP T   L D++ E+KE  +  HSEKLA+A+GL+ T    T+R+ 
Sbjct: 1506 NKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVI 1565

Query: 617  KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C DCHS  K+ISK   +EI++RD NRFHHFRNG+CSCGDYW
Sbjct: 1566 KNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 181/366 (49%), Gaps = 10/366 (2%)

Query: 82   TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
            T+ ++L      N L     +H  +  +G DQ   +   LIN+Y    SV  AR VF + 
Sbjct: 937  TFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQM 996

Query: 142  RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
                +  WN +    TL+G  E  + ++  +      +  D+FT   VL+AC +   G+ 
Sbjct: 997  NEVDLISWNTMISGCTLSGLEECSVGMFVHL--LRDSLLPDQFTVASVLRACSSLEGGYY 1054

Query: 202  LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L     +IHA  ++ G      + T LID+Y++ G +  A F+F      ++ SW+A++ 
Sbjct: 1055 L---ATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMH 1111

Query: 262  CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
             Y  +G   +AL L+  ++M+      + +T+V+  +A   L  L+QGK IH  +++RG 
Sbjct: 1112 GYIVSGDFPKALRLY--ILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGF 1169

Query: 322  DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
            +  L V S ++ MY +CG++E  + VF  +   D V+W ++IS    +G    A+  + +
Sbjct: 1170 NLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQ 1229

Query: 382  MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH-MIRPSVEHYACMVDLLGRA 440
            M    V P   +F +++ ACS    +E+G+ +  ++ K +    P V     +VD+  + 
Sbjct: 1230 MRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV--MTSLVDMYAKC 1287

Query: 441  NKLEEA 446
              +E+A
Sbjct: 1288 GNIEDA 1293



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 171/372 (45%), Gaps = 43/372 (11%)

Query: 79   TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
            T+HT   +   C    S S + ++H +    G   D F+   L+N+Y+ F  + +AR +F
Sbjct: 759  TRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLF 818

Query: 139  DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
            D    R + +WN + +A        E + L+   + TG   R D  T   + +      C
Sbjct: 819  DGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTG--FRPDDVTLRTLSRVV---KC 873

Query: 199  GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
              ++L+  K+  A               T + MY   G               +V+ W+ 
Sbjct: 874  KKNILEL-KQFKA-------------YATKLFMYDDDG--------------SDVIVWNK 905

Query: 259  MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
             ++ + + G A+EA++ F +MI  S   C + +T V +L   A L  LE GK IHG ++R
Sbjct: 906  ALSRFLQRGEAWEAVDCFVDMI-NSRVAC-DGLTFVVMLTVVAGLNCLELGKQIHGIVMR 963

Query: 319  RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
             GLD ++ V + L+ MY + G +   + VF  M++ D++SWN++IS   + G    ++ +
Sbjct: 964  SGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGM 1023

Query: 379  FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR----KEHMIRPSVEHYACMV 434
            F  ++   + P   +  SVL ACS    +E G  L   +     K  ++  S    A ++
Sbjct: 1024 FVHLLRDSLLPDQFTVASVLRACSS---LEGGYYLATQIHACAMKAGVVLDSFVSTA-LI 1079

Query: 435  DLLGRANKLEEA 446
            D+  +  K+EEA
Sbjct: 1080 DVYSKRGKMEEA 1091



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 160/327 (48%), Gaps = 15/327 (4%)

Query: 146  IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
            + VWN         G   E ++ +  M    + +  D  T+  +L      +C    L+ 
Sbjct: 900  VIVWNKALSRFLQRGEAWEAVDCFVDM--INSRVACDGLTFVVMLTVVAGLNC----LEL 953

Query: 206  GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
            GK+IH  V+R G + +V +   LI+MY + G V  A  VF QM   +++SW+ MI+    
Sbjct: 954  GKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTL 1013

Query: 266  NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL-AALEQGKMIHGYILRRG--LD 322
            +G+   ++ +F  ++ +S  L P+  T+ SVL+AC++L         IH   ++ G  LD
Sbjct: 1014 SGLEECSVGMFVHLLRDS--LLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLD 1071

Query: 323  SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
            S   V +AL+ +Y++ GK+E  + +F + D  D+ SWN+++  Y V G   KA++++  M
Sbjct: 1072 SF--VSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILM 1129

Query: 383  IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
               G     I+ V+   A      +++GK +   + K       +   + ++D+  +  +
Sbjct: 1130 QESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRG-FNLDLFVTSGVLDMYLKCGE 1188

Query: 443  LEEAAKIIEDLRIEPGPKVWGSLLGSC 469
            +E A ++  ++   P    W +++  C
Sbjct: 1189 MESARRVFSEIP-SPDDVAWTTMISGC 1214



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 162/381 (42%), Gaps = 40/381 (10%)

Query: 94   NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT--RRRTIYVWNA 151
            + LS     H+ +  +G   D F+   LI +Y+   S+  AR +FD T    R +  WNA
Sbjct: 670  SDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNA 729

Query: 152  LFRALTL-AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
            +  AL   A +  +   L+R +  +   + + R T   V K C+ S+   +     + +H
Sbjct: 730  ILSALAAHADKSHDGFHLFRLLRRSV--VSTTRHTLAPVFKMCLLSASPSA----SESLH 783

Query: 211  ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAF 270
               ++ G    V +   L+++YA+FG +  A  +F  MAV++VV W+ M+  Y    + +
Sbjct: 784  GYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEY 843

Query: 271  EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
            EA+ LF E         P+ VT+ ++ +       + + K    Y  +            
Sbjct: 844  EAMLLFSEF--HRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATK------------ 889

Query: 331  LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
             + MY                D  DV+ WN  +S +   G   +A+  F +MI   V+  
Sbjct: 890  -LFMYDD--------------DGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACD 934

Query: 391  PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
             ++FV +L   +    +E GK +   + +  + +  V    C++++  +A  +  A  + 
Sbjct: 935  GLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQ-VVSVGNCLINMYVKAGSVSRARSVF 993

Query: 451  EDLRIEPGPKVWGSLLGSCRI 471
              +  E     W +++  C +
Sbjct: 994  GQMN-EVDLISWNTMISGCTL 1013



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 9/209 (4%)

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           +L+  +A+S     L  GK  HA +L  G++    +   LI MYA+ G +  A  +F   
Sbjct: 662 ILRQAIAASD----LSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTT 717

Query: 249 AVKN--VVSWSAMIACYARNG-MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
              N  +V+W+A+++  A +   + +   LFR  ++    +     T+  V + C   A+
Sbjct: 718 PDTNRDLVTWNAILSALAAHADKSHDGFHLFR--LLRRSVVSTTRHTLAPVFKMCLLSAS 775

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
               + +HGY ++ GL   + V  ALV +YA+ G +   + +FD M  RDVV WN ++ +
Sbjct: 776 PSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKA 835

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y       +A+ +F E    G  P  ++ 
Sbjct: 836 YVDTCLEYEAMLLFSEFHRTGFRPDDVTL 864



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM--D 352
           S+L+   A + L  GK  H  IL  G      V + L+TMYA+CG L   + +FD     
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 353 KRDVVSWNSLISSYGVHG 370
            RD+V+WN+++S+   H 
Sbjct: 721 NRDLVTWNAILSALAAHA 738


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/612 (36%), Positives = 346/612 (56%), Gaps = 47/612 (7%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           L + C       DA  V     D   ++D    T ++  +     V  AR  F++     
Sbjct: 205 LYMKCDAPGVTRDARKV----LDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEF 260

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
             VWNA+      +G   E  EL+RRM      I  D FT+T +L AC  ++ GF L  H
Sbjct: 261 DVVWNAMISGYVQSGMCAEAFELFRRM--VSKRIPPDEFTFTSLLSAC--ANAGFFL--H 314

Query: 206 GKEIHASVLR--------------------HGYNGIVHIMTTLIDM-------------- 231
           GK +H   +R                    +  +G + + T + D               
Sbjct: 315 GKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILS 374

Query: 232 -YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
            Y   GC+  A  +F +M  K+ +SW  M++ Y   G+A +AL+LF +M   S D+ P  
Sbjct: 375 GYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQM--RSEDVKPCD 432

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T    + AC  L AL+ GK +H ++++ G ++     +AL+TMYARCG ++  + VF  
Sbjct: 433 YTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLV 492

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M   D VSWN++IS+ G HG+G +A+++F +M+  G+ P  ISF+++L AC+HAGLV++G
Sbjct: 493 MPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDG 552

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
              FESM ++  I P  +HYA ++DLLGRA ++ EA  +I+ +  EP P +W ++L  CR
Sbjct: 553 FQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCR 612

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
           I+ ++EL   A+ +LF++ P + G Y+LL++ Y+AA  W +  RV++L+  RG++K PG 
Sbjct: 613 INGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGC 672

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S IEV  K++ F+  D  HP   +++  L  + A+M++ GYVP TK  L D+   EKE +
Sbjct: 673 SWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYV 732

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +  HSE+LAV+FGL+    G T+ + KNL++C DCH+   F+S+   +EI+VRDV RFHH
Sbjct: 733 LFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHH 792

Query: 651 FRNGVCSCGDYW 662
           F++G CSCG+YW
Sbjct: 793 FKDGECSCGNYW 804



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 121/272 (44%), Gaps = 41/272 (15%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAV--KNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           T+L+  YA  G +  +   F  + V  ++ V  +AMI+ +AR  +A  A+ +FR ++   
Sbjct: 93  TSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASD 152

Query: 284 HDLCPNSVTMVSVLQACAAL--AALEQGKMIHGYILRRGLDSILPVVSALVTMYARC--- 338
             L P+  +  S+L A   +   A+     +H  + + G  ++L V +AL+ +Y +C   
Sbjct: 153 DSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAP 212

Query: 339 -------------------------------GKLELGQCVFDHMDKRDVVSWNSLISSYG 367
                                          G +   +  F+ +D    V WN++IS Y 
Sbjct: 213 GVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYV 272

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML---FESMRKEHMIR 424
             G   +A ++F+ M+   + P   +F S+L AC++AG    GK +   F  ++ + +  
Sbjct: 273 QSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPE 332

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
            ++     +V L  ++ K+  A KI + + ++
Sbjct: 333 AALPVNNALVTLYSKSGKIAVATKIFDSMTLK 364



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 14/215 (6%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P  +TY   + +C    +L     +H+HL   GF+        L+ +Y+   +V DAR 
Sbjct: 429 KPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARL 488

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF          WNA+  AL   G G E LEL+ +M     GI  DR ++  +L AC  +
Sbjct: 489 VFLVMPNVDSVSWNAMISALGQHGHGREALELFDQM--VAQGIYPDRISFLTILTACNHA 546

Query: 197 SCGFSLLKHGKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
                L+  G +   S+ R  G +        LID+  R G +  A  +   M  +   +
Sbjct: 547 ----GLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPA 602

Query: 256 -WSAMIACYARNG----MAFEALELFREMIMESHD 285
            W A+++    NG     A+ A +LF+  ++  HD
Sbjct: 603 IWEAILSGCRINGDMELGAYAADQLFK--MVPEHD 635


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/610 (35%), Positives = 352/610 (57%), Gaps = 20/610 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N ++ +  + G +++A ++          ++  L+      + + +A  + + +      
Sbjct: 235 NGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQ---- 290

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           +D      +++ Y+    + +AR +FD    R ++ W A+       G  EE   ++  M
Sbjct: 291 RDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM 350

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                    D+   ++   A +A+     +++  KE+  ++        V    T++  Y
Sbjct: 351 --------PDKNAVSW--NAMMAAYVQRRMMEEAKELFDAMPCRN----VASWNTMLTGY 396

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           A+ G +  A  +F  M  K+ VSW+AM+A Y++ G + E L+LF+EM      +  N   
Sbjct: 397 AQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWV--NRSA 454

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
              VL  CA +AALE G  +H  +++ G      V +AL+ MY +CG +E     F+ M+
Sbjct: 455 FACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEME 514

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
           +RDVVSWN++I+ Y  HG+G +A+++F  M      P  I+ V VL ACSH+GLVE+G  
Sbjct: 515 ERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGIS 574

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            F SM ++  +    EHY CM+DLLGRA +L+EA  +++D+  EP   +WG+LLG+ RIH
Sbjct: 575 YFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIH 634

Query: 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
            N EL   A++++FELEP NAG YVLL+++YA++  W +V +++ ++  RG++KVPG S 
Sbjct: 635 RNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSW 694

Query: 533 IEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVL 592
           IEV+ K+++F   D  HP+ E ++A L +L   MK+ GYV  T +VL+D++ EEKE ++ 
Sbjct: 695 IEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLK 754

Query: 593 GHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652
            HSEKLAVA+G++    G  IR+ KNLR+C DCH+  K IS    + I++RD NRFHHFR
Sbjct: 755 YHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFR 814

Query: 653 NGVCSCGDYW 662
           +G CSCGDYW
Sbjct: 815 DGSCSCGDYW 824



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 165/366 (45%), Gaps = 28/366 (7%)

Query: 48  SSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           S+   N ++      G L QAL      P P   +Y  LL +    +SL+D       L 
Sbjct: 137 STSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADV----RALF 192

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
           D    +D      +I+ +++   V  ARH FD    +    WN +  A    GR +E  E
Sbjct: 193 DEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARE 252

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+       +    D  ++  ++   V      S ++  +++   + +      V    T
Sbjct: 253 LF------DSRTEWDAISWNALMAGYVQR----SQIEEAQKMFNKMPQRD----VVSWNT 298

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           ++  YAR G +  A  +F    +++V +W+A+++ YA+NGM  EA  +F  M  +     
Sbjct: 299 MVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDK----- 353

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
            N+V+  +++ A      +E+ K +   +  R + S     + ++T YA+ G L+  + +
Sbjct: 354 -NAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASW----NTMLTGYAQAGMLDEARAI 408

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F  M ++D VSW +++++Y   G+  + +Q+FKEM   G   +  +F  VL  C+    +
Sbjct: 409 FGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAAL 468

Query: 408 EEGKML 413
           E G  L
Sbjct: 469 ECGMQL 474



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 151/365 (41%), Gaps = 48/365 (13%)

Query: 112 DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR 171
           D +     + I  +     V DA  +F    RR+   +N +       GR  + L  +R 
Sbjct: 104 DMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRS 163

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASS--CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           +       R D F+Y  +L A   SS       L     +  SV    YN        +I
Sbjct: 164 IP------RPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSV---SYN-------VMI 207

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI----MESHD 285
             +A  G V  A   F     K+ VSW+ M+A Y RNG   EA ELF        +  + 
Sbjct: 208 SSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNA 267

Query: 286 LCPNSVTMVSVLQACAALAALEQ------GKMIHGYILR------RGLDSILPV-----V 328
           L    V    + +A      + Q        M+ GY  R      R L  + P+      
Sbjct: 268 LMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTW 327

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           +A+V+ YA+ G LE  + VFD M  ++ VSWN+++++Y       +A ++F  M    V+
Sbjct: 328 TAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVA 387

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
               S+ ++L   + AG+++E + +F  M ++  +      +A M+    +    EE  +
Sbjct: 388 ----SWNTMLTGYAQAGMLDEARAIFGMMPQKDAV-----SWAAMLAAYSQIGFSEETLQ 438

Query: 449 IIEDL 453
           + +++
Sbjct: 439 LFKEM 443


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/615 (37%), Positives = 357/615 (58%), Gaps = 45/615 (7%)

Query: 27  PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELL 86
           P+P  +  C   NS   P  L  R     +  + + G+L Q  ++L          Y++ 
Sbjct: 79  PEPREIGKCS--NSHDLPCELDER-----VAGIDQNGDLNQMSNIL----------YQV- 120

Query: 87  LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI 146
                         N +  + D G   D +   +  + Y     +   R VF+   +R I
Sbjct: 121 --------------NTYKKVFDEGKTSDVYSKKEKESYY-----LGSLRKVFEMMPKRDI 161

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206
             WN +       G  E+ L + R M      +R D FT + VL          +LLK G
Sbjct: 162 VSWNTVISGNAQNGMHEDALMMVREMGNAD--LRPDSFTLSSVLPIFAEY---VNLLK-G 215

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           KEIH   +R+GY+  V I ++LIDMYA+   V  +  VF  +   + +SW+++IA   +N
Sbjct: 216 KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQN 275

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           GM  E L+ F++M++    + PN V+  S++ ACA L  L  GK +HGYI+R   D  + 
Sbjct: 276 GMFDEGLKFFQQMLIAK--IKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVF 333

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           + SALV MYA+CG +   + +FD M+  D+VSW ++I  Y +HG+   AI +FK M   G
Sbjct: 334 IASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEG 393

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           V P+ ++F++VL ACSHAGLV+E    F SM +++ I P +EHYA + DLLGR  +LEEA
Sbjct: 394 VKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEA 453

Query: 447 AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
            + I D+ IEP   VW +LL +CR+H N+ELAE+ SK+LF ++P N G YVLL+++Y+AA
Sbjct: 454 YEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAA 513

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
             W + ++++  +  +G++K P  S IE+K K+++FV+ D+ HP +++++  L  L  +M
Sbjct: 514 GRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQM 573

Query: 567 KEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
           + +GYV  T  VL+D++ E+K  ++  HSE+LA+ FG+I+T  G TIR+TKNLR+C DCH
Sbjct: 574 EREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCH 633

Query: 627 SFTKFISKFANKEIL 641
           + TKFISK   +EI+
Sbjct: 634 TATKFISKIVGREIV 648



 Score = 38.9 bits (89), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
           P+     SVL++C  +  L  G+ +HG I+R G+   L   +AL+ MY++   LE G
Sbjct: 8   PDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEG 64


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/625 (35%), Positives = 354/625 (56%), Gaps = 23/625 (3%)

Query: 36   VSLNSSTTPTSLSSRNKN--ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHH 93
            +S NS  +  + +  N    EL   +  QG+   +  +LS+ P   +  Y  +       
Sbjct: 477  ISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFV------- 529

Query: 94   NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
                    VH +    G   +  L   L+++YS+         +F    ++ +  W A+ 
Sbjct: 530  -----GRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMI 584

Query: 154  RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
             + T AG  ++V  L + M     GI+ D F  T VL        G   LK GK +H   
Sbjct: 585  TSYTRAGLFDKVAGLLQEM--VLDGIKPDVFAVTSVLHGFA----GDESLKQGKSVHGYA 638

Query: 214  LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
            +R+G   ++ +   L++MY     +  A  VF  +  K+++SW+ +I  Y+RN  A E+ 
Sbjct: 639  IRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESF 698

Query: 274  ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
             LF +M+++     PN+VTM  +L A A++++LE+G+ IH Y LRRG        +ALV 
Sbjct: 699  SLFSDMLLQ---FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVD 755

Query: 334  MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
            MY +CG L + + +FD + K++++SW  +I+ YG+HG G  A+ +F++M   GV P   S
Sbjct: 756  MYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTAS 815

Query: 394  FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            F ++L AC H+GL  EG   F +MRKE+ I P ++HY C+VDLL     L+EA + IE +
Sbjct: 816  FSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESM 875

Query: 454  RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
             IEP   +W SLL  CRIH +V+LAE+ + R+F+LEP N G YVLLA++YA A+ W+ VK
Sbjct: 876  PIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVK 935

Query: 514  RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
            ++K  +  RGL++  G S IEV+ K++ F++ +  HP++ ++   L +++  M+E+G+ P
Sbjct: 936  KLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARRMREEGHDP 995

Query: 574  QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
            + K  L   +    +  + GHS KLAV FG+++  +G  IR+TKN ++C  CH   KFIS
Sbjct: 996  KKKYSLMGANDAVHDEALCGHSSKLAVTFGVLHLPEGRPIRVTKNSKVCSHCHEAAKFIS 1055

Query: 634  KFANKEILVRDVNRFHHFRNGVCSC 658
            K  N+EI++RD +RFHHF  G CSC
Sbjct: 1056 KMCNREIILRDSSRFHHFEGGRCSC 1080



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 187/388 (48%), Gaps = 26/388 (6%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVH 103
           P+ + S + N  IQ LC+ G+L  AL +L  +      +Y  ++  C    SL  A   H
Sbjct: 58  PSRVLSSDVNLRIQRLCQAGDLAAALRLLGSDGGVGVRSYCAVVQLCGEERSLEAARRAH 117

Query: 104 SHL-TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT--IYVWNALFRALTLAG 160
           + +    G      L  +L+  Y     +  AR VFD+   R   + VW +L  A   AG
Sbjct: 118 ALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAG 177

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
             +E + L+R+M     G+  D    + VLK C+AS      +  G+ IH  + + G   
Sbjct: 178 DFQEGVSLFRQMQ--CCGVSPDAHAVSCVLK-CIAS---LGSITEGEVIHGLLEKLGLGE 231

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
              +   LI +Y+R GC+  A  VF  M  ++ +SW++ I+ Y  NG    A++LF +M 
Sbjct: 232 ACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMW 291

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---------SAL 331
            E  ++  +SVT++SVL ACA L     GK++HGY ++ GL   L  V         S L
Sbjct: 292 SEGTEI--SSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKL 349

Query: 332 VTMYARCGKLELGQCVFDHM-DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           V MY +CG +   + VFD M  K +V  WN ++  Y       +++ +F++M   G++P 
Sbjct: 350 VFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPD 409

Query: 391 PISFVSVLG-----ACSHAGLVEEGKML 413
             +   +L      +C+  GLV  G ++
Sbjct: 410 EHALSCLLKCITCLSCARDGLVAHGYLV 437



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 170/377 (45%), Gaps = 26/377 (6%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDA 99
           P     R    L+ +  K G+ ++ + +         +P  H    +L       S+++ 
Sbjct: 158 PRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEG 217

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
             +H  L   G  +   +   LI +YS    ++DA  VFD    R    WN+        
Sbjct: 218 EVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSN 277

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY- 218
           G  +  ++L+ +M   GT I S   T   VL AC  +  GF L+  GK +H   ++ G  
Sbjct: 278 GWHDRAVDLFSKMWSEGTEISS--VTVLSVLPAC--AELGFELV--GKVVHGYSMKSGLL 331

Query: 219 -------NGIVHIM-TTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMIACYARNGMA 269
                  +GI   + + L+ MY + G +  A  VF  M  K NV  W+ ++  YA+    
Sbjct: 332 WDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEF 391

Query: 270 FEALELFREMIMESHDL--CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
            E+L LF +M    H+L   P+   +  +L+    L+    G + HGY+++ G  +   V
Sbjct: 392 EESLLLFEQM----HELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAV 447

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
            +AL++ YA+   ++    VFD M  +D +SWNS+IS    +G   +AI++F  M   G 
Sbjct: 448 CNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGH 507

Query: 388 SPSPISFVSVLGACSHA 404
                + +SVL AC+ +
Sbjct: 508 ELDSTTLLSVLPACARS 524


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/592 (38%), Positives = 350/592 (59%), Gaps = 19/592 (3%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P   Q   ELL  S +    L     +H+ +   GF +   L+T+L+        +  AR
Sbjct: 7   PLTKQMLSELLRASSSKPKQLK---KIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYAR 63

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            VFD+  +  I++WN LF+         E L LY++M   G  +R D FTY +V+KA   
Sbjct: 64  QVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLG--VRPDEFTYPFVVKAISQ 121

Query: 196 ---SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
               SCGF+L       HA V+++G+  +  + T L+ MY +FG +  A F+F  M VK+
Sbjct: 122 LGDFSCGFAL-------HAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKD 174

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           +V+W+A +A   + G +  ALE F +M  ++     +S T+VS+L AC  L +LE G+ I
Sbjct: 175 LVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQF--DSFTVVSMLSACGQLGSLEIGEEI 232

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           +    +  +D  + V +A + M+ +CG  E  + +F+ M +R+VVSW+++I  Y ++G  
Sbjct: 233 YDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDS 292

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM--RKEHMIRPSVEHY 430
            +A+ +F  M   G+ P+ ++F+ VL ACSHAGLV EGK  F  M    +  + P  EHY
Sbjct: 293 REALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHY 352

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
           ACMVDLLGR+  LEEA + I+ + +EP   +WG+LLG+C +H ++ L ++ +  L E  P
Sbjct: 353 ACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAP 412

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
                +VLL+++YAAA  WD V +V+  +   G +KV   S +E + K++ F   D+ HP
Sbjct: 413 DIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHP 472

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           Q + ++  L  +  ++++ GYVP T  V +D++ EEKE  +  HSEKLA+AFGLI    G
Sbjct: 473 QSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPG 532

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             IR+ KNLR C+DCH+F+KF+S   + EI++RD NRFHHFRNGVCSC ++W
Sbjct: 533 HPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/665 (35%), Positives = 357/665 (53%), Gaps = 76/665 (11%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           ++  LD+ +    PTQ T   +L SC    + +    VHS +   G      +   ++N+
Sbjct: 43  IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNM 102

Query: 125 Y-------------------------------SHFDSVDDARHVFDKTRRRTIYVWNALF 153
           Y                               +H   +D A  +F+    R+I  WNA+ 
Sbjct: 103 YGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMI 162

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                 G   + L+L+ RM    + +  D FT T VL AC         ++ GK++HA +
Sbjct: 163 AGYNQNGLDAKALKLFSRMLHESS-MAPDEFTITSVLSACA----NLGNVRIGKQVHAYI 217

Query: 214 LRH--GYNGIVHIMTTLIDMYARFGCVMYA----------------------GFV----- 244
           LR    YN    +   LI  YA+ G V  A                      G+V     
Sbjct: 218 LRTEMAYNS--QVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDM 275

Query: 245 ------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
                 F  M  ++VV+W+AMI  Y +NG   EA++LFR MI    +  PNS T+ +VL 
Sbjct: 276 ESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE--PNSYTLAAVLS 333

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM-DKRDVV 357
            CA+LA L+ GK IH   +R  L+    V +A++TMYAR G     + +FD +  +++ +
Sbjct: 334 VCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETI 393

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           +W S+I +   HG G +A+ +F+EM+  GV P  I++V VL ACSHAG V EGK  ++ +
Sbjct: 394 TWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQI 453

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
           + EH I P + HYACMVDLL RA    EA + I  + +EP    WGSLL +CR+H N EL
Sbjct: 454 KNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAEL 513

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
           AE A+++L  ++P N+G Y  +A+VY+A   W +  R+ +  + + ++K  G S   ++ 
Sbjct: 514 AELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRS 573

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
           K++ F + D  HPQ + ++A+   +  E+K  G+VP  + VL+D+D E KE ++  HSEK
Sbjct: 574 KIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEK 633

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AFGLI+T +  T+R+ KNLR+C DCH+  K ISK  ++EI+VRD  RFHHFR+G+CS
Sbjct: 634 LAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCS 693

Query: 658 CGDYW 662
           C DYW
Sbjct: 694 CKDYW 698



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 156/346 (45%), Gaps = 73/346 (21%)

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGR-GEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
           DAR VF +   R    W  +   L  AGR GE +  L   ++ T  G    +FT T VL 
Sbjct: 10  DARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTL---LDMTADGFTPTQFTLTNVLS 66

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           +C  +  G      G+++H+ V++ G    V +  ++++MY + G    A  VF +M V+
Sbjct: 67  SCAVTQAG----AVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVR 122

Query: 252 NV-------------------------------VSWSAMIACYARNGMAFEALELFREMI 280
           +V                               VSW+AMIA Y +NG+  +AL+LF  M+
Sbjct: 123 SVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRML 182

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
            ES  + P+  T+ SVL ACA L  +  GK +H YILR  +     V +AL++ YA+ G 
Sbjct: 183 HES-SMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGS 241

Query: 341 LELGQCVFDH---------------------------------MDKRDVVSWNSLISSYG 367
           +E  + + D                                  M+ RDVV+W ++I  Y 
Sbjct: 242 VENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYE 301

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
            +G   +AI +F+ MI  G  P+  +  +VL  C+    ++ GK +
Sbjct: 302 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQI 347



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 35/253 (13%)

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           M+A+ G +  A  VF++M  ++ VSW+ M+    R G   EA++   +M  +     P  
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADG--FTPTQ 58

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T+ +VL +CA   A   G+ +H ++++ GL S +PV ++++ MY +CG  E    VF+ 
Sbjct: 59  FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFER 118

Query: 351 MDKRDVVSWNSLIS-------------------------------SYGVHGYGGKAIQIF 379
           M  R V SWN+++S                                Y  +G   KA+++F
Sbjct: 119 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 178

Query: 380 KEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
             M++   ++P   +  SVL AC++ G V  GK +   + +  M   S    A ++    
Sbjct: 179 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNA-LISTYA 237

Query: 439 RANKLEEAAKIIE 451
           ++  +E A +I++
Sbjct: 238 KSGSVENARRIMD 250


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/625 (37%), Positives = 363/625 (58%), Gaps = 11/625 (1%)

Query: 13  LRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVL 72
           +RSP    +  H P  P S      +      +    ++K+ L +S    G    ALD++
Sbjct: 19  VRSPPSGFATIHAPAXPFSDSNDSEVEDGDAXSFCVFQDKDLLRKSQSDGGTGLYALDLI 78

Query: 73  SIEP-NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF-DQDPFLVTKLINVYSHFDS 130
                 P  + Y  LL  CT    +     VH+HL D+ F D    L   ++N+Y+    
Sbjct: 79  QRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGC 138

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           +DDAR +FD+   + +  W AL    +   R  + L L+ +M     G++ + FT + +L
Sbjct: 139 LDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQM--LRLGLQPNHFTLSSLL 196

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
           KA   S  G   L  G ++HA  L++GY   V++ + L+DMYAR G +  A   F  M  
Sbjct: 197 KAS-GSEHG---LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPT 252

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           K+ VSW+A+I+ +AR G    AL L  +M  +  +  P   T  SV  ACA++ ALEQGK
Sbjct: 253 KSEVSWNALISGHARKGEGEHALHLLWKM--QRKNFQPTHFTYSSVFSACASIGALEQGK 310

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +H ++++ GL  I  + + L+ MYA+ G ++  + VFD + K DVVSWN++++    HG
Sbjct: 311 WVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHG 370

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
            G + +  F++M+  G+ P+ ISF+ VL ACSH+GL++EG   FE M+K + + P V HY
Sbjct: 371 LGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHY 429

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
              VDLLGR   L+ A + I ++ IEP   VWG+LLG+CR+H N+EL   A++R FEL+P
Sbjct: 430 VTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDP 489

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
            ++G  +LL+++YA+A  W +V +V+++++  G++K P  S +E++  ++ FV+ DE HP
Sbjct: 490 HDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHP 549

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           Q +++      +S ++KE GYVP T  VL  +D +E+E  +  HSEKLA+AF L+NT  G
Sbjct: 550 QIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTG 609

Query: 611 ETIRITKNLRLCEDCHSFTKFISKF 635
             IRI KN+R+C DCH+  KF+SK 
Sbjct: 610 SPIRIKKNIRVCGDCHAAIKFVSKI 634


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/593 (38%), Positives = 339/593 (57%), Gaps = 46/593 (7%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           IE N  Q T+  +L +C   ++      VH  +  +GF  + F+ + L+++YS    + +
Sbjct: 236 IECN--QFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSN 293

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR + +         WN++       G GEE L L+R M+     I  D FTY  VL   
Sbjct: 294 ARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKI--DEFTYPSVLNC- 350

Query: 194 VASSCGFSL---LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
                 FS    +++   +H+ +++ G+     +   L+DMYA+ G   YA  VF +M  
Sbjct: 351 ------FSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTD 404

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREM-IMESHDLCPNSVTMVSVLQACAALAALEQG 309
           K+V+SW++++     NG   EAL LF EM IM  H   P+ + + +VL ACA L  LE G
Sbjct: 405 KDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH---PDQIVIAAVLSACAELTVLEFG 461

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           K +H   L+ GL S L V ++LV+MYA+CG +E    VFD M+ +DV++W +LI  Y  +
Sbjct: 462 KQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQN 521

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G G                              HAGLVE G+  F+SM + + I+P  EH
Sbjct: 522 GRGR----------------------------DHAGLVEHGRSYFQSMEEVYGIKPGPEH 553

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
           YACM+DLLGR+ KL EA +++  + ++P   VW +LL +CR+H NVEL ERA+  LFELE
Sbjct: 554 YACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELE 613

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFH 549
           P NA  YVLL+++Y+AA  W+E  + +RL++ RG+ K PG S IE+  K++ F+S D  H
Sbjct: 614 PKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSH 673

Query: 550 PQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSK 609
           P+  ++++ +  +   +KE GYVP     L+D+D E KE  +  HSEKLAVAFGL+    
Sbjct: 674 PRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPP 733

Query: 610 GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           G  IRI KNLR+C DCH+  K++S   ++ +++RD N FHHFR G CSC DYW
Sbjct: 734 GAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 786



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 216/451 (47%), Gaps = 37/451 (8%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF------------DQDPFLVTKL 121
           +E     H     + SC   +S SD+  V S+L+  G             D+D      +
Sbjct: 19  LEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTM 78

Query: 122 INVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
           I  Y++   +++AR +F +T  R+   W++L       G   E LEL+  M   G   R 
Sbjct: 79  IGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGE--RP 136

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
           ++FT+  VL+ C      + LL+ GK+IHA  ++  ++    ++T L+DMYA+  C++ A
Sbjct: 137 NQFTWGSVLRVCSM----YVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEA 192

Query: 242 GFVFSQMAVK-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
            ++F     K N V W+AM+  Y++NG   +A+E FR+M  E  +   N  T  S+L AC
Sbjct: 193 EYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIEC--NQFTFPSILTAC 250

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
            +++A   G  +HG I+R G  + + V SALV MY++CG L   + + + M+  D VSWN
Sbjct: 251 GSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWN 310

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           S+I      G G +A+ +F+ M    +     ++ SVL  C    +     M   S+   
Sbjct: 311 SMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLN-CFSFVMDMRNAMSVHSL--- 366

Query: 421 HMIRPSVEHYA----CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE 476
            +++   E Y      +VD+  +    + A  + E +  +     W SL+  C  + + E
Sbjct: 367 -IVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKM-TDKDVISWTSLVTGCVHNGSYE 424

Query: 477 LAER--ASKRLFELEPTNAGNYVLLADVYAA 505
            A R     R+  + P    + +++A V +A
Sbjct: 425 EALRLFCEMRIMGIHP----DQIVIAAVLSA 451



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/247 (19%), Positives = 82/247 (33%), Gaps = 71/247 (28%)

Query: 52  KNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDAL----------- 100
            N L+    K+G    A DV     +    ++  L+  C H+ S  +AL           
Sbjct: 379 NNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGI 438

Query: 101 ------------------------NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
                                    VH++   +G      +   L+++Y+    ++DA  
Sbjct: 439 HPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANK 498

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD    + +  W AL       GRG +                                
Sbjct: 499 VFDSMEIQDVITWTALIVGYAQNGRGRDHA------------------------------ 528

Query: 197 SCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVV 254
                L++HG+    S+   +G          +ID+  R G +M A  + +QMAV+ +  
Sbjct: 529 ----GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDAT 584

Query: 255 SWSAMIA 261
            W A++A
Sbjct: 585 VWKALLA 591


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/529 (40%), Positives = 328/529 (62%), Gaps = 10/529 (1%)

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R++FD+    T + +N+L RAL  AG     L +YRRM   G+  R + FT  + LKAC 
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPAAGSAP-ALAVYRRMLRAGSP-RPNSFTLAFALKACA 186

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNV 253
           A          G+++HA  LR G     ++ T L+++YA+   V  A  VF  MA  KN+
Sbjct: 187 AVPAP----GEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNL 242

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+WSAM++ Y+R GM  EAL LFREM  ++  + P+ VTMVSV+ ACA   AL+ GK +H
Sbjct: 243 VAWSAMVSGYSRVGMVNEALGLFREM--QAVGVEPDEVTMVSVISACAKAGALDLGKWVH 300

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
            YI R+G+   L + +AL+ MYA+CG +E  + VFD M ++D  +W+++I  + +HG   
Sbjct: 301 AYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVE 360

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
            A+ +F  M+   V P+ ++F+ VL AC+H+GLVE+G+  + S+ +   I+PS+E+Y CM
Sbjct: 361 DALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRR-YWSIMQNLGIKPSMENYGCM 419

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLL R+  L++A   +  + + P   +W +LL +C+    +++AE A+KRL ELEP N 
Sbjct: 420 VDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNP 479

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
            NYVLL+++YA+   WD V  ++R ++ + +  + GRS IE+   ++ FV  D+ HP+  
Sbjct: 480 ENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIR 539

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           ++  +L  ++  ++  G+ P T  VL+D+  EEKE  +  HSE+LA+A+GL+ T     I
Sbjct: 540 EIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVI 599

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+ KNLR C DCH   K ISK  N+EI+VRD  RFH F  G CSC D+W
Sbjct: 600 RVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 135/297 (45%), Gaps = 17/297 (5%)

Query: 53  NELIQSLCKQGN------LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N LI++L   G+       R+ L   S  P P   T    L +C    +  +   +H+  
Sbjct: 144 NSLIRALPAAGSAPALAVYRRMLRAGS--PRPNSFTLAFALKACAAVPAPGEGRQLHAQA 201

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK-TRRRTIYVWNALFRALTLAGRGEEV 165
              G     ++ T L+N+Y+  + V  AR VFD     + +  W+A+    +  G   E 
Sbjct: 202 LRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEA 261

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L L+R M     G+  D  T   V+ AC  +      L  GK +HA + R G    + + 
Sbjct: 262 LGLFREMQ--AVGVEPDEVTMVSVISACAKAGA----LDLGKWVHAYIDRKGITVDLELS 315

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           T LIDMYA+ G +  A  VF  M  K+  +WSAMI  +A +G+  +AL LF  M+     
Sbjct: 316 TALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRML--ELK 373

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
           + PN+VT + VL ACA    +E G+     +   G+   +     +V +  R G L+
Sbjct: 374 VRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLD 430



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 109/251 (43%), Gaps = 14/251 (5%)

Query: 55  LIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           ++    + G + +AL +     ++   P + T   ++ +C    +L     VH+++   G
Sbjct: 248 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKG 307

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              D  L T LI++Y+    ++ AR VFD    +    W+A+     + G  E+ L L+ 
Sbjct: 308 ITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFS 367

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           RM      +R +  T+  VL AC  S     L++ G+   + +   G    +     ++D
Sbjct: 368 RM--LELKVRPNNVTFIGVLSACAHS----GLVEDGRRYWSIMQNLGIKPSMENYGCMVD 421

Query: 231 MYARFGCVMYA-GFVFSQMAVKNVVSW-SAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +  R G +  A  FV       N V W + ++AC + N +        R + +E H+  P
Sbjct: 422 LLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHN--P 479

Query: 289 NSVTMVSVLQA 299
            +  ++S L A
Sbjct: 480 ENYVLLSNLYA 490


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/665 (35%), Positives = 357/665 (53%), Gaps = 76/665 (11%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           ++  LD+ +    PTQ T   +L SC    + +    VHS +   G      +   ++N+
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNM 208

Query: 125 Y-------------------------------SHFDSVDDARHVFDKTRRRTIYVWNALF 153
           Y                               +H   +D A  +F+    R+I  WNA+ 
Sbjct: 209 YGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMI 268

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                 G   + L+L+ RM    + +  D FT T VL AC         ++ GK++HA +
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHESS-MAPDEFTITSVLSACA----NLGNVRIGKQVHAYI 323

Query: 214 LRH--GYNGIVHIMTTLIDMYARFGCVMYA----------------------GFV----- 244
           LR    YN    +   LI  YA+ G V  A                      G+V     
Sbjct: 324 LRTEMAYNS--QVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDM 381

Query: 245 ------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
                 F  M  ++VV+W+AMI  Y +NG   EA++LFR MI    +  PNS T+ +VL 
Sbjct: 382 ESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE--PNSYTLAAVLS 439

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM-DKRDVV 357
            CA+LA L+ GK IH   +R  L+    V +A++TMYAR G     + +FD +  +++ +
Sbjct: 440 VCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETI 499

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           +W S+I +   HG G +A+ +F+EM+  GV P  I++V VL ACSHAG V EGK  ++ +
Sbjct: 500 TWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQI 559

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
           + EH I P + HYACMVDLL RA    EA + I  + +EP    WGSLL +CR+H N EL
Sbjct: 560 KNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAEL 619

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
           AE A+++L  ++P N+G Y  +A+VY+A   W +  R+ +  + + ++K  G S   ++ 
Sbjct: 620 AELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRS 679

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
           K++ F + D  HPQ + ++A+   +  E+K  G+VP  + VL+D+D E KE ++  HSEK
Sbjct: 680 KIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEK 739

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AFGLI+T +  T+R+ KNLR+C DCH+  K ISK  ++EI+VRD  RFHHFR+G+CS
Sbjct: 740 LAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCS 799

Query: 658 CGDYW 662
           C DYW
Sbjct: 800 CKDYW 804



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 191/439 (43%), Gaps = 80/439 (18%)

Query: 111 FDQDP------FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR-GE 163
           FD+ P      F    L+++++    + DAR VF +   R    W  +   L  AGR GE
Sbjct: 88  FDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGE 147

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
            +  L   ++ T  G    +FT T VL +C  +  G      G+++H+ V++ G    V 
Sbjct: 148 AIKTL---LDMTADGFTPTQFTLTNVLSSCAVTQAG----AVGRKVHSFVVKLGLGSCVP 200

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNV------------------------------ 253
           +  ++++MY + G    A  VF +M V++V                              
Sbjct: 201 VANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRS 260

Query: 254 -VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
            VSW+AMIA Y +NG+  +AL+LF  M+ ES  + P+  T+ SVL ACA L  +  GK +
Sbjct: 261 IVSWNAMIAGYNQNGLDAKALKLFSRMLHES-SMAPDEFTITSVLSACANLGNVRIGKQV 319

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH---------------------- 350
           H YILR  +     V +AL++ YA+ G +E  + + D                       
Sbjct: 320 HAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIG 379

Query: 351 -----------MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
                      M+ RDVV+W ++I  Y  +G   +AI +F+ MI  G  P+  +  +VL 
Sbjct: 380 DMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLS 439

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
            C+    ++ GK +     +  + R S    A ++ +  R+     A ++ + +      
Sbjct: 440 VCASLACLDYGKQIHCRAIRSLLERSSSVSNA-IITMYARSGSFPWARRMFDQVCWRKET 498

Query: 460 KVWGSLLGSCRIHCNVELA 478
             W S++ +   H   E A
Sbjct: 499 ITWTSMIVALAQHGQGEEA 517


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/585 (35%), Positives = 337/585 (57%), Gaps = 8/585 (1%)

Query: 78   PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
            P Q+TY  +L +C     L     +HS +    F  + ++ + LI++Y+    +D A  +
Sbjct: 448  PNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDI 507

Query: 138  FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
              +   + +  W  +    T     ++ L  +R+M     GIRSD    T  + AC    
Sbjct: 508  LIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM--LDRGIRSDEVGLTNAVSACA--- 562

Query: 198  CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
             G   LK G++IHA     G++  +     L+ +Y+R G +  +   F Q    + ++W+
Sbjct: 563  -GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWN 621

Query: 258  AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            A+++ + ++G   EAL +F  M  E  D   N+ T  S ++A +  A ++QGK +H  I 
Sbjct: 622  ALVSGFQQSGNNEEALRVFVRMNREGID--NNNFTFGSAVKAASETANMKQGKQVHAVIT 679

Query: 318  RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
            + G DS   V +AL++MYA+CG +   +  F  +  ++ VSWN++I++Y  HG+G +A+ 
Sbjct: 680  KTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALD 739

Query: 378  IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
             F +MI+  V P+ ++ V VL ACSH GLV++G   FESM  E+ + P  EHY C+VD+L
Sbjct: 740  SFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDML 799

Query: 438  GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
             RA  L  A + I+++ I+P   VW +LL +C +H N+E+ E A+  L ELEP ++  YV
Sbjct: 800  TRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYV 859

Query: 498  LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
            LL+++YA +  WD     ++ ++ +G++K PG+S IEVK  ++SF   D+ HP  +++H 
Sbjct: 860  LLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHE 919

Query: 558  LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
               +L+    E GYV     +L +L  E+K+ I+  HSEKLA++FGL++      I + K
Sbjct: 920  YFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMK 979

Query: 618  NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            NLR+C DCH++ KF+SK +N+EI+VRD  RFHHF  G CSC DYW
Sbjct: 980  NLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 218/462 (47%), Gaps = 42/462 (9%)

Query: 78  PTQHTYELLLLSCTHHN-SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           P   T + LL  C   N SL +   +HS +   G D +  L  KL + Y     +  A  
Sbjct: 42  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFK 101

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD+   RTI+ WN + + L       EV  L+ RM      +  +  T++ VL+AC   
Sbjct: 102 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRM--VSENVTPNEGTFSGVLEACRGG 159

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           S  F +++   +IHA +L  G      +   LID+Y+R G V  A  VF  + +K+  SW
Sbjct: 160 SVAFDVVE---QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSW 216

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
            AMI+  ++N    EA+ LF +M +    + P      SVL AC  + +LE G+ +HG +
Sbjct: 217 VAMISGLSKNECEAEAIRLFCDMYVLG--IMPTPYAFSSVLSACKKIESLEIGEQLHGLV 274

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           L+ G  S   V +ALV++Y   G L   + +F +M +RD V++N+LI+     GYG KA+
Sbjct: 275 LKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAM 334

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML--------FESMRK--------- 419
           ++FK M   G+ P   +  S++ ACS  G +  G+ L        F S  K         
Sbjct: 335 ELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLY 394

Query: 420 ----------EHMIRPSVEH---YACMVDLLGRANKLEEAAKIIEDLRIE---PGPKVWG 463
                     ++ +   VE+   +  M+   G  + L  + +I   ++IE   P    + 
Sbjct: 395 AKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYP 454

Query: 464 SLLGSCRIHCNVELAERASKRLFELE-PTNAGNYVLLADVYA 504
           S+L +C    ++EL E+   ++ +     NA    +L D+YA
Sbjct: 455 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYA 496



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 121/462 (26%), Positives = 216/462 (46%), Gaps = 18/462 (3%)

Query: 47  LSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           +S  +KNE     C+   +R   D+  +   PT + +  +L +C    SL     +H  +
Sbjct: 220 ISGLSKNE-----CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLV 274

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
              GF  D ++   L+++Y H  ++  A H+F    +R    +N L   L+  G GE+ +
Sbjct: 275 LKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAM 334

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++RM+  G  +  D  T   ++ AC A    F     G+++HA   + G+     I  
Sbjct: 335 ELFKRMHLDG--LEPDSNTLASLVVACSADGTLF----RGQQLHAYTTKLGFASNNKIEG 388

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+++YA+   +  A   F +  V+NVV W+ M+  Y        +  +FR+M +E  ++
Sbjct: 389 ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIE--EI 446

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            PN  T  S+L+ C  L  LE G+ IH  I++        V S L+ MYA+ GKL+    
Sbjct: 447 VPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWD 506

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +      +DVVSW ++I+ Y  + +  KA+  F++M+  G+    +   + + AC+    
Sbjct: 507 ILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQA 566

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV-WGSL 465
           ++EG+ +  +          +     +V L  R  K+EE+    E  + E G  + W +L
Sbjct: 567 LKEGQQI-HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFE--QTEAGDNIAWNAL 623

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507
           +   +   N E A R   R+   E  +  N+   + V AA++
Sbjct: 624 VSGFQQSGNNEEALRVFVRM-NREGIDNNNFTFGSAVKAASE 664


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/552 (38%), Positives = 333/552 (60%), Gaps = 9/552 (1%)

Query: 113 QDPFLVTKLINV--YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           ++ F  + L+     S + S+D A  +F +  +   + +N + R        E  L LY 
Sbjct: 15  ENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYY 74

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M     G+ SD FTY  + KAC +       ++ G +IH  + + G  G + +  +LI+
Sbjct: 75  EM--LERGVESDNFTYPALFKACAS----LRSIEEGMQIHGYIFKRGLEGDLFVQNSLIN 128

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MY + G +  +  VF  M  ++V SWSA+IA +A  GM  E L +F EM  E     P  
Sbjct: 129 MYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREG-SCRPEE 187

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
             +VSVL AC  L AL+ G+  H  +LR   +  + V ++L+ MY +CG +E G  +F  
Sbjct: 188 SILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQR 247

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M K++ +S++ +I+   +HG G +A+Q+F +M+  G+ P  + ++ VL AC+HAGLV+EG
Sbjct: 248 MVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEG 307

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
              F  M+ EH I P+++HY C+V L+GRA  L +A + I  + I+P   VW  LL +C+
Sbjct: 308 LQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACK 367

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
            H N+E+ E A+K L EL  +N G+YV+L+++YA A  W++V +++  +  +G  + PG 
Sbjct: 368 FHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGF 427

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S ++V+RK+Y FVS D  HPQ + ++ ++  +  ++K +GY P T  VL+D+D EEK + 
Sbjct: 428 SLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQR 487

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +  HS+KLA+AF LI+TS+G  IRI +NLR+C DCH++TK IS    +EI VRD NRFHH
Sbjct: 488 LKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHH 547

Query: 651 FRNGVCSCGDYW 662
           F++G CSC DYW
Sbjct: 548 FKDGTCSCRDYW 559



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 174/402 (43%), Gaps = 48/402 (11%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+      N+  AL    ++L         TY  L  +C    S+ + + +H ++  
Sbjct: 54  NTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFK 113

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G + D F+   LIN+Y     ++ +  VF+   RR +  W+A+  A    G   E L +
Sbjct: 114 RGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSV 173

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M+  G+  R +      VL AC         L  G+  H ++LR+     V + T+L
Sbjct: 174 FGEMSREGS-CRPEESILVSVLSACTH----LGALDLGRCTHVTLLRNIREMNVIVQTSL 228

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY + GC+     +F +M  KN +S+S MI   A +G   EAL++F +M+ E   L P
Sbjct: 229 IDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEG--LKP 286

Query: 289 NSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           + V  + VL AC     +++G +  +   L  G++  +     +V +  R G L      
Sbjct: 287 DDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGML------ 340

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
                                     KA++  + M    + P+ + +  +L AC     +
Sbjct: 341 -------------------------NKALEHIRSM---PIKPNEVVWRGLLSACKFHHNL 372

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
           E G++  +S+ + +   P    Y  + ++  RA + E+ AKI
Sbjct: 373 EIGEIAAKSLGELNSSNPG--DYVVLSNMYARAKRWEDVAKI 412


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/598 (37%), Positives = 358/598 (59%), Gaps = 22/598 (3%)

Query: 76  PNPT-QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           PNP+  H    LL  C    +L     VH+H+   G     + +++++ + S       A
Sbjct: 4   PNPSSNHPTLQLLEKC---KTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTI-VFTHA 59

Query: 135 RHVFDKTRRRTIYVWNALFRAL-TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
             +F+     TI+++N L  +L  +         LY R+  T T ++ + FT+  + KAC
Sbjct: 60  LSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVL-THTTLKPNGFTFPSLFKAC 118

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGI-VHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
            +       L+HG+ +H  VL+         +   L++ YA+ G V    ++F+Q++  +
Sbjct: 119 GSQP----WLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPD 174

Query: 253 VVSWSAMIACYARNG--------MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           + SW+++++ Y  N         ++ E L LF EM  +   +  N VT+V+++ ACA L 
Sbjct: 175 LASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEM--QKSLIKANEVTLVALISACAELG 232

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           AL QG   H Y+L+  L     V +AL+ MY++CG L+L   +FD +  RD + +N++I 
Sbjct: 233 ALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIG 292

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
            + +HGYG +A+ +FK+M   G++P  ++ V  + +CSH GLVEEG  +FESM++ + + 
Sbjct: 293 GFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVE 352

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484
           P +EHY C+VDLLGRA +L EA + + ++ ++P   +W SLLG+ R+H N+E+ E   K 
Sbjct: 353 PKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKH 412

Query: 485 LFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS 544
           L +LEP  +GNYVLL+++YA+ + WD+VKRV++L++  G+ KVPG S +EV   M+ F+ 
Sbjct: 413 LIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLM 472

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604
            D+ HP+ ++++  L  +S  + E G+ P+T  VL+D++ EEKE  +  HSE+LA+AF L
Sbjct: 473 GDKTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFAL 532

Query: 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I +     IRI KNLR+C DCH+ +K ISK   +EI+VRD NRFHHF+ G CSC DYW
Sbjct: 533 IASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/565 (39%), Positives = 342/565 (60%), Gaps = 20/565 (3%)

Query: 109 NGFDQDPFLVTKLINVYSHFDS-----VDDARHVFDKTRRRTIYVW-NALFRALTLAGR- 161
            G    P  VT+L+ + +   +     +  AR VFD+       VW N L R     G  
Sbjct: 56  GGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWG 115

Query: 162 ---GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
               EE   ++ RM     G+  D +T+  +LKAC ++  G    + G++ H   ++ G 
Sbjct: 116 GGCAEEAARVFVRM--MEEGVAPDTYTFVSLLKACASARAG----EEGRQAHGVAVKAGA 169

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
               ++  TLI+MYA  G V  A  +F +M  + VVS++AMI    R+ +  EAL LFRE
Sbjct: 170 AEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFRE 229

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M  ++  L P SVT++SVL ACA L ALE G+ IH YI +  LDS++ V +AL+ MYA+C
Sbjct: 230 M--QAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKC 287

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G LE    VF  M+ RD  +W+ ++ +Y  HGYG +AI +F+EM   G+ P  ++F+ VL
Sbjct: 288 GSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVL 347

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSH+G+V EG   F+SMR E+ I   ++HY C+ DLL R+ +LE A K I++L I+P 
Sbjct: 348 YACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPT 406

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             +W +LL +C  H +V++ +R  +R+ EL+ ++ G+YV+ +++ A    W+E+  V++L
Sbjct: 407 AILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKL 466

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
           +  +G+ KVPG S IE+   ++ F + D  HP  ++   ++  +  ++K  GYVP T  V
Sbjct: 467 MSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHV 526

Query: 579 LY-DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
            + ++  EEK   +  HSEKLA++FGL+NT+ G T+RI KNLR+C DCHS  K +S   N
Sbjct: 527 FHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFN 586

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           + I++RD+NRFHHF +GVCSCGDYW
Sbjct: 587 RRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/588 (37%), Positives = 358/588 (60%), Gaps = 10/588 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP---FLVTKLINVYSHFDSVDDA 134
           P   T   LL     H +L    ++H++      +Q+     + T L+++Y+    +  A
Sbjct: 200 PNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYA 259

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
             VF     R    W+AL     L  R  E   L++ M   G    S   +    L+ C 
Sbjct: 260 CRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSAT-SVASALRVCA 318

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
           +     + L  G ++HA + + G +  +    +L+ MYA+ G +  A   F ++AVK+ +
Sbjct: 319 S----LADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTI 374

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           S+ A+++   +NG A EA  +F++M  ++ ++ P+  TMVS++ AC+ LAAL+ GK  HG
Sbjct: 375 SYGALLSGCVQNGKAEEAFLVFKKM--QACNMEPDIATMVSLIPACSHLAALQHGKCSHG 432

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            ++ RGL     + ++L+ MYA+CGK++L + VFD M  RDVVSWN++I+ YG+HG G +
Sbjct: 433 SVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKE 492

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A  +F  M   G +P  ++F+ ++ ACSH+GLV EGK  F++M  ++ I P +EHY CMV
Sbjct: 493 ATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMV 552

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           DLL R   L+EA + I+ + ++   +VWG+LLG+CRIH N++L ++ S+ + +L P   G
Sbjct: 553 DLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTG 612

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
           N+VLL+++++AA  +DE   V+ + + +G +K PG S IE+   +++FV  D+ HP    
Sbjct: 613 NFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRD 672

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
           ++  L N+  ++K+ GY   T  VL DL+ EEKE+ +L HSEKLA+AFG+++ ++ +TI 
Sbjct: 673 IYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIF 732

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +TKNLR+C DCH+  K+++   N+ I+VRD NRFHHF+NG CSCG++W
Sbjct: 733 VTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/437 (28%), Positives = 206/437 (47%), Gaps = 27/437 (6%)

Query: 49  SRNKNELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHS 104
           +R  N LI++    G    A+D+    L     P ++T+  +L +C+    L     +H+
Sbjct: 65  ARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHA 124

Query: 105 HLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
           H    G   D F+ T LI++Y        AR+VF K   R +  WNA+       G    
Sbjct: 125 HAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHH 184

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR---HGYNGI 221
            +     M   G G+R +  T   +L         F     G  IHA  LR         
Sbjct: 185 AIAHLLDMQDHG-GLRPNASTLVSLLPLLAQHGALF----QGTSIHAYCLRACLEQNEEQ 239

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V I T L+DMYA+   ++YA  VF  M V+N V+WSA+I  +       EA  LF++M++
Sbjct: 240 VLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLV 299

Query: 282 ESHDLCPNSVTMV-SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           E   LC  S T V S L+ CA+LA L  G  +H  I + G+ + L   ++L++MYA+ G 
Sbjct: 300 EG--LCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGL 357

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +      FD +  +D +S+ +L+S    +G   +A  +FK+M    + P   + VS++ A
Sbjct: 358 INEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPA 417

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRP-SVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEP 457
           CSH   ++ GK    S+    +IR  ++E   C  ++D+  +  K++ + ++ + +   P
Sbjct: 418 CSHLAALQHGKCSHGSV----IIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKM---P 470

Query: 458 GPKV--WGSLLGSCRIH 472
              V  W +++    IH
Sbjct: 471 ARDVVSWNTMIAGYGIH 487



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 170/340 (50%), Gaps = 13/340 (3%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR VFD+        +NAL RA +  G     ++LYR M      +  +++T+ +VLKAC
Sbjct: 53  ARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM--LRFRVAPNKYTFPFVLKAC 110

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
            A       L+ G+ IHA     G +  + + T LID+Y R      A  VF++M +++V
Sbjct: 111 SA----LVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDV 166

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+AM+A YA +GM   A+    +M  +   L PN+ T+VS+L   A   AL QG  IH
Sbjct: 167 VAWNAMLAGYANHGMYHHAIAHLLDM-QDHGGLRPNASTLVSLLPLLAQHGALFQGTSIH 225

Query: 314 GYILRRGLDS---ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            Y LR  L+     + + +AL+ MYA+C +L     VF  M  R+ V+W++LI  + +  
Sbjct: 226 AYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCD 285

Query: 371 YGGKAIQIFKEMIYHGVS-PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
              +A  +FK+M+  G+   S  S  S L  C+    +  G  L   + K   I   +  
Sbjct: 286 RMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSG-IHADLTA 344

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
              ++ +  +A  + EA    +++ ++     +G+LL  C
Sbjct: 345 SNSLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGC 383



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 117/240 (48%), Gaps = 16/240 (6%)

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G +  A  VF ++   +  +++A+I  Y+  G    A++L+R M+     + PN  T   
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSML--RFRVAPNKYTFPF 105

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           VL+AC+AL  L  G+ IH +    GL + L V +AL+ +Y RC +    + VF  M  RD
Sbjct: 106 VLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRD 165

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           VV+WN++++ Y  HG    AI    +M  H G+ P+  + VS+L   +  G + +G  + 
Sbjct: 166 VVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSI- 224

Query: 415 ESMRKEHMIRPSVEHY-------ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
                 + +R  +E           ++D+  +  +L  A ++   + +      W +L+G
Sbjct: 225 ----HAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR-NDVTWSALIG 279


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/588 (37%), Positives = 358/588 (60%), Gaps = 10/588 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP---FLVTKLINVYSHFDSVDDA 134
           P   T   LL     H +L    ++H++      +Q+     + T L+++Y+    +  A
Sbjct: 200 PNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYA 259

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
             VF     R    W+AL     L  R  E   L++ M   G    S   +    L+ C 
Sbjct: 260 CRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSAT-SVASALRVCA 318

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
           +     + L  G ++HA + + G +  +    +L+ MYA+ G +  A   F ++AVK+ +
Sbjct: 319 S----LADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTI 374

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           S+ A+++   +NG A EA  +F++M  ++ ++ P+  TMVS++ AC+ LAAL+ GK  HG
Sbjct: 375 SYGALLSGCVQNGKAEEAFLVFKKM--QACNMEPDIATMVSLIPACSHLAALQHGKCSHG 432

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            ++ RGL     + ++L+ MYA+CGK++L + VFD M  RDVVSWN++I+ YG+HG G +
Sbjct: 433 SVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKE 492

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A  +F  M   G +P  ++F+ ++ ACSH+GLV EGK  F++M  ++ I P +EHY CMV
Sbjct: 493 ATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMV 552

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           DLL R   L+EA + I+ + ++   +VWG+LLG+CRIH N++L ++ S+ + +L P   G
Sbjct: 553 DLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTG 612

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
           N+VLL+++++AA  +DE   V+ + + +G +K PG S IE+   +++FV  D+ HP    
Sbjct: 613 NFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRD 672

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
           ++  L N+  ++K+ GY   T  VL DL+ EEKE+ +L HSEKLA+AFG+++ ++ +TI 
Sbjct: 673 IYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIF 732

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +TKNLR+C DCH+  K+++   N+ I+VRD NRFHHF+NG CSCG++W
Sbjct: 733 VTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/437 (28%), Positives = 206/437 (47%), Gaps = 27/437 (6%)

Query: 49  SRNKNELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHS 104
           +R  N LI++    G    A+D+    L     P ++T+  +L +C+    L     +H+
Sbjct: 65  ARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHA 124

Query: 105 HLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
           H    G   D F+ T LI++Y        AR+VF K   R +  WNA+       G    
Sbjct: 125 HAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHH 184

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR---HGYNGI 221
            +     M   G G+R +  T   +L         F     G  IHA  LR         
Sbjct: 185 AIAHLLDMQDHG-GLRPNASTLVSLLPLLAQHGALF----QGTSIHAYCLRACLEQNEEQ 239

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V I T L+DMYA+   ++YA  VF  M V+N V+WSA+I  +       EA  LF++M++
Sbjct: 240 VLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLV 299

Query: 282 ESHDLCPNSVTMV-SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           E   LC  S T V S L+ CA+LA L  G  +H  I + G+ + L   ++L++MYA+ G 
Sbjct: 300 EG--LCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGL 357

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +      FD +  +D +S+ +L+S    +G   +A  +FK+M    + P   + VS++ A
Sbjct: 358 INEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPA 417

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRP-SVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEP 457
           CSH   ++ GK    S+    +IR  ++E   C  ++D+  +  K++ + ++ + +   P
Sbjct: 418 CSHLAALQHGKCSHGSV----IIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKM---P 470

Query: 458 GPKV--WGSLLGSCRIH 472
              V  W +++    IH
Sbjct: 471 ARDVVSWNTMIAGYGIH 487



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 170/340 (50%), Gaps = 13/340 (3%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR VFD+        +NAL RA +  G     ++LYR M      +  +++T+ +VLKAC
Sbjct: 53  ARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM--LRFRVAPNKYTFPFVLKAC 110

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
            A       L+ G+ IHA     G +  + + T LID+Y R      A  VF++M +++V
Sbjct: 111 SA----LVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDV 166

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+AM+A YA +GM   A+    +M  +   L PN+ T+VS+L   A   AL QG  IH
Sbjct: 167 VAWNAMLAGYANHGMYHHAIAHLLDM-QDHGGLRPNASTLVSLLPLLAQHGALFQGTSIH 225

Query: 314 GYILRRGLDS---ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            Y LR  L+     + + +AL+ MYA+C +L     VF  M  R+ V+W++LI  + +  
Sbjct: 226 AYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCD 285

Query: 371 YGGKAIQIFKEMIYHGVS-PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
              +A  +FK+M+  G+   S  S  S L  C+    +  G  L   + K   I   +  
Sbjct: 286 RMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSG-IHADLTA 344

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
              ++ +  +A  + EA    +++ ++     +G+LL  C
Sbjct: 345 SNSLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGC 383



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 117/240 (48%), Gaps = 16/240 (6%)

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G +  A  VF ++   +  +++A+I  Y+  G    A++L+R M+     + PN  T   
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSML--RFRVAPNKYTFPF 105

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           VL+AC+AL  L  G+ IH +    GL + L V +AL+ +Y RC +    + VF  M  RD
Sbjct: 106 VLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRD 165

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           VV+WN++++ Y  HG    AI    +M  H G+ P+  + VS+L   +  G + +G  + 
Sbjct: 166 VVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSI- 224

Query: 415 ESMRKEHMIRPSVEHY-------ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
                 + +R  +E           ++D+  +  +L  A ++   + +      W +L+G
Sbjct: 225 ----HAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR-NDVTWSALIG 279


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/616 (35%), Positives = 361/616 (58%), Gaps = 16/616 (2%)

Query: 53  NELIQSLCKQGNLRQA----LDVLSIEPNPTQHTYELLLLSCTH-HNSLSDALNVHSHLT 107
           N +I  + + G   +A    + +L     P Q+T   +L + +     LS +  VH H  
Sbjct: 385 NSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAI 444

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
                 D F+ T LI+ YS    + +A  +F++     +  WNA+    T +  G + L+
Sbjct: 445 KINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLK 503

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL-LKHGKEIHASVLRHGYNGIVHIMT 226
           L+  M+  G   RSD FT   V K     +CGF   +  GK++HA  ++ GY+  + + +
Sbjct: 504 LFALMHKQGE--RSDDFTLATVFK-----TCGFLFAINQGKQVHAYAIKSGYDLDLWVSS 556

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            ++DMY + G +  A F F  + V + V+W+ MI+    NG    A  +F +M +    +
Sbjct: 557 GILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMG--V 614

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+  T+ ++ +A + L ALEQG+ IH   L+    +   V ++LV MYA+CG ++   C
Sbjct: 615 LPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYC 674

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +F  ++  ++ +WN+++     HG G + +Q+FK+M   G+ P  ++F+ VL ACSH+GL
Sbjct: 675 LFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGL 734

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V E      SM  ++ I+P +EHY+C+ D LGRA  +++A  +IE + +E    ++ +LL
Sbjct: 735 VSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLL 794

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +CR+  + E  +R + +L ELEP ++  YVLL+++YAAA  WDE+K  + +++   ++K
Sbjct: 795 AACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKK 854

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S IEVK K++ FV  D  + Q E ++  + ++  ++K++GYVP+T   L D++ EE
Sbjct: 855 DPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEE 914

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KER +  HSEKLAVAFGL++T     IR+ KNLR+C DCH+  K+I+K  N+EI++RD N
Sbjct: 915 KERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDAN 974

Query: 647 RFHHFRNGVCSCGDYW 662
           RFH F++G+CSCGDYW
Sbjct: 975 RFHRFKDGICSCGDYW 990



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 202/432 (46%), Gaps = 16/432 (3%)

Query: 39  NSSTTPTSLSSRNK--NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSL 96
           N +++ + +  RNK  +E + S      L+   D++  +    Q T+ L+L +    +SL
Sbjct: 272 NDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSL 331

Query: 97  SDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL 156
           +    VH      G D    +   LIN+Y        AR VFD    R +  WN++   +
Sbjct: 332 ALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGI 391

Query: 157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
              G   E + L+  M     G++ D++T T VLKA  +   G SL    K++H   ++ 
Sbjct: 392 AQNGLEVEAVCLF--MQLLRCGLKPDQYTMTSVLKAASSLPEGLSL---SKQVHVHAIKI 446

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
                  + T LID Y+R  C+  A  +F +    ++V+W+AM+A Y ++    + L+LF
Sbjct: 447 NNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLF 505

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
              +M       +  T+ +V + C  L A+ QGK +H Y ++ G D  L V S ++ MY 
Sbjct: 506 --ALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYV 563

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CG +   Q  FD +   D V+W ++IS    +G   +A  +F +M   GV P   +  +
Sbjct: 564 KCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIAT 623

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIR-PSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
           +  A S    +E+G+ +  +  K +    P V     +VD+  +   +++A  + +  RI
Sbjct: 624 LAKASSCLTALEQGRQIHANALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFK--RI 679

Query: 456 E-PGPKVWGSLL 466
           E      W ++L
Sbjct: 680 EMMNITAWNAML 691



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 153/349 (43%), Gaps = 44/349 (12%)

Query: 58  SLCKQGNLRQALDVLSIEPNPTQHTYEL----LLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           S C   N++QA  +  I      +T  +    +L  C H   +  + + H +    G D 
Sbjct: 119 SECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDG 178

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           D F+   L+N+Y  F  V + + +F++   R + +WN + +A    G  EE ++L    +
Sbjct: 179 DEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFH 238

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
              +G+  +  T   + +              G +  A  ++   NG             
Sbjct: 239 --SSGLNPNEITLRLLARI------------SGDDSDAGQVKSFANG------------- 271

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
                          +V  ++  +  ++ Y  +G     L+ F +M+ ES   C + VT 
Sbjct: 272 -----------NDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMV-ESDVEC-DQVTF 318

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
           + +L     + +L  G+ +H   L+ GLD +L V ++L+ MY +  K    + VFD+M +
Sbjct: 319 ILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSE 378

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
           RD++SWNS+I+    +G   +A+ +F +++  G+ P   +  SVL A S
Sbjct: 379 RDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 10/211 (4%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK  HA +L    N    ++  LI MY++ G + YA  VF +M  +++VSW++++A YA+
Sbjct: 58  GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117

Query: 266 NGMAF-----EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           +         +A  LFR  I+    +  + +T+  +L+ C     +   +  HGY  + G
Sbjct: 118 SSECVVENIQQAFLLFR--ILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIG 175

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           LD    V  ALV +Y + GK++ G+ +F+ M  RDVV WN ++ +Y   G+  +AI +  
Sbjct: 176 LDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSS 235

Query: 381 EMIYHGVSPSPIS---FVSVLGACSHAGLVE 408
                G++P+ I+      + G  S AG V+
Sbjct: 236 AFHSSGLNPNEITLRLLARISGDDSDAGQVK 266



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 28/217 (12%)

Query: 84  ELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP--FLVTKLINVYSHFDSVDDARHVFDKT 141
           +L+L  CTH   L+             F+++P  FL+  LI++YS   S+  AR VFDK 
Sbjct: 54  DLMLGKCTHARILT-------------FEENPERFLINNLISMYSKCGSLTYARRVFDKM 100

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSD-----RFTYTYVLKACVAS 196
             R +  WN++  A   A   E V+E  ++       +R D     R T + +LK C+ S
Sbjct: 101 PDRDLVSWNSILAA--YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHS 158

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
              ++     +  H    + G +G   +   L+++Y +FG V     +F +M  ++VV W
Sbjct: 159 GYVWA----SESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLW 214

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + M+  Y   G   EA++L       S  L PN +T+
Sbjct: 215 NLMLKAYLEMGFKEEAIDL--SSAFHSSGLNPNEITL 249


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/608 (36%), Positives = 350/608 (57%), Gaps = 47/608 (7%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           L + C    +  DA  V   + D    +D    T ++  Y     V+ AR VF++   + 
Sbjct: 207 LYMKCDTPEASWDARKVLDEMPD----KDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKF 262

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
             VWNA+      +G   +  EL+RRM      +  D FT+T VL AC  ++ GF +  H
Sbjct: 263 DVVWNAMISGYVQSGMCADAFELFRRM--VSEKVPLDEFTFTSVLSAC--ANAGFFV--H 316

Query: 206 GKEIHASVLRHGYNGI----VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA--- 258
           GK +H  ++R   N +    + +   L+ +Y++ G ++ A  +F  M +K+VVSW+    
Sbjct: 317 GKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILS 376

Query: 259 ----------------------------MIACYARNGMAFEALELFREMIMESHDLCPNS 290
                                       M++ Y   G++ +AL+LF +M  E  D+ P  
Sbjct: 377 GYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAE--DVKPCD 434

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T    + AC  L AL+ G+ +H ++++ G ++     +AL+TMYA+CG +   + VF  
Sbjct: 435 YTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLV 494

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M   D VSWN++IS+ G HG+G +A+++F +M+  G+ P  ISF+++L AC+HAGLV+EG
Sbjct: 495 MPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEG 554

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
              FESM+++  I P  +HYA ++DLLGR+ ++ EA  +I+ +  EP P +W ++L  CR
Sbjct: 555 FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCR 614

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
            + ++E    A+ +LF + P + G Y+LL++ Y+AA  W +  RV++L+  RG++K PG 
Sbjct: 615 TNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGC 674

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S IEV  K++ F+  D  HP+ ++++  L  + A M++ GYVP TK VL+D++  EKE I
Sbjct: 675 SWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYI 734

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +  HSEKLAV FGL+    G T+ + KNLR+C DCH+   F+SK   +EI+VRDV RFHH
Sbjct: 735 LFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHH 794

Query: 651 FRNGVCSC 658
           F++G CSC
Sbjct: 795 FKDGECSC 802



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 172/375 (45%), Gaps = 50/375 (13%)

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKT--RRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           P   T L+   +    + DA   FD     RR   + NA+  A   A      + ++  +
Sbjct: 92  PSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHAL 151

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
            G+G+ +R D +++T ++ A V      +   H  ++H SVL+ G   ++ +   LI +Y
Sbjct: 152 LGSGS-LRPDDYSFTALISA-VGQMHNLAA-PHCTQLHCSVLKSGAAAVLSVSNALIALY 208

Query: 233 ARFG---CVMYAGFVFSQMAVKNVVSWSAMIACYAR------------------------ 265
            +         A  V  +M  K+ ++W+ M+  Y R                        
Sbjct: 209 MKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNA 268

Query: 266 -------NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
                  +GM  +A ELFR M+ E   L  +  T  SVL ACA       GK +HG I+R
Sbjct: 269 MISGYVQSGMCADAFELFRRMVSEKVPL--DEFTFTSVLSACANAGFFVHGKSVHGQIIR 326

Query: 319 RGLDSI----LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
              + +    LPV +ALVT+Y++ GK+ + + +FD M+ +DVVSWN+++S Y   G   K
Sbjct: 327 LQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDK 386

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A+++FK M Y     + +S++ ++    H GL E+   LF  MR E  ++P    YA  +
Sbjct: 387 AVEVFKVMPYK----NDLSWMVMVSGYVHGGLSEDALKLFNQMRAED-VKPCDYTYAGAI 441

Query: 435 DLLGRANKLEEAAKI 449
              G    L+   ++
Sbjct: 442 AACGELGALKHGRQL 456



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 94/214 (43%), Gaps = 14/214 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +TY   + +C    +L     +H+HL   GF+        L+ +Y+   +V+DAR V
Sbjct: 432 PCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLV 491

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F          WNA+  AL   G G E LEL+ +M     GI  DR ++  +L AC  + 
Sbjct: 492 FLVMPNLDSVSWNAMISALGQHGHGREALELFDQM--VAEGIDPDRISFLTILTACNHA- 548

Query: 198 CGFSLLKHGKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS- 255
               L+  G     S+ R  G +        LID+  R G +  A  +   M  +   S 
Sbjct: 549 ---GLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSI 605

Query: 256 WSAMIACYARNG----MAFEALELFREMIMESHD 285
           W A+++    NG     A+ A +LFR  ++  HD
Sbjct: 606 WEAILSGCRTNGDMEFGAYAADQLFR--MIPQHD 637


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/585 (35%), Positives = 337/585 (57%), Gaps = 8/585 (1%)

Query: 78   PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
            P Q+TY  +L +C     L     +HS +    F  + ++ + LI++Y+    +D A  +
Sbjct: 488  PNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDI 547

Query: 138  FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
              +   + +  W  +    T     ++ L  +R+M     GIRSD    T  + AC    
Sbjct: 548  LIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM--LDRGIRSDEVGLTNAVSACA--- 602

Query: 198  CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
             G   LK G++IHA     G++  +     L+ +Y+R G +  +   F Q    + ++W+
Sbjct: 603  -GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWN 661

Query: 258  AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            A+++ + ++G   EAL +F  M  E  D   N+ T  S ++A +  A ++QGK +H  I 
Sbjct: 662  ALVSGFQQSGNNEEALRVFVRMNREGID--NNNFTFGSAVKAASETANMKQGKQVHAVIT 719

Query: 318  RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
            + G DS   V +AL++MYA+CG +   +  F  +  ++ VSWN++I++Y  HG+G +A+ 
Sbjct: 720  KTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALD 779

Query: 378  IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
             F +MI+  V P+ ++ V VL ACSH GLV++G   FESM  E+ + P  EHY C+VD+L
Sbjct: 780  SFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDML 839

Query: 438  GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
             RA  L  A + I+++ I+P   VW +LL +C +H N+E+ E A+  L ELEP ++  YV
Sbjct: 840  TRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYV 899

Query: 498  LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
            LL+++YA +  WD     ++ ++ +G++K PG+S IEVK  ++SF   D+ HP  +++H 
Sbjct: 900  LLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHE 959

Query: 558  LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
               +L+    E GYV     +L +L  E+K+ I+  HSEKLA++FGL++      I + K
Sbjct: 960  YFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMK 1019

Query: 618  NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            NLR+C DCH++ KF+SK +N+EI+VRD  RFHHF  G CSC DYW
Sbjct: 1020 NLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 218/462 (47%), Gaps = 42/462 (9%)

Query: 78  PTQHTYELLLLSCTHHN-SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           P   T + LL  C   N SL +   +HS +   G D +  L  KL + Y     +  A  
Sbjct: 82  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFK 141

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD+   RTI+ WN + + L       EV  L+ RM      +  +  T++ VL+AC   
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRM--VSENVTPNEGTFSGVLEACRGG 199

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           S  F +++   +IHA +L  G      +   LID+Y+R G V  A  VF  + +K+  SW
Sbjct: 200 SVAFDVVE---QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSW 256

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
            AMI+  ++N    EA+ LF +M +    + P      SVL AC  + +LE G+ +HG +
Sbjct: 257 VAMISGLSKNECEAEAIRLFCDMYVLG--IMPTPYAFSSVLSACKKIESLEIGEQLHGLV 314

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           L+ G  S   V +ALV++Y   G L   + +F +M +RD V++N+LI+     GYG KA+
Sbjct: 315 LKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAM 374

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML--------FESMRK--------- 419
           ++FK M   G+ P   +  S++ ACS  G +  G+ L        F S  K         
Sbjct: 375 ELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLY 434

Query: 420 ----------EHMIRPSVEH---YACMVDLLGRANKLEEAAKIIEDLRIE---PGPKVWG 463
                     ++ +   VE+   +  M+   G  + L  + +I   ++IE   P    + 
Sbjct: 435 AKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYP 494

Query: 464 SLLGSCRIHCNVELAERASKRLFELE-PTNAGNYVLLADVYA 504
           S+L +C    ++EL E+   ++ +     NA    +L D+YA
Sbjct: 495 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYA 536



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 121/462 (26%), Positives = 216/462 (46%), Gaps = 18/462 (3%)

Query: 47  LSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           +S  +KNE     C+   +R   D+  +   PT + +  +L +C    SL     +H  +
Sbjct: 260 ISGLSKNE-----CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLV 314

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
              GF  D ++   L+++Y H  ++  A H+F    +R    +N L   L+  G GE+ +
Sbjct: 315 LKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAM 374

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++RM+  G  +  D  T   ++ AC A    F     G+++HA   + G+     I  
Sbjct: 375 ELFKRMHLDG--LEPDSNTLASLVVACSADGTLF----RGQQLHAYTTKLGFASNNKIEG 428

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+++YA+   +  A   F +  V+NVV W+ M+  Y        +  +FR+M +E  ++
Sbjct: 429 ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIE--EI 486

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            PN  T  S+L+ C  L  LE G+ IH  I++        V S L+ MYA+ GKL+    
Sbjct: 487 VPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWD 546

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +      +DVVSW ++I+ Y  + +  KA+  F++M+  G+    +   + + AC+    
Sbjct: 547 ILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQA 606

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV-WGSL 465
           ++EG+ +  +          +     +V L  R  K+EE+    E  + E G  + W +L
Sbjct: 607 LKEGQQI-HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFE--QTEAGDNIAWNAL 663

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507
           +   +   N E A R   R+   E  +  N+   + V AA++
Sbjct: 664 VSGFQQSGNNEEALRVFVRM-NREGIDNNNFTFGSAVKAASE 704


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/629 (36%), Positives = 349/629 (55%), Gaps = 27/629 (4%)

Query: 53   NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
            N L+ + CK G L  A  V     +    TY  +++ C+     + AL + + +   G+ 
Sbjct: 388  NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYS 447

Query: 113  QDP-------------------FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
            + P                   F+   L++ YS  D +DD R +FD+   R    +N + 
Sbjct: 448  RHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVII 507

Query: 154  RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
             A         VL L+R M   G     DR    Y     VA S     +  GK+IHA +
Sbjct: 508  AAYAWNQCAATVLRLFREMQKLGF----DRQVLPYATMLSVAGS--LPDVHIGKQIHAQL 561

Query: 214  LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
            +  G      +   LIDMY++ G +  A   FS  + K+ +SW+A+I  Y +NG   EAL
Sbjct: 562  VLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEAL 621

Query: 274  ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
            +LF +M      L P+  T  S+++A ++LA +  G+ +H Y++R G  S +   S LV 
Sbjct: 622  QLFSDM--RRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVD 679

Query: 334  MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
            MYA+CG L+     FD M +R+ +SWN++IS+Y  +G    AI++F+ M++ G +P  ++
Sbjct: 680  MYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVT 739

Query: 394  FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            F+SVL ACSH GL +E    F  M+ ++ I P  EHYAC++D LGR     +  K++ ++
Sbjct: 740  FLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEM 799

Query: 454  RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
              +  P +W S+L SCRIH N ELA  A+ +LF +EPT+A  YV+L+++YA A  W++  
Sbjct: 800  PFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAA 859

Query: 514  RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
             VK+++  RG++K  G S +E+K+K+YSF S D   P  +++   L  L  EM ++GY P
Sbjct: 860  CVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKP 919

Query: 574  QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
                 L+ +D E K   +  HSE+LA+AF L+NT  G  IRI KNL  C DCH+  K IS
Sbjct: 920  DITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMIS 979

Query: 634  KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            K  N++I+VRD  RFHHF++GVCSCGDYW
Sbjct: 980  KIVNRDIIVRDSRRFHHFKDGVCSCGDYW 1008



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 161/355 (45%), Gaps = 29/355 (8%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           ++H      G D   F+   L++ Y     +  AR VF +   +    +NA+    +  G
Sbjct: 370 SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEG 429

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK--HGKEIHASVLRHGY 218
              + L+L+  M   G                   S     LL+  H +    SVL    
Sbjct: 430 LHTQALQLFAAMRRAGY------------------SRHPLHLLQYSHSRSRSTSVLN--- 468

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
              V +  +L+D Y++  C+     +F +M  ++ VS++ +IA YA N  A   L LFRE
Sbjct: 469 ---VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFRE 525

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M     D     +   ++L    +L  +  GK IH  ++  GL S   + +AL+ MY++C
Sbjct: 526 MQKLGFDR--QVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKC 583

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G L+  +  F +  ++  +SW +LI+ Y  +G   +A+Q+F +M   G+ P   +F S++
Sbjct: 584 GMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSII 643

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            A S   ++  G+ L   + +    + SV   + +VD+  +   L+EA +  +++
Sbjct: 644 KASSSLAMIGLGRQLHSYLIRSG-YKSSVFSGSVLVDMYAKCGCLDEALRTFDEM 697



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 143/319 (44%), Gaps = 41/319 (12%)

Query: 103 HSHLTDNGFDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           H H     FDQ P    F +  +++ YS    +  A+H+F  +  R    W  + RA   
Sbjct: 272 HLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAA 331

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK--ACVASSCGFSLLKHGKEIHASVLRH 216
           AGR  + L L+R M   G G+  DR T T VL    C   S           +H   ++ 
Sbjct: 332 AGRTSDALSLFRAM--LGEGVIPDRVTVTTVLNLPGCTVPS-----------LHPFAIKF 378

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
           G +  V +  TL+D Y + G +  A  VF +M  K+ V+++AM+   ++ G+  +AL+LF
Sbjct: 379 GLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLF 438

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV--SALVTM 334
             M    +   P     + +LQ   +               R    S+L V   ++L+  
Sbjct: 439 AAMRRAGYSRHP-----LHLLQYSHS---------------RSRSTSVLNVFVNNSLLDF 478

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y++C  L+  + +FD M +RD VS+N +I++Y  +      +++F+EM   G     + +
Sbjct: 479 YSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPY 538

Query: 395 VSVLGACSHAGLVEEGKML 413
            ++L        V  GK +
Sbjct: 539 ATMLSVAGSLPDVHIGKQI 557


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 242/683 (35%), Positives = 376/683 (55%), Gaps = 82/683 (12%)

Query: 16  PYHTNSIA-HLP-----PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL 69
           PY + + A  LP     PKP         NS++ P SL S ++ ++I  L +  ++ Q L
Sbjct: 14  PYASMTFAASLPFSGPSPKPHP-------NSNSNPKSLKSLDQKQIISLLQRSKHINQVL 66

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
            +                               H+ L  NG  QDPF+V +L+   S   
Sbjct: 67  PI-------------------------------HAQLIRNGHSQDPFMVFELLRSCSKCH 95

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           ++D A  +F  T    +Y++ AL      +G   + ++LY RM      I  D +    +
Sbjct: 96  AIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRM--LHDSILPDNYLMASI 153

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGY--NGIVHIM---------------------- 225
           LKAC +       L+ G+E+H+  L+ G   N +V +                       
Sbjct: 154 LKACGSQLA----LREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP 209

Query: 226 ------TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
                 T +I  Y+  G V  AG VFS++  K+ V W+AMI  + RN     ALE FR M
Sbjct: 210 EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGM 269

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
             +  ++ PN  T+V VL AC+ L ALE G+ +H Y+ +  ++  L V +AL+ MY+RCG
Sbjct: 270 --QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCG 327

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            ++  Q VFD M  RDV+++N++IS   ++G   +AI++F+ MI   + P+ ++FV VL 
Sbjct: 328 SIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLN 387

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           ACSH GLV+ G  +F SM +++ + P +EHY CMVDLLGR  +LEEA  +I  +++ P  
Sbjct: 388 ACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDH 447

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
            + G+LL +C++H N+EL E+ +K L +    ++G YVLL+ VYA++  W E  +V+  +
Sbjct: 448 IMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKM 507

Query: 520 EARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579
           +  G+QK PG S IEV  +++ F+  D  HP+ E+++  L  L+  ++ +GY P+ +VVL
Sbjct: 508 KEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVL 567

Query: 580 YDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKE 639
            D++  EKE  +  HSE+LA+ +GLI+T     IR+ KNLR+C DCHS  K I+K   ++
Sbjct: 568 QDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRK 627

Query: 640 ILVRDVNRFHHFRNGVCSCGDYW 662
           ++VRD NRFH+F NG CSCGDYW
Sbjct: 628 VVVRDRNRFHYFENGACSCGDYW 650


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/578 (38%), Positives = 336/578 (58%), Gaps = 9/578 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LL  C    S       H+ +   G + D      LIN+YS    VD AR  F++   ++
Sbjct: 49  LLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKS 108

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  WN +  ALT      E L+L  +M   GT    + FT + VL  C A  C    +  
Sbjct: 109 LVSWNTVIGALTQNAEDREALKLLIQMQREGTPF--NEFTISSVLCNC-AFKCA---ILE 162

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
             ++HA  ++   +    + T L+ +YA+   +  A  +F  M  KN V+WS+M+A Y +
Sbjct: 163 CMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQ 222

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           NG   EAL +FR   +   D  P  ++  S + ACA LA L +GK +H    + G  S +
Sbjct: 223 NGFHEEALLIFRNAQLMGFDQDPFMIS--SAVSACAGLATLIEGKQVHAISHKSGFGSNI 280

Query: 326 PVVSALVTMYARCGKLELGQCVFDH-MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
            V S+L+ MYA+CG +     VF   ++ R +V WN++IS +  H    +A+ +F++M  
Sbjct: 281 YVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQ 340

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            G  P  +++V VL ACSH GL EEG+  F+ M ++H + PSV HY+CM+D+LGRA  + 
Sbjct: 341 RGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVH 400

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
           +A  +IE +       +WGSLL SC+I+ N+E AE A+K LFE+EP NAGN++LLA++YA
Sbjct: 401 KAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYA 460

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
           A   WDEV R ++LL    ++K  G S IE+K K++SF   +  HPQ + ++A L NL  
Sbjct: 461 ANKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVV 520

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           E+K+  Y   T   L+D++   K+ ++  HSEKLA+ FGL+   +   IRI KNLR+C D
Sbjct: 521 ELKKLNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGD 580

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH+F K +SK  ++EI+VRD NRFHHF++G CSCG++W
Sbjct: 581 CHTFMKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 161/325 (49%), Gaps = 15/325 (4%)

Query: 53  NELIQSLCKQGNLRQALDVL---SIEPNP-TQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I +L +    R+AL +L     E  P  + T   +L +C    ++ + + +H+    
Sbjct: 113 NTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIK 172

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              D + F+ T L++VY+   S+ DA  +F+    +    W+++       G  EE L +
Sbjct: 173 AAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLI 232

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +R  N    G   D F  +  + AC     G + L  GK++HA   + G+   +++ ++L
Sbjct: 233 FR--NAQLMGFDQDPFMISSAVSACA----GLATLIEGKQVHAISHKSGFGSNIYVSSSL 286

Query: 229 IDMYARFGCVMYAGFVFSQ-MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           IDMYA+ GC+  A  VF   + V+++V W+AMI+ +AR+  A EA+ LF +  M+     
Sbjct: 287 IDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEK--MQQRGFF 344

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQC 346
           P+ VT V VL AC+ +   E+G+     ++R+  L   +   S ++ +  R G +     
Sbjct: 345 PDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYD 404

Query: 347 VFDHMDKRDVVS-WNSLISSYGVHG 370
           + + M      S W SL++S  ++G
Sbjct: 405 LIERMPFNATSSMWGSLLASCKIYG 429


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/529 (40%), Positives = 328/529 (62%), Gaps = 10/529 (1%)

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R++FD+    T + +N+L RAL  AG     L +YRRM   G+  R + FT  + LKAC 
Sbjct: 80  RNLFDQIPDPTAFCYNSLIRALPAAGSAP-ALAVYRRMLRAGSP-RPNSFTLAFALKACA 137

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNV 253
           A          G+++HA  LR G     ++ T L+++YA+   V  A  VF  MA  KN+
Sbjct: 138 AVPAP----GEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNL 193

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+WSAM++ Y+R GM  EAL LFREM  ++  + P+ VTMVSV+ ACA   AL+ GK +H
Sbjct: 194 VAWSAMVSGYSRVGMVNEALGLFREM--QAVGVEPDEVTMVSVISACAKAGALDLGKWVH 251

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
            YI R+G+   L + +AL+ MYA+CG +E  + VFD M ++D  +W+++I  + +HG   
Sbjct: 252 AYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVE 311

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
            A+ +F  M+   V P+ ++F+ VL AC+H+GLVE+G+  + S+ +   I+PS+E+Y CM
Sbjct: 312 DALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRR-YWSIMQNLGIKPSMENYGCM 370

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLL R+  L++A   +  + + P   +W +LL +C+    +++AE A+KRL ELEP N 
Sbjct: 371 VDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNP 430

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
            NYVLL+++YA+   WD V  ++R ++ + +  + GRS IE+   ++ FV  D+ HP+  
Sbjct: 431 ENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIR 490

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           ++  +L  ++  ++  G+ P T  VL+D+  EEKE  +  HSE+LA+A+GL+ T     I
Sbjct: 491 EIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVI 550

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+ KNLR C DCH   K ISK  N+EI+VRD  RFH F  G CSC D+W
Sbjct: 551 RVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 135/297 (45%), Gaps = 17/297 (5%)

Query: 53  NELIQSLCKQGN------LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N LI++L   G+       R+ L   S  P P   T    L +C    +  +   +H+  
Sbjct: 95  NSLIRALPAAGSAPALAVYRRMLRAGS--PRPNSFTLAFALKACAAVPAPGEGRQLHAQA 152

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK-TRRRTIYVWNALFRALTLAGRGEEV 165
              G     ++ T L+N+Y+  + V  AR VFD     + +  W+A+    +  G   E 
Sbjct: 153 LRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEA 212

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L L+R M     G+  D  T   V+ AC  +      L  GK +HA + R G    + + 
Sbjct: 213 LGLFREMQ--AVGVEPDEVTMVSVISACAKAGA----LDLGKWVHAYIDRKGITVDLELS 266

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           T LIDMYA+ G +  A  VF  M  K+  +WSAMI  +A +G+  +AL LF  M+     
Sbjct: 267 TALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRML--ELK 324

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
           + PN+VT + VL ACA    +E G+     +   G+   +     +V +  R G L+
Sbjct: 325 VRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLD 381



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 110/253 (43%), Gaps = 14/253 (5%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           + ++    + G + +AL +     ++   P + T   ++ +C    +L     VH+++  
Sbjct: 197 SAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDR 256

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   D  L T LI++Y+    ++ AR VFD    +    W+A+     + G  E+ L L
Sbjct: 257 KGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGL 316

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + RM      +R +  T+  VL AC  S     L++ G+   + +   G    +     +
Sbjct: 317 FSRM--LELKVRPNNVTFIGVLSACAHS----GLVEDGRRYWSIMQNLGIKPSMENYGCM 370

Query: 229 IDMYARFGCVMYA-GFVFSQMAVKNVVSW-SAMIACYARNGMAFEALELFREMIMESHDL 286
           +D+  R G +  A  FV       N V W + ++AC + N +        R + +E H+ 
Sbjct: 371 VDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHN- 429

Query: 287 CPNSVTMVSVLQA 299
            P +  ++S L A
Sbjct: 430 -PENYVLLSNLYA 441


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/616 (37%), Positives = 345/616 (56%), Gaps = 46/616 (7%)

Query: 53  NELIQSLCKQGNLRQALDVL-SIEPN-----PTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N LI++L      R AL +  S+ P      P  +TY L L SC+    L   L +HS +
Sbjct: 90  NVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQIHSAV 149

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
                D++ ++    I++YS     +DA  VFD    R +  WNA+       G  +  +
Sbjct: 150 AKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAI 209

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           E++++                 VL+  +  +   +                  GI+  M 
Sbjct: 210 EVFKQF---------------VVLQGSMPDAGTMA------------------GILPAMG 236

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
                 A+   + +   VF  M  K ++SW+AM+A YA N    +A+ELF  M+ME  ++
Sbjct: 237 N-----AKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELF--MLMEKDEV 289

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+S+T+ +VL  C  L+A   GK IH  I R+ +   L + +AL+ MYA CG L+  + 
Sbjct: 290 EPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDARE 349

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +FD M  RDV+SW S+IS+YG HG+G +A+ +F++M+  G+ P  I+FV+VL ACSHAGL
Sbjct: 350 IFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGL 409

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           + +GK  F+SM   + I P  EHY CMVDLLGRA  + EA   I  + IEP  +VWG+LL
Sbjct: 410 LADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALL 469

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +CRIH N+++   A+  LF L P   G YVLL+++YA A  W +V  V+ ++  +G++K
Sbjct: 470 QACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKK 529

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S +E+  ++++F   D  HPQ E ++  L  L  +++  GY P+ +  L+D++ E+
Sbjct: 530 FPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEVEATLHDVEEED 589

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE  +  HSEKLA+AF L+NTS G  IR+T NLR C DCH   K IS    +EI+++D N
Sbjct: 590 KEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLISIITCREIVLKDTN 649

Query: 647 RFHHFRNGVCSCGDYW 662
           R HH   GVCSCGDYW
Sbjct: 650 RIHHIVQGVCSCGDYW 665



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 127/287 (44%), Gaps = 30/287 (10%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
             V ++ +I     + +  +AL LF  M        P+  T    L++C+A   L  G  
Sbjct: 85  TTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQ 144

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           IH  + +  LD  + V  + ++MY+RCG+ E    VFD M  RDVVSWN++I+ +   G 
Sbjct: 145 IHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGL 204

Query: 372 GGKAIQIFKE-MIYHGVSPSPISFVSVLGACSHAGL--VEEGKMLFESMRKEHMIRPSVE 428
             +AI++FK+ ++  G  P   +   +L A  +A    +   + +F++M+ + +I     
Sbjct: 205 FDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELIS---- 260

Query: 429 HYACMVDLLGRAN---KLEEAAKIIEDLRIEPGPKVWGSLLGSC----------RIHCNV 475
            +  M+ +        K  E   ++E   +EP      ++L  C          RIH  +
Sbjct: 261 -WNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEII 319

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
           +        L E    NA     L D+YA+     + + +  L+ AR
Sbjct: 320 KRKNMCPNLLLE----NA-----LMDMYASCGCLKDAREIFDLMSAR 357


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/601 (39%), Positives = 356/601 (59%), Gaps = 21/601 (3%)

Query: 73  SIEP--NP-TQHTYEL-------LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLI 122
           +I+P  NP  Q+++E        LLLS T   SL   L +H+H+   G    P +   LI
Sbjct: 8   AIKPSQNPLNQNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLI 67

Query: 123 NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSD 182
           N+YS       +  VFD+T +++   W+++  A          L+ +RRM     G+R D
Sbjct: 68  NLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRM--LNDGVRPD 125

Query: 183 RFTYTYVLKACVASSCGFSLLKH-GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
              Y    KAC     GF      GK +H   ++ GY   V + ++L+DMYA+ G +  A
Sbjct: 126 DHIYPSATKAC-----GFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDA 180

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
             +F +M  +NVVSWS MI  YA+     EAL LF++ ++E  D+  N  T  SV++ C+
Sbjct: 181 RHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDV--NDFTFSSVIRVCS 238

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
           +   LE GK+IHG  L+   DS   V SAL+++Y++CG +E    VFD +  R++  WNS
Sbjct: 239 SSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNS 298

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           ++ +   H +  +   +F+EM   G+ P+ ISF+SVL ACSHAGLVE+G+  F  MR ++
Sbjct: 299 MLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLMR-DY 357

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
            I P  EHYA +VDLLGRA KL+EA  +I+ + + P   VWG+LL  CRIH + E+A   
Sbjct: 358 GIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFV 417

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS 541
           + R+ E++ +++G +VLL++ YAAA  ++E  R++++L  RG++K  G S +E   K+++
Sbjct: 418 ADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHT 477

Query: 542 FVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVA 601
           F + D  H ++ +++  L  L  EM++ GYV  T  VL  +D EEK   +  HSE+LA+A
Sbjct: 478 FTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIA 537

Query: 602 FGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
           FGLI    G  IR+ KNLR+C DCH+  KF+SK   + ++VRD NRFH F +G CSCGDY
Sbjct: 538 FGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDY 597

Query: 662 W 662
           W
Sbjct: 598 W 598


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/579 (37%), Positives = 341/579 (58%), Gaps = 19/579 (3%)

Query: 90  CTHHNSLSDALNVHSHLTDNG-FDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRR 144
           C  H +      +H H+  +G    D     F+   L ++Y+ F  +DDA  +FD    R
Sbjct: 74  CVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVR 133

Query: 145 TIYVWNALFRALTLA-GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
            +  W  +  AL  A GR +E L     M   G  +  + +T++ VL AC       +  
Sbjct: 134 NVVTWTTVVAALASADGRKQEALRFLVAMRRDG--VAPNAYTFSSVLGACTTPGMLTA-- 189

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
                +HAS ++ G +  V + ++LID Y + G +     VF +M  +++V W+++IA +
Sbjct: 190 -----VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGF 244

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           A++G    A+ELF  M M+      N  T+ SVL+AC  +  LE G+ +H ++L+   D 
Sbjct: 245 AQSGDGVGAIELF--MRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYDRDL 302

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
           IL   +AL+ MY +CG LE    +F  M +RDV+SW++++S    +G   +A+++F  M 
Sbjct: 303 ILH--NALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMK 360

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
             GV+P+ ++ V VL ACSHAGLVE+G   F SM++   I+P  EH+ CMVDLLGRA KL
Sbjct: 361 SQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKL 420

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
           +EA + I  + +EP   +W +LLG+CR+H N  LA  A++ + +LEP + G  VLL++ Y
Sbjct: 421 DEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLSNTY 480

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           A    W + ++  + +  RG++K PGRS IE++++++ F++ D  HP  + +   L  L 
Sbjct: 481 ADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQELNRLI 540

Query: 564 AEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCE 623
             +K  GYVPQT+ VL DL  E+KE ++  HSEK+A+ FG ++   G+ IRI KNLR+C 
Sbjct: 541 GRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFGTMHAVDGKPIRIMKNLRICG 600

Query: 624 DCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           DCH+F K +SK   + I++RD  RFHHF++G CSCGDYW
Sbjct: 601 DCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/625 (35%), Positives = 355/625 (56%), Gaps = 54/625 (8%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD------ 133
           +H    LL SC+   S SD   +H  L       D F+ ++L+ +      VDD      
Sbjct: 12  KHPKLALLQSCS---SFSDLKIIHGFLLRTHLISDVFVASRLLALAL---CVDDSTFHKP 65

Query: 134 ------ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
                 A  +F + +   ++V+N L R  +      +    Y +M    + I  D  T+ 
Sbjct: 66  TNLLGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQM--LKSRIWPDNITFP 123

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
           +++KA     C    +  G++ H+ ++R G+   V++  +L+ MYA  G +  AG +F Q
Sbjct: 124 FLIKASTEMEC----VVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQ 179

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREM---------------------------- 279
           M  ++VVSW++M+A Y + GM  +A E+F EM                            
Sbjct: 180 MPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 239

Query: 280 -IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
            +M+   +  N   MVSV+ +CA L ALE G+  H Y+++  +   L + +ALV MY RC
Sbjct: 240 ELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRC 299

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G++E    VF+ +  +D +SW+S+I    VHG+  KAI  F +M+  G SP  I+  +VL
Sbjct: 300 GEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVL 359

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSH GLV++G  ++E+M++++ I P +EHY C+VD+LGRA KL EA   I  + ++P 
Sbjct: 360 SACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPN 419

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             + G+LLG+C+I+ N E+AER    L E++P ++G YVLL+++YA A  W++++ ++ +
Sbjct: 420 APILGALLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDI 479

Query: 519 LEARGLQKVPGRSRIEVKRKMYSF-VSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKV 577
           ++ + ++K PG S IE+  K+  F +  D+ HP+  ++  L   +  +++  GY   T  
Sbjct: 480 MKEKLVKKPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGD 539

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
             +D+D EEKE  +  HSEKLA+A+G++ T  G TIRI KNLR+CEDCH+ TK IS+   
Sbjct: 540 AFFDVDEEEKETAIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYG 599

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +E +VRD NRFHHFRNG+CSC DYW
Sbjct: 600 REFIVRDRNRFHHFRNGLCSCRDYW 624



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 125/296 (42%), Gaps = 40/296 (13%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH---------- 127
           P   T+  L+ + T    +      HS +   GF  D ++   L+++Y++          
Sbjct: 117 PDNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRI 176

Query: 128 ---------------------FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
                                   V+DAR +FD+   R ++ W+ +          E+ +
Sbjct: 177 FGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAI 236

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +L+  M   G            V+ + ++S      L+ G+  H  V++      + + T
Sbjct: 237 DLFELMKREGV------VANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGT 290

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+DMY R G +  A  VF ++  K+ +SWS++I   A +G A +A+  F +M+      
Sbjct: 291 ALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLG--F 348

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKL 341
            P  +T+ +VL AC+    +++G  I+  + R  G++  L     +V M  R GKL
Sbjct: 349 SPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKL 404


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/603 (37%), Positives = 346/603 (57%), Gaps = 43/603 (7%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
           +L +   +H+ L  NG   DP LV + +     ++ +++  +  V D ++  T++ +N++
Sbjct: 21  TLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFTFNSM 80

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG--KEIH 210
            RA + +         Y R+  +   +  D +T+T++++          LL HG    +H
Sbjct: 81  IRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSA------QLLAHGTGSSVH 134

Query: 211 ASVLRHGYNGIVHIMTTLIDMYA-------------------------------RFGCVM 239
            + +++G+    H+ + LI MYA                               + G V 
Sbjct: 135 GAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVG 194

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
           +A  +F +M+ K+ ++W+AMI+ Y + G + EAL LF   +M+   +  N V+MVSVL A
Sbjct: 195 FARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFN--LMQREGVKVNEVSMVSVLSA 252

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           C+ L AL+QG+  H YI R  L   L + +AL+ MYA+CG +     VF  M +++V +W
Sbjct: 253 CSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTW 312

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           +S I    ++G G K +++F  M    V P+ I+FVSVL  CS  GLVEEG+  FESM K
Sbjct: 313 SSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSK 372

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
            + I P +EHY CMVDL GRA  L+EA   I  + + P    WG+LL +C+I+ N+E+ E
Sbjct: 373 VYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGE 432

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKM 539
            AS+++ ELE  N G YVLL+++YA +  WD V  V++ +  +G++K PG S IEV  ++
Sbjct: 433 LASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEV 492

Query: 540 YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA 599
           + F   D+ HP++ ++  +L  +S  +K  GYV  T  V +D++ EEKE  +  HSEK+A
Sbjct: 493 HEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIA 552

Query: 600 VAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           +AFGLI+ S    IRI KNLR+C DCH  TK ISK  N+EI+VRD NRFHHFR+G CSC 
Sbjct: 553 IAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCK 612

Query: 660 DYW 662
            YW
Sbjct: 613 GYW 615



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 15/237 (6%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHLTD 108
           N +I    + G  R+AL + ++         E+ ++S    C+H  +L      H+++  
Sbjct: 212 NAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIER 271

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           N       L T LI++Y+   +++ A  VF   + + +Y W++    L + G GE+ LEL
Sbjct: 272 NKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLEL 331

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTT 227
           +  M      ++ +  T+  VL+ C        L++ G++   S+ + +G    +     
Sbjct: 332 FSLMK--QDSVQPNEITFVSVLRGCSV----VGLVEEGRKHFESMSKVYGIEPRLEHYGC 385

Query: 228 LIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-ACYARNGMAFEALELFREMIME 282
           ++D+Y R G +  A    + M V+ +V +W A++ AC     M  E  EL    I+E
Sbjct: 386 MVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNM--EMGELASRKIVE 440


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/611 (37%), Positives = 344/611 (56%), Gaps = 39/611 (6%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQ-DPFLV-TKLINVYSHFDSVDDARHVFDK-TR 142
           LLL C    S+     + + +  +     DP ++  K I V S   ++  +  +F+    
Sbjct: 27  LLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLS 86

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
              I+ +NAL +A +        +  +            D +T+T VLKAC     G + 
Sbjct: 87  FPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACA----GLAQ 142

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV------------ 250
           +  G+++H  V ++G    + +  +L+D+Y + GC   A  +F +M V            
Sbjct: 143 VLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISG 202

Query: 251 -------------------KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
                              KN+VSWS MI+ YARN    +A+ELFR+M  E   L PN V
Sbjct: 203 YCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEG-GLAPNDV 261

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T+VSVL ACA L AL+ GK IH +I R  ++  L + +AL  MYA+CG +   + VF  M
Sbjct: 262 TLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEM 321

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
            +RDV+SW+ +I    ++GY  +A   F EMI  G+ P+ ISF+ +L AC+HAGLV++G 
Sbjct: 322 HERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGL 381

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
             F+ M + + I P +EHY C+VDLL RA +L++A  +I  + ++P   VWG+LLG CRI
Sbjct: 382 EYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRI 441

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           + + E  ER   R+ EL+  ++G+ V LA+VYA+    D+    +  +      K PG S
Sbjct: 442 YKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCS 501

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            IE+   +Y F   D  HPQ  ++++++  L  +MK  GY P+T +V++++D EEKE  +
Sbjct: 502 WIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDAL 561

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
             HSEKLA+AFGLINTS+G TIRI KNLR+C DCH   K ISK   +EI+VRD +RFHHF
Sbjct: 562 STHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHF 621

Query: 652 RNGVCSCGDYW 662
           ++G CSC DYW
Sbjct: 622 KDGKCSCNDYW 632



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 147/328 (44%), Gaps = 44/328 (13%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH--- 127
           VL   PNP ++T+  +L +C     + +   VH  +T  G + + F+   L+++Y     
Sbjct: 118 VLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGC 177

Query: 128 -------FDS---------------------VDDARHVFDKTRRRTIYVWNALFRALTLA 159
                  FD                      VD AR VFD    + +  W+ +       
Sbjct: 178 NCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARN 237

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
            +  + +EL+R+M   G G+  +  T   VL AC         L  GK IH  + R+   
Sbjct: 238 EKYADAIELFRQMQHEG-GLAPNDVTLVSVLSACAH----LGALDLGKWIHRFIRRNKIE 292

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             + +   L DMYA+ GCV+ A  VF +M  ++V+SWS +I   A  G A EA   F EM
Sbjct: 293 VGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEM 352

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALVTMYA 336
           I +   L PN ++ + +L AC     +++G  +  + +   +  I P +     +V + +
Sbjct: 353 IEDG--LEPNDISFMGLLTACTHAGLVDKG--LEYFDMMPQVYGITPKIEHYGCVVDLLS 408

Query: 337 RCGKLELGQCVFDHMDKR-DVVSWNSLI 363
           R G+L+  + + + M  + +V+ W +L+
Sbjct: 409 RAGRLDQAESLINSMPMQPNVIVWGALL 436


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/609 (37%), Positives = 347/609 (56%), Gaps = 46/609 (7%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LL +C+     S+   +H+ +   G D D  +  +L   Y+    +D +  +  +T+  T
Sbjct: 30  LLAACSTARRASE---LHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPT 86

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
              + +   A +  G     L L   M   G           + L A + +  G SL   
Sbjct: 87  TIFYTSAIHAHSSRGLHLPGLALLSDMLSEGL------LPTAHTLSASLPACRGLSL--- 137

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMY-------------------------------AR 234
           G+ +HA   +   +G  ++ T L+ MY                               A 
Sbjct: 138 GRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYAN 197

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A  +F  +  K+ + W+AMI  Y ++G   EAL+LFR M+  S +  P+ VT+V
Sbjct: 198 MGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAE--PDEVTVV 255

Query: 295 SVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
            VL A A L  +E GK +H Y+   R +   + V +ALV MY +CG LE    VF  +  
Sbjct: 256 LVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGN 315

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +D+V WN++I+ Y +HG   KA+++F ++   G+ P+ I+F+ +L ACSH+GLVEEG+  
Sbjct: 316 KDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSF 375

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
           F+SM  E+ I P +EHY CMVDLLGRA  +EEA  +++ L I P   +W SLL +CR+H 
Sbjct: 376 FQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHK 435

Query: 474 NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI 533
           N+ L +R +  L      N+G Y+LL+++YAA   W+EV RV+ +++A G+QK PG S I
Sbjct: 436 NMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAI 495

Query: 534 EVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG 593
           E+ RK+Y FV+ D  HP  ++++A+L  ++A +KE G+VPQT++VL+DLD   KE+ +  
Sbjct: 496 EIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAV 555

Query: 594 HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
           HSEKLAVAFGLI++  G TI+I KNLR C DCH+  K ISK  +++I+ RD NRFHHF +
Sbjct: 556 HSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVD 615

Query: 654 GVCSCGDYW 662
           G C+CGDYW
Sbjct: 616 GSCTCGDYW 624


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/562 (40%), Positives = 333/562 (59%), Gaps = 15/562 (2%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            +H ++    F +DP +   LI +YS    +++A  VF +T  R +  W A+        
Sbjct: 329 QIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCL 388

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
             ++ LE Y+ M   G  I  D  T   VL AC   SC    L  G  +H    + G   
Sbjct: 389 MPQKALETYKMMEAEG--IMPDEITIAIVLSAC---SC-LCNLDMGMNLHEVAKQKGLVS 442

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
              +  +LIDMYA+  C+  A  +F     KN+VSW+++I     N   FEAL  FREMI
Sbjct: 443 YSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMI 502

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARC 338
                L PNSVT+V VL ACA + AL  GK IH + LR G+  D  +P  +A++ MY RC
Sbjct: 503 RR---LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMP--NAILDMYVRC 557

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G++E     F  +D  +V SWN L++ Y   G G  A ++F+ M+   VSP+ ++F+S+L
Sbjct: 558 GRMEYAWKQFFSVD-HEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISIL 616

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACS +G+V EG   F SM+ ++ I P+++HYAC+VDLLGR+ KLEEA + I+ + ++P 
Sbjct: 617 CACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPD 676

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
           P VWG+LL SCRIH +VEL E A++ +F+ + T+ G Y+LL+++YA    WD+V  V+++
Sbjct: 677 PAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKM 736

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
           +   GL   PG S +EVK  +++F+S D FHPQ ++++ALL     +MKE G V   +  
Sbjct: 737 MRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKEAG-VEGPESS 795

Query: 579 LYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANK 638
             D+    K  I  GHSE+LA+ FGLIN+  G  I +TKNL +C+ CH+  KFIS+   +
Sbjct: 796 HMDIMEASKADIFCGHSERLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFISREVRR 855

Query: 639 EILVRDVNRFHHFRNGVCSCGD 660
           EI VRD  +FHHF+ G+CSC D
Sbjct: 856 EISVRDAEQFHHFKGGICSCTD 877



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 137/451 (30%), Positives = 228/451 (50%), Gaps = 14/451 (3%)

Query: 26  PPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS----IEPNPTQH 81
           PP   +   CVS +++TT +  S+ N N  I  LC  GNL +A+  L     +       
Sbjct: 48  PPFRKAKHICVSNSATTTTSLSSNHNPNSHIYQLCLLGNLDRAMSYLDSMHELRIPVEDD 107

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
            Y  L+  C    +  +   V+S+++ +       L   L++++  F ++ DA +VF + 
Sbjct: 108 AYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRM 167

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
            +R ++ WN L      AG  +E L+LY RM     G++ D +T+  VL+ C     G  
Sbjct: 168 EKRNLFSWNVLVGGYAKAGLFDEALDLYHRM--LWVGVKPDVYTFPCVLRTC----GGMP 221

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L  G+EIH  V+R+G+   V ++  LI MY + G V  A  VF +M  ++ +SW+AMI+
Sbjct: 222 NLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMIS 281

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            Y  NG+  E L LF  MI    D  P+ +TM SV+ AC  L     G+ IHGY+LR   
Sbjct: 282 GYFENGVCLEGLRLFGMMIKYPVD--PDLMTMTSVITACELLGDDRLGRQIHGYVLRTEF 339

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
                + ++L+ MY+  G +E  + VF   + RD+VSW ++IS Y       KA++ +K 
Sbjct: 340 GRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKM 399

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   G+ P  I+   VL ACS    ++ G  L E  +++ ++  S+   + ++D+  +  
Sbjct: 400 MEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANS-LIDMYAKCK 458

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            +++A +I     +E     W S++   RI+
Sbjct: 459 CIDKALEIFHS-TLEKNIVSWTSIILGLRIN 488



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 135/302 (44%), Gaps = 28/302 (9%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T  ++L +C+   +L   +N+H      G      +   LI++Y+    +D A  +
Sbjct: 407 PDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEI 466

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F  T  + I  W ++   L +  R  E L  +R M      IR  R     V   CV S+
Sbjct: 467 FHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM------IR--RLKPNSVTLVCVLSA 518

Query: 198 CG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           C     L  GKEIHA  LR G +    +   ++DMY R G + YA   F  +    V SW
Sbjct: 519 CARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVD-HEVTSW 577

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-----KM 311
           + ++  YA  G    A ELF+ M+    ++ PN VT +S+L AC+    + +G      M
Sbjct: 578 NILLTGYAERGKGAHATELFQRMV--ESNVSPNEVTFISILCACSRSGMVAEGLEYFNSM 635

Query: 312 IHGYILRRGLDSILPVV---SALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYG 367
            + Y       SI+P +   + +V +  R GKLE        M  K D   W +L++S  
Sbjct: 636 KYKY-------SIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCR 688

Query: 368 VH 369
           +H
Sbjct: 689 IH 690


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/562 (39%), Positives = 348/562 (61%), Gaps = 8/562 (1%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH+H+  +G+ +   L+TKL+N+     S+   R +F        +++ +L ++ T    
Sbjct: 31  VHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKS-TSKSH 89

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
              +  LY       + +    +T+T V+K+C       S LKHG+ +H  VL HG+   
Sbjct: 90  NFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCA----DLSALKHGRVVHGHVLVHGFGLD 145

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V++   L+ +Y + G ++ A  VF ++  +++V+W++MI+ Y +NG A EA+ LF  M  
Sbjct: 146 VYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRM-- 203

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           +   + P+S T VSVL ACA L A   G  +H YI+  GLD  + + ++L+ MY RCG +
Sbjct: 204 KETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNV 263

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
              + VFD M +R+VV+W ++IS YG +GYG +A+++F EM  +G+ P+ I+FV+VL AC
Sbjct: 264 SKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSAC 323

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII-EDLRIEPGPK 460
           +HAGLV EG+ LF S+R+E+ + P VEH  C+VD+LGRA  L+EA   I E++   P P 
Sbjct: 324 AHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPA 383

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
           +  ++LG+C++H N +L  + ++ L   EP N  +YV+L+++YA A   D+V+ V+  + 
Sbjct: 384 ILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMI 443

Query: 521 ARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY 580
            + L+K  G S +EV +K Y F   D+ H +   ++  L  L  +  E GYVP +  V++
Sbjct: 444 RKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMH 503

Query: 581 DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEI 640
           +L+ EE+E  +  HSEKLA+AFGL+ TS G  IRI KNLR+CEDCHS  KFIS  +++EI
Sbjct: 504 ELEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREI 563

Query: 641 LVRDVNRFHHFRNGVCSCGDYW 662
           +VRD  RFHHF+ G CSC DYW
Sbjct: 564 IVRDKLRFHHFKVGSCSCLDYW 585



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 175/372 (47%), Gaps = 48/372 (12%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P+ +T+  ++ SC   ++L     VH H+  +GF  D ++   L+ +Y     + +AR 
Sbjct: 108 SPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARK 167

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFDK R R+I  WN++       G  +E + L+ RM    TG+  D  T+  VL AC A 
Sbjct: 168 VFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMK--ETGVEPDSATFVSVLSAC-AH 224

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
              FSL   G  +H  ++ +G +  V + T+LI+MY R G V  A  VF  M  +NVV+W
Sbjct: 225 LGAFSL---GCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAW 281

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AMI+ Y  NG   +A+ELF E  M  + L PNS+T V+VL ACA    + +G+ +   I
Sbjct: 282 TAMISGYGTNGYGSQAVELFHE--MRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASI 339

Query: 317 LRRGLDSILPVVS---ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             R    ++P V     LV M  R G L+                               
Sbjct: 340 --REEYHLVPGVEHNVCLVDMLGRAGLLD------------------------------- 366

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A    KE I    +P+P    ++LGAC      + G  + E +       P+  HY  +
Sbjct: 367 EAYNFIKEEIPE--NPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPA--HYVIL 422

Query: 434 VDLLGRANKLEE 445
            ++   A ++++
Sbjct: 423 SNIYALAGRMDQ 434



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 118/204 (57%), Gaps = 3/204 (1%)

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN- 266
           ++HA ++  GY     ++T L+++    G + Y   +F  +   +   ++++I   +++ 
Sbjct: 30  QVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSH 89

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
             +  +L  +  M++   ++ P++ T  SV+++CA L+AL+ G+++HG++L  G    + 
Sbjct: 90  NFSIYSLYFYSRMVLS--NVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVY 147

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           V +ALV +Y +CG L   + VFD + +R +V+WNS+IS Y  +G+  +AI +F  M   G
Sbjct: 148 VQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETG 207

Query: 387 VSPSPISFVSVLGACSHAGLVEEG 410
           V P   +FVSVL AC+H G    G
Sbjct: 208 VEPDSATFVSVLSACAHLGAFSLG 231



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 17/192 (8%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I    + G  ++A+ +        +EP+    T+  +L +C H  + S    VH ++
Sbjct: 181 NSMISGYEQNGFAKEAIGLFDRMKETGVEPDSA--TFVSVLSACAHLGAFSLGCWVHEYI 238

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             NG D +  L T LIN+Y    +V  AR VFD  + R +  W A+       G G + +
Sbjct: 239 VGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAV 298

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR--HGYNGIVHI 224
           EL+  M     G+  +  T+  VL AC  +     L+  G+ + AS+    H   G+ H 
Sbjct: 299 ELFHEMR--RNGLFPNSITFVAVLSACAHA----GLVNEGRRLFASIREEYHLVPGVEH- 351

Query: 225 MTTLIDMYARFG 236
              L+DM  R G
Sbjct: 352 NVCLVDMLGRAG 363


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/611 (36%), Positives = 353/611 (57%), Gaps = 22/611 (3%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           +Q  C +  +   LD L     P ++T   ++ +CT   S+   L +HS     GF  D 
Sbjct: 230 VQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDA 289

Query: 116 FLVTKLINVYSHFD---SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE-EVLELYRR 171
            +   L+++Y+  +   ++D A  VF++ R+  +  W AL      +G  E +V+ L+  
Sbjct: 290 CVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGE 349

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           M      I+ +  TY+ +LKAC       S    G+++HA V++        +   L+ M
Sbjct: 350 M--LNESIKPNHITYSSILKACA----NISDHDSGRQVHAHVIKSNQAAAHTVGNALVSM 403

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           YA  GC+  A  VF+Q+  +      +MI+C        E  +   +  +   D+  +S 
Sbjct: 404 YAESGCMEEARRVFNQLYER------SMISCIT------EGRDAPLDHRIGRMDMGISSS 451

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T  S++ A A++  L +G+ +H   L+ G  S   V ++LV+MY+RCG LE     F+ +
Sbjct: 452 TFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNEL 511

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             R+V+SW S+IS    HGY  +A+ +F +MI  GV P+ +++++VL ACSH GLV EGK
Sbjct: 512 KDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGK 571

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
             F SM+++H + P +EHYACMVDLL R+  ++EA + I ++ ++    VW +LLG+CR 
Sbjct: 572 EYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRS 631

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H N+E+ E A+K + ELEP +   YVLL+++YA A +WDEV R++  +    L K  G S
Sbjct: 632 HDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLS 691

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            +EV+   + F + D  HP+ + ++  L  L  E+K  GYVP T +VL+D+  E KE+ +
Sbjct: 692 WMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYL 751

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
           L HSEK+AVAFGLI TS  + IRI KNLR+C DCHS  K++SK   +EI++RD NRFH  
Sbjct: 752 LQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRM 811

Query: 652 RNGVCSCGDYW 662
           ++G CSCG+YW
Sbjct: 812 KDGECSCGEYW 822



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 162/348 (46%), Gaps = 12/348 (3%)

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR-RTIYVWNALFRALTLAGRGEEVLELY 169
            D+D  +   L+ +YS   +V  AR+VFD  R  R I  W A+   L   G   E L L 
Sbjct: 80  LDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLI 139

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
             M    +G+  + +T   V  AC        +      +   +   G +  + + + LI
Sbjct: 140 GEM--LESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTD--IAVGSALI 195

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
           DM AR G +  A  VF  +  K VV W+ +I+ Y +   A EA+E+F + + +  +  P+
Sbjct: 196 DMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFE--PD 253

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG---KLELGQC 346
             TM S++ AC  L ++  G  +H   LR G  S   V   LV MYA+      ++    
Sbjct: 254 RYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANK 313

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYG-GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
           VF+ M K DV+SW +LIS Y   G    K + +F EM+   + P+ I++ S+L AC++  
Sbjct: 314 VFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANIS 373

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
             + G+ +   + K +         A +V +   +  +EEA ++   L
Sbjct: 374 DHDSGRQVHAHVIKSNQAAAHTVGNA-LVSMYAESGCMEEARRVFNQL 420



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 180/391 (46%), Gaps = 45/391 (11%)

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           +  D  + + LI++ +    +  AR VFD    +T+ VW  L          EE +E++ 
Sbjct: 184 WGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIF- 242

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            ++    G   DR+T + ++ AC         ++ G ++H+  LR G+     +   L+D
Sbjct: 243 -LDFLEDGFEPDRYTMSSMISACTE----LGSVRLGLQLHSLALRMGFASDACVSCGLVD 297

Query: 231 MYARFG---CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA-FEALELFREMIMESHDL 286
           MYA+      + YA  VF +M   +V+SW+A+I+ Y ++G+   + + LF EM+ ES  +
Sbjct: 298 MYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNES--I 355

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            PN +T  S+L+ACA ++  + G+ +H ++++    +   V +ALV+MYA  G +E  + 
Sbjct: 356 KPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARR 415

Query: 347 VFDHMDKRDVVS-------------------------WNSLISSYGVHGYGGKAIQIFKE 381
           VF+ + +R ++S                         + SLIS+    G   K  Q+   
Sbjct: 416 VFNQLYERSMISCITEGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAM 475

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
            +  G         S++   S  G +E+    F  ++  ++I      +  M+  L +  
Sbjct: 476 TLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVI-----SWTSMISGLAKHG 530

Query: 442 KLEEAAKIIEDL---RIEPGPKVWGSLLGSC 469
             E A  +  D+    ++P    + ++L +C
Sbjct: 531 YAERALSLFHDMILTGVKPNDVTYIAVLSAC 561



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 129/266 (48%), Gaps = 24/266 (9%)

Query: 203 LKHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFGCVMYAGFVFSQM-AVKNVVSWSAMI 260
           L+ G+ +H  +LR    +    +  +L+ +Y+R G V  A  VF  M  ++++VSW+AM 
Sbjct: 64  LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMA 123

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC-----AALAALEQGKMIHGY 315
           +C ARNG   E+L L  EM+     L PN+ T+ +V  AC       L       ++H  
Sbjct: 124 SCLARNGAERESLLLIGEML--ESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKM 181

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
            L  G D  + V SAL+ M AR G L   + VFD + ++ VV W  LIS Y       +A
Sbjct: 182 GLW-GTD--IAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEA 238

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC--- 432
           ++IF + +  G  P   +  S++ AC+  G V  G  L         +R      AC   
Sbjct: 239 VEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQL-----HSLALRMGFASDACVSC 293

Query: 433 -MVDLLGRAN---KLEEAAKIIEDLR 454
            +VD+  ++N    ++ A K+ E +R
Sbjct: 294 GLVDMYAKSNIEQAMDYANKVFERMR 319


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/586 (37%), Positives = 339/586 (57%), Gaps = 45/586 (7%)

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           DPF+ T  +++Y+    ++ AR+VFD+   R +  WN +       G  +E  +L+  M 
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
            +   +  D      ++ AC  +      +++ + I+  ++ +      H++T L+ MYA
Sbjct: 205 DSN--VMPDEMILCNIVSACGRTGN----MRYNRAIYEFLIENDVRMDTHLLTALVTMYA 258

Query: 234 RFGCV--------------------MYAGF-----------VFSQMAVKNVVSWSAMIAC 262
             GC+                    M +G+           +F Q   K++V W+ MI+ 
Sbjct: 259 GAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISA 318

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y  +    EAL +F EM      + P+ V+M SV+ ACA L  L++ K +H  I   GL+
Sbjct: 319 YVESDYPQEALRVFEEMCCSG--IKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLE 376

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
           S L + +AL+ MYA+CG L+  + VF+ M +R+VVSW+S+I++  +HG    A+ +F  M
Sbjct: 377 SELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARM 436

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
               V P+ ++FV VL  CSH+GLVEEGK +F SM  E+ I P +EHY CMVDL GRAN 
Sbjct: 437 KQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANL 496

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           L EA ++IE + +     +WGSL+ +CRIH  +EL + A+KR+ ELEP + G  VL++++
Sbjct: 497 LREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNI 556

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           YA    W++V+ ++R++E + + K  G SRI+   K + F+  D+ H Q  +++A L  +
Sbjct: 557 YAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEV 616

Query: 563 SAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE------TIRIT 616
            +++K  GYVP    VL D++ EEK+ +VL HSEKLA+ FGL+N  K E       IRI 
Sbjct: 617 VSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIV 676

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+CEDCH F K +SK   +EI+VRD  RFH ++NG+CSC DYW
Sbjct: 677 KNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/659 (35%), Positives = 369/659 (55%), Gaps = 17/659 (2%)

Query: 12  LLRSPYHTNS-IAHLPPKPSSVCCCVSLNSSTTPTSLSSRNK---NELIQSLCKQGNLRQ 67
           +L+  Y +N+ I        SV  CVS+ +      +SS++      +I S  +     +
Sbjct: 72  VLKVGYGSNTFIGTALIDAYSVSGCVSM-AREVFDEISSKDMVSWTGMIASYAENDCFSE 130

Query: 68  ALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
           AL+  S        P   T+  +L +C    +      VH  +    +++D ++   L+ 
Sbjct: 131 ALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLE 190

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +Y+     DDA   F    +  +  W+ +      +G+ E+ LE++ +M      +  ++
Sbjct: 191 LYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAF--VIPNQ 248

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           FT++ VL+A    S     L   K IH   L+ G +  V +   L+  YA+ GC+  +  
Sbjct: 249 FTFSSVLQA----SADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSME 304

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +F  ++ +N VSW+ +I  Y + G    AL LF  M+   + +    VT  S+L+ACA L
Sbjct: 305 LFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNML--RYQVQATEVTYSSILRACATL 362

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
           AALE G  +H    +      + V +AL+ MYA+CG ++  + +FD +D RD VSWN++I
Sbjct: 363 AALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAII 422

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
             Y +HG G +AI++F  M      P  ++FV VL ACS+ G ++EGK  F SM++++ I
Sbjct: 423 CGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGI 482

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
            P +EHY CMV L+GR+  L++A K IED+  EP   +W +LLG+C IH +VEL   +++
Sbjct: 483 EPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQ 542

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
           R+ ELEP +  ++VLL+++YA A  W  V  V++ ++ +G++K PG S IE +  ++ F 
Sbjct: 543 RVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFT 602

Query: 544 SVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFG 603
             D  H   + ++ +L  L+ + ++ GY PQ   VL D++ +EKER++  HSE+LA+AFG
Sbjct: 603 VADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFG 662

Query: 604 LINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           L+    G  IRI KNLR+C DCHS  K ISK   ++I+VRD+NRFHHF NG CSC DYW
Sbjct: 663 LVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 10/336 (2%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E NP   T  L LL       L     VH  +   G+  + F+ T LI+ YS    V  A
Sbjct: 43  ELNPFVFTTVLKLLVSMEWAELGRI--VHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMA 100

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R VFD+   + +  W  +  +        E LE + +M     G + + FT+  VLKAC+
Sbjct: 101 REVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMR--VAGFKPNNFTFAGVLKACL 158

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
               G      GK +H SVL+  Y   +++   L+++Y R G    A   F  M   +V+
Sbjct: 159 ----GLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVI 214

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
            WS MI+ +A++G + +ALE+F +  M    + PN  T  SVLQA A + +L+  K IHG
Sbjct: 215 PWSFMISRFAQSGQSEKALEIFCQ--MRRAFVIPNQFTFSSVLQASADIESLDLSKTIHG 272

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
           + L+ GL + + V +AL+  YA+CG +E    +F+ +  R+ VSWN++I SY   G G +
Sbjct: 273 HALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGER 332

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           A+ +F  M+ + V  + +++ S+L AC+    +E G
Sbjct: 333 ALSLFSNMLRYQVQATEVTYSSILRACATLAALELG 368



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 134/264 (50%), Gaps = 8/264 (3%)

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD+   R    +  L      + +  E  EL+ R++G G  +  + F +T VLK  V+ 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHEL--NPFVFTTVLKLLVS- 58

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                  + G+ +H  VL+ GY     I T LID Y+  GCV  A  VF +++ K++VSW
Sbjct: 59  ---MEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSW 115

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + MIA YA N    EALE F +M +      PN+ T   VL+AC  L   + GK +H  +
Sbjct: 116 TGMIASYAENDCFSEALEFFSQMRVAGFK--PNNFTFAGVLKACLGLQNFDAGKTVHCSV 173

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           L+   +  L V   L+ +Y RCG  +     F  M K DV+ W+ +IS +   G   KA+
Sbjct: 174 LKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKAL 233

Query: 377 QIFKEMIYHGVSPSPISFVSVLGA 400
           +IF +M    V P+  +F SVL A
Sbjct: 234 EIFCQMRRAFVIPNQFTFSSVLQA 257



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 2/181 (1%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF +M  +N VS+  +I  YA++    EA ELF  +  E H+L P   T  +VL+   ++
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFT--TVLKLLVSM 59

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
              E G+++HG +L+ G  S   + +AL+  Y+  G + + + VFD +  +D+VSW  +I
Sbjct: 60  EWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMI 119

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           +SY  +    +A++ F +M   G  P+  +F  VL AC      + GK +  S+ K +  
Sbjct: 120 ASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYE 179

Query: 424 R 424
           R
Sbjct: 180 R 180


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/554 (40%), Positives = 326/554 (58%), Gaps = 44/554 (7%)

Query: 147 YVWNALFRALTLA-----GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
           ++WN L RA   A     G     + ++ RM   G  ++ D  T+ ++L++  + S    
Sbjct: 25  FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHG--VQPDFHTFPFLLQSFASPS---- 78

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ-------------- 247
           LL  G+ +HA +LR G      + T+LI MY+  G + +A  VF +              
Sbjct: 79  LLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIIN 138

Query: 248 -----------------MAVKNVVSWSAMIACYARNGMAFEALELFREM-IMESHDLCPN 289
                            M  +NV+SWS MI  Y R G   EAL LFREM ++  +D+ PN
Sbjct: 139 ANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPN 198

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
             TM  VL AC  L ALE GK  H YI + G+   + + +AL+ MYA+CG +E    VF 
Sbjct: 199 EFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFS 258

Query: 350 HMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           ++   +DV++W+++IS   +HG   + + +F +MI  GV P+ ++F++V  AC H GLV 
Sbjct: 259 NLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVS 318

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EGK     M +++ I P+++HY CMVDL GRA +++EA  +++ + +EP   VWG+LL  
Sbjct: 319 EGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSG 378

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
            R+H ++E  E A K+L ELEPTN+G YVLL++VYA    W++V+ V+ L+E  G++KVP
Sbjct: 379 SRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVP 438

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S IEV   ++ F   D+ HP+  Q+H +L  +   +K +GYV  TK VL DLD E KE
Sbjct: 439 GCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKE 498

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSEKLA+A+G + TS G  IRI KNLR+C DCH   K ISK  ++EI+VRD NRF
Sbjct: 499 LALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRF 558

Query: 649 HHFRNGVCSCGDYW 662
           HHF  G+CSC DYW
Sbjct: 559 HHFTQGLCSCRDYW 572



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 161/332 (48%), Gaps = 47/332 (14%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P  HT+  LL S    + L    +VH+ +   G   DPF+ T LI++YS   ++  AR 
Sbjct: 61  QPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQ 120

Query: 137 VFDKTRRRTIYVWNALFRALTLAG-------------------------------RGEEV 165
           VFD+  +  +  WN++  A   AG                               + +E 
Sbjct: 121 VFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEA 180

Query: 166 LELYRRMNGTGTG-IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
           L L+R M   G   +R + FT + VL AC         L+HGK  HA + + G    V +
Sbjct: 181 LALFREMQMLGVNDVRPNEFTMSGVLAACGR----LGALEHGKWAHAYIDKCGMPVDVVL 236

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAV-KNVVSWSAMIACYARNGMAFEALELFREMIMES 283
            T LIDMYA+ G V  A +VFS +   K+V++WSAMI+  A +G+A E + LF +MI  +
Sbjct: 237 GTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMI--N 294

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-SILPVV---SALVTMYARCG 339
             + PN+VT ++V  AC     + +GK    Y+ R   D SI+P +     +V +Y R G
Sbjct: 295 QGVRPNAVTFLAVFCACVHGGLVSEGK---DYLRRMTEDYSIIPTIQHYGCMVDLYGRAG 351

Query: 340 KLELGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
           +++    V   M  + DV+ W +L+S   +HG
Sbjct: 352 RIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 383


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/439 (45%), Positives = 287/439 (65%), Gaps = 2/439 (0%)

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           ++T +I  Y+R G V  A  +F QM  K++V WSAMI+ YA +    EAL LF EM  + 
Sbjct: 16  VLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEM--QV 73

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
             + P+ VT++SV+ ACA L  L++ K IH Y+ + GL   LPV +AL+ MYA+CG L  
Sbjct: 74  FGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGA 133

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
            + VF+ M  R+V+SW S+I+++ +HG    A++ F +M    + P+ ++FV VL ACSH
Sbjct: 134 ARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSH 193

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
           AGLVEEG+  F SM  EH I P  EHY CMVDL GRAN L +A +++E + + P   +WG
Sbjct: 194 AGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWG 253

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           SL+ +C+IH   EL E A+K++ ELEP + G  V L+++YA    W +V  ++ L++ RG
Sbjct: 254 SLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQRG 313

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
           + K  G SRIE+  ++Y FV  D+ H Q ++++  L  +  E+K  GY P T+ VL D++
Sbjct: 314 ISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRSVLVDVE 373

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            E K+ +VL HSEKLA+ +GL+   KG  IRI KNLR+CEDCH+F K +SK    EI+VR
Sbjct: 374 EEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYGMEIIVR 433

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D  RFHH++ GVCSC DYW
Sbjct: 434 DRTRFHHYKAGVCSCNDYW 452



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 131/258 (50%), Gaps = 14/258 (5%)

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           ++T +I+ YS    V+DAR +FD+   + +  W+A+      + + +E L L+  M   G
Sbjct: 16  VLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFG 75

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
             I+ D+ T   V+ AC        +L   K IH  V ++G  G + +   LIDMYA+ G
Sbjct: 76  --IKPDQVTILSVISACAR----LGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCG 129

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            +  A  VF +M  +NV+SW++MI  +A +G A  AL+ F +  M+  ++ PN VT V V
Sbjct: 130 NLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQ--MKDENIKPNGVTFVGV 187

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPV---VSALVTMYARCGKLELGQCVFDHMD- 352
           L AC+    +E+G+     +      +I P       +V ++ R   L     + + M  
Sbjct: 188 LYACSHAGLVEEGRRTFASMTNE--HNITPKHEHYGCMVDLFGRANLLRDALELVETMPL 245

Query: 353 KRDVVSWNSLISSYGVHG 370
             +VV W SL+++  +HG
Sbjct: 246 APNVVIWGSLMAACQIHG 263



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 91/168 (54%), Gaps = 5/168 (2%)

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           L V++A+++ Y+R G++E  + +FD M+++D+V W+++IS Y       +A+ +F EM  
Sbjct: 14  LVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQV 73

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            G+ P  ++ +SV+ AC+  G+++  K +   + K + +  ++     ++D+  +   L 
Sbjct: 74  FGIKPDQVTILSVISACARLGVLDRAKWIHMYVDK-NGLGGALPVNNALIDMYAKCGNLG 132

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
            A  + E ++       W S++ +  IH +   A  A K  ++++  N
Sbjct: 133 AARGVFEKMQ-SRNVISWTSMINAFAIHGD---ASNALKFFYQMKDEN 176



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 112/274 (40%), Gaps = 44/274 (16%)

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
           NL   + V  I+P+  Q T   ++ +C     L  A  +H ++  NG      +   LI+
Sbjct: 66  NLFSEMQVFGIKPD--QVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALID 123

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +Y+   ++  AR VF+K + R +  W ++  A  + G     L+ + +M      I+ + 
Sbjct: 124 MYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMK--DENIKPNG 181

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
            T+  VL AC  S  G  L++ G+   AS+         H +T     +  +GC      
Sbjct: 182 VTFVGVLYAC--SHAG--LVEEGRRTFASMTNE------HNITP---KHEHYGC------ 222

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
                          M+  + R  +  +ALEL     +E+  L PN V   S++ AC   
Sbjct: 223 ---------------MVDLFGRANLLRDALEL-----VETMPLAPNVVIWGSLMAACQIH 262

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
              E G+     +L    D    +V  L  +YA+
Sbjct: 263 GENELGEFAAKQVLELEPDHDGALVQ-LSNIYAK 295


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/678 (35%), Positives = 358/678 (52%), Gaps = 101/678 (14%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS----------H 127
           P  +TY L++ +C           +H H+   GFD D ++   LIN+Y+           
Sbjct: 139 PDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKL 198

Query: 128 FD---------------------SVDDARHVFDKTRRRTIYV------------------ 148
           FD                      V++A+ +FD+  +R I                    
Sbjct: 199 FDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAW 258

Query: 149 -------------WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
                        W+AL       G  EE L ++  MN  G  +R D      VL AC  
Sbjct: 259 KLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANG--MRLDEVVVVSVLSACAH 316

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ-------- 247
                S++K GK IH  V+R G    V++   LI MY+  G +M A  +F+         
Sbjct: 317 ----LSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQIS 372

Query: 248 -----------------------MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
                                  M  K++VSWSA+I+ YA++    E L LF EM  +  
Sbjct: 373 WNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEM--QLG 430

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
            + P+   +VSV+ AC  LAAL+QGK +H YI + GL   + + + L+ MY +CG +E  
Sbjct: 431 QIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENA 490

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
             VF+ M+++ V SWN+LI    V+G   +++ +F EM  +GV P+ I+F+ VLGAC H 
Sbjct: 491 LEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHM 550

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           GLV+EG+  F SM ++H I P+V+HY CMVDLLGRA  L EA K+IE + + P    WG+
Sbjct: 551 GLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGA 610

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LLG+C+ H + E+ ER  ++L EL+P + G +VLL++++A+   W++V  V+ +++ +G+
Sbjct: 611 LLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGV 670

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
            K PG S IE    ++ F++ D+ HP   ++  +L  ++  +K +GY P T  V  D+D 
Sbjct: 671 VKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDE 730

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           EEKE  +  HSEKLA+AFGL+  S    IRI KNLR+C DCH+  K ISK   +EI+VRD
Sbjct: 731 EEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRD 790

Query: 645 VNRFHHFRNGVCSCGDYW 662
            +RFH+F+ G CSC DYW
Sbjct: 791 RHRFHYFKEGACSCMDYW 808



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 141/519 (27%), Positives = 230/519 (44%), Gaps = 110/519 (21%)

Query: 58  SLCKQGNLRQALDVLSIEPN--PT-QHTYELLLLSCTHHN--SLSDALNVHSHLTDNGFD 112
           SL K   L Q    L    N  PT + T  L +L    HN  +L     + S +   GF 
Sbjct: 11  SLMKLSKLNQLSSALKSTFNHKPTFKPTITLSILETHLHNCHNLKQFNRILSQMILTGFI 70

Query: 113 QDPFLVTKLI--NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
            D F  ++L+  +  S F  +D +  +FD+      ++WN + RA   +   E+ L LY+
Sbjct: 71  SDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYK 130

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M     G   D +TY  V++AC      F     GKEIH  VL+ G++  V++  TLI+
Sbjct: 131 LMVKNNVG--PDNYTYPLVVQACAVRLLEFG----GKEIHDHVLKVGFDSDVYVQNTLIN 184

Query: 231 MYA-------------------------------RFGCVMYAGFVFSQMAVKNV------ 253
           MYA                               + G V  A  +F QM  +N+      
Sbjct: 185 MYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSM 244

Query: 254 -------------------------VSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
                                    VSWSA+I+ Y +NGM  EAL +F E  M ++ +  
Sbjct: 245 IVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIE--MNANGMRL 302

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA------------ 336
           + V +VSVL ACA L+ ++ GKMIHG ++R G++S + + +AL+ MY+            
Sbjct: 303 DEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLF 362

Query: 337 -------------------RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
                              +CG +E  + +FD M ++D+VSW+++IS Y  H    + + 
Sbjct: 363 NGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLA 422

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F EM    + P     VSV+ AC+H   +++GK +   +RK  + + +V     ++D+ 
Sbjct: 423 LFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGL-KVNVILGTTLLDMY 481

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE 476
            +   +E A ++   +  E G   W +L+    ++  VE
Sbjct: 482 MKCGCVENALEVFNGME-EKGVSSWNALIIGLAVNGLVE 519


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/605 (36%), Positives = 341/605 (56%), Gaps = 38/605 (6%)

Query: 90  CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVW 149
           C    S S A  +HS +   GFD+   L   L++VY     +  A  +FD+   R    W
Sbjct: 13  CARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSW 72

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
            ++  A   A      L +   M  T  G++ D F +  +++AC  SS G+  L+ GK++
Sbjct: 73  ASILTAHNKALIPRRTLSMLNTMF-THDGLQPDHFVFACIVRAC--SSLGY--LRLGKQV 127

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           HA  +   +     + ++LIDMY + G    A  VF  +  KN VSW++MI+ YAR+G  
Sbjct: 128 HARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRK 187

Query: 270 FEALE-------------------------------LFREMIMESHDLCPNSVTMVSVLQ 298
            EA++                               LF EM  E  D+  + + + SV+ 
Sbjct: 188 CEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIV-DPLVLSSVVG 246

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
            CA LA LE GK IHG ++  G +S L + +ALV MYA+C  +   + +F  M ++DV+S
Sbjct: 247 GCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVIS 306

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           W S+I     HG   +A+ ++ EM+   + P+ ++FV +L ACSHAGLV  G+ LF SM 
Sbjct: 307 WTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMT 366

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
            ++ I PS++HY C++DLL R+  L+EA  +++ +  +P    W SLL +C  H N+E+ 
Sbjct: 367 TDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMG 426

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRK 538
            R + R+ +L+P +   Y+LL++VYA A+MW  V +V++L+ +  ++K PG S I+  + 
Sbjct: 427 VRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKD 486

Query: 539 MYSFVSVDEF-HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
              F + +   HP   ++  LL +L AEM+++GYVP T  VLYD++ +EKE+ +  HSE+
Sbjct: 487 SQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSER 546

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LAVA+GL+    G  IRI KNLR+C DCH+  KFIS    +EI+VRD  R+HHF+ G CS
Sbjct: 547 LAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCS 606

Query: 658 CGDYW 662
           C D+W
Sbjct: 607 CNDFW 611



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 167/383 (43%), Gaps = 48/383 (12%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P    +  ++ +C+    L     VH+    + F  D  + + LI++Y+     D+AR 
Sbjct: 102 QPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARA 161

Query: 137 VFD-------------------------------KTRRRTIYVWNALFRALTLAGRGEEV 165
           VFD                               +   R ++ W AL   L  +G G   
Sbjct: 162 VFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYS 221

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
             L+  M   G  I         VL + V      +LL+ GK+IH  V+  G+   + I 
Sbjct: 222 FSLFNEMRREGIDI-----VDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFIS 276

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
             L+DMYA+   ++ A  +F +M  K+V+SW+++I   A++G A EAL L+ EM++    
Sbjct: 277 NALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSR-- 334

Query: 286 LCPNSVTMVSVLQACAALAALEQGK-MIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
           + PN VT V +L AC+    + +G+ +         ++  L   + L+ + +R G L+  
Sbjct: 335 IKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEA 394

Query: 345 QCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFV---SVLG 399
           + + D +  K D  +W SL+S+   H      ++I   ++   + P  P +++   +V  
Sbjct: 395 ENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVL--DLKPEDPSTYILLSNVYA 452

Query: 400 ACSHAGLVEEGKMLFESM--RKE 420
                G V + + L  SM  RKE
Sbjct: 453 GAEMWGSVSKVRKLMSSMEVRKE 475



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 2/158 (1%)

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           LQ CA   +      +H  I++ G D    + + L+ +Y +CG +     +FD M  RD 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           VSW S+++++       + + +   M  H G+ P    F  ++ ACS  G +  GK +  
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
                      V   + ++D+  +  + +EA  + + +
Sbjct: 130 RFMLSXFCDDEVVK-SSLIDMYTKCGQPDEARAVFDSI 166


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/563 (39%), Positives = 329/563 (58%), Gaps = 13/563 (2%)

Query: 102 VHSHLTDNGFDQDPFLVTKLI--NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
           +H+ L   G    P  + +L+     S   S+  AR +FD       + +N + RA   +
Sbjct: 7   LHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADS 66

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
                +    +    T  G+  D FT+ +VLKAC       + L+ G ++H+ + + G++
Sbjct: 67  SPSFSLSLFSKM---TMAGVSPDHFTFPFVLKAC-------ARLQTGLDLHSLLFKLGFD 116

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             V++   LI  Y   G + +A   F +M  +++VSWS+MIAC+A+NG  +EAL LF+ M
Sbjct: 117 SDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRM 176

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
            +    + P+ V ++SV+ A + L  LE GK I G+I R GL+  + + +ALV M++RCG
Sbjct: 177 QLVG-TVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCG 235

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            +E    VFD M +R+V++W +LI+   VHG   +A+++F EM  HG  P  ++F  VL 
Sbjct: 236 CIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLV 295

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           ACSH GLV EG  +FES+R E+ + P  EHY CMVDLLGRA  L EA K ++ + I P  
Sbjct: 296 ACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNS 355

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
            +W +LLG+C  H  +ELAE+  +++ EL+  + G+YVLL++VY     W E   V+  +
Sbjct: 356 IIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSM 415

Query: 520 EARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579
             + + K PG S I V   ++ FV+ D  HPQFE +   L+++   +K  GY P    VL
Sbjct: 416 REKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVL 475

Query: 580 YDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKE 639
           +D++ EEKE  +  HSEKLAVAF L+      TIR+ KNLR+C DCH F K+ S    +E
Sbjct: 476 FDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFERE 535

Query: 640 ILVRDVNRFHHFRNGVCSCGDYW 662
           I++RD NRFHHF  G CSC DYW
Sbjct: 536 IIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 143/297 (48%), Gaps = 12/297 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P   T+  +L +C     L   L++HS L   GFD D ++   LI+ Y     +D A  
Sbjct: 84  SPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALK 140

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
            F++   R +  W+++       G G E L L++RM   GT ++ D      ++ + V++
Sbjct: 141 AFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGT-VKPDEV----IVLSVVSA 195

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+ GK I   + R+G    V + T L+DM++R GC+  +  VF +M  +NV++W
Sbjct: 196 ISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTW 255

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +A+I   A +G + EAL +F E  M +H   P+ VT   VL AC+    + +G  +   I
Sbjct: 256 TALINGLAVHGRSAEALRMFYE--MRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESI 313

Query: 317 LRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR-DVVSWNSLISSYGVHGY 371
               G++ +      +V +  R G L       D M  R + + W +L+ +   H Y
Sbjct: 314 RNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNY 370


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/628 (37%), Positives = 355/628 (56%), Gaps = 38/628 (6%)

Query: 67  QALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD--NGFDQDPFLVTKLINV 124
           Q L+   +E +P    Y  L+  C   N++S A  +HSH+    +   Q PFL   LI +
Sbjct: 49  QLLESRELELDPV--GYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEM 106

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
           Y     +  AR +F+    R ++ W     A +  G   E L  +RRM  +G   R DR 
Sbjct: 107 YGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGE--RPDRV 164

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           T++ +L A        + +  G+EIH      G    V + T +I MY + G +  A   
Sbjct: 165 TFSVILAAIAQMG--AAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAA 222

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREM------------------------- 279
           F ++  KN V+W+AM+  Y  +G   EALELFREM                         
Sbjct: 223 FEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQAL 282

Query: 280 -----IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
                + ++ DL P   T V+V+  CA L+AL+QG+ IH  +     D+ L V +ALV M
Sbjct: 283 DLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHM 342

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y +CG L+    VF  M  +D +SWN++ISSY  HG+  +A+ +++EM   GV P+ ++F
Sbjct: 343 YGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTF 402

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           V +L ACSH GLV +G   F  M+ +H I+PSV H+ C++DLLGR  +L EA  +++ + 
Sbjct: 403 VGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMP 462

Query: 455 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514
           I+     W SLLG+C+ H +++   RA+ ++ +  P  +G YVLL+++YAAA  W +V++
Sbjct: 463 IQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEK 522

Query: 515 VKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQ 574
           +++++ ARG++K PG+S IE+   ++ FVS D  HPQ E+++  L  +  EMK  GYVP 
Sbjct: 523 IRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPD 582

Query: 575 TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
           T  V +DL+ EEKE +++ HSEKLA+ +G +       +RI KNLR+C DCH+ TKF+S+
Sbjct: 583 TSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSR 642

Query: 635 FANKEILVRDVNRFHHFRNGVCSCGDYW 662
              ++I+VRD  RFH F NG CSC DYW
Sbjct: 643 ITGRKIVVRDAARFHLFENGSCSCRDYW 670


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/563 (39%), Positives = 329/563 (58%), Gaps = 13/563 (2%)

Query: 102 VHSHLTDNGFDQDPFLVTKLI--NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
           +H+ L   G    P  + +L+     S   S+  AR +FD       + +N + RA   +
Sbjct: 7   LHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADS 66

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
                +    +       G+  D FT+ +VLKAC       + L+ G ++H+ + + G++
Sbjct: 67  SPSFSLSLFSKM---AMAGVSPDHFTFPFVLKAC-------ARLQTGLDLHSLLFKLGFD 116

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             V++   LI  Y   G + +A  VF +M  +++VSWS+MIAC+A+NG  +EAL LF+ M
Sbjct: 117 SDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRM 176

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
            +    + P+ V ++SV+ A + L  LE GK I G+I R GL+  + + +ALV M++RCG
Sbjct: 177 QLVG-TVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCG 235

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            +E    VFD M +R+V++W +LI+   VHG   +A+++F EM  HG  P  ++F  VL 
Sbjct: 236 CIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLV 295

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           ACSH GLV EG  +FES+R E+ + P  EHY CMVDLLGRA  L EA K ++ + I P  
Sbjct: 296 ACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNS 355

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
            +W +LLG+C  H  +ELAE+  +++ EL+  + G+YVLL++VY     W E   V+  +
Sbjct: 356 IIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSM 415

Query: 520 EARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579
             + + K PG S I V   ++ FV+ D  HPQFE +   L+++   +K  GY P    VL
Sbjct: 416 REKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVL 475

Query: 580 YDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKE 639
           +D++ EEKE  +  HSEKLAVAF L+      TIR+ KNLR+C DCH F K+ S    +E
Sbjct: 476 FDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFERE 535

Query: 640 ILVRDVNRFHHFRNGVCSCGDYW 662
           I++RD NRFHHF  G CSC DYW
Sbjct: 536 IIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 144/297 (48%), Gaps = 12/297 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P   T+  +L +C     L   L++HS L   GFD D ++   LI+ Y     +D A  
Sbjct: 84  SPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALK 140

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF++   R +  W+++       G G E L L++RM   GT ++ D      ++ + V++
Sbjct: 141 VFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGT-VKPDEV----IVLSVVSA 195

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L+ GK I   + R+G    V + T L+DM++R GC+  +  VF +M  +NV++W
Sbjct: 196 ISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTW 255

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +A+I   A +G + EAL +F E  M +H   P+ VT   VL AC+    + +G  +   I
Sbjct: 256 TALINGLAVHGRSAEALRMFYE--MRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESI 313

Query: 317 LRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR-DVVSWNSLISSYGVHGY 371
               G++ +      +V +  R G L       D M  R + + W +L+ +   H Y
Sbjct: 314 RNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNY 370


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/601 (39%), Positives = 355/601 (59%), Gaps = 21/601 (3%)

Query: 73  SIEP--NP-TQHTYEL-------LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLI 122
           +I+P  NP  Q+++E        LLLS T   SL   L +H+H+   G    P +   LI
Sbjct: 8   AIKPSQNPLNQNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLI 67

Query: 123 NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSD 182
           N+YS       +  VFD+T +++   W+++  A          L+ +RRM     G+R D
Sbjct: 68  NLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRM--LNDGVRPD 125

Query: 183 RFTYTYVLKACVASSCGFSLLKH-GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
              Y    KAC     GF      GK +H   ++ GY   V + ++L+DMYA+ G +  A
Sbjct: 126 DHIYPSATKAC-----GFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDA 180

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
             +F +M  +NVVSWS MI  YA+     EAL LF++ ++E  D+  N  T  SV++ C+
Sbjct: 181 RHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDV--NDFTFSSVIRVCS 238

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
           +   LE GK+IHG  L+   DS   V SAL+++Y++CG +E    VFD +  R++  WNS
Sbjct: 239 SSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNS 298

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           ++ +   H +  +   +F+EM   G+ P+ I F+SVL ACSHAGLVE+G+  F  MR ++
Sbjct: 299 MLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLMR-DY 357

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
            I P  EHYA +VDLLGRA KL+EA  +I+ + + P   VWG+LL  CRIH + E+A   
Sbjct: 358 GIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFV 417

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS 541
           + R+ E++ +++G +VLL++ YAAA  ++E  R++++L  RG++K  G S +E   K+++
Sbjct: 418 ADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHT 477

Query: 542 FVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVA 601
           F + D  H ++ +++  L  L  EM++ GYV  T  VL  +D EEK   +  HSE+LA+A
Sbjct: 478 FTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIA 537

Query: 602 FGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
           FGLI    G  IR+ KNLR+C DCH+  KF+SK   + ++VRD NRFH F +G CSCGDY
Sbjct: 538 FGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDY 597

Query: 662 W 662
           W
Sbjct: 598 W 598


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/620 (36%), Positives = 357/620 (57%), Gaps = 42/620 (6%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E  P   T   ++ +C     L     V++ + ++G + +  +V+ L+++Y   +++D A
Sbjct: 231 EVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVA 290

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           + +FD+     + + NA+       G   E L ++  M    +G+R DR +    + +C 
Sbjct: 291 KRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM--MDSGVRPDRISMLSAISSC- 347

Query: 195 ASSCGFSLLKH---GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
                 S L++   GK  H  VLR+G+    +I   LIDMY +      A  +F +M+ K
Sbjct: 348 ------SQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 401

Query: 252 NVVSWSAMIACYARNG---MAFEALE---------------------LFREMI-----ME 282
            VV+W++++A Y  NG    A+E  E                     LF E I     M+
Sbjct: 402 TVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQ 461

Query: 283 SHD-LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           S + +  + VTM+S+  AC  L AL+  K I+ YI + G+   + + + LV M++RCG  
Sbjct: 462 SQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDP 521

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           E    +F+ +  RDV +W + I +  + G   +AI++F +MI  G+ P  ++FV  L AC
Sbjct: 522 ESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTAC 581

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SH GLV++GK +F SM K H + P   HY CMVDLLGRA  LEEA ++IED+ +EP   +
Sbjct: 582 SHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVI 641

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W SLL +CR+  NVE+A  A++++  L P   G+YVLL++VYA+A  W+++ +V+  ++ 
Sbjct: 642 WNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKE 701

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           +GL+K PG S I+++ K + F S DE HP+   + A+L  +S      G+VP    VL D
Sbjct: 702 KGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMD 761

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           +D +EK  ++  HSEKLA+A+GLI+++KG TIRI KNLR+C DCHSF KF SK  N+EI+
Sbjct: 762 VDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREII 821

Query: 642 VRDVNRFHHFRNGVCSCGDY 661
           +RD NRFH+ R G CSCGD+
Sbjct: 822 LRDNNRFHYIRQGKCSCGDF 841



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 170/313 (54%), Gaps = 11/313 (3%)

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHF---DSVDDARHVFDKTRRR-TIYVWNALFRALTL 158
           H  LT  G D D   +TKL+         +S+  A+ VF+ +    T +++N+L R    
Sbjct: 52  HRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYAS 111

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +G   E + L+ RM    +GI  D++T+ + L AC  S        +G +IH  +++ GY
Sbjct: 112 SGLCNEAILLFLRM--MNSGISPDKYTFPFGLSACAKSRAK----GNGIQIHGLIVKMGY 165

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
              + +  +L+  YA  G +  A  VF +M+ +NVVSW++MI  YAR   A +A++LF  
Sbjct: 166 AKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFR 225

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M+ +  ++ PNSVTMV V+ ACA L  LE G+ ++ +I   G++    +VSALV MY +C
Sbjct: 226 MVRD-EEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKC 284

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
             +++ + +FD     ++   N++ S+Y   G   +A+ +F  M+  GV P  IS +S +
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAI 344

Query: 399 GACSHAGLVEEGK 411
            +CS    +  GK
Sbjct: 345 SSCSQLRNILWGK 357



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 199/438 (45%), Gaps = 46/438 (10%)

Query: 53  NELIQSLCKQGNLRQA----LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI+     G   +A    L +++   +P ++T+   L +C    +  + + +H  +  
Sbjct: 103 NSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVK 162

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+ +D F+   L++ Y+    +D AR VFD+   R +  W ++          ++ ++L
Sbjct: 163 MGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDL 222

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           + RM      +R +  T   V   CV S+C     L+ G++++A +   G      +++ 
Sbjct: 223 FFRM------VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSA 276

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+DMY +   +  A  +F +    N+   +AM + Y R G+  EAL +F   +M    + 
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFN--LMMDSGVR 334

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+ ++M+S + +C+ L  +  GK  HGY+LR G +S   + +AL+ MY +C + +    +
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM------------------------- 382
           FD M  + VV+WNS+++ Y  +G    A + F+ M                         
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAI 454

Query: 383 -------IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
                     GV+   ++ +S+  AC H G ++  K ++  + K + I+  V     +VD
Sbjct: 455 EVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEK-NGIQLDVRLGTTLVD 513

Query: 436 LLGRANKLEEAAKIIEDL 453
           +  R    E A  I   L
Sbjct: 514 MFSRCGDPESAMSIFNSL 531



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 140/293 (47%), Gaps = 8/293 (2%)

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
           VL L   +  T T  +      +   KA  +S      +   K  H S+ + G +  V  
Sbjct: 7   VLHLSPMVLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVST 66

Query: 225 MTTLIDMYARFGC---VMYAGFVF-SQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
           +T L+      G    + +A  VF +  +      ++++I  YA +G+  EA+ LF  M+
Sbjct: 67  ITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMM 126

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
             +  + P+  T    L ACA   A   G  IHG I++ G    L V ++LV  YA CG+
Sbjct: 127 --NSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGE 184

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY-HGVSPSPISFVSVLG 399
           L+  + VFD M +R+VVSW S+I  Y    +   A+ +F  M+    V+P+ ++ V V+ 
Sbjct: 185 LDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVIS 244

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           AC+    +E G+ ++  +R    I  +    + +VD+  + N ++ A ++ ++
Sbjct: 245 ACAKLEDLETGEKVYAFIRNSG-IEVNDLMVSALVDMYMKCNAIDVAKRLFDE 296


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/602 (38%), Positives = 348/602 (57%), Gaps = 22/602 (3%)

Query: 67  QALDVLSIEPNPTQHTYELLLLSCTHHNSLSD--ALNVHSHLTDNGFDQDPFLVTKLINV 124
           + L + ++ PNP      LL+  C     L    A  + SH  D  F+      TKLIN 
Sbjct: 20  KPLKIDTVNPNPPNPI--LLISKCNSERELMQIQAYAIKSHQEDVSFN------TKLINF 71

Query: 125 YSHF---DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
            +      S+  ARH+FD      I ++N++ R  + +    EV  L+  +      +  
Sbjct: 72  CTESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEI--LEDDLLP 129

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
           D +T+  +LKAC  +      L+ G+++H   ++ G +  V++  TLI+MY     V  A
Sbjct: 130 DNYTFPSLLKACAVAKA----LEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAA 185

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
             VF ++    VV ++AMI  YAR     EAL LFREM  +  +L PN +T++SVL +CA
Sbjct: 186 RCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREM--QGKNLKPNEITLLSVLSSCA 243

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            L +L+ GK IH Y  + G    + V +AL+ M+A+CG L+    +F++M  +D  +W++
Sbjct: 244 LLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSA 303

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +I +Y  HG    ++ +F+ M    V P  I+F+ +L ACSH GLVEEG+  F  M  E 
Sbjct: 304 MIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEF 363

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
            I PS++HY  MVDLLGRA  LE+A + I+ L I P P +W  LL +C  H N+ELAE+ 
Sbjct: 364 GIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKV 423

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS 541
           S+R+ EL+ ++ G+YV+L+++YA    W+ V  ++++++ R   KVPG S IEV   ++ 
Sbjct: 424 SERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHE 483

Query: 542 FVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY-DLDAEEKERIVLGHSEKLAV 600
           F S D       +LH  L  +  E+K  GYVP T +V++ D+  +EKE  +  HSEKLA+
Sbjct: 484 FFSGDGVKSATTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAI 543

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           AFGL+NT  G TIR+ KNLR+C DCHS  K IS    +++++RDV RFHHF +G CSC D
Sbjct: 544 AFGLLNTPPGTTIRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRD 603

Query: 661 YW 662
           +W
Sbjct: 604 FW 605


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 188/370 (50%), Positives = 268/370 (72%)

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           M  +L+ACA++AALEQGK +H  I++ G +  + V + LV MY +CG++E  Q VF  + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
           + DV SWN++IS    HG G +A+ +F++M+  GV P+ I+FV VL  CSHAGLV+EG+ 
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            F+SM ++H I P  EHY+CMVDL GRA  L+EA   I  + +EP   VWGSLLG+CR+H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
            N+ELAERA ++L EL P N G YVLL+++YAAA  WD+  +V+++++ R ++K PG S 
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 533 IEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVL 592
           IEV+ K++ F+  D  HPQ E+++  L  L+ +MK  GY+P T  VL+D++ E+KE I+ 
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILG 300

Query: 593 GHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652
            HSEKLA+AFG+I+T  G TIR+ KNLR+C DCH+ TKFIS+  ++EI++RD +RFHHF+
Sbjct: 301 HHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFK 360

Query: 653 NGVCSCGDYW 662
           +G CSCGDYW
Sbjct: 361 DGQCSCGDYW 370



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 96/184 (52%), Gaps = 8/184 (4%)

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           +L+AC +     + L+ GK++HA +++ G+   V +   L+DMY + G +  A  VFS++
Sbjct: 4   ILRACAS----VAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKL 59

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
              +V SW+AMI+  A++G   EA+ LF +M+     + PN +T V VL  C+    +++
Sbjct: 60  LEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTG--VKPNQITFVVVLSGCSHAGLVDE 117

Query: 309 GKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS-WNSLISSY 366
           G+     + R  G+       S +V ++ R G L+      + M      S W SL+ + 
Sbjct: 118 GRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGAC 177

Query: 367 GVHG 370
            VHG
Sbjct: 178 RVHG 181



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 15/222 (6%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L +C    +L     VH+ +   GF+ D  +   L+++Y     ++DA+ VF K     
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  WNA+   L   G G+E + L+ +M    TG++ ++ T+  VL  C  +     L+  
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQM--LQTGVKPNQITFVVVLSGCSHA----GLVDE 117

Query: 206 GKEIHASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMIACY 263
           G+    S+ R HG +      + ++D++ R GC+  A    +QM V+ N   W +++   
Sbjct: 118 GRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGAC 177

Query: 264 ARNG---MAFEALELFREMIMESHDLCPNSVTMVSVLQACAA 302
             +G   +A  A+E   E+  E+    P +  ++S + A A 
Sbjct: 178 RVHGNIELAERAVEQLIELTPEN----PGTYVLLSNIYAAAG 215


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/595 (37%), Positives = 355/595 (59%), Gaps = 17/595 (2%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
           S+EP+ T   Y  LL  CT    L     VH+HL ++ F  D  +   ++ +Y+   S++
Sbjct: 86  SLEPDRT--IYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLE 143

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEV---LELYRRMNGTGTGIRSDRFTYTYV 189
            AR VFD+   + +  W ++    +  G        L L+  M     G+R + F  + +
Sbjct: 144 IARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEM--VRDGLRPNEFALSSL 201

Query: 190 LKAC-VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           +K C    SC       GK+IH    ++G+   V + ++L+DMYAR G +  +  VF ++
Sbjct: 202 VKCCGFLGSC-----VDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDEL 256

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             KN VSW+A+I+ +AR G   EAL LF +M  E         T  ++L + +   +LEQ
Sbjct: 257 ESKNEVSWNALISGFARKGEGEEALGLFVKMQREG--FGATEFTYSALLCSSSTTGSLEQ 314

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           GK +H ++++ G   +  V + L+ MYA+ G +   + VFD + K DVVS NS++  Y  
Sbjct: 315 GKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQ 374

Query: 369 HGYGGKAIQIFKEM-IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           HG G +A+++F+EM ++  + P+ I+F+SVL ACSHAGL++EG   FE M+K + + P +
Sbjct: 375 HGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK-YGLEPKL 433

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
            HY  +VDL GRA  L++A   IE++ IEP   +WG+LLG+ ++H N E+   A++++ E
Sbjct: 434 SHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLE 493

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           L+P   G + LL+++YA+A  W +V +V++ ++  GL+K P  S +E++  ++ F + D 
Sbjct: 494 LDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDI 553

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
            HPQ  +++ +  NL+ ++KE GYVP T  V   +D +EKE  +  HSEKLA+AF L+NT
Sbjct: 554 SHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNT 613

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             G  IRI KN+R+C DCHS  K++S    +EI+VRD NRFHHFR+G CSC DYW
Sbjct: 614 KPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 96/178 (53%), Gaps = 4/178 (2%)

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           ++ +  L P+      +L+ C  L  L+QGK++H +++     + L + ++++ MYA+CG
Sbjct: 81  LINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCG 140

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK---AIQIFKEMIYHGVSPSPISFVS 396
            LE+ + VFD M  +DVV+W S+I+ Y   GY      A+ +F EM+  G+ P+  +  S
Sbjct: 141 SLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSS 200

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           ++  C   G   +GK +     K +  + +V   + +VD+  R  +L E+  + ++L 
Sbjct: 201 LVKCCGFLGSCVDGKQIHGCCWK-YGFQENVFVGSSLVDMYARCGELRESRLVFDELE 257


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/581 (38%), Positives = 338/581 (58%), Gaps = 54/581 (9%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           T ++  Y+    ++ AR  FD    R++  WNA+       G  EEVL L+  M     G
Sbjct: 198 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEM--VNAG 255

Query: 179 IRSDRFTYTYVLKACVASS---CGFSLLK--HGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
           I  D  T+  V+ AC +        SL++  H K+I  +           + T L+DMYA
Sbjct: 256 IEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCF---------VRTALLDMYA 306

Query: 234 RFGCVMYAGFVFSQMAV--------------------------------KNVVSWSAMIA 261
           + G +  A  +F ++                                  +NVV+W++MIA
Sbjct: 307 KCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIA 366

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            YA+NG +  A+ELF+EMI  +  L P+ VTMVSV+ AC  L ALE G  +  ++    +
Sbjct: 367 GYAQNGQSAMAIELFKEMIT-AKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQI 425

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
              +   +A++ MY+RCG +E  + VF  M  RDVVS+N+LIS +  HG+G +AI +   
Sbjct: 426 KLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMST 485

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   G+ P  ++F+ VL ACSHAGL+EEG+ +FES++      P+++HYACMVDLLGR  
Sbjct: 486 MKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVG 540

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
           +LE+A + +E + +EP   V+GSLL + RIH  VEL E A+ +LFELEP N+GN++LL++
Sbjct: 541 ELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSN 600

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YA+A  W +V+R++  ++  G++K  G S +E   K++ F+  D  H + + ++ LLI 
Sbjct: 601 IYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIE 660

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           L  +M+E GY+     VL D++ EEKE IV  HSEKLA+ + L+ +  G  IR+ KNLR+
Sbjct: 661 LRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRV 720

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCH+  K ISK   + I+VRD NRFH F +G+CSC DYW
Sbjct: 721 CWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 191/450 (42%), Gaps = 112/450 (24%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV-FDKTRRRTIYVWNALFRALTLAG 160
           +H+ +  N      + V  LIN  +   +     H+ F+ T    ++V+ ++ R  +   
Sbjct: 20  LHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYSHLQ 79

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
              +V+ ++  M G G  +R D F Y  ++K+      GF         HA VL+ G+  
Sbjct: 80  DHAKVVLMFEHMQGCG--VRPDAFVYPILIKSAGNGGIGF---------HAHVLKLGHGS 128

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQ--------------------------------- 247
              +   +IDMYAR G + +A  VF +                                 
Sbjct: 129 DAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDV 188

Query: 248 MAVKNVVSWSAMIACYAR-------------------------------NGMAFEALELF 276
           M  +NV++W+AM+  YA+                               NG+A E L LF
Sbjct: 189 MPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLF 248

Query: 277 REMIMESHDLCPNSVTMVSVLQACAA-----LAA-----LEQGKMIHGYILRRGLDSILP 326
            EM+  +  + P+  T V+V+ AC++     LAA     L Q ++     +R  L  +  
Sbjct: 249 DEMV--NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYA 306

Query: 327 ----------------------VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
                                   +A+++ Y R G L+  + +F+ M  R+VV+WNS+I+
Sbjct: 307 KCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIA 366

Query: 365 SYGVHGYGGKAIQIFKEMIY-HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
            Y  +G    AI++FKEMI    ++P  ++ VSV+ AC H G +E G  +   +  E+ I
Sbjct: 367 GYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFL-TENQI 425

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           + S+  +  M+ +  R   +E+A ++ +++
Sbjct: 426 KLSISGHNAMIFMYSRCGSMEDAKRVFQEM 455


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/575 (37%), Positives = 346/575 (60%), Gaps = 14/575 (2%)

Query: 90  CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR-RTIYV 148
           C+    L+    +H  +  NG++    + T L+  YS   SVD+A  +F        +  
Sbjct: 316 CSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVT 375

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           W A+          E+ ++L+ +M  +  G+R + FTY+ VL    +S     LL    +
Sbjct: 376 WTAMIGGFVQNNNNEKAVDLFCQM--SREGVRPNHFTYSTVLAGKPSS-----LLS---Q 425

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           +HA +++  Y  +  + T L+D Y + G V+ +  VF  +  K++V+WSAM+   A+   
Sbjct: 426 LHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRD 485

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA-LEQGKMIHGYILRRGLDSILPV 327
           + +A+E+F +++ E   + PN  T  SV+ AC++ AA +E GK IH   ++ G  + L V
Sbjct: 486 SEKAMEVFIQLVKEG--VKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCV 543

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
            SAL+TMY++ G +E  + VF   ++RD+VSWNS+I+ YG HG   KA+++F+ M   G+
Sbjct: 544 SSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGL 603

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
               ++F+ VL AC+HAGLVEEG+  F  M K++ I   +EHY+CMVDL  RA   ++A 
Sbjct: 604 PLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAM 663

Query: 448 KIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507
            II  +     P +W +LL +CR+H N+EL + A+++L  L+P +A  YVLL++++A A 
Sbjct: 664 DIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAG 723

Query: 508 MWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK 567
            W+E   V++L++ R ++K  G S IE+K +++SF++ D  HP  + ++A L  LS ++K
Sbjct: 724 NWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLK 783

Query: 568 EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHS 627
           + GY P T  V +D++ E KE I+  HSE+LA+A+GLI    G  I+I KNLR+C DCH+
Sbjct: 784 DMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHN 843

Query: 628 FTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             + IS    + ++VRD NRFHHF+ GVCSCG YW
Sbjct: 844 VIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 166/356 (46%), Gaps = 31/356 (8%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  +FD+T  + I  +N L    +      E L L++ ++ +G G+  D  T +  LK C
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGV--DGLTLSCALKVC 114

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                 F  +  G+++H   L+ G+   V + T+L+DMY +         +F +M +KNV
Sbjct: 115 ---GVLFDQVV-GRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNV 170

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+++++ YARNG+  E + L  +M ME   + PN  T  +VL A A  + +E G  +H
Sbjct: 171 VSWTSLLSGYARNGLNDEVIHLINQMQMEG--VNPNGFTFATVLGALADESIIEGGVQVH 228

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             I++ G +    V +AL+ MY +   +   + VFD M  RD V+WN +I  Y   G+  
Sbjct: 229 AMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYL 288

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACS-----------HAGLVEEGKMLFESMRKEHM 422
           +  Q+F  M   GV  S   F + L  CS           H G+V+ G    + +R   M
Sbjct: 289 EGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALM 348

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
           +  S            + + ++EA K+            W +++G    + N E A
Sbjct: 349 VTYS------------KCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKA 392



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 163/339 (48%), Gaps = 14/339 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           NP   T+  +L +    + +   + VH+ +  NGF+   F+   LI +Y   + V DA  
Sbjct: 202 NPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEA 261

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD    R    WN +       G   E  +++ RM     G++  R  +   LK C   
Sbjct: 262 VFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMR--LAGVKLSRTVFCTALKLCSQQ 319

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM-AVKNVVS 255
                 L   K++H  V+++GY     I T L+  Y++   V  A  +FS   A  NVV+
Sbjct: 320 ----RELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVT 375

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+AMI  + +N    +A++LF +M  E   + PN  T  +VL A    + L Q   +H  
Sbjct: 376 WTAMIGGFVQNNNNEKAVDLFCQMSREG--VRPNHFTYSTVL-AGKPSSLLSQ---LHAQ 429

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           I++   + +  V +AL+  Y + G +     VF  +  +D+V+W+++++         KA
Sbjct: 430 IIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKA 489

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGAC-SHAGLVEEGKML 413
           +++F +++  GV P+  +F SV+ AC S A  VE GK +
Sbjct: 490 MEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQI 528



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 144/300 (48%), Gaps = 9/300 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH     +GF +D  + T L+++Y   +  +D R +FD+   + +  W +L       G 
Sbjct: 126 VHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGL 185

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            +EV+ L  +M     G+  + FT+  VL A        S+++ G ++HA ++++G+   
Sbjct: 186 NDEVIHLINQMQ--MEGVNPNGFTFATVLGALADE----SIIEGGVQVHAMIVKNGFEFT 239

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
             +   LI MY +   V  A  VF  M V++ V+W+ MI  YA  G   E  ++F  M +
Sbjct: 240 TFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRL 299

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
               L  +     + L+ C+    L   K +H  +++ G +    + +AL+  Y++C  +
Sbjct: 300 AGVKL--SRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSV 357

Query: 342 ELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +    +F   D   +VV+W ++I  +  +    KA+ +F +M   GV P+  ++ +VL  
Sbjct: 358 DEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAG 417



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 93/171 (54%), Gaps = 2/171 (1%)

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
           YA  +F +  +K++  ++ ++  ++RN    EAL LF+++   S  L  + +T+   L+ 
Sbjct: 56  YAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDL--HSSGLGVDGLTLSCALKV 113

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           C  L     G+ +H   L+ G    + V ++LV MY +    E G+ +FD M  ++VVSW
Sbjct: 114 CGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSW 173

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
            SL+S Y  +G   + I +  +M   GV+P+  +F +VLGA +   ++E G
Sbjct: 174 TSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG 224


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/590 (37%), Positives = 347/590 (58%), Gaps = 15/590 (2%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDN-GFDQDPFLVTKLINVYSHFDSVDDARHV 137
           T   Y  LL +C    SL   + + S + +N     +P L++KLI ++S    +D AR +
Sbjct: 130 TPEAYTDLLHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKI 189

Query: 138 FDKTRRRTIY---VWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           FD     ++    VW A+    +  G   + L +Y  M    + I    F+ +  LKACV
Sbjct: 190 FDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDM--LCSFIEPGNFSISVALKACV 247

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
                   L+ G+ IHA +++        +   L+ +Y   G    A  VF  M+ +NVV
Sbjct: 248 ----DLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVV 303

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           +W+++I+  ++     E   LFR+M  E      +  T+ ++L AC+ +AAL  GK IH 
Sbjct: 304 TWNSLISVLSKKVRVHEMFNLFRKMQEEMIGF--SWATLTTILPACSRVAALLTGKEIHA 361

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            IL+      +P++++L+ MY +CG++E  + VFD M  +D+ SWN +++ Y ++G   +
Sbjct: 362 QILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEE 421

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
            I +F+ MI  GV+P  I+FV++L  CS  GL E G  LFE M+ E  + P++EHYAC+V
Sbjct: 422 VINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLV 481

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           D+LGRA K++EA K+IE +  +P   +WGSLL SCR+H NV + E A+K LF LEP N G
Sbjct: 482 DILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPG 541

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD--EFHPQF 552
           NYV+++++YA A MWD V +++ +++ RG++K  G S ++VK K+  FV+    EF    
Sbjct: 542 NYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNS- 600

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
           ++   +   L   +++ GY P T VVL+D+D E K   V GHSE+LA  + LI+T +G  
Sbjct: 601 DEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVP 660

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IRITKNLR+C DCHS+ K +S+   + I++RD  RFHHF +G+CSC DYW
Sbjct: 661 IRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 710



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 142/316 (44%), Gaps = 14/316 (4%)

Query: 61  KQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPF 116
           + G+ R AL    D+L     P   +  + L +C     L     +H+ +       D  
Sbjct: 213 RNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQV 272

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           +   L+ +Y      DDAR VFD    R +  WN+L   L+   R  E+  L+R+M    
Sbjct: 273 VYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEM 332

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
            G      T T +L AC       + L  GKEIHA +L+      V ++ +L+DMY + G
Sbjct: 333 IGF--SWATLTTILPAC----SRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCG 386

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            V Y+  VF  M  K++ SW+ M+ CYA NG   E + LF  MI     + P+ +T V++
Sbjct: 387 EVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMI--ESGVAPDGITFVAL 444

Query: 297 LQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           L  C+     E G  +         +   L   + LV +  R GK++    V + M  + 
Sbjct: 445 LSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKP 504

Query: 356 VVS-WNSLISSYGVHG 370
             S W SL++S  +HG
Sbjct: 505 SASIWGSLLNSCRLHG 520


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/581 (38%), Positives = 337/581 (58%), Gaps = 30/581 (5%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD---SVDDARHVFDKTR 142
           L+  CT   +L +   + ++     +  +  ++TK IN  +      S++ A  +FD+  
Sbjct: 32  LIPKCT---TLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQIT 88

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           +  I ++N + R              Y R+N        D        + C+        
Sbjct: 89  QPNIVLFNTMARG-------------YARLN--------DPLRMITHFRRCLRLVSKVKA 127

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L  GK++H   ++ G +  ++++ TLI+MY   G +  +  VF ++    VV+++A+I  
Sbjct: 128 LAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMS 187

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
            ARN  A EAL LFRE+  +   L P  VTM+ VL +CA L +L+ G+ +H Y+ + G D
Sbjct: 188 LARNNRANEALALFREL--QEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFD 245

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             + V + L+ MYA+CG L+    VF  M KRD  +W+++I +Y  HG G +AI +  EM
Sbjct: 246 RYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEM 305

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
               V P  I+F+ +L ACSH GLVEEG   F  M  E+ I PS++HY CMVDLLGRA +
Sbjct: 306 KKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGR 365

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           L+EA K I++L I+P P +W +LL +C  H NVE+ +R  +R+FEL+ ++ G+YV+ +++
Sbjct: 366 LDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNL 425

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
            A    WD+V  +++ +  +G  K+PG S IEV   ++ F + +  H     LH  L  L
Sbjct: 426 CARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDEL 485

Query: 563 SAEMKEKGYVPQTKVVLY-DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
             E+K  GYVP T +V Y D++ EEKE I+  HSEKLA+ FGL+NT  G TIR+ KNLR+
Sbjct: 486 VKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 545

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCH+  KFIS    ++I++RDV RFHHF++G CSCGDYW
Sbjct: 546 CGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 104/264 (39%), Gaps = 45/264 (17%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I SL +     +AL    ++  I   PT  T  ++L SC    SL     +H ++  
Sbjct: 182 NAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKK 241

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GFD+   + T LI++Y+   S+DDA +VF    +R    W+A+  A    G G + + +
Sbjct: 242 YGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISM 301

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
              M      ++ D  T+  +L AC                        +NG+V      
Sbjct: 302 LNEMK--KEKVQPDEITFLGILYAC-----------------------SHNGLV------ 330

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
                  G   + G       V ++  +  M+    R G   EA +   E+ ++     P
Sbjct: 331 -----EEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIK-----P 380

Query: 289 NSVTMVSVLQACAALAALEQGKMI 312
             +   ++L AC+    +E GK +
Sbjct: 381 TPILWRTLLSACSTHGNVEMGKRV 404


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/634 (35%), Positives = 350/634 (55%), Gaps = 63/634 (9%)

Query: 86   LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
            +L +C    +L+ A  +H ++   G D D  L   LI++YS    ++ AR VFD    R 
Sbjct: 781  VLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRN 840

Query: 146  -----------------------------------IYVWNALFRALTLAGRGEEVLELYR 170
                                               I  WN L     L G  EEVL + +
Sbjct: 841  TSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQ 900

Query: 171  RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            RM G G   + +  + T VL+A   S  GF  L  GKE H  VLR+G++  V++ T+LID
Sbjct: 901  RMQGEG--FKPNSSSMTSVLQAI--SELGF--LNMGKETHGYVLRNGFDCDVYVGTSLID 954

Query: 231  MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES--HDLC- 287
            MY +   +  A  VF  M  +N+ +W+++++ Y+  GM  +AL L  +M  E    DL  
Sbjct: 955  MYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVT 1014

Query: 288  -------------------PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
                               PNS ++  +L+ACA+L+ L++GK IH   +R G    + V 
Sbjct: 1015 WNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVA 1074

Query: 329  SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
            +AL+ MY++   L+    VF  +  + + SWN +I  + + G G +AI +F EM   GV 
Sbjct: 1075 TALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG 1134

Query: 389  PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
            P  I+F ++L AC ++GL+ EG   F+SM  ++ I P +EHY CMVDLLGRA  L+EA  
Sbjct: 1135 PDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWD 1194

Query: 449  IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
            +I  + ++P   +WG+LLGSCRIH N+  AE A+K LF+LEP N+ NY+L+ ++Y+  + 
Sbjct: 1195 LIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNR 1254

Query: 509  WDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKE 568
            W+++  ++ L+ A G++     S I++ ++++ F S ++ HP   +++  L  L +EMK+
Sbjct: 1255 WEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKK 1314

Query: 569  KGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSF 628
             GYVP    V  ++D  EK++I+L H+EKLA+ +GLI    GE IR+ KN R+C DCHS 
Sbjct: 1315 LGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSA 1374

Query: 629  TKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             K+IS    +E+ +RD  RFHHFR G CSC D+W
Sbjct: 1375 AKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 167/368 (45%), Gaps = 45/368 (12%)

Query: 81   HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
              Y + L +CT    +   + +H  L   GFD D +L   L+N Y     ++ A  VF +
Sbjct: 675  EVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHE 734

Query: 141  TRRRTIYVWNALFRALTLAGRGEEV---LELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
                   +WN    A+ L  + E++   +EL+R+M    + ++++  T   VL+AC    
Sbjct: 735  MPNPEALLWN---EAIILNLQSEKLQKGVELFRKMQ--FSFLKAETATIVRVLQAC---- 785

Query: 198  CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                 L   K+IH  V R G +  V +   LI MY++ G +  A  VF  M  +N  SW+
Sbjct: 786  GKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWN 845

Query: 258  AMIACYARNGMAFEALELFREM---------------------------------IMESH 284
            +MI+ YA  G   +A  LF E+                                  M+  
Sbjct: 846  SMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE 905

Query: 285  DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
               PNS +M SVLQA + L  L  GK  HGY+LR G D  + V ++L+ MY +   L   
Sbjct: 906  GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSA 965

Query: 345  QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
            Q VFD+M  R++ +WNSL+S Y   G    A+++  +M   G+ P  +++  ++   +  
Sbjct: 966  QAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMW 1025

Query: 405  GLVEEGKM 412
            G   +  M
Sbjct: 1026 GCARKAFM 1033



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 150/301 (49%), Gaps = 9/301 (2%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL-TLAGRGEEVLELYRRMNGTGTGI 179
           LI+ Y  F     A  VF     R    WN+      + AG    VLE+++ ++G G   
Sbjct: 613 LISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVF 672

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
            S+   Y+  LK C         +  G EIH  +++ G++  V++   L++ Y R   + 
Sbjct: 673 DSE--VYSVALKTCTRVMD----IWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLE 726

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
            A  VF +M     + W+  I    ++    + +ELFR+M  +   L   + T+V VLQA
Sbjct: 727 KANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKM--QFSFLKAETATIVRVLQA 784

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           C  + AL   K IHGY+ R GLDS + + + L++MY++ GKLEL + VFD M+ R+  SW
Sbjct: 785 CGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSW 844

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           NS+ISSY   G+   A  +F E+    + P  +++  +L      G  EE   + + M+ 
Sbjct: 845 NSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQG 904

Query: 420 E 420
           E
Sbjct: 905 E 905



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 151/328 (46%), Gaps = 28/328 (8%)

Query: 64   NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
            N+ Q +     +PN +  T   +L + +    L+     H ++  NGFD D ++ T LI+
Sbjct: 897  NILQRMQGEGFKPNSSSMTS--VLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLID 954

Query: 124  VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
            +Y    S+  A+ VFD  + R I+ WN+L    +  G  E+ L L  +M     GI+ D 
Sbjct: 955  MYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQME--KEGIKPDL 1012

Query: 184  FTYTYVLKA-------------------CVASSCG-FSLLKHGKEIHASVLRHGYNGIVH 223
             T+  ++                     C+  +C   SLL+ GKEIH   +R+G+   V 
Sbjct: 1013 VTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVF 1072

Query: 224  IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
            + T LIDMY++   +  A  VF ++  K + SW+ MI  +A  G+  EA+ +F E  M+ 
Sbjct: 1073 VATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNE--MQK 1130

Query: 284  HDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
              + P+++T  ++L AC     + +G K     I    +   L     +V +  R G L+
Sbjct: 1131 VGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLD 1190

Query: 343  LGQCVFDHMD-KRDVVSWNSLISSYGVH 369
                +   M  K D   W +L+ S  +H
Sbjct: 1191 EAWDLIHTMPLKPDATIWGALLGSCRIH 1218



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 11/197 (5%)

Query: 78   PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
            P   +   LL +C   + L     +H     NGF +D F+ T LI++YS   S+ +A  V
Sbjct: 1034 PNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKV 1093

Query: 138  FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
            F + + +T+  WN +     + G G+E + ++  M   G G   D  T+T +L AC  S 
Sbjct: 1094 FRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG--PDAITFTALLSACKNS- 1150

Query: 198  CGFSLLKHGKEIHASVLRHGYNGIVHI--MTTLIDMYARFGCVMYAGFVFSQMAVK-NVV 254
                L+  G +   S++   Y  +  +     ++D+  R G +  A  +   M +K +  
Sbjct: 1151 ---GLIGEGWKYFDSMITD-YRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDAT 1206

Query: 255  SWSAMI-ACYARNGMAF 270
             W A++ +C     + F
Sbjct: 1207 IWGALLGSCRIHKNLXF 1223


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/611 (35%), Positives = 348/611 (56%), Gaps = 9/611 (1%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N L+ S CK   L  A  +    P     T+  +L +    + +     +HS +    F 
Sbjct: 183 NTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFV 242

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            + F+   L++ YS  DSV DAR +FD+   +    +N +       G+ +   +L+R +
Sbjct: 243 WNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFREL 302

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
             T      DR  + +     +AS+      + G++IHA  +    +  + +  +L+DMY
Sbjct: 303 QFTAF----DRKQFPFATMLSIASNT--LDWEMGRQIHAQTIVTTADSEILVGNSLVDMY 356

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           A+ G    A  +F+ +  ++ V W+AMI+ Y + G   E L+LF +M   S  +  +  T
Sbjct: 357 AKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQAS--VIADQAT 414

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
             S+L+A A++A+L  GK +H +I++ G  S +   SAL+ +YA+CG ++     F  M 
Sbjct: 415 FASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP 474

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
            R++VSWN++IS+Y  +G     ++ FKEM+  G+ P  +SF+ VL ACSH+GLVEEG  
Sbjct: 475 DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLW 534

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            F SM + + + P  EHYA +VD+L R+ +  EA K++ ++ I+P   +W S+L +CRIH
Sbjct: 535 HFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIH 594

Query: 473 CNVELAERASKRLFELEP-TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
            N ELA RA+ +LF +E   +A  YV ++++YAAA  W+ V +V + +  RG++K+P  S
Sbjct: 595 KNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYS 654

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            +E+K + + F + D  HPQ E++   +  L+  M+E GY P T   L++ D + K   +
Sbjct: 655 WVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESL 714

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
             HSE+LA+AF LI+T +G  I + KNLR C DCH+  K ISK   +EI VRD  RFHHF
Sbjct: 715 KYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHF 774

Query: 652 RNGVCSCGDYW 662
           R+G CSCGD+W
Sbjct: 775 RDGFCSCGDFW 785



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/399 (21%), Positives = 161/399 (40%), Gaps = 75/399 (18%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           +I+ Y    ++ +AR +FD    RT   W  L    +   + +E  EL+ +M   GT   
Sbjct: 84  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGT--E 141

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR------ 234
            D  T+  +L  C     G  +     ++   +++ GY+  + +  TL+D Y +      
Sbjct: 142 PDYVTFVTLLSGCNGHEMGNQI----TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDL 197

Query: 235 ---------------FGCVMYAG--------------FVFSQMAVKNVVSWSAMIACYAR 265
                          F  V+ A               FV     V NV   +A++  Y++
Sbjct: 198 ACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSK 257

Query: 266 --------------------------NGMAFE-----ALELFREMIMESHDLCPNSVTMV 294
                                     +G A++     A +LFRE+   + D         
Sbjct: 258 HDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFD--RKQFPFA 315

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           ++L   +     E G+ IH   +    DS + V ++LV MYA+CGK E  + +F ++  R
Sbjct: 316 TMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHR 375

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
             V W ++IS+Y   G+  + +Q+F +M    V     +F S+L A +    +  GK L 
Sbjct: 376 SAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLH 435

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
             + K   +  +V   + ++D+  +   +++A +  +++
Sbjct: 436 SFIIKSGFM-SNVFSGSALLDVYAKCGSIKDAVQTFQEM 473



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 29/184 (15%)

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           I A +++ G++         +  + + G +  A  +F +M  KN VS + MI+ Y ++G 
Sbjct: 34  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 93

Query: 269 AFEALELFREMI-----------------------------MESHDLCPNSVTMVSVLQA 299
             EA +LF  M+                             M+     P+ VT V++L  
Sbjct: 94  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 153

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           C       Q   +   I++ G DS L V + LV  Y +  +L+L   +F  M + D  ++
Sbjct: 154 CNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTF 213

Query: 360 NSLI 363
            +++
Sbjct: 214 AAVL 217


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/605 (36%), Positives = 341/605 (56%), Gaps = 38/605 (6%)

Query: 90  CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVW 149
           C    S S A  +HS +   GFD+   L   L++VY     +  A  +FD+   R    W
Sbjct: 13  CARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSW 72

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
            ++  A   A      L +   M  T  G++ D F +  +++AC  SS G+  L+ GK++
Sbjct: 73  ASILTAHNKALIPRRTLSMLNTM-FTHDGLQPDHFVFACIVRAC--SSLGY--LRLGKQV 127

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           HA  +   +     + ++LIDMY + G    A  VF  +  KN VSW++MI+ YAR+G  
Sbjct: 128 HARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRK 187

Query: 270 FEALE-------------------------------LFREMIMESHDLCPNSVTMVSVLQ 298
            EA++                               LF EM  E  D+  + + + SV+ 
Sbjct: 188 CEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIV-DPLVLSSVVG 246

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
            CA LA LE GK IHG ++  G +S L + +ALV MYA+C  +   + +F  M ++DV+S
Sbjct: 247 GCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVIS 306

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           W S+I     HG   +A+ ++ EM+   + P+ ++FV +L ACSHAGLV  G+ LF SM 
Sbjct: 307 WTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMT 366

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
            ++ I PS++HY C++DLL R+  L+EA  +++ +  +P    W SLL +C  H N+E+ 
Sbjct: 367 TDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMG 426

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRK 538
            R + R+ +L+P +   Y+LL++VYA A+MW  V +V++L+ +  ++K PG S I+  + 
Sbjct: 427 VRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKD 486

Query: 539 MYSFVSVDEF-HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
              F + +   HP   ++  LL +L AEM+++GYVP T  VLYD++ +EKE+ +  HSE+
Sbjct: 487 SQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSER 546

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LAVA+GL+    G  IRI KNLR+C DCH+  KFIS    +EI+VRD  R+HHF+ G CS
Sbjct: 547 LAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCS 606

Query: 658 CGDYW 662
           C D+W
Sbjct: 607 CNDFW 611



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 167/383 (43%), Gaps = 48/383 (12%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P    +  ++ +C+    L     VH+    + F  D  + + LI++Y+     DDAR 
Sbjct: 102 QPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARA 161

Query: 137 VFD-------------------------------KTRRRTIYVWNALFRALTLAGRGEEV 165
           VFD                               +   R ++ W AL   L  +G G   
Sbjct: 162 VFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYS 221

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
             L+  M   G  I         VL + V      +LL+ GK+IH  V+  G+   + I 
Sbjct: 222 FSLFNEMRREGIDI-----VDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFIS 276

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
             L+DMYA+   ++ A  +F +M  K+V+SW+++I   A++G A EAL L+ EM++    
Sbjct: 277 NALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSR-- 334

Query: 286 LCPNSVTMVSVLQACAALAALEQGK-MIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
           + PN VT V +L AC+    + +G+ +         ++  L   + L+ + +R G L+  
Sbjct: 335 IKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEA 394

Query: 345 QCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFV---SVLG 399
           + + D +  K D  +W SL+S+   H      ++I   ++   + P  P +++   +V  
Sbjct: 395 ENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVL--DLKPEDPSTYILLSNVYA 452

Query: 400 ACSHAGLVEEGKMLFESM--RKE 420
                G V + + L  SM  RKE
Sbjct: 453 GAEMWGSVSKVRKLMSSMEVRKE 475



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           LQ CA   +      +H  I++ G D    + + L+ +Y +CG +     +FD M  RD 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKML 413
           VSW S+++++       + + +   M  H G+ P    F  ++ ACS  G +  GK +
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQV 127


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/531 (39%), Positives = 328/531 (61%), Gaps = 8/531 (1%)

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
           +  R VFD+   R    WN L        R +E L + R M     G   D FT + VL 
Sbjct: 121 ESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREM--WRDGFMPDTFTLSTVLP 178

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
             + + C  + +K G  +H   +++G++  V + ++LIDMYA    + Y+  VF   +  
Sbjct: 179 --IFAEC--ADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDC 234

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           + V W++M+A YA+NG   EAL +FR M+     + P  VT  S++ A   L+ L  GK 
Sbjct: 235 DAVLWNSMLAGYAQNGSVEEALGIFRRMLQAG--VRPVPVTFSSLIPAFGNLSLLRLGKQ 292

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +H Y++R   +  + + S+L+ MY +CG +++ + VF+ +   D+VSW ++I  Y +HG 
Sbjct: 293 LHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGP 352

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             +A  +F+ M    V P+ I+F++VL ACSHAGLV+ G   F SM  ++   PS+EH A
Sbjct: 353 TTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCA 412

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
            + D LGRA  L+EA   I +++I+P   VW +LL +CR+H N  LAE  +K++FELEP 
Sbjct: 413 ALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPK 472

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
           + G++V+L+++Y+A+  W+E  ++++ +  +G++K P  S IEVK K++ F++ D+ HP 
Sbjct: 473 SMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPW 532

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
           ++++   L   S +M  +GYVP  + VL D++ E+K  ++ GHSEKLA+ FG+I+T  G 
Sbjct: 533 YDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGT 592

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           TIR+ KNLR+C DCH  TKFISK   +EI+VRDVNRFH F++G CSCGD+W
Sbjct: 593 TIRVMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 159/323 (49%), Gaps = 11/323 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH +   NGFD D F+ + LI++Y++   +D +  VFD        +WN++       G 
Sbjct: 192 VHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGS 251

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            EE L ++RRM     G+R    T++ ++ A        SLL+ GK++HA ++R  +N  
Sbjct: 252 VEEALGIFRRM--LQAGVRPVPVTFSSLIPAF----GNLSLLRLGKQLHAYLIRARFNDN 305

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           + I ++LIDMY + G V  A  VF+ +   ++VSW+AMI  YA +G   EA  LF    M
Sbjct: 306 IFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFER--M 363

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           E  ++ PN +T ++VL AC+    ++ G K  +    + G    L   +AL     R G 
Sbjct: 364 ELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGD 423

Query: 341 LELGQCVFDHMDKRDVVS-WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           L+        M  +   S W++L+ +  VH     A ++ K+ I+     S  S V +  
Sbjct: 424 LDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKK-IFELEPKSMGSHVILSN 482

Query: 400 ACSHAGLVEEGKMLFESMRKEHM 422
             S +G   E   L +SMR + M
Sbjct: 483 MYSASGRWNEAAQLRKSMRIKGM 505



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 13/217 (5%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++    + G++ +AL +    L     P   T+  L+ +  + + L     +H++L  
Sbjct: 240 NSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIR 299

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
             F+ + F+ + LI++Y    +VD AR VF+  +   I  W A+     L G   E   L
Sbjct: 300 ARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVL 359

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG-KEIHASVLRHGYNGIVHIMTT 227
           + RM      ++ +  T+  VL AC  S  G  L+ +G K  ++   ++G+   +     
Sbjct: 360 FERME--LGNVKPNHITFLAVLTAC--SHAG--LVDNGWKYFNSMSNQYGFVPSLEHCAA 413

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMI-AC 262
           L D   R G +  A    S+M +K   S WS ++ AC
Sbjct: 414 LADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRAC 450


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/590 (37%), Positives = 347/590 (58%), Gaps = 15/590 (2%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDN-GFDQDPFLVTKLINVYSHFDSVDDARHV 137
           T   Y  LL +C    SL   + + S + +N     +P L++KLI ++S    +D AR +
Sbjct: 137 TPEAYTDLLHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKI 196

Query: 138 FDKTRRRTIY---VWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           FD     ++    VW A+    +  G   + L +Y  M    + I    F+ +  LKACV
Sbjct: 197 FDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDM--LCSFIEPGNFSISVALKACV 254

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
                   L+ G+ IHA +++        +   L+ +Y   G    A  VF  M+ +NVV
Sbjct: 255 ----DLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVV 310

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           +W+++I+  ++     E   LFR+M  E      +  T+ ++L AC+ +AAL  GK IH 
Sbjct: 311 TWNSLISVLSKKVRVHEMFNLFRKMQEEMIGF--SWATLTTILPACSRVAALLTGKEIHA 368

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            IL+      +P++++L+ MY +CG++E  + VFD M  +D+ SWN +++ Y ++G   +
Sbjct: 369 QILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEE 428

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
            I +F+ MI  GV+P  I+FV++L  CS  GL E G  LFE M+ E  + P++EHYAC+V
Sbjct: 429 VINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLV 488

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           D+LGRA K++EA K+IE +  +P   +WGSLL SCR+H NV + E A+K LF LEP N G
Sbjct: 489 DILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPG 548

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD--EFHPQF 552
           NYV+++++YA A MWD V +++ +++ RG++K  G S ++VK K+  FV+    EF    
Sbjct: 549 NYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNS- 607

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
           ++   +   L   +++ GY P T VVL+D+D E K   V GHSE+LA  + LI+T +G  
Sbjct: 608 DEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVP 667

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IRITKNLR+C DCHS+ K +S+   + I++RD  RFHHF +G+CSC DYW
Sbjct: 668 IRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 717



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 142/316 (44%), Gaps = 14/316 (4%)

Query: 61  KQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPF 116
           + G+ R AL    D+L     P   +  + L +C     L     +H+ +       D  
Sbjct: 220 RNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQV 279

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           +   L+ +Y      DDAR VFD    R +  WN+L   L+   R  E+  L+R+M    
Sbjct: 280 VYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEM 339

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
            G      T T +L AC       + L  GKEIHA +L+      V ++ +L+DMY + G
Sbjct: 340 IGF--SWATLTTILPAC----SRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCG 393

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            V Y+  VF  M  K++ SW+ M+ CYA NG   E + LF  MI     + P+ +T V++
Sbjct: 394 EVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMI--ESGVAPDGITFVAL 451

Query: 297 LQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           L  C+     E G  +         +   L   + LV +  R GK++    V + M  + 
Sbjct: 452 LSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKP 511

Query: 356 VVS-WNSLISSYGVHG 370
             S W SL++S  +HG
Sbjct: 512 SASIWGSLLNSCRLHG 527


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/594 (38%), Positives = 356/594 (59%), Gaps = 34/594 (5%)

Query: 72  LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS--HFD 129
           LS E N  Q  +  LL  C++   L     +H  +   G   D    +KL+   +  +  
Sbjct: 12  LSSESNAAQTLH--LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSG 66

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           S+  AR VFD+  R   ++WN + R  + +   EE L LY  M      +  + +T+ ++
Sbjct: 67  SLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHM--LYHSVPHNAYTFPFL 124

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           LKAC +     S L+  ++IHA +++ G+   ++   +L+++Y++ G +  A  +F Q+ 
Sbjct: 125 LKACSS----MSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVD 180

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            ++                  EAL LF  M  ++  +  ++V +VS LQACA L  L+QG
Sbjct: 181 QRDT-----------------EALNLFHRM--QTAGIKLDNVALVSTLQACADLGVLDQG 221

Query: 310 KMIHGYILRRGLDSILPVVS-ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           K IH YI +  ++ I P++   L+ MYA+CG LE    VF  M+++ V  W ++IS Y +
Sbjct: 222 KWIHAYIKKHEIE-IDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAI 280

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           HG G +A++ F +M   GV P+ ++F  +L ACSHAGLV E K+LFESM + H  +PS+E
Sbjct: 281 HGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIE 340

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
           HY CMVDLLGRA  L+EA ++IE++ ++P   +WG+LL +C IH N+EL ++  K L ++
Sbjct: 341 HYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQV 400

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
           +P + G Y+ LA ++AAA  W++  RV+R ++ +G+ K+PG S I V    + F++ DE 
Sbjct: 401 DPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDES 460

Query: 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
           HPQ +++  +L  +   ++E+GY P+   +L DL+ +EKE  +  HSEKLAV FGLI+T 
Sbjct: 461 HPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTK 520

Query: 609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            G TIRI KNLR+CEDCH+  K ISK   +EIL+RD  RFH F++G C+CGDYW
Sbjct: 521 PGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/647 (35%), Positives = 375/647 (57%), Gaps = 18/647 (2%)

Query: 25  LPPKPSSVCC---CVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEP----- 76
           L PKP  V      V++   T     SS      I+ L      R+A+++  I       
Sbjct: 53  LKPKPKKVEYRERKVAVLDDTQIRKTSSSGLCIQIEKLVLCNRYREAMELFEILELEHDG 112

Query: 77  -NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
            +    TY+ L+ +C    S+     V +++ ++GF+ D +++ +++ V+     + DAR
Sbjct: 113 FDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDAR 172

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            +FD+   + +  W  +      +G   E   L+  M       RS  FT        + 
Sbjct: 173 KLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFT------TMIR 226

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           +S G  L++ G++IH+  L+ G      +   LIDMY++ G +  A  VF QM  K  V 
Sbjct: 227 ASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVG 286

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+++IA YA +G + EAL  + EM      +  +  T+  V++ CA LA+LE  K  H  
Sbjct: 287 WNSIIASYALHGYSEEALSFYYEMRDSGAKI--DHFTISIVIRICARLASLEYAKQAHAA 344

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           ++RRG D+ +   +ALV  Y++ G++E    VF+ M +++V+SWN+LI+ YG HG G +A
Sbjct: 345 LVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEA 404

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           +++F++M+  G+ P+ ++F++VL ACS++GL E G  +F SM ++H ++P   HYACMV+
Sbjct: 405 VEMFEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVE 464

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495
           LLGR   L+EA ++I     +P   +W +LL +CR+H N+EL + A++ L+ +EP    N
Sbjct: 465 LLGREGLLDEAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCN 524

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           Y++L ++Y ++    E   V + L+ +GL+ +P  + IEVK++ Y+F+  D+ H Q +++
Sbjct: 525 YIVLLNLYNSSGKLKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEI 584

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
           +  + N+  E+   GYV + K +L D+D EE++RI+  HSEKLA+AFGLINT     ++I
Sbjct: 585 YEKVNNMMVEISRHGYVEENKALLPDVD-EEEQRILKYHSEKLAIAFGLINTPHWTPLQI 643

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           T+  R+C DCHS  KFI+    +EI+VRD +RFHHFR+G CSCGDYW
Sbjct: 644 TQGHRVCGDCHSAIKFIAMVTGREIVVRDASRFHHFRDGSCSCGDYW 690


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/574 (38%), Positives = 341/574 (59%), Gaps = 17/574 (2%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           TY  ++ +C   +     L VH+H+  +GF+ D ++V  LI++Y++   +  A+ +F   
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             R +  WNA+       G       ++ RM      +  D  ++  ++        G++
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM------VCRDVISWNTIIN-------GYA 108

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
           ++    E            +V    +++  + + G V  A  +FS+M  ++VVSW++M+A
Sbjct: 109 IVGKIDEAKRLFDEMPERNLVS-WNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLA 167

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
           CYA+ G   EAL LF +M   +  + P   T+VS+L ACA L AL++G  +H YI    +
Sbjct: 168 CYAQCGKPNEALALFDQM--RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRI 225

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           +    V +ALV MYA+CGK+ L   VF+ M+ +DV++WN++I+   +HG+  +A Q+FKE
Sbjct: 226 EVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKE 285

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M    V P+ I+FV++L ACSHAG+V+EG+ L + M   + I P VEHY C++DLL RA 
Sbjct: 286 MKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAG 345

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
            LEEA ++I  + +EP P   G+LLG CRIH N EL E   KRL  L+P ++G Y+LL++
Sbjct: 346 LLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSN 405

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YAAA  WD+ ++V+ L++  G+ KVPG S IE+K  ++ FV+ D  HP+  +++  L  
Sbjct: 406 IYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNE 465

Query: 562 LSAEMKEK-GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
           +   +K   GY   T  VL D++ E+KE  +  HSEKLA+A+GL++    E IRI KNLR
Sbjct: 466 IHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLR 525

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
           +C DCH  TK ISK   +EI+VRD NRFHHF +G
Sbjct: 526 VCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 559



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 167/416 (40%), Gaps = 65/416 (15%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++    + G   +AL +     ++   PT+ T   LL +C H  +L   L++H+++ D
Sbjct: 163 NSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIND 222

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           N  + +  + T L+++Y+    +  A  VF+    + +  WN +   + + G  +E  +L
Sbjct: 223 NRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQL 282

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           ++ M      +  +  T+  +L AC                HA ++  G          L
Sbjct: 283 FKEMK--EASVEPNDITFVAMLSACS---------------HAGMVDEG--------QKL 317

Query: 229 ID-MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           +D M + +G                V  +  +I   AR G+  EA+EL   M ME     
Sbjct: 318 LDCMSSSYGI------------EPKVEHYDCVIDLLARAGLLEEAMELIGTMPME----- 360

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA----LVTMYARCGKLEL 343
           PN   + ++L  C      E G+M+      + L ++ P  S     L  +YA   K + 
Sbjct: 361 PNPSALGALLGGCRIHGNFELGEMVG-----KRLINLQPCHSGRYILLSNIYAAAKKWDD 415

Query: 344 GQCVFDHMDKRDV--VSWNSLISSYG-VHGY-GGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            + V + M    +  V   S+I   G VH +  G         IY  ++       S +G
Sbjct: 416 ARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIG 475

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
             +  G V    +  E   KEH +    E  A    LL   +K  EA +I+++LR+
Sbjct: 476 YSADTGNV---LLDMEEEDKEHALAVHSEKLAIAYGLLHLDSK--EAIRIVKNLRV 526


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/625 (35%), Positives = 351/625 (56%), Gaps = 56/625 (8%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD------ 133
           +H    LL SC+   S SD   +H  L       D F+ ++L+ +      VDD      
Sbjct: 12  KHPKLALLQSCS---SFSDLKIIHGFLLRTHLISDVFVASRLLAL-----CVDDSTFNKP 63

Query: 134 ------ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
                 A  +F + +   ++V+N L R  +      +    Y +M    + I  D  T+ 
Sbjct: 64  TNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQM--LKSRIWPDNITFP 121

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
           +++KA     C       G++ H+ ++R G+   V++  +L+ MYA  G +  AG +F Q
Sbjct: 122 FLIKASSEMECVLV----GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQ 177

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREM---------------------------- 279
           M  ++VVSW++M+A Y + GM   A E+F EM                            
Sbjct: 178 MGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 237

Query: 280 -IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
             M+   +  N   MVSV+ +CA L ALE G+  + Y+++  +   L + +ALV M+ RC
Sbjct: 238 EFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRC 297

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G +E    VF+ + + D +SW+S+I    VHG+  KA+  F +MI  G  P  ++F +VL
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSH GLVE+G  ++E+M+K+H I P +EHY C+VD+LGRA KL EA   I  + ++P 
Sbjct: 358 SACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPN 417

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             + G+LLG+C+I+ N E+AER    L +++P ++G YVLL+++YA A  WD+++ ++ +
Sbjct: 418 APILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDM 477

Query: 519 LEARGLQKVPGRSRIEVKRKMYSF-VSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKV 577
           ++ + ++K PG S IE+  K+  F +  D+ HP+  ++      +  +++  GY   T  
Sbjct: 478 MKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGD 537

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
             +D+D EEKE  +  HSEKLA+A+G++ T  G TIRI KNLR+CEDCH+ TK IS+   
Sbjct: 538 AFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYG 597

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +E++VRD NRFHHFRNGVCSC DYW
Sbjct: 598 RELIVRDRNRFHHFRNGVCSCRDYW 622



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 123/296 (41%), Gaps = 40/296 (13%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH---------- 127
           P   T+  L+ + +    +      HS +   GF  D ++   L+++Y++          
Sbjct: 115 PDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRI 174

Query: 128 ---------------------FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
                                   V++AR +FD+   R ++ W+ +          E+ +
Sbjct: 175 FGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAI 234

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +L+  M   G            V+ + ++S      L+ G+  +  V++      + + T
Sbjct: 235 DLFEFMKREGV------VANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGT 288

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+DM+ R G +  A  VF  +   + +SWS++I   A +G A +A+  F +MI  S   
Sbjct: 289 ALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMI--SLGF 346

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKL 341
            P  VT  +VL AC+    +E+G  I+  + +  G++  L     +V M  R GKL
Sbjct: 347 IPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKL 402


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/577 (38%), Positives = 341/577 (59%), Gaps = 8/577 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L  C  + ++ +A   H          D  L   LIN YS    V+ AR VFD    R+
Sbjct: 69  ILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERS 128

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  WN +    T      E L+++  M   G   +   FT + VL AC A+         
Sbjct: 129 LVSWNTMIGLYTRNRMESEALDIFWEMRNEG--FKFSEFTISSVLSACGANCDALEC--- 183

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
            K++H   ++   +  +++ T L+D+YA+ G +  A  VF  M  K+ V+WS+M+A Y +
Sbjct: 184 -KKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQ 242

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           +    EAL L+R    +   L  N  T+ SV+ AC+ LAAL +GK +H  I + G  S +
Sbjct: 243 SKNYEEALLLYRRA--QRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNV 300

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V S+ V MYA+CG L     +F  + ++++  WN++IS +  H    + + +F++M   
Sbjct: 301 FVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQD 360

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ P+ ++F S+L  C H GLVEEG+  F+ MR  + + P+V HY+CMVD+LGRA  L E
Sbjct: 361 GMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSE 420

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A ++I+ +  EP   +WGSLL SCR+  N+ELAE A+K+LFELEP NAGN+VLL+++YAA
Sbjct: 421 AYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAA 480

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
              W+E+ + ++LL    ++KV G+S I++K K++ F   +  HP+  ++  +L NL  E
Sbjct: 481 NKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIE 540

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           +++ GY P  +  L+D++  +KE +++ HSEKLA+ FGL+   +G T+RI KNLR+C DC
Sbjct: 541 LRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRICVDC 600

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H F K  S    + I+VRD NRFHHF +G CSCG++W
Sbjct: 601 HEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 155/337 (45%), Gaps = 29/337 (8%)

Query: 37  SLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNP----TQHTYELLLLSCTH 92
           SL S  T   L +RN+ E            +ALD+     N     ++ T   +L +C  
Sbjct: 128 SLVSWNTMIGLYTRNRME-----------SEALDIFWEMRNEGFKFSEFTISSVLSACGA 176

Query: 93  HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
           +    +   +H        D + ++ T L+++Y+    ++DA  VF+  + ++   W+++
Sbjct: 177 NCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSM 236

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
                 +   EE L LYRR       +  ++FT + V+ AC       + L  GK++HA 
Sbjct: 237 VAGYVQSKNYEEALLLYRR--AQRMSLEQNQFTLSSVICAC----SNLAALIEGKQMHAV 290

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
           + + G+   V + ++ +DMYA+ G +  +  +FS++  KN+  W+ +I+ +A++    E 
Sbjct: 291 IRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEV 350

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---S 329
           + LF +  M+   + PN VT  S+L  C     +E+G+    + L R    + P V   S
Sbjct: 351 MILFEK--MQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRF--FKLMRTTYGLSPNVVHYS 406

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVS-WNSLISS 365
            +V +  R G L     +   +      S W SL++S
Sbjct: 407 CMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLAS 443



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 4/175 (2%)

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
           + +LQ CA   A+ + K  HG  +R  L   + + + L+  Y++CG +EL + VFD M +
Sbjct: 67  IEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLE 126

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC-SHAGLVEEGKM 412
           R +VSWN++I  Y  +    +A+ IF EM   G   S  +  SVL AC ++   +E  K+
Sbjct: 127 RSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKL 186

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
              SM+    +   V     ++DL  +   + +A ++ E ++ +     W S++ 
Sbjct: 187 HCLSMKTSLDLNLYVG--TALLDLYAKCGMINDAVQVFESMQ-DKSSVTWSSMVA 238


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 341/578 (58%), Gaps = 11/578 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LLLS     S+   L +H ++  +G    P +   LIN YS      D+R  F+ + +++
Sbjct: 21  LLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKS 80

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC-VASSCGFSLLK 204
              W+++             LE  R+M      +R D        K+C + S C      
Sbjct: 81  ATTWSSIISCFAQNELPWMSLEFLRKM--MAGSLRPDDHVLPSATKSCGILSRCDI---- 134

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
            GK +H   ++ GY+  V + ++L+DMYA+ G ++YA  +F +M ++NVV+WS M+  YA
Sbjct: 135 -GKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYA 193

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           + G   EAL LF+E + E  +L  N  +  +V+  CA    LE G+ I G  ++   DS 
Sbjct: 194 QMGENEEALWLFKEALFE--NLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSS 251

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
             V S+LV++Y++CG LE    VFD +  R++  WN+++ +   H +  K I++FK M  
Sbjct: 252 SFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKL 311

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            G+ P+ I+F++VL ACSHAGLV+EGK  F+ M KE  I P+ +HYA +VD+LGRA KLE
Sbjct: 312 SGMKPNFITFLNVLNACSHAGLVDEGKYYFDLM-KESRIEPTDKHYASLVDMLGRAGKLE 370

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
           EA +I+ ++ I+P   VWG+LL SC IH N ELA  A+ ++FEL P ++G ++ L++ YA
Sbjct: 371 EALEIVTNMPIDPTESVWGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYA 430

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
           A   +++  + ++LL  RG +K  G S +E + K+++F + +  H + ++++  L  L  
Sbjct: 431 ADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGE 490

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           EM++ GYV  T  VL ++D +EK + +  HSE+LA+AFGLI       IR+ KNLR+C D
Sbjct: 491 EMEKAGYVADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGD 550

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH+  KF+S    + I+VRD NRFH F +G CSC DYW
Sbjct: 551 CHNAIKFMSICTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 142/294 (48%), Gaps = 11/294 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  H       SC   +      +VH      G+D D F+ + L+++Y+    +  AR +
Sbjct: 114 PDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKM 173

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+   R +  W+ +       G  EE L L++        +  + ++++ V+  C  S 
Sbjct: 174 FDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKE--ALFENLAVNDYSFSTVISVCANS- 230

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
              +LL+ G++I    ++  ++    + ++L+ +Y++ G +  A  VF ++ ++N+  W+
Sbjct: 231 ---TLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWN 287

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AM+   A++    + +ELF+ M +    + PN +T ++VL AC+    +++GK     + 
Sbjct: 288 AMLKACAQHSHTQKVIELFKRMKLSG--MKPNFITFLNVLNACSHAGLVDEGKYYFDLMK 345

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHM--DKRDVVSWNSLISSYGVH 369
              ++      ++LV M  R GKLE    +  +M  D  + V W +L++S  +H
Sbjct: 346 ESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTESV-WGALLTSCTIH 398



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/233 (18%), Positives = 103/233 (44%), Gaps = 3/233 (1%)

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
           C N   +  +L + A   ++ +G  +HGYI++ GL  I  V + L+  Y++       + 
Sbjct: 12  CHNYNQICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRR 71

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
            F+   ++   +W+S+IS +  +     +++  ++M+   + P      S   +C     
Sbjct: 72  AFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSR 131

Query: 407 VEEGKMLF-ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
            + GK +   SM+  +     V   + +VD+  +  ++  A K+ +++ +       G +
Sbjct: 132 CDIGKSVHCLSMKTGY--DADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMM 189

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
            G  ++  N E      + LFE    N  ++  +  V A + + +  ++++ L
Sbjct: 190 YGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGL 242


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/593 (36%), Positives = 338/593 (56%), Gaps = 39/593 (6%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV------------ 148
            VH  +   GF    F  + L+++Y+    + DAR VFD+   + + +            
Sbjct: 166 QVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCK 225

Query: 149 -------------------WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
                              W  +   LT  G   E L+++RRM   G GI  D++T+  +
Sbjct: 226 MVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGI--DQYTFGSI 283

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
           L AC A     + L+ GK+IHA + R  Y   V + + L+DMY++   V  A  VF +M 
Sbjct: 284 LTACGA----LAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMM 339

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            KN++SW+AMI  Y +NG   EA+ +F E  M+   + P+  T+ SV+ +CA LA+LE+G
Sbjct: 340 WKNIISWTAMIVGYGQNGCGEEAVRVFSE--MQRDGIKPDDFTLGSVISSCANLASLEEG 397

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
              H   L  GL   + V +ALVT+Y +CG +E    +FD M   D VSW +L+  Y   
Sbjct: 398 AQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQF 457

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G   + I +F++M+  GV P  ++F+ VL ACS +GLV++G+  F SM+++H I P  +H
Sbjct: 458 GKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDH 517

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
           Y CM+DL  R+  L++A + I+ +   P    W +LL +CR+  ++E+ + A++ L +L+
Sbjct: 518 YTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLD 577

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFH 549
           P N  +YVLL  ++A+   W++V +++R +  R ++K PG S I+ K K++ F + D+ H
Sbjct: 578 PQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSH 637

Query: 550 PQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSK 609
           P    ++  L  L+++M E+GY P    VL+D+   EK  ++  HSEKLA+AFGLI    
Sbjct: 638 PFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIFVPP 697

Query: 610 GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              IRI KNLR+C DCH+ TKFISK   ++ILVRD  RFH F NG+CSCGD+W
Sbjct: 698 EMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 185/400 (46%), Gaps = 69/400 (17%)

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           +L+  L+  Y+    +  AR VFD    R +   N+L  AL  AG   ++  L+  +   
Sbjct: 47  YLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQR 106

Query: 176 GT-------------------------------GIRSDRFTYTYVLKACVASSCGFSLLK 204
                                            G+R  R T + V+   VAS+ G   L 
Sbjct: 107 DAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVM--VASALGDRAL- 163

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV---------- 254
            G+++H  +LR G+       + L+DMYA+ G +  A  VF +M  KNVV          
Sbjct: 164 -GRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLL 222

Query: 255 ---------------------SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
                                +W+ M+    +NG+  EAL++FR M  E   +  +  T 
Sbjct: 223 RCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGI--DQYTF 280

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
            S+L AC ALAALE+GK IH YI R   +  + V SALV MY++C  + L + VF  M  
Sbjct: 281 GSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMW 340

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           ++++SW ++I  YG +G G +A+++F EM   G+ P   +  SV+ +C++   +EEG   
Sbjct: 341 KNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQ- 399

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           F  +     +RP V     +V L G+   +E+A ++ +++
Sbjct: 400 FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEM 439



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 162/324 (50%), Gaps = 18/324 (5%)

Query: 55  LIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           ++  L + G   +ALDV     +      Q+T+  +L +C    +L +   +H+++T   
Sbjct: 248 MVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTC 307

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           ++ + F+ + L+++YS   SV  A  VF +   + I  W A+       G GEE + ++ 
Sbjct: 308 YEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFS 367

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M     GI+ D FT   V+ +C       + L+ G + H   L  G    V +   L+ 
Sbjct: 368 EMQ--RDGIKPDDFTLGSVISSCA----NLASLEEGAQFHCLALVSGLRPYVTVSNALVT 421

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           +Y + G +  A  +F +M+  + VSW+A++  YA+ G A E ++LF +M+  S  + P+ 
Sbjct: 422 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKML--SKGVKPDG 479

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV---VSALVTMYARCGKLELGQCV 347
           VT + VL AC+    +++G+  + + +++  D I+P+    + ++ +Y+R G L+  +  
Sbjct: 480 VTFIGVLSACSRSGLVDKGRS-YFHSMQQDHD-IVPLDDHYTCMIDLYSRSGWLKQAEEF 537

Query: 348 FDHMDK-RDVVSWNSLISSYGVHG 370
              M +  D   W +L+S+  + G
Sbjct: 538 IKQMPRCPDAFGWATLLSACRLRG 561



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 143/347 (41%), Gaps = 68/347 (19%)

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
           TY+L   + +     LL H + +  ++   G N +     +L+   AR G V     +F+
Sbjct: 46  TYLLNTLLTAYASSGLLPHARRVFDAM--PGRNLVTG--NSLLSALARAGLVRDMERLFT 101

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
            +  ++ VS++A++A ++R G    A   +  ++ +   + P+ +TM  V+   +AL   
Sbjct: 102 SLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDR 161

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM--------------- 351
             G+ +H  ILR G  +     S LV MYA+ G +   + VFD M               
Sbjct: 162 ALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGL 221

Query: 352 ----------------DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
                           ++RD ++W ++++    +G   +A+ +F+ M   GV     +F 
Sbjct: 222 LRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFG 281

Query: 396 SVLGACSHAGLVEEGKMLFESMRK------------------------------EHMIRP 425
           S+L AC     +EEGK +   + +                                M+  
Sbjct: 282 SILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWK 341

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLR---IEPGPKVWGSLLGSC 469
           ++  +  M+   G+    EEA ++  +++   I+P     GS++ SC
Sbjct: 342 NIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSC 388


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/581 (39%), Positives = 351/581 (60%), Gaps = 12/581 (2%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           YE ++ +  H   L  A   H+HL   G  +   L+TKL+ +     S+   R +F    
Sbjct: 13  YEAVVSAGPHLRRLQQA---HAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVS 69

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
               +++N+L +A +  G   + +  YRRM    + I    +T+T V+KAC       SL
Sbjct: 70  DPDSFLFNSLIKASSNFGFSLDAVFFYRRM--LHSRIVPSTYTFTSVIKACA----DLSL 123

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L+ G  +H+ V   GY     +   L+  YA+      A  VF +M  +++++W++MI+ 
Sbjct: 124 LRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISG 183

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y +NG+A EA+E+F +M     +  P+S T VSVL AC+ L +L+ G  +H  I+  G+ 
Sbjct: 184 YEQNGLASEAVEVFNKMRESGGE--PDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIR 241

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             + + ++LV M++RCG +   + VFD M++ +VVSW ++IS YG+HGYG +A+++F  M
Sbjct: 242 MNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRM 301

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              GV P+ +++V+VL AC+HAGL+ EG+++F SM++E+ + P VEH+ CMVD+ GR   
Sbjct: 302 KACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGL 361

Query: 443 LEEAAKIIEDLRIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
           L EA + +  L  E   P VW ++LG+C++H N +L    ++ L   EP N G+YVLL++
Sbjct: 362 LNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSN 421

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YA A   D V+ V+ ++  RGL+K  G S I+V+ + Y F   D+ HP+  +++  L  
Sbjct: 422 MYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDE 481

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           L    K+ GY P  +  +++L+ EE+E  +  HSEKLAVAFGL+ T  G T+RI KNLR+
Sbjct: 482 LMWRCKDAGYAPAPESAMHELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRI 541

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CEDCHS  KFIS   N+EI+VRD  RFHHFR G CSC DYW
Sbjct: 542 CEDCHSAIKFISVVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 152/311 (48%), Gaps = 15/311 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P+ +T+  ++ +C   + L     VHSH+  +G+  + F+   L+  Y+   +   AR V
Sbjct: 106 PSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKV 165

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+  +R+I  WN++       G   E +E++ +M  +G     D  T+  VL AC    
Sbjct: 166 FDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGG--EPDSATFVSVLSACSQ-- 221

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  G  +H  ++  G    V + T+L++M++R G V  A  VF  M   NVVSW+
Sbjct: 222 --LGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWT 279

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI+ Y  +G   EA+E+F    M++  + PN VT V+VL ACA    + +G+++   + 
Sbjct: 280 AMISGYGMHGYGVEAMEVFHR--MKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMK 337

Query: 318 RRGLDSILPVVS---ALVTMYARCGKLELGQCVFDHMDKRDVVS--WNSLISSYGVHGYG 372
           +     ++P V     +V M+ R G L         +   ++V   W +++ +  +H   
Sbjct: 338 QE--YGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNF 395

Query: 373 GKAIQIFKEMI 383
              +++ + +I
Sbjct: 396 DLGVEVAENLI 406



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 18/220 (8%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G   +A++V +        P   T+  +L +C+   SL     +H  +  
Sbjct: 178 NSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVG 237

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   +  L T L+N++S    V  AR VFD      +  W A+     + G G E +E+
Sbjct: 238 TGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEV 297

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN---GIVHIM 225
           + RM     G+  +R TY  VL AC  +     L+  G+ + AS ++  Y    G+ H  
Sbjct: 298 FHRMK--ACGVVPNRVTYVAVLSACAHA----GLINEGRLVFAS-MKQEYGVVPGVEH-H 349

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVS--WSAMI-AC 262
             ++DM+ R G +  A      ++ + +V   W+AM+ AC
Sbjct: 350 VCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGAC 389


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/590 (37%), Positives = 348/590 (58%), Gaps = 15/590 (2%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P+  T+  +L +    +  +    +H+     GF +D  +  ++++ YS  D V + R 
Sbjct: 247 QPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRM 306

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FD+        +N +  + + A + E  L  +R M   G     DR  + +     +A+
Sbjct: 307 LFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGF----DRRNFPFATMLSIAA 362

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY--AGFVFSQMAVKNVV 254
           +   S L+ G+++H   L    + I+H+  +L+DMYA+  C M+  A  +F  +  +  V
Sbjct: 363 N--LSSLQMGRQLHCQALLATADSILHVGNSLVDMYAK--CEMFEEAELIFKSLPQRTTV 418

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           SW+A+I+ Y + G+    L+LF +M     +L  +  T  +VL+A A+ A+L  GK +H 
Sbjct: 419 SWTALISGYVQKGLHGAGLKLFTKM--RGSNLRADQSTFATVLKASASFASLLLGKQLHA 476

Query: 315 YILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
           +I+R G L+++    S LV MYA+CG ++    VF+ M  R+ VSWN+LIS++  +G G 
Sbjct: 477 FIIRSGNLENVFSG-SGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGE 535

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
            AI  F +MI  G+ P  +S + VL ACSH G VE+G   F++M   + I P  +HYACM
Sbjct: 536 AAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACM 595

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP-TN 492
           +DLLGR  +  EA K+++++  EP   +W S+L +CRIH N  LAERA+++LF +E   +
Sbjct: 596 LDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRD 655

Query: 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQF 552
           A  YV ++++YAAA  W++V+ VK+ +  RG++KVP  S +EV  K++ F S D+ HP  
Sbjct: 656 AAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNG 715

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
           +++   +  L+AE++ +GY P T  V+ D+D + K   +  HSE+LAVAF LI+T +G  
Sbjct: 716 DEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCP 775

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I + KNLR C DCH+  K ISK   +EI VRD +RFHHF  GVCSCGDYW
Sbjct: 776 IVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 193/417 (46%), Gaps = 14/417 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTK--LINVYSHFDSVDDAR 135
           P   T+  LL  C      +    VH+     GFD +PFL     L+  Y     +D A 
Sbjct: 145 PDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLAC 204

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            +F++   +    +N L       G   E + L+ +M  +G   +   FT++ VLKA V 
Sbjct: 205 VLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGH--QPSDFTFSGVLKAVV- 261

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
              G      G+++HA  +  G++    +   ++D Y++   V+    +F +M   + VS
Sbjct: 262 ---GLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVS 318

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           ++ +I+ Y++      +L  FREM     D    +    ++L   A L++L+ G+ +H  
Sbjct: 319 YNVVISSYSQADQYEASLHFFREMQCMGFD--RRNFPFATMLSIAANLSSLQMGRQLHCQ 376

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
            L    DSIL V ++LV MYA+C   E  + +F  + +R  VSW +LIS Y   G  G  
Sbjct: 377 ALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAG 436

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           +++F +M    +     +F +VL A +    +  GK L   + +   +  +V   + +VD
Sbjct: 437 LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLE-NVFSGSGLVD 495

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE--LEP 490
           +  +   +++A ++ E++  +     W +L+ +   + + E A  A  ++ E  L+P
Sbjct: 496 MYAKCGSIKDAVQVFEEMP-DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQP 551



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 144/326 (44%), Gaps = 11/326 (3%)

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           V  AR +FD    RT+  W  L          +E  +L+R+M  + +    D  T+T +L
Sbjct: 95  VSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLL 154

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGY--NGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
             C  +    ++     ++HA  ++ G+  N  + +   L+  Y     +  A  +F ++
Sbjct: 155 PGCNDAVPQNAV----GQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEI 210

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             K+ V+++ +I  Y ++G+  E++ LF +M    H   P+  T   VL+A   L     
Sbjct: 211 PEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQ--PSDFTFSGVLKAVVGLHDFAL 268

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           G+ +H   +  G      V + ++  Y++  ++   + +FD M + D VS+N +ISSY  
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
                 ++  F+EM   G       F ++L   ++   ++ G+ L    +       S+ 
Sbjct: 329 ADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL--HCQALLATADSIL 386

Query: 429 HYA-CMVDLLGRANKLEEAAKIIEDL 453
           H    +VD+  +    EEA  I + L
Sbjct: 387 HVGNSLVDMYAKCEMFEEAELIFKSL 412



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 9/205 (4%)

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMT----TLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
           LL+ G+    S  R  Y+ + H  T    T+I  + + G V  A  +F  M  + VV+W+
Sbjct: 58  LLRRGQ---VSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWT 114

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            ++  YARN    EA +LFR+M   S    P+ VT  ++L  C           +H + +
Sbjct: 115 ILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAV 174

Query: 318 RRGLDS--ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           + G D+   L V + L+  Y    +L+L   +F+ + ++D V++N+LI+ Y   G   ++
Sbjct: 175 KLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTES 234

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGA 400
           I +F +M   G  PS  +F  VL A
Sbjct: 235 IHLFLKMRQSGHQPSDFTFSGVLKA 259


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 248/716 (34%), Positives = 371/716 (51%), Gaps = 113/716 (15%)

Query: 52  KNELIQSLCKQGNLRQALDVLSIEPNPTQHT--YELLLLSCTHHNSLSDALNVHSHLTDN 109
           +  ++   C  G++  A  V    P   + T  Y  ++   +H+N    A+N+   +   
Sbjct: 83  RTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHE 142

Query: 110 GFDQDPF------------------------------------LVTKLINVYSHFDS--- 130
           GF  D F                                    +   L++VYS   S   
Sbjct: 143 GFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPS 202

Query: 131 -VDDARHVFDK---------TRRRTIYV-----------------------WNALFRALT 157
            +  AR VFD          T   T YV                       +NA+     
Sbjct: 203 LLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYV 262

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-- 215
             G  +E LE+ RRM    +GI  D FTY  V++AC  +     LL+ GK++HA VLR  
Sbjct: 263 NCGLYQEALEMVRRM--VSSGIELDEFTYPSVIRACANAR----LLQLGKQVHAYVLRRE 316

Query: 216 ----HGYNGIVHIM------------------------TTLIDMYARFGCVMYAGFVFSQ 247
               H  N +V +                           L+  Y   G +  A  +F +
Sbjct: 317 DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKE 376

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M  KN++SW  MI+  A NG   E L+LF  M  E  + C  + +    +++CA L A  
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFS--GAIKSCAVLGAYC 434

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+  H  +++ G DS L   +AL+TMYA+CG +E  Q VF  M   D VSWN+LI++ G
Sbjct: 435 NGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALG 494

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
            HG+G +A+ +++EM+  G+ P  I+F++VL ACSHAGLV++G+  F SM   + I P  
Sbjct: 495 QHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGA 554

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           +HYA ++DLL R+ K  EA  IIE L  +P  ++W +LL  CR+H N+EL   A+ +LF 
Sbjct: 555 DHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFG 614

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           L P + G Y+LL+++YAA   W+EV RV++L+  RG++K    S IE++ ++++F+  D 
Sbjct: 615 LIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDT 674

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE-EKERIVLGHSEKLAVAFGLIN 606
            HP+ E ++  L +L  EM+  GYVP T  VL+D++++  KE ++  HSEK+AVAFGL+ 
Sbjct: 675 SHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMK 734

Query: 607 TSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              G TIRI KNLR C DCH+F +F+SK   ++I++RD  RFHHFRNG CSCG++W
Sbjct: 735 LPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 181/427 (42%), Gaps = 96/427 (22%)

Query: 74  IEPNP-------TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS 126
           ++PNP        ++   L L       SL  A  VH ++   GF     ++ +LI+VY 
Sbjct: 1   MQPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYC 60

Query: 127 HFDSVDDARHVFDKTRR---------------------------------RTIYVWNALF 153
               +D AR +FD+                                    R   ++NA+ 
Sbjct: 61  KSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMI 120

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL----KHGKEI 209
              +    G   + L+ +M   G   + D FTY  VL        G +L+    K   + 
Sbjct: 121 TGFSHNNDGYSAINLFCKMKHEG--FKPDDFTYASVL-------AGLALVVDDEKQCVQF 171

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGC----VMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           HA+ L+ G   +  +   L+ +Y+R       +  A  VF  +  K+  SW+ M+  Y +
Sbjct: 172 HAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVK 231

Query: 266 NG------------------MAF--------------EALELFREMIMESHDLCPNSVTM 293
           NG                  +A+              EALE+ R M+    +L  +  T 
Sbjct: 232 NGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIEL--DEFTY 289

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
            SV++ACA    L+ GK +H Y+LRR  D      ++LVT+Y +CGK    + +F+ M  
Sbjct: 290 PSVIRACANARLLQLGKQVHAYVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPA 348

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +D+VSWN+L+S Y   G+ G+A  IFKEM    +    +S++ ++   +  G  EEG  L
Sbjct: 349 KDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI----LSWMIMISGLAENGFGEEGLKL 404

Query: 414 FESMRKE 420
           F  M++E
Sbjct: 405 FSCMKRE 411


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/585 (35%), Positives = 332/585 (56%), Gaps = 8/585 (1%)

Query: 78   PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
            P Q+TY  +L +C     L     +HS +    F  + ++ + LI++Y+    +D A  +
Sbjct: 471  PNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDI 530

Query: 138  FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
              +   + +  W  +    T     ++ L  +R+M     GIRSD    T  + AC    
Sbjct: 531  LIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM--LDRGIRSDEVGLTNAVSACA--- 585

Query: 198  CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
             G   LK G++IHA     G++  +     L+ +Y++ G +  A   F Q    + ++W+
Sbjct: 586  -GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWN 644

Query: 258  AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            A+++ + ++G   EAL +F  M  E  D   N+ T  S ++A +  A ++QGK +H  I 
Sbjct: 645  ALVSGFQQSGNNEEALRVFARMNREGID--SNNFTFGSAVKAASETANMKQGKQVHAVIT 702

Query: 318  RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
            + G DS   V +A+++MYA+CG +   +  F  +  ++ VSWN++I++Y  HG+G +A+ 
Sbjct: 703  KTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALD 762

Query: 378  IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
             F +MI+  V P+ ++ V VL ACSH GLV++G   FESM  E+ + P  EHY C+VD+L
Sbjct: 763  SFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDML 822

Query: 438  GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
             RA  L  A   I ++ IEP   VW +LL +C +H N+E+ E A+  L ELEP ++  YV
Sbjct: 823  TRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYV 882

Query: 498  LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
            LL+++YA    WD     ++ ++ +G++K PG+S IEVK  ++SF   D+ HP  +++H 
Sbjct: 883  LLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHE 942

Query: 558  LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
               +L+    E GYV     +L +L  E+K+  +  HSEKLA++FGL++      I + K
Sbjct: 943  YFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMK 1002

Query: 618  NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            NLR+C DCH + KF+SK +N+EI+VRD  RFHHF  G CSC DYW
Sbjct: 1003 NLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 220/462 (47%), Gaps = 42/462 (9%)

Query: 78  PTQHTYELLLLSCTHHN-SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           P   T + LL  C   N SL +   +HS +   GFD +  L  KL++ Y     +D A  
Sbjct: 65  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALK 124

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD+   RTI+ WN + + L       +V  L+ RM      +  +  T++ VL+AC   
Sbjct: 125 VFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRM--VNENVTPNEGTFSGVLEACRGG 182

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           S  F +++   +IHA ++  G      +   LID+Y+R G V  A  VF  + +K+  SW
Sbjct: 183 SVAFDVVE---QIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSW 239

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
            AMI+  ++N    EA+ LF +M +    + P      SVL AC  + +LE G+ +HG +
Sbjct: 240 VAMISGLSKNECEVEAIRLFCDMYVLG--IMPTPYAFSSVLSACKKIESLEIGEQLHGLV 297

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           L+ G  S   V +ALV++Y   G L   + +F +M +RD V++N+LI+     GYG KA+
Sbjct: 298 LKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAM 357

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML--------FESMRK--------- 419
           ++FK M   G+ P   +  S++ ACS  G +  G+ L        F S  K         
Sbjct: 358 ELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLY 417

Query: 420 ----------EHMIRPSVEH---YACMVDLLGRANKLEEAAKIIEDLRIE---PGPKVWG 463
                      + +   VE+   +  M+   G  + L  + +I   ++IE   P    + 
Sbjct: 418 AKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYP 477

Query: 464 SLLGSCRIHCNVELAERASKRLFELE-PTNAGNYVLLADVYA 504
           S+L +C    ++EL E+   ++ +     NA    +L D+YA
Sbjct: 478 SILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYA 519



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 121/462 (26%), Positives = 216/462 (46%), Gaps = 18/462 (3%)

Query: 47  LSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           +S  +KNE     C+   +R   D+  +   PT + +  +L +C    SL     +H  +
Sbjct: 243 ISGLSKNE-----CEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLV 297

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
              GF  D ++   L+++Y H  S+  A H+F    +R    +N L   L+  G GE+ +
Sbjct: 298 LKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAM 357

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++RM   G  +  D  T   ++ AC +    FS    G+++HA   + G+     I  
Sbjct: 358 ELFKRMQLDG--LEPDSNTLASLVVACSSDGTLFS----GQQLHAYTTKLGFASNDKIEG 411

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+++YA+   +  A   F +  V+NVV W+ M+  Y        +  +FR+M +E  ++
Sbjct: 412 ALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIE--EI 469

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            PN  T  S+L+ C  L  LE G+ IH  I++        V S L+ MYA+ GKL+    
Sbjct: 470 VPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWD 529

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +      +DVVSW ++I+ Y  + +  KA+  F++M+  G+    +   + + AC+    
Sbjct: 530 ILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQA 589

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV-WGSL 465
           ++EG+ +  +          +     +V L  +   +EEA    E  + E G  + W +L
Sbjct: 590 LKEGQQI-HAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFE--QTEAGDNIAWNAL 646

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507
           +   +   N E A R   R+   E  ++ N+   + V AA++
Sbjct: 647 VSGFQQSGNNEEALRVFARM-NREGIDSNNFTFGSAVKAASE 687


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/618 (36%), Positives = 355/618 (57%), Gaps = 43/618 (6%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L +C    + S    VH +   +G  +D F+   ++++Y+    +++A  VF++ + + 
Sbjct: 237 VLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKD 296

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK- 204
           +  WNA+    +  GR ++ L L+ ++      I  +  T++ V+        GF  L  
Sbjct: 297 VVSWNAMVTGYSQIGRFDDALGLFEKIREEK--IELNVVTWSAVIAGYAQRGLGFEALDV 354

Query: 205 ------------------------------HGKEIHASVLRHGYN-------GIVHIMTT 227
                                         HGKE H   ++   N         + ++  
Sbjct: 355 FRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINA 414

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKN--VVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           LIDMY++      A  +F  +  K+  VV+W+ +I   A++G A EALELF +M+   + 
Sbjct: 415 LIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNF 474

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS-ILPVVSALVTMYARCGKLELG 344
           + PN+ T+   L ACA L AL  G+ IH Y+LR   +S +L V + L+ MY++ G ++  
Sbjct: 475 VMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAA 534

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           + VFD+M +R+ VSW SL++ YG+HG G +A+QIF EM   G+ P  ++FV VL ACSH+
Sbjct: 535 RVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHS 594

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+V++G   F  M K+  + P  EHYACMVDLL RA +L+EA ++I  + ++P P VW +
Sbjct: 595 GMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVA 654

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +CR++ NVEL E A+ +L ELE  N G+Y LL+++YA A  W +V R++ L++  G+
Sbjct: 655 LLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGI 714

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +K PG S ++ ++   +F + D  HP  +Q++ LL +L   +K  GYVP  +  L+D+D 
Sbjct: 715 KKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDD 774

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           EEK  ++  HSEKLA+A+G++ T+ G  IRITKNLR C DCHS   +IS     EI+VRD
Sbjct: 775 EEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRD 834

Query: 645 VNRFHHFRNGVCSCGDYW 662
            +RFHHF+NG CSC  YW
Sbjct: 835 SSRFHHFKNGSCSCRGYW 852



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 179/357 (50%), Gaps = 50/357 (14%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK--TRRRTIYVWNAL 152
           SL+ A  +H  L   G   DP   T +I++Y  F+S   A  V  +      T++ WN L
Sbjct: 41  SLASAELIHQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQL 97

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
            R     G  E+VL+LYRRM   G   R D +T+ +VLKAC          + G  +HA 
Sbjct: 98  IRRSVHLGFLEDVLQLYRRMQRLGW--RPDHYTFPFVLKACGE----IPSFRCGASVHAV 151

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM---AVKNVVSWSAMIACYARNGMA 269
           V   G+   V +   L+ MY R G    A  VF +M    V ++VSW++++A Y + G +
Sbjct: 152 VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDS 211

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
             A+++F  M  E   + P++V++V+VL ACA++ A  +GK +HGY LR GL   + V +
Sbjct: 212 IRAMKMFERMT-EDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN 270

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL--------------------------- 362
           A+V MYA+CG +E    VF+ M  +DVVSWN++                           
Sbjct: 271 AVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIEL 330

Query: 363 --------ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
                   I+ Y   G G +A+ +F++M   G  P+ ++ VS+L  C+ AG +  GK
Sbjct: 331 NVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGK 387



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 133/499 (26%), Positives = 232/499 (46%), Gaps = 64/499 (12%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDA 99
           P+S +    N+LI+     G L   L +      +   P  +T+  +L +C    S    
Sbjct: 86  PSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCG 145

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI---YVWNALFRAL 156
            +VH+ +  +GF+ + F+   L+++Y    + ++AR VFD+ R R +     WN++  A 
Sbjct: 146 ASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAY 205

Query: 157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
              G     ++++ RM     GIR D  +   VL AC AS   +S    GK++H   LR 
Sbjct: 206 MQGGDSIRAMKMFERMT-EDLGIRPDAVSLVNVLPAC-ASVGAWS---RGKQVHGYALRS 260

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK------------------------- 251
           G    V +   ++DMYA+ G +  A  VF +M VK                         
Sbjct: 261 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 320

Query: 252 ----------NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
                     NVV+WSA+IA YA+ G+ FEAL++FR+M +   +  PN VT+VS+L  CA
Sbjct: 321 EKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSE--PNVVTLVSLLSGCA 378

Query: 302 ALAALEQGKMIHGYILRR--GLDSILP-----VVSALVTMYARCGKLELGQCVFDHMDKR 354
               L  GK  H + ++    LD   P     V++AL+ MY++C   +  + +FD +  +
Sbjct: 379 LAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPK 438

Query: 355 D--VVSWNSLISSYGVHGYGGKAIQIFKEMIY--HGVSPSPISFVSVLGACSHAGLVEEG 410
           D  VV+W  LI     HG   +A+++F +M+   + V P+  +    L AC+  G +  G
Sbjct: 439 DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 498

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           + +   + +       +    C++D+  ++  ++ A  + +++    G   W SL+    
Sbjct: 499 RQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVS-WTSLMTGYG 557

Query: 471 IHCNVELAERASKRLFELE 489
           +H      E A +  +E++
Sbjct: 558 MHGR---GEEALQIFYEMQ 573



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 121/306 (39%), Gaps = 51/306 (16%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQALDVLS--IEPN----PTQHTYELLLLSCTHHNSLS 97
           P   S      LI    + G   +AL++ S  ++P+    P   T    L++C    +L 
Sbjct: 437 PKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALR 496

Query: 98  DALNVHSHLTDNGFDQDPFLVTK-LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL 156
               +H+++  N F+     V   LI++YS    VD AR VFD   +R    W +L    
Sbjct: 497 FGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGY 556

Query: 157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
            + GRGEE L+++  M     G+  D  T+  VL AC                H+ ++  
Sbjct: 557 GMHGRGEEALQIFYEMQ--KVGLVPDGVTFVVVLYACS---------------HSGMVDQ 599

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
           G N           M   FG             V     ++ M+   +R G   EA+EL 
Sbjct: 600 GIN-------YFNGMNKDFG------------VVPGAEHYACMVDLLSRAGRLDEAMELI 640

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI--LRRGLDSILPVVSALVTM 334
           R M M+     P     V++L AC   A +E G+     +  L  G D    ++S +   
Sbjct: 641 RGMPMK-----PTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYA- 694

Query: 335 YARCGK 340
            ARC K
Sbjct: 695 NARCWK 700


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/649 (36%), Positives = 355/649 (54%), Gaps = 70/649 (10%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P+Q T   +L S      L     VHS +   G   +  +   L+N+Y+       A+ V
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVV 203

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM---------------NGTGTGIRS- 181
           FD+   + I  WNA+       G+ +  +  + +M               N  G  +R+ 
Sbjct: 204 FDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRAL 263

Query: 182 --------------DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
                         DRFT   VL AC         L  G++IH+ ++  G++    ++  
Sbjct: 264 DMFSKMLRDSMLSPDRFTLASVLSAC----ANLEKLCIGEQIHSHIVTTGFDISGIVLNA 319

Query: 228 LIDMYARFGCVMYA---------------GF------------------VFSQMAVKNVV 254
           LI MY+R G V  A               GF                  +F  +  ++VV
Sbjct: 320 LISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVV 379

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           +W+AMI  Y ++G+  EA+ LFR M+ E     PNS T+ ++L   ++LA+L  GK IHG
Sbjct: 380 AWTAMIVGYEQHGLYGEAINLFRSMVGEEQR--PNSYTLAAMLSVASSLASLGHGKQIHG 437

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGG 373
             ++ G    + V +AL+TMYA+ G +      FD +  +RD VSW S+I +   HG+  
Sbjct: 438 SAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAE 497

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A+++F+ M+  G+ P  I++V V  AC+HAGLV +G+  F+ M+    I P++ HYACM
Sbjct: 498 EALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACM 557

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDL GRA  L+EA + IE + IEP    WGSLL +CR++ N++L + A++RL  LEP N+
Sbjct: 558 VDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENS 617

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           G Y  LA++Y+A   W+E  ++++ ++   ++K  G S IEVK K+++F   D  HPQ  
Sbjct: 618 GAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKN 677

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           +++  +  +  E+K+ GYVP T  VL+DL+ E KE+I+  HSEKLA+AFGLI+T    T+
Sbjct: 678 EIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTL 737

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           RI KNLR+C DCH+  KFISK   +EI+VRD  RFHHF++G CSC DYW
Sbjct: 738 RIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 208/487 (42%), Gaps = 99/487 (20%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR 144
           LL  S    N    A  VH  +  +G     +L+  L+NVYS       AR +FD+   R
Sbjct: 19  LLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLR 78

Query: 145 TIYVWNALFRALTLAGRGEEVLELYRRMNGTGT--------------------------- 177
           T + WN +  A    G  +   E + R+    +                           
Sbjct: 79  TAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMM 138

Query: 178 --GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
             GI   +FT T VL +  A+ C    L+ GK++H+ +++ G  G V +  +L++MYA+ 
Sbjct: 139 REGIEPSQFTLTNVLASVAATRC----LETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC 194

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIAC-------------------------------YA 264
           G  M A  VF +M VK++ SW+AMIA                                Y 
Sbjct: 195 GDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYN 254

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           + G    AL++F +M+ +S  L P+  T+ SVL ACA L  L  G+ IH +I+  G D  
Sbjct: 255 QRGYDLRALDMFSKMLRDSM-LSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDIS 313

Query: 325 LPVVSALVTMYARCGKLE----------------------------LG-----QCVFDHM 351
             V++AL++MY+RCG +E                            LG     + +FD +
Sbjct: 314 GIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSL 373

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             RDVV+W ++I  Y  HG  G+AI +F+ M+     P+  +  ++L   S    +  GK
Sbjct: 374 KDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGK 433

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
            +  S  K   I  SV     ++ +  +A  +  A++  + +R E     W S++ +   
Sbjct: 434 QIHGSAVKSGEIY-SVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQ 492

Query: 472 HCNVELA 478
           H + E A
Sbjct: 493 HGHAEEA 499



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 165/360 (45%), Gaps = 53/360 (14%)

Query: 53  NELIQSLCKQGNLRQALDVLS-----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N +I    ++G   +ALD+ S        +P + T   +L +C +   L     +HSH+ 
Sbjct: 247 NSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIV 306

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDAR-------------------------------- 135
             GFD    ++  LI++YS    V+ AR                                
Sbjct: 307 TTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEA 366

Query: 136 -HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
            ++FD  + R +  W A+       G   E + L+R M G       ++   +Y L A +
Sbjct: 367 KNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVG------EEQRPNSYTLAAML 420

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNV 253
           + +   + L HGK+IH S ++ G    V +   LI MYA+ G +  A   F  +   ++ 
Sbjct: 421 SVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDT 480

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW++MI   A++G A EALELF  M+ME   L P+ +T V V  AC     + QG+   
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEG--LRPDHITYVGVFSACTHAGLVNQGRQY- 537

Query: 314 GYILRRGLDSILPVVS---ALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
            + + + +D I+P +S    +V ++ R G L+  Q   + M  + DVV+W SL+S+  V+
Sbjct: 538 -FDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVY 596



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 146/393 (37%), Gaps = 67/393 (17%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E  P  +T   +L   +   SL     +H     +G      +   LI +Y+   S+  A
Sbjct: 408 EQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSA 467

Query: 135 RHVFDKTR-RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
              FD  R  R    W ++  AL   G  EE LEL+  M     G+R D  TY  V  AC
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETM--LMEGLRPDHITYVGVFSAC 525

Query: 194 VASSCGFSLLKHGKEIHASVLRHG--YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
                           HA ++  G  Y  ++  +  +I   + + C              
Sbjct: 526 T---------------HAGLVNQGRQYFDMMKDVDKIIPTLSHYAC-------------- 556

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
                  M+  + R G+  EA E   +M +E     P+ VT  S+L AC     ++ GK+
Sbjct: 557 -------MVDLFGRAGLLQEAQEFIEKMPIE-----PDVVTWGSLLSACRVYKNIDLGKV 604

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM-----DKRDVVSWNSLISSY 366
               +L    ++     SAL  +Y+ CGK E    +   M      K    SW  +   +
Sbjct: 605 AAERLLLLEPENS-GAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEV--KH 661

Query: 367 GVHGYGGK-AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR---KEHM 422
            VH +G +  I   K  IY       I+   +       G V +   +   +    KE +
Sbjct: 662 KVHAFGVEDGIHPQKNEIY-------ITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQI 714

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
           +R   E  A    L+   +K     +I+++LR+
Sbjct: 715 LRHHSEKLAIAFGLISTPDK--TTLRIMKNLRV 745


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/613 (37%), Positives = 352/613 (57%), Gaps = 29/613 (4%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           +++   + G++ +A  +    P+    ++ ++L        + DA      L D   ++D
Sbjct: 123 MVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDA----RKLFDMMPEKD 178

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
              VT +I  Y     +D+AR +FD+  +R +  W A+       G+ +   +L+  M  
Sbjct: 179 VVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMP- 237

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI----VHIMTTLID 230
                  +  ++T +L     S         G+   AS L   ++ +    V +   +I 
Sbjct: 238 -----ERNEVSWTAMLLGYTHS---------GRMREASSL---FDAMPVKPVVVCNEMIM 280

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
            +   G V  A  VF  M  ++  +WSAMI  Y R G   EAL LFR M  E   L  N 
Sbjct: 281 GFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREG--LALNF 338

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            +++SVL  C +LA+L+ GK +H  ++R   D  L V S L+TMY +CG L   + VF+ 
Sbjct: 339 PSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNR 398

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
              +DVV WNS+I+ Y  HG G +A+ +F +M   GV P  ++F+ VL ACS++G V+EG
Sbjct: 399 FPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEG 458

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
             LFE+M+ ++ + P +EHYAC+VDLLGRA+++ EA K++E + +EP   VWG+LLG+CR
Sbjct: 459 LELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACR 518

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
            H  ++LAE A ++L +LEP NAG YVLL+++YA    W +V+ ++  ++AR + K+PG 
Sbjct: 519 THMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGC 578

Query: 531 SRIEVKRKMYSFVSVD-EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKER 589
           S IEV++K++ F   D + HP+   +  +L  L   ++E GY P    VL+D+D EEK  
Sbjct: 579 SWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTH 638

Query: 590 IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
            +  HSEKLAVA+GL+   +G  IR+ KNLR+C DCHS  K I+K   +EI++RD NRFH
Sbjct: 639 SLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFH 698

Query: 650 HFRNGVCSCGDYW 662
           HF++G CSC DYW
Sbjct: 699 HFKDGHCSCKDYW 711



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 118/249 (47%), Gaps = 35/249 (14%)

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM----IMESHDLCPNSVTMVSV 296
           A  +F +M  +N VSW+ +I+ + +NGM  EA  +F  M    ++    +    V    V
Sbjct: 74  ALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDV 133

Query: 297 LQACAALAALEQGKMIH-----GYILRRG-------LDSILP-----VVSALVTMYARCG 339
            +A      +    ++      G +L+ G       L  ++P      V+ ++  Y   G
Sbjct: 134 AEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEG 193

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           +L+  + +FD M KR+VV+W +++S Y  +G    A ++F+ M       + +S+ ++L 
Sbjct: 194 RLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVM----PERNEVSWTAMLL 249

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEP 457
             +H+G + E   LF++M     ++P V    C  M+   G   ++++A ++ + ++ E 
Sbjct: 250 GYTHSGRMREASSLFDAMP----VKPVV---VCNEMIMGFGLNGEVDKARRVFKGMK-ER 301

Query: 458 GPKVWGSLL 466
               W +++
Sbjct: 302 DNGTWSAMI 310



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 118/251 (47%), Gaps = 36/251 (14%)

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
           Q+ ++   S S  IACYARNG    A ++F E  +    +   +  + +  +A     AL
Sbjct: 16  QVRLQCTTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREAL 75

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
               ++   + +R   S     + L++ + + G L   + VFD M  R+VVSW S++  Y
Sbjct: 76  ----LLFEKMPQRNTVSW----NGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGY 127

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
             +G   +A ++F  M +  V    +S+  +LG     G V++ + LF+ M ++ ++   
Sbjct: 128 VRNGDVAEAERLFWHMPHKNV----VSWTVMLGGLLQEGRVDDARKLFDMMPEKDVV--- 180

Query: 427 VEHYACMVDLLG---RANKLEEAAKIIEDLRIEPGPK----VWGSLLGSCRIHCNVELAE 479
                 + +++G      +L+EA  + +++     PK     W +++     +  V++A 
Sbjct: 181 -----AVTNMIGGYCEEGRLDEARALFDEM-----PKRNVVTWTAMVSGYARNGKVDVA- 229

Query: 480 RASKRLFELEP 490
              ++LFE+ P
Sbjct: 230 ---RKLFEVMP 237


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/592 (39%), Positives = 339/592 (57%), Gaps = 22/592 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P   T+   + SC   +       +H H+   G   +PF+ T LI++Y     +D+AR 
Sbjct: 7   SPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARK 66

Query: 137 VFDKT--RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           +FD+    R+    +N+L     L  R ++V+ L+  M   G  I         V    +
Sbjct: 67  LFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEING-------VTMLGL 119

Query: 195 ASSCGF-SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
              CG    L  G  +H   ++ G +    +   L+ MY + G +     +F +M  K +
Sbjct: 120 VQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGL 179

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           ++W+AMI  YA+NG+A   LEL++EM  ES   CP+ +T+V VL +CA L AL  GK + 
Sbjct: 180 ITWNAMINGYAQNGLANNVLELYKEM--ESKGFCPDPLTLVGVLSSCAHLGALSVGKEVE 237

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             +   G  S   + +ALV MYARCG L+  + +FD M  + VVSW ++I  YG+HG G 
Sbjct: 238 RKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGE 297

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
            A+ +F EMI  G+ P   +FVSVL ACSHAGL  +G   F  M +++ +RP  EHY+CM
Sbjct: 298 VAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCM 357

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLLGRA +L EA ++IE +++     +WG+LLG+C+IH NVELAE A +++ ELEPTN 
Sbjct: 358 VDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNT 417

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           G YVLL++VY  A   + + RV+ L+  R L+K PG S +E K +++ F + D  HPQ  
Sbjct: 418 GYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTN 477

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV--LG-HSEKLAVAFGLINTSKG 610
           +++  L  L   +K+     +        D E +E  +  +G HSEKLAVAF L+NT K 
Sbjct: 478 EIYKKLNELENLVKDLDGCKKN-------DHERREEYLNSMGVHSEKLAVAFALLNTRKE 530

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             I I KNLR+C DCH F K +SK  +++ +VRD  RFHHF+NG CSC +YW
Sbjct: 531 TEIIIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 158/304 (51%), Gaps = 10/304 (3%)

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
           +G   + FT+ + +K+C A     SL   GK++H  V + G      + T+LI MY +  
Sbjct: 4   SGASPNAFTFPFAIKSCAA----LSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCS 59

Query: 237 CVMYAGFVFSQ--MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            +  A  +F +   + K  V ++++++ YA N    + + LF EM     ++  N VTM+
Sbjct: 60  LIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEI--NGVTML 117

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
            ++Q C     L  G  +HG+ ++ GLD    V + L+TMY + G+++ G+ +FD M ++
Sbjct: 118 GLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRK 177

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
            +++WN++I+ Y  +G     ++++KEM   G  P P++ V VL +C+H G +  GK + 
Sbjct: 178 GLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVE 237

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
             M           + A +V++  R   L++A  I + + ++     W +++G   +H  
Sbjct: 238 RKMEGFGFSSNPFLNNA-LVNMYARCGNLKKARDIFDGMPVKS-VVSWTAIIGGYGMHGQ 295

Query: 475 VELA 478
            E+A
Sbjct: 296 GEVA 299


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/440 (46%), Positives = 290/440 (65%), Gaps = 4/440 (0%)

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM-IME 282
           +   L+DMYA+ G   YA  VF +M  K+V+SW++++     NG   EAL LF EM IM 
Sbjct: 4   VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
            H   P+ + + +VL ACA L  LE GK +H   L+ GL S L V ++LV+MYA+CG +E
Sbjct: 64  IH---PDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIE 120

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
               VFD M+ +DV++W +LI  Y  +G G +++  + +MI  GV P  I+F+ +L ACS
Sbjct: 121 DANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACS 180

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
           HAGLVE G+  F+SM + + I+P  EHYACM+DLLGR+ KL EA +++  + ++P   VW
Sbjct: 181 HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVW 240

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
            +LL +CR+H NVEL ERA+  LFELEP NA  YVLL+++Y+AA  W+E  + +RL++ R
Sbjct: 241 KALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLR 300

Query: 523 GLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
           G+ K PG S IE+  K++ F+S D  HP+  ++++ +  +   +KE GYVP     L+D+
Sbjct: 301 GVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDM 360

Query: 583 DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILV 642
           D E KE  +  HSEKLAVAFGL+    G  IRI KNLR+C DCH+  K++S   ++ +++
Sbjct: 361 DEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVIL 420

Query: 643 RDVNRFHHFRNGVCSCGDYW 662
           RD N FHHFR G CSC DYW
Sbjct: 421 RDSNCFHHFREGACSCSDYW 440



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 18/256 (7%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           L+++Y+     D A  VF+K   + +  W +L       G  EE L L+  M   G  I 
Sbjct: 8   LVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG--IH 65

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D+     VL AC       ++L+ GK++HA+ L+ G    + +  +L+ MYA+ GC+  
Sbjct: 66  PDQIVIAAVLSACAE----LTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIED 121

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF  M +++V++W+A+I  YA+NG   E+L  + +MI  +  + P+ +T + +L AC
Sbjct: 122 ANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMI--ASGVKPDFITFIGLLFAC 179

Query: 301 AALAALEQGK-----MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KR 354
           +    +E G+     M   Y ++ G +      + ++ +  R GKL   + + + M  + 
Sbjct: 180 SHAGLVEHGRSYFQSMEEVYGIKPGPEH----YACMIDLLGRSGKLMEAKELLNQMAVQP 235

Query: 355 DVVSWNSLISSYGVHG 370
           D   W +L+++  VHG
Sbjct: 236 DATVWKALLAACRVHG 251



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 8/187 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P Q     +L +C     L     VH++   +G      +   L+++Y+    ++DA  
Sbjct: 65  HPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANK 124

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD    + +  W AL       GRG E L  Y  M    +G++ D  T+  +L AC  +
Sbjct: 125 VFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBM--IASGVKPDFITFIGLLFACSHA 182

Query: 197 SCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVV 254
                L++HG+    S+   +G          +ID+  R G +M A  + +QMAV+ +  
Sbjct: 183 ----GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDAT 238

Query: 255 SWSAMIA 261
            W A++A
Sbjct: 239 VWKALLA 245


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/646 (34%), Positives = 358/646 (55%), Gaps = 55/646 (8%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I +L K G +R+ALD++       + P+ T  TY   L +C   +SL     +H  +
Sbjct: 260 NMVISALSKSGRVREALDMVVDMHGKGVRPDST--TYTSSLTACARLSSLEWGKQLHVQV 317

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             N    DP++ + ++ +Y+      +A+ VF   R R    W  L       G   E +
Sbjct: 318 IRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESV 377

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL+ +M      +  D+F    ++  C    C    +  G ++H+  L+ G+   V +  
Sbjct: 378 ELFNQMRAELMAV--DQFALATLISGC----CNTMDICLGSQLHSLCLKSGHTRAVVVSN 431

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM------- 279
           +LI MYA+ G +  A  +F+ MA +++VSW+ MI  Y++ G   +A E F +M       
Sbjct: 432 SLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVIT 491

Query: 280 -----------------------IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
                                  ++   D+ P+ VT V++ + CA + A + G  I G+ 
Sbjct: 492 WNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHT 551

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++ GL     VV+A++TMY++CG++   +  FD + ++D+VSWN++I+ Y  HG G +AI
Sbjct: 552 VKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAI 611

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           +IF +++  G  P  IS+V+VL  CSH+GLVEEGK  F+ M+++H I P +EH++CMVDL
Sbjct: 612 EIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDL 671

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA  L EA  +I+++ ++P  +VWG+LL +C+ H N +LAE A+K LF+L+   +G Y
Sbjct: 672 LGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGY 731

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           +LLA +YA A   D+  +V++L+  +G++K PG S +EV  +++ F + D  HPQ   + 
Sbjct: 732 MLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIR 791

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  L  ++   GYV             E  R  + HSEKLAVAFG+++      I I 
Sbjct: 792 EKLDELMEKIAHLGYVRT-----------ESPRSEIHHSEKLAVAFGIMSLPAWMPIHIM 840

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C+DCH+  K IS   ++E ++RD  RFHHF+ G CSC DYW
Sbjct: 841 KNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 159/309 (51%), Gaps = 12/309 (3%)

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
           Y+    VD A  +F     R +  WN +  AL+ +GR  E L++   M+G G  +R D  
Sbjct: 235 YAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKG--VRPDST 292

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           TYT  L AC       S L+ GK++H  V+R+  +   ++ + ++++YA+ GC   A  V
Sbjct: 293 TYTSSLTACAR----LSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRV 348

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           FS +  +N VSW+ +I  + + G   E++ELF +M  E   +  +   + +++  C    
Sbjct: 349 FSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAEL--MAVDQFALATLISGCCNTM 406

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
            +  G  +H   L+ G    + V ++L++MYA+CG L+  + +F+ M +RD+VSW  +I+
Sbjct: 407 DICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMIT 466

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
           +Y   G   KA + F +M    V    I++ ++LGA    G  E+G  ++  M  E  + 
Sbjct: 467 AYSQVGNIAKAREFFDDMSTRNV----ITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVI 522

Query: 425 PSVEHYACM 433
           P    Y  +
Sbjct: 523 PDWVTYVTL 531



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 127/281 (45%), Gaps = 38/281 (13%)

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
           N I H    +++ YA+ G +  A  +F +M  ++V SW+ +++ Y ++G    AL++F  
Sbjct: 91  NVITH--NIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVS 148

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M  ++ D  PN+ T   V+++C AL   E    + G + +        V +ALV M  RC
Sbjct: 149 M-RQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRC 207

Query: 339 GKLELGQ------------C-------------------VFDHMDKRDVVSWNSLISSYG 367
           G ++               C                   +F  M +RDVVSWN +IS+  
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALS 267

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML-FESMRKEHMIRPS 426
             G   +A+ +  +M   GV P   ++ S L AC+    +E GK L  + +R    I P 
Sbjct: 268 KSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPY 327

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           V   + MV+L  +    +EA ++   LR +     W  L+G
Sbjct: 328 VA--SAMVELYAKCGCFKEAKRVFSSLR-DRNSVSWTVLIG 365



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 36/190 (18%)

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL----------- 341
           +   L++C A +AL   + +H  ++  GL S++ + + L+  Y  CG L           
Sbjct: 28  LADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEI 87

Query: 342 ----------------ELGQC-----VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
                           +LG       +F  M  RDV SWN+++S Y   G    A+ IF 
Sbjct: 88  TEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFV 147

Query: 381 EMIYHGVS-PSPISFVSVLGACSHAGLVEEGKMLFESMRK-EHMIRPSVEHYACMVDLLG 438
            M   G S P+  +F  V+ +C   G  E    L   + K +    P V+    +VD+L 
Sbjct: 148 SMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQ--TALVDMLV 205

Query: 439 RANKLEEAAK 448
           R   ++ A+K
Sbjct: 206 RCGAMDFASK 215


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 336/574 (58%), Gaps = 25/574 (4%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDARHVFDKTRR 143
           L+  C+    L     +H+ +   G   DPF  ++LI     S F S+D A+ VFD+   
Sbjct: 41  LIDQCSETKQLK---QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPH 97

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
             +Y WN L RA   +    + L ++ RM         D+FT+ +++KA       F+  
Sbjct: 98  PNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDF-PDKFTFPFLIKAASELEELFT-- 154

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
             GK  H  V++      V I+ +LI  YA+ G +     VF     ++VVSW++MI  +
Sbjct: 155 --GKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAF 212

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
            + G   EALELF+EM  E+ ++ PN +TMV VL ACA  +  E G+ +H YI R  +  
Sbjct: 213 VQGGCPEEALELFQEM--ETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXE 270

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG------------VHGY 371
            L + +A++ MY +CG +E  + +FD M ++D+VSW +++  Y             +HG+
Sbjct: 271 SLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGH 330

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
           G  AI +F +M    V P+ ++F ++L ACSH GLVEEG+  F  M   + + P V+HYA
Sbjct: 331 GKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYA 390

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           CMVD+LGRA  LEEA ++IE + + P   VWG+LLG+C IH NV LAE+A  +L ELEP 
Sbjct: 391 CMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPG 450

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
           N G YVLL+++YA A  WD V  +++L+   GL+K PG S IEV   ++ F+  D  HP 
Sbjct: 451 NHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPS 510

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE-KERIVLGHSEKLAVAFGLINTSKG 610
            ++++A L  + A ++  GYVP    +L  ++ E+ KE+ +  HSEKLA+AFGLI+T + 
Sbjct: 511 AKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQS 570

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           + IRI KNLR+C DCHS  K +SK  ++EIL+RD
Sbjct: 571 QPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRD 604



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 152/338 (44%), Gaps = 31/338 (9%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPN-PTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N LI++     N  Q+L +    L   P+ P + T+  L+ + +    L      H  + 
Sbjct: 104 NTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVI 163

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
                 D F++  LI+ Y+    +     VF    RR +  WN++  A    G  EE LE
Sbjct: 164 KVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALE 223

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L++ M      ++ +  T   VL AC   S      + G+ +H+ + R+     + +   
Sbjct: 224 LFQEME--TQNVKPNGITMVGVLSACAKKSD----FEFGRWVHSYIERNRIXESLTLSNA 277

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR-------NGMAF-----EALEL 275
           ++DMY + G V  A  +F +M  K++VSW+ M+  YA+        G+A      +A+ L
Sbjct: 278 MLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIAL 337

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALV 332
           F +  M+   + PN+VT  ++L AC+ +  +E+G+     +    +  +LP V   + +V
Sbjct: 338 FSK--MQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQM--ELVYGVLPGVKHYACMV 393

Query: 333 TMYARCGKLELGQCVFDHMDKRDVVS-WNSLISSYGVH 369
            +  R G LE    + + M      S W +L+ +  +H
Sbjct: 394 DILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIH 431


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/583 (38%), Positives = 350/583 (60%), Gaps = 13/583 (2%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDARHVFDK 140
           + LLL  C+   S S    + ++L  NG        TKL+ +   S F  +  A H+F  
Sbjct: 4   FNLLLQKCS---SFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRY 60

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
               +   WNA+ R   L+      +  YR M  +    R D  T ++ LKAC  +    
Sbjct: 61  IPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALA-- 118

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
                  ++H+ +LR G+N  V + TTL+D YA+ G +  A  +F +M   ++ SW+A+I
Sbjct: 119 --RSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALI 176

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           A +A+     +A+  F+ M ++  +L PN+VT+   L AC+ L AL++G+ +H YI+   
Sbjct: 177 AGFAQGSRPADAIMTFKRMKVDG-NLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEK 235

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIF 379
           LDS + V + ++ MYA+CG ++    VF++M   + +++WN++I ++ +HG G KA+ +F
Sbjct: 236 LDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLF 295

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           +++   G+SP  +S+++VL AC+HAGLVE+G  LF SM +  +  P+++HY  MVDLLGR
Sbjct: 296 EKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGL-EPNIKHYGSMVDLLGR 354

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           A +L+EA  I+  L   P   +W +LLG+CR + +VE+AE AS++L E+   + G +VLL
Sbjct: 355 AGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGXFVLL 413

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           ++VYAA   WD+V RV+  +  R ++K PG S IE+K KMY FV+ D+ H    +++A L
Sbjct: 414 SNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKL 473

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
             ++  +K  GY   T  VL+D+  E+KE  +  HSEKLAVAFGL  T +G  I++ KNL
Sbjct: 474 DEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNL 533

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCH   K ISK   +EI+VRD  RFH F+ G+CSC DYW
Sbjct: 534 RICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 143/290 (49%), Gaps = 8/290 (2%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T    L +C    + S+A+ +HS L   GF+ D  L T L++ Y+    +D A+ +FD+ 
Sbjct: 105 TCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEM 164

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
            +  I  WNAL        R  + +  ++RM   G  +R +  T    L AC        
Sbjct: 165 PQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGN-LRPNAVTVQGALLACSQ----LG 219

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNVVSWSAMI 260
            LK G+ +H  ++    +  V +   +IDMYA+ G +  A +VF  M   K++++W+ MI
Sbjct: 220 ALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMI 279

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             +A +G   +AL+LF +  +    + P++V+ ++VL AC     +E G  +   + +RG
Sbjct: 280 MAFAMHGDGHKALDLFEK--LGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRG 337

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
           L+  +    ++V +  R G+L+    +   +   ++V W +L+ +   +G
Sbjct: 338 LEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLLGACRTYG 387



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 97/203 (47%), Gaps = 19/203 (9%)

Query: 62  QGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKL 121
            GNLR           P   T +  LL+C+   +L +  +VH ++ +   D +  +   +
Sbjct: 198 DGNLR-----------PNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVV 246

Query: 122 INVYSHFDSVDDARHVFDKTR-RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           I++Y+   S+D A  VF+  R  +++  WN +  A  + G G + L+L+ ++    +G+ 
Sbjct: 247 IDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLG--RSGMS 304

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D  +Y  VL AC  +     L++ G ++  S+ + G    +    +++D+  R G +  
Sbjct: 305 PDAVSYLAVLCACNHA----GLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKE 360

Query: 241 AGFVFSQMAVKNVVSWSAMI-AC 262
           A  + S +   N+V W  ++ AC
Sbjct: 361 AYDIVSSLPFPNMVLWQTLLGAC 383


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/581 (37%), Positives = 346/581 (59%), Gaps = 9/581 (1%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
            +E+L L C  + ++ +A   H  +     + D  L+  LIN YS    V+ AR VFD  
Sbjct: 64  VHEILQL-CARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGM 122

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             R++  WN +    T      E L+++  M   G   +   FT + VL AC  +     
Sbjct: 123 LERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEG--FKFSEFTISSVLSACGVNCDALE 180

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
                K++H   ++   +  +++ T L+D+YA+ G +  A  VF  M  K+ V+WS+M+A
Sbjct: 181 C----KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVA 236

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            Y +N    EAL L+R    +   L  N  T+ SV+ AC+ LAAL +GK +H  I + G 
Sbjct: 237 GYVQNKNYEEALLLYRRA--QRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGF 294

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
            S + V S+ V MYA+CG L     +F  + ++++  WN++IS +  H    + + +F++
Sbjct: 295 GSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEK 354

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   G+ P+ ++F S+L  C H GLVEEG+  F+ MR  + + P+V HY+CMVD+LGRA 
Sbjct: 355 MQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAG 414

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
            L EA ++I+ +  +P   +WGSLL SCR++ N+ELAE A+++LFELEP NAGN+VLL++
Sbjct: 415 LLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSN 474

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YAA   W+E+ + ++LL    ++KV G+S I++K K+++F   +  HP+  ++ + L N
Sbjct: 475 IYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDN 534

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           L  + ++ GY P  +  L+D++  +KE +++ HSEKLA+ FGL+   +   +RI KNLR+
Sbjct: 535 LVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRI 594

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCH F K  S    + I+VRDVNRFHHF +G CSCGD+W
Sbjct: 595 CVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 155/341 (45%), Gaps = 29/341 (8%)

Query: 37  SLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNP----TQHTYELLLLSCTH 92
           SL S  T   L +RN+ E            +ALD+     N     ++ T   +L +C  
Sbjct: 126 SLVSWNTMIGLYTRNRME-----------SEALDIFLEMRNEGFKFSEFTISSVLSACGV 174

Query: 93  HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
           +    +   +H        D + ++ T L+++Y+    + DA  VF+  + ++   W+++
Sbjct: 175 NCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSM 234

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
                     EE L LYRR       +  ++FT + V+ AC       + L  GK++HA 
Sbjct: 235 VAGYVQNKNYEEALLLYRR--AQRMSLEQNQFTLSSVICAC----SNLAALIEGKQMHAV 288

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
           + + G+   V + ++ +DMYA+ G +  +  +FS++  KN+  W+ +I+ +A++    E 
Sbjct: 289 ICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEV 348

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---S 329
           + LF +  M+   + PN VT  S+L  C     +E+G+    + L R    + P V   S
Sbjct: 349 MILFEK--MQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRF--FKLMRTTYGLSPNVVHYS 404

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVS-WNSLISSYGVH 369
            +V +  R G L     +   +      S W SL++S  V+
Sbjct: 405 CMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVY 445


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/633 (35%), Positives = 356/633 (56%), Gaps = 36/633 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N ++    + G + +A  +        + ++  LL +   +  + DA      L D+  D
Sbjct: 157 NAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDA----RRLFDSKMD 212

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            +      L+  Y     +DDAR +FD+   R    WN +       G   E   L+  +
Sbjct: 213 WEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL 272

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSC------GFSLLKHGKEIHASVLRHGYNGIVHI-- 224
                 IR D F +T ++   V +         F  +    E+  + +  GY     I  
Sbjct: 273 P-----IR-DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEK 326

Query: 225 ---------------MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
                            T++  YA+ G +  A  +F +M  ++ +SW+AMI+ YA++G +
Sbjct: 327 ARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQS 386

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EAL LF +M  +   L  N   +   L +CA +AALE GK +HG +++ G  +     +
Sbjct: 387 EEALHLFIKMKRDGGIL--NRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGN 444

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           AL+ MY +CG +E    VF+ + ++D+VSWN++I+ Y  HG+G +A+ +F+ M    + P
Sbjct: 445 ALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKP 503

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
             ++ V VL ACSH GLV++G   F SM + + I  + +HY CM+DLLGRA +L+EA  +
Sbjct: 504 DDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNL 563

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
           ++ +   P    WG+LLG+ RIH + EL E+A++++FE+EP N+G YVLL+++YAA+  W
Sbjct: 564 MKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRW 623

Query: 510 DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569
            EV+ ++  +  +G++KVPG S +E++ K + F   D  HP+ E+++A L  L  E+K+ 
Sbjct: 624 REVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKD 683

Query: 570 GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
           G+V  TK+VL+D++ EEKE ++  HSEKLAVAFG+++   G  IR+ KNLR+CEDCH+  
Sbjct: 684 GFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAI 743

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K ISK   ++I+VRD NRFHHF  G CSCGDYW
Sbjct: 744 KHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 155/397 (39%), Gaps = 54/397 (13%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           +I+ Y   +  D AR VF+K   R +  WN +       G       L+ +M        
Sbjct: 97  MISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP------E 150

Query: 181 SDRFTYTYVLKACVASSCG------FSLLKHGKEIHASVLRHGY--NGIVHIMTTLIDM- 231
            D  ++  +L     +         F  +    EI  + L   Y  NG +     L D  
Sbjct: 151 KDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSK 210

Query: 232 ----YARFGCVMYAGFV-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
                  + C+M  G+V           F +M V++ +SW+ MI  YA+NG+  EA  LF
Sbjct: 211 MDWEIVSWNCLM-GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLF 269

Query: 277 REMIMES--------HDLCPNSV--TMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
            E+ +               N +      + +       +    MI GY+  + ++    
Sbjct: 270 EELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARE 329

Query: 327 VV-----------SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           +            + +VT YA+CG ++  + +FD M +RD +SW ++IS Y   G   +A
Sbjct: 330 LFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEA 389

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           + +F +M   G   +  +    L +C+    +E GK L   + K       +   A +  
Sbjct: 390 LHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLA- 448

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           + G+   +EEA  + ED+  E     W +++     H
Sbjct: 449 MYGKCGSIEEAFDVFEDI-TEKDIVSWNTMIAGYARH 484



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 124/271 (45%), Gaps = 25/271 (9%)

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
           S +   ++V W+  I+ Y R G    AL +F  M   S      +VT  +++    +   
Sbjct: 53  STIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRS------TVTYNAMISGYLSNNK 106

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
            +  + +   +  R L S     + +++ Y + G L   + +F+ M ++DVVSWN+++S 
Sbjct: 107 FDCARKVFEKMPDRDLISW----NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSG 162

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           +  +G+  +A +IF +M+      + IS+  +L A    G +E+ + LF+S     ++  
Sbjct: 163 FAQNGFVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIV-- 216

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
               + C++    R  +L++A  + + + +      W  ++       N  L+E  ++RL
Sbjct: 217 ---SWNCLMGGYVRKKRLDDARSLFDRMPVRDKIS-WNIMITG--YAQNGLLSE--ARRL 268

Query: 486 FELEPT-NAGNYVLLADVYAAADMWDEVKRV 515
           FE  P  +   +  +   +    M DE  R+
Sbjct: 269 FEELPIRDVFAWTAMVSGFVQNGMLDEATRI 299



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 125/281 (44%), Gaps = 28/281 (9%)

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           +F C   A  VF +M  ++++SW+ M++ Y +NG    A  LF +M  +      + V+ 
Sbjct: 106 KFDC---ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEK------DVVSW 156

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
            ++L   A    +E+ + I   +L +   S     + L++ Y + G++E  + +FD    
Sbjct: 157 NAMLSGFAQNGFVEEARKIFDQMLVKNEISW----NGLLSAYVQNGRIEDARRLFDSKMD 212

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
            ++VSWN L+  Y        A  +F  M         IS+  ++   +  GL+ E + L
Sbjct: 213 WEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRL 268

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
           FE    E  IR  V  +  MV    +   L+EA +I E++  E     W +++       
Sbjct: 269 FE----ELPIR-DVFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQ 322

Query: 474 NVELAERASKRLFELEPT-NAGNYVLLADVYAAADMWDEVK 513
            +E A    + LF+  P+ N  ++  +   YA     D+ K
Sbjct: 323 QIEKA----RELFDQMPSRNTSSWNTMVTGYAQCGNIDQAK 359


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/643 (36%), Positives = 375/643 (58%), Gaps = 39/643 (6%)

Query: 51  NKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           + NE   +LC +G++R+A +    E       +  LL +C    S+S    +HS +  +G
Sbjct: 40  DGNEQFATLCSKGHIREAFESFLSEIWAEPRLFSNLLQACIPLKSVSLGKQLHSLIFTSG 99

Query: 111 FDQDPFLVTKLINVYSHF-------------------------------DSVDDARHVFD 139
              D F+   L+N+YS F                                +++ A+++FD
Sbjct: 100 CSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFD 159

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           +   R +  WNA+   LT     EE L L+ RMN        D ++   VL+ C      
Sbjct: 160 EMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMN--ELSFMPDEYSLGSVLRGCAH---- 213

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
              L  G+++HA V++ G+   + +  +L  MY + G +     V + M   ++V+W+ +
Sbjct: 214 LGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTL 273

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           ++  A+ G  FE + L +  +M+     P+ +T VSV+ +C+ LA L QGK IH   ++ 
Sbjct: 274 MSGKAQKGY-FEGV-LDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKA 331

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           G  S + VVS+LV+MY+RCG L+     F    +RDVV W+S+I++YG HG G +AI++F
Sbjct: 332 GASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLF 391

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
            EM    +  + I+F+S+L ACSH GL ++G  LF+ M K++ ++  ++HY C+VDLLGR
Sbjct: 392 NEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGR 451

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           +  LEEA  +I  + ++    +W +LL +C+IH N E+A R +  +  ++P ++ +YVLL
Sbjct: 452 SGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLL 511

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           A++Y++A+ W  V  V+R ++ + ++K PG S +EVK +++ F   DE HP+  +++  L
Sbjct: 512 ANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYL 571

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
             L++E+K +GYVP T  VL+D+D EEKE+I+  HSEKLA+AF L+NT +G  IR+ KNL
Sbjct: 572 EELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNL 631

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCH   K+IS+    EI+VRD +RFHHF+NG CSCGDYW
Sbjct: 632 RVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/621 (37%), Positives = 365/621 (58%), Gaps = 30/621 (4%)

Query: 50  RNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDN 109
           R    L   +C QG          + PN    T    LL+CT   +L+    ++  +   
Sbjct: 115 RGAATLFHWMCSQG----------VRPNAV--TLSTALLACTAARNLALGRKLNELIASE 162

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
             + D  + + LI +Y     +++A   FD++  + +  W A+  A     R    LEL 
Sbjct: 163 ALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELV 222

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT-TL 228
           RRM+  G  I+    TY  +L AC ++      L++G   H      G +    ++  TL
Sbjct: 223 RRMDLEG--IKLGLPTYVSLLDACASTM----DLRNGVAFHQRAAAIGLDRSSTVVAGTL 276

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +++Y + G V  A  V   M V+  VSW+AMIA YA+NG A EA+ LF+ M +E  +  P
Sbjct: 277 VNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAE--P 334

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCV 347
           + +T++SV+ +CA L  L  GK IH  I         L +++A++TMY +CG LEL + V
Sbjct: 335 SDITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREV 394

Query: 348 FD--HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM-IYHGVSPSPISFVSVLGACSHA 404
           F+   +  R VV+W ++I +Y  +G G +AI++F+EM I  G  P+ ++F+SVL ACSH 
Sbjct: 395 FECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHL 454

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR---IEPGPKV 461
           G +E+    F SM  +  + P+ +HY C+VDLLGRA +L EA K++  LR    E     
Sbjct: 455 GQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLL--LRHKDFEADVVC 512

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W + L +C+++ ++E ++RA+KR+ ELEP N    VLL++VYAA     +V R++  +++
Sbjct: 513 WIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKS 572

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
            G++K  GRS IE+  +++ F+  D  HP+  ++++ L  L  E+KE GYVP TK+VL D
Sbjct: 573 SGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRD 632

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           +D E+K +++  HSE+LA+A G+I+T  G T+R+ KNLR+C DCH+ TKFIS+   ++I+
Sbjct: 633 VDEEKKVQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQII 692

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           VRD +RFHHF++GVCSCGDYW
Sbjct: 693 VRDTSRFHHFKDGVCSCGDYW 713



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 171/370 (46%), Gaps = 12/370 (3%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  LL  C     L +   +H+ +     D++ FL   L++ YS   S+  A+  F +  
Sbjct: 38  YASLLWQC---RGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRIT 94

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
               + WN L  A    G       L+  M     G+R +  T +  L AC A+      
Sbjct: 95  LHNAHSWNILMAAYAQNGHPRGAATLFHWM--CSQGVRPNAVTLSTALLACTAARN---- 148

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L  G++++  +         H+ ++LI MY R   +  A   F +   K+VV W+AMI+ 
Sbjct: 149 LALGRKLNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISA 208

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           YA N     ALEL R M +E   L     T VS+L ACA+   L  G   H      GLD
Sbjct: 209 YAHNWRTSRALELVRRMDLEGIKL--GLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLD 266

Query: 323 SILPVVSA-LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
               VV+  LV +Y +CG+++  + V D M  R  VSW ++I++Y  +G   +AI +F+ 
Sbjct: 267 RSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQC 326

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   G  PS I+ +SV+ +C+  G +  GK +   +R       S+     ++ + G+  
Sbjct: 327 MDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCG 386

Query: 442 KLEEAAKIIE 451
            LE A ++ E
Sbjct: 387 NLELAREVFE 396



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 134/266 (50%), Gaps = 3/266 (1%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L   +++HA +     +    +   L+D Y++ G +  A   F ++ + N  SW+ ++A 
Sbjct: 48  LDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNILMAA 107

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           YA+NG    A  LF  M   S  + PN+VT+ + L AC A   L  G+ ++  I    L+
Sbjct: 108 YAQNGHPRGAATLFHWMC--SQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALE 165

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
               V S+L+TMY RC ++E  +  FD   ++DVV W ++IS+Y  +    +A+++ + M
Sbjct: 166 IDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRM 225

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              G+     ++VS+L AC+    +  G    +      + R S      +V+L G+  +
Sbjct: 226 DLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGR 285

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGS 468
           +++A ++++ + +      W +++ +
Sbjct: 286 VDDARRVLDAMPVRTSVS-WTAMIAA 310


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/551 (37%), Positives = 343/551 (62%), Gaps = 12/551 (2%)

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           D F+ + L+++Y+ FD + DA  VF +   + + ++ AL       G   E L+++  M 
Sbjct: 136 DGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDM- 194

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
               G++ + +T      AC+  +CG    L +G+ IH  V++ G   +V   T+L+ MY
Sbjct: 195 -VNRGVKPNEYTL-----ACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMY 248

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           +R   +  +  VF+Q+   N V+W++ +    +NG    A+ +FREMI  S  + PN  T
Sbjct: 249 SRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCS--ISPNPFT 306

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           + S+LQAC++LA LE G+ IH   ++ GLD      +AL+ +Y +CG ++  + VFD + 
Sbjct: 307 LSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLT 366

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
           + DVV+ NS+I +Y  +G+G +A+++F+ +   G+ P+ ++F+S+L AC++AGLVEEG  
Sbjct: 367 ELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQ 426

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           +F S+R  H I  +++H+ CM+DLLGR+ +LEEAA +IE++R  P   +W +LL SC+IH
Sbjct: 427 IFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIH 485

Query: 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
             VE+AE+   ++ EL P + G ++LL ++YA+A  W++V  +K  +    L+K P  S 
Sbjct: 486 GEVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSW 545

Query: 533 IEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVL 592
           ++V R++++F++ D  HP+  ++  +L  L  ++K  GY P T+ VL DLD E+K   + 
Sbjct: 546 VDVDREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLY 605

Query: 593 GHSEKLAVAFGLINT-SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
            HSEKLA+A+ L  T  +  TIRI KNLR+C DCHS+ KF+S    ++I+ RD  RFHHF
Sbjct: 606 YHSEKLAIAYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHF 665

Query: 652 RNGVCSCGDYW 662
           + G+CSC DYW
Sbjct: 666 KGGLCSCKDYW 676



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 205/374 (54%), Gaps = 15/374 (4%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  L+    H  SL+    VH+++  +GF    FL  KLI+ Y    S+ +AR +FD+  
Sbjct: 4   YSSLIAQSAHTKSLTTLRAVHTNVIKSGFSY-SFLGHKLIDGYIKCGSLAEARKLFDELP 62

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
            R I  WN++  +    G+ +E +E Y  M     G+  D +T++ + KA   S  G  L
Sbjct: 63  SRHIVTWNSMISSHISHGKSKEAVEFYGNM--LMEGVLPDAYTFSAISKAF--SQLG--L 116

Query: 203 LKHGKEIHASVLRHG---YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
           ++HG+  H   +  G    +G V   + L+DMYA+F  +  A  VF ++  K+VV ++A+
Sbjct: 117 IRHGQRAHGLAVVLGLEVLDGFV--ASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTAL 174

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I  YA++G+  EAL++F +M+  +  + PN  T+  +L  C  L  L  G++IHG +++ 
Sbjct: 175 IVGYAQHGLDGEALKIFEDMV--NRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKS 232

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           GL+S++   ++L+TMY+RC  +E    VF+ +D  + V+W S +     +G    A+ IF
Sbjct: 233 GLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIF 292

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           +EMI   +SP+P +  S+L ACS   ++E G+ +  ++  +  +  +    A +++L G+
Sbjct: 293 REMIRCSISPNPFTLSSILQACSSLAMLEVGEQI-HAITMKLGLDGNKYAGAALINLYGK 351

Query: 440 ANKLEEAAKIIEDL 453
              +++A  + + L
Sbjct: 352 CGNMDKARSVFDVL 365


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/569 (39%), Positives = 338/569 (59%), Gaps = 15/569 (2%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF-DKTRRRTIYVWNALFRALTLA 159
            +HS    +GFD    +   L+  Y     +DDA+ VF      R    WN++  A    
Sbjct: 159 QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQH 218

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
             G + L L++ M     G+  D FT   VL    A +C    L  G + H  +++ G++
Sbjct: 219 QEGSKALGLFQEM--VRRGLNVDMFTLASVL---TAFTC-LEDLSGGLQFHGQLIKTGFH 272

Query: 220 GIVHIMTTLIDMYARFGCVMY-AGFVFSQMAVKNVVSWSAMIACYARNGMAFE-ALELFR 277
              H+ + LID+Y++ G  M     VF ++   ++V W+ M++ Y++N    E ALE FR
Sbjct: 273 QNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFR 332

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI-LPVVSALVTMYA 336
           +M  +     PN  + V V+ AC+ L++  QGK IH   L+  + S  + V +AL+ MY+
Sbjct: 333 QM--QGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYS 390

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CG L+  + +FD M + + VS NS+I+ Y  HG   +++ +F+ M+   ++P+ I+F+S
Sbjct: 391 KCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFIS 450

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           VL AC+H G VEEG   F  M+++  I P  EHY+CM+DLLGRA KL EA  +I  +   
Sbjct: 451 VLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFN 510

Query: 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516
           PG   W SLLG+CR H N+ELA +A+ ++ +LEP+NA  YV+L+++YA+A  W+EV  V+
Sbjct: 511 PGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVR 570

Query: 517 RLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTK 576
           + +  RG++K PG S IEVK++++ FV+ D  HP  ++++  L  +S +MK  GYVP  +
Sbjct: 571 KFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVR 630

Query: 577 VVLYDLDAE---EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
             L   D     EKE  +  HSEKLAVAFGLI+T  GE + + KNLR+C DCH+  KFIS
Sbjct: 631 WALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFIS 690

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             A +EI VRD +RFH F+ G CSCGDYW
Sbjct: 691 AIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 141/299 (47%), Gaps = 13/299 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF-DSVDDAR 135
           N    T   +L + T    LS  L  H  L   GF Q+  + + LI++YS     + D R
Sbjct: 237 NVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCR 296

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRG-EEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
            VF++     + +WN +    +      E+ LE +R+M   G G R +  ++  V+ AC 
Sbjct: 297 KVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQ--GIGYRPNDCSFVCVISAC- 353

Query: 195 ASSCGFSLLKHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                 S    GK+IH+  L+    +  + +   LI MY++ G +  A  +F +MA  N 
Sbjct: 354 ---SNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNT 410

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VS ++MIA YA++G+  E+L LF+ M+     + P S+T +SVL ACA    +E+G    
Sbjct: 411 VSLNSMIAGYAQHGIEMESLHLFQWML--ERQIAPTSITFISVLSACAHTGRVEEGWNYF 468

Query: 314 GYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
             +  +  ++      S ++ +  R GKL   + +   M      + W SL+ +   HG
Sbjct: 469 NMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHG 527



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 139/317 (43%), Gaps = 49/317 (15%)

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
           + ++LK C+A       L  GK +H+  ++       +     I +Y++ G + +A   F
Sbjct: 11  FRHLLKTCIAER----DLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAF 66

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMI------------------------- 280
             ++  NV S++A+IA YA+      A +LF ++                          
Sbjct: 67  QDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALG 126

Query: 281 ----MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
               M    L  +  T+ +V+ AC     L     +H   +  G DS + V +AL+T Y 
Sbjct: 127 LFSGMREMGLDMDGFTLSAVITACCDDVGLI--GQLHSVAVSSGFDSYVSVNNALLTYYG 184

Query: 337 RCGKLELGQCVFDHMDK-RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           + G L+  + VF  M   RD VSWNS+I +YG H  G KA+ +F+EM+  G++    +  
Sbjct: 185 KNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLA 244

Query: 396 SVLGACS-----HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR-ANKLEEAAKI 449
           SVL A +       GL   G+++     +   +         ++DL  +    + +  K+
Sbjct: 245 SVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSG------LIDLYSKCGGGMSDCRKV 298

Query: 450 IEDLRIEPGPKVWGSLL 466
            E++  EP   +W +++
Sbjct: 299 FEEI-TEPDLVLWNTMV 314


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/583 (38%), Positives = 351/583 (60%), Gaps = 13/583 (2%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDARHVFDK 140
           + LLL  C+   S S    + ++L  NG        TKL+ +   S F  +  A H+F  
Sbjct: 4   FNLLLQKCS---SFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRY 60

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
               +   WNA+ R   L+      +  YR M  +    R D  T ++ LKAC  +    
Sbjct: 61  IPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALA-- 118

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
                  ++H+ +LR G+N  V + TTL+D YA+ G +  A  +F +M   ++ SW+A+I
Sbjct: 119 --RSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALI 176

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           A +A+     +A+  F+ M ++  +L PN+VT+   L AC+ L AL++G+ +H YI+   
Sbjct: 177 AGFAQGSRPADAIMTFKRMKVDG-NLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEK 235

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIF 379
           L+S + V + ++ MYA+CG ++    VF++M   + +++WN++I ++ +HG G KA+ +F
Sbjct: 236 LNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLF 295

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           +++   G+SP  +S+++VL AC+HAGLVE+G  LF SM +  +  P+++HY  MVDLLGR
Sbjct: 296 EKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGL-EPNIKHYGSMVDLLGR 354

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           A +L+EA  I+  L   P   +W +LLG+CR + +VE+AE AS++L E+   + G++VLL
Sbjct: 355 AGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGDFVLL 413

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           ++VYAA   WD+V RV+  +  R ++K PG S IE+K KMY FV+ D+ H    +++A L
Sbjct: 414 SNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKL 473

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
             ++  +K  GY   T  VL+D+  E+KE  +  HSEKLAVAFGL  T +G  I++ KNL
Sbjct: 474 DEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNL 533

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCH   K ISK   +EI+VRD  RFH F+ G+CSC DYW
Sbjct: 534 RICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 143/290 (49%), Gaps = 8/290 (2%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T    L +C    + S+A+ +HS L   GF+ D  L T L++ Y+    +D A+ +FD+ 
Sbjct: 105 TCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEM 164

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
            +  I  WNAL        R  + +  ++RM   G  +R +  T    L AC        
Sbjct: 165 PQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGN-LRPNAVTVQGALLACSQ----LG 219

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNVVSWSAMI 260
            LK G+ +H  ++    N  V +   +IDMYA+ G +  A +VF  M   K++++W+ MI
Sbjct: 220 ALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMI 279

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             +A +G   +AL+LF +  +    + P++V+ ++VL AC     +E G  +   + +RG
Sbjct: 280 MAFAMHGDGHKALDLFEK--LGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRG 337

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
           L+  +    ++V +  R G+L+    +   +   ++V W +L+ +   +G
Sbjct: 338 LEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLLGACRTYG 387



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 97/203 (47%), Gaps = 19/203 (9%)

Query: 62  QGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKL 121
            GNLR           P   T +  LL+C+   +L +  +VH ++ +   + +  +   +
Sbjct: 198 DGNLR-----------PNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVV 246

Query: 122 INVYSHFDSVDDARHVFDKTR-RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           I++Y+   S+D A  VF+  R  +++  WN +  A  + G G + L+L+ ++    +G+ 
Sbjct: 247 IDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLG--RSGMS 304

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D  +Y  VL AC  +     L++ G ++  S+ + G    +    +++D+  R G +  
Sbjct: 305 PDAVSYLAVLCACNHA----GLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKE 360

Query: 241 AGFVFSQMAVKNVVSWSAMI-AC 262
           A  + S +   N+V W  ++ AC
Sbjct: 361 AYDIVSSLPFPNMVLWQTLLGAC 383


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/505 (39%), Positives = 320/505 (63%), Gaps = 8/505 (1%)

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
           +   G++ LEL+  ++ +G   +SD+ T     KAC    C   LL  GK+IHA  ++ G
Sbjct: 7   IGNDGKKALELFSLIHKSGE--KSDQITLATAAKAC---GC-LVLLDQGKQIHAHAIKAG 60

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
           ++  +H+ + ++DMY + G ++ AG VF+ ++  + V+W++MI+    NG   +AL ++ 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
            M      + P+  T  ++++A + + ALEQG+ +H  +++    S   V ++LV MYA+
Sbjct: 121 RM--RQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAK 178

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           CG +E    +F  M+ R++  WN+++     HG   +A+ +FK M  HG+ P  +SF+ +
Sbjct: 179 CGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGI 238

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           L ACSHAGL  E      SM  ++ I P +EHY+C+VD LGRA  ++EA K+IE +  + 
Sbjct: 239 LSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKA 298

Query: 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
              +  +LLG+CRI  +VE  +R + RLF LEP ++  YVLL+++YAAA+ WD+V   ++
Sbjct: 299 SASINRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARK 358

Query: 518 LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKV 577
           +++ + ++K PG S I+VK  ++ FV  D  HPQ + ++  +  +   ++E GYVP T+ 
Sbjct: 359 MMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEF 418

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           VL D++ EEKER +  HSEKLA+A+GLI+T    TIR+ KNLR+C DCH+  K+ISK   
Sbjct: 419 VLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFE 478

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +EI++RD NRFHHFR+GVCSCGDYW
Sbjct: 479 REIVLRDANRFHHFRDGVCSCGDYW 503



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 133/266 (50%), Gaps = 9/266 (3%)

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRA 155
           L     +H+H    GFD D  + + ++++Y     + +A  VF+         W ++   
Sbjct: 46  LDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISG 105

Query: 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
               G  ++ L +Y RM    + +  D +T+  ++K   ASSC  + L+ G+++HA+V++
Sbjct: 106 CVDNGNEDQALRIYHRMR--QSRVMPDEYTFATLIK---ASSC-VTALEQGRQLHANVIK 159

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
                   + T+L+DMYA+ G +  A  +F +M V+N+  W+AM+   A++G A EA+ L
Sbjct: 160 LDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNL 219

Query: 276 FREMIMESHDLCPNSVTMVSVLQACA-ALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           F+   M+SH + P+ V+ + +L AC+ A    E  + +H      G++  +   S LV  
Sbjct: 220 FKS--MKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDA 277

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWN 360
             R G ++    V + M  +   S N
Sbjct: 278 LGRAGLVQEADKVIETMPFKASASIN 303



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 9/205 (4%)

Query: 55  LIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I      GN  QAL +          P ++T+  L+ + +   +L     +H+++    
Sbjct: 102 MISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLD 161

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              DPF+ T L+++Y+   +++DA  +F K   R I +WNA+   L   G  EE + L++
Sbjct: 162 CVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFK 221

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M     GI  DR ++  +L AC  S  G +   + + +H+    +G    +   + L+D
Sbjct: 222 SMK--SHGIEPDRVSFIGILSAC--SHAGLTSEAY-EYLHSMPNDYGIEPEIEHYSCLVD 276

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVS 255
              R G V  A  V   M  K   S
Sbjct: 277 ALGRAGLVQEADKVIETMPFKASAS 301


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/577 (38%), Positives = 345/577 (59%), Gaps = 19/577 (3%)

Query: 92  HHNSLSDALNVHSHLTDNGFDQDPF-LVTKLINVYSHFDSVDDARHVFDKTRRRTI---- 146
           +H+++    N+H+ L  N    +P  L T ++   +     D AR+      R  I    
Sbjct: 5   YHSNMKSVYNLHATLIKNAQHDNPLSLRTFILRCANSSSPPDTARYAAAVLLRFPIPGDP 64

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC-VASSCGFSLLKH 205
           + +NA+ R + L       L L+  M+ T      D FT+  +LK+  +   C       
Sbjct: 65  FPYNAVIRHVALHA-PSLALALFSHMHRTNVPF--DHFTFPLILKSSKLNPHC------- 114

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
              IH  VL+ G++  +++   LI+ Y   G +  +  +F +M  ++++SWS++I+C+A+
Sbjct: 115 ---IHTLVLKLGFHSNIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAK 171

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G+  EAL LF++M ++  D+ P+ V M+SV+ A ++L ALE G  +H +I R G++  +
Sbjct: 172 RGLPDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTV 231

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            + SAL+ MY+RCG ++    VFD M  R+VV+W +LI+   VHG G +A++ F +M+  
Sbjct: 232 SLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVES 291

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ P  I+F+ VL ACSH GLVEEG+ +F SM  E+ I P++EHY CMVDLLGRA  + E
Sbjct: 292 GLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLE 351

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A   +E +R+ P   +W +LLG+C  H  + LAE+A +R+ EL+P + G+YVLL++ Y  
Sbjct: 352 AFDFVEGMRVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGG 411

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
              W + + V+  +    + K PG S + + +  + FVS D  HPQ+E++   L ++   
Sbjct: 412 VGNWVKKEGVRNSMRESKIVKEPGLSLVHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDT 471

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           +K  GY P TK VL+D+  EEKE  +  HSEKLAVAF L+     +TIR+ KNLR+C DC
Sbjct: 472 VKLGGYTPSTKNVLHDIQEEEKEHSLGYHSEKLAVAFVLLYHRDRKTIRVIKNLRICYDC 531

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           HSF K +S F +++I++RD +RFHHFR G CSC D+W
Sbjct: 532 HSFMKHVSGFFDRDIVIRDRSRFHHFRKGSCSCRDFW 568


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/578 (38%), Positives = 341/578 (58%), Gaps = 11/578 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LLLS T   SL     +H+H+  +G    P +   LIN YS       +  VF+++ R++
Sbjct: 60  LLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKS 119

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC-VASSCGFSLLK 204
              W+++    + A   E VL +       G  +  D   +    KAC +   C      
Sbjct: 120 STTWSSVIS--SFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDV---- 173

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
            GK +H  V++ GY+  V + ++L+DMYA+ G +  A  VF +M  +NVVSWS MI  Y 
Sbjct: 174 -GKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYT 232

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           + G   EA+ LF+E ++E  D+  N  T+ SV++ C +   LE GK IHG   +   D  
Sbjct: 233 QLGEHEEAMRLFKEALLEGLDV--NDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLS 290

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
             V S+L+++Y++CG +E    VFD +  +++  WN+++ +   H +  +A  +F +M  
Sbjct: 291 GFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMEN 350

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            G+ P+ I+F+ VL ACSHAGLVEEGK  F  M+K + I P  +HYA MVDLLGRA KL+
Sbjct: 351 AGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKK-YEIEPGTQHYASMVDLLGRAGKLQ 409

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
           EA  +I+ +  EP   VWG+ +  CRIH N +LA  A+ ++FEL   ++G +V+L++ YA
Sbjct: 410 EALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYA 469

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
           AA  +++  + +++L  RG++K  G S IE   +++ F + D FH + ++++  L +L  
Sbjct: 470 AAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGE 529

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           EM+  GYV  T  VL ++ +EEK + +  HSE+LA+AFGLI+   G  IRI KNLR+C D
Sbjct: 530 EMERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGD 589

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH+  KFISK + + I+VRD NRFH F +G CSC DYW
Sbjct: 590 CHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 23/356 (6%)

Query: 21  SIAHLPPKPSSVCCCVSLNSSTTPTS-LSSRNKNE----LIQSLCKQGNLRQALDVLSIE 75
           S   LP   S V       SSTT +S +SS  +NE     IQ  C+         ++   
Sbjct: 100 SKTQLPLLSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCR---------MIGEN 150

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
             P  H +     +C          +VH  +   G+D D F+ + L+++Y+    + +AR
Sbjct: 151 LCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEAR 210

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
           +VFD+   R +  W+ +    T  G  EE + L++       G+  + FT + V++ C +
Sbjct: 211 NVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFK--EALLEGLDVNDFTLSSVIRVCGS 268

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           +    +LL+ GK+IH    +  Y+    + ++LI +Y++ G +  A  VF ++ +KN+  
Sbjct: 269 A----TLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGM 324

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+AM+   A++    EA +LF +  ME+  + PN +T + VL AC+    +E+GK     
Sbjct: 325 WNAMLIACAQHAHTKEAFDLFTK--MENAGMRPNFITFLCVLYACSHAGLVEEGKKYFAL 382

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS-WNSLISSYGVHG 370
           + +  ++      +++V +  R GKL+    V   M      S W + I+   +HG
Sbjct: 383 MKKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHG 438


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/569 (39%), Positives = 338/569 (59%), Gaps = 15/569 (2%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF-DKTRRRTIYVWNALFRALTLA 159
            +HS    +GFD    +   L+  Y     +DDA+ VF      R    WN++  A    
Sbjct: 159 QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQH 218

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
             G + L L++ M     G+  D FT   VL    A +C    L  G + H  +++ G++
Sbjct: 219 QEGSKALGLFQEM--VRRGLNVDMFTLASVL---TAFTC-LEDLSGGLQFHGQLIKTGFH 272

Query: 220 GIVHIMTTLIDMYARFGCVMY-AGFVFSQMAVKNVVSWSAMIACYARNGMAFE-ALELFR 277
              H+ + LID+Y++ G  M     VF ++   ++V W+ M++ Y++N    E ALE FR
Sbjct: 273 QNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFR 332

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI-LPVVSALVTMYA 336
           +M  +     PN  + V V+ AC+ L++  QGK IH   L+  + S  + V +AL+ MY+
Sbjct: 333 QM--QGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYS 390

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CG L+  + +FD M + + VS NS+I+ Y  HG   +++ +F+ M+   ++P+ I+F+S
Sbjct: 391 KCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFIS 450

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           VL AC+H G VEEG   F  M+++  I P  EHY+CM+DLLGRA KL EA  +I  +   
Sbjct: 451 VLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFN 510

Query: 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516
           PG   W SLLG+CR H N+ELA +A+ ++ +LEP+NA  YV+L+++YA+A  W+EV  V+
Sbjct: 511 PGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVR 570

Query: 517 RLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTK 576
           + +  RG++K PG S IEVK++++ FV+ D  HP  ++++  L  +S +MK  GYVP  +
Sbjct: 571 KFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVR 630

Query: 577 VVLYDLDAE---EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
             L   D     EKE  +  HSEKLAVAFGLI+T  GE + + KNLR+C DCH+  KFIS
Sbjct: 631 WALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFIS 690

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             A +EI VRD +RFH F+ G CSCGDYW
Sbjct: 691 AIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 141/299 (47%), Gaps = 13/299 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF-DSVDDAR 135
           N    T   +L + T    LS  L  H  L   GF Q+  + + LI++YS     + D R
Sbjct: 237 NVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCR 296

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRG-EEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
            VF++     + +WN +    +      E+ LE +R+M   G G R +  ++  V+ AC 
Sbjct: 297 KVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQ--GIGYRPNDCSFVCVISAC- 353

Query: 195 ASSCGFSLLKHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                 S    GK+IH+  L+    +  + +   LI MY++ G +  A  +F +MA  N 
Sbjct: 354 ---SNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNT 410

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VS ++MIA YA++G+  E+L LF+ M+     + P S+T +SVL ACA    +E+G    
Sbjct: 411 VSLNSMIAGYAQHGIEMESLHLFQWML--ERQIAPTSITFISVLSACAHTGRVEEGWNYF 468

Query: 314 GYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
             +  +  ++      S ++ +  R GKL   + +   M      + W SL+ +   HG
Sbjct: 469 NMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHG 527



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 139/317 (43%), Gaps = 49/317 (15%)

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
           + ++LK C+A       L  GK +H+  ++       +     I +Y++ G + +A   F
Sbjct: 11  FRHLLKTCIAER----DLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAF 66

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMI------------------------- 280
             ++  NV S++A+IA YA+      A +LF ++                          
Sbjct: 67  QDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALG 126

Query: 281 ----MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
               M    L  +  T+ +V+ AC     L     +H   +  G DS + V +AL+T Y 
Sbjct: 127 LFSGMREMGLDMDXFTLSAVITACCDDVGLI--GQLHSVAVSSGFDSYVSVNNALLTYYG 184

Query: 337 RCGKLELGQCVFDHMDK-RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           + G L+  + VF  M   RD VSWNS+I +YG H  G KA+ +F+EM+  G++    +  
Sbjct: 185 KNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLA 244

Query: 396 SVLGACS-----HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR-ANKLEEAAKI 449
           SVL A +       GL   G+++     +   +         ++DL  +    + +  K+
Sbjct: 245 SVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSG------LIDLYSKCGGGMSDCRKV 298

Query: 450 IEDLRIEPGPKVWGSLL 466
            E++  EP   +W +++
Sbjct: 299 FEEI-TEPDLVLWNTMV 314


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/575 (37%), Positives = 345/575 (60%), Gaps = 14/575 (2%)

Query: 90  CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR-RTIYV 148
           C+    L+    +H  +  NG++    + T L+  YS   SVD+A  +F        +  
Sbjct: 316 CSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVT 375

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           W A+          ++ ++L+ +M  +  G+R + FTY+ VL    +S     LL    +
Sbjct: 376 WTAMIGGFVQNNNNKKAVDLFCQM--SREGVRPNHFTYSTVLAGKPSS-----LLS---Q 425

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           +HA +++  Y  +  + T L+D Y + G V+ +  VF  +  K++V+WSAM+   A+   
Sbjct: 426 LHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRD 485

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA-LEQGKMIHGYILRRGLDSILPV 327
           + +A+E+F +++ E   + PN  T  SV+ AC++ AA +E GK IH   ++ G  + L V
Sbjct: 486 SEKAMEVFIQLVKEG--VKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCV 543

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
            SAL+TMY++ G +E  + VF   ++RD+VSWNS+I+ YG HG   KA+++F+ M   G+
Sbjct: 544 SSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGL 603

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
               ++F+ VL AC+HAGLVEEG+  F  M K++ I    EHY+CMVDL  RA   ++A 
Sbjct: 604 PLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAM 663

Query: 448 KIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507
            II  +     P +W +LL +CR+H N+EL + A+++L  L+P +A  YVLL++++A A 
Sbjct: 664 DIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAG 723

Query: 508 MWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK 567
            W+E   V++L++ R ++K  G S IE+K +++SF++ D  HP  + ++A L  LS ++K
Sbjct: 724 NWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLK 783

Query: 568 EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHS 627
           + GY P T  V +D++ E KE I+  HSE+LA+A+GLI    G  I+I KNLR+C DCH+
Sbjct: 784 DMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHN 843

Query: 628 FTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             + IS    + ++VRD NRFHHF+ GVCSCG YW
Sbjct: 844 VIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 162/345 (46%), Gaps = 31/345 (8%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  +FD+T  + I  +N L    +      E L L++ ++ +G G+  D  T +  LK C
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGV--DGLTLSCALKVC 114

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                 F  +  G+++H   L+ G+   V + T+L+DMY +         +F +M +KNV
Sbjct: 115 ---GVLFDQVV-GRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNV 170

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+++++ YARNG+  E + L  +M ME   + PN  T  +VL A A  + +E G  +H
Sbjct: 171 VSWTSLLSGYARNGLNDEVIHLINQMQMEG--VNPNGFTFATVLGALADESIIEGGVQVH 228

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             I++ G +    V +AL+ MY +   +   + VFD M  RD V+WN +I  Y   G+  
Sbjct: 229 AMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYL 288

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACS-----------HAGLVEEGKMLFESMRKEHM 422
           +  Q+F  M   GV  S   F + L  CS           H G+V+ G    + +R   M
Sbjct: 289 EGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALM 348

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           +  S            + + ++EA K+            W +++G
Sbjct: 349 VTYS------------KCSSVDEAFKLFSMADAAHNVVTWTAMIG 381



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 163/339 (48%), Gaps = 14/339 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           NP   T+  +L +    + +   + VH+ +  NGF+   F+   LI +Y   + V DA  
Sbjct: 202 NPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEA 261

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD    R    WN +       G   E  +++ RM     G++  R  +   LK C   
Sbjct: 262 VFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMR--LAGVKLSRTVFCTALKLCSQQ 319

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM-AVKNVVS 255
                 L   K++H  V+++GY     I T L+  Y++   V  A  +FS   A  NVV+
Sbjct: 320 ----RELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVT 375

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+AMI  + +N    +A++LF +M  E   + PN  T  +VL A    + L Q   +H  
Sbjct: 376 WTAMIGGFVQNNNNKKAVDLFCQMSREG--VRPNHFTYSTVL-AGKPSSLLSQ---LHAQ 429

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           I++   + +  V +AL+  Y + G +     VF  +  +D+V+W+++++         KA
Sbjct: 430 IIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKA 489

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGAC-SHAGLVEEGKML 413
           +++F +++  GV P+  +F SV+ AC S A  VE GK +
Sbjct: 490 MEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQI 528



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 144/300 (48%), Gaps = 9/300 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH     +GF +D  + T L+++Y   +  +D R +FD+   + +  W +L       G 
Sbjct: 126 VHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGL 185

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            +EV+ L  +M     G+  + FT+  VL A        S+++ G ++HA ++++G+   
Sbjct: 186 NDEVIHLINQMQ--MEGVNPNGFTFATVLGALADE----SIIEGGVQVHAMIVKNGFEFT 239

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
             +   LI MY +   V  A  VF  M V++ V+W+ MI  YA  G   E  ++F  M +
Sbjct: 240 TFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRL 299

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
               L  +     + L+ C+    L   K +H  +++ G +    + +AL+  Y++C  +
Sbjct: 300 AGVKL--SRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSV 357

Query: 342 ELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +    +F   D   +VV+W ++I  +  +    KA+ +F +M   GV P+  ++ +VL  
Sbjct: 358 DEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAG 417



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 93/171 (54%), Gaps = 2/171 (1%)

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
           YA  +F +  +K++  ++ ++  ++RN    EAL LF+++   S  L  + +T+   L+ 
Sbjct: 56  YAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDL--HSSGLGVDGLTLSCALKV 113

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           C  L     G+ +H   L+ G    + V ++LV MY +    E G+ +FD M  ++VVSW
Sbjct: 114 CGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSW 173

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
            SL+S Y  +G   + I +  +M   GV+P+  +F +VLGA +   ++E G
Sbjct: 174 TSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG 224


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/597 (37%), Positives = 349/597 (58%), Gaps = 17/597 (2%)

Query: 66  RQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY 125
           R  +DV ++        +ELL L C    SL    + H      G   D      LIN+Y
Sbjct: 51  RDLIDVFTL--------HELLQL-CAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLY 101

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
           +     D AR VFD    R+I  WN +    T      E L+L+ RM+  GT +    FT
Sbjct: 102 TKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQM--TEFT 159

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
            +  L AC A    +++++  K++H   ++   +    + T  +D+YA+   +  A +VF
Sbjct: 160 LSSTLCACAAK---YAIIE-CKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVF 215

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
             M  K  V+WS++ A + +NG+  E L LF+    E   L     T+ S+L  CA+LA 
Sbjct: 216 ENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQL--TEFTVSSILSTCASLAL 273

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           + +G  +H  I++ G    L V ++LV +YA+CG++E    VF  M++++VV WN++I+S
Sbjct: 274 IIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIAS 333

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           +  H +  +A+ +F++M   G+ P+ ++++S+L ACSH GLVEEG+  F  +  +    P
Sbjct: 334 FSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEP 393

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
           +V HY+CMVD+LGR+ K +EA K+++ +  EP   +WGSLLGS RIH N+ LA  A+++L
Sbjct: 394 NVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQL 453

Query: 486 FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSV 545
           F LEP N GN+VLL++VYAA+  W+ V   ++ L   G +K  GRS IE K K++ FV+ 
Sbjct: 454 FRLEPENGGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAG 513

Query: 546 DEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLI 605
           +  HP    ++  L  +  EM++  +   T+  L+D+ A++KE ++  HSEKLA AFGLI
Sbjct: 514 EREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLI 573

Query: 606 NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +      I I KNLR+C DCHSF K +S    ++++VRD+NRFHHF++G CSCGD+W
Sbjct: 574 SLPPNIPITIYKNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/599 (37%), Positives = 349/599 (58%), Gaps = 18/599 (3%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS-- 126
           LD+L     P Q+T   +L +CT   S      +HS     G + D  +   L+++Y+  
Sbjct: 244 LDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKS 303

Query: 127 -HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG-RGEEVLELYRRMNGTGTGIRSDRF 184
            +  S+ +AR VF++  +  +  W AL       G +  +V+ L+ +M     GIR +  
Sbjct: 304 HNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKM--LNEGIRPNHI 361

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           TY+ +LKAC            G++IH   ++     +  +   L+ MYA  G +  A   
Sbjct: 362 TYSSMLKACA----NLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHA 417

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F Q+  KN+VS+S  +    R+         +++  +E  +L  ++ T  S++ A A++ 
Sbjct: 418 FDQLYEKNMVSFSGNLDGDGRSNT-------YQDYQIERMELGISTFTFGSLISAAASVG 470

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
            L +G+ +H   L+ G  S   + ++LV+MY+RCG L     VFD M+  +V+SW S+IS
Sbjct: 471 MLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMIS 530

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
               HGY  +A+++F +MI  GV P+ +++++VL ACSHAGLV+EGK  F  M+K H + 
Sbjct: 531 GLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLI 590

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484
           P +EHYACMVDLLGR+  +E+A   I ++  +    VW +LLG+C+ H N+++ E A+  
Sbjct: 591 PRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANH 650

Query: 485 LFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS 544
           + +LEP +   YVLL+++YA A +WD+V R++ L+  + L K  G S + V   ++ F +
Sbjct: 651 VIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRA 710

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604
            D  HPQ E+++  L  L  E+K  GYVP T VVL+D+  E KE  +L HSEK+AVAFGL
Sbjct: 711 GDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGL 770

Query: 605 IN-TSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I+ TS  + IRI KNLR+C DCHS  K++SK   +EI++RD NRFH  ++G CSCG+YW
Sbjct: 771 ISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 183/382 (47%), Gaps = 15/382 (3%)

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWNALF 153
           L  AL  H   T +  + D  +   L+ +YS   +V  AR VFD      R +  W A+ 
Sbjct: 65  LGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMA 124

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
             L+  G   E L L+        G+  + FT     +AC AS   F L   G  +   V
Sbjct: 125 SCLSRNGAEAEALRLFGET--LEEGLLPNAFTLCAATQACFASEL-FHLA--GGAVLGLV 179

Query: 214 LRHGYNGI-VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
            + G+ G  V +   LIDM+A+ G ++    VF  +  + VV W+ +I  YA++G + EA
Sbjct: 180 FKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEA 239

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
           +ELF +M+   +   P+  T+ S+L AC  L +   G+ +H   LR GL+S   V   LV
Sbjct: 240 VELFLDML--ENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLV 297

Query: 333 TMYARC---GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI-FKEMIYHGVS 388
            MYA+      L   + VF+ M K +V++W +L+S Y   G     + I F +M+  G+ 
Sbjct: 298 DMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIR 357

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
           P+ I++ S+L AC++ G  + G+ +     K ++   +V   A +V +   +  +EEA  
Sbjct: 358 PNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNA-LVSMYAESGSIEEARH 416

Query: 449 IIEDLRIEPGPKVWGSLLGSCR 470
             + L  +      G+L G  R
Sbjct: 417 AFDQLYEKNMVSFSGNLDGDGR 438



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 15/247 (6%)

Query: 62  QGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKL 121
           + N  Q   +  +E   +  T+  L+ +      L+    +H+     GF  D  +   L
Sbjct: 438 RSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSL 497

Query: 122 INVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
           +++YS    + DA  VFD+     +  W ++   L   G     LEL+  M     G++ 
Sbjct: 498 VSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDM--IAAGVKP 555

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM---TTLIDMYARFGCV 238
           +  TY  VL AC  S  G  L+K GKE    + +H  +G++  M     ++D+  R G V
Sbjct: 556 NDVTYIAVLSAC--SHAG--LVKEGKEHFRMMQKH--HGLIPRMEHYACMVDLLGRSGLV 609

Query: 239 MYAGFVFSQMAVK-NVVSWSAMI-ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
             A    ++M  + + + W  ++ AC   N M    +     + +E  D  P    ++S 
Sbjct: 610 EDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQD--PAPYVLLSN 667

Query: 297 LQACAAL 303
           L A A L
Sbjct: 668 LYAEAGL 674


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/616 (35%), Positives = 347/616 (56%), Gaps = 39/616 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P++ T   ++++ +     +     H  +   GF  + F+ + L+ +Y+    + DA+ V
Sbjct: 138 PSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRV 197

Query: 138 FDK------------------------TRR-------RTIYVWNALFRALTLAGRGEEVL 166
           FD+                         RR       R    W  +    T  G   + L
Sbjct: 198 FDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQAL 257

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
             +RRM   G  I  D++T+  +L AC A     S L+ GK+IHA ++R  Y+  V + +
Sbjct: 258 NFFRRMRFQGIAI--DQYTFGSILTACGA----LSALEQGKQIHAYIIRTHYDDNVFVGS 311

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+DMY++   +  A   F +M+ KN++SW+A+I  Y +NG + EA+ +F EM  +  D 
Sbjct: 312 ALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID- 370

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+  T+ SV+ +CA LA+LE+G   H   L  GL   + V +ALVT+Y +CG +E    
Sbjct: 371 -PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHR 429

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +FD M   D VSW +L++ Y   G   + I +F++M+   V P  ++F+ VL ACS AG 
Sbjct: 430 LFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGF 489

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           VE+G   F SM+K+H I P  +HY CM+DL  R+ +L+EA + I+ + + P    WG+LL
Sbjct: 490 VEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLL 549

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +CR+  ++E+ + A++ L E++P N  +YVLL  ++A    W++V +++R +  R ++K
Sbjct: 550 SACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKK 609

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S I+ K K++ F + D+ HP  + ++  L  L+++M E+GY P    VL+D+   +
Sbjct: 610 EPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTD 669

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           K  +V  HSEKLA+AFGL+       IRI KNLR+C DCH+ TK ISK   ++ILVRD  
Sbjct: 670 KVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAV 729

Query: 647 RFHHFRNGVCSCGDYW 662
           RFH F NGVCSCGD+W
Sbjct: 730 RFHKFSNGVCSCGDFW 745



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 180/378 (47%), Gaps = 42/378 (11%)

Query: 111 FDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FD  P    F    L++  +H   +DD   +F    +R    +NA+    +  G     +
Sbjct: 64  FDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAV 123

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            LY  +   G+ +R  R T + ++ A  AS+ G   L  G++ H  +LR G+     + +
Sbjct: 124 RLYHTLLRAGSSVRPSRITMSAMVMA--ASALGDRAL--GRQFHCQILRLGFGVNAFVGS 179

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVV-------------------------------S 255
            L+ MYA+ G +  A  VF +M  KNVV                               +
Sbjct: 180 PLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCIT 239

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+ M+  + +NG+  +AL  FR M  +   +  +  T  S+L AC AL+ALEQGK IH Y
Sbjct: 240 WTTMVTGFTQNGLESQALNFFRRMRFQG--IAIDQYTFGSILTACGALSALEQGKQIHAY 297

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           I+R   D  + V SALV MY++C  ++  +  F  M  ++++SW +LI  YG +G   +A
Sbjct: 298 IIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEA 357

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           +++F EM   G+ P   +  SV+ +C++   +EEG   F  +     +   +     +V 
Sbjct: 358 VRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVT 416

Query: 436 LLGRANKLEEAAKIIEDL 453
           L G+   +E+A ++ +++
Sbjct: 417 LYGKCGSIEDAHRLFDEM 434



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 110/267 (41%), Gaps = 16/267 (5%)

Query: 57  QSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPF 116
           Q+ C +  +R   ++     +P   T   ++ SC +  SL +    H     +G      
Sbjct: 350 QNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYIT 409

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           +   L+ +Y    S++DA  +FD+        W AL       GR +E ++L+ +M    
Sbjct: 410 VSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKM--LA 467

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
             ++ D  T+  VL AC  S  GF + K     H+    HG   I    T +ID+Y+R G
Sbjct: 468 KDVKPDGVTFIGVLSAC--SRAGF-VEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSG 524

Query: 237 CVMYAGFVFSQMAV-KNVVSWSAMI-ACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            +  A     QM +  + + W  ++ AC  R  M  E  +   E ++E     P S  ++
Sbjct: 525 RLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDM--EIGQWAAENLLEIDPQNPASYVLL 582

Query: 295 SVLQACAALAALEQGKMIHGYILRRGL 321
             + A        +G       LRRG+
Sbjct: 583 CSMHA-------TKGNWNQVAQLRRGM 602


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/536 (39%), Positives = 338/536 (63%), Gaps = 15/536 (2%)

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM--NGTGTGIRSDRFTYTYV 189
           +D+RH+FD+   R++  W ++        R  + + +++ +    +G+    D      V
Sbjct: 30  NDSRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSV 89

Query: 190 LKACVASS---CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
           L  CV S+    G+  +  G  +H  V++ G+   V +  TL+D YA+FG  M    VF 
Sbjct: 90  LLGCVVSAFSKLGWRGVTEG--VHGLVIKRGFERCVGVGNTLMDAYAKFG-EMGVAKVFD 146

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
            M   +   W+++IA YA+NG++ EA  +F +M+ +S +   N+V M   L       AL
Sbjct: 147 GMNESDHYFWNSVIAEYAQNGLSAEAFSVFGDMV-KSGNFRYNAVIMDXGLSG-----AL 200

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
           + GK IH  +++  L+  + V +++V +Y +C ++E+ +  FD M  ++V SW ++++ Y
Sbjct: 201 QLGKCIHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGY 260

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
           G+HG   +A++IF +MI  GV P+ I+FVSVL ACSHAG+++EG   F  M+ E ++ P 
Sbjct: 261 GMHGRAKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPG 320

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF 486
           +EHY CMVDLLGRA  L     +I+++  +P   +WGSLLG+CRIH NVEL E ++++LF
Sbjct: 321 IEHYLCMVDLLGRAGYLX-CYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLF 379

Query: 487 ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD 546
           EL+ +N G YVLL+++YA A  WDEV+R++ L+++RGL K PG S +E+K +++  +  D
Sbjct: 380 ELDXSNCGYYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGD 439

Query: 547 EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLIN 606
           + HPQ E+++  L   + +++E GY+P   +VL+D+D EEK  ++  HSEKLAVAFG++N
Sbjct: 440 KEHPQHEKIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGIMN 499

Query: 607 TSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +  G  I I KNLR+C DC+   K I K  N+EI+VRD  RFHHF+ G CSCGDYW
Sbjct: 500 SVPGSIIHIIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 26/221 (11%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N +I    + G   +A  V           Y  +++      +L     +H  +     +
Sbjct: 157 NSVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLSGALQLGKCIHHQVIKMDLE 216

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
              F+ T ++++Y   + V+ AR  FD  + + +  W A+     + GR +E +E++ +M
Sbjct: 217 DSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRAKEAMEIFYKM 276

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN----------GIV 222
               +G++ +  T+  VL AC  +     +LK G         H +N          GI 
Sbjct: 277 --IRSGVKPNYITFVSVLAACSHA----GMLKEGX--------HWFNRMKCEFIVEPGIE 322

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI-AC 262
           H +  ++D+  R G +   G +    A  + + W +++ AC
Sbjct: 323 HYL-CMVDLLGRAGYLXCYGLIKEMNAKPDFIIWGSLLGAC 362


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/629 (35%), Positives = 352/629 (55%), Gaps = 39/629 (6%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           LR+   V      P++ T   ++++ +     +    VH  +   GF    F  + L+++
Sbjct: 134 LREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDM 193

Query: 125 YSHFDSVDDARHVFDKTRRRTIYV-------------------------------WNALF 153
           Y+    + DA+ VFD+   + + +                               W  + 
Sbjct: 194 YAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMV 253

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
             LT  G   E L+++RRM   G GI  D++T+  +L AC A     +  + GK+IHA  
Sbjct: 254 TGLTQNGLQSEALDVFRRMRAEGVGI--DQYTFGSILTACGA----LAASEEGKQIHAYT 307

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           +R  Y+G + + + L+DMY++   +  A  VF +M  KN++SW+AMI  Y +NG   EA+
Sbjct: 308 IRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAV 367

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
            +F EM  ++  + PN  T+ SV+ +CA LA+LE+G   H   L  GL   + V SALVT
Sbjct: 368 RVFSEM--QTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVT 425

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           +Y +CG +E    +FD M   D VS+ +L+S Y   G   + I +F++M+  GV P+ ++
Sbjct: 426 LYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVT 485

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           F+ VL ACS +GLVE+G   F SM+++H I    +HY CM+DL  R+ +L+EA + I  +
Sbjct: 486 FIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQM 545

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
              P    W +LL +CR+  ++E+ + A++ L + +P N  +YVLL  ++A+   W EV 
Sbjct: 546 PRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVA 605

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
            ++R +  R ++K PG S I+ K +++ F + D+ HP    ++  L  L+++M E+GY P
Sbjct: 606 LLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKP 665

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
               VL+D+   EK  ++  HSEKLA+AFGLI   +   IR+ KNLR+C DCH+ TKFIS
Sbjct: 666 DVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRVCVDCHNATKFIS 725

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K   ++ILVRD  RFH F NG+CSCGD+W
Sbjct: 726 KITGRDILVRDAVRFHKFSNGICSCGDFW 754



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 202/427 (47%), Gaps = 62/427 (14%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           VL   P+P   TY L  L   +  + S  L +   L D   D + F    L++  +H   
Sbjct: 35  VLRTLPHPPP-TYVLNHLLTAY--ARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARL 91

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAG-------------RGEEVLELYRRMNGTGT 177
           + D   +F    +R    +NAL    + AG             R E V++        G 
Sbjct: 92  LPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVD--------GA 143

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
            +R  R T + ++ A  AS+ G   L  G+++H  ++R G+       + L+DMYA+ G 
Sbjct: 144 RVRPSRITMSGMVMA--ASALGDRAL--GRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGL 199

Query: 238 VMYAGFVFSQMAVKNVV-------------------------------SWSAMIACYARN 266
           +  A  VF +M VKNVV                               +W+ M+    +N
Sbjct: 200 IGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQN 259

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           G+  EAL++FR M  E   +  +  T  S+L AC ALAA E+GK IH Y +R   D  + 
Sbjct: 260 GLQSEALDVFRRMRAEGVGI--DQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIF 317

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           V SALV MY++C  + L + VF  M  ++++SW ++I  YG +G G +A+++F EM   G
Sbjct: 318 VGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDG 377

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           + P+  +  SV+ +C++   +EEG   F  M     +RP +   + +V L G+   +E+A
Sbjct: 378 IKPNDFTLGSVISSCANLASLEEGAQ-FHCMALVSGLRPYITVSSALVTLYGKCGSIEDA 436

Query: 447 AKIIEDL 453
            ++ +++
Sbjct: 437 HRLFDEM 443



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 156/322 (48%), Gaps = 14/322 (4%)

Query: 55  LIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           ++  L + G   +ALDV     +      Q+T+  +L +C    +  +   +H++     
Sbjct: 252 MVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTL 311

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           +D + F+ + L+++YS   S+  A  VF +   + I  W A+       G GEE + ++ 
Sbjct: 312 YDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFS 371

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M     GI+ + FT   V+ +C       + L+ G + H   L  G    + + + L+ 
Sbjct: 372 EMQ--TDGIKPNDFTLGSVISSCA----NLASLEEGAQFHCMALVSGLRPYITVSSALVT 425

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           +Y + G +  A  +F +M   + VS++A+++ YA+ G A E ++LF +M+++   + PN 
Sbjct: 426 LYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKG--VKPNG 483

Query: 291 VTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
           VT + VL AC+    +E+G    H      G+  +    + ++ +Y+R G+L+  +    
Sbjct: 484 VTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIR 543

Query: 350 HMDK-RDVVSWNSLISSYGVHG 370
            M +  D + W +L+S+  + G
Sbjct: 544 QMPRCPDAIGWATLLSACRLRG 565


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/627 (34%), Positives = 372/627 (59%), Gaps = 20/627 (3%)

Query: 42  TTPTSLSSRNKNELIQSLCKQGNLRQALD---VLSIEPNP---TQHTYELLLLSCTHHNS 95
           T+P+ L S+     I+ L      R+A++   +L +E +       TY+ L+ +C    S
Sbjct: 79  TSPSGLCSQ-----IEKLVVCNRHREAMELFEILELEHDGYGVGASTYDALVSACVGLRS 133

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRA 155
           +     V +++ ++GF+ D +++ +++ ++     + DAR +FD+   + +  W  +   
Sbjct: 134 IRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGG 193

Query: 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
           L   G   E   L+  M       RS  F         + +S G  L++ GK+IH+  L+
Sbjct: 194 LVDTGNFSEAFRLFLCMWKEFNDGRSRTFA------TMIRASAGLGLVQVGKQIHSCALK 247

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
            G      +   LIDMY++ G +  A  VF QM  K  V W+++IA YA +G + EAL L
Sbjct: 248 RGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSL 307

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           + EM         +  T+  V++ CA LA+LE  K  H  ++R G  + +   +ALV  Y
Sbjct: 308 YFEM--RDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANTALVDFY 365

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ++ G++E  + VF+ M  ++V+SWN+LI+ YG HG G +A+++F++M+  GV+P+ ++F+
Sbjct: 366 SKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFL 425

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
           +VL ACS++GL + G  +F SM+++H ++P   HYACM++LLGR + L+EA  +I     
Sbjct: 426 AVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPF 485

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
           +P   +W +LL +CR+H N+EL + A+++L+ +EP    NY++L ++Y ++    E   +
Sbjct: 486 KPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGI 545

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT 575
            + L+ +GL+ +P  S +EVK++ Y+F+  D+ H Q ++++  + NL  E+ + GY  + 
Sbjct: 546 LQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIYQKVDNLMVEICKHGYAEEN 605

Query: 576 KVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKF 635
           + +L D+D EE++RI+  HSEKLA+AFGLINT     ++IT+  R+C DCHS  K I+  
Sbjct: 606 ETLLPDVD-EEEQRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKLIAMV 664

Query: 636 ANKEILVRDVNRFHHFRNGVCSCGDYW 662
             +EI+VRD +RFHHFRNG CSCGDYW
Sbjct: 665 TGREIVVRDASRFHHFRNGSCSCGDYW 691


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/616 (36%), Positives = 357/616 (57%), Gaps = 15/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+    K+G  R+A+++      +   PT+ T+  +L +    + +     VH  +  
Sbjct: 268 NALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVK 327

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
             F  + F+   L++ YS  D V +A  +F +        +N L       GR +E LEL
Sbjct: 328 CNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLEL 387

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL-LKHGKEIHASVLRHGYNGIVHIMTT 227
           ++ +  TG     DR  + +   A + S    SL L  G++IH+  +       + +  +
Sbjct: 388 FKELQFTGF----DRRNFPF---ATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNS 440

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+DMYA+ G    A  +FS +A+++ V W+AMI+ Y + G+  + L+LF EM  +   + 
Sbjct: 441 LVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEM--QRAKIG 498

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
            ++ T  S+++ACA+LA+L  GK +H +I+  G  S +   SALV MYA+CG ++    +
Sbjct: 499 ADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQM 558

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F  M  R+ VSWN+LIS+Y  +G G   +++F+EM+  G+ P  +S +S+L ACSH GLV
Sbjct: 559 FQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLV 618

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           EEG   F+SM + + + P  EHYA  +D+L R  + +EA K++  +  EP   +W S+L 
Sbjct: 619 EEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLN 678

Query: 468 SCRIHCNVELAERASKRLFELEP-TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           SC IH N ELA++A+ +LF ++   +A  YV ++++YAAA  WD V +VK+ +  RG++K
Sbjct: 679 SCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKK 738

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
           VP  S +E+K K + F + D+ HPQ  ++   L  L  +M +KGY P +   L+++D E 
Sbjct: 739 VPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEV 798

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           K   +  HSE++A+AF LI+T +G  I + KNLR C DCH+  K ISK   +EI VRD +
Sbjct: 799 KVESLKYHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSS 858

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHFR+G C+C DYW
Sbjct: 859 RFHHFRDGFCTCRDYW 874



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/451 (22%), Positives = 195/451 (43%), Gaps = 45/451 (9%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N +I    K GNL +A  +       T  T+ +L+     +N   +A  +   +  +G D
Sbjct: 136 NTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGID 195

Query: 113 QDPFLVTKLINVYSHFDSVDDARHV----------------------------------- 137
            D   +  L++ ++ FDSV++ R V                                   
Sbjct: 196 PDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQL 255

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+    R    +NAL    +  G   E + L+ +M     G R   FT+  +L A +   
Sbjct: 256 FNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQ--EVGYRPTEFTFAAILTAGIQ-- 311

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                ++ G+++H  V++  +   V +   L+D Y++   V+ A  +F +M   + +S++
Sbjct: 312 --LDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYN 369

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            ++ CYA NG   E+LELF+E+     D    +    ++L   A    L+ G+ IH   +
Sbjct: 370 VLVTCYAWNGRVKESLELFKELQFTGFD--RRNFPFATLLSIAAISLNLDIGRQIHSQTI 427

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
                S + V ++LV MYA+CG+      +F  +  +  V W ++ISSY   G     ++
Sbjct: 428 VTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLK 487

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F EM    +     ++ S++ AC+    +  GK L   +     I  +V   + +VD+ 
Sbjct: 488 LFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYI-SNVFSGSALVDMY 546

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            +   +++A ++ +++ +      W +L+ +
Sbjct: 547 AKCGSIKDALQMFQEMPVRNSVS-WNALISA 576



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 178/396 (44%), Gaps = 22/396 (5%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP----FLVTKLINVYSHFDSVD 132
           NP  +    L+ S      L+ A  +        FD+ P    F    +I  Y    ++ 
Sbjct: 98  NPNTYRSNFLVKSFLQRGDLNGARKL--------FDEMPHKNIFSTNTMIMGYIKSGNLS 149

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           +AR +FD   +RT   W  L        +  E   L+  M   G  I  D  +   +L  
Sbjct: 150 EARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHG--IDPDHVSLATLLSG 207

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
                  F  +   +++H+ V++ GY+  + +  +L+D Y +   +  A  +F+ +  ++
Sbjct: 208 FTE----FDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERD 263

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
            V+++A++  Y++ G   EA+ LF +  M+     P   T  ++L A   L  +E G+ +
Sbjct: 264 SVTFNALLTGYSKEGFNREAINLFFK--MQEVGYRPTEFTFAAILTAGIQLDDIEFGQQV 321

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           HG++++      + V +AL+  Y++  ++     +F  M + D +S+N L++ Y  +G  
Sbjct: 322 HGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRV 381

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +++++FKE+ + G       F ++L   + +  ++ G+ +         I   +   + 
Sbjct: 382 KESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNS- 440

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           +VD+  +  +  EA +I  DL I+     W +++ S
Sbjct: 441 LVDMYAKCGEFGEANRIFSDLAIQSSVP-WTAMISS 475



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 132/276 (47%), Gaps = 34/276 (12%)

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV--------------- 253
           + AS+++ G+N   +    L+  + + G +  A  +F +M  KN+               
Sbjct: 88  VDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGN 147

Query: 254 ----------------VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
                           V+W+ +I  YA+N    EA  LF E  M  H + P+ V++ ++L
Sbjct: 148 LSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIE--MGRHGIDPDHVSLATLL 205

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
                  ++ + + +H ++++ G DS L V ++L+  Y +   L L   +F+ + +RD V
Sbjct: 206 SGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSV 265

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           ++N+L++ Y   G+  +AI +F +M   G  P+  +F ++L A      +E G+ +   +
Sbjct: 266 TFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFV 325

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            K + +  +V     ++D   + +++ EA+K+  ++
Sbjct: 326 VKCNFVW-NVFVANALLDFYSKHDRVVEASKLFYEM 360


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/633 (35%), Positives = 355/633 (56%), Gaps = 36/633 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N ++    + G + +A  +        + ++  LL +   +  + DA      L D+  D
Sbjct: 157 NAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDA----RRLFDSKMD 212

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            +      L+  Y     +DDAR +FD+   R    WN +       G   E   L+  +
Sbjct: 213 WEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL 272

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSC------GFSLLKHGKEIHASVLRHGYNGIVHI-- 224
                 IR D F +T ++   V +         F  +    E+  + +  GY     I  
Sbjct: 273 P-----IR-DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEK 326

Query: 225 ---------------MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
                            T++  YA+ G +  A  +F +M  ++ +SW+AMI+ YA++G +
Sbjct: 327 ARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQS 386

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EAL LF +M  +   L  N   +   L +CA +AALE GK +HG +++ G  +     +
Sbjct: 387 EEALHLFIKMKRDGGIL--NRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGN 444

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           AL+ MY +CG +E    VF+ + ++D+VSWN++I+ Y  HG+G +A+ +F+ M    + P
Sbjct: 445 ALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKP 503

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
             ++ V VL ACSH G V++G   F SM + + I  + +HY CM+DLLGRA +L+EA  +
Sbjct: 504 DDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNL 563

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
           ++ +   P    WG+LLG+ RIH + EL E+A++++FE+EP N+G YVLL+++YAA+  W
Sbjct: 564 MKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRW 623

Query: 510 DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569
            EV+ ++  +  +G++KVPG S +E++ K + F   D  HP+ E+++A L  L  E+K+ 
Sbjct: 624 REVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKD 683

Query: 570 GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
           G+V  TK+VL+D++ EEKE ++  HSEKLAVAFG+++   G  IR+ KNLR+CEDCH+  
Sbjct: 684 GFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAI 743

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K ISK   ++I+VRD NRFHHF  G CSCGDYW
Sbjct: 744 KHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 155/397 (39%), Gaps = 54/397 (13%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           +I+ Y   +  D AR VF+K   R +  WN +       G       L+ +M        
Sbjct: 97  MISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP------E 150

Query: 181 SDRFTYTYVLKACVASSCG------FSLLKHGKEIHASVLRHGY--NGIVHIMTTLIDM- 231
            D  ++  +L     +         F  +    EI  + L   Y  NG +     L D  
Sbjct: 151 KDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSK 210

Query: 232 ----YARFGCVMYAGFV-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
                  + C+M  G+V           F +M V++ +SW+ MI  YA+NG+  EA  LF
Sbjct: 211 MDWEIVSWNCLM-GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLF 269

Query: 277 REMIMES--------HDLCPNSV--TMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
            E+ +               N +      + +       +    MI GY+  + ++    
Sbjct: 270 EELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARE 329

Query: 327 VV-----------SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           +            + +VT YA+CG ++  + +FD M +RD +SW ++IS Y   G   +A
Sbjct: 330 LFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEA 389

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           + +F +M   G   +  +    L +C+    +E GK L   + K       +   A +  
Sbjct: 390 LHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLA- 448

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           + G+   +EEA  + ED+  E     W +++     H
Sbjct: 449 MYGKCGSIEEAFDVFEDI-TEKDIVSWNTMIAGYARH 484



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 124/271 (45%), Gaps = 25/271 (9%)

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
           S +   ++V W+  I+ Y R G    AL +F  M   S      +VT  +++    +   
Sbjct: 53  STIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRS------TVTYNAMISGYLSNNK 106

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
            +  + +   +  R L S     + +++ Y + G L   + +F+ M ++DVVSWN+++S 
Sbjct: 107 FDCARKVFEKMPDRDLISW----NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSG 162

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           +  +G+  +A +IF +M+      + IS+  +L A    G +E+ + LF+S     ++  
Sbjct: 163 FAQNGFVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIV-- 216

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
               + C++    R  +L++A  + + + +      W  ++       N  L+E  ++RL
Sbjct: 217 ---SWNCLMGGYVRKKRLDDARSLFDRMPVRDKIS-WNIMITG--YAQNGLLSE--ARRL 268

Query: 486 FELEPT-NAGNYVLLADVYAAADMWDEVKRV 515
           FE  P  +   +  +   +    M DE  R+
Sbjct: 269 FEELPIRDVFAWTAMVSGFVQNGMLDEATRI 299



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 125/281 (44%), Gaps = 28/281 (9%)

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           +F C   A  VF +M  ++++SW+ M++ Y +NG    A  LF +M  +      + V+ 
Sbjct: 106 KFDC---ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEK------DVVSW 156

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
            ++L   A    +E+ + I   +L +   S     + L++ Y + G++E  + +FD    
Sbjct: 157 NAMLSGFAQNGFVEEARKIFDQMLVKNEISW----NGLLSAYVQNGRIEDARRLFDSKMD 212

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
            ++VSWN L+  Y        A  +F  M         IS+  ++   +  GL+ E + L
Sbjct: 213 WEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRL 268

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
           FE    E  IR  V  +  MV    +   L+EA +I E++  E     W +++       
Sbjct: 269 FE----ELPIR-DVFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQ 322

Query: 474 NVELAERASKRLFELEPT-NAGNYVLLADVYAAADMWDEVK 513
            +E A    + LF+  P+ N  ++  +   YA     D+ K
Sbjct: 323 QIEKA----RELFDQMPSRNTSSWNTMVTGYAQCGNIDQAK 359


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/621 (35%), Positives = 355/621 (57%), Gaps = 13/621 (2%)

Query: 47  LSSRNKNELIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNV 102
           + S + N +I    K G   +A+++     N    PT+ T+  +L +    + +     +
Sbjct: 213 IDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQI 272

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
           HS +    F  + F+   L++ YS  DSV DAR +FD+   +    +N +       G+ 
Sbjct: 273 HSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKH 332

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
           +   +L+R +  T      DR  + +     +AS+      + G++IHA  +    +  +
Sbjct: 333 KYAFDLFRELQFTAF----DRKQFPFATMLSIASNT--LDWEMGRQIHAQTIVTTADSEI 386

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
            +  +L+DMYA+ G    A  +F+ +  ++ V W+AMI+ Y + G   E L+LF +M   
Sbjct: 387 LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQA 446

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
           S  +  +  T  S+L+A A++A+L  GK +H +I++ G  S +   SAL+ +YA+CG ++
Sbjct: 447 S--VIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIK 504

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
                F  M  R++VSWN++IS+Y  +G     ++ FKEM+  G+ P  +SF+ VL ACS
Sbjct: 505 DAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACS 564

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
           H+GLVEEG   F SM + + + P  EHYA +VD+L R+ +  EA K++ ++ I+P   +W
Sbjct: 565 HSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMW 624

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEP-TNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
            S+L +CRIH N ELA RA+ +LF +E   +A  YV ++++YAAA  W+ V +V + +  
Sbjct: 625 SSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRD 684

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           RG++K+P  S +E+K + + F + D  HPQ E++   +  L+  M+E GY P T   L++
Sbjct: 685 RGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHN 744

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
            D + K   +  HSE+LA+AF LI+T +G  I + KNLR C DCH+  K ISK   +EI 
Sbjct: 745 EDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREIT 804

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           VRD  RFHHFR+G CSCGD+W
Sbjct: 805 VRDSTRFHHFRDGFCSCGDFW 825



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 178/376 (47%), Gaps = 9/376 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+  LL  C  H   +    V + +   G+D    +   L++ Y   + +D A  +
Sbjct: 147 PDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQL 206

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F +        +NA+    +  G  E+ + L+  M    +G++   FT+  VL A +   
Sbjct: 207 FKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQ--NSGLKPTEFTFAAVLCANI--- 261

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G   +  G++IH+ V++  +   V +   L+D Y++   V+ A  +F +M  ++ VS++
Sbjct: 262 -GLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYN 320

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            +I+ YA +G    A +LFRE+   + D         ++L   +     E G+ IH   +
Sbjct: 321 VIISGYAWDGKHKYAFDLFRELQFTAFD--RKQFPFATMLSIASNTLDWEMGRQIHAQTI 378

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
               DS + V ++LV MYA+CGK E  + +F ++  R  V W ++IS+Y   G+  + +Q
Sbjct: 379 VTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQ 438

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F +M    V     +F S+L A +    +  GK L   + K   +  +V   + ++D+ 
Sbjct: 439 LFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFM-SNVFSGSALLDVY 497

Query: 438 GRANKLEEAAKIIEDL 453
            +   +++A +  +++
Sbjct: 498 AKCGSIKDAVQTFQEM 513



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 158/338 (46%), Gaps = 19/338 (5%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           +I+ Y    ++ +AR +FD    RT   W  L    +   + +E  EL+ +M   GT   
Sbjct: 89  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGT--E 146

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D  T+  +L  C     G  +     ++   +++ GY+  + +  TL+D Y +   +  
Sbjct: 147 PDYVTFVTLLSGCNGHEMGNQI----TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDL 202

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  +F +M   + VS++AMI  Y+++G+  +A+ LF E  M++  L P   T  +VL A 
Sbjct: 203 ACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVE--MQNSGLKPTEFTFAAVLCAN 260

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
             L  +  G+ IH ++++      + V +AL+  Y++   +   + +FD M ++D VS+N
Sbjct: 261 IGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYN 320

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM-----LFE 415
            +IS Y   G    A  +F+E+ +         F ++L   S+    E G+      +  
Sbjct: 321 VIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVT 380

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           +   E ++  S      +VD+  +  K EEA  I  +L
Sbjct: 381 TADSEILVGNS------LVDMYAKCGKFEEAEMIFTNL 412


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/564 (38%), Positives = 336/564 (59%), Gaps = 32/564 (5%)

Query: 102 VHSHLTDNGFDQ--DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
           VH ++  N  D+  +  + T LI++Y     +  A+ +FD+  +R++  W  +      +
Sbjct: 211 VHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRS 270

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF-SLLKHGKEIHASVLRHGY 218
            R +E  + + RM      +    F     L + + + CGF   L  GK  HA +LR+G+
Sbjct: 271 CRLDEGAKNFNRM------LEEKLFPNEITLLSLI-TECGFVGTLDLGKWFHAYLLRNGF 323

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
              + ++T LIDMY + G V YA  +F+ +  K+V  WS +I+ YA      +   LF E
Sbjct: 324 GMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVE 383

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M+  ++D+ PN+VTMVS+L  CA   AL+ GK  H YI R GL+  + + +AL+ MYA+C
Sbjct: 384 ML--NNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKC 441

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G + + + +F+   +RD+  WN++++ + +HG G +A+++F EM  HGV P+ I+FVS+ 
Sbjct: 442 GDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIF 501

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSH+GL+E                    HY C+VDLLGRA  L+EA  IIE++ + P 
Sbjct: 502 HACSHSGLME--------------------HYGCLVDLLGRAGHLDEAHNIIENMPMRPN 541

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             +WG+LL +C++H N+ L E A++++ EL+P N G  VL +++YA+A  W++V  V+  
Sbjct: 542 TIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREA 601

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
           +   G++K PG S IEV   ++ F S D+   Q  +++ ++  +  +++E GY P T  V
Sbjct: 602 MSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAV 661

Query: 579 LYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANK 638
           L ++D EEKE  +  HSEKLA AFGLI+T+ G  IRI KNLR+C+DCH+ TK +SK   +
Sbjct: 662 LLNIDEEEKESALSYHSEKLATAFGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGR 721

Query: 639 EILVRDVNRFHHFRNGVCSCGDYW 662
            I+VRD NRFHHF  G CSC  YW
Sbjct: 722 TIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 195/401 (48%), Gaps = 13/401 (3%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LL +C   +S      +H     NGF  D F+   L+N+Y     +  AR VFD+   R 
Sbjct: 94  LLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERD 153

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  W  +      +    E L L R M   G  +          L + +A       +K 
Sbjct: 154 VVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSG------VALISLIAVFGNLLDMKS 207

Query: 206 GKEIHASVLRH-GYNGI-VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
           G+ +H  ++R+ G   + V + T LIDMY + GC+  A  +F +++ ++VVSW+ MIA  
Sbjct: 208 GRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGC 267

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
            R+    E  + F  M+ E   L PN +T++S++  C  +  L+ GK  H Y+LR G   
Sbjct: 268 IRSCRLDEGAKNFNRMLEEK--LFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGM 325

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            L +V+AL+ MY +CG++   + +F+ + K+DV  W+ LIS+Y       +   +F EM+
Sbjct: 326 SLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEML 385

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
            + V P+ ++ VS+L  C+ AG ++ GK     + + H +   V     ++++  +   +
Sbjct: 386 NNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINR-HGLEVDVILETALINMYAKCGDV 444

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIH-CNVELAERASK 483
             A  +  +  ++   ++W +++    +H C  E  E  S+
Sbjct: 445 TIARSLFNE-AMQRDIRMWNTMMAGFSMHGCGKEALELFSE 484



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 146/289 (50%), Gaps = 10/289 (3%)

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
           D F    +LKAC  +S G      G+E+H    ++G+   V +   L++MY + GC++ A
Sbjct: 87  DNFILPSLLKACAQASSG----DLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSA 142

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
             VF QM  ++VVSW+ M+ CY R+    EAL L REM      L  + V ++S++    
Sbjct: 143 RLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKL--SGVALISLIAVFG 200

Query: 302 ALAALEQGKMIHGYILRRGLDSILPV--VSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
            L  ++ G+ +HGYI+R   D  + V   +AL+ MY + G L   Q +FD + KR VVSW
Sbjct: 201 NLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSW 260

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
             +I+         +  + F  M+   + P+ I+ +S++  C   G ++ GK  F +   
Sbjct: 261 TVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKW-FHAYLL 319

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            +    S+     ++D+ G+  ++  A  +   ++ +   K+W  L+ +
Sbjct: 320 RNGFGMSLALVTALIDMYGKCGQVGYARALFNGVK-KKDVKIWSVLISA 367



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 137/293 (46%), Gaps = 28/293 (9%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T   L+  C    +L      H++L  NGF     LVT LI++Y     V  AR +
Sbjct: 290 PNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARAL 349

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+  +++ + +W+ L  A       ++V  L+  M      ++ +  T   +L  C  + 
Sbjct: 350 FNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEM--LNNDVKPNNVTMVSLLSLCAEAG 407

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  GK  HA + RHG    V + T LI+MYA+ G V  A  +F++   +++  W+
Sbjct: 408 A----LDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWN 463

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            M+A ++ +G   EALELF E  MESH + PN +T VS+  AC+       G M H    
Sbjct: 464 TMMAGFSMHGCGKEALELFSE--MESHGVEPNDITFVSIFHACS-----HSGLMEH---- 512

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR-DVVSWNSLISSYGVH 369
                        LV +  R G L+    + ++M  R + + W +L+++  +H
Sbjct: 513 ----------YGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLH 555



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 122/248 (49%), Gaps = 11/248 (4%)

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP-NSVTMVSVLQACAAL 303
           FSQ       +++ +I+ Y  N +   +   +  + M S+D    ++  + S+L+ACA  
Sbjct: 44  FSQSHFTPEANYNLLISSYTNNHLPQASFNCY--LHMRSNDAAALDNFILPSLLKACAQA 101

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
           ++ + G+ +HG+  + G  S + V +AL+ MY +CG L   + VFD M +RDVVSW +++
Sbjct: 102 SSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTML 161

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM----LFESMRK 419
             Y      G+A+++ +EM + GV  S ++ +S++    +   ++ G+     +  ++  
Sbjct: 162 GCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGD 221

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
           E M    V     ++D+  +   L  A ++ + L  +     W  ++  C   C ++   
Sbjct: 222 EKM---EVSMTTALIDMYCKGGCLASAQRLFDRLS-KRSVVSWTVMIAGCIRSCRLDEGA 277

Query: 480 RASKRLFE 487
           +   R+ E
Sbjct: 278 KNFNRMLE 285



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 26/194 (13%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
           +++L+ +  P   T   LL  C    +L      H+++  +G + D  L T LIN+Y+  
Sbjct: 382 VEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKC 441

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
             V  AR +F++  +R I +WN +    ++ G G+E LEL+  M     G+  +  T+  
Sbjct: 442 GDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEME--SHGVEPNDITFVS 499

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           +  AC                        ++G++     L+D+  R G +  A  +   M
Sbjct: 500 IFHAC-----------------------SHSGLMEHYGCLVDLLGRAGHLDEAHNIIENM 536

Query: 249 AVK-NVVSWSAMIA 261
            ++ N + W A++A
Sbjct: 537 PMRPNTIIWGALLA 550


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/639 (36%), Positives = 365/639 (57%), Gaps = 43/639 (6%)

Query: 38  LNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLS 97
           L ++ TP  L +++K+ L  +   Q                 QH     L  CT   +L+
Sbjct: 6   LAATPTPFLLPAKSKSPLAAAPAAQ-----------------QHPLLPYLPQCTTLRALA 48

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA-----RHVFDKTRRRTIYVW-NA 151
               +H+    +G    P  VT+L+ + +   +   A     R VFD+       VW N 
Sbjct: 49  ---QLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWYNT 105

Query: 152 LFRAL---TLAG----RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK 204
           L R     + AG      EE   ++ RM     G+  D +T+  +LKAC A+  G    +
Sbjct: 106 LLRGYARCSAAGGARPPAEEAARVFVRM--LEEGVAPDTYTFVSLLKACAAARAG----E 159

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
            G++ H   ++ G     +++ TLI+MYA  G    A  +F ++  + VVS++AMI    
Sbjct: 160 EGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAV 219

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           R+    EAL LFREM  ++  L   SVT++SVL ACA L ALE G+ IH Y+ +  LDS+
Sbjct: 220 RSSRPGEALVLFREM--QAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSL 277

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + V +AL+ MY +CG LE    VF  M+ RD  +W+ +I +Y  H YG +AI +F+EM  
Sbjct: 278 VKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKK 337

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            G+ P  ++F+ VL ACSH+GLV EG   F+SMR+  ++ P ++HY C+ DLL R+ +L+
Sbjct: 338 QGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMREFGLV-PGIKHYGCVADLLARSGQLD 396

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
            A + I++L I+P   +W +LL +C    + +L ++  +R+ EL+ ++ G+YV+ +++ A
Sbjct: 397 RAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCA 456

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
               W+E+ RV++L+  +G+ KVPG S IEV  +++ F + D  HP+      ++  +  
Sbjct: 457 NTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDGVIE 516

Query: 565 EMKEKGYVPQTKVVLY-DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCE 623
           ++K  GYVP T  V + ++  EEK   +  HSEKLA++FGL+NTS G T+R+ KNLR+C 
Sbjct: 517 QLKLAGYVPNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVVKNLRVCP 576

Query: 624 DCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           DCHS  K +S   N+ I++RD+NRFHHF +GVCSCGDYW
Sbjct: 577 DCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/618 (35%), Positives = 352/618 (56%), Gaps = 44/618 (7%)

Query: 81   HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
              Y + L +CT    +   + +H  L   GFD D +L   L+N Y     ++ A  VF +
Sbjct: 524  EVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHE 583

Query: 141  TRRRTIYVWNALFRALTLAGRGEEV---LELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
                   +WN    A+ L  + E++   +EL+R+M  +   ++++  T   VL+A + S 
Sbjct: 584  MPNPEALLWN---EAIILNLQSEKLQKGVELFRKMQFSF--LKAETATIVRVLQASI-SE 637

Query: 198  CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
             GF  L  GKE H  VLR+G++  V++ T+LIDMY +   +  A  VF  M  +N+ +W+
Sbjct: 638  LGF--LNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWN 695

Query: 258  AMIACYARNGMAFEALELFREM---------------------------------IMESH 284
            ++++ Y+  GM  +AL L  +M                                  M+  
Sbjct: 696  SLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQE 755

Query: 285  DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
             + PNS ++  +L+ACA+L+ L++GK IH   +R G    + V +AL+ MY++   L+  
Sbjct: 756  GVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNA 815

Query: 345  QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
              VF  +  + + SWN +I  + + G G +AI +F EM   GV P  I+F ++L AC ++
Sbjct: 816  HKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNS 875

Query: 405  GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
            GL+ EG   F+SM  ++ I P +EHY CMVDLLGRA  L+EA  +I  + ++P   +WG+
Sbjct: 876  GLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGA 935

Query: 465  LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
            LLGSCRIH N++ AE A+K LF+LEP N+ NY+L+ ++Y+  + W+++  ++ L+ A G+
Sbjct: 936  LLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGV 995

Query: 525  QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
            +     S I++ ++++ F S ++ HP   +++  L  L +EMK+ GYVP    V  ++D 
Sbjct: 996  RNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDE 1055

Query: 585  EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
             EK++I+L H+EKLA+ +GLI    GE IR+ KN R+C DCHS  K+IS    +E+ +RD
Sbjct: 1056 VEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRD 1115

Query: 645  VNRFHHFRNGVCSCGDYW 662
              RFHHFR G CSC D+W
Sbjct: 1116 GVRFHHFREGKCSCNDFW 1133



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 11/197 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   +   LL +C   + L     +H     NGF +D F+ T LI++YS   S+ +A  V
Sbjct: 759 PNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKV 818

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F + + +T+  WN +     + G G+E + ++  M   G G   D  T+T +L AC  S 
Sbjct: 819 FRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG--PDAITFTALLSACKNS- 875

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHI--MTTLIDMYARFGCVMYAGFVFSQMAVK-NVV 254
               L+  G +   S++   Y  +  +     ++D+  R G +  A  +   M +K +  
Sbjct: 876 ---GLIGEGWKYFDSMITD-YRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDAT 931

Query: 255 SWSAMI-ACYARNGMAF 270
            W A++ +C     + F
Sbjct: 932 IWGALLGSCRIHKNLKF 948


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/618 (36%), Positives = 354/618 (57%), Gaps = 43/618 (6%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L +C    + S    VH +   +G  +D F+   ++++Y+    +++A  VF++ + + 
Sbjct: 256 VLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKD 315

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK- 204
           +  WNA+    +  GR ++ L L+ ++      I  +  T++ V+        GF  L  
Sbjct: 316 VVSWNAMVTGYSQIGRFDDALGLFEKIREEK--IELNVVTWSAVIAGYAQRGLGFEALDV 373

Query: 205 ------------------------------HGKEIHASVLRHGYN-------GIVHIMTT 227
                                         HGKE H   ++   N         + ++  
Sbjct: 374 FRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINA 433

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKN--VVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           LIDMY++      A  +F  +  K+  VV+W+ +I   A++G A EALELF +M+   + 
Sbjct: 434 LIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNF 493

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS-ILPVVSALVTMYARCGKLELG 344
           + PN+ T+   L ACA L AL  G+ IH Y+LR   +S +L V + L+ MY++ G ++  
Sbjct: 494 VMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAA 553

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           + VFD+M +R+ VSW SL++ YG+HG G +A+QIF EM    + P  ++FV VL ACSH+
Sbjct: 554 RVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHS 613

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+V++G   F  M K+  + P  EHYACMVDLL RA +L+EA ++I  + ++P P VW +
Sbjct: 614 GMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVA 673

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +CR++ NVEL E A+ +L ELE  N G+Y LL+++YA A  W +V R++ L++  G+
Sbjct: 674 LLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGI 733

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +K PG S ++ ++   +F + D  HP  +Q++ LL +L   +K  GYVP  +  L+D+D 
Sbjct: 734 KKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDD 793

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           EEK  ++  HSEKLA+A+G++ T+ G  IRITKNLR C DCHS   +IS     EI+VRD
Sbjct: 794 EEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRD 853

Query: 645 VNRFHHFRNGVCSCGDYW 662
            +RFHHF+NG CSC  YW
Sbjct: 854 SSRFHHFKNGSCSCRGYW 871



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 179/357 (50%), Gaps = 50/357 (14%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK--TRRRTIYVWNAL 152
           SL+ A   H  L   G   DP   T +I++Y  F+S   A  V  +      T++ WN L
Sbjct: 60  SLASAELTHQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQL 116

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
            R     G  E+VL+LYRRM   G   R D +T+ +VLKAC          + G  +HA 
Sbjct: 117 IRRSVHLGFLEDVLQLYRRMQRLGW--RPDHYTFPFVLKACGE----IPSFRCGASVHAV 170

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM---AVKNVVSWSAMIACYARNGMA 269
           V   G+   V +   L+ MY R G    A  VF +M    V ++VSW++++A Y + G +
Sbjct: 171 VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDS 230

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
             A+++F  M  E   + P++V++V+VL ACA++ A  +GK +HGY LR GL   + V +
Sbjct: 231 IRAMKMFERMT-EDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN 289

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL--------------------------- 362
           A+V MYA+CG +E    VF+ M  +DVVSWN++                           
Sbjct: 290 AVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIEL 349

Query: 363 --------ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
                   I+ Y   G G +A+ +F++M+  G  P+ ++ VS+L  C+ AG +  GK
Sbjct: 350 NVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGK 406



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 133/499 (26%), Positives = 234/499 (46%), Gaps = 64/499 (12%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDA 99
           P+S +    N+LI+     G L   L +      +   P  +T+  +L +C    S    
Sbjct: 105 PSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCG 164

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI---YVWNALFRAL 156
            +VH+ +  +GF+ + F+   L+++Y    + ++AR VFD+ R R +     WN++  A 
Sbjct: 165 ASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAY 224

Query: 157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
              G     ++++ RM     GIR D  +   VL AC AS   +S    GK++H   LR 
Sbjct: 225 MQGGDSIRAMKMFERMT-EDLGIRPDAVSLVNVLPAC-ASVGAWS---RGKQVHGYALRS 279

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK------------------------- 251
           G    V +   ++DMYA+ G +  A  VF +M VK                         
Sbjct: 280 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 339

Query: 252 ----------NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
                     NVV+WSA+IA YA+ G+ FEAL++FR+M++   +  PN VT+VS+L  CA
Sbjct: 340 EKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSE--PNVVTLVSLLSGCA 397

Query: 302 ALAALEQGKMIHGYILRR--GLDSILP-----VVSALVTMYARCGKLELGQCVFDHMDKR 354
           +   L  GK  H + ++    LD   P     V++AL+ MY++C   +  + +FD +  +
Sbjct: 398 SAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPK 457

Query: 355 D--VVSWNSLISSYGVHGYGGKAIQIFKEMIY--HGVSPSPISFVSVLGACSHAGLVEEG 410
           D  VV+W  LI     HG   +A+++F +M+   + V P+  +    L AC+  G +  G
Sbjct: 458 DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 517

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           + +   + +       +    C++D+  ++  ++ A  + +++    G   W SL+    
Sbjct: 518 RQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVS-WTSLMTGYG 576

Query: 471 IHCNVELAERASKRLFELE 489
           +H      E A +  +E++
Sbjct: 577 MHGR---GEEALQIFYEMQ 592



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 120/306 (39%), Gaps = 51/306 (16%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQALDVLS--IEPN----PTQHTYELLLLSCTHHNSLS 97
           P   S      LI    + G   +AL++ S  ++P+    P   T    L++C    +L 
Sbjct: 456 PKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALR 515

Query: 98  DALNVHSHLTDNGFDQDPFLVTK-LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL 156
               +H+++  N F+     V   LI++YS    VD AR VFD   +R    W +L    
Sbjct: 516 FGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGY 575

Query: 157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
            + GRGEE L+++  M      +  D  T+  VL AC                H+ ++  
Sbjct: 576 GMHGRGEEALQIFYEMQ--KVXLVPDGVTFVVVLYACS---------------HSGMVDQ 618

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
           G N           M   FG             V     ++ M+   +R G   EA+EL 
Sbjct: 619 GIN-------YFNGMNKDFG------------VVPGAEHYACMVDLLSRAGRLDEAMELI 659

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI--LRRGLDSILPVVSALVTM 334
           R M M+     P     V++L AC   A +E G+     +  L  G D    ++S +   
Sbjct: 660 RGMPMK-----PTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYA- 713

Query: 335 YARCGK 340
            ARC K
Sbjct: 714 NARCWK 719


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/616 (36%), Positives = 350/616 (56%), Gaps = 46/616 (7%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++++    G   +A+D+      +       TY  +L  C           VH  +  
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVR 160

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF  D F+   L+++Y+    + DA  VFD+   R +  W A+      A R  + L L
Sbjct: 161 TGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALML 220

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +R+M   G       F    +    VAS+ G   L  G+                     
Sbjct: 221 FRKMQEEG-------FLGDEITAISVASAVG--QLGDGRM-------------------- 251

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
                    +  A  VF +M  +N +SW++M++ Y +NG   +AL LF +M  ++ +  P
Sbjct: 252 --------AISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQM--QASECDP 301

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N VT + ++ AC+ L +   G+ +H +++   +D    + +A++ MY +CG L+    +F
Sbjct: 302 NPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMF 361

Query: 349 DH--MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           ++  + +RDV SWN LIS YGVHG+G +A+++F  M   GV P+ I+F S+L ACSHAGL
Sbjct: 362 NNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGL 421

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           ++EG+  F  M K   +RP ++HYACMVD+LGRA  L EA ++I+ +   P  +VWG+LL
Sbjct: 422 IDEGRKCFADMTKLS-VRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALL 480

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +CRIH N EL E A+  LF+LEP + G YVL++++YAA++ W EV+ V++ +++RGL+K
Sbjct: 481 LACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKK 540

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
               S IE   +++ F + D+  P + +++  + +L+ EMK  GYVP    VL+D++ E+
Sbjct: 541 PAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPED 600

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE ++  HSEKLAVAFG++   +G  I++TKNLR+C DCH   KFIS    ++I+VRD N
Sbjct: 601 KEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGN 660

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF+ G CSCGDYW
Sbjct: 661 RFHHFQGGRCSCGDYW 676



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD-QDPFLVTKLINVYSHFDSVDDARHVF 138
            H Y+ LL  CT   SL+    +HS L+  GF    P  + +LI +YS    +  AR +F
Sbjct: 25  HHFYDHLLQCCT---SLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLF 81

Query: 139 DK--------TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           D         T+    ++ N + RA   AGR  E ++LY  M   G G+  + FTY +VL
Sbjct: 82  DHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGV--NNFTYPFVL 139

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
           K C AS  G      G+ +H  V+R G+   + +   L+DMYA+ G +  A  VF +M +
Sbjct: 140 KVC-ASELGAVF---GEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLI 195

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           ++VV W+AMI  Y +     +AL LFR+  M+      + +T +SV    +A+  L  G+
Sbjct: 196 RDVVCWTAMITLYEQAERPLKALMLFRK--MQEEGFLGDEITAISV---ASAVGQLGDGR 250

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
           M                             +   + VFD M++R+ +SWNS++S Y  +G
Sbjct: 251 M----------------------------AISRARLVFDRMEERNGISWNSMLSGYTQNG 282

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
               A+ +F +M      P+P++ + ++ ACS+ G    G+ L   +    M   +    
Sbjct: 283 RPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN 342

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRI-EPGPKVWGSLLGSCRIH 472
           A M D+  +   L+ A ++  +  + E     W  L+    +H
Sbjct: 343 AIM-DMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVH 384


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/481 (43%), Positives = 302/481 (62%), Gaps = 12/481 (2%)

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           FTY+ +L A    S          E+HA V++  Y     + T L+D Y + G V  A  
Sbjct: 2   FTYSVILTALPVISPS--------EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAK 53

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VFS +  K++V+WSAM+A YA+ G    A+++F E+      + PN  T  S+L  CAA 
Sbjct: 54  VFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELT--KGGIKPNEFTFSSILNVCAAT 111

Query: 304 -AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
            A++ QGK  HG+ ++  LDS L V SAL+TMYA+ G +E  + VF    ++D+VSWNS+
Sbjct: 112 NASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSM 171

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           IS Y  HG   KA+ +FKEM    V    ++F+ V  AC+HAGLVEEG+  F+ M ++  
Sbjct: 172 ISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCK 231

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERAS 482
           I P+ EH +CMVDL  RA +LE+A K+IE++    G  +W ++L +CR+H   EL   A+
Sbjct: 232 IAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAA 291

Query: 483 KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSF 542
           +++  ++P ++  YVLL+++YA +  W E  +V++L+  R ++K PG S IEVK K YSF
Sbjct: 292 EKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSF 351

Query: 543 VSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAF 602
           ++ D  HP  +Q++  L +LS  +K+ GY P T  VL D+D E KE ++  HSE+LA+AF
Sbjct: 352 LAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAF 411

Query: 603 GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF-RNGVCSCGDY 661
           GLI T KG  + I KNLR+C DCH   K I+K   +EI+VRD NRFHHF  +GVCSCGD+
Sbjct: 412 GLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDF 471

Query: 662 W 662
           W
Sbjct: 472 W 472



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 139/272 (51%), Gaps = 13/272 (4%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH+ +    +++   + T L++ Y     V++A  VF     + I  W+A+       G 
Sbjct: 19  VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGE 78

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            E  ++++  +  T  GI+ + FT++ +L  C A++     +  GK+ H   ++   +  
Sbjct: 79  TEAAIKMFGEL--TKGGIKPNEFTFSSILNVCAATNAS---MGQGKQFHGFAIKSRLDSS 133

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           + + + L+ MYA+ G +  A  VF +   K++VSW++MI+ YA++G A +AL++F+E  M
Sbjct: 134 LCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKE--M 191

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALVTMYARC 338
           +   +  + VT + V  AC     +E+G+     ++R     I P     S +V +Y+R 
Sbjct: 192 KKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDC--KIAPTKEHNSCMVDLYSRA 249

Query: 339 GKLELGQCVFDHM-DKRDVVSWNSLISSYGVH 369
           G+LE    V ++M +      W +++++  VH
Sbjct: 250 GQLEKAMKVIENMPNPAGSTIWRTILAACRVH 281


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/621 (36%), Positives = 353/621 (56%), Gaps = 28/621 (4%)

Query: 55  LIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT- 107
           +   LC  G    AL +L       +  +P       L+  C  H ++ D   +H H++ 
Sbjct: 37  IFSRLCLDGPFTAALALLPDIAAAGVRADPVSLCR--LIKLCVRHGTVGDGRAIHRHVSL 94

Query: 108 -----DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA-GR 161
                        F+   L+++Y+ F  +DDA  +F    +R +  W  +  AL  A GR
Sbjct: 95  CAHGGGGATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGR 154

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            +E L     M   G  + ++ +T++ VL AC       ++       HA +++ G +  
Sbjct: 155 KKEALRFLVEMRRDG--VAANSYTFSSVLGACGTPGVLAAM-------HADIIKVGLDSD 205

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V + ++LID Y + G +     VF +M   ++V W+++IA +A++G    A+ELF  M M
Sbjct: 206 VFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELF--MRM 263

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           +      N  T+ SVL+AC  +  LE G+ +H ++L+   D IL   +AL+ MY +CG L
Sbjct: 264 KESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLKYDRDLILH--NALLDMYCKCGCL 321

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
                +F  M  RDV+SW+++IS    +G   +A+++F  M   G +P+ I+ V VL AC
Sbjct: 322 LDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFAC 381

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SHAGLVE+G   F SM K   I+P  EH  CMVDLLGRA KL+EA K I +++ EP   +
Sbjct: 382 SHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVI 441

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W +LLG+CR+H N  LA  A+  + +LEP + G  +LL+++YA    W   ++  + +  
Sbjct: 442 WRTLLGACRMHKNATLASYAATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRD 501

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           +G++K PGRS IE+ + ++ F++ +  HP  +++   L  L    K+ GYVPQT+ VL D
Sbjct: 502 QGVKKEPGRSWIELGKLVHVFIAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQD 561

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           L  E+KE ++  HSEKLA+AFG +N+ +G+ +RI KNLR+C DCH+F K +SK   K I+
Sbjct: 562 LGTEQKEDLLKYHSEKLAIAFGTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAII 621

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           +RD  RFHHF++GVCSCGDYW
Sbjct: 622 IRDPVRFHHFQHGVCSCGDYW 642


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/547 (38%), Positives = 332/547 (60%), Gaps = 7/547 (1%)

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           F+  +L++ Y       DA  +FD+   + +  WN+L    +        L L  RM   
Sbjct: 74  FIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFE 133

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
             G++ +  T   V+ AC     G   L  GK IH   ++ G    V ++ +LI++Y + 
Sbjct: 134 -MGLKPNEVTVIPVVSACA----GVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKC 188

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           GC+  A  +F  M+V+++VSW++M+A +   G+A + +  F  ++M    +  +  T+VS
Sbjct: 189 GCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYF--IMMRRAGINSDQATVVS 246

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           +L AC  L   +  + +HGYIL  GLD  L + +AL+ +YA+ G L     VF  M   D
Sbjct: 247 LLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPD 306

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
            V+W +++SSY +HG G +AI+ F+ M+  GV P  ++F  +L ACSH+GLVEEGK  F+
Sbjct: 307 AVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFK 366

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
            M + + +   VEHY+CMVDLLGR+  L +A K+I+ + +EP   VWG+L+G+CR+  N+
Sbjct: 367 IMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNI 426

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           EL +  ++RLF L+P+++ NY+ L+++Y+AA  W +  +V+ L++ R L + PG S IE 
Sbjct: 427 ELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEH 486

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
             K++ FV  D+ HP  EQ++  L  L  + +E G+  +T+ VL+D+D E KE ++  HS
Sbjct: 487 GNKIHCFVMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHS 546

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EKLA+AFGL+ T+ G  + ITKN+R+C DCH F K IS    + I++RD  RFHHF NG+
Sbjct: 547 EKLAIAFGLLVTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGL 606

Query: 656 CSCGDYW 662
           CSCGDYW
Sbjct: 607 CSCGDYW 613


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/625 (36%), Positives = 362/625 (57%), Gaps = 23/625 (3%)

Query: 45   TSLSSRNKNEL-IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS---LSDAL 100
            T +SS  +N L ++++C     R   D+L     P Q T   +L +C+  +     +   
Sbjct: 965  TMISSYAQNNLEMEAIC---TFR---DLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGS 1018

Query: 101  NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
             VH +    G   D F+ T LI++YS    +D+A  +        +  WNA+      + 
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078

Query: 161  RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
            +  + LE +  M+  G  I  D  T    +KA   S C  +L K GK+I A  ++ G+N 
Sbjct: 1079 KSRKALEHFSLMHEMGIPI--DEITLATAIKA---SGCLINL-KQGKQIQAYAIKLGFNN 1132

Query: 221  IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
             + + + ++DMY + G +  A  +F +++  + V+W+ MI+ Y  NG    AL ++   +
Sbjct: 1133 DLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYH--L 1190

Query: 281  MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP--VVSALVTMYARC 338
            M    + P+  T  ++++A + L ALEQGK IH  +++  LD  L   V ++LV MY +C
Sbjct: 1191 MRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVK--LDYSLDHFVGTSLVDMYCKC 1248

Query: 339  GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
            G ++    VF  MD R VV WN+++     HG+  +A+ +F+ M  +G+ P  ++F+ VL
Sbjct: 1249 GSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVL 1308

Query: 399  GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
             ACSH+GL  E    F++M K + I P +EHY+C+VD LGRA +++EA  +I  +  +  
Sbjct: 1309 SACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKAS 1368

Query: 459  PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
              ++ +LLG+CR   + E A+R + +L  L+P+++  YVLL+++YAA+  WD+V   + +
Sbjct: 1369 ASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNM 1428

Query: 519  LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKG-YVPQTKV 577
            ++ + ++K PG S I+VK K++ FV  D  HPQ   ++  + +L   ++E+G YVP T  
Sbjct: 1429 MKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDF 1488

Query: 578  VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
             L D++ EEKER +  HSEKLA+AFGLI+T    TIR+ KNLR+C DCHS  K ISK   
Sbjct: 1489 TLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQ 1548

Query: 638  KEILVRDVNRFHHFRNGVCSCGDYW 662
            +EI++RD NRFHHFRNG CSCGDYW
Sbjct: 1549 REIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 160/350 (45%), Gaps = 41/350 (11%)

Query: 102  VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
            VH +    GF+ D F+   L+N+Y  +  V  AR +FDK   R   +WN + +A      
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 162  GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
             +E L  +   + +G       F+  + +   V S    +  +H +++ A  ++      
Sbjct: 799  QDEALRFFSAFHRSGF---XPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKM----- 850

Query: 222  VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
                                 F F Q +  N+ +W+  +  +   G    A++ F+ ++ 
Sbjct: 851  ---------------------FPFDQGS--NIFAWNKKLTEFLHAGQIVAAIDCFKTLLR 887

Query: 282  ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
             +  +  +SVT+V +L A      L+ G+ IH  +++     ++PV ++L+ MY++ G +
Sbjct: 888  ST--IGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVV 945

Query: 342  ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
               +  F +  + D++SWN++ISSY  +    +AI  F++++  G+ P   +  SVL AC
Sbjct: 946  YAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRAC 1005

Query: 402  SHAGLVEEGKML-FESMRKEHMIRPSVEHYA----CMVDLLGRANKLEEA 446
            S     +EG+     S    + I+  + + +     ++DL  +  K++EA
Sbjct: 1006 STG---DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 171/372 (45%), Gaps = 21/372 (5%)

Query: 55   LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
            L+   CK G + QA  +    P      + ++L +   ++   +AL   S    +GF  D
Sbjct: 758  LVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817

Query: 115  PFLVTKLINVYSHFDSVDDARH----------VFDKTRRRTIYVWNALFRALTLAGRGEE 164
               +  +I   +   S +  RH          +F   +   I+ WN        AG+   
Sbjct: 818  FSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVA 877

Query: 165  VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
             ++ ++ +  +  G   D  T   +L A V    G   L  G++IHA V++  +  +V +
Sbjct: 878  AIDCFKTLLRSTIG--HDSVTLVIILSAAV----GADDLDLGEQIHALVIKSSFAPVVPV 931

Query: 225  MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
              +L++MY++ G V  A   F      +++SW+ MI+ YA+N +  EA+  FR+++ +  
Sbjct: 932  SNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDG- 990

Query: 285  DLCPNSVTMVSVLQACAALAALEQ---GKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
             L P+  T+ SVL+AC+     E    G  +H Y ++ G+ +   V +AL+ +Y++ GK+
Sbjct: 991  -LKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKM 1049

Query: 342  ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
            +  + +       D+ SWN+++  Y       KA++ F  M   G+    I+  + + A 
Sbjct: 1050 DEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKAS 1109

Query: 402  SHAGLVEEGKML 413
                 +++GK +
Sbjct: 1110 GCLINLKQGKQI 1121



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 105/210 (50%), Gaps = 3/210 (1%)

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           S+   + LK GK  HA ++  G     ++   LI MY++ G +  A  VF + + +++V+
Sbjct: 620 SAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVT 679

Query: 256 WSAMIACYAR--NGMAFEALELFREM-IMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           W++++A YA+  +      LE FR   ++         +T+  +L+ C     ++  + +
Sbjct: 680 WNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETV 739

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           HGY ++ G +  L V  ALV +Y + G +   + +FD M +RD V WN ++ +Y  + + 
Sbjct: 740 HGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQ 799

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
            +A++ F      G  P   +   V+G  +
Sbjct: 800 DEALRFFSAFHRSGFXPDFSNLHCVIGGVN 829



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 7/178 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
            H+ +  +G   D +L   LI +YS   S+  AR VFDK+  R +  WN++  A      
Sbjct: 633 AHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFAD 692

Query: 162 G--EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS-LLKHGKEIHASVLRHGY 218
              E VLE +R        +R   F+ T +  A +   C  S  ++  + +H   ++ G+
Sbjct: 693 SSYENVLEGFRLFG----LLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
              + +   L+++Y ++G V  A  +F +M  ++ V W+ M+  Y  N    EAL  F
Sbjct: 749 ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 344/611 (56%), Gaps = 18/611 (2%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           +Q+ C    +   L +L     P  ++   ++ +CT   S+     +HS     G   D 
Sbjct: 222 VQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDS 281

Query: 116 FLVTKLINVYSHFD---SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE-VLELYRR 171
            +   L+++Y+      S++ AR VF    R  +  W AL      +G  E  V+ L+R 
Sbjct: 282 CVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFRE 341

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           M      IR +  TY+ +LKAC       S    G++IHA VL+     +  +   L+ M
Sbjct: 342 M--LNESIRPNHITYSNLLKACA----NLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSM 395

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           YA  GC+  A   F Q+   N++S S  +     N      +E   + +        ++ 
Sbjct: 396 YAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGMDDGV--------STF 447

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T  S+L A A++  L +G+ +H   ++ G  S   + ++LV+MYARCG LE     FD M
Sbjct: 448 TFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEM 507

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
              +V+SW S+IS    HGY  +A+ +F +MI  GV P+ +++++VL ACSH GLV+EGK
Sbjct: 508 KDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGK 567

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
             F SM+K+H + P +EHYAC+VDLL R+  +EEA + I ++  +    VW +LL +CR 
Sbjct: 568 EHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRT 627

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           + N E+ E A+  +  LEP +   YVLL+++YA A +WDEV R++ L+  + L K  G S
Sbjct: 628 YGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLS 687

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            ++V   ++ F + D  HP    ++A L+ L  E+K+ GYVP T +VL+D+  E KE+ +
Sbjct: 688 WMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQYL 747

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
           L HSEK+AVAFGLI TS  + +RI KNLR+C DCHS  K+ISK   +EI++RD NRFH  
Sbjct: 748 LQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRM 807

Query: 652 RNGVCSCGDYW 662
           ++G+CSCG+YW
Sbjct: 808 KDGICSCGEYW 818



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 22/353 (6%)

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKT-RRRTIYVWNALFRALTLAGRGEEVLELY 169
            D D  +   L+ +YS   +V+ AR VFD+    R +  W A+  A  LA  G E   L 
Sbjct: 72  LDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAM--ASCLARNGAERESLR 129

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI-VHIMTTL 228
                   G+R + FT     +AC      F L   G  +   VL+ G+ G  V +   L
Sbjct: 130 LLGEMLELGLRPNAFTLCAAARACFPQEL-FRLA--GGVVLGFVLKTGFWGTDVSVGCAL 186

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDM+AR G ++ A  VF  +  +  V W+ +I  Y + G A + +ELF  M+ +  +  P
Sbjct: 187 IDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFE--P 244

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG---KLELGQ 345
           +  +M S++ AC  L ++  G+ +H   LR GL S   V   LV MYA+      +E  +
Sbjct: 245 DGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHAR 304

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYG-GKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
            VF  M + +V+SW +LIS Y   G      + +F+EM+   + P+ I++ ++L AC++ 
Sbjct: 305 KVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANL 364

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHY----ACMVDLLGRANKLEEAAKIIEDL 453
              + G+ +       H+++ S+ H       +V +   +  +EEA K  + L
Sbjct: 365 SDQDSGRQI-----HAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQL 412



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 170/338 (50%), Gaps = 19/338 (5%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LI++++    +  A+ VFD    RT  VW  L      AG   +V+EL+  M     G  
Sbjct: 186 LIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHM--LDDGFE 243

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG---C 237
            D ++ + ++ AC         ++ G+++H+  LR G      +   L+DMYA+      
Sbjct: 244 PDGYSMSSMISACTE----LGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERS 299

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMA-FEALELFREMIMESHDLCPNSVTMVSV 296
           + +A  VF  M   NV+SW+A+I+ Y ++G+     + LFREM+ ES  + PN +T  ++
Sbjct: 300 MEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNES--IRPNHITYSNL 357

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           L+ACA L+  + G+ IH ++L+  +  +  V +ALV+MYA  G +E  +  FD + + ++
Sbjct: 358 LKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNI 417

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           +S +  + +   +      I+   + +      S  +F S+L A +  GL+ +G+ L  +
Sbjct: 418 LSMSPDVETERNNASCSSKIEGMDDGV------STFTFASLLSAAASVGLLTKGQKL-HA 470

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           +  +   R        +V +  R   LE+A +  ++++
Sbjct: 471 LSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMK 508



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 113/215 (52%), Gaps = 6/215 (2%)

Query: 203 LKHGKEIHASVLRHG-YNGIVHIMTTLIDMYARFGCVMYAGFVFSQM-AVKNVVSWSAMI 260
           L+ G+ +H  +LR    +    +  +L+ MY++ G V  A  VF QM  V+++VSW+AM 
Sbjct: 56  LRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMA 115

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE-QGKMIHGYILRR 319
           +C ARNG   E+L L  EM+       PN+ T+ +  +AC         G ++ G++L+ 
Sbjct: 116 SCLARNGAERESLRLLGEMLELGLR--PNAFTLCAAARACFPQELFRLAGGVVLGFVLKT 173

Query: 320 GL-DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
           G   + + V  AL+ M+AR G L   Q VFD + +R  V W  LI+ Y   G   K +++
Sbjct: 174 GFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVEL 233

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           F  M+  G  P   S  S++ AC+  G V  G+ L
Sbjct: 234 FLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQL 268


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/625 (36%), Positives = 362/625 (57%), Gaps = 23/625 (3%)

Query: 45   TSLSSRNKNEL-IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS---LSDAL 100
            T +SS  +N L ++++C     R   D+L     P Q T   +L +C+  +     +   
Sbjct: 965  TMISSYAQNNLEMEAIC---TFR---DLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGS 1018

Query: 101  NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
             VH +    G   D F+ T LI++YS    +D+A  +        +  WNA+      + 
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078

Query: 161  RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
            +  + LE +  M+  G  I  D  T    +KA   S C  +L K GK+I A  ++ G+N 
Sbjct: 1079 KSRKALEHFSLMHEMGIPI--DEITLATAIKA---SGCLINL-KQGKQIQAYAIKLGFNN 1132

Query: 221  IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
             + + + ++DMY + G +  A  +F +++  + V+W+ MI+ Y  NG    AL ++   +
Sbjct: 1133 DLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYH--L 1190

Query: 281  MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP--VVSALVTMYARC 338
            M    + P+  T  ++++A + L ALEQGK IH  +++  LD  L   V ++LV MY +C
Sbjct: 1191 MRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVK--LDYSLDHFVGTSLVDMYCKC 1248

Query: 339  GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
            G ++    VF  MD R VV WN+++     HG+  +A+ +F+ M  +G+ P  ++F+ VL
Sbjct: 1249 GSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVL 1308

Query: 399  GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
             ACSH+GL  E    F++M K + I P +EHY+C+VD LGRA +++EA  +I  +  +  
Sbjct: 1309 SACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKAS 1368

Query: 459  PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
              ++ +LLG+CR   + E A+R + +L  L+P+++  YVLL+++YAA+  WD+V   + +
Sbjct: 1369 ASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNM 1428

Query: 519  LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKG-YVPQTKV 577
            ++ + ++K PG S I+VK K++ FV  D  HPQ   ++  + +L   ++E+G YVP T  
Sbjct: 1429 MKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDF 1488

Query: 578  VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
             L D++ EEKER +  HSEKLA+AFGLI+T    TIR+ KNLR+C DCHS  K ISK   
Sbjct: 1489 TLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQ 1548

Query: 638  KEILVRDVNRFHHFRNGVCSCGDYW 662
            +EI++RD NRFHHFRNG CSCGDYW
Sbjct: 1549 REIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 160/350 (45%), Gaps = 41/350 (11%)

Query: 102  VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
            VH +    GF+ D F+   L+N+Y  +  V  AR +FDK   R   +WN + +A      
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 162  GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
             +E L  +   + +G       F+  + +   V S    +  +H +++ A  ++      
Sbjct: 799  QDEALRFFSAFHRSGF---FPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKM----- 850

Query: 222  VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
                                 F F Q +  N+ +W+  +  +   G    A++ F+ ++ 
Sbjct: 851  ---------------------FPFDQGS--NIFAWNKKLTEFLHAGQIVAAIDCFKTLLR 887

Query: 282  ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
             +  +  +SVT+V +L A      L+ G+ IH  +++     ++PV ++L+ MY++ G +
Sbjct: 888  ST--IGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVV 945

Query: 342  ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
               +  F +  + D++SWN++ISSY  +    +AI  F++++  G+ P   +  SVL AC
Sbjct: 946  YAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRAC 1005

Query: 402  SHAGLVEEGKML-FESMRKEHMIRPSVEHYA----CMVDLLGRANKLEEA 446
            S     +EG+     S    + I+  + + +     ++DL  +  K++EA
Sbjct: 1006 STG---DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 171/372 (45%), Gaps = 21/372 (5%)

Query: 55   LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
            L+   CK G + QA  +    P      + ++L +   ++   +AL   S    +GF  D
Sbjct: 758  LVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD 817

Query: 115  PFLVTKLINVYSHFDSVDDARH----------VFDKTRRRTIYVWNALFRALTLAGRGEE 164
               +  +I   +   S +  RH          +F   +   I+ WN        AG+   
Sbjct: 818  FSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVA 877

Query: 165  VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
             ++ ++ +  +  G   D  T   +L A V    G   L  G++IHA V++  +  +V +
Sbjct: 878  AIDCFKTLLRSTIG--HDSVTLVIILSAAV----GADDLDLGEQIHALVIKSSFAPVVPV 931

Query: 225  MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
              +L++MY++ G V  A   F      +++SW+ MI+ YA+N +  EA+  FR+++ +  
Sbjct: 932  SNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDG- 990

Query: 285  DLCPNSVTMVSVLQACAALAALEQ---GKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
             L P+  T+ SVL+AC+     E    G  +H Y ++ G+ +   V +AL+ +Y++ GK+
Sbjct: 991  -LKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKM 1049

Query: 342  ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
            +  + +       D+ SWN+++  Y       KA++ F  M   G+    I+  + + A 
Sbjct: 1050 DEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKAS 1109

Query: 402  SHAGLVEEGKML 413
                 +++GK +
Sbjct: 1110 GCLINLKQGKQI 1121



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 107/210 (50%), Gaps = 3/210 (1%)

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           S+   + LK GK  HA ++  G     ++   LI MY++ G +  A  VF + + +++V+
Sbjct: 620 SAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVT 679

Query: 256 WSAMIACYAR-NGMAFE-ALELFREM-IMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           W++++A YA+    ++E  LE FR   ++         +T+  +L+ C     ++  + +
Sbjct: 680 WNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETV 739

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           HGY ++ G +  L V  ALV +Y + G +   + +FD M +RD V WN ++ +Y  + + 
Sbjct: 740 HGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQ 799

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
            +A++ F      G  P   +   V+G  +
Sbjct: 800 DEALRFFSAFHRSGFFPDFSNLHCVIGGVN 829



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 7/178 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
            H+ +  +G   D +L   LI +YS   S+  AR VFDK+  R +  WN++  A      
Sbjct: 633 AHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFAD 692

Query: 162 G--EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS-LLKHGKEIHASVLRHGY 218
              E VLE +R        +R   F+ T +  A +   C  S  ++  + +H   ++ G+
Sbjct: 693 SSYENVLEGFRLFG----LLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
              + +   L+++Y ++G V  A  +F +M  ++ V W+ M+  Y  N    EAL  F
Sbjct: 749 ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/585 (36%), Positives = 348/585 (59%), Gaps = 8/585 (1%)

Query: 78   PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
            P Q TY  +L +CT   +L     +H+H+   GF  + ++ + LI++Y+ +  +  A  +
Sbjct: 461  PNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRI 520

Query: 138  FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
              +     +  W A+           E L+L+  M   G  I+ D   +   + AC    
Sbjct: 521  LRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRG--IQFDNIGFASAISACA--- 575

Query: 198  CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
             G   L+ G++IHA     G+   + I   LI +YAR G +  A   F ++  KN +SW+
Sbjct: 576  -GIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWN 634

Query: 258  AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            ++++  A++G   EAL++F  M+    ++  N  T  S + A A+LA ++QG+ IH  +L
Sbjct: 635  SLVSGLAQSGYFEEALQVFVRMLRTEAEV--NMFTYGSAISAAASLANIKQGQQIHSMVL 692

Query: 318  RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
            + G DS   V ++L+++YA+ G +      F+ M +R+V+SWN++I+ Y  HG G +A++
Sbjct: 693  KTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALR 752

Query: 378  IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
            +F+EM   G+ P+ ++FV VL ACSH GLV+EG   FESM K H + P  EHY C+VDLL
Sbjct: 753  LFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLL 812

Query: 438  GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            GRA +L+ A + I+++ I     +W +LL +C IH N+E+ ERA+  L ELEP ++  YV
Sbjct: 813  GRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYV 872

Query: 498  LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
            L++++YA +  W      ++L++ RG++K PGRS IEVK  +++F + D+ HP   Q++ 
Sbjct: 873  LISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYE 932

Query: 558  LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
             + +L+    E GYV  +  +L + +  +K+ I   HSEKLA+AFGL++      IR+ K
Sbjct: 933  YIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMK 992

Query: 618  NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            NLR+C DCH++ K++SK +N+ I+VRD +RFHHF  GVCSC D+W
Sbjct: 993  NLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 187/370 (50%), Gaps = 8/370 (2%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
             Y  LL  C    SL + + +H  ++ +GFD +P L+  L++ Y        A  VFD+
Sbjct: 59  QNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDE 118

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
              R+++ WN +           +V  L+RRM     GI  + +T+  VLKACV     F
Sbjct: 119 NSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM--LAEGITPNGYTFAGVLKACVGGDIAF 176

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           + +   K++H+    +G++    +   LID+Y++ G +  A  VF+ + +K++V+W AMI
Sbjct: 177 NYV---KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           +  ++NG+  EA+ LF +  M + ++ P    + SVL A   +   E G+ +H  +++ G
Sbjct: 234 SGLSQNGLEEEAILLFCD--MHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
             S   V + LV +Y+R  KL   + +F  M+ RD VS+NSLIS     G+  +A+++F 
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFT 351

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           +M    + P  I+  S+L AC+  G + +G  L     K  M    +     ++DL  + 
Sbjct: 352 KMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGM-SADIILEGSLLDLYSKC 410

Query: 441 NKLEEAAKII 450
             +E A K  
Sbjct: 411 ADVETAHKFF 420



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 207/464 (44%), Gaps = 23/464 (4%)

Query: 6   SPQTPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRN--KNELIQSLCKQG 63
           SP    LL   Y  N       K  +  C   + +     S  S+N  + E I   C   
Sbjct: 194 SPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFC--- 250

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
                 D+ + E  PT +    +L + T          +H  +   GF  + ++   L+ 
Sbjct: 251 ------DMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVA 304

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +YS    +  A  +F     R    +N+L   L   G  +  LEL+ +M      ++ D 
Sbjct: 305 LYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC--LKPDC 362

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
            T   +L AC +       L  G ++H+  ++ G +  + +  +L+D+Y++   V  A  
Sbjct: 363 ITVASLLSACASVGA----LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHK 418

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
            F     +N+V W+ M+  Y +     ++ E+FR+M ME   + PN  T  S+L+ C +L
Sbjct: 419 FFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEG--MIPNQFTYPSILRTCTSL 476

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
            AL  G+ IH ++++ G    + V S L+ MYA+ G+L L   +   + + DVVSW ++I
Sbjct: 477 GALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMI 536

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHM 422
           + Y  H    +A+Q+F+EM Y G+    I F S + AC+    + +G+ +  +S      
Sbjct: 537 AGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFG 596

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
              S+ +   ++ L  R  +++EA    E +  +     W SL+
Sbjct: 597 ADLSINN--ALISLYARCGRIQEAYLAFEKIG-DKNNISWNSLV 637



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 137/284 (48%), Gaps = 12/284 (4%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G+RS+   Y ++L+ C+ S   F  ++    +H  + + G++G   ++ +L+D Y R G 
Sbjct: 53  GVRSNYQNYLWLLEGCLTSGSLFETMR----LHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
              A  VF + + ++V SW+ MI  +      F+   LFR M+ E   + PN  T   VL
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEG--ITPNGYTFAGVL 166

Query: 298 QAC-AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           +AC     A    K +H      G DS   V + L+ +Y++ G +E  + VF+ +  +D+
Sbjct: 167 KACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDI 226

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           V+W ++IS    +G   +AI +F +M    + P+P    SVL A +   L E G+ L   
Sbjct: 227 VTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCL 286

Query: 417 MRKEHMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPG 458
           + K        E Y C  +V L  R+ KL  A +I   +    G
Sbjct: 287 VIKWGF---HSETYVCNGLVALYSRSRKLISAERIFSTMNSRDG 327



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+  L + G   +AL V    L  E      TY   + +     ++     +HS +  
Sbjct: 634 NSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLK 693

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+D +  +   LI++Y+   S+ DA   F+    R +  WNA+    +  G G E L L
Sbjct: 694 TGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRL 753

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
           +  M     GI  +  T+  VL AC  S  G  L+K G +   S+ +
Sbjct: 754 FEEMK--VCGIMPNHVTFVGVLSAC--SHIG--LVKEGLDYFESMFK 794



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%)

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
            ME   +  N    + +L+ C    +L +   +H  I + G D    ++ +LV  Y R G
Sbjct: 48  FMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHG 107

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
                  VFD    R V SWN +I  +       +   +F+ M+  G++P+  +F  VL 
Sbjct: 108 DQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLK 167

Query: 400 AC 401
           AC
Sbjct: 168 AC 169


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/557 (38%), Positives = 319/557 (57%), Gaps = 52/557 (9%)

Query: 111 FDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FD+ P       T +I+ Y+  + VD AR +F+    +    W A+ +  T +GR  E  
Sbjct: 194 FDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAA 253

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++ M                 + AC     GF                G NG V    
Sbjct: 254 ELFKAMP-------------VKPVAACNGMIMGF----------------GLNGEVG--- 281

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
                         A +VF QM  K+  +WSA+I  Y R G   EAL LF   +M+   +
Sbjct: 282 -------------KARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFS--LMQREGV 326

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            PN  +++S+L  C +LA+L+ G+ +H  ++R   D  + V S L+TMY +CG L  G+ 
Sbjct: 327 RPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKR 386

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VFD    +D+V WNS+I+ Y  HG+G KA+++F EM   G +P  I+F+ VL AC + G 
Sbjct: 387 VFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGK 446

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V+EG  +FESM+ ++ +    EHYACMVDLLGRA KL EA  +IE++ +E    VWG+LL
Sbjct: 447 VKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALL 506

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +CR H N++LAE A+K+L +LEP++AG Y+LL+++YA+   W +V  +++ + AR + K
Sbjct: 507 SACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSK 566

Query: 527 VPGRSRIEVKRKMYSFVSVDEF-HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
            PG S IEV  K++ F       HP+ E +   L  L A ++E GY P    V++D+D E
Sbjct: 567 SPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEE 626

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           +K   +  HSEK+AVA+GL+    G+ IR+ KNLR+C DCHS  K I++   +EI++RD 
Sbjct: 627 DKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDA 686

Query: 646 NRFHHFRNGVCSCGDYW 662
           NRFHHF++G+CSC D+W
Sbjct: 687 NRFHHFKDGLCSCRDFW 703



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 143/360 (39%), Gaps = 82/360 (22%)

Query: 122 INVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
           I+ ++    +D AR++FD  + +T+  WNA+        R  E  +L+ +M         
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM--------P 74

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
           +R T ++     V+      ++   +++   +        V   T+++  Y + G +  A
Sbjct: 75  ERNTISW--NGLVSGYVKNGMISEARKVFDKMPERN----VVSWTSMVRGYVQEGLIDEA 128

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP-----NSVTMVSV 296
             +F +M  KNVVSW+ M+     +G   EA  LF        D+ P      S  M+  
Sbjct: 129 ELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLF--------DMIPVKDVVASTNMIGG 180

Query: 297 LQACAALAALEQ-------------GKMIHGYILRRGLD------SILP-----VVSALV 332
           L +   L+   +               MI GY +   +D       ++P       +A++
Sbjct: 181 LCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAML 240

Query: 333 TMYARCGKL-----------------------------ELGQC--VFDHMDKRDVVSWNS 361
             Y R G++                             E+G+   VFD M ++D  +W++
Sbjct: 241 KGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSA 300

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           LI  Y   G+  +A+ +F  M   GV P+  S +S+L  C     ++ G+ +   + + H
Sbjct: 301 LIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSH 360



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 116/278 (41%), Gaps = 59/278 (21%)

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           R  ++    I    I  +AR G +  A  +F  +  K V SW+A++A Y  N    EA +
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           LF +M        P   T+                                   + LV+ 
Sbjct: 69  LFDKM--------PERNTI---------------------------------SWNGLVSG 87

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y + G +   + VFD M +R+VVSW S++  Y   G   +A  +F  M    V    +S+
Sbjct: 88  YVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNV----VSW 143

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
             +LG     G V+E + LF+ +  + ++  +      M+  L    +L EA +I +++ 
Sbjct: 144 TVMLGGLIEDGRVDEARRLFDMIPVKDVVAST-----NMIGGLCSEGRLSEAREIFDEM- 197

Query: 455 IEPGPKV--WGSLLGSCRIHCNVELAERASKRLFELEP 490
             P   V  W S++    ++  V++A    ++LFE+ P
Sbjct: 198 --PQRNVVAWTSMISGYAMNNKVDVA----RKLFEVMP 229



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L  C    SL     VHS L  + FD D ++ + LI +Y     +   + VFD+   + 
Sbjct: 336 ILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKD 395

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS-LLK 204
           I +WN++       G GE+ LE++  M  +G     D  T+  VL     S+CG++  +K
Sbjct: 396 IVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAA--PDEITFIGVL-----SACGYTGKVK 448

Query: 205 HGKEIHASVL-RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-A 261
            G EI  S+  ++  +        ++D+  R G +  A  +   M V+ + + W A++ A
Sbjct: 449 EGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSA 508

Query: 262 C 262
           C
Sbjct: 509 C 509



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 98/215 (45%), Gaps = 23/215 (10%)

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R    S   +    ++ +AR G+++  + +FD +  + V SWN++++ Y  +    +A +
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F +M       + IS+  ++      G++ E + +F+ M + +++      +  MV   
Sbjct: 69  LFDKM----PERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVV-----SWTSMVRGY 119

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            +   ++EA  +   +  E     W  +LG       V+ A    +RLF++ P       
Sbjct: 120 VQEGLIDEAELLFWRMP-EKNVVSWTVMLGGLIEDGRVDEA----RRLFDMIP------- 167

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGL-QKVPGRS 531
            + DV A+ +M   +    RL EAR +  ++P R+
Sbjct: 168 -VKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRN 201


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/610 (36%), Positives = 344/610 (56%), Gaps = 21/610 (3%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           + +  ++G+L  A +  +     T  TY  LL      + L    +    L D+    D 
Sbjct: 19  VAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADAR-RLFDSIPHPDT 77

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
                L++ +     +D AR VF     + +  WN +   L+  G  EE   ++R M   
Sbjct: 78  VSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP-- 135

Query: 176 GTGIRSDRFTYTYVLKACVASS---CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
              +R +  ++  ++ A   S        L ++  E   ++L           T ++  Y
Sbjct: 136 ---VR-NAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAIL----------WTAMVSGY 181

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
              G V  A   F  M V+N+VSW+A++A Y +N  A +AL +F+ M+ E   + PN+ T
Sbjct: 182 MDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMV-EDSIVQPNAST 240

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           + SVL  C+ L+AL  G+ +H + ++  L   + V ++L++MY +CG L     VFD M 
Sbjct: 241 LSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMS 300

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
            +D+V+WN++IS Y  HG G +AI++F++M   GV P  I+ ++VL AC H GL + G  
Sbjct: 301 TKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQ 360

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            FE+M++ + I P ++HY+CMVDLL RA  LE A  +I  +  EP P  +G+LL +CR++
Sbjct: 361 CFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVY 420

Query: 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
            N+E AE A+++L E +P NAG YV LA++YA A+ W +V RV+R ++   + K PG S 
Sbjct: 421 KNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSW 480

Query: 533 IEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVL 592
           +E+K   + F S D  HPQ   +H  L  L   MK  GYVP     L+D++   K ++++
Sbjct: 481 MEIKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLM 540

Query: 593 GHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652
            HSEKLA+AFGLI+TS G T+RI KNLR+C DCH+  K ISK  ++EI++RD  RFHHFR
Sbjct: 541 RHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFR 600

Query: 653 NGVCSCGDYW 662
            G CSCGDYW
Sbjct: 601 GGHCSCGDYW 610



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 134/295 (45%), Gaps = 19/295 (6%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N ++  L K G   +A  +  I P     ++  ++ +      +  A ++  +  +    
Sbjct: 112 NTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEK--- 168

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            D  L T +++ Y    +V  A   F     R +  WNA+        R ++ L +++ M
Sbjct: 169 TDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTM 228

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                 ++ +  T + VL  C       S L  G+++H   ++   +  V + T+L+ MY
Sbjct: 229 VEDSI-VQPNASTLSSVLLGC----SNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMY 283

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
            + G +  A  VF +M+ K++V+W+AMI+ YA++G   +A++LF +  M+   + P+ +T
Sbjct: 284 CKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEK--MKDEGVVPDWIT 341

Query: 293 MVSVLQACAALAALEQG-----KMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
           +++VL AC      + G      M   Y +   +D      S +V +  R G LE
Sbjct: 342 LLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDH----YSCMVDLLCRAGLLE 392


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/487 (41%), Positives = 304/487 (62%), Gaps = 6/487 (1%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G+  D+  +   L AC  +    + L+ GK IH+ VL  G      + T L++MY + GC
Sbjct: 5   GVLPDKICFVATLNACGGA---LADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGC 61

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC-PNSVTMVSV 296
           +  A  VF  +  K++VSW+A+++ Y+R  +  EAL+LFREM +   D   P+      +
Sbjct: 62  LDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFL 121

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVS-ALVTMYARCGKLELGQCVFDHMDKRD 355
           LQACA L+A  +G++ H  I   G DS   V+   ++ MY +CG L     VFD M +RD
Sbjct: 122 LQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERD 181

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
            V+W ++IS Y  HG+  +++ +F  M   G  P  +S + VL  CSHAGLVE+G   F 
Sbjct: 182 TVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFL 241

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
            + KE  + P  +HY CM+DLLGR+  LE A  +I  +  +     W   L +C++H + 
Sbjct: 242 DITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDT 301

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           E  +RA++++ ELEP  A  YV L+++YAAA  WD+V RV+  ++A GLQK PGRS IEV
Sbjct: 302 ERGKRAAEKVLELEPVPAA-YVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEV 360

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
             +++ F + D+ HP+  +++ LL +L+ +M+  GYVP TK+VL ++  E+KER++  HS
Sbjct: 361 NSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCFHS 420

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EKLA+AFGL++T  G ++RI KNLR+C DCH+  KF+S+ A +EI +RD  RFHHF++G 
Sbjct: 421 EKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQDGH 480

Query: 656 CSCGDYW 662
           CSCGDYW
Sbjct: 481 CSCGDYW 487



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 147/308 (47%), Gaps = 12/308 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +HS + + G + +  + T L+N+Y     +D+A  VF    R+ +  W AL  A +    
Sbjct: 33  IHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLGRKDLVSWTALMSAYSREDL 92

Query: 162 GEEVLELYRRMNGTG-TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
             E L+L+R M   G  G + DR  + ++L+AC       S    G+  H  +   GY+ 
Sbjct: 93  YREALQLFREMTLHGLDGTKPDRSYFAFLLQACAT----LSAAAEGRLAHRRIQECGYDS 148

Query: 221 IVHIMT-TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
              ++   +I+MY + G +  A  VF  M+ ++ V+W+ +I+ YA +G + E+L +F  M
Sbjct: 149 SDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRM 208

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARC 338
             +     P+ V+++ VL  C+    +EQG      I +  G++        ++ +  R 
Sbjct: 209 QQDGSK--PDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRS 266

Query: 339 GKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           G LE  + +   M  +   ++W   +++  VH    +  +  ++++   + P P ++VS+
Sbjct: 267 GDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDTERGKRAAEKVLE--LEPVPAAYVSL 324

Query: 398 LGACSHAG 405
               + AG
Sbjct: 325 SNIYAAAG 332


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/565 (39%), Positives = 342/565 (60%), Gaps = 20/565 (3%)

Query: 109 NGFDQDPFLVTKLINVYSHFDS-----VDDARHVFDKTRRRTIYVW-NALFRALTLAGRG 162
            G    P  VT+L+ + +   +     +  AR VFD+       VW N L R     G G
Sbjct: 56  GGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGG 115

Query: 163 EEVLE----LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
               E    ++ RM     G+  D +T+  +LKAC ++  G    + G++ H   ++ G 
Sbjct: 116 GGGAEEAARVFVRM--MEEGVAPDTYTFVSLLKACASARAG----EEGRQAHGVAVKAGA 169

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
               ++  TLI+MYA  G V  A  +F +M  + VVS++AMI    R+ +  EAL LFRE
Sbjct: 170 AEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFRE 229

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M  ++  L P SVT++SVL ACA L ALE G+ IH YI +  LDS++ V +AL+ MYA+C
Sbjct: 230 M--QAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKC 287

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G LE    VF  M+ RD  +W+ ++ +Y  HGYG +AI +F+EM   G+ P  ++F+ VL
Sbjct: 288 GSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVL 347

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSH+G+V EG   F+SMR E+ I   ++HY C+ DLL R+ +LE A K I++L I+P 
Sbjct: 348 YACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPT 406

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             +W +LL +C  H +V++ +R  +R+ EL+ ++ G+YV+ +++ A    W+E+  V++L
Sbjct: 407 AILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKL 466

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
           +  +G+ KVPG S IE+   ++ F + D  HP  ++   ++  +  ++K  GYVP T  V
Sbjct: 467 MSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHV 526

Query: 579 LY-DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
            + ++  EEK   +  HSEKLA++FGL+NT+ G T+RI KNLR+C DCHS  K +S   N
Sbjct: 527 FHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFN 586

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           + I++RD+NRFHHF +GVCSCGDYW
Sbjct: 587 RRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/534 (39%), Positives = 320/534 (59%), Gaps = 7/534 (1%)

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
           +S++ A  +F        + +  + R        E  L  Y  M     GI  D FTY  
Sbjct: 81  NSMNYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEM--MERGIEPDNFTYPC 138

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           +LKAC         ++ GK+IH  V + G    V +  +LI+MY R G +  +  VF ++
Sbjct: 139 LLKACTR----LKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKL 194

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             K+  SWS+M +     GM  E L LFREM  E+ +L      MVS L ACA   AL  
Sbjct: 195 EFKSAASWSSMFSACVGMGMWSECLMLFREMCRET-NLKAEESGMVSALSACANTGALNL 253

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           G  IHG++LR   +  + V ++LV MY +CG ++    +F  M+KR+ ++++++IS + +
Sbjct: 254 GMSIHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFAL 313

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           HG G  A+++F EMI  G+ P  + +VS+L ACSH+GLV+EG+ +F  M KE  + P+ E
Sbjct: 314 HGEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAE 373

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
           HY C+VDLLGRA  LEEA + I+ + IE    VW S L  CR+H N+EL + A++ L +L
Sbjct: 374 HYGCLVDLLGRAGLLEEALETIQSIPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKL 433

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
              N G+Y+L++++Y+ A MWD+V R +  +  +GL++ PG S ++VK K + FVS D  
Sbjct: 434 CSHNPGDYLLISNMYSQAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRS 493

Query: 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
           HPQ ++++ +L  +  ++K +GY P    +L ++D EEK+  + GHS+K+A+AF L+ T 
Sbjct: 494 HPQCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFALLYTP 553

Query: 609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            G  I+I +NLR+C DCH++TK IS    +EI+VRD NRFH F+ G CSC DYW
Sbjct: 554 PGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 607



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 147/295 (49%), Gaps = 11/295 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   TY  LL +CT   ++ +   +H H+   G + D F+   LIN+Y     ++ +  V
Sbjct: 131 PDNFTYPCLLKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTV 190

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+K   ++   W+++F A    G   E L L+R M    T ++++       L AC  + 
Sbjct: 191 FEKLEFKSAASWSSMFSACVGMGMWSECLMLFREM-CRETNLKAEESGMVSALSACANTG 249

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  G  IH  +LR+     + + T+L+DMY + GC+  A  +F +M  +N +++S
Sbjct: 250 A----LNLGMSIHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYS 305

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI+ +A +G    AL +F EMI E   L P+ V  VS+L AC+    +++G+ + G +L
Sbjct: 306 AMISGFALHGEGESALRMFSEMIKEG--LEPDHVVYVSLLNACSHSGLVKEGRRVFGEML 363

Query: 318 RRG-LDSILPVVSALVTMYARCGKLELGQCVFDH--MDKRDVVSWNSLISSYGVH 369
           + G ++        LV +  R G LE          +++ DVV W S +S   VH
Sbjct: 364 KEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEQNDVV-WRSFLSQCRVH 417


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/604 (35%), Positives = 344/604 (56%), Gaps = 37/604 (6%)

Query: 90  CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVW 149
           CT H +  +A  +H+ +  +G +Q   L   L++ Y   + + DA ++FD+  +R    W
Sbjct: 12  CTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSW 71

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
            ++  A   A    + L ++  M  T   ++ D F Y  +LKAC AS C   L   GK++
Sbjct: 72  ASILTAYNQAKLPNKTLSIFHYMFTTDR-LQPDHFVYATLLKAC-ASLCSLRL---GKQV 126

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           HA  +   +     + ++L+DMYA+ G    A  VF  + VK  VSW+AM++ YAR+G+ 
Sbjct: 127 HARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLK 186

Query: 270 FEALELFR-------------------------------EMIMESHDLCPNSVTMVSVLQ 298
            EA+ELF                                EM  E  D+  + + + SV+ 
Sbjct: 187 DEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIV-DPLVLSSVVG 245

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           ACA LA L  GK IHG ++  G +S L + +ALV MYA+C  +   + VF+ M  RDVVS
Sbjct: 246 ACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVS 305

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           W S+I     HG   +A+ ++ +M+   + P+ ++FV ++ ACSHAGLV +G+ LF++M 
Sbjct: 306 WTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMI 365

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
           +++ I PS++ + C +DLL R+  L EA  +I+ +  +P    W +LL +C+ H N E+ 
Sbjct: 366 EDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMG 425

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRK 538
            R + RL  L       YVLL++VYA A  W+++ RV++L+    +++ PG S I++ ++
Sbjct: 426 VRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKE 485

Query: 539 MYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKL 598
              F + +  HP  +++  LL  L AEM+++GY+P T  VL+D++ +EKER +  HSE+ 
Sbjct: 486 SQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERW 545

Query: 599 AVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSC 658
           AVA+GL+    G  IRI KNLR+C DCH+F K  S   +KEI+VRD  R+HHF++G CSC
Sbjct: 546 AVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSC 605

Query: 659 GDYW 662
            D+W
Sbjct: 606 NDFW 609



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 177/412 (42%), Gaps = 66/412 (16%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P    Y  LL +C    SL     VH+    + F  D  + + L+++Y+       AR 
Sbjct: 101 QPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARS 160

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR----------------------MNG 174
           VFD    +T   W A+      +G  +E +EL+ R                      ++G
Sbjct: 161 VFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDG 220

Query: 175 TGTGIRSDR----FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
               I   R         VL + V +    ++L  GK+IH  V+  GY   + I   L+D
Sbjct: 221 CYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVD 280

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MYA+   ++ A  VF++M  ++VVSW+++I   A++G A EAL+L+ +M++   ++ PN 
Sbjct: 281 MYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLA--EIKPNE 338

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           VT V ++ AC+    + +G+ +                 A++  Y     L+L  C  D 
Sbjct: 339 VTFVGLIYACSHAGLVSKGRKL---------------FKAMIEDYRISPSLQLFTCFLDL 383

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           + +                G+  +A  + K M +    P   ++ ++L AC H G  E G
Sbjct: 384 LSRS---------------GHLNEAEDLIKTMPH---KPDEPTWAALLSACKHHGNTEMG 425

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA---KIIEDLRIEPGP 459
             + + +   +M  PS   Y  + ++   A K E+ +   K++ D+ ++  P
Sbjct: 426 VRIADRLLSLNMHEPST--YVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKP 475



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 121/237 (51%), Gaps = 11/237 (4%)

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           +Y + LK C       +     K+IHA +++ G N    +  TL+D Y +   +  A ++
Sbjct: 4   SYLHRLKLCTKHQAPLN----AKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYL 59

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F +M  ++ VSW++++  Y +  +  + L +F  M      L P+     ++L+ACA+L 
Sbjct: 60  FDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDR-LQPDHFVYATLLKACASLC 118

Query: 305 ALEQGKMIHG-YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
           +L  GK +H  ++L   +D  + V S+LV MYA+CG   + + VFD +  +  VSW +++
Sbjct: 119 SLRLGKQVHARFVLSPFVDDDV-VKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAML 177

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           S Y   G   +A+++F       +     S+ +++     +G   +G  +F  MR+E
Sbjct: 178 SGYARSGLKDEAMELFLRTPVRNL----YSWTALISGLVQSGYCIDGCYMFIEMRRE 230


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/642 (36%), Positives = 353/642 (54%), Gaps = 72/642 (11%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS--HFDSVDDARHVFDKTR 142
           L LL+     SL     VH+     G  QD ++   L+  Y+  HF +++ A  VF+   
Sbjct: 32  LDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVP 91

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
              ++V+N + +         + +  Y +M       R ++FTY  + KAC A+      
Sbjct: 92  NPNVFVFNIIIKGCLQNNEPCKAICCYYKM--MIAHARPNKFTYPTLFKACTAAE----A 145

Query: 203 LKHGKEIHASVLRHGYNGIVHI-------------------------------MTTLIDM 231
            + G ++HA V++ G +G VHI                                  +ID 
Sbjct: 146 AEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDG 205

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM------------ 279
           Y + G V  A  +F  M  KNV SW+ M++  A+ GM  EA ELF EM            
Sbjct: 206 YLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMI 265

Query: 280 -----------------IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG-- 320
                            +M+  ++ P    + SVL ACA L AL+QG+ IH Y+      
Sbjct: 266 DGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNS 325

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
            D++L   +ALV MYA+CG+L++   VF+ M+K++V +WN++I   G+HG    AI++F 
Sbjct: 326 FDAVLG--TALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFF 383

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           +M      P+ I+ + VL AC+H+G+V+EG  +F SM + + I P +EHY C+VDLLGRA
Sbjct: 384 KMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRA 443

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
             L EA +++  + +EP   VWG+LLG+CR H +VEL ER  K L ELEP N+G Y LL+
Sbjct: 444 GLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLS 503

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YA A  WD+V  V++L++ RG++   G S I+    ++ F   D  HPQ + ++ +L 
Sbjct: 504 NIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLK 563

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
           N+   +K +G+ P T  VL+D++ EEKE  +  HSEKLA+AFGLINT  G TI + KNLR
Sbjct: 564 NMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLR 623

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +CEDCHS  K IS+  ++EI+VRD  R+HHF+ G CSC D+W
Sbjct: 624 MCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/597 (38%), Positives = 359/597 (60%), Gaps = 28/597 (4%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           L+  L +QG L Q   V         H Y   + +C H N      N  S LTD      
Sbjct: 119 LLPLLAQQGALAQGTSV---------HAY--CIRACLHPNR-----NSKSKLTDG----- 157

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             L T L+++Y+   S+  AR VFD    R    W+AL     L  R  +   L++ M  
Sbjct: 158 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 217

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
            G    S   +    L+AC +       L+ G+++HA + + G +  +    +L+ MYA+
Sbjct: 218 QGLCFLSPT-SIASALRACAS----LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 272

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A  +F +MAVK+ VS+SA+++ Y +NG A EA  +F++M  ++ ++ P++ TMV
Sbjct: 273 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKM--QACNVEPDAATMV 330

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           S++ AC+ LAAL+ G+  HG ++ RGL S   + +AL+ MYA+CG+++L + VF+ M  R
Sbjct: 331 SLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR 390

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           D+VSWN++I+ YG+HG G +A  +F EM   G  P  ++F+ +L ACSH+GLV EGK  F
Sbjct: 391 DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWF 450

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
             M   + + P +EHY CMVDLL R   L+EA + I+ + +    +VW +LLG+CR++ N
Sbjct: 451 HVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKN 510

Query: 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
           ++L ++ S+ + EL P   GN+VLL+++Y+AA  +DE   V+ + + +G +K PG S IE
Sbjct: 511 IDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 570

Query: 535 VKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGH 594
           +   +++FV  D+ HPQ  +++  L N+   +K+ GY P T  VL DL+ EEKE+ ++ H
Sbjct: 571 INGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICH 630

Query: 595 SEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
           SEKLA+A+G+++ S+ +TI +TKNLR+C DCH+  K IS    + I+VRD NRFHHF
Sbjct: 631 SEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 167/349 (47%), Gaps = 25/349 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSD---ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           P  +T+   L +C+   +L+D      +H H    G   D F+ T L+++Y     + DA
Sbjct: 8   PNNYTFPFALKACS---ALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDA 64

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
            H+F     R +  WNA+       G     +     M      +R +  T   +L    
Sbjct: 65  AHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLA 124

Query: 195 ASSCGFSLLKHGKEIHASVLRHGY-----------NGIVHIMTTLIDMYARFGCVMYAGF 243
                   L  G  +HA  +R              +G++ + T L+DMYA+ G ++YA  
Sbjct: 125 QQGA----LAQGTSVHAYCIRACLHPNRNSKSKLTDGVL-LGTALLDMYAKCGSLLYARR 179

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT-MVSVLQACAA 302
           VF  M  +N V+WSA+I  +       +A  LF+ M+ +   LC  S T + S L+ACA+
Sbjct: 180 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG--LCFLSPTSIASALRACAS 237

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           L  L  G+ +H  + + G+ + L   ++L++MYA+ G ++    +FD M  +D VS+++L
Sbjct: 238 LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSAL 297

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           +S Y  +G   +A  +FK+M    V P   + VS++ ACSH   ++ G+
Sbjct: 298 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 346



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 149/292 (51%), Gaps = 22/292 (7%)

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKH--GKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
           +  + +T+ + LKAC A      L  H  G+ IH   +  G    + + T L+DMY +  
Sbjct: 6   VAPNNYTFPFALKACSA------LADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCA 59

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
           C+  A  +F+ M  +++V+W+AM+A YA +GM   A+     M M+ H L PN+ T+V++
Sbjct: 60  CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 119

Query: 297 LQACAALAALEQGKMIHGYILRRGL-----------DSILPVVSALVTMYARCGKLELGQ 345
           L   A   AL QG  +H Y +R  L           D +L + +AL+ MYA+CG L   +
Sbjct: 120 LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVL-LGTALLDMYAKCGSLLYAR 178

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PSPISFVSVLGACSHA 404
            VFD M  R+ V+W++LI  + +     +A  +FK M+  G+   SP S  S L AC+  
Sbjct: 179 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASL 238

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
             +  G+ L   + K   +   +     ++ +  +A  +++A  + +++ ++
Sbjct: 239 DHLRMGEQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK 289



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 2/132 (1%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           M  H + PN+ T    L+AC+ALA    G+ IH + +  GL + L V +AL+ MY +C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ--IFKEMIYHGVSPSPISFVSVL 398
           L     +F  M  RD+V+WN++++ Y  HG    A+   +  +M  H + P+  + V++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 399 GACSHAGLVEEG 410
              +  G + +G
Sbjct: 121 PLLAQQGALAQG 132


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/565 (39%), Positives = 342/565 (60%), Gaps = 20/565 (3%)

Query: 109 NGFDQDPFLVTKLINVYSHFDS-----VDDARHVFDKTRRRTIYVW-NALFRALTLAGRG 162
            G    P  VT+L+ + +   +     +  AR VFD+       +W N L R     G G
Sbjct: 56  GGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVIWYNTLLRGYARGGGG 115

Query: 163 EEVLE----LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
               E    ++ RM     G+  D +T+  +LKAC ++  G    + G++ H   ++ G 
Sbjct: 116 GGGAEEAARVFVRM--MEEGVAPDTYTFVSLLKACASARAG----EEGRQAHGVAVKAGA 169

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
               ++  TLI+MYA  G V  A  +F +M  + VVS++AMI    R+ +  EAL LFRE
Sbjct: 170 AEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFRE 229

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M  ++  L P SVT++SVL ACA L ALE G+ IH YI +  LDS++ V +AL+ MYA+C
Sbjct: 230 M--QAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKC 287

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G LE    VF  M+ RD  +W+ ++ +Y  HGYG +AI +F+EM   G+ P  ++F+ VL
Sbjct: 288 GSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVL 347

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSH+G+V EG   F+SMR E+ I   ++HY C+ DLL R+ +LE A K I++L I+P 
Sbjct: 348 YACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPT 406

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             +W +LL +C  H +V++ +R  +R+ EL+ ++ G+YV+ +++ A    W+E+  V++L
Sbjct: 407 AILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKL 466

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
           +  +G+ KVPG S IE+   ++ F + D  HP  ++   ++  +  ++K  GYVP T  V
Sbjct: 467 MSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHV 526

Query: 579 LY-DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
            + ++  EEK   +  HSEKLA++FGL+NT+ G T+RI KNLR+C DCHS  K +S   N
Sbjct: 527 FHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFN 586

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           + I++RD+NRFHHF +GVCSCGDYW
Sbjct: 587 RRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/572 (37%), Positives = 338/572 (59%), Gaps = 10/572 (1%)

Query: 92  HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNA 151
           H + L++    H++        D  +   L+++Y    S++ +  VF+    R    W  
Sbjct: 379 HLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTT 438

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           +      + R  E LE+   +   G  I  D      +L+ C    CG   +   K++H 
Sbjct: 439 ILACFAQSSRHSEALEMILELQKEG--IMVDSMMIGSILETC----CGLKSISLLKQVHC 492

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
             +R+G   ++ +   LID+Y   G   ++  +F ++  K++VSW++MI C   NG    
Sbjct: 493 YAIRNGLLDLI-LENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNG 551

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           A+ LF EM  +  ++ P+SV +VS+L A A L++L +GK +HG+++RR      PVVS+L
Sbjct: 552 AVFLFTEM--QKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSL 609

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           V MY+ CG +     VF+    +DVV W ++I++ G+HG+G +AI +FK M+  G++P  
Sbjct: 610 VDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDH 669

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           +SF+++L ACSH+ LVEEGK   + M  ++ ++P  EHYAC+VD+LGR+ + EEA + I+
Sbjct: 670 VSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIK 729

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
            + ++P   VW +LLG+CR+H N  LA  A+ +L ELEP N GNY+L+++V+A    W+ 
Sbjct: 730 TMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNN 789

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM-KEKG 570
            K  +  +  RGL+K P  S IE+   +++F S D  H   E +H  L  ++  + +E G
Sbjct: 790 AKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGG 849

Query: 571 YVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTK 630
           YV  T+ VL+D   EEK  ++  HSE++A+AFGLI+T  G  IRI KNLR+C DCH FTK
Sbjct: 850 YVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTK 909

Query: 631 FISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            +SK   ++I+VRD NRFHHF  G CSC D+W
Sbjct: 910 LVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 129/406 (31%), Positives = 206/406 (50%), Gaps = 14/406 (3%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF---D 112
           ++ LCK+G+LRQAL  L+    P +  Y  +L       + ++   VH+H    G    D
Sbjct: 33  LKRLCKEGDLRQALRQLTTRAPPAREHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNED 92

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            D FL TKL+ +Y     VDDAR +F+    RT++ WNAL  A   +G   E + +Y  M
Sbjct: 93  DDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAM 152

Query: 173 NGTGT-GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
             +   G   D  T   VLKAC A   G    + G E+H   ++ G +    +   LI M
Sbjct: 153 RASAAPGSAPDGCTLASVLKACGAEGDG----RCGGEVHGLAVKVGLDKSTLVANALIGM 208

Query: 232 YARFGCVMYAGFVFS--QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
           YA+ G +  A  VF   Q   ++V SW+++++   +NG   EAL LFR   M+S     N
Sbjct: 209 YAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRG--MQSAGFPMN 266

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
           S T V+VLQ CA L  L  G+ +H  +L+ G +  +   +AL+ MYA+ G+++    VF 
Sbjct: 267 SYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQ-CNALLVMYAKYGRVDSALRVFG 325

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
            + ++D +SWNS++S Y  + +  +AI  F EM+ HG  P     VS+  A  H   +  
Sbjct: 326 QIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNN 385

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
           G+  F +   +  +   ++    ++D+  +   +E +AK+ E + I
Sbjct: 386 GRE-FHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGI 430



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 199/427 (46%), Gaps = 23/427 (5%)

Query: 53  NELIQSLCKQGNLRQALDVL-----SIEPN--PTQHTYELLLLSCTHHNSLSDALNVHSH 105
           N L+ +    G+  +A+ V      S  P   P   T   +L +C           VH  
Sbjct: 130 NALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGL 189

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR--RTIYVWNALFRALTLAGRGE 163
               G D+   +   LI +Y+    +D A  VF+  ++  R +  WN++       GR  
Sbjct: 190 AVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTL 249

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           E L L+R M   G  + S  +T   VL+ C        LL  G+E+HA++L+ G    + 
Sbjct: 250 EALALFRGMQSAGFPMNS--YTSVAVLQVCAE----LGLLSLGRELHAALLKCGSELNIQ 303

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
               L+ MYA++G V  A  VF Q+A K+ +SW++M++CY +N    EA++ F EM+   
Sbjct: 304 CNALLV-MYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEML--Q 360

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
           H   P+   +VS+  A   L+ L  G+  H Y +++ L + L V + L+ MY +CG +E 
Sbjct: 361 HGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIEC 420

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              VF+ M  RD +SW ++++ +       +A+++  E+   G+    +   S+L  C  
Sbjct: 421 SAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCG 480

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV-W 462
              +   K +     +  ++   +E+   ++D+ G   + + +  + +  R+E    V W
Sbjct: 481 LKSISLLKQVHCYAIRNGLLDLILENR--LIDIYGECGEFDHSLNLFQ--RVEKKDIVSW 536

Query: 463 GSLLGSC 469
            S++  C
Sbjct: 537 TSMINCC 543



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 49/219 (22%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L++    +SL+    VH  L    F  +  +V+ L+++YS   S++ A  VF++ + + 
Sbjct: 574 ILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKD 633

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           + +W A+  A  + G G++ ++L++RM    TG+  D  ++  +L AC  S     L++ 
Sbjct: 634 VVLWTAMINATGMHGHGKQAIDLFKRM--LQTGLTPDHVSFLALLYACSHS----KLVEE 687

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC--- 262
           GK               H +  ++  Y                    +  W    AC   
Sbjct: 688 GK---------------HYLDIMVSKY-------------------RLKPWQEHYACVVD 713

Query: 263 -YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
              R+G   EA E  + M M+     P S    ++L AC
Sbjct: 714 ILGRSGQTEEAYEFIKTMPMD-----PKSAVWCALLGAC 747


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/643 (36%), Positives = 354/643 (55%), Gaps = 76/643 (11%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLI--NVYSHFDSVDDARHVFDKTRR 143
           LL  C+   SL     +H+ +   G   DP +  KL+     +  D++  A  +F     
Sbjct: 8   LLSKCS---SLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPN 64

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
              ++ N L R+L+L+      L  + ++    T +  D FT+ + LKA VA+S     L
Sbjct: 65  PDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPT-LSPDSFTFAFALKA-VANS---RHL 119

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYAR----------------------------- 234
           + G ++H+   RHG++  + + TTLI MYA                              
Sbjct: 120 RPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAA 179

Query: 235 ------------FGCV----------MYAGF-----------VFSQMAVKNVVSWSAMIA 261
                       FGC+          M AG+           VF +M +++ VSWS MI 
Sbjct: 180 FRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIV 239

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            +A NG   EA   FRE++ E  ++  N V++  VL ACA   A E GK++HG++ + G 
Sbjct: 240 GFAHNGCFDEAFGFFRELLRE--EIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGF 297

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFK 380
             +  V +AL+  Y++CG + + + VF +M   R +VSW S+I+   +HG G +AIQ+F 
Sbjct: 298 LYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFH 357

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           EM   GV P  I+F+S+L ACSH+GLVEEG  LF  M+  + I P++EHY CMVDL GRA
Sbjct: 358 EMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRA 417

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            +L++A + I ++ + P   +W +LLG+C IH N+E+AE    RL E++P N+G++VLL+
Sbjct: 418 ARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLS 477

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           +VYA A  W +V  ++R +    ++K PG S IE+ + +Y FV+ ++ +   E+ H  L 
Sbjct: 478 NVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLR 537

Query: 561 NLSAEMK-EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
            +   ++ E GY PQ + VL+D++ EEKE  V  HSEKLA AFG+    KG  +RI KNL
Sbjct: 538 EIMLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNL 597

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCH+  K ISK    EI+VRD +RFH F++G CSC DYW
Sbjct: 598 RVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/619 (36%), Positives = 337/619 (54%), Gaps = 59/619 (9%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI+     G  R+A+     +L +   P  +T+  +L  CT   +  + + VH  +  
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G ++D F+   LI+ Y+    +D    VF+    R +  W +L        R +E + L
Sbjct: 160 MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSL 219

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M                                              N +  ++  L
Sbjct: 220 FFEM---------------------------------------------LNKV--MVNAL 232

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +DMY + G +  A  +F +   +N+V ++ +++ YAR G+A EAL +  EM+ +     P
Sbjct: 233 VDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPR--P 290

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGY-----ILRRGLDSILPVVSALVTMYARCGKLEL 343
           + VTM+S + A A L  L  GK+ HGY     I + G+   + + +ALV M+ARCG  + 
Sbjct: 291 DRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQS 350

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              VF+ M +RDV +W + I +  + G G  A  +F +M+  GV P  + FV VL ACSH
Sbjct: 351 AMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSH 410

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
            G VE+G  +F S+ ++H I P +EHY CMVDLLGRA  L EA  +I+ + +EP   VWG
Sbjct: 411 GGQVEQGLHIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWG 469

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           SLL +CR+H NVE+A  A++R+ EL P  AG +VLL+++YA+A  W +V RV+  L  +G
Sbjct: 470 SLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKG 529

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
           ++KVPG S ++V   ++ F S DE HP+   +  +L  ++    + G++P    VL D+D
Sbjct: 530 VRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVD 589

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            +EKE ++  HSEKLA+AFGLI T +   IR+ KNLR+C DCHSF K  S   N+EI+VR
Sbjct: 590 EQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVR 649

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D NRFH FR G+CSC DYW
Sbjct: 650 DNNRFHFFRQGLCSCCDYW 668



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 179/398 (44%), Gaps = 66/398 (16%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF---DSVDDARHVF-----DKTRRRTI 146
           +L+    +H  +T NG DQ P  +TKL+N  +     +S+D AR  F     D      +
Sbjct: 37  TLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDAL 96

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC--VASSCGFSLLK 204
           ++ N+L R  + AG G E + LY RM     G+  + +T+ +VL  C  +A+ C      
Sbjct: 97  FMLNSLIRGYSSAGLGREAILLYVRM--LVLGVTPNHYTFPFVLSGCTKIAAFC------ 148

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
            G ++H SV++ G    V I   LI  YA  G + +   VF  M+ +NVVSW+++I  YA
Sbjct: 149 EGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYA 208

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           R     EA+ LF EM+        N V                                 
Sbjct: 209 RGDRPKEAVSLFFEML--------NKV--------------------------------- 227

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
             +V+ALV MY +CG ++  + +FD    R++V +N+++S+Y   G   +A+ I  EM+ 
Sbjct: 228 --MVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQ 285

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKML----FESMRKEHMIRPSVEHYACMVDLLGRA 440
            G  P  ++ +S + A +    +  GK+       +  +++ I   +     +VD+  R 
Sbjct: 286 QGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARC 345

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
              + A ++   +  E     W + +G+  +  N E A
Sbjct: 346 GDPQSAMQVFNKM-TERDVSAWTAAIGTMAMEGNGEGA 382


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/487 (41%), Positives = 304/487 (62%), Gaps = 6/487 (1%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G+  D+  +   L AC  +    + L+ GK IH+ VL  G      + T L++MY + GC
Sbjct: 5   GVLPDKICFVATLNACGGA---LADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGC 61

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC-PNSVTMVSV 296
           +  A  VF  +  K++VSW+A+++ Y+R  +  EAL+LFREM +   D   P+      +
Sbjct: 62  LDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFL 121

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVS-ALVTMYARCGKLELGQCVFDHMDKRD 355
           LQACA L+A  +G++ H  I   G DS   V+   ++ MY +CG L     VFD M +RD
Sbjct: 122 LQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERD 181

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
            V+W ++IS Y  HG+  +++ +F  M   G  P  +S + VL  CSHAGLVE+G   F 
Sbjct: 182 TVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFL 241

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
            + KE  + P  +HY CM+DLLGR+  LE A  +I  +  +     W   L +C++H + 
Sbjct: 242 DITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDT 301

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           E  +RA++++ ELEP  A  YV L+++YAAA  WD+V RV+  ++A GLQK PGRS IEV
Sbjct: 302 ERGKRAAEKVLELEPVPAA-YVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEV 360

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
             +++ F + D+ HP+  +++ LL +L+ +M+  GYVP TK+VL ++  E+KER++  HS
Sbjct: 361 NSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCFHS 420

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EKLA+AFGL++T  G ++RI KNLR+C DCH+  KF+S+ A +EI +RD  RFHHF++G 
Sbjct: 421 EKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQDGH 480

Query: 656 CSCGDYW 662
           CSCGDYW
Sbjct: 481 CSCGDYW 487



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 147/308 (47%), Gaps = 12/308 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +HS + + G + +  + T L+N+Y     +D+A  VF    R+ +  W AL  A +    
Sbjct: 33  IHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLERKDLVSWTALMSAYSREDL 92

Query: 162 GEEVLELYRRMNGTG-TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
             E L+L+R M   G  G + DR  + ++L+AC       S    G+  H  +   GY+ 
Sbjct: 93  YREALQLFREMTLHGLDGTKPDRSYFAFLLQACAT----LSAAAEGRLAHRRIQECGYDS 148

Query: 221 IVHIMT-TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
              ++   +I+MY + G +  A  VF  M+ ++ V+W+ +I+ YA +G + E+L +F  M
Sbjct: 149 SDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRM 208

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARC 338
             +     P+ V+++ VL  C+    +EQG      I +  G++        ++ +  R 
Sbjct: 209 QQDGSK--PDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRS 266

Query: 339 GKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           G LE  + +   M  +   ++W   +++  VH    +  +  ++++   + P P ++VS+
Sbjct: 267 GDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDTERGKRAAEKVLE--LEPVPAAYVSL 324

Query: 398 LGACSHAG 405
               + AG
Sbjct: 325 SNIYAAAG 332


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/534 (39%), Positives = 319/534 (59%), Gaps = 7/534 (1%)

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
           +S++ A  +F        + +N + R        EE L  Y  M   G     D FTY  
Sbjct: 80  NSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGN--EPDNFTYPC 137

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           +LKAC         ++ GK+IH  V + G    V +  +LI+MY R G +  +  VF ++
Sbjct: 138 LLKACTR----LKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKL 193

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             K   SWS+M++  A  GM  E L LFR M  E+ +L      MVS L ACA   AL  
Sbjct: 194 ESKTAASWSSMVSARAGMGMWSECLLLFRGMCSET-NLKAEESGMVSALLACANTGALNL 252

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           G  IHG++LR   +  + V ++LV MY +CG L+    +F  M+KR+ ++++++IS   +
Sbjct: 253 GMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLAL 312

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           HG G  A+++F +MI  G+ P  + +VSVL ACSH+GLV+EG+ +F  M KE  + P+ E
Sbjct: 313 HGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAE 372

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
           HY C+VDLLGRA  LEEA + I+ + IE    +W + L  CR+  N+EL + A++ L +L
Sbjct: 373 HYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKL 432

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
              N G+Y+L++++Y+   MWD+V R +  +  +GL++ PG S +E+K K + FVS D  
Sbjct: 433 SSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRS 492

Query: 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
           HP+ ++++ +L  +  ++K +GY P    +L ++D EEK+  + GHS+K+A+AFGL+ T 
Sbjct: 493 HPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTP 552

Query: 609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            G  I+I +NLR+C DCH++TK IS    +EI+VRD NRFH F+ G CSC DYW
Sbjct: 553 PGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 142/290 (48%), Gaps = 11/290 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   TY  LL +CT   S+ +   +H  +   G + D F+   LIN+Y     ++ +  V
Sbjct: 130 PDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAV 189

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+K   +T   W+++  A    G   E L L+R M  + T ++++       L AC  + 
Sbjct: 190 FEKLESKTAASWSSMVSARAGMGMWSECLLLFRGM-CSETNLKAEESGMVSALLACANTG 248

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  G  IH  +LR+     + + T+L+DMY + GC+  A  +F +M  +N +++S
Sbjct: 249 A----LNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYS 304

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI+  A +G    AL +F +MI E   L P+ V  VSVL AC+    +++G+ +   +L
Sbjct: 305 AMISGLALHGEGESALRMFSKMIKEG--LEPDHVVYVSVLNACSHSGLVKEGRRVFAEML 362

Query: 318 RRG-LDSILPVVSALVTMYARCGKLELGQCVFDH--MDKRDVVSWNSLIS 364
           + G ++        LV +  R G LE          ++K DV+ W + +S
Sbjct: 363 KEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVI-WRTFLS 411


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/618 (36%), Positives = 354/618 (57%), Gaps = 18/618 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS--------IEPNPTQHTYELLLLSCTHHNSLSDALNVHS 104
           N +I +  ++G + +  D+L         +E N    T   LL +C   + L     +H 
Sbjct: 383 NSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEV--TILNLLPACLEESELLSLRALHG 440

Query: 105 HLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
           +   + F     +    I  Y+   S+  A HVF     +++  WNA+       G   +
Sbjct: 441 YSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIK 500

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
            L+ Y  M  T  GI  D F+   +L AC        LL++GKEIH  VLR+G      +
Sbjct: 501 ALDFYFEM--TRLGILPDDFSIVSLLLACGR----LGLLQYGKEIHGFVLRNGLEMNSFV 554

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
             +L+ +Y       Y    F +M  KN V W+AM++ Y++N +  EAL LFR+M+  S 
Sbjct: 555 AVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQML--SD 612

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
            L P+ + + S+L AC+ L+AL  GK +H + L+  L     V  +L+ MYA+ G L   
Sbjct: 613 GLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHS 672

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           Q +F+ ++ ++V SWN +I+ +GVHG G KA+++F++M      P   +F+ VL AC HA
Sbjct: 673 QRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHA 732

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           GLV EG      M+  + + P +EHYAC++D+LGRA +L EA   I ++  EP  K+W S
Sbjct: 733 GLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSS 792

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL S   + ++E+ E+ +++L  LE   A +Y+LL+++YA A  WD V+ V++ ++   L
Sbjct: 793 LLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSL 852

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           QK  G S IE++ K+YSF++ +  +P  +++  +   L  ++ E GY P    VL++L+ 
Sbjct: 853 QKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEE 912

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
            EK +I+ GHSEK+A+ FG +NT +G T+RI+KNLR+C DCH+  K+ISK A +EI++RD
Sbjct: 913 VEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRD 972

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHF+ G+CSCGDYW
Sbjct: 973 NKRFHHFKKGICSCGDYW 990



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 173/344 (50%), Gaps = 5/344 (1%)

Query: 69  LDVLSI-EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH 127
           L+++S+ E  P   T+  L+ +CT    +    +VH      G   D F+   +I +Y  
Sbjct: 198 LELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGK 257

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
              +D+A  +FDK   + +  WN+L R  +  G   E    +R +  +G G+  D  T  
Sbjct: 258 CGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMV 317

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
            +L  C     G   +  G  IH   ++ G    + +   LIDMY++ GC+  A  +F +
Sbjct: 318 TLLPVC----SGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRK 373

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           +  K+VVSW++MI  Y+R G  FE  +L R+M ME   +  N VT++++L AC   + L 
Sbjct: 374 IENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELL 433

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
             + +HGY LR        + +A +  YA+CG L   + VF  M+ + V SWN++I  + 
Sbjct: 434 SLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHA 493

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
            +G   KA+  + EM   G+ P   S VS+L AC   GL++ GK
Sbjct: 494 QNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGK 537



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 198/415 (47%), Gaps = 42/415 (10%)

Query: 37  SLNSSTTPTS----LSSRNKN---------------ELIQSLCKQGNLRQALDVL----- 72
           SL S++TP S    +S+R ++               E I  LC+ G+L  ALD L     
Sbjct: 37  SLLSTSTPKSSYFFVSARTQSHQSRSVNPVSQLSLLEEISKLCEAGDLNGALDFLQRAWK 96

Query: 73  ---SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL-TDNGFDQDPFLVTKLINVYSHF 128
                +    +    +LL  C  + ++     +   L   + F  D  L T+LI +YS  
Sbjct: 97  NNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSIC 156

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
               ++R VFD+   + ++ WNAL          +E +  +  +    T  + D FT+  
Sbjct: 157 GYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISV-TEFQPDNFTFPC 215

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           ++KAC    C   L   GK +H   ++ G    + +   +I +Y + G +  A  +F +M
Sbjct: 216 LIKACTG-KCDIHL---GKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKM 271

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             +N++SW+++I  ++ NG   EA   FR ++     L P+  TMV++L  C+    ++ 
Sbjct: 272 PEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDV 331

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           G +IHG  ++ GL   L V +AL+ MY++CG L     +F  ++ + VVSWNS+I +Y  
Sbjct: 332 GMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSR 391

Query: 369 HGYGGKAIQIFKEMIYHG--VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
            G+  +   + ++M      +  + ++ +++L AC     +EE ++L  S+R  H
Sbjct: 392 EGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC-----LEESELL--SLRALH 439



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 138/256 (53%), Gaps = 11/256 (4%)

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
           ++G   + T LI MY+  G  + +  VF ++  KN+  W+A+++ Y RN +  EA+  F 
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
           E+I  + +  P++ T   +++AC     +  GK +HG  ++ GL   L V +A++ +Y +
Sbjct: 199 ELISVT-EFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGK 257

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY--HGVSPSPISFV 395
           CG L+    +FD M +++++SWNSLI  +  +G+  +A + F+ ++    G+ P   + V
Sbjct: 258 CGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMV 317

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDL 453
           ++L  CS  G V+ G ++     K  ++    E   C  ++D+  +   L EAA +    
Sbjct: 318 TLLPVCSGEGNVDVGMVIHGMAVKLGLVH---ELMVCNALIDMYSKCGCLSEAAILFR-- 372

Query: 454 RIEPGPKV-WGSLLGS 468
           +IE    V W S++G+
Sbjct: 373 KIENKSVVSWNSMIGA 388


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/576 (39%), Positives = 338/576 (58%), Gaps = 17/576 (2%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDK-TRRRTIYVWN 150
           NS+     +HSH+  NG    P +   L+     S   S+  A+ +FD      +   WN
Sbjct: 16  NSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSDWN 75

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
            L R  + +      +  Y RM  +    R D FT+ + LK+C         +    EIH
Sbjct: 76  YLIRGFSNSSSPLNSILFYNRMLLSSVS-RPDLFTFNFALKSCER----IKSIPKCLEIH 130

Query: 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAF 270
            SV+R G+     + T+L+  Y+  G V  A  VF +M V+++VSW+ MI C++  G+  
Sbjct: 131 GSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHN 190

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
           +AL +++ M  E   +C +S T+V++L +CA ++AL  G M+H        +S + V +A
Sbjct: 191 QALSMYKRMGNEG--VCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNA 248

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           L+ MYA+CG LE    VF+ M KRDV++WNS+I  YGVHG+G +AI  F++M+  GV P+
Sbjct: 249 LIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPN 308

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
            I+F+ +L  CSH GLV+EG   FE M  +  + P+V+HY CMVDL GRA +LE + ++I
Sbjct: 309 AITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMI 368

Query: 451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWD 510
                   P +W +LLGSC+IH N+EL E A K+L +LE  NAG+YVL+  +Y+AA+   
Sbjct: 369 YASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQ 428

Query: 511 EVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKG 570
               +++L+ +  LQ VPG S IE+  +++ FV  D+ HP+   +++ L  +       G
Sbjct: 429 AFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAG 488

Query: 571 YVPQ----TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
           Y P+    T   L D      +     HSEKLA+A+GL+ T+ G T+RITKNLR+C DCH
Sbjct: 489 YKPEDSNRTAPTLSDRCLGSADT---SHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCH 545

Query: 627 SFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           SFTK++SK  N+EI+VRD  RFHHF +G+CSC DYW
Sbjct: 546 SFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 140/303 (46%), Gaps = 14/303 (4%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           +LS    P   T+   L SC    S+   L +H  +  +GF  D  + T L+  YS   S
Sbjct: 98  LLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGS 157

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           V+ A  VFD+   R +  WN +    +  G   + L +Y+RM     G+  D +T   +L
Sbjct: 158 VEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMG--NEGVCGDSYTLVALL 215

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
            +C       S L  G  +H           V +   LIDMYA+ G +  A  VF+ M  
Sbjct: 216 SSCAH----VSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRK 271

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           ++V++W++MI  Y  +G   EA+  FR+M+     + PN++T + +L  C+    +++G 
Sbjct: 272 RDVLTWNSMIIGYGVHGHGVEAISFFRKMVASG--VRPNAITFLGLLLGCSHQGLVKEG- 328

Query: 311 MIHGYILRRGLDSILPVV---SALVTMYARCGKLELG-QCVFDHMDKRDVVSWNSLISSY 366
            +  + +      + P V     +V +Y R G+LE   + ++      D V W +L+ S 
Sbjct: 329 -VEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSC 387

Query: 367 GVH 369
            +H
Sbjct: 388 KIH 390


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/532 (39%), Positives = 320/532 (60%), Gaps = 6/532 (1%)

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           V+D   +F +   R +  W ++   L   GR EE L L+R+M G G  ++    TY  V+
Sbjct: 135 VEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVI 194

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
            AC  +S     L  G +IHA V + GY+   +I   LI  YA    +  +  VF     
Sbjct: 195 TACANASA----LYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLH 250

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
            NVV W+A++  Y  N    +AL++F EM+ E   + PN  +  S L +C  L AL+ G+
Sbjct: 251 MNVVIWTALVTGYGLNCKHEDALKVFGEMMREG--VLPNQSSFTSALNSCCGLEALDWGR 308

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            IH   ++ GL++ + V ++L+ MY RCG L  G  +F  + K+++VSWNS+I     HG
Sbjct: 309 EIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHG 368

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
            G  A+  F +M+   V P  I+F  +L ACSH+G+ ++G+ LF+   +       ++HY
Sbjct: 369 CGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHY 428

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
           ACMVD+LGR+ KLEEA ++I ++ ++    VW  LL +C +H  +E+AERA+K + +LEP
Sbjct: 429 ACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEP 488

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
             +  YVLL+++YA+A  W +V R++R ++ RG+ K PGRS I +K     F+S D  HP
Sbjct: 489 HCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHP 548

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
             ++++  L  L  ++KE GYVP  +  L+D++ E+KE ++  HSE+LA+ FGLI+T +G
Sbjct: 549 SSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEG 608

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            TI + KNLR+C DCHS  K I+K   ++I+VRD  RFHHF +G CSCGDYW
Sbjct: 609 STITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 158/323 (48%), Gaps = 16/323 (4%)

Query: 55  LIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           +I  L + G   +AL +        +E  PT  TY  ++ +C + ++L   + +H+H+  
Sbjct: 156 MIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFK 215

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+  D ++   LI  Y++   ++D+  VF       + +W AL     L  + E+ L++
Sbjct: 216 LGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKV 275

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M     G+  ++ ++T  L +C    CG   L  G+EIH + ++ G    V +  +L
Sbjct: 276 FGEM--MREGVLPNQSSFTSALNSC----CGLEALDWGREIHTAAVKLGLETDVFVGNSL 329

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MY R G +     +F +++ KN+VSW+++I   A++G    AL  F +M+    +  P
Sbjct: 330 IVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVE--P 387

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCV 347
           + +T   +L AC+     ++G+ +  Y    +  +  L   + +V +  R GKLE  + +
Sbjct: 388 DEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEEL 447

Query: 348 FDHMD-KRDVVSWNSLISSYGVH 369
             +M  K + + W  L+S+  +H
Sbjct: 448 IRNMPVKANSMVWLVLLSACTMH 470



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 144/312 (46%), Gaps = 45/312 (14%)

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           +D+AR VFDK     +Y++  +        R +  L+L+  M         D  ++  ++
Sbjct: 11  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMP------VKDVVSWNSMI 64

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV------------ 238
           K C   +     L   +++   +        V   TT+I+ + +FG +            
Sbjct: 65  KGCFDCA----DLTMARKLFDEMPERS----VVSWTTMINGFLQFGKIEVAEGLFYKMPF 116

Query: 239 --------MYAGF-----------VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
                   M  G+           +F +M  +NV+SW++MI    ++G + EAL LFR+M
Sbjct: 117 RDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQM 176

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           +    ++ P S T   V+ ACA  +AL QG  IH ++ + G      + +AL+T YA C 
Sbjct: 177 MGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCK 236

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           ++E    VF      +VV W +L++ YG++     A+++F EM+  GV P+  SF S L 
Sbjct: 237 QMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALN 296

Query: 400 ACSHAGLVEEGK 411
           +C     ++ G+
Sbjct: 297 SCCGLEALDWGR 308



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 127/267 (47%), Gaps = 30/267 (11%)

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI-ACYARNGMAFEALELFREMI 280
           V++ T +I  YAR     +A  +F +M VK+VVSW++MI  C+    +   A +LF EM 
Sbjct: 26  VYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTM-ARKLFDEMP 84

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV--VSALVTM-YAR 337
             S       V+  +++        +E         +  GL   +P   ++A  +M Y  
Sbjct: 85  ERS------VVSWTTMINGFLQFGKIE---------VAEGLFYKMPFRDIAAWNSMIYGY 129

Query: 338 C--GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS-- 393
           C  G++E G  +F  M  R+V+SW S+I     HG   +A+ +F++M+  GV   P S  
Sbjct: 130 CCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSST 189

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY--ACMVDLLGRANKLEEAAKIIE 451
           +  V+ AC++A  + +G  +   + K   +  S + Y  A ++       ++E++ ++  
Sbjct: 190 YCCVITACANASALYQGVQIHAHVFK---LGYSFDAYISAALITFYANCKQMEDSLRVFH 246

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELA 478
             ++     +W +L+    ++C  E A
Sbjct: 247 G-KLHMNVVIWTALVTGYGLNCKHEDA 272


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/532 (39%), Positives = 320/532 (60%), Gaps = 6/532 (1%)

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           V+D   +F +   R +  W ++   L   GR EE L L+R+M G G  ++    TY  V+
Sbjct: 151 VEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVI 210

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
            AC  +S     L  G +IHA V + GY+   +I   LI  YA    +  +  VF     
Sbjct: 211 TACANASA----LYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLH 266

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
            NVV W+A++  Y  N    +AL++F EM+ E   + PN  +  S L +C  L AL+ G+
Sbjct: 267 MNVVIWTALVTGYGLNCKHEDALKVFGEMMREG--VLPNQSSFTSALNSCCGLEALDWGR 324

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            IH   ++ GL++ + V ++L+ MY RCG L  G  +F  + K+++VSWNS+I     HG
Sbjct: 325 EIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHG 384

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
            G  A+  F +M+   V P  I+F  +L ACSH+G+ ++G+ LF+   +       ++HY
Sbjct: 385 CGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHY 444

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
           ACMVD+LGR+ KLEEA ++I ++ ++    VW  LL +C +H  +E+AERA+K + +LEP
Sbjct: 445 ACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEP 504

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
             +  YVLL+++YA+A  W +V R++R ++ RG+ K PGRS I +K     F+S D  HP
Sbjct: 505 HCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHP 564

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
             ++++  L  L  ++KE GYVP  +  L+D++ E+KE ++  HSE+LA+ FGLI+T +G
Sbjct: 565 SSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEG 624

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            TI + KNLR+C DCHS  K I+K   ++I+VRD  RFHHF +G CSCGDYW
Sbjct: 625 STITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 158/323 (48%), Gaps = 16/323 (4%)

Query: 55  LIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           +I  L + G   +AL +        +E  PT  TY  ++ +C + ++L   + +H+H+  
Sbjct: 172 MIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFK 231

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+  D ++   LI  Y++   ++D+  VF       + +W AL     L  + E+ L++
Sbjct: 232 LGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKV 291

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M     G+  ++ ++T  L +C    CG   L  G+EIH + ++ G    V +  +L
Sbjct: 292 FGEM--MREGVLPNQSSFTSALNSC----CGLEALDWGREIHTAAVKLGLETDVFVGNSL 345

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MY R G +     +F +++ KN+VSW+++I   A++G    AL  F +M+    +  P
Sbjct: 346 IVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVE--P 403

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCV 347
           + +T   +L AC+     ++G+ +  Y    +  +  L   + +V +  R GKLE  + +
Sbjct: 404 DEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEEL 463

Query: 348 FDHMD-KRDVVSWNSLISSYGVH 369
             +M  K + + W  L+S+  +H
Sbjct: 464 IRNMPVKANSMVWLVLLSACTMH 486



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 144/312 (46%), Gaps = 45/312 (14%)

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           +D+AR VFDK     +Y++  +        R +  L+L+  M         D  ++  ++
Sbjct: 27  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMP------VKDVVSWNSMI 80

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV------------ 238
           K C   +     L   +++   +        V   TT+I+ + +FG +            
Sbjct: 81  KGCFDCA----DLTMARKLFDEMPERS----VVSWTTMINGFLQFGKIEVAEGLFYKMPF 132

Query: 239 --------MYAGF-----------VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
                   M  G+           +F +M  +NV+SW++MI    ++G + EAL LFR+M
Sbjct: 133 RDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQM 192

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           +    ++ P S T   V+ ACA  +AL QG  IH ++ + G      + +AL+T YA C 
Sbjct: 193 MGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCK 252

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           ++E    VF      +VV W +L++ YG++     A+++F EM+  GV P+  SF S L 
Sbjct: 253 QMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALN 312

Query: 400 ACSHAGLVEEGK 411
           +C     ++ G+
Sbjct: 313 SCCGLEALDWGR 324



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 127/267 (47%), Gaps = 30/267 (11%)

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI-ACYARNGMAFEALELFREMI 280
           V++ T +I  YAR     +A  +F +M VK+VVSW++MI  C+    +   A +LF EM 
Sbjct: 42  VYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTM-ARKLFDEMP 100

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV--VSALVTM-YAR 337
             S       V+  +++        +E         +  GL   +P   ++A  +M Y  
Sbjct: 101 ERS------VVSWTTMINGFLQFGKIE---------VAEGLFYKMPFRDIAAWNSMIYGY 145

Query: 338 C--GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS-- 393
           C  G++E G  +F  M  R+V+SW S+I     HG   +A+ +F++M+  GV   P S  
Sbjct: 146 CCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSST 205

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY--ACMVDLLGRANKLEEAAKIIE 451
           +  V+ AC++A  + +G  +   + K   +  S + Y  A ++       ++E++ ++  
Sbjct: 206 YCCVITACANASALYQGVQIHAHVFK---LGYSFDAYISAALITFYANCKQMEDSLRVFH 262

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELA 478
             ++     +W +L+    ++C  E A
Sbjct: 263 G-KLHMNVVIWTALVTGYGLNCKHEDA 288


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/535 (41%), Positives = 321/535 (60%), Gaps = 55/535 (10%)

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           +R D  +   VL AC  +S G  L  HGK +H   +R G    + +   L+DMYA+ G V
Sbjct: 9   MRPDVVSLVNVLPAC--ASMGAWL--HGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMV 64

Query: 239 MYAGFVFSQMAVK-----------------------------------NVVSWSAMIACY 263
             A  VF ++  K                                   NVVSWSA+IA +
Sbjct: 65  DEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAF 124

Query: 264 ARNGMAFEALELFREMIM-ESHD--------------LCPNSVTMVSVLQACAALAALEQ 308
           A+ G+  E L++FREM   E++D              + PN  T+   L ACA LAAL  
Sbjct: 125 AQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRL 184

Query: 309 GKMIHGYILRRGLDS-ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
           G+ IH YILR   DS  L V + L+ MYA+ G +++ + VFD++ +++ VSW SL++ YG
Sbjct: 185 GRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYG 244

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           +HG G +A+++F EM   G+ P  ++ + VL ACSH+G++++G   F SM KE  + P  
Sbjct: 245 MHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQ 304

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           EHYACMVDLLGRA +L EA ++IE +++EP   VW +LL  CRIH NVEL E A+K+L E
Sbjct: 305 EHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLE 364

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           L   N G+Y LL+++YA A  W +V RV+ L++  G++K PG S ++ K+   +F   D+
Sbjct: 365 LNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADK 424

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
            HPQ +Q++ +L +L+  +K  GYVP+T   L+D+D EEK  ++  HSEKLA+A+G++ +
Sbjct: 425 THPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILIS 484

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + G  IRITKNLR+C DCH+   +IS   + EI++RD +RFHHF+ G CSC  YW
Sbjct: 485 APGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 159/360 (44%), Gaps = 60/360 (16%)

Query: 59  LCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV 118
           +CK G++    DV+S+           +L +C    +      VH     +G  +D F+ 
Sbjct: 1   MCKLGDIDMRPDVVSLVN---------VLPACASMGAWLHGKAVHGIAVRSGSFEDLFVG 51

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN----- 173
             L+++Y+    VD+A  VFD+ + + +  WNA+    +  GR E+ L L+ +M      
Sbjct: 52  NALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIE 111

Query: 174 --------------GTGTGIRS----------------DRFTYTY-----VLKACVASSC 198
                           G G  +                + F++ +     V   C   SC
Sbjct: 112 LNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISC 171

Query: 199 G------FSLLKHGKEIHASVLRHGYN-GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
                   + L+ G++IHA +LR+ ++   +++   LIDMYA+ G +  A FVF  +  K
Sbjct: 172 ALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQK 231

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           N VSW++++  Y  +G   EALE+F E  M    L P+ VT++ VL AC+    ++QG  
Sbjct: 232 NFVSWTSLMTGYGMHGRGKEALEVFDE--MRRVGLQPDGVTLLVVLYACSHSGMIDQGIE 289

Query: 312 IHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
               + +  G+       + +V +  R G+L     + + M  +   + W +L+S   +H
Sbjct: 290 FFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIH 349



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 81/134 (60%)

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
           D+ P+ V++V+VL ACA++ A   GK +HG  +R G    L V +ALV MYA+CG ++  
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
             VFD + ++DVVSWN++++ Y   G    A+ +F++M    +  + +S+ +V+ A +  
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 405 GLVEEGKMLFESMR 418
           GL  E   +F  M+
Sbjct: 128 GLGCETLDVFREMQ 141



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 94/234 (40%), Gaps = 42/234 (17%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTK-LINVYSHFDSVDDARH 136
           P   T    L++C    +L     +H+++  N FD     V   LI++Y+    +D AR 
Sbjct: 164 PNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARF 223

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VFD  +++    W +L     + GRG+E LE++  M     G++ D  T   VL AC  S
Sbjct: 224 VFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMR--RVGLQPDGVTLLVVLYACSHS 281

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                ++  G E   S                  M   FG             +     +
Sbjct: 282 ----GMIDQGIEFFNS------------------MSKEFG------------VIPGQEHY 307

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           + M+    R G   EA+EL   M ME     P+S+  V++L  C   A +E G+
Sbjct: 308 ACMVDLLGRAGRLNEAMELIEGMQME-----PSSIVWVALLSGCRIHANVELGE 356


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/611 (37%), Positives = 355/611 (58%), Gaps = 20/611 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N++I    + G++  AL V          T+  LL+  +     S  +  H  L D   +
Sbjct: 65  NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGIS--KDPSRMMEAH-QLFDEIPE 121

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            D F    +++ Y    + + A+  FD+   +    WN +       G  E+  EL+  M
Sbjct: 122 PDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSM 181

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                 +  +  ++  ++   +   CG  L K       + +R    G+V   T +I  Y
Sbjct: 182 ------MEKNEVSWNAMISGYI--ECG-DLEKASHFFKVAPVR----GVV-AWTAMITGY 227

Query: 233 ARFGCVMYAGFVFSQMAV-KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
            +   V  A  +F  M V KN+V+W+AMI+ Y  N    + L+LFR M+ E   + PNS 
Sbjct: 228 MKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEG--IRPNSS 285

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
            + S L  C+ L+AL+ G+ IH  + +  L + +  +++L++MY +CG+L     +F+ M
Sbjct: 286 GLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVM 345

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
            K+DVV+WN++IS Y  HG   KA+ +F+EMI + + P  I+FV+VL AC+HAGLV  G 
Sbjct: 346 KKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGM 405

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
             FESM +++ + P  +HY CMVDLLGRA KLEEA K+I  +   P   V+G+LLG+CR+
Sbjct: 406 AYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRV 465

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H NVELAE A+++L +L   NA  YV LA++YA+ + W++V RV++ ++   + KVPG S
Sbjct: 466 HKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYS 525

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            IE++ K++ F S D  HP+ + +H  L  L  +MK  GY P+ +  L++++ E+KE+++
Sbjct: 526 WIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLL 585

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
           L HSEKLAVAFG I   +G  I++ KNLR+C DCH   KFIS+   +EI+VRD  RFHHF
Sbjct: 586 LWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHF 645

Query: 652 RNGVCSCGDYW 662
           ++G CSCGDYW
Sbjct: 646 KDGSCSCGDYW 656


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/589 (37%), Positives = 349/589 (59%), Gaps = 11/589 (1%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P P Q T+  +L +      +     +HS +  +GFD + F+ T L+++Y+    +  A 
Sbjct: 241 PYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAV 300

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            VFD+   R +  WN++          +  + +++ +    T I  +  + + VL AC A
Sbjct: 301 RVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVI-PNEVSVSSVLSAC-A 358

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV--FSQMAVKNV 253
           +  G   L  G+++H  V+++G   + ++M +L+DMY  F C  +   V  F  +  ++V
Sbjct: 359 NMGG---LNFGRQVHGVVVKYGLVPLTYVMNSLMDMY--FKCRFFDEGVKLFQCVGDRDV 413

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+ ++  + +N    EA   F   +M    + P+  +  +VL + A+LAAL QG  IH
Sbjct: 414 VTWNVLVMGFVQNDKFEEACNYF--WVMRREGILPDEASFSTVLHSSASLAALHQGTAIH 471

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             I++ G    + ++ +L+TMYA+CG L     VF+ ++  +V+SW ++IS+Y +HG   
Sbjct: 472 DQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCAN 531

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           + I++F+ M+  G+ PS ++FV VL ACSH G VEEG   F SM+K H + P  EHYACM
Sbjct: 532 QVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACM 591

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLLGRA  L+EA + IE + ++P P VWG+LLG+CR + N+++   A++RLFE+EP N 
Sbjct: 592 VDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNP 651

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           GNYVLLA++   +   +E   V+RL+   G++K PG S I+VK   + F + D  H   +
Sbjct: 652 GNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSD 711

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           +++ +L  L   +K+KGYV +T+ V   L+  E+E+ +  HSEKLA+AFGL+       I
Sbjct: 712 EIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPI 771

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           RI KNLR C  CH+  K  SK  ++EI+VRD+NRFH F +G CSCGDYW
Sbjct: 772 RIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 214/411 (52%), Gaps = 13/411 (3%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR-- 143
           LL +     SL  A  +H+ +  N +   PFL   LIN+Y+    ++ A  +F  T    
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHF 207

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
           +TI  W +L   L+      + L L+ +M  +G     ++FT++ +L A  A+     ++
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGP--YPNQFTFSSILSASAAT----MMV 261

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
            HG+++H+ + +HG++  + + T L+DMYA+   +  A  VF QM  +N+VSW++MI  +
Sbjct: 262 LHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGF 321

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
             N +   A+ +F++++ E   + PN V++ SVL ACA +  L  G+ +HG +++ GL  
Sbjct: 322 FHNNLYDRAVGVFKDVLREK-TVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVP 380

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
           +  V+++L+ MY +C   + G  +F  +  RDVV+WN L+  +  +    +A   F  M 
Sbjct: 381 LTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMR 440

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
             G+ P   SF +VL + +    + +G  + + + K   ++ ++     ++ +  +   L
Sbjct: 441 REGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVK-NMCILGSLITMYAKCGSL 499

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIH-CNVELAERASKRLFE-LEPTN 492
            +A ++ E +  +     W +++ + ++H C  ++ E     L E +EP++
Sbjct: 500 VDAYQVFEGIE-DHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSH 549


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/618 (36%), Positives = 353/618 (57%), Gaps = 18/618 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS--------IEPNPTQHTYELLLLSCTHHNSLSDALNVHS 104
           N +I +  ++G + +  D+L         +E N    T   LL +C   + L     +H 
Sbjct: 383 NSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEV--TILNLLPACLEESELLSLRALHG 440

Query: 105 HLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
           +   + F     +    I  Y+   S+  A HVF     +++  WNA+       G   +
Sbjct: 441 YSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIK 500

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
            L+ Y  M  T  GI  D F+   +L AC        LL++GKEIH  VLR+G      +
Sbjct: 501 ALDFYFEM--TRLGILPDDFSIVSLLLACGR----LGLLQYGKEIHGFVLRNGLEMNSFV 554

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
             +L+ +Y       Y    F  M  KN V W+AM++ Y++N +  EAL LFR+M+  S 
Sbjct: 555 AVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQML--SD 612

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
            L P+ + + S+L AC+ L+AL  GK +H + L+  L     V  +L+ MYA+ G L   
Sbjct: 613 GLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHS 672

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           Q +F+ ++ ++V SWN +I+ +GVHG G KA+++F++M      P   +F+ VL AC HA
Sbjct: 673 QRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHA 732

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           GLV EG      M+  + + P +EHYAC++D+LGRA +L EA   I ++  EP  K+W S
Sbjct: 733 GLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSS 792

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL S   + ++E+ E+ +++L  LE   A +Y+LL+++YA A  WD V+ V++ ++   L
Sbjct: 793 LLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSL 852

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           QK  G S IE++ K+YSF++ +  +P  +++  +   L  ++ E GY P    VL++L+ 
Sbjct: 853 QKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEE 912

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
            EK +I+ GHSEK+A+ FG +NT +G T+RI+KNLR+C DCH+  K+ISK A +EI++RD
Sbjct: 913 VEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRD 972

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHF+ G+CSCGDYW
Sbjct: 973 NKRFHHFKKGICSCGDYW 990



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 173/344 (50%), Gaps = 5/344 (1%)

Query: 69  LDVLSI-EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH 127
           L+++S+ E  P   T+  L+ +CT    +    +VH      G   D F+   +I +Y  
Sbjct: 198 LELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGK 257

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
              +D+A  +FDK   + +  WN+L R  +  G   E    +R +  +G G+  D  T  
Sbjct: 258 CGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMV 317

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
            +L  C     G   +  G  IH   ++ G    + +   LIDMY++ GC+  A  +F +
Sbjct: 318 TLLPVC----SGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRK 373

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           +  K+VVSW++MI  Y+R G  FE  +L R+M ME   +  N VT++++L AC   + L 
Sbjct: 374 IENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELL 433

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
             + +HGY LR        + +A +  YA+CG L   + VF  M+ + V SWN++I  + 
Sbjct: 434 SLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHA 493

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
            +G   KA+  + EM   G+ P   S VS+L AC   GL++ GK
Sbjct: 494 QNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGK 537



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 198/415 (47%), Gaps = 42/415 (10%)

Query: 37  SLNSSTTPTS----LSSRNKN---------------ELIQSLCKQGNLRQALDVL----- 72
           SL S++TP S    +S+R ++               E I  LC+ G+L  ALD L     
Sbjct: 37  SLLSTSTPKSSYFFVSARTQSHQSRSVNPVSQLSLLEEISKLCEAGDLNGALDFLQRAWK 96

Query: 73  ---SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL-TDNGFDQDPFLVTKLINVYSHF 128
                +    +    +LL  C  + ++     +   L   + F  D  L T+LI +YS  
Sbjct: 97  NNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSIC 156

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
               ++R VFD+   + ++ WNAL          +E +  +  +    T  + D FT+  
Sbjct: 157 GYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISV-TEFQPDNFTFPC 215

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           ++KAC    C   L   GK +H   ++ G    + +   +I +Y + G +  A  +F +M
Sbjct: 216 LIKACTG-KCDIHL---GKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKM 271

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             +N++SW+++I  ++ NG   EA   FR ++     L P+  TMV++L  C+    ++ 
Sbjct: 272 PEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDV 331

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           G +IHG  ++ GL   L V +AL+ MY++CG L     +F  ++ + VVSWNS+I +Y  
Sbjct: 332 GMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSR 391

Query: 369 HGYGGKAIQIFKEMIYHG--VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
            G+  +   + ++M      +  + ++ +++L AC     +EE ++L  S+R  H
Sbjct: 392 EGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC-----LEESELL--SLRALH 439



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 138/256 (53%), Gaps = 11/256 (4%)

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
           ++G   + T LI MY+  G  + +  VF ++  KN+  W+A+++ Y RN +  EA+  F 
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
           E+I  + +  P++ T   +++AC     +  GK +HG  ++ GL   L V +A++ +Y +
Sbjct: 199 ELISVT-EFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGK 257

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY--HGVSPSPISFV 395
           CG L+    +FD M +++++SWNSLI  +  +G+  +A + F+ ++    G+ P   + V
Sbjct: 258 CGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMV 317

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDL 453
           ++L  CS  G V+ G ++     K  ++    E   C  ++D+  +   L EAA +    
Sbjct: 318 TLLPVCSGEGNVDVGMVIHGMAVKLGLVH---ELMVCNALIDMYSKCGCLSEAAILFR-- 372

Query: 454 RIEPGPKV-WGSLLGS 468
           +IE    V W S++G+
Sbjct: 373 KIENKSVVSWNSMIGA 388


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/581 (38%), Positives = 345/581 (59%), Gaps = 13/581 (2%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P   Q   ELL  S +    L     +H+ +   GF +   L+T+L+        +  AR
Sbjct: 7   PLTKQMLSELLRASSSKPKQLK---KIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYAR 63

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            VFD+  +  I++WN LF+         E + LY++M   G  +R D FTY +V+KA   
Sbjct: 64  QVFDEMPKPRIFLWNTLFKGYVRNQLPFESVLLYKKMRDLG--VRPDEFTYPFVVKAI-- 119

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           S  G  +L  G  +HA VL++G+  +  + T L+ MY +FG +  A F+F  M VK++V+
Sbjct: 120 SQLG--VLPCGVSLHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVA 177

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+A IA   + G +  ALE F +M  ++     +S T+VS+L AC  L +L+ G+ I+  
Sbjct: 178 WNAFIAVCVQTGNSAIALEYFNKMCADAVQF--DSFTVVSMLSACGQLGSLDIGEEIYDR 235

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
             +  ++  + V +A + M+ +CG  E  + +FD M +R+VVSW+++I  Y ++G  G+A
Sbjct: 236 ARKEEIECNIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEA 295

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK--EHMIRPSVEHYACM 433
           + +F  M   G+ P+ ++F+ VL ACSHAGLV EGK  F  M +  +  + P  EHYACM
Sbjct: 296 LALFTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACM 355

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLLGR+  LEEA + I+ +R+EP   +WG+LLG+C +H ++ L ++ +  L E  P   
Sbjct: 356 VDLLGRSGLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIG 415

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
             +VLL+++YAAA  WD V +V+  +   G +KV   S +E   K++ F   D  HPQ +
Sbjct: 416 SYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDGKIHFFNRGDISHPQSK 475

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
            ++  L  +  +++  GYVP T  V +D++ EEKE  +  HSEKLA+AFGLIN   G  I
Sbjct: 476 AIYEKLDEILKKIRNMGYVPDTGSVFHDVEMEEKESSLSHHSEKLAIAFGLINGRAGHPI 535

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
           R+ KNLR C+DCH F+KF+S+  ++EI++RD NRFHHFRNG
Sbjct: 536 RVMKNLRTCDDCHVFSKFVSRLTSREIIMRDKNRFHHFRNG 576


>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/689 (34%), Positives = 361/689 (52%), Gaps = 87/689 (12%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL------ 106
            +L   L     + QA  + S  PNP    Y +L+ + + +NS S A+++++HL      
Sbjct: 46  TKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPL 105

Query: 107 -TDN--------------------------GFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
             DN                          GF  D F+ + ++  Y  F  V  AR VFD
Sbjct: 106 EPDNFTYAFVISGASSLGLGLLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFD 165

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
               R   +WN +   L      +E + ++  M   G G  S        + A +     
Sbjct: 166 GMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDST------TVAAVLPGVAE 219

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
              L  G  I    ++ G++   +++T L  +Y++ G +  A  +F Q+   ++VS++AM
Sbjct: 220 LQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAM 279

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I+ Y  N     ++ LF+E+++    +  NS ++V ++        L   + IHG+  + 
Sbjct: 280 ISGYTCNNETESSVRLFKELLVSGEKV--NSSSIVGLIPVFFPFGHLHLTRCIHGFCTKS 337

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           G+ S   V +AL T+Y+R  ++E  + +FD   ++ + SWN++IS Y  +G   KAI +F
Sbjct: 338 GVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLF 397

Query: 380 KEM----------------------------------------------IYHGVSPSPIS 393
           +EM                                              ++  VSP+ ++
Sbjct: 398 QEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFMLHSRVSPTGVT 457

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           F+SVL ACSHAGLV EG  +F SM  +H   P  EHYACMVDLLGRA  L++A   I  +
Sbjct: 458 FLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKM 517

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
            +EPGP VWG+LLG+C IH +  LA  AS +LFEL+P N G YVLL+++Y+A   + E  
Sbjct: 518 PVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAA 577

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
            V+ +++ R L K PG + IEV   ++ F S D+ HPQ   ++A+L  L+ +M+E G+  
Sbjct: 578 SVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQT 637

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
           +T   L+D++ EEKE +V  HSEKLA+AFGLI +  G  IRI KNLR+C DCH+ TKFIS
Sbjct: 638 ETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFIS 697

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K   + I+VRD NRFHHF++G+CSCGDYW
Sbjct: 698 KITERVIVVRDANRFHHFKDGICSCGDYW 726



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 149/317 (47%), Gaps = 10/317 (3%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T  L L      ++L      H+ +  NG   D   VTKL +  SH  ++D A  +F   
Sbjct: 9   TRNLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTI 68

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
               ++++N L RA +L       + LY  +  + T +  D FTY +V+    +      
Sbjct: 69  PNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKS-TPLEPDNFTYAFVISGASSLG---- 123

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
               G  +HA  +  G+   + + + ++  Y +F  V  A  VF  M  ++ V W+ M++
Sbjct: 124 ---LGLLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVS 180

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
              +N    EA+ +F +M+        +S T+ +VL   A L  L  G  I    ++ G 
Sbjct: 181 GLVKNSCFDEAILIFGDMVKGGIGF--DSTTVAAVLPGVAELQDLALGMGIQCLAMKVGF 238

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
            S   V++ L  +Y++CG++E  + +F  + + D+VS+N++IS Y  +     ++++FKE
Sbjct: 239 HSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKE 298

Query: 382 MIYHGVSPSPISFVSVL 398
           ++  G   +  S V ++
Sbjct: 299 LLVSGEKVNSSSIVGLI 315


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/585 (36%), Positives = 347/585 (59%), Gaps = 8/585 (1%)

Query: 78   PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
            P Q TY  +L +CT   +L     +H+H+   GF  + ++ + LI++Y+ +  +  A  +
Sbjct: 461  PNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRI 520

Query: 138  FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
              +     +  W A+           E L+L+  M   G  I+ D   +   + AC    
Sbjct: 521  LRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRG--IQFDNIGFASAISACA--- 575

Query: 198  CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
             G   L+ G++IHA     G+   + I   LI +YAR G +  A   F ++  KN +SW+
Sbjct: 576  -GIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWN 634

Query: 258  AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            ++++  A++G   EAL++F  M+    ++  N  T  S + A A+LA ++QG+ IH  +L
Sbjct: 635  SLVSGLAQSGYFEEALQVFVRMLRTEAEV--NMFTYGSAISAAASLANIKQGQQIHSMVL 692

Query: 318  RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
            + G DS   V ++L+++YA+ G +      F+ M +R+V+SWN++I+ Y  HG G +A++
Sbjct: 693  KTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALR 752

Query: 378  IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
            +F+EM   G+ P+ ++FV VL ACSH GLV+EG   FESM K H + P  EHY C+VDLL
Sbjct: 753  LFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLL 812

Query: 438  GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            GRA +L+ A + I+++ I     +W +LL +C IH N+E+ ERA+  L ELEP ++  YV
Sbjct: 813  GRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYV 872

Query: 498  LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
            L++++YA +  W      ++L++  G++K PGRS IEVK  +++F + D+ HP   Q++ 
Sbjct: 873  LISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYE 932

Query: 558  LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
             + +L+    E GYV  +  +L + +  +K+ I   HSEKLA+AFGL++      IR+ K
Sbjct: 933  YIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMK 992

Query: 618  NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            NLR+C DCH++ K++SK +N+ I+VRD +RFHHF  GVCSC D+W
Sbjct: 993  NLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 187/370 (50%), Gaps = 8/370 (2%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
             Y  LL  C    SL + + +H  ++ +GFD +P L+  L++ Y        A  VFD+
Sbjct: 59  QNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDE 118

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
              R+++ WN +           +V  L+RRM     GI  + +T+  VLKACV     F
Sbjct: 119 NSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM--LAEGITPNGYTFAGVLKACVGGDIAF 176

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           + +   K++H+    +G++    +   LID+Y++ G +  A  VF+ + +K++V+W AMI
Sbjct: 177 NYV---KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           +  ++NG+  EA+ LF +  M + ++ P    + SVL A   +   E G+ +H  +++ G
Sbjct: 234 SGLSQNGLEEEAILLFCD--MHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
             S   V + LV +Y+R  KL   + +F  M+ RD VS+NSLIS     G+  +A+++F 
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFT 351

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           +M    + P  I+  S+L AC+  G + +G  L     K  M    +     ++DL  + 
Sbjct: 352 KMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGM-SADIILEGSLLDLYSKC 410

Query: 441 NKLEEAAKII 450
             +E A K  
Sbjct: 411 ADVETAHKFF 420



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 207/464 (44%), Gaps = 23/464 (4%)

Query: 6   SPQTPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRN--KNELIQSLCKQG 63
           SP    LL   Y  N       K  +  C   + +     S  S+N  + E I   C   
Sbjct: 194 SPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFC--- 250

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
                 D+ + E  PT +    +L + T          +H  +   GF  + ++   L+ 
Sbjct: 251 ------DMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVA 304

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +YS    +  A  +F     R    +N+L   L   G  +  LEL+ +M      ++ D 
Sbjct: 305 LYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC--LKPDC 362

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
            T   +L AC +       L  G ++H+  ++ G +  + +  +L+D+Y++   V  A  
Sbjct: 363 ITVASLLSACASVGA----LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHK 418

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
            F     +N+V W+ M+  Y +     ++ E+FR+M ME   + PN  T  S+L+ C +L
Sbjct: 419 FFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEG--MIPNQFTYPSILRTCTSL 476

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
            AL  G+ IH ++++ G    + V S L+ MYA+ G+L L   +   + + DVVSW ++I
Sbjct: 477 GALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMI 536

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHM 422
           + Y  H    +A+Q+F+EM Y G+    I F S + AC+    + +G+ +  +S      
Sbjct: 537 AGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFG 596

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
              S+ +   ++ L  R  +++EA    E +  +     W SL+
Sbjct: 597 ADLSINN--ALISLYARCGRIQEAYLAFEKIG-DKNNISWNSLV 637



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 137/284 (48%), Gaps = 12/284 (4%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G+RS+   Y ++L+ C+ S   F  ++    +H  + + G++G   ++ +L+D Y R G 
Sbjct: 53  GVRSNYQNYLWLLEGCLTSGSLFETMR----LHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
              A  VF + + ++V SW+ MI  +      F+   LFR M+ E   + PN  T   VL
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEG--ITPNGYTFAGVL 166

Query: 298 QAC-AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           +AC     A    K +H      G DS   V + L+ +Y++ G +E  + VF+ +  +D+
Sbjct: 167 KACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDI 226

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           V+W ++IS    +G   +AI +F +M    + P+P    SVL A +   L E G+ L   
Sbjct: 227 VTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCL 286

Query: 417 MRKEHMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPG 458
           + K        E Y C  +V L  R+ KL  A +I   +    G
Sbjct: 287 VIKWGF---HSETYVCNGLVALYSRSRKLISAERIFSTMNSRDG 327



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+  L + G   +AL V    L  E      TY   + +     ++     +HS +  
Sbjct: 634 NSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLK 693

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+D +  +   LI++Y+   S+ DA   F+    R +  WNA+    +  G G E L L
Sbjct: 694 TGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRL 753

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
           +  M     GI  +  T+  VL AC  S  G  L+K G +   S+ +
Sbjct: 754 FEEMK--VCGIMPNHVTFVGVLSAC--SHIG--LVKEGLDYFESMFK 794



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%)

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
            ME   +  N    + +L+ C    +L +   +H  I + G D    ++ +LV  Y R G
Sbjct: 48  FMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHG 107

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
                  VFD    R V SWN +I  +       +   +F+ M+  G++P+  +F  VL 
Sbjct: 108 DQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLK 167

Query: 400 AC 401
           AC
Sbjct: 168 AC 169


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/482 (42%), Positives = 308/482 (63%), Gaps = 8/482 (1%)

Query: 183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG 242
           + +++ +L++C  S  G + L  G+  H  +++ G+   + + T L+D YA+ G V  A 
Sbjct: 30  KTSFSLILRSCAIS--GEAQL--GEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEAR 85

Query: 243 FVFSQMAVKNV--VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
            +F  M  +N   V+W+ MI+ Y + G    A+ +F++M  +S ++ P  VTMVS+L AC
Sbjct: 86  NLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQM--QSENVKPTEVTMVSLLSAC 143

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           A L AL+ G+ IHGYI  + L   + + +AL+ MY +CG LE    VF  + ++++  WN
Sbjct: 144 AHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWN 203

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           S+I   G++G G +AI  F  M   G+ P  ++FV +L  CSH+GL+  G+  F  M   
Sbjct: 204 SIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGV 263

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           + + P VEHY CMVDLLGRA  L+EA ++I  + ++P   V GSLL +C+IH + +L E+
Sbjct: 264 YGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQ 323

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
            +++L EL+P + GNYV L+++YA+   WD+V   ++L+  RG+ K PG S IEV   ++
Sbjct: 324 VTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVH 383

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
            FV+ D  HPQF Q++A L  ++ E+K +G+VP T  VL+D++ EEKE  +  HSE++AV
Sbjct: 384 EFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAV 443

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           AFGL++T  G+TIR+ KNLR C DCHS  K IS    +EI+VRD  RFHHFRNG CSC D
Sbjct: 444 AFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCND 503

Query: 661 YW 662
           YW
Sbjct: 504 YW 505



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 116/268 (43%), Gaps = 11/268 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P++ ++ L+L SC            H  +   GF+ D  L T L++ Y+    V++AR++
Sbjct: 28  PSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNL 87

Query: 138 FDKT--RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
           FD    R      WN +  A    G     + ++++M      ++    T   +L AC  
Sbjct: 88  FDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQ--SENVKPTEVTMVSLLSACAH 145

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
                  L  G+ IH  +        V +   LIDMY + G +  A  VF  ++ KN+  
Sbjct: 146 ----LGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFC 201

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+++I     NG   EA+  F  ++ME   + P+ VT V +L  C+    L  G+     
Sbjct: 202 WNSIIVGLGMNGRGEEAIAAF--IVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSE 259

Query: 316 ILR-RGLDSILPVVSALVTMYARCGKLE 342
           +L   GL+  +     +V +  R G L+
Sbjct: 260 MLGVYGLEPGVEHYGCMVDLLGRAGYLK 287



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 105/197 (53%), Gaps = 5/197 (2%)

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           MI     +G+  + L  +  M+   +D+ P+  +   +L++CA     + G+  H  I++
Sbjct: 1   MIRVSLESGVCPDFLGFYSGML--RNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMK 58

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR--DVVSWNSLISSYGVHGYGGKAI 376
            G +  + + + L+  YA+ G +E  + +FD+M +R  + V+WN++IS+Y   G  G AI
Sbjct: 59  MGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAI 118

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F++M    V P+ ++ VS+L AC+H G ++ G+ +   +R + + +  V     ++D+
Sbjct: 119 SMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRL-KIDVVLGNALIDM 177

Query: 437 LGRANKLEEAAKIIEDL 453
             +   LE A  +   L
Sbjct: 178 YCKCGALEAAIDVFHGL 194



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 112/268 (41%), Gaps = 45/268 (16%)

Query: 37  SLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTH 92
           +L  + T  + +S   N +I +  + G    A+ +     S    PT+ T   LL +C H
Sbjct: 86  NLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAH 145

Query: 93  HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
             +L     +H ++       D  L   LI++Y    +++ A  VF    R+ I+ WN++
Sbjct: 146 LGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSI 205

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
              L + GRGEE +  +  M     GI+ D  T+  +L  C  S     LL  G+   + 
Sbjct: 206 IVGLGMNGRGEEAIAAFIVME--KEGIKPDGVTFVGILSGCSHS----GLLSAGQRYFSE 259

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
           +L       V+ +   ++ Y   GC                     M+    R G   EA
Sbjct: 260 MLG------VYGLEPGVEHY---GC---------------------MVDLLGRAGYLKEA 289

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQAC 300
           LEL R M M+     PNS+ + S+L+AC
Sbjct: 290 LELIRAMPMK-----PNSMVLGSLLRAC 312


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/538 (39%), Positives = 335/538 (62%), Gaps = 9/538 (1%)

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR-GEEVLELYRRMNGTGTGIRSDRF 184
           S +  +D AR +F + +R  I+ WN++ R  + +    +E + L+R+M   G     + F
Sbjct: 35  SPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYP-NPNTF 93

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           T  +VLKAC       S L+ G+++HA+VL+ G+     + T L++ YA+   ++ A  V
Sbjct: 94  TMAFVLKACSI----VSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKV 149

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F ++  +N+V+WS MI+ YAR G+  EAL LFR+M  +   + P+ VTMVSV+ ACAA  
Sbjct: 150 FDEITDRNLVAWSTMISGYARIGLVNEALGLFRDM--QKAGVVPDEVTMVSVISACAASG 207

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           AL+ GK +H YI ++ +++ L + +ALV MYA+CG +E  + VFD M  +D  +W+S+I 
Sbjct: 208 ALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIV 267

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
              ++G    A++ F  M    V P+ ++F+ VL AC+H+GLV EG+  + SM  E  I 
Sbjct: 268 GLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIV 326

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484
           PS+E Y CMVDLL RA+ +E+A  ++E + I P P +W +LL  C+   N++ +E  ++R
Sbjct: 327 PSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQR 386

Query: 485 LFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS 544
           L ELEP NA NY+LL+++YA+   W+++ +V++ ++  G++ VPG S IEV   ++ FV 
Sbjct: 387 LLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVM 446

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604
            D  HP+  ++  +L ++S  +   G+ P    VL+++  EEKE  +  HSE+LA+A+GL
Sbjct: 447 GDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGL 506

Query: 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + T     IRI KNLR+C DCH  TK IS    +EI+VRD  RFH F NG CSC D+W
Sbjct: 507 LKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCSCRDFW 564



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 141/289 (48%), Gaps = 9/289 (3%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           PNP   T   +L +C+  ++L +   VH+++  +GF   PF+ T L+N Y+  + +  A 
Sbjct: 88  PNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLAS 147

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            VFD+   R +  W+ +       G   E L L+R M     G+  D  T   V+ AC A
Sbjct: 148 KVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQ--KAGVVPDEVTMVSVISACAA 205

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           S      L  GK +HA + +      + + T L++MYA+ GC+  A  VF  M VK+  +
Sbjct: 206 SGA----LDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKA 261

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           WS+MI   A NG+A +ALE F    ME   + PN VT + VL ACA    + +G+     
Sbjct: 262 WSSMIVGLAINGLAEDALEEFFR--MEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSS 319

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLI 363
           +L  G+   + +   +V +  R   +E    + + M    + V W +L+
Sbjct: 320 MLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLL 368


>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
 gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/570 (39%), Positives = 330/570 (57%), Gaps = 16/570 (2%)

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           A++ H++L   G   D      L+N Y  F  +  A H+FD+     +  W +L      
Sbjct: 25  AISTHANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFDEMHEPNVVSWTSLMSGYVN 84

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            GR +  L LY +M  + + +  + FT   V+ +C       + LK GK +HA V   G 
Sbjct: 85  MGRPQSALWLYTKM--SESEVSPNGFTLATVINSCSI----LADLKTGKMVHAHVQILGL 138

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
            G + + ++L+DMY +   V  A  VF  M+ +NVVSW+AMIA YA+NG  +EALE+FRE
Sbjct: 139 QGNLVVCSSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIAGYAQNGKGYEALEVFRE 198

Query: 279 M---IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
               +ME     PN   + SV+ ACA+L  L  GK+ HG ++R G +    V SALV MY
Sbjct: 199 FSSYMMER----PNHFMLASVINACASLGRLVSGKVTHGAVIRGGYELNDVVASALVDMY 254

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           A+CG     + VF  +    V+ + S+I     +G G  ++ +F+EM    V P+ ++FV
Sbjct: 255 AKCGSFLYSEKVFRRIRNPSVIPYTSMIVGAAKYGLGKLSLNLFEEMTDRKVMPNDVTFV 314

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
            +L ACSH+GLV+EG  L  SM ++H + P V HY C+VD+L R  +L+EA K+ + +R+
Sbjct: 315 GILHACSHSGLVDEGLRLLNSMHEKHGVMPDVRHYTCVVDMLSRVGRLDEAYKLAKSIRV 374

Query: 456 EP--GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
            P  G  +WG+LL S R+H  V++A  ASK L E     AG YV L++ Y  A  W+   
Sbjct: 375 NPNEGALLWGTLLSSSRLHGRVDMAVEASKWLIEYNQQVAGAYVTLSNTYTLAGEWENAH 434

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV- 572
            ++  +E  G+ K PG S IE+K  +Y F + D    + +++ +LL  L   M E+G V 
Sbjct: 435 SLRTEMELVGVHKEPGCSWIEIKDSIYVFYAGDLSCERGDEVISLLRELERRMMERGCVG 494

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
             T +V  D++ E KE+IV  HSE+LA+AFGLI+  KG TIR+ KNLR+C DCH   K I
Sbjct: 495 GSTGLVFVDVEQEVKEKIVGLHSERLALAFGLISIPKGVTIRVMKNLRICSDCHEAFKLI 554

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           SK   ++ +VRDVNRFHHF++G C+C D+W
Sbjct: 555 SKIVERDFVVRDVNRFHHFKDGSCTCKDFW 584



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 156/314 (49%), Gaps = 13/314 (4%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E +P   T   ++ SC+    L     VH+H+   G   +  + + L+++Y   + VD A
Sbjct: 102 EVSPNGFTLATVINSCSILADLKTGKMVHAHVQILGLQGNLVVCSSLVDMYGKCNDVDGA 161

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R VFD    R +  W A+       G+G E LE++R  +      R + F    V+ AC 
Sbjct: 162 RMVFDSMSCRNVVSWTAMIAGYAQNGKGYEALEVFREFSSYMME-RPNHFMLASVINACA 220

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
           +       L  GK  H +V+R GY     + + L+DMYA+ G  +Y+  VF ++   +V+
Sbjct: 221 S----LGRLVSGKVTHGAVIRGGYELNDVVASALVDMYAKCGSFLYSEKVFRRIRNPSVI 276

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIH 313
            +++MI   A+ G+   +L LF EM      + PN VT V +L AC+    +++G ++++
Sbjct: 277 PYTSMIVGAAKYGLGKLSLNLFEEMT--DRKVMPNDVTFVGILHACSHSGLVDEGLRLLN 334

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLE----LGQCVFDHMDKRDVVSWNSLISSYGVH 369
               + G+   +   + +V M +R G+L+    L + +  + ++  ++ W +L+SS  +H
Sbjct: 335 SMHEKHGVMPDVRHYTCVVDMLSRVGRLDEAYKLAKSIRVNPNEGALL-WGTLLSSSRLH 393

Query: 370 GYGGKAIQIFKEMI 383
           G    A++  K +I
Sbjct: 394 GRVDMAVEASKWLI 407


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/609 (36%), Positives = 349/609 (57%), Gaps = 21/609 (3%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           +++   K+G + +A  +    P     ++ ++L        + +A      L D   ++D
Sbjct: 197 MVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEA----CRLFDMMPEKD 252

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
               T +I  Y     + +AR +FD+  RR +  W  +        + +   +L+  M  
Sbjct: 253 VVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP- 311

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
                  +  ++T +LK    ++CG  L +  +  +A  ++      V     +I  + +
Sbjct: 312 -----EKNEVSWTAMLKG--YTNCG-RLDEASELFNAMPIKS-----VVACNAMILCFGQ 358

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G V  A  VF QM  K+  +WSAMI  Y R G+  +ALELFR  +M+   + PN  +++
Sbjct: 359 NGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFR--MMQREGIRPNFPSLI 416

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           SVL  CA LA L+ G+ IH  ++R   D  + V S L++MY +CG L   + VFD    +
Sbjct: 417 SVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK 476

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           DVV WNS+I+ Y  HG G +A+++F +M + G+ P  ++FV VL ACS+ G V++G  +F
Sbjct: 477 DVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIF 536

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
            SM  ++ +   +EHYACMVDLLGRA KL EA  +IE + +E    +WG+LLG+CR H  
Sbjct: 537 NSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMK 596

Query: 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
           ++LAE A+K+L  LEP NAG ++LL+++YA+   WD+V  ++R +  R + K PG S I 
Sbjct: 597 LDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIV 656

Query: 535 VKRKMYSFVSVDEF-HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG 593
           V++K++ F   D   HP+  +++ +L  LS  ++E GY P    VL+D+D EEK + +  
Sbjct: 657 VEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEY 716

Query: 594 HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
           HSEKLAVA+GL+    G  IR+ KNLR+C DCH+  K I+K   +EI++RD NRFHHF++
Sbjct: 717 HSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKD 776

Query: 654 GVCSCGDYW 662
           G CSC DYW
Sbjct: 777 GSCSCRDYW 785



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 149/369 (40%), Gaps = 84/369 (22%)

Query: 105 HLTDNGFDQDPFLVTK--LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
            L  N F    F++++  LI  YS    ++ AR VFD+ R + I  WN++        R 
Sbjct: 86  RLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRP 145

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
           +E   ++ +M        S+R T ++     V+      ++   +E+   +        V
Sbjct: 146 QEAQNMFDKM--------SERNTISW--NGLVSGYINNGMINEAREVFDRMPERN----V 191

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
              T ++  Y + G +  A  +F QM  KNVVSW+ M+    + G   EA  LF      
Sbjct: 192 VSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLF------ 245

Query: 283 SHDLCP--NSVTMVSVLQACAALAALEQGK----------------MIHGYI------LR 318
             D+ P  + VT  +++     +  L + +                MI GY+      + 
Sbjct: 246 --DMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIA 303

Query: 319 RGLDSILP-----VVSALVTMYARCGKLE-----------------------LGQC---- 346
           R L  ++P       +A++  Y  CG+L+                        GQ     
Sbjct: 304 RKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVP 363

Query: 347 ----VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
               VFD M ++D  +W+++I  Y   G    A+++F+ M   G+ P+  S +SVL  C+
Sbjct: 364 KARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCA 423

Query: 403 HAGLVEEGK 411
               ++ G+
Sbjct: 424 GLANLDHGR 432



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 95/198 (47%), Gaps = 14/198 (7%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
            +LI  Y+R G +  A  VF +M  KN++SW++++A Y +N    EA  +F +M      
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER--- 158

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
              N+++   ++        + + + +   +  R + S     +A+V  Y + G +   +
Sbjct: 159 ---NTISWNGLVSGYINNGMINEAREVFDRMPERNVVSW----TAMVRGYVKEGMISEAE 211

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +F  M +++VVSW  ++      G   +A ++F  M    V    ++  +++G     G
Sbjct: 212 TLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQVG 267

Query: 406 LVEEGKMLFESMRKEHMI 423
            + E +MLF+ M + +++
Sbjct: 268 RLVEARMLFDEMPRRNVV 285



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 97/204 (47%), Gaps = 23/204 (11%)

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           ++L+T Y+R G++E  + VFD M  ++++SWNS+++ Y  +    +A  +F +M      
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----SE 157

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
            + IS+  ++    + G++ E + +F+ M + +++      +  MV    +   + EA  
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPERNVV-----SWTAMVRGYVKEGMISEAET 212

Query: 449 IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
           +   +  E     W  +LG       ++ A     RLF++ P          DV    +M
Sbjct: 213 LFWQMP-EKNVVSWTVMLGGLLQEGRIDEA----CRLFDMMPEK--------DVVTRTNM 259

Query: 509 WDEVKRVKRLLEARGL-QKVPGRS 531
                +V RL+EAR L  ++P R+
Sbjct: 260 IGGYCQVGRLVEARMLFDEMPRRN 283


>gi|356521885|ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Glycine max]
          Length = 603

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/571 (38%), Positives = 332/571 (58%), Gaps = 11/571 (1%)

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRA 155
           L+ A + HS++  +G   D F    LIN Y    ++D A+ +FD+   R +  W +L   
Sbjct: 40  LTSATSTHSNVVKSGLSNDTFATNHLINCYLRLFTIDHAQKLFDEMPHRNVVSWTSLMAG 99

Query: 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
               G+    L L+ +M GT   +  + FT+  ++ AC       + L+ G+ IHA V  
Sbjct: 100 YVSQGQPNMALCLFHQMQGTL--VLPNEFTFATLINACSI----LANLEIGRRIHALVEV 153

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
            G    +   ++LIDMY +   V  A  +F  M  +NVVSW++MI  Y++N     AL+L
Sbjct: 154 SGLGSNLVACSSLIDMYGKCNHVDEARLIFDSMCTRNVVSWTSMITTYSQNAQGHHALQL 213

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F+E      D  PN   + S + ACA+L +L  GK+ HG ++R G ++   + SALV MY
Sbjct: 214 FKEFNHSRLDK-PNHFMLCSAVSACASLGSLGSGKITHGVVIRLGHEASDVIASALVDMY 272

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           A+CG +     +F  +    V+ + S+I     +G G  ++Q+F+EM+   + P+ I+FV
Sbjct: 273 AKCGCVNYSAKIFRRIQNPSVIPYTSMIVGAAKYGLGILSLQLFQEMVVRRIKPNDITFV 332

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
            VL ACSH+GLV++G  L +SM  ++ + P  +HY C+ D+LGR  ++EEA ++ + +++
Sbjct: 333 GVLHACSHSGLVDKGLELLDSMDGKYGVTPDAKHYTCIADMLGRVGRIEEAYQLAKSVQV 392

Query: 456 EPG--PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
           E      +WG+LL + R++  V++A  AS RL E     AG YV L++ YA A  W+   
Sbjct: 393 EGDGYAMLWGTLLSASRLYGRVDIALEASNRLIESNQQVAGAYVTLSNAYALAGDWENAH 452

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD-EFHPQFEQLHALLINLSAEMKEKGYV 572
            ++  ++  G+ K PG S IE+K   Y F + D   + Q  ++ +LL  L   MK +GYV
Sbjct: 453 NLRSEMKHTGVYKEPGSSWIEIKESTYLFHAGDISKYTQGREILSLLRELEERMKGRGYV 512

Query: 573 PQTK-VVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKF 631
             TK +V  D++ E KE IV  HSEKLA+AFGLINT KG TIRI KNLR+C DCH   K 
Sbjct: 513 GGTKGLVFVDVEEEAKEEIVSMHSEKLALAFGLINTPKGVTIRIMKNLRMCRDCHGAFKL 572

Query: 632 ISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IS    +E++VRDVNRFHHF+NG+C+CGD+W
Sbjct: 573 ISDIVERELVVRDVNRFHHFKNGLCTCGDFW 603


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/609 (36%), Positives = 349/609 (57%), Gaps = 21/609 (3%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           +++   K+G + +A  +    P     ++ ++L        + +A      L D   ++D
Sbjct: 197 MVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEA----CRLFDMMPEKD 252

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
               T +I  Y     + +AR +FD+  RR +  W  +        + +   +L+  M  
Sbjct: 253 VVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP- 311

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
                  +  ++T +LK    ++CG  L +  +  +A  ++      V     +I  + +
Sbjct: 312 -----EKNEVSWTAMLKG--YTNCG-RLDEASELFNAMPIKS-----VVACNAMILCFGQ 358

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G V  A  VF QM  K+  +WSAMI  Y R G+  +ALELFR  +M+   + PN  +++
Sbjct: 359 NGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFR--MMQREGIRPNFPSLI 416

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           SVL  CA LA L+ G+ IH  ++R   D  + V S L++MY +CG L   + VFD    +
Sbjct: 417 SVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK 476

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           DVV WNS+I+ Y  HG G +A+++F +M + G+ P  ++FV VL ACS+ G V++G  +F
Sbjct: 477 DVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIF 536

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
            SM  ++ +   +EHYACMVDLLGRA KL EA  +IE + +E    +WG+LLG+CR H  
Sbjct: 537 NSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMK 596

Query: 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
           ++LAE A+K+L  LEP NAG ++LL+++YA+   WD+V  ++R +  R + K PG S I 
Sbjct: 597 LDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIV 656

Query: 535 VKRKMYSFVSVDEF-HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG 593
           V++K++ F   D   HP+  +++ +L  LS  ++E GY P    VL+D+D EEK + +  
Sbjct: 657 VEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEY 716

Query: 594 HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
           HSEKLAVA+GL+    G  IR+ KNLR+C DCH+  K I+K   +EI++RD NRFHHF++
Sbjct: 717 HSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKD 776

Query: 654 GVCSCGDYW 662
           G CSC DYW
Sbjct: 777 GSCSCRDYW 785



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 149/369 (40%), Gaps = 84/369 (22%)

Query: 105 HLTDNGFDQDPFLVTK--LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
            L  N F    F++++  LI  YS    ++ AR VFD+ R + I  WN++        R 
Sbjct: 86  RLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRP 145

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
           +E   ++ +M        S+R T ++     V+      ++   +E+   +        V
Sbjct: 146 QEAQNMFDKM--------SERNTISW--NGLVSGYINNGMINEAREVFDRMPERN----V 191

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
              T ++  Y + G +  A  +F QM  KNVVSW+ M+    + G   EA  LF      
Sbjct: 192 VSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLF------ 245

Query: 283 SHDLCP--NSVTMVSVLQACAALAALEQGK----------------MIHGYI------LR 318
             D+ P  + VT  +++     +  L + +                MI GY+      + 
Sbjct: 246 --DMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIA 303

Query: 319 RGLDSILP-----VVSALVTMYARCGKLE-----------------------LGQC---- 346
           R L  ++P       +A++  Y  CG+L+                        GQ     
Sbjct: 304 RKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVP 363

Query: 347 ----VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
               VFD M ++D  +W+++I  Y   G    A+++F+ M   G+ P+  S +SVL  C+
Sbjct: 364 KARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCA 423

Query: 403 HAGLVEEGK 411
               ++ G+
Sbjct: 424 GLANLDHGR 432



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 95/198 (47%), Gaps = 14/198 (7%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
            +LI  Y+R G +  A  VF +M  KN++SW++++A Y +N    EA  +F +M      
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER--- 158

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
              N+++   ++        + + + +   +  R + S     +A+V  Y + G +   +
Sbjct: 159 ---NTISWNGLVSGYINNGMINEAREVFDRMPERNVVSW----TAMVRGYVKEGMISEAE 211

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +F  M +++VVSW  ++      G   +A ++F  M    V    ++  +++G     G
Sbjct: 212 TLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQVG 267

Query: 406 LVEEGKMLFESMRKEHMI 423
            + E +MLF+ M + +++
Sbjct: 268 RLVEARMLFDEMPRRNVV 285



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 97/204 (47%), Gaps = 23/204 (11%)

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           ++L+T Y+R G++E  + VFD M  ++++SWNS+++ Y  +    +A  +F +M      
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----SE 157

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
            + IS+  ++    + G++ E + +F+ M + +++      +  MV    +   + EA  
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPERNVV-----SWTAMVRGYVKEGMISEAET 212

Query: 449 IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
           +   +  E     W  +LG       ++ A     RLF++ P          DV    +M
Sbjct: 213 LFWQMP-EKNVVSWTVMLGGLLQEGRIDEA----CRLFDMMPEK--------DVVTRTNM 259

Query: 509 WDEVKRVKRLLEARGL-QKVPGRS 531
                +V RL+EAR L  ++P R+
Sbjct: 260 IGGYCQVGRLVEARMLFDEMPRRN 283


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/614 (37%), Positives = 345/614 (56%), Gaps = 12/614 (1%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN---PTQH-TYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++    K+G   QAL + +       P  H T+  +L        L     VH+ +  
Sbjct: 205 NAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLR 264

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +    + F+   L++ YS  D +DD R +FD+   R    +N +  A         VL L
Sbjct: 265 STSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRL 324

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +R M   G     DR    Y     VA S     +  GK+IHA ++  G      +   L
Sbjct: 325 FREMQKLGF----DRQVLPYATMLSVAGS--LPDVHIGKQIHAQLVLLGLASEDLLGNAL 378

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY++ G +  A   FS  + K+ +SW+A+I  Y +NG   EAL+LF +M      L P
Sbjct: 379 IDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM--RRAGLRP 436

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +  T  S+++A ++LA +  G+ +H Y++R G  S +   S LV MYA+CG L+     F
Sbjct: 437 DRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTF 496

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M +R+ +SWN++IS+Y  +G    AI++F+ M++ G +P  ++F+SVL ACSH GL +
Sbjct: 497 DEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLAD 556

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           E    F  M+ ++ I P  EHYAC++D LGR     +  K++ ++  +  P +W S+L S
Sbjct: 557 ECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHS 616

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH N ELA  A+ +LF +EPT+A  YV+L+++YA A  W++   VK+++  RG++K  
Sbjct: 617 CRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKES 676

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +E+K+K+YSF S D   P  +++   L  L  EM ++GY P     L+ +D E K 
Sbjct: 677 GYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKL 736

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSE+LA+AF L+NT  G  IRI KNL  C DCH+  K ISK  N++I+VRD  RF
Sbjct: 737 ESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRF 796

Query: 649 HHFRNGVCSCGDYW 662
           HHF++GVCSCGDYW
Sbjct: 797 HHFKDGVCSCGDYW 810



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 172/353 (48%), Gaps = 9/353 (2%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           ++H      G D   F+   L++ Y     +  AR VF +   +    +NA+    +  G
Sbjct: 156 SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEG 215

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
              + L+L+  M     GI +  FT++ +L      + G + L  G ++HA VLR     
Sbjct: 216 LHTQALQLFAAMR--RAGIPATHFTFSSILTV----AAGMAHLLLGHQVHALVLRSTSVL 269

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            V +  +L+D Y++  C+     +F +M  ++ VS++ +IA YA N  A   L LFREM 
Sbjct: 270 NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 329

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
               D     +   ++L    +L  +  GK IH  ++  GL S   + +AL+ MY++CG 
Sbjct: 330 KLGFD--RQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGM 387

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L+  +  F +  ++  +SW +LI+ Y  +G   +A+Q+F +M   G+ P   +F S++ A
Sbjct: 388 LDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKA 447

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            S   ++  G+ L   + +    + SV   + +VD+  +   L+EA +  +++
Sbjct: 448 SSSLAMIGLGRQLHSYLIRSGY-KSSVFSGSVLVDMYAKCGCLDEALRTFDEM 499



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 150/319 (47%), Gaps = 25/319 (7%)

Query: 103 HSHLTDNGFDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           H H     FDQ P    F +  +++ YS    +  A+H+F  +  R    W  + RA   
Sbjct: 58  HLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAA 117

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK--ACVASSCGFSLLKHGKEIHASVLRH 216
           AGR  + L L+R M   G G+  DR T T VL    C   S           +H   ++ 
Sbjct: 118 AGRTSDALSLFRAM--LGEGVIPDRVTVTTVLNLPGCTVPS-----------LHPFAIKF 164

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
           G +  V +  TL+D Y + G +  A  VF +M  K+ V+++AM+   ++ G+  +AL+LF
Sbjct: 165 GLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLF 224

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV--SALVTM 334
               M    +     T  S+L   A +A L  G  +H  +LR    S+L V   ++L+  
Sbjct: 225 --AAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRS--TSVLNVFVNNSLLDF 280

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y++C  L+  + +FD M +RD VS+N +I++Y  +      +++F+EM   G     + +
Sbjct: 281 YSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPY 340

Query: 395 VSVLGACSHAGLVEEGKML 413
            ++L        V  GK +
Sbjct: 341 ATMLSVAGSLPDVHIGKQI 359


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/624 (36%), Positives = 348/624 (55%), Gaps = 45/624 (7%)

Query: 76  PNPTQHTYE----LLLLSCTHHN--SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
           PNP   +++     +++S  H N  +     ++H H       QDPF+  +L+ VY   +
Sbjct: 14  PNPHSSSHDSNLRRVIISLLHKNRKNPKHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVN 73

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
            +D A  +F  T+   +Y++ +L       G   + + L+ +M      + +D +  T +
Sbjct: 74  YIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQM--VRKHVLADNYAVTAM 131

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV-----MYAGF- 243
           LKACV        L  GKE+H  VL+ G      I   L+++Y + G +     M+ G  
Sbjct: 132 LKACVLQRA----LGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMP 187

Query: 244 -------------------------VFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
                                    VF++M  ++ V W+ +I    RNG     LE+FRE
Sbjct: 188 ERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFRE 247

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M ++  +  PN VT V VL ACA L ALE G+ IH Y+ + G++    V  AL+ MY+RC
Sbjct: 248 MQVKGVE--PNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRC 305

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G ++  Q +FD +  +DV ++NS+I    +HG   +A+++F EM+   V P+ I+FV VL
Sbjct: 306 GDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVL 365

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSH GLV+ G  +FESM   H I P VEHY CMVD+LGR  +LEEA   I  + +E  
Sbjct: 366 NACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEAD 425

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
            K+  SLL +C+IH N+ + E+ +K L E    ++G++++L++ YA+   W     V+  
Sbjct: 426 DKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREK 485

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
           +E  G+ K PG S IEV   ++ F S D  HP+ ++++  L  L+   K +GY+P T+V 
Sbjct: 486 MEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEVA 545

Query: 579 LYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANK 638
           L+D+D E+KE  +  HSE+LA+ +GL++T    T+R+ KNLR+C+DCH+  K I+K   +
Sbjct: 546 LHDIDDEQKELALAVHSERLAICYGLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRR 605

Query: 639 EILVRDVNRFHHFRNGVCSCGDYW 662
           +I+VRD NRFHHF NG CSC DYW
Sbjct: 606 KIVVRDRNRFHHFENGECSCKDYW 629


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 342/602 (56%), Gaps = 41/602 (6%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWNA 151
           NS  +   VH+ +           +T++  V +   S   A+ +F   + ++   +VWN+
Sbjct: 39  NSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNS 98

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
             +AL       + + L+ R+      +  D FT + VL+AC+        L +G+ +H 
Sbjct: 99  CLKALAEGDSPIDAIMLFYRLRQYD--VCPDTFTCSSVLRACL----NLLDLSNGRILHG 152

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFG--------------------CVMYAGFV------- 244
            V + G+   +++   ++ +YA  G                     +M A  +       
Sbjct: 153 VVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEG 212

Query: 245 ----FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
               FS+M  +NV SW++MIA Y + G A EA+ LF +M  E   +  N VT+V+VL AC
Sbjct: 213 AYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKM--EEAGVKCNEVTVVAVLAAC 270

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           A L AL+ G  IH Y  R G    + + + L+ MY +CG LE    VF+ M++R VVSW+
Sbjct: 271 ADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWS 330

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           ++I    +HG   +A+++F +M   G+ P+ ++F+ +L ACSH GL+ EG+  F SM ++
Sbjct: 331 AMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRD 390

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           + I P +EHY CMVDLL RA  L EA + I ++ ++P   VWG+LLG+CR+H NVE+AE 
Sbjct: 391 YGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEE 450

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
           A K L EL+P N G YV+L+++YA A  W++  RV++ ++ R ++K PG S I V   ++
Sbjct: 451 AIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVH 510

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
            FV+ +E HP  EQ+      L  EM+ KGYVP T VVL D++  EK + V  HSEKLA+
Sbjct: 511 EFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLAL 570

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
            FGL+NT     IRI KNLR+CEDCHS  K IS   N+EI+VRD NRFH F +  CSC D
Sbjct: 571 VFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRD 630

Query: 661 YW 662
           YW
Sbjct: 631 YW 632



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 41/347 (11%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L +C +   LS+   +H  +   GF  + +L   ++++Y+    + +AR +
Sbjct: 126 PDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLL 185

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT-------------------- 177
           F+K  +R +  WN +   L   G  E   +L+ RM                         
Sbjct: 186 FEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAI 245

Query: 178 ---------GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
                    G++ +  T   VL AC         L  G  IH    RHG+   V I  TL
Sbjct: 246 HLFAKMEEAGVKCNEVTVVAVLAACA----DLGALDLGMRIHEYSNRHGFKRNVRISNTL 301

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY + GC+  A  VF +M  + VVSWSAMI   A +G A EAL LF +  M    + P
Sbjct: 302 IDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSD--MSQVGIEP 359

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKL-ELGQC 346
           N VT + +L AC+ +  + +G+     + R  G+   +     +V + +R G L E  + 
Sbjct: 360 NGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEF 419

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           + +   K + V W +L+ +  VH    K +++ +E I H +   P++
Sbjct: 420 ILNMPMKPNGVVWGALLGACRVH----KNVEMAEEAIKHLLELDPLN 462


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/535 (39%), Positives = 318/535 (59%), Gaps = 20/535 (3%)

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           +D A  VF     R +  WN +   L+  G  EE   ++R M         +  ++  ++
Sbjct: 88  IDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPA------RNAVSWNAMV 141

Query: 191 KACVASS---CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
            A  +S       +L ++  E   ++L           T ++  Y   G V  A   F  
Sbjct: 142 AARASSGDMGAAENLFRNAPEKTDAIL----------WTAMVSGYMDTGNVQKAMEYFRA 191

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M V+N+VSW+A++A Y +N  A +AL +F+ M+ E   + PN  T+ SVL  C+ L+AL 
Sbjct: 192 MPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMV-EDAIVQPNPSTLSSVLLGCSNLSALG 250

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+ +H + ++  L   + V ++L++MY +CG L+    +FD M  +D+V+WN++IS Y 
Sbjct: 251 FGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYA 310

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
            HG G KAI++F++M   GV P  I+ ++VL AC H GL + G   FE+M++ + I P V
Sbjct: 311 QHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQV 370

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           +HY+CMVDLL RA  LE A  +I  +  EP P  +G+LL +CR++ N+E AE A+++L E
Sbjct: 371 DHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIE 430

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
            +P NAG YV LA++YA A+ WD+V RV+R ++   + K PG S +E+K   + F S D 
Sbjct: 431 QDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDR 490

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
            HPQ + +H  L  L   MK  GY P     L+D++   K ++++ HSEKLA+AFGLI+T
Sbjct: 491 LHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKLAIAFGLIST 550

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           S G T+RI KNLR+C DCH+  K ISK  ++EI++RD  RFHHFR G CSCGDYW
Sbjct: 551 SPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 133/293 (45%), Gaps = 15/293 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N ++  L K G + +A  +    P     ++  ++ +      +  A N+  +  +    
Sbjct: 107 NTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEK--- 163

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            D  L T +++ Y    +V  A   F     R +  WNA+        R  + L +++ M
Sbjct: 164 TDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTM 223

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                 ++ +  T + VL  C       S L  G+++H   ++      + + T+L+ MY
Sbjct: 224 VEDAI-VQPNPSTLSSVLLGC----SNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMY 278

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
            + G +  A  +F +M  K++V+W+AMI+ YA++G   +A++LF +M  E   + P+ +T
Sbjct: 279 CKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEG--VVPDWIT 336

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALVTMYARCGKLE 342
           +++VL AC      + G  I  +   +   +I P V   S +V +  R G LE
Sbjct: 337 LLAVLTACIHTGLCDFG--IQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLE 387



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 116/232 (50%), Gaps = 19/232 (8%)

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           TL+  +   G +  A  VFS M V++V SW+ M++  ++NG   EA  +FR M       
Sbjct: 77  TLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR---- 132

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRG----LDSILPVVSALVTMYARCGKLE 342
             N+V+  +++ A A+      G M     L R      D+IL   +A+V+ Y   G ++
Sbjct: 133 --NAVSWNAMVAARAS-----SGDMGAAENLFRNAPEKTDAIL--WTAMVSGYMDTGNVQ 183

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGAC 401
                F  M  R++VSWN++++ Y  +   G A+++FK M+    V P+P +  SVL  C
Sbjct: 184 KAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGC 243

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           S+   +  G+ + +   K  + R S+     ++ +  +   L++A K+ +++
Sbjct: 244 SNLSALGFGRQVHQWCMKLPLGR-SITVGTSLLSMYCKCGDLDDACKLFDEM 294


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/618 (36%), Positives = 352/618 (56%), Gaps = 21/618 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G   + L++ S    +  +P   T   +  +C   ++      VH ++  
Sbjct: 268 NAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVK 327

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           + F  D  +   LI +YS    +++A  VF +   + +  W A+  +L       + +E 
Sbjct: 328 SEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVET 387

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           Y+ M   G  I  D  T   VL AC         L  G  +H   ++ G    V +  +L
Sbjct: 388 YKMMELEG--ILPDEITLVSVLSACAC----IGHLDLGIRLHEIAIKTGLVSHVIVSNSL 441

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY++  CV  A  VF  ++ KNVVSW+++I     N  +FEAL  FR+M      + P
Sbjct: 442 IDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM---KESMKP 498

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARCGKLELGQC 346
           NSVT++SVL ACA + AL +GK IH + LR G+  D  LP  +A++ MY RCG+      
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLP--NAILDMYVRCGRKVPALN 556

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
            F+   K+DV +WN L++ Y   G    A+++F +M+   + P  I+F+S+L ACS +G+
Sbjct: 557 QFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGM 615

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V EG   F  M+ ++ + P+++HYAC+VD+LGRA +L++A   I+D+ I P   +WG+LL
Sbjct: 616 VTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALL 675

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +CRIH NVEL E A+KR+FE +  + G Y+LL ++YA    WD+V +V+ L+  RGL  
Sbjct: 676 NACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSA 735

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S +E+K K+++F+S D  H Q ++++ +L    ++MKE G+         ++++  
Sbjct: 736 DPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSR 795

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
            + I  GHSE+ A+AFGLINT+ G  I +TKNL +C  CH+  KFIS    +EI VRDV 
Sbjct: 796 AD-IFCGHSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISVRDVE 854

Query: 647 RFHHFRNGVCSCGD--YW 662
            +HHF++GVCSCGD  YW
Sbjct: 855 EYHHFKDGVCSCGDEGYW 872



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 223/443 (50%), Gaps = 18/443 (4%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCT 91
           +S+  +    S   + +N  ++ LC QGNL QA+     +L +     +  Y  LL  C 
Sbjct: 49  ISVVGAAVSHSAIDQTQNLELRELCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCE 108

Query: 92  HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNA 151
              +  +   V+  ++ +       L   L++++  F ++ DA +VF K   R ++ WN 
Sbjct: 109 WRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNV 168

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           L      AG  +E L LY RM      IR + +T+  VLK C     G S +  GKEIHA
Sbjct: 169 LVGGYAKAGCFDEALNLYHRM--LWAEIRPNVYTFPSVLKTCA----GVSDIARGKEIHA 222

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
            V+R G+   V +   LI MY + G +  A  +F +M  ++ +SW+AMI+ Y  NG   E
Sbjct: 223 HVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLE 282

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
            LELF  M   S D  P+ +TM +V  AC  L     G+ +HGY+++      + + ++L
Sbjct: 283 GLELFSMMRELSVD--PDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSL 340

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MY+  G+LE  + VF  M+ +DVVSW ++I+S   H    KA++ +K M   G+ P  
Sbjct: 341 IQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDE 400

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           I+ VSVL AC+  G ++ G  L E   K  ++   +   + ++D+  +   ++ A ++  
Sbjct: 401 ITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS-LIDMYSKCKCVDNALEVFR 459

Query: 452 DLRIEPGPKV--WGSLLGSCRIH 472
           ++    G  V  W SL+   RI+
Sbjct: 460 NI---SGKNVVSWTSLILGLRIN 479


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/625 (35%), Positives = 348/625 (55%), Gaps = 25/625 (4%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDA- 99
           ++ P   S  +   L++   + G L  A+ +    P     +Y +LL        L DA 
Sbjct: 104 ASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLL------GGLLDAG 157

Query: 100 -LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            +N    L D   D+D    T +++ Y     + +AR +FD+  +R +  W A+      
Sbjct: 158 RVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQ 217

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G      +L+  M         +  ++T +L   + +      ++   E+  ++  H  
Sbjct: 218 NGEVNLARKLFEVMP------ERNEVSWTAMLVGYIQAGH----VEDAAELFNAMPEHPV 267

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
                +M      + + G V  A  VF +M  ++  +WSAMI  Y +N    EAL  FRE
Sbjct: 268 AACNAMMVG----FGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFRE 323

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M+     + PN  +++S+L  CAALA L+ G+ +H  +LR   D  +  VSAL+TMY +C
Sbjct: 324 MLWRG--VRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKC 381

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G L+  + VF   + +D+V WNS+I+ Y  HG G +A+ IF +M   G+SP  I+++  L
Sbjct: 382 GNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGAL 441

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACS+ G V+EG+ +F SM     IRP  EHY+CMVDLLGR+  +EEA  +I+++ +EP 
Sbjct: 442 TACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPD 501

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             +WG+L+G+CR+H N E+AE A+K+L ELEP NAG YVLL+ +Y +   W++  ++++ 
Sbjct: 502 AVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKF 561

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEF-HPQFEQLHALLINLSAEMKEKGYVPQTKV 577
           + +R L K PG S IE  ++++ F S D   HP+   +  +L  L   + E GY      
Sbjct: 562 ISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSF 621

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           VL+D+D E+K   +  HSE+ AVA+GL+   +G  IR+ KNLR+C DCHS  K I+K  +
Sbjct: 622 VLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITS 681

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +EI++RD NRFHHF++G CSC DYW
Sbjct: 682 REIILRDANRFHHFKDGFCSCRDYW 706



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 28/289 (9%)

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           +++ AR  F+    RT   +NAL          +  L L+RRM         D  +Y  +
Sbjct: 32  NIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPS------RDLASYNAL 85

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           +        G SL +      A+ L    +   V   T+L+  Y R G +  A  +F QM
Sbjct: 86  IS-------GLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM 138

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             +N VS++ ++      G   EA  LF E  M   D+    V   ++L        + +
Sbjct: 139 PERNHVSYTVLLGGLLDAGRVNEARRLFDE--MPDRDV----VAWTAMLSGYCQAGRITE 192

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
            + +   + +R + S     +A+++ YA+ G++ L + +F+ M +R+ VSW +++  Y  
Sbjct: 193 ARALFDEMPKRNVVSW----TAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQ 248

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
            G+   A ++F  M  H V+      V         G+V+  K +FE M
Sbjct: 249 AGHVEDAAELFNAMPEHPVAACNAMMVGF----GQRGMVDAAKTVFEKM 293


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/617 (35%), Positives = 351/617 (56%), Gaps = 15/617 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS--IEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHL 106
           N ++     +G+     DVL   +         E+ +L+    C H + L     +H + 
Sbjct: 112 NTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYS 171

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
               F  +  +    +  Y+   S+  A+ VF   R +T+  WNAL      A   +  L
Sbjct: 172 LKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGH--AQSNDPRL 229

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            L   +    +G+  D FT   +L AC         L+ GKE+H  ++R+     + +  
Sbjct: 230 SLDAHLQMKISGLLPDSFTVCSLLSACSK----LKSLRLGKEVHGFIIRNWLERDLFVYL 285

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +++ +Y   G +     +F  M  K++VSW+ +I  Y +NG    AL +FR+M++    L
Sbjct: 286 SVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQL 345

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
           C   ++M+ V  AC+ L +L  G+  H Y L+  L+    +  +L+ MYA+ G +     
Sbjct: 346 C--GISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSK 403

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF+ + ++   SWN++I  YG+HG   +AI++F+EM   G +P  ++F+ VL AC+H+GL
Sbjct: 404 VFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL 463

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII-EDLRIEPGPKVWGSL 465
           + EG    + M+    ++P+++HYAC++D+LGRA +L++A +++ E++  E    +W SL
Sbjct: 464 IHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 523

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           L SCRIH N+E+ E+ + +LFELEP    NYVLL+++YA    W++V++V++ +    L+
Sbjct: 524 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 583

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K  G S IE+ RK++SFV  + F   FE++ +L   L  ++ + GY P T  V +DL  E
Sbjct: 584 KDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEE 643

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           EK   + GHSEKLA+ +GLI TS+G TIR+ KNLR+C DCH+  K ISK   +EI+VRD 
Sbjct: 644 EKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDN 703

Query: 646 NRFHHFRNGVCSCGDYW 662
            RFHHF+NGVCSCGDYW
Sbjct: 704 KRFHHFKNGVCSCGDYW 720



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 196/414 (47%), Gaps = 11/414 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L  C     +     VH        D++  L   L+++YS    + +A+ +
Sbjct: 40  PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMI 99

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F     + +  WN +    +  G      ++ R+M   G  +++D  T    +  C    
Sbjct: 100 FKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHE- 158

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
              S L   KE+H   L+  +     +    +  YA+ G + YA  VF  +  K V SW+
Sbjct: 159 ---SFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWN 215

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           A+I  +A++      L L   + M+   L P+S T+ S+L AC+ L +L  GK +HG+I+
Sbjct: 216 ALIGGHAQSNDP--RLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 273

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R  L+  L V  +++++Y  CG+L   Q +FD M+ + +VSWN++I+ Y  +G+  +A+ 
Sbjct: 274 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 333

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F++M+ +G+    IS + V GACS    +  G+       K H++         ++D+ 
Sbjct: 334 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALK-HLLEDDAFIACSLIDMY 392

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
            +   + +++K+   L+ E     W +++    IH    LA+ A K   E++ T
Sbjct: 393 AKNGSITQSSKVFNGLK-EKSTASWNAMIMGYGIH---GLAKEAIKLFEEMQRT 442



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 120/271 (44%), Gaps = 8/271 (2%)

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRM---NGTGTGIRSDRFTYTYVLKACVASSCGF 200
           R    WN++ R  +  G  EE   L   M   NG G     D  T   VL  C       
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGA-FMPDVATLVTVLPVCARER--- 56

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             +  GK +H   ++   +  + +   L+DMY++ GC+  A  +F     KNVVSW+ M+
Sbjct: 57  -EIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMV 115

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             ++  G      ++ R+M+    D+  + VT+++ +  C   + L   K +H Y L++ 
Sbjct: 116 GGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQE 175

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
                 V +A V  YA+CG L   Q VF  +  + V SWN+LI  +        ++    
Sbjct: 176 FVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHL 235

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           +M   G+ P   +  S+L ACS    +  GK
Sbjct: 236 QMKISGLLPDSFTVCSLLSACSKLKSLRLGK 266



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 8/222 (3%)

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHD--LCPNSVTMVSVLQACAALAALEQ 308
           +N VSW++MI  ++ NG + E+  L  EM+ E+ D    P+  T+V+VL  CA    +  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           GK +HG+ ++  LD  L + +AL+ MY++CG +   Q +F   + ++VVSWN+++  +  
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 369 HGYGGKAIQIFKEMIYHG--VSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHMIRP 425
            G       + ++M+  G  V    ++ ++ +  C H   +   K L   S+++E +   
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 180

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
            V +    V    +   L  A ++   +R +     W +L+G
Sbjct: 181 LVAN--AFVASYAKCGSLSYAQRVFHGIRSKT-VNSWNALIG 219


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/614 (37%), Positives = 345/614 (56%), Gaps = 12/614 (1%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPN---PTQH-TYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++    K+G   QAL + +       P  H T+  +L        L     VH+ +  
Sbjct: 205 NAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLR 264

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +    + F+   L++ YS  D +DD R +FD+   R    +N +  A         VL L
Sbjct: 265 STSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRL 324

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +R M   G     DR    Y     VA S     +  GK+IHA ++  G      +   L
Sbjct: 325 FREMQKLGF----DRQVLPYATMLSVAGS--LPDVHIGKQIHAQLVLLGLASEDLLGNAL 378

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY++ G +  A   FS  + K+ +SW+A+I  Y +NG   EAL+LF +M      L P
Sbjct: 379 IDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM--RRAGLRP 436

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +  T  S+++A ++LA +  G+ +H Y++R G  S +   S LV MYA+CG L+     F
Sbjct: 437 DRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTF 496

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M +R+ +SWN++IS+Y  +G    AI++F+ M++ G +P  ++F+SVL ACSH GL +
Sbjct: 497 DEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLAD 556

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           E    F  M+ ++ I P  EHYAC++D LGR     +  K++ ++  +  P +W S+L S
Sbjct: 557 ECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHS 616

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH N ELA  A+ +LF +EPT+A  YV+L+++YA A  W++   VK+++  RG++K  
Sbjct: 617 CRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKES 676

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +E+K+K+YSF S D   P  +++   L  L  EM ++GY P     L+ +D E K 
Sbjct: 677 GYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKL 736

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSE+LA+AF L+NT  G  IRI KNL  C DCH+  K ISK  N++I+VRD  RF
Sbjct: 737 ESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRF 796

Query: 649 HHFRNGVCSCGDYW 662
           HHF++GVCSCGDYW
Sbjct: 797 HHFKDGVCSCGDYW 810



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 172/353 (48%), Gaps = 9/353 (2%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           ++H      G D   F+   L++ Y     +  AR VF +   +    +NA+    +  G
Sbjct: 156 SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEG 215

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
              + L+L+  M     GI +  FT++ +L      + G + L  G ++HA VLR     
Sbjct: 216 LHTQALQLFAAMR--RAGIPATHFTFSSILTV----AAGMAHLLLGHQVHALVLRSTSVL 269

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            V +  +L+D Y++  C+     +F +M  ++ VS++ +IA YA N  A   L LFREM 
Sbjct: 270 NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 329

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
               D     +   ++L    +L  +  GK IH  ++  GL S   + +AL+ MY++CG 
Sbjct: 330 KLGFD--RQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGM 387

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L+  +  F +  ++  +SW +LI+ Y  +G   +A+Q+F +M   G+ P   +F S++ A
Sbjct: 388 LDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKA 447

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            S   ++  G+ L   + +    + SV   + +VD+  +   L+EA +  +++
Sbjct: 448 SSSLAMIGLGRQLHSYLIRSG-YKSSVFSGSVLVDMYAKCGCLDEALRTFDEM 499



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 150/319 (47%), Gaps = 25/319 (7%)

Query: 103 HSHLTDNGFDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           H H     FDQ P    F +  +++ YS    +  A+H+F  +  R    W  + RA   
Sbjct: 58  HLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAA 117

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK--ACVASSCGFSLLKHGKEIHASVLRH 216
           AGR  + L L+R M   G G+  DR T T VL    C   S           +H   ++ 
Sbjct: 118 AGRTSDALSLFRAM--LGEGVIPDRVTVTTVLNLPGCTVPS-----------LHPFAIKF 164

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
           G +  V +  TL+D Y + G +  A  VF +M  K+ V+++AM+   ++ G+  +AL+LF
Sbjct: 165 GLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLF 224

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV--SALVTM 334
               M    +     T  S+L   A +A L  G  +H  +LR    S+L V   ++L+  
Sbjct: 225 AA--MRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRS--TSVLNVFVNNSLLDF 280

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y++C  L+  + +FD M +RD VS+N +I++Y  +      +++F+EM   G     + +
Sbjct: 281 YSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPY 340

Query: 395 VSVLGACSHAGLVEEGKML 413
            ++L        V  GK +
Sbjct: 341 ATMLSVAGSLPDVHIGKQI 359


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/625 (35%), Positives = 348/625 (55%), Gaps = 25/625 (4%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDA- 99
           ++ P   S  +   L++   + G L  A+ +    P     +Y +LL        L DA 
Sbjct: 104 ASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLL------GGLLDAG 157

Query: 100 -LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            +N    L D   D+D    T +++ Y     + +AR +FD+  +R +  W A+      
Sbjct: 158 RVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQ 217

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G      +L+  M         +  ++T +L   + +      ++   E+  ++  H  
Sbjct: 218 NGEVNLARKLFEVMP------ERNEVSWTAMLVGYIQAGH----VEDAAELFNAMPEHPV 267

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
                +M      + + G V  A  VF +M  ++  +WSAMI  Y +N    EAL  FRE
Sbjct: 268 AACNAMMVG----FGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFRE 323

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M+     + PN  +++S+L  CAALA L+ G+ +H  +LR   D  +  VSAL+TMY +C
Sbjct: 324 MLWRG--VRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKC 381

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G L+  + VF   + +D+V WNS+I+ Y  HG G +A+ IF +M   G+SP  I+++  L
Sbjct: 382 GNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGAL 441

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACS+ G V+EG+ +F SM     IRP  EHY+CMVDLLGR+  +EEA  +I+++ +EP 
Sbjct: 442 TACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPD 501

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             +WG+L+G+CR+H N E+AE A+K+L ELEP NAG YVLL+ +Y +   W++  ++++ 
Sbjct: 502 AVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKF 561

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEF-HPQFEQLHALLINLSAEMKEKGYVPQTKV 577
           + +R L K PG S IE  ++++ F S D   HP+   +  +L  L   + E GY      
Sbjct: 562 ISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSF 621

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           VL+D+D E+K   +  HSE+ AVA+GL+   +G  IR+ KNLR+C DCHS  K I+K  +
Sbjct: 622 VLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITS 681

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +EI++RD NRFHHF++G CSC DYW
Sbjct: 682 REIILRDANRFHHFKDGFCSCRDYW 706



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 28/289 (9%)

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           +++ AR  F+    RT   +NAL          +  L L+RRM         D  +Y  +
Sbjct: 32  NIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPS------RDLASYNAL 85

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           +        G SL +      A+ L    +   V   T+L+  Y R G +  A  +F QM
Sbjct: 86  IS-------GLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM 138

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             +N VS++ ++      G   EA  LF E  M   D+    V   ++L        + +
Sbjct: 139 PERNHVSYTVLLGGLLDAGRVNEARRLFDE--MPDRDV----VAWTAMLSGYCQAGRITE 192

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
            + +   + +R + S     +A+++ YA+ G++ L + +F+ M +R+ VSW +++  Y  
Sbjct: 193 ARALFDEMPKRNVVSW----TAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQ 248

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
            G+   A ++F  M  H V+      V         G+V+  K +FE M
Sbjct: 249 AGHVEDAAELFNAMPEHPVAACNAMMVGF----GQRGMVDAAKTVFEKM 293


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/618 (36%), Positives = 352/618 (56%), Gaps = 16/618 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS--IEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHL 106
           N ++      G++ +  D+L   +         E+ +L+    C   + L +   +H + 
Sbjct: 359 NTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYS 418

Query: 107 TDNGFDQDPFLVTK-LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
               F  +  LV    +  Y+   S+  A  VF   R +T+  WNAL    + +      
Sbjct: 419 LKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLS 478

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L+ Y +M  +G  +  D FT   +L AC         LK GKE+H  ++R+       + 
Sbjct: 479 LDAYFQMKSSG--LLPDLFTVCSLLSACSQ----IKSLKLGKEVHGLIIRNRLERDSFVY 532

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
            +L+ +Y   G +  A  +F  M  K +VSW+ M+  Y +NG    AL LFR+M++  + 
Sbjct: 533 ISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVL--YG 590

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + P  ++M+SV  AC+ L +L  G+  HGY L+  L+    +  +++ MYA+ G +    
Sbjct: 591 VQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESF 650

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VF+ + +R V SWN+++  YG+HG   +AI++F+EM   G  P  ++F+ VL AC+H+G
Sbjct: 651 KVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSG 710

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI-IEDLRIEPGPKVWGS 464
           LV EG    + M+    + P+++HYAC++D+L RA KL+EA KI  E++  EPG  +W  
Sbjct: 711 LVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNF 770

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL SCRIH N+E+ E+ + +LF  EP    NYVLL+++YA +  WDEV++V++ ++   L
Sbjct: 771 LLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSL 830

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +K  G S IE+  K++SFV+ +     FE++ +L   L  E+ + GY P T  V +DL  
Sbjct: 831 RKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLSE 890

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           EEK   + GHSEKLA+ +GLI TS+G T+R+ KNLR+C DCH+  K ISK   +EI+VRD
Sbjct: 891 EEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRD 950

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHF+NG CSCGDYW
Sbjct: 951 NKRFHHFKNGFCSCGDYW 968



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 209/440 (47%), Gaps = 22/440 (5%)

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              D  L T++I +YS   S DD+R VFD  R++ ++ WNA+  + +       VLE++ 
Sbjct: 113 LSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFV 172

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           +M  T +G+  D FT+  V+KAC     G S ++ G  +H  V++      V +   L+ 
Sbjct: 173 KMI-TESGLLPDNFTFPCVVKACA----GVSEVQVGLAVHGLVVKTRLVEDVFVSNALVS 227

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD---LC 287
            Y   G V  A  VF  M  +N+VSW++MI  ++ NG++ E   L  +M ME  D     
Sbjct: 228 FYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQM-MEKDDEIAFT 286

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+  T+ +VL  CA    +  GK +HG  ++  LD  + V +AL+ MY++CG +   Q +
Sbjct: 287 PDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVI 346

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG--VSPSPISFVSVLGACSHAG 405
           F   + ++VVSWN+++  +   G   K   + ++M+  G  +    ++ ++ +  C    
Sbjct: 347 FKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEES 406

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           ++   K L     K+  +  +       V    +   L  A ++   +R +     W +L
Sbjct: 407 VLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKT-VNSWNAL 465

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           +G      +  L+  A    F+++ +      LL D++    +     ++K L   + + 
Sbjct: 466 IGGYSQSSDPRLSLDA---YFQMKSSG-----LLPDLFTVCSLLSACSQIKSLKLGKEVH 517

Query: 526 KVPGRSRIEVKRKMYSFVSV 545
            +  R+R+E  R  + ++S+
Sbjct: 518 GLIIRNRLE--RDSFVYISL 535



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 150/337 (44%), Gaps = 7/337 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+  ++ +C   + +   L VH  +      +D F+   L++ Y    SV DA  V
Sbjct: 182 PDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRV 241

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM--NGTGTGIRSDRFTYTYVLKACVA 195
           F     R +  WN++ R  +  G  EE   L  +M           D  T   VL  C  
Sbjct: 242 FKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCAR 301

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
                  +  GK +H   ++   +  V +   L+DMY++ GC+  A  +F     KNVVS
Sbjct: 302 DR----EIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVS 357

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+ M+  ++  G   +  +L R+M+    DL  + VT+++ +  C   + L   K +H Y
Sbjct: 358 WNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCY 417

Query: 316 ILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            L++  + +   V +A V  YA+CG L     VF  +  + V SWN+LI  Y        
Sbjct: 418 SLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRL 477

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           ++  + +M   G+ P   +  S+L ACS    ++ GK
Sbjct: 478 SLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGK 514


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/611 (36%), Positives = 350/611 (57%), Gaps = 22/611 (3%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           +Q  C +  +   LD L     P ++T   ++ +CT   S+   L +HS     G   D 
Sbjct: 230 VQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDA 289

Query: 116 FLVTKLINVYSHFD---SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE-EVLELYRR 171
            +   L+++Y+  +   ++D A  VF++  +  +  W AL      +G  E +V+ L+  
Sbjct: 290 CVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGE 349

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           M      I+ +  TY+ +LK+C +     S    G+++HA V++        +   L+ M
Sbjct: 350 M--LNESIKPNHITYSSILKSCAS----ISDHDSGRQVHAHVIKSNQASAHTVGNALVSM 403

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           YA  GC+  A  VF+Q+  +      +MI C        E  +   +  +   D+  +S 
Sbjct: 404 YAESGCMEEARRVFNQLYER------SMIPCIT------EGRDFPLDHRIVRMDVGISSS 451

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T  S++ A A++  L +G+ +H   L+ G  S   V ++LV+MY+RCG LE     F+ +
Sbjct: 452 TFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNEL 511

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             R+V+SW S+IS    HGY  +A+ +F +MI  GV P+ +++++VL ACSH GLV EGK
Sbjct: 512 KDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGK 571

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
             F SM+++H + P +EHYACMVDLL R+  ++EA + I ++ ++    VW +LLG+CR 
Sbjct: 572 EYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRS 631

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H N+E+ E  +K + ELEP +   YVLL+++YA A +WDEV R++  +    L K  G S
Sbjct: 632 HDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLS 691

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            +EV+   + F + D  HP+ + ++  L  L  ++K  GYVP T +VL+D+  E KE+ +
Sbjct: 692 WMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYL 751

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
           L HSEK+AVAFGLI TS  + IRI KNLR+C DCHS  K++SK   +EI++RD NRFH  
Sbjct: 752 LQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRM 811

Query: 652 RNGVCSCGDYW 662
           ++G CSCG+YW
Sbjct: 812 KDGECSCGEYW 822



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 160/348 (45%), Gaps = 12/348 (3%)

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR-RTIYVWNALFRALTLAGRGEEVLELY 169
            D+D  +   L+ +YS   +V  AR+VFD  R  R I  W A+   L   G     L L 
Sbjct: 80  LDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLI 139

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
             M    +G+  + +T      AC        +      +   +   G +  V + + LI
Sbjct: 140 GEM--LESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTD--VAVGSALI 195

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
           DM AR G +  A  VF  +  K VV W+ +I+ Y +   A EA+ELF + + +  +  P+
Sbjct: 196 DMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFE--PD 253

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG---KLELGQC 346
             TM S++ AC  L ++  G  +H   LR GL S   V   LV MYA+      ++    
Sbjct: 254 RYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANK 313

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYG-GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
           VF+ M K DV+SW +LIS Y   G    K + +F EM+   + P+ I++ S+L +C+   
Sbjct: 314 VFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASIS 373

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
             + G+ +   + K +         A +V +   +  +EEA ++   L
Sbjct: 374 DHDSGRQVHAHVIKSNQASAHTVGNA-LVSMYAESGCMEEARRVFNQL 420



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 180/372 (48%), Gaps = 24/372 (6%)

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           +  D  + + LI++ +    +  AR VFD    +T+ VW  L          EE +EL+ 
Sbjct: 184 WGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELF- 242

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            ++    G   DR+T + ++ AC         ++ G ++H+  LR G      +   L+D
Sbjct: 243 -LDFLEDGFEPDRYTMSSMISACTE----LGSVRLGLQLHSLALRMGLASDACVSCGLVD 297

Query: 231 MYAR--FGCVM-YAGFVFSQMAVKNVVSWSAMIACYARNGMA-FEALELFREMIMESHDL 286
           MYA+   G  M YA  VF +M   +V+SW+A+I+ Y ++G+   + + LF EM+ ES  +
Sbjct: 298 MYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNES--I 355

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            PN +T  S+L++CA+++  + G+ +H ++++    S   V +ALV+MYA  G +E  + 
Sbjct: 356 KPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARR 415

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF+ + +R ++   +           G+   +   ++   V  S  +F S++ A +  G+
Sbjct: 416 VFNQLYERSMIPCIT----------EGRDFPLDHRIVRMDVGISSSTFASLISAAASVGM 465

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           + +G+ L  +M  +            +V +  R   LE+A +   +L+ +     W S++
Sbjct: 466 LTKGQQL-HAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELK-DRNVISWTSMI 523

Query: 467 GSCRIHCNVELA 478
                H   E A
Sbjct: 524 SGLAKHGYAERA 535



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 127/265 (47%), Gaps = 24/265 (9%)

Query: 203 LKHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFGCVMYAGFVFSQM-AVKNVVSWSAMI 260
           L+ G+ +H  +LR    +    +  +L+ +Y+R G V  A  VF  M  ++++VSW+AM 
Sbjct: 64  LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMA 123

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC-----AALAALEQGKMIHGY 315
           +C ARNG    +L L  EM+     L PN+ T+ +   AC       L       ++H  
Sbjct: 124 SCLARNGAERGSLLLIGEML--ESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKM 181

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
            L  G D  + V SAL+ M AR G L   + VFD + ++ VV W  LIS Y       +A
Sbjct: 182 GLW-GTD--VAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEA 238

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC--- 432
           +++F + +  G  P   +  S++ AC+  G V  G  L         +R  +   AC   
Sbjct: 239 VELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQL-----HSLALRMGLASDACVSC 293

Query: 433 -MVDLLGRAN---KLEEAAKIIEDL 453
            +VD+  ++N    ++ A K+ E +
Sbjct: 294 GLVDMYAKSNIGQAMDYANKVFERM 318


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/617 (35%), Positives = 351/617 (56%), Gaps = 15/617 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS--IEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHL 106
           N ++     +G+     DVL   +         E+ +L+    C H + L     +H + 
Sbjct: 362 NTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYS 421

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
               F  +  +    +  Y+   S+  A+ VF   R +T+  WNAL      A   +  L
Sbjct: 422 LKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGH--AQSNDPRL 479

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            L   +    +G+  D FT   +L AC         L+ GKE+H  ++R+     + +  
Sbjct: 480 SLDAHLQMKISGLLPDSFTVCSLLSACSK----LKSLRLGKEVHGFIIRNWLERDLFVYL 535

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +++ +Y   G +     +F  M  K++VSW+ +I  Y +NG    AL +FR+M++    L
Sbjct: 536 SVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQL 595

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
           C   ++M+ V  AC+ L +L  G+  H Y L+  L+    +  +L+ MYA+ G +     
Sbjct: 596 C--GISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSK 653

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF+ + ++   SWN++I  YG+HG   +AI++F+EM   G +P  ++F+ VL AC+H+GL
Sbjct: 654 VFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL 713

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII-EDLRIEPGPKVWGSL 465
           + EG    + M+    ++P+++HYAC++D+LGRA +L++A +++ E++  E    +W SL
Sbjct: 714 IHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 773

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           L SCRIH N+E+ E+ + +LFELEP    NYVLL+++YA    W++V++V++ +    L+
Sbjct: 774 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 833

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K  G S IE+ RK++SFV  + F   FE++ +L   L  ++ + GY P T  V +DL  E
Sbjct: 834 KDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEE 893

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           EK   + GHSEKLA+ +GLI TS+G TIR+ KNLR+C DCH+  K ISK   +EI+VRD 
Sbjct: 894 EKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDN 953

Query: 646 NRFHHFRNGVCSCGDYW 662
            RFHHF+NGVCSCGDYW
Sbjct: 954 KRFHHFKNGVCSCGDYW 970



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 180/360 (50%), Gaps = 13/360 (3%)

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            D  L T++I +Y+   S DD+R VFD  R + ++ WNA+  + +     +EVLE +  M
Sbjct: 118 NDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEM 177

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
             T T +  D FTY  V+KAC     G S +  G  +H  V++ G    V +   L+  Y
Sbjct: 178 IST-TDLLPDHFTYPCVIKACA----GMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFY 232

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD--LCPNS 290
              G V  A  +F  M  +N+VSW++MI  ++ NG + E+  L  EM+ E+ D    P+ 
Sbjct: 233 GTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDV 292

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T+V+VL  CA    +  GK +HG+ ++  LD  L + +AL+ MY++CG +   Q +F  
Sbjct: 293 ATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKM 352

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG--VSPSPISFVSVLGACSHAGLVE 408
            + ++VVSWN+++  +   G       + ++M+  G  V    ++ ++ +  C H   + 
Sbjct: 353 NNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLP 412

Query: 409 EGKMLF-ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
             K L   S+++E +    V +    V    +   L  A ++   +R +     W +L+G
Sbjct: 413 SLKELHCYSLKQEFVYNELVAN--AFVASYAKCGSLSYAQRVFHGIRSKT-VNSWNALIG 469



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 165/369 (44%), Gaps = 14/369 (3%)

Query: 47  LSSRNKNELIQSLCKQGNLRQALDVLSI-EPNPTQHTYELLLLSCTHHNSLSDALNVHSH 105
           +SS ++NEL   +     L   ++++S  +  P   TY  ++ +C   + +   L VH  
Sbjct: 158 ISSYSRNELYDEV-----LETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGL 212

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
           +   G  +D F+   L++ Y     V DA  +FD    R +  WN++ R  +  G  EE 
Sbjct: 213 VVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEES 272

Query: 166 LELYRRM---NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
             L   M   NG G     D  T   VL  C         +  GK +H   ++   +  +
Sbjct: 273 FLLLGEMMEENGDG-AFMPDVATLVTVLPVCARE----REIGLGKGVHGWAVKLRLDKEL 327

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
            +   L+DMY++ GC+  A  +F     KNVVSW+ M+  ++  G      ++ R+M+  
Sbjct: 328 VLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAG 387

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
             D+  + VT+++ +  C   + L   K +H Y L++       V +A V  YA+CG L 
Sbjct: 388 GEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLS 447

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
             Q VF  +  + V SWN+LI  +        ++    +M   G+ P   +  S+L ACS
Sbjct: 448 YAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACS 507

Query: 403 HAGLVEEGK 411
               +  GK
Sbjct: 508 KLKSLRLGK 516


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/614 (35%), Positives = 346/614 (56%), Gaps = 34/614 (5%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           N T+ T   +L   + +  +S    +H  +   GF+    + + L+++YS    + DA+ 
Sbjct: 133 NLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKK 192

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM----------------NGTGT--- 177
           VF     R   ++N L   L   G  E+ L+L+R M                NG      
Sbjct: 193 VFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAI 252

Query: 178 ---------GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
                    G++ D++ +  VL AC     G   +  G++IHA ++R      +++ + L
Sbjct: 253 ECFREMKIEGLKMDQYPFGSVLPAC----GGLGAINDGRQIHACIIRTNLQDHIYVGSAL 308

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY +  C+ YA  VF +M  KNVVSW+AM+  Y + G A EA+++F +M     D  P
Sbjct: 309 IDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGID--P 366

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +  T+   + ACA +++LE+G   HG  +  GL   + V ++LVT+Y +CG ++    +F
Sbjct: 367 DHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLF 426

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + M+ RD VSW +++S+Y   G   +AIQ+F +M+  G+ P  ++   V+ ACS AGLVE
Sbjct: 427 NEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVE 486

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           +G+  FE M  E+ I PS  HY+CM+DL  R+ ++EEA   I  +   P    W +LL +
Sbjct: 487 KGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSA 546

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CR   N+E+ + A++ L EL+P +   Y LL+ +YA+   WD V +++R ++ + ++K P
Sbjct: 547 CRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEP 606

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G+S I+ K K++SF + DE  P  +Q++A L  L  ++ + GY P T  V +D++   K 
Sbjct: 607 GQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEAVKI 666

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           +++  HSE+LA+AFGLI    G  IR+ KNLR+C DCH+ TK IS    +EILVRD  RF
Sbjct: 667 KMLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRF 726

Query: 649 HHFRNGVCSCGDYW 662
           H F++G CSCGD+W
Sbjct: 727 HRFKDGTCSCGDFW 740



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 177/383 (46%), Gaps = 50/383 (13%)

Query: 111 FDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FD  P    F    L+  YS    + +    F+K   R    WN L    +L+G     +
Sbjct: 61  FDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAV 120

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           + Y  M    +   + R T   +LK  ++SS G   L  GK+IH  V++ G+   + + +
Sbjct: 121 KAYNTMMKDFSSNLT-RVTLMTMLK--LSSSNGHVSL--GKQIHGQVIKLGFESYLLVGS 175

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNV------------------------------VSW 256
            L+DMY++ GC+  A  VF  +  +N                               VSW
Sbjct: 176 PLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSW 235

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           SAMI   A+NGM  EA+E FREM +E   L  +     SVL AC  L A+  G+ IH  I
Sbjct: 236 SAMIKGLAQNGMEKEAIECFREMKIEG--LKMDQYPFGSVLPACGGLGAINDGRQIHACI 293

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           +R  L   + V SAL+ MY +C  L   + VFD M +++VVSW +++  YG  G  G+A+
Sbjct: 294 IRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAV 353

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC---- 432
           +IF +M   G+ P   +    + AC++   +EEG     S      I   + HY      
Sbjct: 354 KIFLDMQRSGIDPDHYTLGQAISACANISSLEEG-----SQFHGKAITAGLIHYITVSNS 408

Query: 433 MVDLLGRANKLEEAAKIIEDLRI 455
           +V L G+   ++++ ++  ++ +
Sbjct: 409 LVTLYGKCGDIDDSTRLFNEMNV 431



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 156/402 (38%), Gaps = 102/402 (25%)

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
           Y+  +K C+    G    +H K IH +++R   +    +   ++  YA     +YA  VF
Sbjct: 6   YSAQIKQCI----GLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVF 61

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREM----------IMESHDLCP------- 288
             +   N+ SW+ ++  Y+++G   E    F ++          ++E + L         
Sbjct: 62  DGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVK 121

Query: 289 -------------NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
                          VT++++L+  ++   +  GK IHG +++ G +S L V S L+ MY
Sbjct: 122 AYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMY 181

Query: 336 ARCGKLELGQCVFDHMDKR------------------------------DVVSWNSLISS 365
           ++ G +   + VF  +D R                              D VSW+++I  
Sbjct: 182 SKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKG 241

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK------ 419
              +G   +AI+ F+EM   G+      F SVL AC   G + +G+ +   + +      
Sbjct: 242 LAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDH 301

Query: 420 ------------------------EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR- 454
                                   + M + +V  +  MV   G+  +  EA KI  D++ 
Sbjct: 302 IYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQR 361

Query: 455 --IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
             I+P     G  + +C    N+   E  S+  F  +   AG
Sbjct: 362 SGIDPDHYTLGQAISAC---ANISSLEEGSQ--FHGKAITAG 398



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 110/258 (42%), Gaps = 22/258 (8%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
           LD+     +P  +T    + +C + +SL +    H      G      +   L+ +Y   
Sbjct: 357 LDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKC 416

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
             +DD+  +F++   R    W A+  A    GR  E ++L+ +M     G++ D  T T 
Sbjct: 417 GDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKM--VQLGLKPDGVTLTG 474

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI---MTTLIDMYARFGCVMYA-GFV 244
           V+ AC  +     L++ G+     ++     GIV      + +ID+++R G +  A GF+
Sbjct: 475 VISACSRA----GLVEKGQRYFELMINE--YGIVPSNGHYSCMIDLFSRSGRIEEAMGFI 528

Query: 245 FSQMAVKNVVSWSAMI-ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
                  + + W+ ++ AC  RN    E  +   E ++E     P   T++S + A    
Sbjct: 529 NGMPFRPDAIGWTTLLSAC--RNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYA---- 582

Query: 304 AALEQGKMIHGYILRRGL 321
               +GK      LRRG+
Sbjct: 583 ---SKGKWDCVAQLRRGM 597


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/625 (35%), Positives = 348/625 (55%), Gaps = 25/625 (4%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDA- 99
           ++ P   S  +   L++   + G L  A+ +    P     +Y +LL        L DA 
Sbjct: 104 ASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLL------GGLLDAG 157

Query: 100 -LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            +N    L D   D+D    T +++ Y     + +AR +FD+  +R +  W A+      
Sbjct: 158 RVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQ 217

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G      +L+  M         +  ++T +L   + +      ++   E+  ++  H  
Sbjct: 218 NGEVNLARKLFEVMP------ERNEVSWTAMLVGYIQAGH----VEDAAELFNAMPEHPV 267

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
                +M      + + G V  A  VF +M  ++  +WSAMI  Y +N    EAL  FRE
Sbjct: 268 AACNAMMVG----FGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFRE 323

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M+     + PN  +++S+L  CAALA L+ G+ +H  +LR   D  +  VSAL+TMY +C
Sbjct: 324 MLWRG--VRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKC 381

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G L+  + VF   + +D+V WNS+I+ Y  HG G +A+ IF +M   G+SP  I+++  L
Sbjct: 382 GNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGAL 441

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACS+ G V+EG+ +F SM     IRP  EHY+CMVDLLGR+  +EEA  +I+++ +EP 
Sbjct: 442 TACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPD 501

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             +WG+L+G+CR+H N E+AE A+K+L ELEP NAG YVLL+ +Y +   W++  ++++ 
Sbjct: 502 AVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKF 561

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEF-HPQFEQLHALLINLSAEMKEKGYVPQTKV 577
           + +R L K PG S IE  ++++ F S D   HP+   +  +L  L   + E GY      
Sbjct: 562 ISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSF 621

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           VL+D+D E+K   +  HSE+ AVA+GL+   +G  IR+ KNLR+C DCHS  K I+K  +
Sbjct: 622 VLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITS 681

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +EI++RD NRFHHF++G CSC DYW
Sbjct: 682 REIVLRDANRFHHFKDGFCSCRDYW 706



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 126/291 (43%), Gaps = 28/291 (9%)

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
           +++ AR  F+    RT   +NAL          +  L L+RRM         D  +Y  +
Sbjct: 32  NIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPS------RDLASYNAL 85

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           +        G SL +      A+ L    +   V   T+L+  Y R G +  A  +F QM
Sbjct: 86  IS-------GLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM 138

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             +N VS++ ++      G   EA  LF E  M   D+    V   ++L        + +
Sbjct: 139 PERNHVSYTVLLGGLLDAGRVNEARRLFDE--MPDRDV----VAWTAMLSGYCQAGRITE 192

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
            + +   + +R + S     +A+++ YA+ G++ L + +F+ M +R+ VSW +++  Y  
Sbjct: 193 ARALFDEMPKRNVVSW----TAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQ 248

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
            G+   A ++F  M  H V+      V         G+V+  K +FE MR+
Sbjct: 249 AGHVEDAAELFNAMPEHPVAACNAMMVGF----GQRGMVDAAKTVFEKMRE 295


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/609 (37%), Positives = 341/609 (55%), Gaps = 46/609 (7%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LL  C    +L     +H+     G D D  +  +L   Y+  D +D    +   T   T
Sbjct: 41  LLTGCA---TLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPT 97

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
              + +   A +   RG  +  L       G G+     T +  L AC     G +L   
Sbjct: 98  TVFYTSAIHAHS--SRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC----HGLAL--- 148

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFG-------------------------CVMY 240
           G+ +HA   +    G  ++ T L+ MYAR G                         C   
Sbjct: 149 GRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAK 208

Query: 241 AGFV------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +      F  M  K+ + W+AMI  Y ++G   EAL LFR M+    D  P+ V ++
Sbjct: 209 MGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVD--PDEVAII 266

Query: 295 SVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
             L A A L   E G+ +H Y+   R +     V +AL+ MY +CG LE    VF+ +  
Sbjct: 267 LALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGD 326

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +D+V WN++I+ Y +HG   KA+++F ++   G+ P+ I+F+ +L ACSH+GLV+EG   
Sbjct: 327 KDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQF 386

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
           F+SM +E+ I P +EHY CMVDLLGRA  +EEA  +++ + I P   +W SLL +CR+H 
Sbjct: 387 FQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHK 446

Query: 474 NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI 533
           N+ L ++ +  L      N+G Y+LL+++YAA   W+EV RV+ +++A G+QK PG S I
Sbjct: 447 NMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAI 506

Query: 534 EVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG 593
           EV RK+Y FV+ D  HP+ ++++A+L  ++  +KE+G+VPQT++VL+DLD   KE+ +  
Sbjct: 507 EVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAV 566

Query: 594 HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
           HSEKLAVAFGLI+T+ GETI+I KNLR C DCH+  K ISK   ++I+ RD NRFHHF +
Sbjct: 567 HSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVD 626

Query: 654 GVCSCGDYW 662
           G C+CGDYW
Sbjct: 627 GSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/609 (37%), Positives = 341/609 (55%), Gaps = 46/609 (7%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LL  C    +L     +H+     G D D  +  +L   Y+  D +D    +   T   T
Sbjct: 40  LLTGCA---TLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPT 96

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
              + +   A +   RG  +  L       G G+     T +  L AC     G +L   
Sbjct: 97  TVFYTSAIHAHS--SRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC----HGLAL--- 147

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFG-------------------------CVMY 240
           G+ +HA   +    G  ++ T L+ MYAR G                         C   
Sbjct: 148 GRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAK 207

Query: 241 AGFV------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +      F  M  K+ + W+AMI  Y ++G   EAL LFR M+    D  P+ V ++
Sbjct: 208 MGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVD--PDEVAII 265

Query: 295 SVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
             L A A L   E G+ +H Y+   R +     V +AL+ MY +CG LE    VF+ +  
Sbjct: 266 LALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGD 325

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +D+V WN++I+ Y +HG   KA+++F ++   G+ P+ I+F+ +L ACSH+GLV+EG   
Sbjct: 326 KDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQF 385

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
           F+SM +E+ I P +EHY CMVDLLGRA  +EEA  +++ + I P   +W SLL +CR+H 
Sbjct: 386 FQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHK 445

Query: 474 NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI 533
           N+ L ++ +  L      N+G Y+LL+++YAA   W+EV RV+ +++A G+QK PG S I
Sbjct: 446 NMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAI 505

Query: 534 EVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG 593
           EV RK+Y FV+ D  HP+ ++++A+L  ++  +KE+G+VPQT++VL+DLD   KE+ +  
Sbjct: 506 EVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAV 565

Query: 594 HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
           HSEKLAVAFGLI+T+ GETI+I KNLR C DCH+  K ISK   ++I+ RD NRFHHF +
Sbjct: 566 HSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVD 625

Query: 654 GVCSCGDYW 662
           G C+CGDYW
Sbjct: 626 GSCTCGDYW 634


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 338/573 (58%), Gaps = 8/573 (1%)

Query: 90  CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVW 149
           C    SL    + H      G   D      LIN+Y+     D AR VFD    R+I  W
Sbjct: 67  CAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSW 126

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
           N +    T +G   + L+L+ RM+  GT +    FT +  + AC A       +   K++
Sbjct: 127 NTMIAGYTHSGEDVQALKLFSRMHREGTHM--SEFTLSSTICACAAKYA----INECKQL 180

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           H   L+   +    + T ++D+YA+   +  A +VF +M  + +V+WS++ A Y +NG+ 
Sbjct: 181 HTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLH 240

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EAL LFR    E  +L     T+ ++L ACA+LA   +G  +H  IL+ G      V +
Sbjct: 241 EEALHLFRCAQREGVEL--TEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAA 298

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           +LV +YARCG++E    +F +M+ ++VV WN++I+S+  H +  +A+ +F++M   G+ P
Sbjct: 299 SLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFP 358

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
           + ++++SVL  CSHAGLVE+G+  F  +  +  + P+V HY+CMVD+LGR+ K +EA ++
Sbjct: 359 NEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWEL 418

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
           +  +  EP   +WGSLLGSCR + N+ LA  A+++LF+LEP N GN+VLL++VYAA+  W
Sbjct: 419 LNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNW 478

Query: 510 DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569
           + V   ++ L+  G +K  GRS IE K K++ FV  +  HP+   ++  L  +  EM++ 
Sbjct: 479 ENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKF 538

Query: 570 GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
                 +  L+D+ AE+KE ++  HSEKLA++FGLI+      I I KNLR+C DCHSF 
Sbjct: 539 ARRTSIECDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHKNLRICGDCHSFM 598

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K  +    + ++VRD NRFHHF++G CSCGD+W
Sbjct: 599 KIAAHITERLVIVRDTNRFHHFKDGSCSCGDFW 631



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 159/321 (49%), Gaps = 18/321 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHLTD 108
           N +I      G   QAL + S       H  E  L S    C    ++++   +H+    
Sbjct: 127 NTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALK 186

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              D + F+ T +++VY+  + + DA  VF+K   RT+  W++LF      G  EE L L
Sbjct: 187 LALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHL 246

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +R       G+    FT + +L AC +     +L   G ++HA +L+ G++G   +  +L
Sbjct: 247 FR--CAQREGVELTEFTLSAILSACAS----LALKIEGIQLHAVILKCGFHGNFFVAASL 300

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +D+YAR G +  A  +F+ M  KNVV W+AMIA ++R+  ++EA+ LF +  M+   + P
Sbjct: 301 VDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEK--MQQLGIFP 358

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALVTMYARCGKLELGQ 345
           N VT +SVL  C+    +E+G+  H + L     ++ P V   S +V +  R GK +   
Sbjct: 359 NEVTYLSVLSVCSHAGLVEKGR--HYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAW 416

Query: 346 CVFDHMDKRDVVS-WNSLISS 365
            + + M      S W SL+ S
Sbjct: 417 ELLNKMPFEPTASMWGSLLGS 437



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 2/171 (1%)

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           LQ CA   +L  GK  HG  +  GL +     + L+ +Y +CG+ +  + VFD M  R +
Sbjct: 64  LQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSI 123

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           VSWN++I+ Y   G   +A+++F  M   G   S  +  S + AC+    + E K L   
Sbjct: 124 VSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTI 183

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
             K  +   S    A ++D+  + N +++A  + E +  E     W SL  
Sbjct: 184 ALKLALDSNSFVGTA-ILDVYAKCNMIKDACWVFEKMP-ERTLVTWSSLFA 232


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/605 (37%), Positives = 349/605 (57%), Gaps = 43/605 (7%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR--HVFDKTRRRTIYVWNA 151
            +L+    VH+ +  NG DQ  +++ KLI   +  +   D     +F++      +++NA
Sbjct: 57  KNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNA 116

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS-SCGFSLLKHGKEIH 210
           L R   +  R +E  E Y  M   G  +    FT+T + KAC A    G      G++IH
Sbjct: 117 LIRGYLIEERLKESTEFYSLMRKEG--VVPVSFTFTALFKACGAKMDVGL-----GRQIH 169

Query: 211 A-SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
             ++L  G+   +H+  ++IDMY + G +     VF +M  ++V+SW+ +I+ Y ++G  
Sbjct: 170 GQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNM 229

Query: 270 FEALELF------------------------REMIM-----ESHDLCPNSVTMVSVLQAC 300
             A ELF                        RE IM     +   +  + +T++ V+ AC
Sbjct: 230 ESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISAC 289

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVV--SALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           A L A +    I     +        VV  SAL+ MY++CG +     VF  M +R+V S
Sbjct: 290 AQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYS 349

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           ++S+I  + +HG    A+++F EM+   + P+ ++F+ VL ACSHAG+VE+G  +FE M 
Sbjct: 350 YSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELME 409

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
           K + I+PS +HY CMVDLLGRA +L+EA ++++ + IEP   VWG+LLG+CRIH + ++A
Sbjct: 410 KCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIA 469

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRK 538
             A+  LFELEP   GNY+LLA++YA+   W++V  V++L+  RGL+K P  S IE ++ 
Sbjct: 470 AIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKG 529

Query: 539 M-YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
           M + F S D  HP+  ++   L +L   ++ KGY P    V YD++ E+K RI++ HSEK
Sbjct: 530 MVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEK 589

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AFGLI+T  G  IRI KNLR+CEDCHS     S+   +EI+VRD+ RFHHF +G+CS
Sbjct: 590 LALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICS 649

Query: 658 CGDYW 662
           CG++W
Sbjct: 650 CGNFW 654


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/566 (37%), Positives = 341/566 (60%), Gaps = 9/566 (1%)

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH---VFDKTRRRTIYVWNALFRAL 156
           L +H+H+      Q P +  + ++  +    + DA +    F +     +  +N + RA 
Sbjct: 20  LQIHAHIIRTTLIQYPTVSLQFLSRIALSGPLQDASYSQRFFGQLSHPLVSHYNTMIRAC 79

Query: 157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
           +++   ++ L LYR M   G  I +D  + ++ +K+C+     F  L  G ++H ++ + 
Sbjct: 80  SMSDSPQKGLLLYRDMRRRG--IAADPLSSSFAVKSCIR----FLYLPGGVQVHCNIFKD 133

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
           G+     ++T ++D+Y+       A  VF +M  ++ V+W+ MI+C  RN    +AL LF
Sbjct: 134 GHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLF 193

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
             M   S+   P+ VT + +LQACA L ALE G+ IHGYI+ RG    L + ++L++MY+
Sbjct: 194 DVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCNSLISMYS 253

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           RCG L+    VF  M  ++VVSW+++IS   ++GYG +AI+ F+EM+  GV P   +F  
Sbjct: 254 RCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTG 313

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           VL ACS++G+V+EG   F  M +E  + P+V HY CMVDLLGRA  L++A ++I  + ++
Sbjct: 314 VLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVK 373

Query: 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516
           P   +W +LLG+CRIH +V L ER    L EL+   AG+YVLL ++Y++A  W++V  V+
Sbjct: 374 PDSTMWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVR 433

Query: 517 RLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTK 576
           +L++ + +Q  PG S IE+K  ++ FV  D  H +  +++  L  ++ +++  GYV +  
Sbjct: 434 KLMKNKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIYETLDEINHQLRIAGYVVELS 493

Query: 577 VVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFA 636
             L+ +D +EK  ++  HSEKLAVAFG++ T  G  +R+  NLR+C DCH+F K  S   
Sbjct: 494 SELHKMDDKEKGYVLSHHSEKLAVAFGVLATPPGTILRVASNLRVCVDCHNFLKLFSGVY 553

Query: 637 NKEILVRDVNRFHHFRNGVCSCGDYW 662
           N+++++RD NRFHHFR G CSC DYW
Sbjct: 554 NRDVVLRDHNRFHHFRGGRCSCSDYW 579



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 133/285 (46%), Gaps = 8/285 (2%)

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
           SC     L   + VH ++  +G   D  L+T ++++YS      DA  VFD+   R    
Sbjct: 113 SCIRFLYLPGGVQVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVA 172

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           WN +        R  + L L+  M G+      D  T   +L+AC       + L+ G+ 
Sbjct: 173 WNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAH----LNALEFGER 228

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           IH  ++  GY   +++  +LI MY+R GC+  A  VF  M  KNVVSWSAMI+  A NG 
Sbjct: 229 IHGYIMERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGY 288

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPV 327
             EA+E F EM+     + P+  T   VL AC+    +++G    H      G+   +  
Sbjct: 289 GREAIEAFEEMLRIG--VLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHH 346

Query: 328 VSALVTMYARCGKLELG-QCVFDHMDKRDVVSWNSLISSYGVHGY 371
              +V +  R G L+   Q +   + K D   W +L+ +  +HG+
Sbjct: 347 YGCMVDLLGRAGLLDKAYQLIMSMVVKPDSTMWRTLLGACRIHGH 391



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 109/272 (40%), Gaps = 49/272 (18%)

Query: 53  NELIQSLCKQGNLRQAL---DVL---SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I    +    R AL   DV+   S +  P   T  LLL +C H N+L     +H ++
Sbjct: 174 NVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYI 233

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
            + G+     L   LI++YS    +D A  VF     + +  W+A+   L + G G E +
Sbjct: 234 MERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAI 293

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV-HIM 225
           E +  M     G+  D  T+T VL AC                        Y+G+V   M
Sbjct: 294 EAFEEM--LRIGVLPDDQTFTGVLSAC-----------------------SYSGMVDEGM 328

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           +    M   FG               NV  +  M+    R G+  +A +L   M+++   
Sbjct: 329 SFFHRMSREFG------------VTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVK--- 373

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
             P+S    ++L AC     +  G+ + G+++
Sbjct: 374 --PDSTMWRTLLGACRIHGHVTLGERVIGHLI 403


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/600 (37%), Positives = 346/600 (57%), Gaps = 15/600 (2%)

Query: 67  QALDVLSIEPNPTQHTYELLLLSCTH-HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY 125
            AL V  + PNP+  T  + L S +   + L     +H+         +P ++T L+++Y
Sbjct: 57  HALRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLY 116

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
           +    +  A+ VFD+    +   W AL  A   AG   E + + R  N    G+R D FT
Sbjct: 117 AKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVAR--NAFANGMRPDSFT 174

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
              VL AC       + L  G+ +  +  + G    V + T  +D+Y + G +  A  VF
Sbjct: 175 AVRVLTACAR----IADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVF 230

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
            +M  K+ V+W AM+  YA NG   EAL+LF  + M++  + P+   +   L AC  L A
Sbjct: 231 DKMRHKDAVAWGAMVGGYASNGHPREALDLF--LAMQAEGMKPDCYAVAGALSACTRLGA 288

Query: 306 LEQGKMIHGYILRRGLDSIL--PVV-SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           L+ G+     I     D  L  PV+ +AL+ MYA+CG       VF  M K+D++ WN++
Sbjct: 289 LDLGRQA---IRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAM 345

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           I   G+ G+   A  +  +M   GV  +  +F+ +L +C+H GL+++G+  F +M K + 
Sbjct: 346 ILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYH 405

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERAS 482
           I P +EHY CMVDLL RA  L+EA ++++D+ +     + G+LLG C+IH N ELAE   
Sbjct: 406 ISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVL 465

Query: 483 KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSF 542
           K+L  LEP N+GNYV+L+++Y+    W++  +++  ++A+G++KVP  S +E + K++ F
Sbjct: 466 KQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEF 525

Query: 543 VSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAF 602
              D+ HP  +Q++  L  L  EMK  GY P T+VV++D++ EEKE  ++ HSEKLA+AF
Sbjct: 526 RVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAF 585

Query: 603 GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            L+ T  GETIR+TKNLR+C DCH+  K +S+  ++EI+VRD NRFH FR+G CSC DYW
Sbjct: 586 NLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 144/385 (37%), Gaps = 50/385 (12%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS 95
           + L S T P  L+S     L+    K G L +A  V    P+P+   +  L+ +      
Sbjct: 98  LKLPSHTNPHVLTS-----LLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGD 152

Query: 96  LSDALNVHSHLTDNGFDQDP-----------------------------------FLVTK 120
           L +A++V  +   NG   D                                    F+ T 
Sbjct: 153 LREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATA 212

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
            +++Y     +  AR VFDK R +    W A+       G   E L+L+  M     G++
Sbjct: 213 AVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQ--AEGMK 270

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D +     L AC         L  G++    V    +     + T LIDMYA+ G  + 
Sbjct: 271 PDCYAVAGALSACTR----LGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVE 326

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF QM  K+++ W+AMI      G    A  L  +  ME   +  N  T + +L +C
Sbjct: 327 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQ--MEKSGVKLNDNTFIGLLCSC 384

Query: 301 AALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVS 358
                ++ G +  H       +   +     +V + +R G L+    + D M    + V 
Sbjct: 385 THTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVI 444

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMI 383
             +L+    +H     A  + K++I
Sbjct: 445 LGALLGGCKIHRNTELAEHVLKQLI 469


>gi|302782375|ref|XP_002972961.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
 gi|300159562|gb|EFJ26182.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
          Length = 601

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/592 (36%), Positives = 334/592 (56%), Gaps = 18/592 (3%)

Query: 75  EPNPTQHTYELLLLSCTH--HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
           E    Q TY  +L SC H   + L D   +H H    GF  D  +   LI++Y+   S  
Sbjct: 24  ELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFK 83

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
            A  VFDK   + +  + ++ +A T   +  E  ELY++M     GI  D + Y   L  
Sbjct: 84  FAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKM--LSEGIMPDIYAYAAALAV 141

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
           C         ++ G+ IH  +  H     V     L+ MY RFG +  A +VF  +  K+
Sbjct: 142 C-------PTIREGEAIHVKLGNHERRTPV-CSNALVGMYGRFGRIASAKWVFDGIRYKD 193

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           + S++ MIA +A+     +A+ L+ EM  E  +L PN  T  SVL AC+ L AL +GK I
Sbjct: 194 LASYNNMIAVFAKYDDGSKAISLYIEM--EGRNLEPNLWTYTSVLDACSKLGALTEGKEI 251

Query: 313 HGYILRRGLDSILPVV--SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
           H  +  +G D    V   +ALV MYA+CG     + VF+    ++V +W SL+S+Y   G
Sbjct: 252 HKKV--KGGDQPTDVAYNTALVNMYAKCGSAHEARAVFNDCGLKNVFTWTSLMSAYSQPG 309

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
                ++ ++ M   GV P  ++F ++  ACSH+GL +EG + F +MR++H I P   HY
Sbjct: 310 QSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHY 369

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
            CM+DLLGR  +L EA +++  +   P    W  LL +C+++ ++++  RA KR+ EL P
Sbjct: 370 TCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELNP 429

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
            ++G Y+L+ ++YA A  W +V  VK++++ RGL K PG+S IE +R+++ FV  D  HP
Sbjct: 430 PDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTAHP 489

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
             +++ A L  +  ++   GY P TK VL D++ E K  ++L HSE++A+  GL+ +  G
Sbjct: 490 LNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLTSDAG 549

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            T+ I KNLR+C DCHSF K +SK  ++++LVRD +RFH F+ G CSCGDYW
Sbjct: 550 ATLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 601


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/557 (38%), Positives = 318/557 (57%), Gaps = 52/557 (9%)

Query: 111 FDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FD+ P       T +I+ Y     VD AR +F+    +    W A+    T  GR EE  
Sbjct: 194 FDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEAS 253

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL+  M                 +KA VA              +A +L  G NG V    
Sbjct: 254 ELFDAMP----------------VKAVVAC-------------NAMILGFGQNGEVA--- 281

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
                         A  VF Q+  K+  +WSAMI  Y R G   EAL LF   +M+   +
Sbjct: 282 -------------KARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLF--ALMQREGV 326

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
             N  +++SVL  CA+LA+L+ G+ +H  +++   DS + V S L+TMY +CG L   + 
Sbjct: 327 QSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQ 386

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           +FD    +D+V WNS+I+ Y  HG   +A+Q+F EM   G++   ++FV VL ACS+ G 
Sbjct: 387 IFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGK 446

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V+EG  +FESM+ ++++ P  EHYACMVDLLGRA  + +A  +I+ + +E    +WG+LL
Sbjct: 447 VKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALL 506

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+CR H N+ LAE A+K+L +LEP NAG Y+LL+++YA+   W +V  ++R +  + + K
Sbjct: 507 GACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSK 566

Query: 527 VPGRSRIEVKRKMYSFV-SVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
            PG S IEV+++++ F   V   HP+   +  +L  L   ++E GY P +  VL+D+D E
Sbjct: 567 SPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEE 626

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           EK R +  HSE+LAVAFGL+   +G  IR+ KNLR+C DCHS  K I+K   +EI++RD 
Sbjct: 627 EKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDA 686

Query: 646 NRFHHFRNGVCSCGDYW 662
           NRFHHF++G CSC DYW
Sbjct: 687 NRFHHFKDGFCSCRDYW 703



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 146/352 (41%), Gaps = 79/352 (22%)

Query: 122 INVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
           I  Y+    ++ AR VFD+   + I  WN++        R  E   L+ +M         
Sbjct: 23  IARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM--------P 74

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
           +R T ++                              NG       LI  Y +   V  A
Sbjct: 75  ERNTVSW------------------------------NG-------LISGYVKNRMVSEA 97

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
              F  M  +NVVSW+AM+  Y + G+  EA  LF +M        P      +V+    
Sbjct: 98  RKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM--------PEK----NVVSWTV 145

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVV-----SALVTMYARCGKLELGQCVFDHMDKRDV 356
            L  L Q + I      RGL  I+PV      + +++ Y + G+L   + +FD M +R+V
Sbjct: 146 MLGGLIQVRRIDEA---RGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNV 202

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           +SW ++IS Y  +G    A ++F+ M       + +S+ ++L   +  G +EE   LF++
Sbjct: 203 ISWTTMISGYVQNGQVDVARKLFEVM----PEKNEVSWTAMLMGYTQGGRIEEASELFDA 258

Query: 417 MRKEHMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           M       P     AC  M+   G+  ++ +A ++ + +R E     W +++
Sbjct: 259 M-------PVKAVVACNAMILGFGQNGEVAKARQVFDQIR-EKDDGTWSAMI 302



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 103/240 (42%), Gaps = 30/240 (12%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           L+Q    Q N    + VLS+               C    SL     VH+ L  + FD D
Sbjct: 320 LMQREGVQSNFPSLISVLSV---------------CASLASLDHGRQVHAELVKSQFDSD 364

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
            F+ + LI +Y     +  AR +FD+   + I +WN++       G  EE L+++  M  
Sbjct: 365 VFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEM-- 422

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT----LID 230
             +G+ +D  T+  VL AC  +      +K G EI  S ++  Y  +V   T     ++D
Sbjct: 423 CSSGMATDGVTFVGVLSACSYT----GKVKEGLEIFES-MKSKY--LVEPKTEHYACMVD 475

Query: 231 MYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-ACYARNGMAFEALELFREMIMESHDLCP 288
           +  R G V  A  +  +M V+ + + W A++ AC     M    +   + + +E  +  P
Sbjct: 476 LLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGP 535



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 23/217 (10%)

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           RR   S+    ++ +  YAR G++E  + VFD M  + +VSWNS+++ Y  +    +A  
Sbjct: 9   RRYCTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARY 68

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F +M       + +S+  ++       +V E +  F++M + +++      +  MV   
Sbjct: 69  LFDKMPER----NTVSWNGLISGYVKNRMVSEARKAFDTMPERNVV-----SWTAMVRGY 119

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            +   + EA  +   +  E     W  +LG       V   + A + LF++ P       
Sbjct: 120 VQEGLVSEAETLFWQMP-EKNVVSWTVMLGGL---IQVRRIDEA-RGLFDIMP------- 167

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGL-QKVPGRSRI 533
            + DV A  +M     +  RL EAR L  ++P R+ I
Sbjct: 168 -VKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVI 203


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/572 (38%), Positives = 342/572 (59%), Gaps = 13/572 (2%)

Query: 95  SLSDALNVHSHLTDNGFDQDPF--LVTKLINVYS-HFDSVDDARHVFDKTRRRTIYVWNA 151
           SL     +H+HL   G  + P     +KL+ +Y+    ++  A   F + R  +   WNA
Sbjct: 16  SLPHTKQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNA 75

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           + R    +         Y+ M      +  D  T ++VLKAC         +    +IH 
Sbjct: 76  IIRGFIQSPNPTNAFAWYKSMISKSRKV--DALTCSFVLKACARVLARLESI----QIHT 129

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
            ++R G+     + TTL+D+YA+ G +  A  VF +M  +++ SW+A+I+ +A+     E
Sbjct: 130 HIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTE 189

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           AL LF+ M  E     PN ++++  L ACA L   ++G+ IHGYI     D    V + +
Sbjct: 190 ALSLFKRM--EIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVV 247

Query: 332 VTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           + MYA+CG ++    VF+ M  ++D+V+WN++I ++ +HG G KA+++F++M   GVSP 
Sbjct: 248 IDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPD 307

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
            +S+++VL AC+H GLVEEG  LF SM +   ++P+V+HY  +VDLLGRA +L EA  I+
Sbjct: 308 DVSYLAVLCACNHGGLVEEGFRLFNSM-ENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIV 366

Query: 451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWD 510
             +   P   +W +LLG+ R H NVE+AE  S++L E+   + G++VLL++VYAA + W 
Sbjct: 367 NSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWA 426

Query: 511 EVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKG 570
           +V RV+  ++ R ++KVPG S IE    ++ F + D+ H  + +++A L  +   +KE G
Sbjct: 427 DVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYG 486

Query: 571 YVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTK 630
           YV +T  VL+D+  E+KE ++  HSEKLAVAFGLI+TS+G  I++ KNLR+C DCH   K
Sbjct: 487 YVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIK 546

Query: 631 FISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            ISK  ++EI+VRD  RFH F+ G CSC DYW
Sbjct: 547 LISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 153/328 (46%), Gaps = 14/328 (4%)

Query: 48  SSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVH 103
           S+ + N +I+   +  N   A      ++S        T   +L +C    +  +++ +H
Sbjct: 69  STNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIH 128

Query: 104 SHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE 163
           +H+   GF  D  L T L++VY+    +D A  VFD+  +R I  WNAL        +  
Sbjct: 129 THIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPT 188

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           E L L++RM     G + +  +    L AC          K G++IH  +    ++    
Sbjct: 189 EALSLFKRME--IDGFKPNEISVLGALSACAQ----LGDFKEGEKIHGYIKVERFDMNAQ 242

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAV-KNVVSWSAMIACYARNGMAFEALELFREMIME 282
           +   +IDMYA+ G V  A  VF  M+  K++V+W+ MI  +A +G   +ALELF +  M+
Sbjct: 243 VCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEK--MD 300

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
              + P+ V+ ++VL AC     +E+G  +   +   G+   +    ++V +  R G+L 
Sbjct: 301 QSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLH 360

Query: 343 LGQCVFDHMDK-RDVVSWNSLISSYGVH 369
               + + M    D+V W +L+ +   H
Sbjct: 361 EAYDIVNSMPTVPDIVLWQTLLGASRTH 388


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/602 (37%), Positives = 333/602 (55%), Gaps = 51/602 (8%)

Query: 61  KQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTK 120
           K+G L++A ++    P P   +Y  +L SC   NS  +     +   D      P   T 
Sbjct: 19  KRGKLKEAQELFVKIPEPDAVSYNTML-SCYVRNS--NMERAQAFFEDMPIKDTPSWNT- 74

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           +I  ++    +D AR +F     + +  WNA+       G  +  L+L+ +         
Sbjct: 75  MITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAP------- 127

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
                     K+ VA                              T +I  Y + G +  
Sbjct: 128 ---------FKSVVA-----------------------------WTAMITGYMKLGRIGL 149

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  +F +M  KN+V+W+AMIA Y  N  A + ++LFR M+     + PNS T+ S L  C
Sbjct: 150 AERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMV--GFGIQPNSSTLSSALLGC 207

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           + L+AL+ G+ +H  + +  L       ++L++MY +CG LE G  +F  + +RDVV+WN
Sbjct: 208 SELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWN 267

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           ++IS Y  HG G KA+ +F EMI  G+ P  I+FV+VL AC+HAG  + G   F SM K+
Sbjct: 268 AMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKD 327

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           + +    +HY CMVDLLGRA KL EA  +IE +  +P   V+G+LLG+CRIH N E+AE 
Sbjct: 328 YGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEF 387

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
           AS++L  L+P +A  YV LA+VYAA   WD V RV++ +++  + K PG S IEVK   +
Sbjct: 388 ASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAH 447

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
            F S D+FHP+   +H  L  L  +MK  GYVP  +  L+D+  E+KE+++L HSEKLA+
Sbjct: 448 QFRSGDKFHPELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEEQKEQLLLWHSEKLAI 507

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           A+GLI    G  IR+ KNLR+C DCH   K+IS+   +EI+VRD  RFHHF++G CSC D
Sbjct: 508 AYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCAD 567

Query: 661 YW 662
           YW
Sbjct: 568 YW 569



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 132/294 (44%), Gaps = 21/294 (7%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N +I    +   + +A D+  I P     T+  ++        L  AL +        F+
Sbjct: 73  NTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKL--------FE 124

Query: 113 QDPF----LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           + PF      T +I  Y     +  A  +F+K   + +  WNA+        R E+ ++L
Sbjct: 125 KAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKL 184

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +R M   G GI+ +  T +  L  C       S L+ G+++H  V +          T+L
Sbjct: 185 FRTM--VGFGIQPNSSTLSSALLGCSE----LSALQLGRQVHQLVCKSPLCDDTTAGTSL 238

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MY + G +     +F Q+  ++VV+W+AMI+ YA++G   +AL LF EMI +   + P
Sbjct: 239 ISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKG--MKP 296

Query: 289 NSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           + +T V+VL AC      + G K  H      GL +     + +V +  R GKL
Sbjct: 297 DWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKL 350



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 88/192 (45%), Gaps = 14/192 (7%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           + L  M  + G +  A  +F ++   + VS++ M++CY RN     A   F +M ++   
Sbjct: 11  SVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKD-- 68

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
             P+  TM++        A  +Q        L     +++   +A+++ Y  CG L+   
Sbjct: 69  -TPSWNTMIT------GFAQNQQMDKARDLFLIMPTKNVV-TWNAMISGYVECGDLDSAL 120

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +F+    + VV+W ++I+ Y   G  G A ++F++M    +    +++ +++       
Sbjct: 121 KLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNL----VTWNAMIAGYIENH 176

Query: 406 LVEEGKMLFESM 417
             E+G  LF +M
Sbjct: 177 RAEDGVKLFRTM 188


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/589 (37%), Positives = 348/589 (59%), Gaps = 11/589 (1%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P P Q T+  +L +      +     +HS +  +GFD + F+ T L+++Y+    +  A 
Sbjct: 6   PYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAV 65

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            VFD+   R +  WN++          +  + +++ +    T I  +  + + VL AC A
Sbjct: 66  RVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVI-PNEVSVSSVLSAC-A 123

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV--FSQMAVKNV 253
           +  G   L  G+++H  V++ G   + ++M +L+DMY  F C  +   V  F  +  ++V
Sbjct: 124 NMGG---LNFGRQVHGVVVKFGLVPLTYVMNSLMDMY--FKCRFFDEGVKLFQCVGDRDV 178

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+ ++  + +N    EA   F   +M    + P+  +  +VL + A+LAAL QG  IH
Sbjct: 179 VTWNVLVMGFVQNDKFEEACNYF--WVMRREGILPDEASFSTVLHSSASLAALHQGTAIH 236

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             I++ G    + ++ +L+TMYA+CG L     VF+ ++  +V+SW ++IS+Y +HG   
Sbjct: 237 DQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCAN 296

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           + I++F+ M+  G+ PS ++FV VL ACSH G VEEG   F SM+K H + P  EHYACM
Sbjct: 297 QVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACM 356

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLLGRA  L+EA + IE + ++P P VWG+LLG+CR + N+++   A++RLFE+EP N 
Sbjct: 357 VDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNP 416

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           GNYVLLA++   +   +E   V+RL+   G++K PG S I+VK   + F + D  H   +
Sbjct: 417 GNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSD 476

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           +++ +L  L   +K+KGYV +T+ V   L+  E+E+ +  HSEKLA+AFGL+       I
Sbjct: 477 EIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPI 536

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           RI KNLR C  CH+  K  SK  ++EI+VRD+NRFH F +G CSCGDYW
Sbjct: 537 RIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/600 (37%), Positives = 346/600 (57%), Gaps = 15/600 (2%)

Query: 67   QALDVLSIEPNPTQHTYELLLLSCTH-HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY 125
             AL V  + PNP+  T  + L S +   + L     +H+         +P ++T L+++Y
Sbjct: 536  HALRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLY 595

Query: 126  SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
            +    +  A+ VFD+    +   W AL  A   AG   E + + R  N    G+R D FT
Sbjct: 596  AKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVAR--NAFANGMRPDSFT 653

Query: 186  YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
               VL AC       + L  G+ +  +  + G    V + T  +D+Y + G +  A  VF
Sbjct: 654  AVRVLTACAR----IADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVF 709

Query: 246  SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
             +M  K+ V+W AM+  YA NG   EAL+LF  + M++  + P+   +   L AC  L A
Sbjct: 710  DKMRHKDAVAWGAMVGGYASNGHPREALDLF--LAMQAEGMKPDCYAVAGALSACTRLGA 767

Query: 306  LEQGKMIHGYILRRGLDSIL--PVV-SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
            L+ G+     I     D  L  PV+ +AL+ MYA+CG       VF  M K+D++ WN++
Sbjct: 768  LDLGRQA---IRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAM 824

Query: 363  ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
            I   G+ G+   A  +  +M   GV  +  +F+ +L +C+H GL+++G+  F +M K + 
Sbjct: 825  ILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYH 884

Query: 423  IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERAS 482
            I P +EHY CMVDLL RA  L+EA ++++D+ +     + G+LLG C+IH N ELAE   
Sbjct: 885  ISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVL 944

Query: 483  KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSF 542
            K+L  LEP N+GNYV+L+++Y+    W++  +++  ++A+G++KVP  S +E + K++ F
Sbjct: 945  KQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEF 1004

Query: 543  VSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAF 602
               D+ HP  +Q++  L  L  EMK  GY P T+VV++D++ EEKE  ++ HSEKLA+AF
Sbjct: 1005 RVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAF 1064

Query: 603  GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             L+ T  GETIR+TKNLR+C DCH+  K +S+  ++EI+VRD NRFH FR+G CSC DYW
Sbjct: 1065 NLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 144/385 (37%), Gaps = 50/385 (12%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS 95
           + L S T P  L+S     L+    K G L +A  V    P+P+   +  L+ +      
Sbjct: 577 LKLPSHTNPHVLTS-----LLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGD 631

Query: 96  LSDALNVHSHLTDNGFDQDP-----------------------------------FLVTK 120
           L +A++V  +   NG   D                                    F+ T 
Sbjct: 632 LREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATA 691

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
            +++Y     +  AR VFDK R +    W A+       G   E L+L+  M     G++
Sbjct: 692 AVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQ--AEGMK 749

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D +     L AC         L  G++    V    +     + T LIDMYA+ G  + 
Sbjct: 750 PDCYAVAGALSACTR----LGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVE 805

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF QM  K+++ W+AMI      G    A  L  +  ME   +  N  T + +L +C
Sbjct: 806 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQ--MEKSGVKLNDNTFIGLLCSC 863

Query: 301 AALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVS 358
                ++ G +  H       +   +     +V + +R G L+    + D M    + V 
Sbjct: 864 THTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVI 923

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMI 383
             +L+    +H     A  + K++I
Sbjct: 924 LGALLGGCKIHRNTELAEHVLKQLI 948


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 331/572 (57%), Gaps = 42/572 (7%)

Query: 111 FDQDPFLVT----KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FD+ P   T     L++ Y     + +AR VFDK   R +  W A+ R     G  EE  
Sbjct: 17  FDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAE 76

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI----V 222
            L+ RM         +  ++T +L           L++ G+   A   R  ++ +    V
Sbjct: 77  LLFWRMP------ERNVVSWTVMLGG---------LIEDGRVDEA---RQLFDMMPVKDV 118

Query: 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV-------------SWSAMIACYARNGMA 269
              T +ID     G ++ A  +F +M  +NVV             +WS MI  Y R G  
Sbjct: 119 VASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFE 178

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EAL LF   +M+   + P+  +++SVL  C +LA+L+ G+ +H  ++R   D  + V S
Sbjct: 179 LEALALFS--LMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSS 236

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
            L+TMY +CG L   + VFD    +D+V WNS+I+ Y  HG+G KA+++F +M    ++P
Sbjct: 237 VLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAP 296

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
             I+F+ VL ACS+ G V+EG  +FESM+ ++ + P  EHYACMVDLLGRA KL EA  +
Sbjct: 297 DEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNL 356

Query: 450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
           IE++ +E    VWG+LLG+CR H N++LAE A+K+L +LEP NAG Y+LL+++Y++   W
Sbjct: 357 IENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRW 416

Query: 510 DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF-HPQFEQLHALLINLSAEMKE 568
            +V  +++ + A+ L+K PG S IEV +K++ F       HP+ E +   L  L A ++E
Sbjct: 417 KDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLRE 476

Query: 569 KGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSF 628
            GY P    V++D+D EEK   +  HSEKLAVA+GL+   +G  IR+ KNLR+C D HS 
Sbjct: 477 AGYCPDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHST 536

Query: 629 TKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
            K I++   +EI++RD NRFHHF++G+CSC D
Sbjct: 537 IKLIAQVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 9/206 (4%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L  C    SL     VHS L  + FD D ++ + LI +Y     +  A+ VFD+   + 
Sbjct: 203 VLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKD 262

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           I +WN++       G GE+ LE++  M    + I  D  T+  VL AC  +      +K 
Sbjct: 263 IVMWNSIIAGYAQHGFGEKALEVFHDM--FSSSIAPDEITFIGVLSACSYT----GKVKE 316

Query: 206 GKEIHASVL-RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-AC 262
           G EI  S+  ++  +        ++D+  R G +  A  +   M V+ + + W A++ AC
Sbjct: 317 GLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGAC 376

Query: 263 YARNGMAFEALELFREMIMESHDLCP 288
                +    +   + + +E ++  P
Sbjct: 377 RTHKNLDLAEIAAKKLLQLEPNNAGP 402



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 42/208 (20%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM-------------------IMESH 284
           +F +M   N +SW+ +++ Y +NGM  EA ++F +M                   ++E  
Sbjct: 16  LFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEA 75

Query: 285 DLCPNSVTMVSVLQACAALAAL-EQGKMIHGYILRRGLDSILP---VVSALVTMYARC-- 338
           +L    +   +V+     L  L E G++       R L  ++P   VV++   +   C  
Sbjct: 76  ELLFWRMPERNVVSWTVMLGGLIEDGRVDEA----RQLFDMMPVKDVVASTNMIDGLCSE 131

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISS-------------YGVHGYGGKAIQIFKEMIYH 385
           G+L   + +FD M +R+VV+W S+IS              Y   G+  +A+ +F  M   
Sbjct: 132 GRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQRE 191

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKML 413
           GV PS  S +SVL  C     ++ G+ +
Sbjct: 192 GVRPSFPSVISVLSVCGSLASLDHGRQV 219


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/437 (45%), Positives = 287/437 (65%), Gaps = 2/437 (0%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
            T+I  YA  G V  A  +F     ++  SWS+MI+ YA++  + EALEL+REM   S  
Sbjct: 58  NTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAAS-- 115

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + P+ +T+VSV+ AC+ L AL  G  +H ++    ++  L + +AL+ MYA+CG +E  Q
Sbjct: 116 IIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQ 175

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VFD M ++DV +W+S+I     HG G +++ +F +MI  G+ P+ ++FV VL AC+H G
Sbjct: 176 RVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVG 235

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           LV EGK  F SM + H I P+VEHY CMVDLLGR+  +EEA ++I  +  EP   +W +L
Sbjct: 236 LVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRAL 295

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           LG+CRIH NVE+AE A  +L  L+P   G+YVLL+++YA A+ W+ V  +++ +    +Q
Sbjct: 296 LGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQ 355

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           ++PGRS IE   K++ FVS D  HP+ ++++ +L  +   +K+ GY P T +VL D+D +
Sbjct: 356 RIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQ 415

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
            KER +  HSEKLA+AF L+ T    TIRITKNLR CEDCHS  K IS   +++++VRD 
Sbjct: 416 SKERSLAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDR 475

Query: 646 NRFHHFRNGVCSCGDYW 662
           NRFHHF  G CSC DYW
Sbjct: 476 NRFHHFSEGQCSCKDYW 492



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 153/335 (45%), Gaps = 45/335 (13%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           +I+ Y+    V  AR +FD T  R  + W+++  A   + R +E LEL+R M+     I 
Sbjct: 60  MIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAAS--II 117

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D  T   V+ AC         L  G E+H  V  +     + + T LIDMYA+ G +  
Sbjct: 118 PDCITLVSVVSAC----SDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIES 173

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF +M  K+V +WS+MI   A +G+  E+L LF +MI E   + PN VT V VL AC
Sbjct: 174 AQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEG--MKPNGVTFVGVLIAC 231

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
             +  + +GK        R ++ +                         H  +  V  + 
Sbjct: 232 THVGLVSEGKKYF-----RSMNEV-------------------------HGIEPTVEHYG 261

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
            ++   G  G+  +A Q+ + M +    P  I + ++LGAC     VE  +   E+M K 
Sbjct: 262 CMVDLLGRSGHVEEARQLIRSMTFE---PDTIIWRALLGACRIHKNVEIAE---EAMAKL 315

Query: 421 HMIRPSVE-HYACMVDLLGRANKLEEAAKIIEDLR 454
            ++ P  + HY  + ++  +AN  E  A++ + +R
Sbjct: 316 RVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIR 350



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 9/177 (5%)

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
           +C+   +L+    VH  +  N  + D  L T LI++Y+    ++ A+ VFD+   + +  
Sbjct: 129 ACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQT 188

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           W+++   L   G G E L L+ +M     G++ +  T+  VL AC        L+  GK+
Sbjct: 189 WSSMIIGLANHGLGHESLSLFSKM--ISEGMKPNGVTFVGVLIACTH----VGLVSEGKK 242

Query: 209 IHASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-AC 262
              S+   HG    V     ++D+  R G V  A  +   M  + + + W A++ AC
Sbjct: 243 YFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGAC 299



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 33/169 (19%)

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG--------------- 373
           + ++  Y    ++   + VFD M  RD+VSWN++I  Y + G  G               
Sbjct: 27  NVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAF 86

Query: 374 ----------------KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
                           +A+++++EM    + P  I+ VSV+ ACS  G +  G  +   +
Sbjct: 87  SWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFV 146

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
            + + I   ++    ++D+  +   +E A ++  D   E   + W S++
Sbjct: 147 -ESNRIELDLKLGTALIDMYAKCGDIESAQRVF-DRMPEKDVQTWSSMI 193


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/484 (43%), Positives = 301/484 (62%), Gaps = 6/484 (1%)

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           I  D  T+  VLKA  A  C   +   GK IH  V++ G+   V+  T L+ +Y     +
Sbjct: 85  ILPDSSTFPAVLKA-TAQLCDTGV---GKMIHGIVIQMGFICDVYTSTALVHLYCTCLSI 140

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
             A  +F +M  +N V+W+A+I  Y  N    +A++ FR M+ +     P+  T+V VL 
Sbjct: 141 SDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQ--PSERTVVVVLS 198

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           AC+ L A  QGK IH +I    L   + V +AL+ MYA+CG +   + VF+ + +++V +
Sbjct: 199 ACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYT 258

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           WN LIS Y ++G G  A+Q F  M+     P  ++F+ VL AC H GLV EG+  F SM+
Sbjct: 259 WNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMK 318

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
           ++  ++P +EHY CMVDLLGRA  LEEA ++I+ + IEP P +W +LL +CR+H N +L 
Sbjct: 319 QQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLG 378

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRK 538
           E   KRL ELEP N  NYVLL+++Y+    W EV +++ ++  RG++KVPG S IE+   
Sbjct: 379 EYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNV 438

Query: 539 MYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKL 598
           +Y FV+ ++  P+FE ++  L NL  ++KE GYV  T + LYD++ EEKE  V+ HSEKL
Sbjct: 439 VYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKL 498

Query: 599 AVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSC 658
           A+AFGL+N+    T+RI KNLR+C DCH F K +S    + I+VRD NRFHHF  G CSC
Sbjct: 499 ALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSC 558

Query: 659 GDYW 662
            DYW
Sbjct: 559 RDYW 562



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 10/284 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +H  +   GF  D +  T L+++Y    S+ DA  +FD+   R    WNAL    T   +
Sbjct: 111 IHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRK 170

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
             + ++ +R M     G +    T   VL AC            GK IH  +  +     
Sbjct: 171 FVKAIDAFRGM--LADGAQPSERTVVVVLSAC----SHLGAFNQGKWIHEFIYHNRLRLN 224

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V + T LIDMYA+ G V     VF ++  KNV +W+ +I+ YA NG    AL+ F  M+M
Sbjct: 225 VFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLM 284

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGK 340
           E+    P+ VT + VL AC     + +G+     + ++ GL   +     +V +  R G 
Sbjct: 285 ENFK--PDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGL 342

Query: 341 LELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
           LE    +   M  + D + W +L+ +  VHG       I K +I
Sbjct: 343 LEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI 386



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 129/280 (46%), Gaps = 23/280 (8%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           K I  SV R+G+  I  I +             Y G + SQ         ++MI  Y   
Sbjct: 27  KLIDDSVSRNGFESIARIFSK------------YRGSINSQQC-------NSMIRTYLDL 67

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
                +L +F   +M    + P+S T  +VL+A A L     GKMIHG +++ G    + 
Sbjct: 68  NKHLNSLYIF--ALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVY 125

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
             +ALV +Y  C  +     +FD M +R+ V+WN+LI+ Y  +    KAI  F+ M+  G
Sbjct: 126 TSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADG 185

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
             PS  + V VL ACSH G   +GK + E +    + R +V     ++D+  +   + E 
Sbjct: 186 AQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRL-RLNVFVGTALIDMYAKCGAVYEV 244

Query: 447 AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF 486
            K+ E++R E     W  L+    ++   + A +A  R+ 
Sbjct: 245 EKVFEEIR-EKNVYTWNVLISGYAMNGQGDAALQAFSRML 283



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 128/311 (41%), Gaps = 59/311 (18%)

Query: 17  YHTNSIAHLPPKPSSVCCCVSL-NSSTTPTSLSSRNK---NELIQSLCKQGNLRQALD-- 70
           Y + ++ HL       C C+S+ ++S     +  RN    N LI          +A+D  
Sbjct: 125 YTSTALVHL------YCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAF 178

Query: 71  --VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
             +L+    P++ T  ++L +C+H  + +    +H  +  N    + F+ T LI++Y+  
Sbjct: 179 RGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKC 238

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
            +V +   VF++ R + +Y WN L     + G+G+  L+ + RM       + D  T+  
Sbjct: 239 GAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRM--LMENFKPDEVTFLG 296

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           VL AC    C   L+  G+                     + M  +FG            
Sbjct: 297 VLCAC----CHQGLVTEGR------------------WQFMSMKQQFG------------ 322

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
               +  +  M+    R G+  EALEL + M +E     P+ +   ++L AC      + 
Sbjct: 323 LQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIE-----PDPIIWRALLCACRVHGNTKL 377

Query: 309 GKMIHGYILRR 319
           G+    YI++R
Sbjct: 378 GE----YIIKR 384


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/600 (37%), Positives = 346/600 (57%), Gaps = 15/600 (2%)

Query: 67   QALDVLSIEPNPTQHTYELLLLSCTH-HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY 125
             AL V  + PNP+  T  + L S +   + L     +H+         +P ++T L+++Y
Sbjct: 512  HALRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLY 571

Query: 126  SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
            +    +  A+ VFD+    +   W AL  A   AG   E + + R  N    G+R D FT
Sbjct: 572  AKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVAR--NAFANGMRPDSFT 629

Query: 186  YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
               VL AC       + L  G+ +  +  + G    V + T  +D+Y + G +  A  VF
Sbjct: 630  AVRVLTACAR----IADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVF 685

Query: 246  SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
             +M  K+ V+W AM+  YA NG   EAL+LF  + M++  + P+   +   L AC  L A
Sbjct: 686  DKMRHKDAVAWGAMVGGYASNGHPREALDLF--LAMQAEGMKPDCYAVAGALSACTRLGA 743

Query: 306  LEQGKMIHGYILRRGLDSIL--PVV-SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
            L+ G+     I     D  L  PV+ +AL+ MYA+CG       VF  M K+D++ WN++
Sbjct: 744  LDLGRQA---IRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAM 800

Query: 363  ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
            I   G+ G+   A  +  +M   GV  +  +F+ +L +C+H GL+++G+  F +M K + 
Sbjct: 801  ILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYH 860

Query: 423  IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERAS 482
            I P +EHY CMVDLL RA  L+EA ++++D+ +     + G+LLG C+IH N ELAE   
Sbjct: 861  ISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVL 920

Query: 483  KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSF 542
            K+L  LEP N+GNYV+L+++Y+    W++  +++  ++A+G++KVP  S +E + K++ F
Sbjct: 921  KQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEF 980

Query: 543  VSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAF 602
               D+ HP  +Q++  L  L  EMK  GY P T+VV++D++ EEKE  ++ HSEKLA+AF
Sbjct: 981  RVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAF 1040

Query: 603  GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             L+ T  GETIR+TKNLR+C DCH+  K +S+  ++EI+VRD NRFH FR+G CSC DYW
Sbjct: 1041 NLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 144/385 (37%), Gaps = 50/385 (12%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS 95
           + L S T P  L+S     L+    K G L +A  V    P+P+   +  L+ +      
Sbjct: 553 LKLPSHTNPHVLTS-----LLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGD 607

Query: 96  LSDALNVHSHLTDNGFDQDP-----------------------------------FLVTK 120
           L +A++V  +   NG   D                                    F+ T 
Sbjct: 608 LREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATA 667

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
            +++Y     +  AR VFDK R +    W A+       G   E L+L+  M     G++
Sbjct: 668 AVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQ--AEGMK 725

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D +     L AC         L  G++    V    +     + T LIDMYA+ G  + 
Sbjct: 726 PDCYAVAGALSACTR----LGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVE 781

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF QM  K+++ W+AMI      G    A  L  +  ME   +  N  T + +L +C
Sbjct: 782 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQ--MEKSGVKLNDNTFIGLLCSC 839

Query: 301 AALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVS 358
                ++ G +  H       +   +     +V + +R G L+    + D M    + V 
Sbjct: 840 THTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVI 899

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMI 383
             +L+    +H     A  + K++I
Sbjct: 900 LGALLGGCKIHRNTELAEHVLKQLI 924


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/484 (43%), Positives = 301/484 (62%), Gaps = 6/484 (1%)

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           I  D  T+  VLKA  A  C   +   GK IH  V++ G+   V+  T L+ +Y     +
Sbjct: 85  ILPDSSTFPAVLKA-TAQLCDTGV---GKMIHGIVIQMGFICDVYTSTALVHLYCTCLSI 140

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
             A  +F +M  +N V+W+A+I  Y  N    +A++ FR M+ +     P+  T+V VL 
Sbjct: 141 SDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQ--PSERTVVVVLS 198

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           AC+ L A  QGK IH +I    L   + V +AL+ MYA+CG +   + VF+ + +++V +
Sbjct: 199 ACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYT 258

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           WN LIS Y ++G G  A+Q F  M+     P  ++F+ VL AC H GLV EG+  F SM+
Sbjct: 259 WNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMK 318

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
           ++  ++P +EHY CMVDLLGRA  LEEA ++I+ + IEP P +W +LL +CR+H N +L 
Sbjct: 319 QQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLG 378

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRK 538
           E   KRL ELEP N  NYVLL+++Y+    W EV +++ ++  RG++KVPG S IE+   
Sbjct: 379 EYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNV 438

Query: 539 MYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKL 598
           +Y FV+ ++  P+FE ++  L NL  ++KE GYV  T + LYD++ EEKE  V+ HSEKL
Sbjct: 439 VYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKL 498

Query: 599 AVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSC 658
           A+AFGL+N+    T+RI KNLR+C DCH F K +S    + I+VRD NRFHHF  G CSC
Sbjct: 499 ALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSC 558

Query: 659 GDYW 662
            DYW
Sbjct: 559 RDYW 562



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 10/284 (3%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +H  +   GF  D +  T L+++Y    S+ DA  +FD+   R    WNAL    T   +
Sbjct: 111 IHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRK 170

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
             + ++ +R M     G +    T   VL AC            GK IH  +  +     
Sbjct: 171 FVKAIDAFRGM--LADGAQPSERTVVVVLSAC----SHLGAFNQGKWIHEFIYHNRLRLN 224

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V + T LIDMYA+ G V     VF ++  KNV +W+ +I+ YA NG    AL+ F  M+M
Sbjct: 225 VFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLM 284

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGK 340
           E+    P+ VT + VL AC     + +G+     + ++ GL   +     +V +  R G 
Sbjct: 285 ENFK--PDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGL 342

Query: 341 LELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
           LE    +   M  + D + W +L+ +  VHG       I K +I
Sbjct: 343 LEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI 386



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 129/280 (46%), Gaps = 23/280 (8%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           K I  SV R+G+  I  I +             Y G + SQ         ++MI  Y   
Sbjct: 27  KLIDDSVSRNGFESIARIFSK------------YRGSINSQQC-------NSMIRTYLDL 67

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
                +L +F   +M    + P+S T  +VL+A A L     GKMIHG +++ G    + 
Sbjct: 68  NKHLNSLYIF--ALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVY 125

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
             +ALV +Y  C  +     +FD M +R+ V+WN+LI+ Y  +    KAI  F+ M+  G
Sbjct: 126 TSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADG 185

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
             PS  + V VL ACSH G   +GK + E +    + R +V     ++D+  +   + E 
Sbjct: 186 AQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRL-RLNVFVGTALIDMYAKCGAVYEV 244

Query: 447 AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF 486
            K+ E++R E     W  L+    ++   + A +A  R+ 
Sbjct: 245 EKVFEEIR-EKNVYTWNVLISGYAMNGQGDAALQAFSRML 283



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 128/311 (41%), Gaps = 59/311 (18%)

Query: 17  YHTNSIAHLPPKPSSVCCCVSL-NSSTTPTSLSSRNK---NELIQSLCKQGNLRQALD-- 70
           Y + ++ HL       C C+S+ ++S     +  RN    N LI          +A+D  
Sbjct: 125 YTSTALVHL------YCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAF 178

Query: 71  --VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
             +L+    P++ T  ++L +C+H  + +    +H  +  N    + F+ T LI++Y+  
Sbjct: 179 RGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKC 238

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
            +V +   VF++ R + +Y WN L     + G+G+  L+ + RM       + D  T+  
Sbjct: 239 GAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRM--LMENFKPDEVTFLG 296

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           VL AC    C   L+  G+                     + M  +FG            
Sbjct: 297 VLCAC----CHQGLVTEGR------------------WQFMSMKQQFG------------ 322

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
               +  +  M+    R G+  EALEL + M +E     P+ +   ++L AC      + 
Sbjct: 323 LQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIE-----PDPIIWRALLCACRVHGNTKL 377

Query: 309 GKMIHGYILRR 319
           G+    YI++R
Sbjct: 378 GE----YIIKR 384


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/570 (38%), Positives = 330/570 (57%), Gaps = 22/570 (3%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            +H+     G   D F+     ++Y      DDAR +FD+   R +  WNA        G
Sbjct: 129 QIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDG 188

Query: 161 RGEEVLELY---RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
           R  E +E +   RR++G    I     T+   L AC      +  L  G ++H  VLR G
Sbjct: 189 RPREAIEAFIEFRRIDGHPNSI-----TFCAFLNAC----SDWLHLNLGMQLHGLVLRSG 239

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF- 276
           ++  V +   LID Y +   +  +  +F++M  KN VSW +++A Y +N    +A  L+ 
Sbjct: 240 FDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYL 299

Query: 277 --REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
             R+ I+E+ D       + SVL ACA +A LE G+ IH + ++  ++  + V SALV M
Sbjct: 300 RSRKDIVETSDF-----MISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDM 354

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP--I 392
           Y +CG +E  +  FD M ++++V+ NSLI  Y   G    A+ +F+EM   G  P+P  +
Sbjct: 355 YGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYM 414

Query: 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           +FVS+L ACS AG VE G  +F+SMR  + I P  EHY+C+VD+LGRA  +E A + I+ 
Sbjct: 415 TFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKK 474

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
           + I+P   VWG+L  +CR+H   +L   A++ LF+L+P ++GN+VLL++ +AAA  W E 
Sbjct: 475 MPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEA 534

Query: 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV 572
             V+  L+  G++K  G S I VK ++++F + D  H   +++   L  L  EM+  GY 
Sbjct: 535 NTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYK 594

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
           P  K+ LYDL+ EEK   V  HSEKLA+AFGL++      IRITKNLR+C DCHSF KF+
Sbjct: 595 PDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFV 654

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           S    +EI+VRD NRFH F++G+CSC DYW
Sbjct: 655 SGSVKREIIVRDNNRFHRFKDGICSCKDYW 684



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 187/415 (45%), Gaps = 26/415 (6%)

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
           PFL   LIN+YS  D  + AR V   T  R +  W +L   L   G     L  +  M  
Sbjct: 42  PFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMR- 100

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
              G+  + FT+    KA VAS     L   GK+IHA  ++ G    V +  +  DMY +
Sbjct: 101 -REGVVPNDFTFPCAFKA-VAS---LRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCK 155

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
                 A  +F ++  +N+ +W+A I+    +G   EA+E F E      D  PNS+T  
Sbjct: 156 TRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIE--FRRIDGHPNSITFC 213

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           + L AC+    L  G  +HG +LR G D+ + V + L+  Y +C ++   + +F  M  +
Sbjct: 214 AFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTK 273

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           + VSW SL+++Y  +    KA  ++       V  S     SVL AC+    +E G+ + 
Sbjct: 274 NAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSI- 332

Query: 415 ESMRKEHMIRPSVEHY----ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
                 H ++  VE      + +VD+ G+   +E++ +  +++  E       SL+G   
Sbjct: 333 ----HAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTRNSLIGGYA 387

Query: 471 IHCNVELAERASKRLF-ELEPTNAG---NYVLLADVYAAADMWDEVKRVKRLLEA 521
               V++A      LF E+ P   G   NY+    + +A      V+   ++ ++
Sbjct: 388 HQGQVDMA----LALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDS 438



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 143/324 (44%), Gaps = 12/324 (3%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N  I +    G  R+A++       I+ +P   T+   L +C+    L+  + +H  +  
Sbjct: 178 NAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLR 237

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GFD D  +   LI+ Y     +  +  +F +   +    W +L  A       E+   L
Sbjct: 238 SGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVL 297

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           Y R       + +  F  + VL AC     G + L+ G+ IHA  ++      + + + L
Sbjct: 298 YLR--SRKDIVETSDFMISSVLSACA----GMAGLELGRSIHAHAVKACVERTIFVGSAL 351

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +DMY + GC+  +   F +M  KN+V+ +++I  YA  G    AL LF EM        P
Sbjct: 352 VDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTP 411

Query: 289 NSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           N +T VS+L AC+   A+E G K+        G++      S +V M  R G +E     
Sbjct: 412 NYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEF 471

Query: 348 FDHMDKRDVVS-WNSLISSYGVHG 370
              M  +  +S W +L ++  +HG
Sbjct: 472 IKKMPIQPTISVWGALQNACRMHG 495



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 3/203 (1%)

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTT-LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
           S ++ G+ +HA +++   +     +   LI+MY++      A  V      +NVVSW+++
Sbjct: 20  SSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSL 79

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I+  A+NG    AL  F EM  E   + PN  T     +A A+L     GK IH   ++ 
Sbjct: 80  ISGLAQNGHFSTALVEFFEMRREG--VVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKC 137

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           G    + V  +   MY +    +  + +FD + +R++ +WN+ IS+    G   +AI+ F
Sbjct: 138 GRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAF 197

Query: 380 KEMIYHGVSPSPISFVSVLGACS 402
            E       P+ I+F + L ACS
Sbjct: 198 IEFRRIDGHPNSITFCAFLNACS 220



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILP--VVSALVTMYARCGKLELGQCVFDHMDK 353
           +L+   + +++  G+++H  I++  LDS  P  + + L+ MY++    E  + V      
Sbjct: 12  LLKNAISASSMRLGRVVHARIVKT-LDSPPPPFLANYLINMYSKLDHPESARLVLRLTPA 70

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           R+VVSW SLIS    +G+   A+  F EM   GV P+  +F     A +   L   GK +
Sbjct: 71  RNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQI 130


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/606 (34%), Positives = 341/606 (56%), Gaps = 35/606 (5%)

Query: 87  LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI 146
           L +C  H S      +H H+   G DQ   L   LIN+Y     + DA ++F++   R  
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206
             W ++  A   A      L ++  M     G++ D + +  ++KAC         +K G
Sbjct: 70  ISWASILTANNQANLPHLTLSMFPAMFKQ-DGLQPDHYVFACLVKACAI----LGAMKQG 124

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           K++HA+ +    +    + ++L+DMYA+ G       VF  ++ KN +SW+AMI+ YA++
Sbjct: 125 KQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQS 184

Query: 267 GMAFEALELFREM--------------IMESHDLCP----------------NSVTMVSV 296
           G   +A++LF++M              +++S +                   +   + S+
Sbjct: 185 GRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSI 244

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           + A A LA L  GK IH  ++  G +S L V +ALV MYA+C  +   + +F  M +RD+
Sbjct: 245 IGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDI 304

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           VSW S+I     HG   +A+ ++  M+  G+ P+ ++FV ++ ACSH GLV +G+  F S
Sbjct: 305 VSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNS 364

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE 476
           M K++ I PS++HY C++DLL R+  LEEA  +I+ +  +P    W +LL +C  H N  
Sbjct: 365 MIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTL 424

Query: 477 LAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVK 536
           +  R +  L  L+P +   Y+LL+++YA+A MW+ V +V+RL+ A  ++K PG S I + 
Sbjct: 425 IGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLG 484

Query: 537 RKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSE 596
           ++   F++ +  HP  E++  LL  L AEMK++GY+P T  VL+DL+ +EKER +  HSE
Sbjct: 485 KESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSE 544

Query: 597 KLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVC 656
           +LAVA+GL+    G  + I KNLR+C DCH+  KFIS    +EI+VRD NR+HHF++G C
Sbjct: 545 RLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKC 604

Query: 657 SCGDYW 662
           SC ++W
Sbjct: 605 SCNNFW 610



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 150/321 (46%), Gaps = 30/321 (9%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P  + +  L+ +C    ++     VH+    +    D  + + L+++Y+     D  R 
Sbjct: 102 QPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRV 161

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM-------------NGTGTGIRSDR 183
           VFD    +    W A+      +GR  + ++L+++M                 +G   D 
Sbjct: 162 VFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDS 221

Query: 184 FTY-------------TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           F                ++L + + +S   ++L  GK+IH  V+  GY   + +   L+D
Sbjct: 222 FYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVD 281

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MYA+   V+ A  +F +M  +++VSW+++I   A++G+A EAL L+  M+  S  L PN 
Sbjct: 282 MYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRML--STGLKPNE 339

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFD 349
           VT V ++ AC+ +  + +G+     +++  G++  L   + L+ + +R G LE  + +  
Sbjct: 340 VTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIK 399

Query: 350 HMD-KRDVVSWNSLISSYGVH 369
            M  K D  +W +L+S+   H
Sbjct: 400 AMPFKPDEATWAALLSACNHH 420



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           +V  LQACA   +   GK +H +I++ G+D    + + L+ MY +CG ++    +F+ + 
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGK 411
            RD +SW S++++          + +F  M    G+ P    F  ++ AC+  G +++GK
Sbjct: 66  HRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGK 125

Query: 412 -----MLFESMRKEHMIRPS-VEHYA-CMVDLLGR 439
                 +   +  + +++ S V+ YA C +  +GR
Sbjct: 126 QVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGR 160


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/587 (35%), Positives = 346/587 (58%), Gaps = 39/587 (6%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDS--VDDARHVFDKTRRRTIYVWNALFRALTL 158
            +H+ L  +G  +D  LV + +   +  D   +D A  + D++ + T++  N++ RA   
Sbjct: 32  QIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDRSDKPTLFALNSMIRAHCK 91

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +   E+  + Y R+  +G G++ D +T  ++++AC     G  + + G ++H   +R G+
Sbjct: 92  SPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACT----GLGMRETGLQVHGMTIRRGF 147

Query: 219 NGIVHIMTTLIDMYARFGC----------VMYAGFV---------------------FSQ 247
           +   H+ T LI +YA  GC          V Y  FV                     F  
Sbjct: 148 DNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEG 207

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M  K+ ++W+AMI+ YA+ G + EAL LF  M +E   +  N V+M+SVL AC  L AL+
Sbjct: 208 MPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKV--NGVSMISVLSACTQLGALD 265

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
           QG+  H YI R  +   + + + LV +YA+CG ++    VF  M++++V +W+S ++   
Sbjct: 266 QGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLA 325

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           ++G+G K +++F  M   GV+P+ ++FVSVL  CS  G V+EG+  F+SMR E  I P +
Sbjct: 326 MNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQL 385

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           +HY C+VDL  RA +LE+A  II+ + ++    VW SLL + R++ N+EL   ASK++ E
Sbjct: 386 DHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLE 445

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           LE +N G YVLL+++YA +D WD V  V++ ++++G++K PG S +EV  +++ F   D+
Sbjct: 446 LETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDK 505

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
            HP++ ++ A+  ++S  ++  GY   T  V++D+D EEKE  +  HSEK A+AFG+++ 
Sbjct: 506 SHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSL 565

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
                IRI KNLR+C DCH  +  ISK  N+EI+VRD NRFHHF++G
Sbjct: 566 KADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 612



 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/506 (37%), Positives = 315/506 (62%), Gaps = 9/506 (1%)

Query: 160  GRG--EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
            GRG   +  E+  RM  +  G R +  T+  ++ ACV         + G  IH  V++ G
Sbjct: 612  GRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNK----EEGVCIHGLVMKSG 667

Query: 218  YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
                V ++  L+++Y + G ++ +  +F  ++VKN+VSW+ MI  + +NG+A E L  F 
Sbjct: 668  VLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFN 727

Query: 278  EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
              +     L P+  T ++VL+ C  +  +   + IHG I+  G ++   + +AL+ +YA+
Sbjct: 728  --MSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAK 785

Query: 338  CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
             G+LE    VF  +   D ++W +++++Y  HGYG  AI+ F+ M+++G+SP  ++F  +
Sbjct: 786  LGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHL 845

Query: 398  LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
            L ACSH+GLVEEG+  FE+M K + I P ++HY+CMVDL+GR+  L++A  +I+++ +EP
Sbjct: 846  LNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEP 905

Query: 458  GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
               VWG+LLG+CR++ + +L  +A+KRLFELEP +  NY++L+++Y+A+ +W +  R++ 
Sbjct: 906  SSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRN 965

Query: 518  LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK-EKGYVPQTK 576
            L++ +GL +  G S IE   K++ FV  D  HP+ E++   L  +  +MK E G+  +T+
Sbjct: 966  LMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTE 1025

Query: 577  VVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFA 636
             VL+D+D + KE ++  HSEK+A+AFGL+  S  E I I KNLR+C DCH   K IS   
Sbjct: 1026 FVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIE 1085

Query: 637  NKEILVRDVNRFHHFRNGVCSCGDYW 662
             + I++RD  RFHHF  G CSC DYW
Sbjct: 1086 KRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 156/366 (42%), Gaps = 52/366 (14%)

Query: 38  LNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSI------EPNPTQHTYELLLLSCT 91
           L+ S  PT  +    N +I++ CK     ++ D  S          P  +T   L+ +CT
Sbjct: 71  LDRSDKPTLFAL---NSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACT 127

Query: 92  HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD------------------ 133
                   L VH      GFD DP + T LI++Y+    +D                   
Sbjct: 128 GLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTA 187

Query: 134 -------------ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
                        AR +F+    +    WNA+       G   E L L+  M     G++
Sbjct: 188 MVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQ--LEGVK 245

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            +  +   VL AC         L  G+  H+ + R+     V + TTL+D+YA+ G +  
Sbjct: 246 VNGVSMISVLSACTQ----LGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDK 301

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF  M  KNV +WS+ +   A NG   + L+LF   +M+   + PN+VT VSVL+ C
Sbjct: 302 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFS--LMKQDGVTPNAVTFVSVLRGC 359

Query: 301 AALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVV 357
           + +  +++G+  H   +R   G++  L     LV +YAR G+LE    +   M  K    
Sbjct: 360 SVVGFVDEGQK-HFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAA 418

Query: 358 SWNSLI 363
            W+SL+
Sbjct: 419 VWSSLL 424



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 141/300 (47%), Gaps = 15/300 (5%)

Query: 50  RNKNELIQSLCKQGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVH 103
           R++N        +G L +  +VLS      +   P + T+  ++ +C H  +  + + +H
Sbjct: 601 RDRNRFHHFKDGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIH 660

Query: 104 SHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE 163
             +  +G  ++  +V  L+N+Y     +  +  +F+    + +  WN +       G  E
Sbjct: 661 GLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAE 720

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           E L  +        G++ D+ T+  VL+ C     G   L  G  IH  ++  G+N    
Sbjct: 721 EGLAYFNM--SRWVGLKPDQATFLAVLRVC--EDIGVVRLSQG--IHGLIMFCGFNANTC 774

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           I T L+D+YA+ G +  +  VF ++   + ++W+AM+A YA +G   +A++ F  M+   
Sbjct: 775 ITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMV--H 832

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLE 342
           + L P+ VT   +L AC+    +E+G+     + +R  ++  L   S +V +  R G L+
Sbjct: 833 YGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQ 892



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 51/228 (22%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P Q T+  +L  C     +  +  +H  +   GF+ +  + T L+++Y+    ++D+  V
Sbjct: 736 PDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTV 795

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F +        W A+  A    G G + ++ +  M     G+  D  T+T++L AC  S 
Sbjct: 796 FLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELM--VHYGLSPDHVTFTHLLNACSHS- 852

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS-- 255
               L++ G+                                   + F  M+ +  +   
Sbjct: 853 ---GLVEEGR-----------------------------------YYFETMSKRYRIEPR 874

Query: 256 ---WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
              +S M+    R+G+  +A  L +EM ME     P+S    ++L AC
Sbjct: 875 LDHYSCMVDLMGRSGLLQDAYGLIKEMPME-----PSSGVWGALLGAC 917


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/486 (42%), Positives = 301/486 (61%), Gaps = 11/486 (2%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           GI+ + FTY+ +L A      G S      E+HA  ++  Y     + T L+D Y + G 
Sbjct: 5   GIKPNDFTYSTILTA----QPGVSPF----EMHAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           V  A  VF ++  K++V+WSAMI  YA+ G    A+ +F +M  E   + PN  T   ++
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEK--IKPNEYTFSGII 114

Query: 298 QACAA-LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
            ACAA  A +EQGK +H + ++   ++ L V SAL+TMY++ G +E    VF    +RD+
Sbjct: 115 NACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDL 174

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           VSWNS+IS Y  HGYG KA+++F+EM    +    ++F+ V+ AC+H GL  EG+  F+ 
Sbjct: 175 VSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDI 234

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE 476
           M K+H I P +EHY+CMVDL GRA  L +A +II ++       VW +LL +  IH N+E
Sbjct: 235 MVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLE 294

Query: 477 LAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVK 536
           + + A+ +L  L+P N  +YVLL ++YA+   W E  +V++L+E + ++KV G S IEVK
Sbjct: 295 VGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEVK 354

Query: 537 RKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSE 596
            K Y+F++ D  HP   Q++A L  LS ++K  GY P T  V  D+D E KE I+  HSE
Sbjct: 355 NKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQHSE 414

Query: 597 KLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVC 656
           +LA+AFGLI T  G  ++I KNLR+C DCHS  K IS    ++I+VRD NRFHHF+ G+C
Sbjct: 415 RLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGGLC 474

Query: 657 SCGDYW 662
           SCGDYW
Sbjct: 475 SCGDYW 480



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 145/294 (49%), Gaps = 13/294 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   TY  +L   T    +S    +H+      + + P + T L++ Y    +VD+A  V
Sbjct: 8   PNDFTYSTIL---TAQPGVS-PFEMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKV 63

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F +   + I  W+A+       G  E  + ++ +M      I+ + +T++ ++ AC A +
Sbjct: 64  FQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQM--AKEKIKPNEYTFSGIINACAAPT 121

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G   ++ GK++HA  ++  +N  + + + L+ MY++ G +  A  VF +   +++VSW+
Sbjct: 122 AG---VEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWN 178

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           ++I+ YA++G   +ALE+F E  M+  +L  + VT + V+ AC       +G+     ++
Sbjct: 179 SIISGYAQHGYGRKALEVFEE--MQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMV 236

Query: 318 R-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
           +   ++  +   S +V +Y R G L     + + M        W +L+++  +H
Sbjct: 237 KDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIH 290



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 94/212 (44%), Gaps = 15/212 (7%)

Query: 62  QGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS-LSDALNVHSHLTDNGFDQDPFLVTK 120
           +G +R  + +   +  P ++T+  ++ +C    + +     +H+    + F+    + + 
Sbjct: 89  EGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSA 148

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           L+ +YS    ++ A  VF + R R +  WN++       G G + LE++  M      + 
Sbjct: 149 LLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQ--RQNLE 206

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARFGCVM 239
            D  T+  V+ AC  +     L   G+     +++ H     +   + ++D+Y R G ++
Sbjct: 207 MDGVTFIGVISACTHT----GLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLV 262

Query: 240 YAGFVFSQM---AVKNVVSWSAMIA--CYARN 266
            A  + ++M   A  NV  W  ++A  C  RN
Sbjct: 263 KAMEIINEMPFPASANV--WRTLLAASCIHRN 292


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/615 (34%), Positives = 358/615 (58%), Gaps = 13/615 (2%)

Query: 53  NELIQSLCKQG----NLRQALDVLSIEPNPTQHTYELLLLSCTH-HNSLSDALNVHSHLT 107
           N +I    + G    +LR  +D+L     P Q T   +L +C+    S      VH+   
Sbjct: 367 NTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCAL 426

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
             G   D F+ T LI+VYS    +++A  +F       +  WNA+    T++    E L 
Sbjct: 427 KAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALR 486

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+  M+  G   ++D+ T+     A  A+ C    L+ GK+IHA V++  ++  + +++ 
Sbjct: 487 LFSLMHERGE--KADQITFA---NAAKAAGC-LVRLQQGKQIHAVVIKMRFHYDLFVISG 540

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           ++DMY + G +  A  VF+Q+   + V+W+ +I+    NG   +AL  + +M +    + 
Sbjct: 541 ILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAG--VQ 598

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+  T  ++++AC+ L ALEQGK IH  I++        V+++LV MYA+CG +E    +
Sbjct: 599 PDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGL 658

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F  M+ R V  WN++I     HG   +A+  F EM   GV+P  ++F+ VL ACSH+GL 
Sbjct: 659 FRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLT 718

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
            +    F+SM+K + + P +EHY+C+VD L RA  ++EA K++  +  E    ++ +LL 
Sbjct: 719 SDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLN 778

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           +CR+  + E  ER +++LF ++P+++  YVLL+++YAAA+ W+     + +++   ++K 
Sbjct: 779 ACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKE 838

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           PG S I++K K++ FV+ D  H + + ++  +  +   +KE+GYVP T+  L D++ E+K
Sbjct: 839 PGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDK 898

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
           E  +  HSEKLA+A+GL+ T    T+R+ KNLR+C DCH+  K+IS    +EI++RD NR
Sbjct: 899 ESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANR 958

Query: 648 FHHFRNGVCSCGDYW 662
           FHHFR+G+CSCGDYW
Sbjct: 959 FHHFRSGICSCGDYW 973



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 190/398 (47%), Gaps = 11/398 (2%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           TY ++L      N L     +H  +   G+DQ   +    IN+Y    SV+ AR +F + 
Sbjct: 299 TYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQM 358

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
           +   +  WN +      +G  E  L L+  ++   +G+  D+FT T VL+AC +    + 
Sbjct: 359 KEVDLISWNTVISGCARSGLEECSLRLF--IDLLRSGLLPDQFTITSVLRACSSLEESYC 416

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
           +   G+++H   L+ G      + T LID+Y++ G +  A  +F      ++ SW+AM+ 
Sbjct: 417 V---GRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMH 473

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            +  +    EAL LF   +M       + +T  +  +A   L  L+QGK IH  +++   
Sbjct: 474 GFTVSDNYREALRLFS--LMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRF 531

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
              L V+S ++ MY +CG+++  + VF+ +   D V+W ++IS    +G   +A+  + +
Sbjct: 532 HYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQ 591

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH-MIRPSVEHYACMVDLLGRA 440
           M   GV P   +F +++ ACS    +E+GK +  ++ K +    P V     +VD+  + 
Sbjct: 592 MRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV--MTSLVDMYAKC 649

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
             +E+A  +   +       +W +++     H N E A
Sbjct: 650 GNIEDAYGLFRRMNTR-SVALWNAMIVGLAQHGNAEEA 686



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 176/372 (47%), Gaps = 43/372 (11%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           T+HT   L   C  + S S +  +  +    G   D F+   L+N+Y+ F  + +AR +F
Sbjct: 121 TRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLF 180

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           D+   R + +WN + +A    G G+EVL L+   + +G  +R D  +   +L   V    
Sbjct: 181 DRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSG--LRPDCVSVRTILMG-VGKKT 237

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
            F   +  +++ A                            YA  +F      +V  W+ 
Sbjct: 238 VFE--RELEQVRA----------------------------YATKLFVCDDDSDVTVWNK 267

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
            ++ Y + G  +EA++ FR+MI +S   C +S+T + +L   A+L  LE GK IHG ++R
Sbjct: 268 TLSSYLQAGEGWEAVDCFRDMI-KSRVPC-DSLTYIVILSVVASLNHLELGKQIHGAVVR 325

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
            G D  + V ++ + MY + G +   + +F  M + D++SWN++IS     G    ++++
Sbjct: 326 FGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRL 385

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEE----GKMLFESMRKEHMIRPSVEHYACMV 434
           F +++  G+ P   +  SVL ACS    +EE    G+ +     K  ++  S    A ++
Sbjct: 386 FIDLLRSGLLPDQFTITSVLRACSS---LEESYCVGRQVHTCALKAGIVLDSFVSTA-LI 441

Query: 435 DLLGRANKLEEA 446
           D+  +  K+EEA
Sbjct: 442 DVYSKGGKMEEA 453



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 170/332 (51%), Gaps = 25/332 (7%)

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           + VWN    +   AG G E ++ +R M    + +  D  TY  +L + VAS    + L+ 
Sbjct: 262 VTVWNKTLSSYLQAGEGWEAVDCFRDM--IKSRVPCDSLTYIVIL-SVVAS---LNHLEL 315

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK+IH +V+R G++  V +  + I+MY + G V YA  +F QM   +++SW+ +I+  AR
Sbjct: 316 GKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCAR 375

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL-AALEQGKMIHGYILRRG--LD 322
           +G+   +L LF +++     L P+  T+ SVL+AC++L  +   G+ +H   L+ G  LD
Sbjct: 376 SGLEECSLRLFIDLLRSG--LLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLD 433

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
           S   V +AL+ +Y++ GK+E  + +F + D  D+ SWN+++  + V     +A+++F  M
Sbjct: 434 SF--VSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLM 491

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV-----DLL 437
              G     I+F +   A      +++GK +   + K         HY   V     D+ 
Sbjct: 492 HERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRF------HYDLFVISGILDMY 545

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
            +  +++ A K+   +   P    W +++  C
Sbjct: 546 LKCGEMKSARKVFNQIP-SPDDVAWTTVISGC 576



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 29/221 (13%)

Query: 200 FSLLKH---------GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF--SQM 248
           FS+L+H         GK  HA ++  G N   ++   LI MYA+ G +  A  +F  +  
Sbjct: 17  FSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQ 76

Query: 249 AVKNVVSWSAMIACYARNGM---------AFEALELFREMIMES--HDLCPNSVTMVSVL 297
           + +++V+++A++A YA  G          AF    L R+ +M +  H L P       + 
Sbjct: 77  SDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSP-------LF 129

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           + C    +    + + GY ++ GL   + V  ALV +YA+  ++   + +FD M  RDVV
Sbjct: 130 KLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVV 189

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
            WN ++ +Y   G G + + +F      G+ P  +S  ++L
Sbjct: 190 LWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL 230



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 132/319 (41%), Gaps = 43/319 (13%)

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR--RTIYVWNALFRALTLAG 160
           H+ +  +G + D ++   LI +Y+   S+  AR +FD T +  R +  +NA+  A    G
Sbjct: 36  HAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTG 95

Query: 161 ------RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
                 +  E   ++R +  +   + + R T + + K C+     +      + +    +
Sbjct: 96  ELHDVEKTHEAFHIFRLLRQSV--MLTTRHTLSPLFKLCLL----YGSPSASEALQGYAV 149

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           + G    V +   L+++YA+F  +  A  +F +M V++VV W+ M+  Y   G   E L 
Sbjct: 150 KIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLG 209

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           LF         L P+ V++ ++L         E+                L  V A  T 
Sbjct: 210 LFSAF--HRSGLRPDCVSVRTILMGVGKKTVFERE---------------LEQVRAYATK 252

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
              C             D  DV  WN  +SSY   G G +A+  F++MI   V    +++
Sbjct: 253 LFVCD------------DDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTY 300

Query: 395 VSVLGACSHAGLVEEGKML 413
           + +L   +    +E GK +
Sbjct: 301 IVILSVVASLNHLELGKQI 319


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/693 (33%), Positives = 372/693 (53%), Gaps = 99/693 (14%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD-QDPFLVTKLIN 123
           LRQ++D+L      T   Y  L+L C   N ++ A  + SH+  + F   D FL  +L++
Sbjct: 7   LRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLH 66

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL--------------------------T 157
           +Y+ F  + DA+++FDK  +R I+ WNAL  A                           T
Sbjct: 67  LYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTT 126

Query: 158 LAGRG-----EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS--------------- 197
           +AG       +E LEL++RM   G       +T   +L A    S               
Sbjct: 127 IAGFSGNSCPQESLELFKRMQREG--FEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVR 184

Query: 198 ------------------CG--------FSLLKHGKEIHASVLRHGYN---------GIV 222
                             CG        F  L     +  +++  GY          G++
Sbjct: 185 NFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLL 244

Query: 223 H------------IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAF 270
           H             M+T+I  Y + G V  A  VFS+   K++V W+AM+  YA+NG   
Sbjct: 245 HQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREE 304

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
           +AL LF EM++E  +  P+S T+ SV+ +CA LA+L  G+ +HG  +  GL++ L V SA
Sbjct: 305 DALLLFNEMLLEHIE--PDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSA 362

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           L+ MY++CG ++  + VF+ M  R+VVSWN++I     +G+   A+++F+ M+     P 
Sbjct: 363 LIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPD 422

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
            ++F+ +L AC H   +E+G+  F+S+  +H + P+++HYACMV+LLGR  ++E+A  +I
Sbjct: 423 NVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALI 482

Query: 451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWD 510
           +++  +P   +W +LL  C    ++  AE A++ LFEL+PT A  Y++L+++YA+   W 
Sbjct: 483 KNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWK 542

Query: 511 EVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKG 570
           +V  V+ L++++ ++K  G S IE+  +++ F S D  HP+ E ++  L  L  +++E+G
Sbjct: 543 DVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEG 602

Query: 571 YVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG-ETIRITKNLRLCEDCHSFT 629
           + P T +VL+D+  +EK + +  HSEKLA+AFGLI    G   IRI KN+R+C DCH F 
Sbjct: 603 FTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFM 662

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KF S+   ++I++RD NRFHHF  G CSC D W
Sbjct: 663 KFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 147/320 (45%), Gaps = 10/320 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N L     K G + QA  +          ++ L++     +      + +   +  +G  
Sbjct: 194 NALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHM 253

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            D   ++ +I  Y     VD+AR VF + + + I  W A+       GR E+ L L+  M
Sbjct: 254 PDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEM 313

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                 I  D +T + V+ +C       + L HG+ +H   +  G N  + + + LIDMY
Sbjct: 314 --LLEHIEPDSYTLSSVVSSCAK----LASLHHGQAVHGKSILAGLNNNLLVSSALIDMY 367

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           ++ G +  A  VF+ M  +NVVSW+AMI   A+NG   +ALELF  M+ +     P++VT
Sbjct: 368 SKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFK--PDNVT 425

Query: 293 MVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
            + +L AC     +EQG+     I  + G+   L   + +V +  R G++E    +  +M
Sbjct: 426 FIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNM 485

Query: 352 -DKRDVVSWNSLISSYGVHG 370
               D + W++L+S     G
Sbjct: 486 AHDPDFLIWSTLLSICSTKG 505


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 334/592 (56%), Gaps = 18/592 (3%)

Query: 75  EPNPTQHTYELLLLSCTH--HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
           E    Q TY  +L SC H   + L D   +H H    GF  D  +   LI++Y+   S  
Sbjct: 78  ELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFK 137

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
            A  VF+K   + +  + ++ +A T   +  E  ELY++M     GI  D + Y   L  
Sbjct: 138 FAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKM--LSEGIMPDIYAYAAALAV 195

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
           C         ++ G+ IH  +  H     V     L+ MY RFG +  A +VF  +  K+
Sbjct: 196 C-------PTIREGEAIHVKLGNHERRTPV-CSNALVGMYGRFGRIASAKWVFDGIRYKD 247

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           + S++ MIA +A+     +A+ L+ EM  E  +L PN  T  SVL AC+ L AL +GK I
Sbjct: 248 LASYNNMIAVFAKYDDGSKAISLYIEM--EGRNLEPNLWTFTSVLDACSKLGALTEGKEI 305

Query: 313 HGYILRRGLDSILPVV--SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
           H  +  +G D    V   +ALV MYA+CG     + VF+    ++V +W SL+S+Y   G
Sbjct: 306 HKKV--KGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQPG 363

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
                ++ ++ M   GV P  ++F ++  ACSH+GL +EG + F +MR++H I P   HY
Sbjct: 364 QSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHY 423

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
            CM+DLLGR  +L EA +++  +   P    W  LL +C+++ ++++  RA KR+ EL P
Sbjct: 424 TCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELNP 483

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
            ++G Y+L+ ++YA A  W +V  VK++++ RGL K PG+S IE +R+++ FV  D  HP
Sbjct: 484 PDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTAHP 543

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
             +++ A L  +  ++   GY P TK VL D++ E K  ++L HSE++A+  GL+ +  G
Sbjct: 544 LNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLTSDAG 603

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            T+ I KNLR+C DCHSF K +SK  ++++LVRD +RFH F+ G CSCGDYW
Sbjct: 604 ATLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 655



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+  Y R   +  A   FS++A KN  S++ M+  Y  N +  +AL+LF++ I E  +L 
Sbjct: 23  LVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSINE--ELQ 80

Query: 288 PNSVTMVSVLQACAALAA--LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
            N  T V+VL++CA L    LE GK IH + + +G  + L V ++L+ MYA+CG  +   
Sbjct: 81  QNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKFAA 140

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VF+ M+ ++++S+ S+I +Y       +A +++K+M+  G+ P   ++ + L  C    
Sbjct: 141 GVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCP--- 197

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
            + EG+ +   +       P   +   +V + GR  ++  A  + + +R
Sbjct: 198 TIREGEAIHVKLGNHERRTPVCSN--ALVGMYGRFGRIASAKWVFDGIR 244


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/582 (37%), Positives = 341/582 (58%), Gaps = 16/582 (2%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF---DSVDDARHVFDKT 141
           LL+  C   NSL + + + ++   +   +D   V KLIN  +      S+  ARH+F+  
Sbjct: 34  LLISKC---NSLRELMQIQAYAIKSHI-EDVSFVAKLINFCTESPTESSMSYARHLFEAM 89

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
               I ++N++ R  +      EV  L+  +     GI  D +T+  +LKAC  +     
Sbjct: 90  SEPDIVIFNSMARGYSRFTNPLEVFSLFVEI--LEDGILPDNYTFPSLLKACAVAKA--- 144

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L+ G+++H   ++ G +  V++  TLI+MY     V  A  VF ++    VV ++AMI 
Sbjct: 145 -LEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMIT 203

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            YAR     EAL LFREM  +   L PN +T++SVL +CA L +L+ GK IH Y  +   
Sbjct: 204 GYARRNRPNEALSLFREM--QGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
              + V +AL+ M+A+CG L+    +F+ M  +D  +W+++I +Y  HG   K++ +F+ 
Sbjct: 262 CKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFER 321

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M    V P  I+F+ +L ACSH G VEEG+  F  M  +  I PS++HY  MVDLL RA 
Sbjct: 322 MRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAG 381

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
            LE+A + I+ L I P P +W  LL +C  H N++LAE+ S+R+FEL+ ++ G+YV+L++
Sbjct: 382 NLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSN 441

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YA    W+ V  ++++++ R   KVPG S IEV   ++ F S D       +LH  L  
Sbjct: 442 LYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDE 501

Query: 562 LSAEMKEKGYVPQTKVVLY-DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
           +  E+K  GYVP T +V++ +++ +EKE  +  HSEKLA+ FGL+NT  G TIR+ KNLR
Sbjct: 502 MVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLR 561

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH+  K IS    +++++RDV RFHHF +G CSCGD+W
Sbjct: 562 VCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 144/298 (48%), Gaps = 16/298 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL +C    +L +   +H      G D + ++   LIN+Y+  + VD AR V
Sbjct: 127 PDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCV 186

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+     +  +NA+        R  E L L+R M   G  ++ +  T   VL +C    
Sbjct: 187 FDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ--GKYLKPNEITLLSVLSSCAL-- 242

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  GK IH    +H +   V + T LIDM+A+ G +  A  +F +M  K+  +WS
Sbjct: 243 --LGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWS 300

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI  YA +G A +++ +F    M S ++ P+ +T + +L AC+    +E+G+     ++
Sbjct: 301 AMIVAYANHGKAEKSMLMFER--MRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMV 358

Query: 318 RR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV----VSWNSLISSYGVHG 370
            + G+   +    ++V + +R G LE     ++ +DK  +    + W  L+++   H 
Sbjct: 359 SKFGIVPSIKHYGSMVDLLSRAGNLEDA---YEFIDKLPISPTPMLWRILLAACSSHN 413


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/618 (36%), Positives = 351/618 (56%), Gaps = 21/618 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + G   + L++ S    +  +P   T   +  +C   ++      VH ++  
Sbjct: 268 NAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVK 327

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           + F  D  +   LI +YS    +++A  VF +   + +  W A+  +L       + +E 
Sbjct: 328 SEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVET 387

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           Y+ M   G  I  D  T   VL AC         L  G  +H   ++ G    V +  +L
Sbjct: 388 YKMMELEG--ILPDEITLVSVLSACAC----IGHLDLGIRLHEIAIKTGLVSHVIVSNSL 441

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY++  CV  A  VF  ++ KNVVSW+++I     N  +FEAL  FR+M      + P
Sbjct: 442 IDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM---KESMKP 498

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARCGKLELGQC 346
           NSVT++SVL ACA + AL +GK IH + LR G+  D  LP  +A++ MY RCG+      
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLP--NAILDMYVRCGRKVPALN 556

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
            F+   K+DV +WN L++ Y   G    A+++F +M+   + P  I+F+S+L ACS +G+
Sbjct: 557 QFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGM 615

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V EG   F  M+ ++ + P+++HYAC+VD+LGRA +L++A   I+D+ I P   +WG+LL
Sbjct: 616 VTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALL 675

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +CRIH NVEL E A+KR+FE +  + G Y+LL ++YA    WD+V +V+ L+  RGL  
Sbjct: 676 NACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSA 735

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S +E+K K+++F+S D  H Q ++++ +L    ++MKE G+         ++++  
Sbjct: 736 DPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSR 795

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
            + I  GHSE+ A+AFGLINT+ G  I + KNL +C  CH+  KFIS    +EI VRDV 
Sbjct: 796 AD-IFCGHSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISVRDVE 854

Query: 647 RFHHFRNGVCSCGD--YW 662
            +HHF++GVCSCGD  YW
Sbjct: 855 EYHHFKDGVCSCGDEGYW 872



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 223/443 (50%), Gaps = 18/443 (4%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCT 91
           +S+  +    S   + +N  ++ LC QGNL QA+     +L +     +  Y  LL  C 
Sbjct: 49  ISVVGAAVSHSAIDQTQNLELRELCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCE 108

Query: 92  HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNA 151
              +  +   V+  ++ +       L   L++++  F ++ DA +VF K   R ++ WN 
Sbjct: 109 WRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNV 168

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           L      AG  +E L LY RM      IR + +T+  VLK C     G S +  GKEIHA
Sbjct: 169 LVGGYAKAGCFDEALNLYHRM--LWAEIRPNVYTFPSVLKTCA----GVSDIARGKEIHA 222

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
            V+R G+   V +   LI MY + G +  A  +F +M  ++ +SW+AMI+ Y  NG   E
Sbjct: 223 HVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLE 282

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
            LELF  M   S D  P+ +TM +V  AC  L     G+ +HGY+++      + + ++L
Sbjct: 283 GLELFSMMRELSVD--PDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSL 340

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MY+  G+LE  + VF  M+ +DVVSW ++I+S   H    KA++ +K M   G+ P  
Sbjct: 341 IQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDE 400

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           I+ VSVL AC+  G ++ G  L E   K  ++   +   + ++D+  +   ++ A ++  
Sbjct: 401 ITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS-LIDMYSKCKCVDNALEVFR 459

Query: 452 DLRIEPGPKV--WGSLLGSCRIH 472
           ++    G  V  W SL+   RI+
Sbjct: 460 NI---SGKNVVSWTSLILGLRIN 479


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/651 (34%), Positives = 363/651 (55%), Gaps = 72/651 (11%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P+ +  T+ + L+  +  N+L     +H+ +  +    +  +VT+LI+      S+D A 
Sbjct: 35  PSRSPETHFIPLIHAS--NTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYAL 92

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            +F       ++V+NAL R L    R E  +  +  M      IR DR T  +VLK+ VA
Sbjct: 93  SIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLM--LRLSIRPDRLTLPFVLKS-VA 149

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY--------------- 240
           +     L   G+ +H  V++ G      +  +L+DMY + G + +               
Sbjct: 150 ALVDVGL---GRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAE 206

Query: 241 --------------------AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
                               A  +F  M  +N  SW+++I  + RNG    A ELF +M 
Sbjct: 207 SILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMP 266

Query: 281 -----------------------------MESHDLCPNSVTMVSVLQACAALAALEQGKM 311
                                        M    + PN +T+VS L AC  + AL+ G+ 
Sbjct: 267 EKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGER 326

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           IH Y+   G      + +ALV MYA+CG ++    VF     +D+++W+ +I  + +HG 
Sbjct: 327 IHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGC 386

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             +A+Q F +M   G++P  + F+++L ACSH+G V++G   FESMR ++ I P+++HY 
Sbjct: 387 FDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYT 446

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
            +VDLLGRA +L+EA   I+ + I P   +WG+L  +CR H N+E+AE  +++L +LEP 
Sbjct: 447 LIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPK 506

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
           + G+YV L++VYAA   W++V+RV+ L++ RG++K PG S IEV+ +++SFV+ D  H +
Sbjct: 507 HPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVR 566

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
            E++   L  ++A  K++GY+P+T  VL++++ EEKE  +  HSEKLA+AFGLI+T+ G 
Sbjct: 567 AEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGS 626

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           TIRI KNLR+C DCHS  K+ SK + +EI++RD+ RFHHF++G CSCGDYW
Sbjct: 627 TIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/611 (37%), Positives = 348/611 (56%), Gaps = 54/611 (8%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV---DDARHVFDKTRRRTIYVWN 150
           +SL+ A  VH+ +      Q  +++TKL+ + +    V      R +F +      + W 
Sbjct: 19  SSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAWT 78

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH---GK 207
           AL RA  L G   + L  Y  M        S  FT++ +  AC A       ++H   G 
Sbjct: 79  ALIRAYALRGPLSQALSFYSSMRKRRVSPIS--FTFSALFSACAA-------VRHSALGA 129

Query: 208 EIHA-SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA----------------- 249
           ++HA ++L  G++  +++   +IDMY + G +  A  VF +M                  
Sbjct: 130 QLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRI 189

Query: 250 --------------VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
                         VK++V+W+AM+  YA+N M  +ALE+FR +  E  ++  + VT+V 
Sbjct: 190 GDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEI--DEVTLVG 247

Query: 296 VLQACAALAALEQGKMIHGYILRRGL---DSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           V+ ACA L A +    I       G    D++L V SAL+ MY++CG +E    VF  M 
Sbjct: 248 VISACAQLGASKYANWIRDIAESSGFGVGDNVL-VGSALIDMYSKCGNVEEAYDVFKGMR 306

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
           +R+V S++S+I  + +HG    AI++F +M+  GV P+ ++FV VL ACSHAGLV++G+ 
Sbjct: 307 ERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQ 366

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           LF SM K + + P+ E YACM DLL RA  LE+A +++E + +E    VWG+LLG+  +H
Sbjct: 367 LFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVH 426

Query: 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
            N ++AE ASKRLFELEP N GNY+LL++ YA+A  WD+V +V++LL  + L+K PG S 
Sbjct: 427 GNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSW 486

Query: 533 IEVKRKM-YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
           +E K  M + FV+ D  HP+  ++   L +L   +K  GY P    + Y ++  EK  ++
Sbjct: 487 VEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLL 546

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
           + HSEKLA+AFGL++T  G TI+I KNLR+CEDCH      SK   ++I+VRD  RFHHF
Sbjct: 547 MAHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHF 606

Query: 652 RNGVCSCGDYW 662
            NG CSC ++W
Sbjct: 607 LNGACSCSNFW 617



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL---GQCVFD 349
           +V +L+ C++L    Q K +H  I  + L     V++ L+ +      + L    + +F 
Sbjct: 11  VVRILERCSSL---NQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFS 67

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
            +   +  +W +LI +Y + G   +A+  +  M    VSP   +F ++  AC+
Sbjct: 68  QLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACA 120


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 243/716 (33%), Positives = 371/716 (51%), Gaps = 113/716 (15%)

Query: 52  KNELIQSLCKQGNLRQALDVLSIEPNPTQHT--YELLLLSCTHHNSLSDALNVHSHLTDN 109
           +  ++   C  G++  A  V    P   + T  Y  ++   +H+N    A+N+   +   
Sbjct: 83  RTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHE 142

Query: 110 GFDQDPF------------------------------------LVTKLINVYSHFDS--- 130
           GF  D F                                    +   L++VYS   S   
Sbjct: 143 GFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPS 202

Query: 131 -VDDARHVFDK---------TRRRTIYV-----------------------WNALFRALT 157
            +  AR VFD+         T   T YV                       +NA+     
Sbjct: 203 LLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYV 262

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-- 215
             G  +E LE+ RRM    +GI  D FTY  V++AC  +     LL+ GK++HA VLR  
Sbjct: 263 NRGFYQEALEMVRRM--VSSGIELDEFTYPSVIRACATAG----LLQLGKQVHAYVLRRE 316

Query: 216 ----HGYNGIVHIM------------------------TTLIDMYARFGCVMYAGFVFSQ 247
               H  N +V +                           L+  Y   G +  A  +F +
Sbjct: 317 DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKE 376

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M  KN++SW  MI+  A NG   E L+LF  M  E  + C  + +    +++CA L A  
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFS--GAIKSCAVLGAYC 434

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+  H  +L+ G DS L   +AL+TMYA+CG +E  + VF  M   D VSWN+LI++ G
Sbjct: 435 NGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALG 494

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
            HG+G +A+ +++EM+  G+ P  I+ ++VL ACSHAGLV++G+  F+SM   + I P  
Sbjct: 495 QHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGA 554

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           +HYA ++DLL R+ K  +A  +IE L  +P  ++W +LL  CR+H N+EL   A+ +LF 
Sbjct: 555 DHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFG 614

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           L P + G Y+LL++++AA   W+EV RV++L+  RG++K    S IE++ ++++F+  D 
Sbjct: 615 LIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDT 674

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE-EKERIVLGHSEKLAVAFGLIN 606
            HP+ E ++  L +L  EM+  GYVP T  VL+D++++  KE ++  HSEK+AVAFGL+ 
Sbjct: 675 SHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMK 734

Query: 607 TSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              G TIRI KNLR C DCH+F +F+S    ++I++RD  RFHHFRNG CSCG++W
Sbjct: 735 LPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 183/427 (42%), Gaps = 96/427 (22%)

Query: 74  IEPNP-------TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS 126
           ++PNP        ++   L L       SL  A  VH ++   GF     ++ +LI+VY 
Sbjct: 1   MQPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYC 60

Query: 127 HFDSVDDARHVFDKTRR---------------------------------RTIYVWNALF 153
               ++ AR +FD+                                    R   ++NA+ 
Sbjct: 61  KSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMI 120

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL----KHGKEI 209
              +    G   + L+ +M     G + D FT+  VL        G +L+    K   + 
Sbjct: 121 TGFSHNNDGYSAINLFCKMK--HEGFKPDNFTFASVL-------AGLALVADDEKQCVQF 171

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGC----VMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           HA+ L+ G   I  +   L+ +Y++       +  A  VF ++  K+  SW+ M+  Y +
Sbjct: 172 HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVK 231

Query: 266 NG------------------MAF--------------EALELFREMIMESHDLCPNSVTM 293
           NG                  +A+              EALE+ R M+    +L  +  T 
Sbjct: 232 NGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIEL--DEFTY 289

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
            SV++ACA    L+ GK +H Y+LRR  D      ++LV++Y +CGK +  + +F+ M  
Sbjct: 290 PSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPA 348

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +D+VSWN+L+S Y   G+ G+A  IFKEM    +    +S++ ++   +  G  EEG  L
Sbjct: 349 KDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI----LSWMIMISGLAENGFGEEGLKL 404

Query: 414 FESMRKE 420
           F  M++E
Sbjct: 405 FSCMKRE 411


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/642 (36%), Positives = 354/642 (55%), Gaps = 43/642 (6%)

Query: 52  KNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF 111
           +N LI      GNL  A  V          ++  +L       ++ +A +V+  + +   
Sbjct: 164 QNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPE--- 220

Query: 112 DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR 171
            ++      +I ++    +V++A  +F++ +++ +  W+AL          EE L L++ 
Sbjct: 221 -RNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKE 279

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           MN  G  I  D      VL AC        ++  GK +H  V++ G    V++   LI M
Sbjct: 280 MNANG--IMVDEVVVLSVLSACSR----LLVVITGKLVHGLVVKVGIETYVNLQNALIHM 333

Query: 232 YARFGCV--------------------MYAGFV-----------FSQMAVKNVVSWSAMI 260
           Y+    V                    M +G+V           F  M  K+ VSWSAMI
Sbjct: 334 YSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMI 393

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           + YA+     E L LF+EM +E     P+   +VSV+ AC  LAAL+QGK IH YI + G
Sbjct: 394 SGYAQQDRFTETLVLFQEMQIEGTK--PDETILVSVISACTHLAALDQGKWIHAYIRKNG 451

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           L   + + + L+ MY + G +E    VF  ++++ V +WN+LI    ++G   K+++ F 
Sbjct: 452 LKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFS 511

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           EM  HGV+P+ I+FV+VLGAC H GLV+EG   F SM +EH I P+++HY CMVDLLGRA
Sbjct: 512 EMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRA 571

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
             L+EA ++IE + + P    WG+LLG+C+ + + E  ER  ++L EL P + G  VLL+
Sbjct: 572 GMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLS 631

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YA+   W +V  V+ ++   G+ K PG S IE   +++ F++ D+ HPQ E +  +L 
Sbjct: 632 NIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLD 691

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            ++ ++K +GY P T+ V  D+D EEKE  +  HSEKLA+AFGLI       IRI KNLR
Sbjct: 692 EMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLR 751

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH+  K ISK  N+EI+VRD +RFHHF+ G CSC DYW
Sbjct: 752 ICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 199/418 (47%), Gaps = 80/418 (19%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
            +TY +L  SC+   +  D   +  H+   GFD D ++   LIN+Y+   ++ DAR VFD
Sbjct: 126 NYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFD 185

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
            +    +  WN++     L G  EE  ++Y RM                  +  +AS+  
Sbjct: 186 GSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPE----------------RNVIASN-- 227

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
                                      ++I ++ + G V  A  +F++M  K++VSWSA+
Sbjct: 228 ---------------------------SMIVLFGKKGNVEEACKLFNEMKQKDLVSWSAL 260

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I+CY +N M  EAL LF+E  M ++ +  + V ++SVL AC+ L  +  GK++HG +++ 
Sbjct: 261 ISCYEQNEMYEEALILFKE--MNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKV 318

Query: 320 GLDSILPVVSALVTMYA-------------------------------RCGKLELGQCVF 348
           G+++ + + +AL+ MY+                               +CG++E  + +F
Sbjct: 319 GIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALF 378

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M  +D VSW+++IS Y       + + +F+EM   G  P     VSV+ AC+H   ++
Sbjct: 379 DSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALD 438

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           +GK +   +RK  + + ++     ++++  +   +E+A ++ + L  E G   W +L+
Sbjct: 439 QGKWIHAYIRKNGL-KINIILGTTLINMYMKLGCVEDALEVFKGLE-EKGVSTWNALI 494



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 91/183 (49%), Gaps = 6/183 (3%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +FS +   N    + M+  Y +     +A+ +++ M+    ++  ++ T   + Q+C+  
Sbjct: 82  IFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFML--ESNVAADNYTYPILFQSCSIR 139

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
            A   GK I  ++L+ G DS + + + L+ MYA CG L   + VFD     D+VSWNS++
Sbjct: 140 LAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSML 199

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           + Y + G   +A  ++  M    V  S  S + + G     G VEE   LF  M+++ ++
Sbjct: 200 AGYVLVGNVEEAKDVYDRMPERNVIASN-SMIVLFGK---KGNVEEACKLFNEMKQKDLV 255

Query: 424 RPS 426
             S
Sbjct: 256 SWS 258


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/611 (38%), Positives = 342/611 (55%), Gaps = 63/611 (10%)

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRA 155
           L D + V + L  +GF    F+   L+++Y+    ++DA  VF++ R + +  WNA+   
Sbjct: 56  LPDTVGVVNILPVSGF-LGFFVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTG 114

Query: 156 LTLAGRGEEVLELYRRM---------------------------------NGTGTGIRSD 182
            +  GR E+ L L+ +M                                    G   R +
Sbjct: 115 YSQNGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPN 174

Query: 183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG-------IVHIMTTLIDMYARF 235
             T   +L AC +       L HGKE H   ++    G        + ++  LIDMYA+ 
Sbjct: 175 VVTLMSLLSACAS----VGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKC 230

Query: 236 GCVMYAGFVFSQMAVKN--VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
             +  A  +F ++  K+  VV+W+ MI  YA++G A  AL+LF EM    + + PN  T+
Sbjct: 231 KSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTI 290

Query: 294 VSVLQACAALAALEQGKMIHGYILRRG-LDS-ILPVVSALVTMYARCGKLELGQCVFDHM 351
             VL ACA LAAL+ GK IH Y+LRR  +DS +L V + L+ MY++ G ++  Q VFD M
Sbjct: 291 SCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSM 350

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
            KR+ VSW SL++ YG+HG           ++  G     I+F+ VL ACSH+G+V+ G 
Sbjct: 351 SKRNAVSWTSLLTGYGMHG---------AALVLDG-----ITFLVVLYACSHSGMVDRGI 396

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
            LF  M K+ ++ P VEHYACM DL GRA +L EA ++I D+ +EP P VW +LL +CR 
Sbjct: 397 DLFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRT 456

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H N ELAE A+K+L EL+  N G Y LL+++YA A  W +V R++ L++  G++K PG S
Sbjct: 457 HSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIRYLMKRTGIKKRPGWS 516

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            ++ ++ M +F   D  H Q ++++  L +L   +K  GYVPQT   L+D+D EEK   +
Sbjct: 517 WVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKAIGYVPQTNFSLHDVDDEEKGDQL 576

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
           L HSEKLA+A+ ++    G  IRITKNLR+C D HS   +IS     EI++RD +RFH F
Sbjct: 577 LEHSEKLALAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQF 636

Query: 652 RNGVCSCGDYW 662
           +NG CSC  YW
Sbjct: 637 KNGSCSCKGYW 647



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 21/164 (12%)

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+++++ Y+   +  +A+ LFREM +  + + P++V +V++L     L          
Sbjct: 24  VSWNSIVSVYSHCFVPNDAVFLFREMTV-GYGILPDTVGVVNILPVSGFLGFF------- 75

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
                        V +ALV MYA+CGK+E    VF+ M  +DVV+WN++++ Y  +G   
Sbjct: 76  -------------VGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFE 122

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
            A+ +F +M    +    +++ SV+   +  G   E   +F  M
Sbjct: 123 DALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQM 166



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 94/256 (36%), Gaps = 67/256 (26%)

Query: 55  LIQSLCKQGNLRQALDVLS--------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSH- 105
           +I    + G+   AL + S        I PN    T   +L++C    +L     +H++ 
Sbjct: 256 MIGGYAQHGDANHALQLFSEMFKIDNCIVPN--DFTISCVLMACARLAALKFGKQIHAYV 313

Query: 106 LTDNGFDQDPFLVTK-LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
           L  +  D D   V   LI++YS    VD A+ VFD   +R    W +L     L G G  
Sbjct: 314 LRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSL-----LTGYGMH 368

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
                      G  +  D  T+  VL AC                H+ ++  G       
Sbjct: 369 -----------GAALVLDGITFLVVLYACS---------------HSGMVDRG------- 395

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
               ID++ R    M   FV        V  ++ M   + R G   EA  L  +M ME  
Sbjct: 396 ----IDLFYR----MSKDFVVD----PGVEHYACMADLFGRAGRLCEATRLINDMSME-- 441

Query: 285 DLCPNSVTMVSVLQAC 300
              P  V  +++L AC
Sbjct: 442 ---PTPVVWIALLSAC 454


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/660 (35%), Positives = 363/660 (55%), Gaps = 66/660 (10%)

Query: 61  KQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT------------- 107
           K   L QA  +    P+P  H Y  ++   T ++ L DAL +   ++             
Sbjct: 24  KNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKG 83

Query: 108 --DNG--------FDQDP----FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
             D G        FD+ P       T ++N Y  F  V+ A+ +F     + +  WNA+ 
Sbjct: 84  CLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMV 143

Query: 154 RALTLAGRGEEVLELYRRM-----------------NGTG------------TGIRSDRF 184
                 GR EE + L+  M                 NG              +G+     
Sbjct: 144 HGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWS 203

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           T+  VL AC A++  F+L   G ++H  V++ G      I  +LI  YA    + +A  +
Sbjct: 204 TFACVLSAC-ANAVEFNL---GVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKI 259

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F++   KNVV W+A++  Y  N    +AL +F +M        PN  T    L+AC  L 
Sbjct: 260 FNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMT--KMGALPNQSTFSITLKACCGLE 317

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           AL++GK IH   ++ GL++ + V ++LV MY  CG +     VF +++++D+VSWNS+I 
Sbjct: 318 ALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIV 377

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE--SMRKEHM 422
               HG+G  A+  F +MI  GV P+ I+F  +L ACS +G++ +G+  FE  S  K ++
Sbjct: 378 GSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNV 437

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERAS 482
           +RP  +HYACMVD+LGR  KL+EA +++  + ++    +W +LL +CR+H N+E+AERA+
Sbjct: 438 LRP--QHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAA 495

Query: 483 KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSF 542
           K + +LEP  +  YVLL+++YA+A  W +V R++  ++  GL K PG S + ++ K + F
Sbjct: 496 KHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEF 555

Query: 543 VSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAF 602
           +S D  HP  E+++  L  L  ++KE GYVP  K  L+D++ E+KE ++  HSE+LA+AF
Sbjct: 556 LSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERLAIAF 615

Query: 603 GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           GL++T +G TI + KNLR+C DCHS  K +SK   ++I+VRD  RFHHF+NG+CSC DYW
Sbjct: 616 GLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCSDYW 675


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/570 (38%), Positives = 330/570 (57%), Gaps = 22/570 (3%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            +H+     G   D F+     ++Y      DDAR +FD+   R +  WNA        G
Sbjct: 79  QIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDG 138

Query: 161 RGEEVLELY---RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
           R  E +E +   RR++G    I     T+   L AC      +  L  G ++H  VLR G
Sbjct: 139 RPREAIEAFIEFRRIDGHPNSI-----TFCAFLNAC----SDWLHLNLGMQLHGLVLRSG 189

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF- 276
           ++  V +   LID Y +   +  +  +F++M  KN VSW +++A Y +N    +A  L+ 
Sbjct: 190 FDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYL 249

Query: 277 --REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
             R+ I+E+ D       + SVL ACA +A LE G+ IH + ++  ++  + V SALV M
Sbjct: 250 RSRKDIVETSDF-----MISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDM 304

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP--I 392
           Y +CG +E  +  FD M ++++V+ NSLI  Y   G    A+ +F+EM   G  P+P  +
Sbjct: 305 YGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYM 364

Query: 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           +FVS+L ACS AG VE G  +F+SMR  + I P  EHY+C+VD+LGRA  +E A + I+ 
Sbjct: 365 TFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKK 424

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
           + I+P   VWG+L  +CR+H   +L   A++ LF+L+P ++GN+VLL++ +AAA  W E 
Sbjct: 425 MPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEA 484

Query: 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV 572
             V+  L+  G++K  G S I VK ++++F + D  H   +++   L  L  EM+  GY 
Sbjct: 485 NTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYK 544

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
           P  K+ LYDL+ EEK   V  HSEKLA+AFGL++      IRITKNLR+C DCHSF KF+
Sbjct: 545 PDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFV 604

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           S    +EI+VRD NRFH F++G+CSC DYW
Sbjct: 605 SGSVKREIIVRDNNRFHRFKDGICSCKDYW 634



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 181/406 (44%), Gaps = 26/406 (6%)

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +YS  D  + AR V   T  R +  W +L   L   G     L  +  M   G  +  + 
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREG--VVPND 58

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           FT+    KA VAS     L   GK+IHA  ++ G    V +  +  DMY +      A  
Sbjct: 59  FTFPCAFKA-VAS---LRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARK 114

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +F ++  +N+ +W+A I+    +G   EA+E F E      D  PNS+T  + L AC+  
Sbjct: 115 LFDEIPERNLETWNAFISNSVTDGRPREAIEAFIE--FRRIDGHPNSITFCAFLNACSDW 172

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
             L  G  +HG +LR G D+ + V + L+  Y +C ++   + +F  M  ++ VSW SL+
Sbjct: 173 LHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLV 232

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           ++Y  +    KA  ++       V  S     SVL AC+    +E G+ +       H +
Sbjct: 233 AAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSI-----HAHAV 287

Query: 424 RPSVEHY----ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
           +  VE      + +VD+ G+   +E++ +  +++  E       SL+G       V++A 
Sbjct: 288 KACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTRNSLIGGYAHQGQVDMA- 345

Query: 480 RASKRLF-ELEPTNAG---NYVLLADVYAAADMWDEVKRVKRLLEA 521
                LF E+ P   G   NY+    + +A      V+   ++ ++
Sbjct: 346 ---LALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDS 388



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 143/324 (44%), Gaps = 12/324 (3%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N  I +    G  R+A++       I+ +P   T+   L +C+    L+  + +H  +  
Sbjct: 128 NAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLR 187

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GFD D  +   LI+ Y     +  +  +F +   +    W +L  A       E+   L
Sbjct: 188 SGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVL 247

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           Y R       + +  F  + VL AC     G + L+ G+ IHA  ++      + + + L
Sbjct: 248 YLR--SRKDIVETSDFMISSVLSACA----GMAGLELGRSIHAHAVKACVERTIFVGSAL 301

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +DMY + GC+  +   F +M  KN+V+ +++I  YA  G    AL LF EM        P
Sbjct: 302 VDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTP 361

Query: 289 NSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           N +T VS+L AC+   A+E G K+        G++      S +V M  R G +E     
Sbjct: 362 NYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEF 421

Query: 348 FDHMDKRDVVS-WNSLISSYGVHG 370
              M  +  +S W +L ++  +HG
Sbjct: 422 IKKMPIQPTISVWGALQNACRMHG 445


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/617 (36%), Positives = 350/617 (56%), Gaps = 60/617 (9%)

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS--VDDARHVFDKTRRRTIYVWNALFRA 155
           D   +H+     G  QDP    ++I  +  F S  +D AR VF +      + WN + R 
Sbjct: 34  DLKQLHAIFIKTGQIQDPLTAAEVIK-FCAFSSRDIDYARAVFRQMPEPNCFCWNTILRV 92

Query: 156 LTLAGR---GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
           L          E L L+  M   G  ++ +RFT+  VLKAC  +S     L+ GK+IH  
Sbjct: 93  LAETNDEHLQSEALMLFSAMLCDGR-VKPNRFTFPSVLKACARAS----RLREGKQIHGL 147

Query: 213 VLRHGYNGIVHIMTTLIDMYA--------------------------------------- 233
           +++ G++    +++ L+ MY                                        
Sbjct: 148 IVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLW 207

Query: 234 --------RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
                   R G +  A  +F +M  ++VVSW+ MI+ YA+NG   EA+ LF+EM  +S +
Sbjct: 208 NIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEM--QSSN 265

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + PN VT+VSVL A A + ALE GK IH Y  +  ++    + SALV MY++CG ++   
Sbjct: 266 IDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEAL 325

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VF+ + KR+ ++W+++I ++ +HG    AI  F  M   GV+P+ ++++ +L ACSHAG
Sbjct: 326 QVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAG 385

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           LVEEG+  F  M K   ++P +EHY CMVDLLGRA  LEEA ++I ++ IEP   +W +L
Sbjct: 386 LVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKAL 445

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           LG+C++H N+++ ER ++ L EL P ++G+YV L+++YA+   W+ V RV+  ++   ++
Sbjct: 446 LGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIR 505

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K PG S IE+   ++ F+  D+ H + +++ A+L  +S +++  GY P T  V  + D +
Sbjct: 506 KDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQ 565

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           E+ R +  HSEK+AVAFGLI+T+    ++I KNLR+CEDCH+  K IS    ++I+VRD 
Sbjct: 566 ERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDR 625

Query: 646 NRFHHFRNGVCSCGDYW 662
            RFH F +G CSC DYW
Sbjct: 626 KRFHQFEHGSCSCMDYW 642



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 145/344 (42%), Gaps = 63/344 (18%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY------------ 125
           P + T+  +L +C   + L +   +H  +   GF +D F+++ L+ +Y            
Sbjct: 120 PNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSL 179

Query: 126 -----SHFD------------------------------SVDDARHVFDKTRRRTIYVWN 150
                  FD                               +  A+++FD+  +R++  WN
Sbjct: 180 FCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWN 239

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
            +       G   E + L++ M    + I  +  T   VL A          L+ GK IH
Sbjct: 240 VMISGYAQNGHFIEAINLFQEMQ--SSNIDPNYVTLVSVLPAIAR----IGALELGKWIH 293

Query: 211 ASVLRHGYNGIV---HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
              L  G N I     + + L+DMY++ G +  A  VF  +  +N ++WSA+I  +A +G
Sbjct: 294 ---LYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHG 350

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR-RGLDSILP 326
            A +A+  F   +M    + PN V  + +L AC+    +E+G+    ++++  GL   + 
Sbjct: 351 RAEDAIIHFH--LMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIE 408

Query: 327 VVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
               +V +  R G LE  + +  +M  + D V W +L+ +  +H
Sbjct: 409 HYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMH 452



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 110/282 (39%), Gaps = 50/282 (17%)

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
           NL Q +   +I+PN    T   +L +     +L     +H +   N  + D  L + L++
Sbjct: 256 NLFQEMQSSNIDPNYV--TLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVD 313

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +YS   S+D+A  VF+   +R    W+A+  A  + GR E+ +  +  M     G+  + 
Sbjct: 314 MYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMG--KAGVTPND 371

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR---FGCVMY 240
             Y  +L AC                HA ++  G +   H M  ++ +  R   +GC   
Sbjct: 372 VAYIGILSACS---------------HAGLVEEGRSFFSH-MVKVVGLQPRIEHYGC--- 412

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
                             M+    R G   EA EL R M +E     P+ V   ++L AC
Sbjct: 413 ------------------MVDLLGRAGHLEEAEELIRNMPIE-----PDDVIWKALLGAC 449

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
                L+ G+ +   ++          V AL  +YA  G  E
Sbjct: 450 KMHKNLKMGERVAETLMELAPHDSGSYV-ALSNLYASLGNWE 490


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/612 (35%), Positives = 354/612 (57%), Gaps = 14/612 (2%)

Query: 55  LIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    + G L  A+D+    L  E  P + T   LL +C      S    +HS +  +G
Sbjct: 219 MITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSG 278

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              D F+   L+++Y+   +V+++R +F+      +  W AL      + + +E ++L+ 
Sbjct: 279 LASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFC 338

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M      +  + FT++ VLKAC AS   F +   GK++H   ++ G + I  +  +LI+
Sbjct: 339 NM--LHGHVTPNCFTFSSVLKAC-ASLPDFGI---GKQLHGQTIKLGLSTINCVGNSLIN 392

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MYAR G +  A   F+ +  KN++S++        N  A ++ E F   + E   +  + 
Sbjct: 393 MYARSGTMECARKAFNILFEKNLISYNTAADA---NAKALDSDESFNHEV-EHTGVGASP 448

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T   +L   A +  + +G+ IH  I++ G  + L + +AL++MY++CG  E    VF+ 
Sbjct: 449 FTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFND 508

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M  R+V++W S+IS +  HG+  KA+++F EM+  GV P+ +++++VL ACSH GL++E 
Sbjct: 509 MGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEA 568

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
              F SM   H I P +EHYACMVDLLGR+  L EA + I  +  +    VW + LGSCR
Sbjct: 569 WKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCR 628

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
           +H N +L E A+K++ E EP +   Y+LL+++YA+   WD+V  +++ ++ + L K  G 
Sbjct: 629 VHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGY 688

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S IEV  +++ F   D  HPQ  +++  L  L+ ++K  GY+P T  VL+D++ E+KE+ 
Sbjct: 689 SWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQY 748

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +  HSEK+AVA+ LI+T K + IR+ KNLR+C DCH+  K+IS    +EI+VRD NRFHH
Sbjct: 749 LFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHH 808

Query: 651 FRNGVCSCGDYW 662
            ++G CSC DYW
Sbjct: 809 IKDGKCSCNDYW 820



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 181/357 (50%), Gaps = 15/357 (4%)

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
           +LR+A+  L +          LLL +C    +L     +H  L D+G   D  L+  LI 
Sbjct: 23  SLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLIT 82

Query: 124 VYSHFDSVDDARHVFDKT--RRRTIYVWNAL---FRALTLAGRGEEVLELYRRMNGTGTG 178
           +YS     ++A  +F      +R +  W+A+   F   ++  R   +L     +  +   
Sbjct: 83  LYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRA--LLTFLHMLQCSRNI 140

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFGC 237
           I  + + +T +L++C ++   F+    G  I A +L+ GY +  V +   LIDM+ + G 
Sbjct: 141 IYPNEYCFTALLRSC-SNPLFFTT---GLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGL 196

Query: 238 -VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            +  A  VF +M  KN+V+W+ MI  Y++ G+  +A++LF  +++  +   P+  T+ S+
Sbjct: 197 DIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYT--PDKFTLTSL 254

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           L AC  L     GK +H +++R GL S + V   LV MYA+   +E  + +F+ M   +V
Sbjct: 255 LSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNV 314

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +SW +LIS Y       +AI++F  M++  V+P+  +F SVL AC+       GK L
Sbjct: 315 MSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQL 371



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 134/273 (49%), Gaps = 12/273 (4%)

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
           + +LKAC+ S      L+ GK +H  ++  G      ++ +LI +Y++ G    A  +F 
Sbjct: 43  SLLLKACIRSGN----LELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFR 98

Query: 247 QMA--VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC-PNSVTMVSVLQACAAL 303
            M    +++VSWSA+I+C+A N M   AL  F  M+  S ++  PN     ++L++C+  
Sbjct: 99  NMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNP 158

Query: 304 AALEQGKMIHGYILRRG-LDSILPVVSALVTMYARCG-KLELGQCVFDHMDKRDVVSWNS 361
                G  I  ++L+ G  DS + V  AL+ M+ + G  ++  + VFD M  +++V+W  
Sbjct: 159 LFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTL 218

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +I+ Y   G    A+ +F  ++    +P   +  S+L AC        GK L   + +  
Sbjct: 219 MITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSG 278

Query: 422 MIRPSVEHYAC-MVDLLGRANKLEEAAKIIEDL 453
           +   S     C +VD+  ++  +E + KI   +
Sbjct: 279 L--ASDVFVGCTLVDMYAKSAAVENSRKIFNTM 309


>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
 gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/485 (40%), Positives = 311/485 (64%), Gaps = 4/485 (0%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           G+R+D  + ++V++ C    C    L  G+++HA +L  G+     ++T L+D+Y+    
Sbjct: 19  GLRADPVSLSFVIR-CYIRICS---LIGGEQVHARILSDGHQSDSLLLTNLMDLYSLCDK 74

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
              A  VF +M  ++ ++W+ +I+CY RN    + L +F  M+       P+ VT + +L
Sbjct: 75  GSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCEPDDVTCLLLL 134

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           QACA L ALE G+ +HG+I+ RG D+   + ++L+ MY++ G L+    VF  M  ++VV
Sbjct: 135 QACANLGALEFGEKVHGHIVERGYDNATNLCNSLIAMYSQFGNLDKAFGVFKGMHNKNVV 194

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           +W+++IS   ++GYG +AI  F+EM+  GV P  ++F  VL ACS+ GLV++G ++F  M
Sbjct: 195 TWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACSNCGLVDKGMIIFARM 254

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
            KE  I P++ HY CMVDLLGRA +L +A ++I  +R++P   +W +LLG+CRIH NV L
Sbjct: 255 SKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDSTIWRTLLGACRIHRNVIL 314

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
            E   + L EL+   AG+YVLL ++Y++ D W +V  +++ ++ +G+Q  P  S IE+K 
Sbjct: 315 GEHVVEHLIELKAQEAGDYVLLFNLYSSVDNWKKVTELRKFMKEKGIQTTPASSSIELKG 374

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
           K++ FV  D  HPQ ++++ +L  +S ++K  GYV +    L +LDAEEK  ++  HSEK
Sbjct: 375 KVHEFVVDDVSHPQKDEIYEMLDEISKQLKIAGYVAEITSELPNLDAEEKRYVLSYHSEK 434

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AFG++ T  G TIRI KNLR+C DCH+F K +S   N+++++ D  RFHHFR G CS
Sbjct: 435 LAIAFGVLATPPGTTIRIAKNLRICVDCHNFAKILSGVYNRQVIITDHTRFHHFRGGHCS 494

Query: 658 CGDYW 662
           C DYW
Sbjct: 495 CNDYW 499



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 135/279 (48%), Gaps = 12/279 (4%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           SL     VH+ +  +G   D  L+T L+++YS  D   +A  VFD+ R+R    WN L  
Sbjct: 39  SLIGGEQVHARILSDGHQSDSLLLTNLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLIS 98

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
                 R  +VL ++  M     G   D  T   +L+AC         L+ G+++H  ++
Sbjct: 99  CYMRNRRTRDVLVIFDGMLSGELGCEPDDVTCLLLLQACA----NLGALEFGEKVHGHIV 154

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
             GY+   ++  +LI MY++FG +  A  VF  M  KNVV+WSA+I+  A NG   EA+ 
Sbjct: 155 ERGYDNATNLCNSLIAMYSQFGNLDKAFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIG 214

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SAL 331
            F EM+     + P+ +T   VL AC+    +++G +I   + +     I+P +     +
Sbjct: 215 AFEEML--KMGVLPDDLTFTGVLSACSNCGLVDKGMIIFARMSKEF--GIVPNIHHYGCM 270

Query: 332 VTMYARCGKLELG-QCVFDHMDKRDVVSWNSLISSYGVH 369
           V +  R G+L    Q +     K D   W +L+ +  +H
Sbjct: 271 VDLLGRAGQLHQAYQLIMSMRVKPDSTIWRTLLGACRIH 309



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 9/188 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T  LLL +C +  +L     VH H+ + G+D    L   LI +YS F ++D A  V
Sbjct: 125 PDDVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATNLCNSLIAMYSQFGNLDKAFGV 184

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F     + +  W+A+   L + G G E +  +  M     G+  D  T+T VL AC  S+
Sbjct: 185 FKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEM--LKMGVLPDDLTFTGVLSAC--SN 240

Query: 198 CGFSLLKHGKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVS 255
           CG  L+  G  I A + +  G    +H    ++D+  R G +  A  +   M VK +   
Sbjct: 241 CG--LVDKGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDSTI 298

Query: 256 WSAMI-AC 262
           W  ++ AC
Sbjct: 299 WRTLLGAC 306



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 4/143 (2%)

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
           E   +++EM      L  + V++  V++    + +L  G+ +H  IL  G  S   +++ 
Sbjct: 7   EGFFMYQEM--RKKGLRADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSLLLTN 64

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH--GVS 388
           L+ +Y+ C K      VFD M +RD ++WN LIS Y  +      + IF  M+    G  
Sbjct: 65  LMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCE 124

Query: 389 PSPISFVSVLGACSHAGLVEEGK 411
           P  ++ + +L AC++ G +E G+
Sbjct: 125 PDDVTCLLLLQACANLGALEFGE 147


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/600 (36%), Positives = 344/600 (57%), Gaps = 15/600 (2%)

Query: 67  QALDVLSIEPNPTQHTYELLLLSCTH-HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY 125
            AL +  + PNP+  T+ + L S +   + L     +H+         +P ++T L+ +Y
Sbjct: 57  HALRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLY 116

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
           +    +  A+ VFD+    +   W AL  A   AG   E + + R  N    G+R D FT
Sbjct: 117 ARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVAR--NAFANGMRPDSFT 174

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
              VL AC       + L  G+ +  +  + G    V + T  +D+Y + G +  A  VF
Sbjct: 175 AVRVLTACAR----VADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVF 230

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
            +M  K+ V+W AM+  YA NG   EAL+LF  + M++  + P+   +   L AC  L A
Sbjct: 231 DKMRDKDAVAWGAMVGGYASNGHPREALDLF--LAMQAEGVRPDCYAVAGALSACTRLGA 288

Query: 306 LEQGKMIHGYILRRGLDSIL--PVV-SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           L+ G+     I     D  L  PV+ +AL+ MYA+CG       VF  M K+D++ WN++
Sbjct: 289 LDLGRQA---IRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAM 345

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           I   G+ G+   A  +  +M   GV  +  +F+ +L +C+H GL+++G+  F +M K + 
Sbjct: 346 ILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYH 405

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERAS 482
           I P +EHY C+VDLL RA  L+EA ++I+D+ +     + G+LLG C+IH N ELAE   
Sbjct: 406 ISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVL 465

Query: 483 KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSF 542
            +L  LEP N+GNYV+L+++Y+    W++  +++  ++ +G++KVP  S +E + K++ F
Sbjct: 466 TQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEF 525

Query: 543 VSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAF 602
              D+ HP  +Q++  L  L  EMK  GY P T+VV++D++ EEKE  ++ HSEKLA+AF
Sbjct: 526 RVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAF 585

Query: 603 GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            L+ T  GETIR+TKNLR+C DCH+  K IS+  ++EI+VRD NRFH FR+G CSC DYW
Sbjct: 586 NLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 143/385 (37%), Gaps = 50/385 (12%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS 95
           + L S T P  L+S     L+    + G L +A  V    P+P+  ++  L+ +      
Sbjct: 98  LKLPSHTNPHVLTS-----LLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGD 152

Query: 96  LSDALNVHSHLTDNGFDQDP-----------------------------------FLVTK 120
           L +A++V  +   NG   D                                    F+ T 
Sbjct: 153 LREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATA 212

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
            +++Y     +  AR VFDK R +    W A+       G   E L+L+  M     G+R
Sbjct: 213 AVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQ--AEGVR 270

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D +     L AC         L  G++    V    +     + T LIDMYA+ G    
Sbjct: 271 PDCYAVAGALSACTR----LGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAE 326

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF QM  K+++ W+AMI      G    A  L  +  ME   +  N  T + +L +C
Sbjct: 327 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQ--MEKSGVKLNDNTFIGLLCSC 384

Query: 301 AALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVS 358
                ++ G +  H       +   +     +V + +R G L+    + D M    + V 
Sbjct: 385 THTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVI 444

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMI 383
             +L+    +H     A  +  ++I
Sbjct: 445 LGALLGGCKIHRNAELAEHVLTQLI 469


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/580 (35%), Positives = 352/580 (60%), Gaps = 10/580 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           L+L     +S+S    +H+H+  +   +D F+  +L++ Y       DA  +FD+  ++ 
Sbjct: 51  LILHLKSSSSVSICRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKD 110

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
              WN+L   L   G+  E L ++ +M  + + ++ + FT+  V+ ACV+          
Sbjct: 111 FVSWNSLVSGLAKIGQLGECLSVFCKMK-SDSELKLNEFTFLSVISACVSEKA----CDE 165

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM--AVKNVVSWSAMIACY 263
           G  +H   ++ G    V ++  L++MY +FG V  A  +FS+M  + K++VSW++++A  
Sbjct: 166 GYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVC 225

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           A+NGM  EA   F   +M  +   P+  TMVS+LQAC         +++HG I   GLD 
Sbjct: 226 AQNGMPNEAFNCFD--MMRVNGFFPDDATMVSLLQACENFPLGRMVEVLHGVIFTCGLDE 283

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            L +V+ L+ +Y++ G+L   + VF+ + K D V+W ++++ Y +HG G +AI+ F+ ++
Sbjct: 284 NLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIV 343

Query: 384 YH-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              G+ P  ++F  +L ACSH+GLV+EGK  F  M   + ++P ++HY+CMVDLLGR   
Sbjct: 344 REEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGL 403

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           L++A ++I+++  EP   VWG+LLG+CR+H N++L + A+K L  L+P++  NY++L+++
Sbjct: 404 LDDAHELIKNMPFEPNSGVWGALLGACRVHRNIDLGKEAAKNLIALDPSDPRNYIMLSNM 463

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           Y+AA +W++  +V+ L++ + L +  G S IE   K++ FV  D  HP   ++H  L  +
Sbjct: 464 YSAAGLWNDASKVRTLMKNKVLTRNQGCSFIEHGNKIHRFVVDDYTHPDSHRIHKKLEEV 523

Query: 563 SAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLC 622
             ++++ G+V +T+ +L+D+D E K  ++  HSEK+A+A+GL+ T+    + I KNLR+C
Sbjct: 524 MKKIQDVGFVHETESILHDVDEEVKIDMITKHSEKIALAYGLLVTNADMPLVIIKNLRIC 583

Query: 623 EDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            DCH+  KF+S    + I++RD  RFH F  G+CSCGDYW
Sbjct: 584 RDCHNTVKFVSMVEKRTIIIRDTKRFHQFSGGLCSCGDYW 623



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 189/429 (44%), Gaps = 41/429 (9%)

Query: 53  NELIQSLCKQGNLRQALDVL-----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N L+  L K G L + L V        E    + T+  ++ +C    +  +   VH    
Sbjct: 115 NSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAM 174

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT--RRRTIYVWNALFRALTLAGRGEEV 165
             G   +  +V  L+N+Y  F  V+ A  +F +     ++I  WN++       G   E 
Sbjct: 175 KLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEA 234

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
              +  M     G   D  T   +L+AC      F L +  + +H  +   G +  + I+
Sbjct: 235 FNCFDMMR--VNGFFPDDATMVSLLQACE----NFPLGRMVEVLHGVIFTCGLDENLTIV 288

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           TTL+++Y++ G +  +  VF +++  + V+W+AM+A YA +G   EA+E F E I+    
Sbjct: 289 TTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFF-ERIVREEG 347

Query: 286 LCPNSVTMVSVLQACAALAALEQGK-----MIHGYILRRGLDSILPVVSALVTMYARCGK 340
           + P+ VT   +L AC+    +++GK     M   Y ++  LD      S +V +  RCG 
Sbjct: 348 MEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPRLDH----YSCMVDLLGRCGL 403

Query: 341 LELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVL 398
           L+    +  +M  + +   W +L+ +  VH       +  K +I   + PS P +++ + 
Sbjct: 404 LDDAHELIKNMPFEPNSGVWGALLGACRVHRNIDLGKEAAKNLI--ALDPSDPRNYIMLS 461

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPS----VEH----YACMVDLLGRAN------KLE 444
              S AGL  +   +   M+ + + R      +EH    +  +VD     +      KLE
Sbjct: 462 NMYSAAGLWNDASKVRTLMKNKVLTRNQGCSFIEHGNKIHRFVVDDYTHPDSHRIHKKLE 521

Query: 445 EAAKIIEDL 453
           E  K I+D+
Sbjct: 522 EVMKKIQDV 530


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/600 (36%), Positives = 344/600 (57%), Gaps = 15/600 (2%)

Query: 67  QALDVLSIEPNPTQHTYELLLLSCTH-HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY 125
            AL +  + PNP+  T+ + L S +   + L     +H+         +P ++T L+ +Y
Sbjct: 104 HALRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLY 163

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
           +    +  A+ VFD+    +   W AL  A   AG   E + + R  N    G+R D FT
Sbjct: 164 ARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVAR--NAFANGMRPDSFT 221

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
              VL AC       + L  G+ +  +  + G    V + T  +D+Y + G +  A  VF
Sbjct: 222 AVRVLTACAR----VADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVF 277

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
            +M  K+ V+W AM+  YA NG   EAL+LF  + M++  + P+   +   L AC  L A
Sbjct: 278 DKMRDKDAVAWGAMVGGYASNGHPREALDLF--LAMQAEGVRPDCYAVAGALSACTRLGA 335

Query: 306 LEQGKMIHGYILRRGLDSIL--PVV-SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           L+ G+     I     D  L  PV+ +AL+ MYA+CG       VF  M K+D++ WN++
Sbjct: 336 LDLGRQA---IRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAM 392

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           I   G+ G+   A  +  +M   GV  +  +F+ +L +C+H GL+++G+  F +M K + 
Sbjct: 393 ILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYH 452

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERAS 482
           I P +EHY C+VDLL RA  L+EA ++I+D+ +     + G+LLG C+IH N ELAE   
Sbjct: 453 ISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVL 512

Query: 483 KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSF 542
            +L  LEP N+GNYV+L+++Y+    W++  +++  ++ +G++KVP  S +E + K++ F
Sbjct: 513 TQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEF 572

Query: 543 VSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAF 602
              D+ HP  +Q++  L  L  EMK  GY P T+VV++D++ EEKE  ++ HSEKLA+AF
Sbjct: 573 RVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAF 632

Query: 603 GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            L+ T  GETIR+TKNLR+C DCH+  K IS+  ++EI+VRD NRFH FR+G CSC DYW
Sbjct: 633 NLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 143/385 (37%), Gaps = 50/385 (12%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS 95
           + L S T P  L+S     L+    + G L +A  V    P+P+  ++  L+ +      
Sbjct: 145 LKLPSHTNPHVLTS-----LLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGD 199

Query: 96  LSDALNVHSHLTDNGFDQDP-----------------------------------FLVTK 120
           L +A++V  +   NG   D                                    F+ T 
Sbjct: 200 LREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATA 259

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
            +++Y     +  AR VFDK R +    W A+       G   E L+L+  M     G+R
Sbjct: 260 AVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQ--AEGVR 317

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D +     L AC         L  G++    V    +     + T LIDMYA+ G    
Sbjct: 318 PDCYAVAGALSACTR----LGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAE 373

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF QM  K+++ W+AMI      G    A  L  +  ME   +  N  T + +L +C
Sbjct: 374 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQ--MEKSGVKLNDNTFIGLLCSC 431

Query: 301 AALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVS 358
                ++ G +  H       +   +     +V + +R G L+    + D M    + V 
Sbjct: 432 THTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVI 491

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMI 383
             +L+    +H     A  +  ++I
Sbjct: 492 LGALLGGCKIHRNAELAEHVLTQLI 516


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/652 (34%), Positives = 367/652 (56%), Gaps = 75/652 (11%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           N TQ+  + LL + +   S S A  +H+ +        P L++ ++++YS+ + + D+  
Sbjct: 2   NTTQNLCKTLLQNPSSVKSKSQAKQLHAQILRTSLPS-PSLLSTILSIYSNLNLLHDSLL 60

Query: 137 VFDK-TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
           +F+      T   W ++ R  T  G     L  + +M    +G   D   +  VLK+C  
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQM--LASGKYPDHNVFPSVLKSCTL 118

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV----------------- 238
                  L+ G+ +H  ++R G    ++    L++MY++F  +                 
Sbjct: 119 ----MKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSD 174

Query: 239 ---------MYAGF---VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
                     Y G    VF  M  +++VSW+ +I+  A+NGM  +AL + REM   + DL
Sbjct: 175 VYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREM--GNADL 232

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+S T+ SVL   A    L +GK IHGY +R G D+ + + S+L+ MYA+C +++    
Sbjct: 233 RPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCR 292

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI----------------------- 383
           VF  + + D +SWNS+I+    +G   + ++ F++M+                       
Sbjct: 293 VFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTT 352

Query: 384 -------------YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
                          GV P+ ++F++VL ACSHAGLV+E    F SM +++ I P +EHY
Sbjct: 353 LHLGKQLHGYIIRMEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHY 412

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
           A + DLLGR  +LEEA + I D+ IEP   VW +LL +CR+H N+ELAE+ SK+LF ++P
Sbjct: 413 AAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDP 472

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
            N G YVLL+++Y+AA  W + ++++  +  +G++K P  S IE+K K+++FV+ D+ HP
Sbjct: 473 QNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHP 532

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
            +++++  L  L  +M+ +GYV  T  VL+D++ E+K  ++  HSE+LA+ FG+I+T  G
Sbjct: 533 YYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAG 592

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            TIR+TKNLR+C DCH+ TKFISK   +EI+VRD +RFHHF++G CSCGD+W
Sbjct: 593 TTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 644


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/617 (36%), Positives = 350/617 (56%), Gaps = 60/617 (9%)

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS--VDDARHVFDKTRRRTIYVWNALFRA 155
           D   +H+     G  QDP    ++I  +  F S  +D AR VF +      + WN + R 
Sbjct: 34  DLKQLHAIFIKTGQIQDPLTAAEVIK-FCAFSSRDIDYARAVFRQMPEPNCFCWNTILRI 92

Query: 156 LTLAGR---GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
           L          E L L+  M   G  ++ +RFT+  VLKAC  +S     L+ GK+IH  
Sbjct: 93  LAETNDEHLQSEALMLFSAMLCDGR-VKPNRFTFPSVLKACARAS----RLREGKQIHGL 147

Query: 213 VLRHGYNGIVHIMTTLIDMYA--------------------------------------- 233
           +++ G++    +++ L+ MY                                        
Sbjct: 148 IVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLW 207

Query: 234 --------RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
                   R G +  A  +F +M  ++VVSW+ MI+ YA+NG   EA+ LF+EM  +S +
Sbjct: 208 NIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEM--QSSN 265

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           + PN VT+VSVL A A + ALE GK IH Y  +  ++    + SALV MY++CG ++   
Sbjct: 266 IDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKAL 325

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VF+ + KR+ ++W+++I ++ +HG    AI  F  M   GV+P+ ++++ +L ACSHAG
Sbjct: 326 QVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAG 385

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           LVEEG+  F  M K   ++P +EHY CMVDLLGRA  LEEA ++I ++ IEP   +W +L
Sbjct: 386 LVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKAL 445

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           LG+C++H N+++ ER ++ L EL P ++G+YV L+++YA+   W+ V RV+  ++   ++
Sbjct: 446 LGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIR 505

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K PG S IE+   ++ F+  D+ H + +++ A+L  +S +++  GY P T  V  + D +
Sbjct: 506 KDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQ 565

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           E+ R +  HSEK+AVAFGLI+T+    ++I KNLR+CEDCH+  K IS    ++I+VRD 
Sbjct: 566 ERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDR 625

Query: 646 NRFHHFRNGVCSCGDYW 662
            RFH F +G CSC DYW
Sbjct: 626 KRFHQFEHGSCSCMDYW 642



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 142/341 (41%), Gaps = 57/341 (16%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY------------ 125
           P + T+  +L +C   + L +   +H  +   GF +D F+++ L+ +Y            
Sbjct: 120 PNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSL 179

Query: 126 -----SHFD------------------------------SVDDARHVFDKTRRRTIYVWN 150
                  FD                               +  A+++FD+   R++  WN
Sbjct: 180 FCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWN 239

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
            +       G   E + L++ M    + I  +  T   VL A          L+ GK IH
Sbjct: 240 VMISGYAQNGHFIEAINLFQEMQ--SSNIDPNYVTLVSVLPAIAR----IGALELGKWIH 293

Query: 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAF 270
               ++       + + L+DMY++ G +  A  VF  +  +N ++WSA+I  +A +G A 
Sbjct: 294 LYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAE 353

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR-RGLDSILPVVS 329
           +A+  F   +M    + PN V  + +L AC+    +E+G+    ++++  GL   +    
Sbjct: 354 DAIIHFH--LMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYG 411

Query: 330 ALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
            +V +  R G LE  + +  +M  + D V W +L+ +  +H
Sbjct: 412 CMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMH 452



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 109/282 (38%), Gaps = 50/282 (17%)

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
           NL Q +   +I+PN    T   +L +     +L     +H +   N  + D  L + L++
Sbjct: 256 NLFQEMQSSNIDPNYV--TLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVD 313

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +YS   S+D A  VF+   +R    W+A+  A  + GR E+ +  +  M     G+  + 
Sbjct: 314 MYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMG--KAGVTPND 371

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR---FGCVMY 240
             Y  +L AC                HA ++  G +   H M  ++ +  R   +GC   
Sbjct: 372 VAYIGILSACS---------------HAGLVEEGRSFFSH-MVKVVGLQPRIEHYGC--- 412

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
                             M+    R G   EA EL R M +E     P+ V   ++L AC
Sbjct: 413 ------------------MVDLLGRAGHLEEAEELIRNMPIE-----PDDVIWKALLGAC 449

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
                L+ G+ +   ++          V AL  +YA  G  E
Sbjct: 450 KMHKNLKMGERVAETLMELAPHDSGSYV-ALSNLYASLGNWE 490


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/586 (37%), Positives = 349/586 (59%), Gaps = 9/586 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L +C H   LS A  +++++   GF  +  +   LI+VY+    +  AR V
Sbjct: 305 PDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDV 364

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+    +    WN++      +G   E ++L++ M       ++D  TY  +    ++ S
Sbjct: 365 FNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEE--QADHITYLML----ISLS 418

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
              + LK GK +H++ ++ G    + +   LIDMYA+ G V  +  +F+ M   + V+W+
Sbjct: 419 TRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWN 478

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            +I+   R G     L++  +M    + + P+  T +  L  CA+LAA   GK IH  +L
Sbjct: 479 TVISACVRFGDFATGLQVTTQM--RKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLL 536

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R G +S L + +AL+ MY++CG LE    VF+ M +RDVV+W  +I +YG++G G KA++
Sbjct: 537 RFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALE 596

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
            F +M   G+ P  + F++++ ACSH+GLVE+G   FE M+  + I P +EHYAC+VDLL
Sbjct: 597 SFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLL 656

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            R+ K+ +A + I+ + IEP   +W S+L +CR   ++E AER S+R+ EL P + G  +
Sbjct: 657 SRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSI 716

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           L ++ YAA   WD+V  +++ +  + ++K PG S IE+ +K++ F S D+  PQ E +H 
Sbjct: 717 LASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHK 776

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDL-DAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
            L  L + M ++GY+P ++ V  +L + EEK R++ GHSE+LA+AFGL+NT  G  +++ 
Sbjct: 777 SLEILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVM 836

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH  TK ISK   +EILVRD NRFH F++G+CSC D W
Sbjct: 837 KNLRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCKDRW 882



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 202/378 (53%), Gaps = 14/378 (3%)

Query: 91  THHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK-TRRRTIYVW 149
           +  ++L++   +H+ +   G D   F   KLI+ YSHF +   +  VF + +  + +Y+W
Sbjct: 15  SSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIW 74

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
           N++ RA +  G   + LE Y ++    + +  D++T+  V+KAC     G    + G  +
Sbjct: 75  NSIIRAFSKNGWFPKALEFYGKLR--ESKVSPDKYTFPSVIKACA----GLFDAEMGDLV 128

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           +  +L  G+   +++   L+DMY+R G +  A  VF +M V+++VSW+++I+ Y+ +G  
Sbjct: 129 YKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EALE++ E  + +  + P+S T+ SVL A A L  ++QG+ +HG+ L+ G++S+  V +
Sbjct: 189 EEALEIYHE--LRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNN 246

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
            L+ MY +  +    + VFD M  RD V++N++I  Y       +++++F E +     P
Sbjct: 247 GLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENL-DQFKP 305

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESM-RKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
             ++  SVL AC H   +   K ++  M R   ++  +V++   ++D+  +   +  A  
Sbjct: 306 DILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKN--ILIDVYAKCGDMITARD 363

Query: 449 IIEDLRIEPGPKVWGSLL 466
           +   +  +     W S++
Sbjct: 364 VFNSMECKDTVS-WNSII 380



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 209/422 (49%), Gaps = 17/422 (4%)

Query: 53  NELIQSLCKQGNLRQALD----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I++  K G   +AL+    +   + +P ++T+  ++ +C           V+  + +
Sbjct: 75  NSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILE 134

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF+ D ++   L+++YS    +  AR VFD+   R +  WN+L    +  G  EE LE+
Sbjct: 135 MGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEI 194

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           Y  +  +   I  D FT + VL A         ++K G+ +H   L+ G N +  +   L
Sbjct: 195 YHELRNSW--IVPDSFTVSSVLPAFA----NLLVVKQGQGLHGFTLKSGVNSVSVVNNGL 248

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           + MY +F     A  VF +M V++ V+++ MI  Y +  M  E++++F E +       P
Sbjct: 249 LAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENL---DQFKP 305

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + +T+ SVL AC  L  L   K I+ Y+LR G      V + L+ +YA+CG +   + VF
Sbjct: 306 DILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVF 365

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + M+ +D VSWNS+IS Y   G   +A+++FK M+        I+++ ++   +    ++
Sbjct: 366 NSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLK 425

Query: 409 EGKMLFESMRKEHM-IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
            GK L  +  K  + I  SV +   ++D+  +  ++ ++ KI   +        W +++ 
Sbjct: 426 FGKGLHSNGIKSGIYIDLSVSN--ALIDMYAKCGEVGDSLKIFNSMGT-LDTVTWNTVIS 482

Query: 468 SC 469
           +C
Sbjct: 483 AC 484



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 129/232 (55%), Gaps = 7/232 (3%)

Query: 183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG 242
           R +  ++ +A  +SS     L   + IHA V+  G +G       LID Y+ F     + 
Sbjct: 4   RVSSAFISRALSSSSN----LNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSL 59

Query: 243 FVFSQMA-VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
            VF +++  KNV  W+++I  +++NG   +ALE + ++      + P+  T  SV++ACA
Sbjct: 60  SVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKL--RESKVSPDKYTFPSVIKACA 117

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            L   E G +++  IL  G +S L V +ALV MY+R G L   + VFD M  RD+VSWNS
Sbjct: 118 GLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNS 177

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           LIS Y  HGY  +A++I+ E+    + P   +  SVL A ++  +V++G+ L
Sbjct: 178 LISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGL 229



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 6/161 (3%)

Query: 37  SLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS-IEPN---PTQHTYELLLLSCTH 92
           SL    +  +L +   N +I +  + G+    L V + +  N   P   T+ + L  C  
Sbjct: 462 SLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCAS 521

Query: 93  HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
             +      +H  L   G++ +  +   LI +YS    ++ +  VF++  RR +  W  +
Sbjct: 522 LAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGM 581

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
             A  + G GE+ LE +  M    +GI  D   +  ++ AC
Sbjct: 582 IYAYGMYGEGEKALESFVDME--KSGIVPDSVVFIALIYAC 620


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 356/622 (57%), Gaps = 64/622 (10%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYS----HFDSVDDARHVFDKTRRRTIYVWN 150
           ++ D   +H+    +G  +D     +++   +    H   +D A  +F++  +R  + WN
Sbjct: 35  TIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWN 94

Query: 151 ALFRALTLAGRGEEVLEL---YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGK 207
            + R  + +   + ++ +   Y  M  +   +  +RFT+  VLKAC  +      ++ GK
Sbjct: 95  TIIRGFSESDEDKALIAITLFYEMM--SDEFVEPNRFTFPSVLKACAKTG----KIQEGK 148

Query: 208 EIHASVLRHGYNGIVHIMTTL--------------------------------------- 228
           +IH   L++G+ G   +M+ L                                       
Sbjct: 149 QIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEI 208

Query: 229 ------IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
                 ID Y R G    A  +F +M  ++VVSW+ MI+ Y+ NG   +A+E+FREM  +
Sbjct: 209 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM--K 266

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARCGK 340
             D+ PN VT+VSVL A + L +LE G+ +H Y    G+  D +L   SAL+ MY++CG 
Sbjct: 267 KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLG--SALIDMYSKCGI 324

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +E    VF+ + + +V++W+++I+ + +HG  G AI  F +M   GV PS ++++++L A
Sbjct: 325 IEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 384

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
           CSH GLVEEG+  F  M     + P +EHY CMVDLLGR+  L+EA + I ++ I+P   
Sbjct: 385 CSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDV 444

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
           +W +LLG+CR+  NVE+ +R +  L ++ P ++G YV L+++YA+   W EV  ++  ++
Sbjct: 445 IWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMK 504

Query: 521 ARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY 580
            + ++K PG S I++   ++ FV  D+ HP+ ++++++L+ +S +++  GY P T  VL 
Sbjct: 505 EKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLL 564

Query: 581 DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEI 640
           +L+ E+KE ++  HSEK+A AFGLI+TS G+ IRI KNLR+CEDCHS  K ISK   ++I
Sbjct: 565 NLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKI 624

Query: 641 LVRDVNRFHHFRNGVCSCGDYW 662
            VRD  RFHHF++G CSC DYW
Sbjct: 625 TVRDRKRFHHFQDGSCSCMDYW 646



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 154/362 (42%), Gaps = 60/362 (16%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           +EPN  + T+  +L +C     + +   +H      GF  D F+++ L+ +Y     + D
Sbjct: 124 VEPN--RFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKD 181

Query: 134 ---------------------------------------------ARHVFDKTRRRTIYV 148
                                                        AR +FDK R+R++  
Sbjct: 182 ARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVS 241

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           WN +    +L G  ++ +E++R M      IR +  T   VL A          L+ G+ 
Sbjct: 242 WNTMISGYSLNGFFKDAVEVFREMK--KGDIRPNYVTLVSVLPAISR----LGSLELGEW 295

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           +H      G      + + LIDMY++ G +  A  VF ++  +NV++WSAMI  +A +G 
Sbjct: 296 LHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQ 355

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR-RGLDSILPV 327
           A +A++ F +  M    + P+ V  +++L AC+    +E+G+     ++   GL+  +  
Sbjct: 356 AGDAIDCFCK--MRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEH 413

Query: 328 VSALVTMYARCGKL-ELGQCVFDHMDKRDVVSWNSLISSYGVHG---YGGKAIQIFKEMI 383
              +V +  R G L E  + + +   K D V W +L+ +  + G    G +   I  +M+
Sbjct: 414 YGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMV 473

Query: 384 YH 385
            H
Sbjct: 474 PH 475



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 113/302 (37%), Gaps = 68/302 (22%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I      G  + A++V        I PN    T   +L + +   SL     +H + 
Sbjct: 243 NTMISGYSLNGFFKDAVEVFREMKKGDIRPNYV--TLVSVLPAISRLGSLELGEWLHLYA 300

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
            D+G   D  L + LI++YS    ++ A HVF++  R  +  W+A+     + G+  + +
Sbjct: 301 EDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAI 360

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           + + +M     G+R     Y  +L AC           HG                    
Sbjct: 361 DCFCKMR--QAGVRPSDVAYINLLTAC----------SHG-------------------- 388

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKN-----VVSWSAMIACYARNGMAFEALELFREMIM 281
                    G V      FSQM   +     +  +  M+    R+G+  EA E    M +
Sbjct: 389 ---------GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPI 439

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS----ALVTMYAR 337
           +     P+ V   ++L AC     +E GK +   ++      ++P  S    AL  MYA 
Sbjct: 440 K-----PDDVIWKALLGACRMQGNVEMGKRVANILM-----DMVPHDSGAYVALSNMYAS 489

Query: 338 CG 339
            G
Sbjct: 490 QG 491


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/628 (34%), Positives = 373/628 (59%), Gaps = 34/628 (5%)

Query: 57  QSLCKQGNLRQALDVLSIEPNPTQH-TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           +++ K  +    LD +  + +   H T + L   C + N+L     +H+ +   G     
Sbjct: 125 RNITKSSSNSNFLDFMKPKNHIFNHPTLQTLQQKCNNFNTLKQ---IHTQIITTGLSFQT 181

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV---LELYRRM 172
           + ++ LI + S F+ +  A  +F+     TI+++N L  +L       ++     LY ++
Sbjct: 182 YCLSHLIKISSKFN-LPYAFKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKI 240

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH---GYNGIVHIMTTLI 229
             T   ++ + FT+  + KAC ++    S   +G  +H  VL+     ++  V    +L+
Sbjct: 241 -LTNKNLQPNSFTFPSLFKACCSNQ---SWFHYGPLLHTHVLKFLQPPFDNFVQ--ASLL 294

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN-------------GMAFEALELF 276
           + YA++G +  + ++F ++   ++ +W+ ++  YAR+               + E+L LF
Sbjct: 295 NFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLF 354

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
           R+M  +   + PN VT+V+++ AC+ L A+ QG  +H ++LR  +     V +A V MY+
Sbjct: 355 RDM--QVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYS 412

Query: 337 RCGKLELGQCVFDHM--DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           +CG L L   VFD M  + RD   + ++I  + VHGYG +A++++++M + G+ P   +F
Sbjct: 413 KCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATF 472

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           V  + ACSH GLVEEG  +F+SM++ H + P +EHY C++DLLGRA +L+EA + + D+ 
Sbjct: 473 VVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMP 532

Query: 455 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514
           ++P   +W SLLG+ RIH N+ + E A  +L ELEP  +GNYVLL+++YA+    ++VKR
Sbjct: 533 MKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKR 592

Query: 515 VKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQ 574
           V++L++  G+ K+PG S +E+K  M+ F++ D  HP  ++++  +  +++ ++E G+  +
Sbjct: 593 VRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKAR 652

Query: 575 TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
           T   L+DL+ E+KE ++  HSE+LA+AF LI +     IRI KNLR+C DCH+FTK IS 
Sbjct: 653 TSEALFDLEEEDKEGVLSYHSERLAIAFALIASPSSLAIRIIKNLRVCGDCHAFTKLISV 712

Query: 635 FANKEILVRDVNRFHHFRNGVCSCGDYW 662
             ++EI+VRD NRFHHF++G CSC DYW
Sbjct: 713 AYHREIIVRDRNRFHHFKDGSCSCLDYW 740


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/646 (34%), Positives = 357/646 (55%), Gaps = 55/646 (8%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNP----TQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++ +L + G  R+AL V     N        TY   L +C   +SL     +H+ +  
Sbjct: 263 NMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIR 322

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +    DP++ + ++ +Y+      +AR VF   R R    W  L       G   E LEL
Sbjct: 323 SLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLEL 382

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL-LKHGKEIHASVLRHGYNGIVHIMTT 227
           + +M       R++  T      A + S C   + +   +++H+  L+ G+   V I  +
Sbjct: 383 FNQM-------RAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNS 435

Query: 228 LIDMYARFGCVMYAGFVFSQM-------------------------------AVKNVVSW 256
           LI MYA+ G +  A  +FS M                               + +NV++W
Sbjct: 436 LISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITW 495

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AM+  Y ++G   + L+++  M+ E  D+ P+ VT V++ + CA + A + G  I G+ 
Sbjct: 496 NAMLGAYIQHGAEEDGLKMYSAMLTEK-DVIPDWVTYVTLFRGCADMGANKLGDQITGHT 554

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++ GL     V++A++TMY++CG++   + +FD + ++D+VSWN++I+ Y  HG G +AI
Sbjct: 555 VKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAI 614

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           +IF +M+  G  P  IS+V+VL +CSH+GLV+EGK  F+ ++++H + P +EH++CMVDL
Sbjct: 615 EIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDL 674

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           L RA  L EA  +I+++ ++P  +VWG+LL +C+ H N ELAE A+K LF+L+  ++G Y
Sbjct: 675 LARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGY 734

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           +LLA +YA A    +  +V++L+  +G++K PG S +EVK K++ F + D  HPQ   + 
Sbjct: 735 MLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIR 794

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  L  ++ + GYV             E  R  + HSEKLAVAFG++N      I I 
Sbjct: 795 EKLDELMEKIAQLGYVRT-----------ESLRSEIHHSEKLAVAFGIMNLPAWMPIHIM 843

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+  K IS    +E ++RD  RFHHF+ G CSCGDYW
Sbjct: 844 KNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 190/417 (45%), Gaps = 48/417 (11%)

Query: 53  NELIQSLCKQGNLRQALDVL-----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N L+    + G    A++       S +  P   T+   + SC        AL +   LT
Sbjct: 130 NTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLT 189

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV------------------- 148
             GF  DP + T +++++    +VD A   F +  R T++                    
Sbjct: 190 KFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALE 249

Query: 149 ------------WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
                       WN +  AL+ +GR  E L +   M+  G  +R D  TYT  L AC   
Sbjct: 250 LFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRG--VRLDSTTYTSSLTACAK- 306

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
               S L  GK++HA V+R       ++ + ++++YA+ GC   A  VFS +  +N VSW
Sbjct: 307 ---LSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSW 363

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + +I  + + G   E+LELF +M  E   +  +   + +++  C+    +   + +H   
Sbjct: 364 TVLIGGFLQYGCFSESLELFNQMRAEL--MTVDQFALATIISGCSNRMDMCLARQLHSLS 421

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           L+ G    + + ++L++MYA+CG L+  + +F  M++RD+VSW  ++++Y   G  GKA 
Sbjct: 422 LKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAR 481

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           + F  M    V    I++ ++LGA    G  E+G  ++ +M  E  + P    Y  +
Sbjct: 482 EFFDGMSTRNV----ITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTL 534



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 155/324 (47%), Gaps = 42/324 (12%)

Query: 114 DPFLVTK--LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR 171
           +P ++T   ++N Y+   S+ DA  +F +  RR +  WN L      +GR  + +E +  
Sbjct: 92  EPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVS 151

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           M  +G  +  + FT+   +K+C A        +   ++   + + G+ G   + T ++DM
Sbjct: 152 MRRSGDSL-PNAFTFGCAMKSCGA----LGWHEVALQLLGLLTKFGFQGDPDVATGIVDM 206

Query: 232 YARFGCVMYAGFVFSQ-------------------------------MAVKNVVSWSAMI 260
           + R G V +A   FSQ                               M  ++VVSW+ M+
Sbjct: 207 FVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMV 266

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           +  +++G A EAL +  +  M +  +  +S T  S L ACA L++L  GK +H  ++ R 
Sbjct: 267 SALSQSGRAREALSVAVD--MHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVI-RS 323

Query: 321 LDSILP-VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           L  I P V SA+V +YA+CG  +  + VF  +  R+ VSW  LI  +  +G   +++++F
Sbjct: 324 LPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELF 383

Query: 380 KEMIYHGVSPSPISFVSVLGACSH 403
            +M    ++    +  +++  CS+
Sbjct: 384 NQMRAELMTVDQFALATIISGCSN 407



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 125/281 (44%), Gaps = 38/281 (13%)

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
           N I H    +++ YA+ G +  A  +F +M  ++V SW+ +++ Y ++G   +A+E F  
Sbjct: 94  NVITH--NIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVS 151

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M   S D  PN+ T    +++C AL   E    + G + + G      V + +V M+ RC
Sbjct: 152 M-RRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRC 210

Query: 339 GKLELGQ------------C-------------------VFDHMDKRDVVSWNSLISSYG 367
           G ++               C                   +F+ M +RDVVSWN ++S+  
Sbjct: 211 GAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALS 270

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHMIRPS 426
             G   +A+ +  +M   GV     ++ S L AC+    +  GK L  + +R    I P 
Sbjct: 271 QSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPY 330

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           V   + MV+L  +    +EA ++   LR +     W  L+G
Sbjct: 331 VA--SAMVELYAKCGCFKEARRVFSSLR-DRNTVSWTVLIG 368



 Score = 38.9 bits (89), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 34/189 (17%)

Query: 293 MVSVLQACA--------------------ALAALEQGKMIHGYI----------LRRGLD 322
           +   L++C                     A A   Q  ++H Y+          L RG  
Sbjct: 31  LADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDI 90

Query: 323 SILPVVSALVTM--YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           +   V++  + M  YA+ G L   + +F  M +RDV SWN+L+S Y   G    A++ F 
Sbjct: 91  TEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFV 150

Query: 381 EMIYHGVS-PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
            M   G S P+  +F   + +C   G  E    L   + K    +   +    +VD+  R
Sbjct: 151 SMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTK-FGFQGDPDVATGIVDMFVR 209

Query: 440 ANKLEEAAK 448
              ++ A+K
Sbjct: 210 CGAVDFASK 218


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/512 (40%), Positives = 314/512 (61%), Gaps = 37/512 (7%)

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY--------- 232
           D FT ++VLKAC+      S + +GK IH    + G+   + +   ++++Y         
Sbjct: 9   DTFTCSFVLKACLK----LSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDA 64

Query: 233 ----------------------ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAF 270
                                 A+ G +  A   F +M  KNV SW++MI+ + + G   
Sbjct: 65  MLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPN 124

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
           EA++LF  M +E   + PN VT+VSVL ACA L  L+ G+++H Y  + G    + V + 
Sbjct: 125 EAIDLF--MKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNT 182

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           L+ MY +CG LE  + VF  M++R VVSW+++I+   +HG   +A+ +F EMI  GV P+
Sbjct: 183 LIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPN 242

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
            ++F+ +L ACSH GL++EG+  F SM  ++ + P +EHY C+VDL  RA  LEEA + I
Sbjct: 243 GVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFI 302

Query: 451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWD 510
             + I+P   VWG+LLG C++H N++LAE A K L EL+P N G YV+++++YA A+ W+
Sbjct: 303 LSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWE 362

Query: 511 EVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKG 570
           +  RV++L++ RG++K  G S I V   ++ FV+ D+ HPQ E +  +   L  +MK +G
Sbjct: 363 DAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRG 422

Query: 571 YVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTK 630
           Y P+T VVL D++ +EKE+ +  HSEKLAV FGL+ T +G  IRI KNLR+CEDCH+  K
Sbjct: 423 YAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALK 482

Query: 631 FISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            IS   ++EI+VRD NRFH FR+G CSC D+W
Sbjct: 483 IISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 150/349 (42%), Gaps = 45/349 (12%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   +L +C   + + +   +H      GF  + FL   ++N+Y     + DA  +
Sbjct: 8   PDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLL 67

Query: 138 FDKTRRRTIYVWN-------------------------------ALFRALTLAGRGEEVL 166
           F+K  +R    WN                               ++       G+  E +
Sbjct: 68  FEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAI 127

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +L+ ++      +R +  T   VL AC         L  G+ +H    + G+   VH+  
Sbjct: 128 DLFMKLEDEA--VRPNEVTVVSVLAACA----DLGDLDLGRIVHEYSTKSGFKRNVHVCN 181

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           TLIDMY + GC+  A  VF +M  + VVSWSAMIA  A +G A EAL LF EMI     +
Sbjct: 182 TLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMI--KLGV 239

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELG- 344
            PN VT + +L AC+ +  +++G+     +    G+   +     +V +++R G LE   
Sbjct: 240 KPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAH 299

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           + +     K + V W +L+    VH    K I + +E I H     P++
Sbjct: 300 EFILSMPIKPNGVVWGALLGGCKVH----KNIDLAEEAIKHLSELDPLN 344



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 33/229 (14%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           M   D+ P++ T   VL+AC  L+ +  GK IHG   + G  S L + + ++ +Y  CG+
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 341 LELGQCVFDHMDKRDVVSWN-------------------------------SLISSYGVH 369
           +     +F+ M +RD V+WN                               S+IS +   
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G   +AI +F ++    V P+ ++ VSVL AC+  G ++ G+++ E   K    R +V  
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKR-NVHV 179

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
              ++D+  +   LE A ++  ++  E     W +++    +H   E A
Sbjct: 180 CNTLIDMYVKCGCLENARRVFYEME-ERTVVSWSAMIAGLAMHGQAEEA 227



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 14/219 (6%)

Query: 50  RNKNELIQSLCKQGNLRQALDV-LSIEPN---PTQHTYELLLLSCTHHNSLSDALNVHSH 105
           R+   +I    + G   +A+D+ + +E     P + T   +L +C     L     VH +
Sbjct: 108 RSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEY 167

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
            T +GF ++  +   LI++Y     +++AR VF +   RT+  W+A+   L + G+ EE 
Sbjct: 168 STKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEA 227

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI- 224
           L L+  M     G++ +  T+  +L AC        L+  G+   AS +   Y  I  I 
Sbjct: 228 LCLFSEM--IKLGVKPNGVTFIGLLHACSH----MGLIDEGRRFFAS-MTADYGVIPQIE 280

Query: 225 -MTTLIDMYARFGCVMYA-GFVFSQMAVKNVVSWSAMIA 261
               ++D+++R G +  A  F+ S     N V W A++ 
Sbjct: 281 HYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLG 319


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/458 (42%), Positives = 307/458 (67%), Gaps = 3/458 (0%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           G+ IH+ V+R G+  ++++  +L+ +YA  G V  A  VF +M  K++V+W+++I  +A 
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           NG   EAL L+ EM   S  + P+  T+VS+L ACA + AL  GK +H Y+++ GL   L
Sbjct: 67  NGKPEEALALYTEM--NSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNL 124

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM-IY 384
              + L+ +YARCG++E  + +FD M  ++ VSW SLI    V+G+G +AI++FK M   
Sbjct: 125 HSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMEST 184

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            G+ P  I+FV +L ACSH G+V+EG   F  MR+E+ I P +EH+ CMVDLL RA +++
Sbjct: 185 EGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVK 244

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
           +A + I+ + ++P   +W +LLG+C +H + +LAE A  ++ +LEP ++G+YVLL+++YA
Sbjct: 245 KAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYA 304

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
           +   W +V+++++ +   G++KVPG S +EV  +++ F+  D+ HPQ + ++A L  ++ 
Sbjct: 305 SEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTG 364

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
            ++ +GYVPQ   V  D++ EEKE  V+ HSEK+A+AF LI+T +   I + KNLR+C D
Sbjct: 365 RLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCAD 424

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH   K +SK  N+EI+VRD +RFHHF+NG CSC DYW
Sbjct: 425 CHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 135/276 (48%), Gaps = 17/276 (6%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            +HS +  +GF    ++   L+++Y++   V  A  VFDK   + +  WN++       G
Sbjct: 9   TIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENG 68

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
           + EE L LY  MN  G  I+ D FT   +L AC         L  GK +H  +++ G   
Sbjct: 69  KPEEALALYTEMNSKG--IKPDGFTIVSLLSACAK----IGALTLGKRVHVYMIKVGLTR 122

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            +H    L+D+YAR G V  A  +F +M  KN VSW+++I   A NG   EA+ELF+ M 
Sbjct: 123 NLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM- 181

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQG-----KMIHGYILRRGLDSILPVVSALVTMY 335
             +  L P  +T V +L AC+    +++G     +M   Y +   ++        +V + 
Sbjct: 182 ESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHF----GCMVDLL 237

Query: 336 ARCGKLELGQCVFDHMDKR-DVVSWNSLISSYGVHG 370
           AR G+++        M  + +VV W +L+ +  VHG
Sbjct: 238 ARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 273



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 93/164 (56%), Gaps = 2/164 (1%)

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           +A +  G+ IH  ++R G  S++ V ++L+ +YA CG +     VFD M ++D+V+WNS+
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           I+ +  +G   +A+ ++ EM   G+ P   + VS+L AC+  G +  GK +   M K  +
Sbjct: 61  INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 120

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
            R ++     ++DL  R  ++EEA  + +++ ++     W SL+
Sbjct: 121 TR-NLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 162



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 110/255 (43%), Gaps = 18/255 (7%)

Query: 17  YHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEP 76
           Y  NS+ HL      V     +        L + N   +I    + G   +AL  L  E 
Sbjct: 24  YVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNS--VINGFAENGKPEEAL-ALYTEM 80

Query: 77  N-----PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV 131
           N     P   T   LL +C    +L+    VH ++   G  ++      L+++Y+    V
Sbjct: 81  NSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRV 140

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
           ++A+ +FD+   +    W +L   L + G G+E +EL++ M  T  G+     T+  +L 
Sbjct: 141 EEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMEST-EGLLPCEITFVGILY 199

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI--MTTLIDMYARFGCVMYAGFVFSQMA 249
           AC  S CG  ++K G E +   +R  Y     I     ++D+ AR G V  A      M 
Sbjct: 200 AC--SHCG--MVKEGFE-YFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP 254

Query: 250 VK-NVVSWSAMI-AC 262
           ++ NVV W  ++ AC
Sbjct: 255 MQPNVVIWRTLLGAC 269


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/645 (34%), Positives = 361/645 (55%), Gaps = 45/645 (6%)

Query: 51  NKNELIQSLCKQGNLRQAL--DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
            K+E ++ LC  G LR AL      +  +     +  L  +C    +L     +H+    
Sbjct: 76  TKDEFVR-LCATGRLRDALRRPFRGVLWSDAARLFSHLFRAC---RALRPLRQLHAFAAT 131

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF--------------- 153
           +G   D F    L+  Y+    +  AR +F++  RR +  WN LF               
Sbjct: 132 SGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKL 191

Query: 154 ----------------RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
                             LT  G  EE L  +  M   G  +  D F    V + C    
Sbjct: 192 FDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREG--MHPDEFGLGSVFRCCA--- 246

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G   +  G+++HA V+R G +  + + ++L  MY R GC+     V   +   ++VS +
Sbjct: 247 -GLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCN 305

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            +IA   +NG +  ALE F   +M S  +  + VT VS + +C+ LAAL QG+ IHG ++
Sbjct: 306 TIIAGRTQNGDSEGALEYF--CMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVM 363

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G+D ++PV++ LV MY+RCG L   + VF      D    +++IS+YG HG+G KAI+
Sbjct: 364 KAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIE 423

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +FK+M+  G  PS ++F+++L ACSH+GL EEG   FE M K + ++PSV+HY C+VDLL
Sbjct: 424 LFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLL 483

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GR+  L+EA  +I  + + P   +W +LL +C+   N ++AER +KR+ EL+P ++ +YV
Sbjct: 484 GRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYV 543

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++ A +  W +V  V++ +    ++K PG S +E+K  ++ F + DE HP+ +++  
Sbjct: 544 LLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDE 603

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  + A++++ GY P   +VL+D++ EEKE  +  HSEKLA+AF  ++  +G  IR+ K
Sbjct: 604 CLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMK 663

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C+DCH   K +S+   +EI+VRDV+RFHHF++G CSC DYW
Sbjct: 664 NLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 106/248 (42%), Gaps = 15/248 (6%)

Query: 46  SLSSRNKNELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALN 101
           SLS  + N +I    + G+   AL+      S+       T+   + SC+   +L+    
Sbjct: 298 SLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQ 357

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +H  +   G D+   ++T L+++YS    + D+  VF        ++ +A+  A    G 
Sbjct: 358 IHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGH 417

Query: 162 GEEVLELYRR-MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYN 219
           G++ +EL+++ MNG   G      T+  +L AC  S     L + G +    + + +G  
Sbjct: 418 GQKAIELFKQMMNG---GAEPSDVTFLALLYACSHS----GLKEEGMDCFELMTKTYGMQ 470

Query: 220 GIVHIMTTLIDMYARFGCVMYA-GFVFSQMAVKNVVSWSAMI-ACYARNGMAFEALELFR 277
             V   T ++D+  R GC+  A   + S     + V W  ++ AC  +           R
Sbjct: 471 PSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKR 530

Query: 278 EMIMESHD 285
            + ++ HD
Sbjct: 531 VIELDPHD 538


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/585 (37%), Positives = 337/585 (57%), Gaps = 16/585 (2%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L  C+    L     VH  +   GFD    +   +I++YS    V +A  VF+    R 
Sbjct: 10  ILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRN 69

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  WNA+    T    GEE L L+R M   G     D +TY+  LKAC   SC       
Sbjct: 70  VISWNAMIAGYTNERNGEEALNLFREMREKGE--VPDGYTYSSSLKAC---SCA-DAAGE 123

Query: 206 GKEIHASVLRHGYNGIVH--IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
           G +IHA+++RHG+  +    +   L+D+Y +   +  A  VF ++  K+V+SWS +I  Y
Sbjct: 124 GMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGY 183

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           A+     EA++LFRE+    H +  +   + S++   A  A LEQGK +H Y ++     
Sbjct: 184 AQEDNLKEAMDLFRELRESRHRM--DGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGL 241

Query: 324 I-LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
           + + V ++++ MY +CG       +F  M +R+VVSW  +I+ YG HG G KA+++F EM
Sbjct: 242 LEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEM 301

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
             +G+ P  +++++VL ACSH+GL++EGK  F  +     I+P VEHYACMVDLLGR  +
Sbjct: 302 QENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGR 361

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           L+EA  +IE + ++P   +W +LL  CR+H +VE+ ++  + L   E  N  NYV+++++
Sbjct: 362 LKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNM 421

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           YA A  W E ++++  L+ +GL+K  GRS +E+ ++++ F + D  HP  E++H +L  +
Sbjct: 422 YAHAGYWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEM 481

Query: 563 SAEMKEK-GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS---KGE-TIRITK 617
              +KE+ GYV      L+D++ E K   +  HSEKLA+   L+      KGE  IRI K
Sbjct: 482 EKRVKEEMGYVHSINFSLHDVEEESKMESLRVHSEKLAIGLVLVRRGLKLKGERVIRIFK 541

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH+F K +SK      +VRD NRFH F NG+CSCGDYW
Sbjct: 542 NLRVCGDCHAFIKGLSKVLKIAFVVRDANRFHRFENGLCSCGDYW 586



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 186/359 (51%), Gaps = 24/359 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTK-----LINVYSHFDSVD 132
           P  +TY   L +C+  ++  + + +H+ L  +GF   P+L        L+++Y     + 
Sbjct: 103 PDGYTYSSSLKACSCADAAGEGMQIHAALIRHGF---PYLAQSAVAGALVDLYVKCRRMA 159

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           +AR VFD+   +++  W+ L          +E ++L+R +  +    R D F    VL +
Sbjct: 160 EARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRH--RMDGF----VLSS 213

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGI-VHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
            +     F+LL+ GK++HA  ++  Y  + + +  +++DMY + G  + A  +F +M  +
Sbjct: 214 IIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLER 273

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           NVVSW+ MI  Y ++G+  +A+ELF E  M+ + + P+SVT ++VL AC+    +++GK 
Sbjct: 274 NVVSWTVMITGYGKHGIGNKAVELFNE--MQENGIEPDSVTYLAVLSACSHSGLIKEGKK 331

Query: 312 IHGYILRRGLDSILPVV---SALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYG 367
               +       I P V   + +V +  R G+L+  + + + M  K +V  W +L+S   
Sbjct: 332 YFSILCSN--QKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCR 389

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
           +HG      Q+  E++      +P ++V V    +HAG  +E + + E+++++ + + +
Sbjct: 390 MHGDVEMGKQV-GEILLRREGNNPANYVMVSNMYAHAGYWKESEKIRETLKRKGLKKEA 447


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/645 (34%), Positives = 355/645 (55%), Gaps = 53/645 (8%)

Query: 53  NELIQSLCKQGNLRQALD-VLSIEPNPTQ---HTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++ +L + G +R+ALD V+ ++    +    TY   L +C   +SL     +H+ +  
Sbjct: 259 NMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIR 318

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           N    DP++ + L+ +Y+      +A+ VF+    R    W  L       G   E +EL
Sbjct: 319 NLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVEL 378

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M      +  D+F    ++  C    C    L  G+++H+  L+ G    V +  +L
Sbjct: 379 FNQMRAELMTL--DQFALATLISGC----CSRMDLCLGRQLHSLCLKSGQIQAVVVSNSL 432

Query: 229 IDMYAR-------------------------------FGCVMYAGFVFSQMAVKNVVSWS 257
           I MYA+                                G V  A   F  M+ KNV++W+
Sbjct: 433 ISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWN 492

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AM+  Y ++G   + L +++ M+ E + + P+ VT V++ + CA L A + G  I G  +
Sbjct: 493 AMLGAYIQHGAEEDGLRMYKVMLSEEY-VRPDWVTYVTLFKGCADLGANKLGDQIIGRTV 551

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + GL     V +A++TMY++CG++   + VFD ++ +D+VSWN++I+ Y  HG G +AI+
Sbjct: 552 KVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIE 611

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           IF +++  G  P  IS+V+VL  CSH+GLV+EGK  F+ M++ H I P +EH++CMVDLL
Sbjct: 612 IFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLL 671

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA  L EA  +I+D+ ++P  +VWG+LL +C+IH N ELAE A+K +FEL+  ++G+Y+
Sbjct: 672 GRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYM 731

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           L+A +YA A   D+  ++++L+  +G++K PG S +EV  K++ F + D  HPQ   +  
Sbjct: 732 LMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRK 791

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  L  ++   GYV             +  R  + HSEKLAVAFGL+       I I K
Sbjct: 792 KLDELMEKIARLGYVRT-----------DSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMK 840

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH+  K IS    +E ++RD  RFHHF  G CSCGDYW
Sbjct: 841 NLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 161/303 (53%), Gaps = 12/303 (3%)

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           VD A  +FD    R +  WN +  AL+ +GR  E L++   M   G  +R D  TYT  L
Sbjct: 240 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG--VRLDSTTYTSSL 297

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
            AC       S L+ GK++HA V+R+  +   ++ + L+++YA+ GC   A  VF+ +  
Sbjct: 298 TACAR----LSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHD 353

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           +N V+W+ +I+ + + G   E++ELF +M  E   L  +   + +++  C +   L  G+
Sbjct: 354 RNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTL--DQFALATLISGCCSRMDLCLGR 411

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +H   L+ G    + V ++L++MYA+C  L+  + +F  M+++D+VSW S+I++Y   G
Sbjct: 412 QLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVG 471

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
              KA + F  M    V    I++ ++LGA    G  E+G  +++ M  E  +RP    Y
Sbjct: 472 NVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY 527

Query: 431 ACM 433
             +
Sbjct: 528 VTL 530



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 170/380 (44%), Gaps = 46/380 (12%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           ++N Y+    + DA  +F +   R +  WN L      + +    LE +  M+ +G    
Sbjct: 97  MLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSG---- 152

Query: 181 SDRFTYTYVLKACVASSCGFSLLKH--GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
            D +   + L AC   SCG +L  H    ++ A V +        +   L+DM+ R G V
Sbjct: 153 -DSWPNAFTL-ACAMKSCG-ALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 209

Query: 239 --------------------MYAGFV-----------FSQMAVKNVVSWSAMIACYARNG 267
                               M AG+V           F  M  ++VVSW+ M++  +++G
Sbjct: 210 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 269

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP- 326
              EAL++  +  M+S  +  +S T  S L ACA L++L  GK +H  ++R  L  I P 
Sbjct: 270 RVREALDMVVD--MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN-LPHIDPY 326

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           V SALV +YA+ G  +  + VF+ +  R+ V+W  LIS +  +G   +++++F +M    
Sbjct: 327 VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAEL 386

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           ++    +  +++  C     +  G+ L     K   I+  V   + ++ +  + + L+ A
Sbjct: 387 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNS-LISMYAKCDNLQSA 445

Query: 447 AKIIEDLRIEPGPKVWGSLL 466
             I   +  E     W S++
Sbjct: 446 EAIFRFMN-EKDIVSWTSMI 464



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 125/311 (40%), Gaps = 73/311 (23%)

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG-FVFSQMAVKNVVSWSAMIACYARNGM 268
           H  ++  G    V +  TL+  Y   G +  A   +   +A  NV++ + M+  YA+ G 
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 269 AFEALELFREM------------------------------IMESHDLCPNSVTMVSVLQ 298
             +A+ELF  M                              +  S D  PN+ T+   ++
Sbjct: 107 LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 166

Query: 299 ACAALA----ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ--------- 345
           +C AL     AL+   M+  +  +   DS   V +ALV M+ RCG ++L           
Sbjct: 167 SCGALGWHSLALQLLAMVQKFDSQD--DS--EVAAALVDMFVRCGAVDLASRLFVRIKEP 222

Query: 346 ---C-------------------VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
              C                   +FD M +RDVVSWN ++S+    G   +A+ +  +M 
Sbjct: 223 TMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQ 282

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHMIRPSVEHYACMVDLLGRANK 442
             GV     ++ S L AC+    +  GK L  + +R    I P V   + +V+L  ++  
Sbjct: 283 SKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA--SALVELYAKSGC 340

Query: 443 LEEAAKIIEDL 453
            +EA  +   L
Sbjct: 341 FKEAKGVFNSL 351


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/622 (36%), Positives = 336/622 (54%), Gaps = 41/622 (6%)

Query: 72  LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV 131
           + +EPNP   T    + +C     L     V + +T+ G   +  +V  L+++Y     +
Sbjct: 217 VGVEPNPV--TMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDM 274

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
              R +FD+   + + ++N +       G   EVL +   M     G R D+ T    + 
Sbjct: 275 YAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEM--LQKGQRPDKVTMLSTIA 332

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           AC         L  GK  HA V R+G   + +I   +IDMY + G    A  VF  M+ K
Sbjct: 333 ACAQ----LGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNK 388

Query: 252 NVVSWSAMIACYARNG-------------------------------MAFEALELFREMI 280
            VV+W+++IA   R+G                               M  EA++L REM 
Sbjct: 389 TVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREM- 447

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
            ++  +  + VTMV +  AC  L AL+  K I+ YI +  +   + + +ALV M++RCG 
Sbjct: 448 -QNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGD 506

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
                 VF++M+KRDV +W + I    V G    AI++F EM+   V      FV++L A
Sbjct: 507 PLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTA 566

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
            SH G V++G+ LF +M K H + P + HY CMVDLLGRA  LEEA  +++ + I+P   
Sbjct: 567 FSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDV 626

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
           +WGS L +CR H NVE A  A +++ +L P   G +VLL+++YA+A  W++V RV+  ++
Sbjct: 627 IWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMK 686

Query: 521 ARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY 580
            +G QKV G S IEV   +  F S DE H +  Q+  +L  ++  + + GYVP T  VL 
Sbjct: 687 EKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLV 746

Query: 581 DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEI 640
           D+D +EKE ++  HSEKLA+A+GLINT KG  IR+ KNLR+C DCHSF K +SK   +EI
Sbjct: 747 DVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREI 806

Query: 641 LVRDVNRFHHFRNGVCSCGDYW 662
            VRD NR+H F+ G CSC D+W
Sbjct: 807 TVRDNNRYHFFKEGFCSCRDFW 828



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 219/456 (48%), Gaps = 26/456 (5%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P  TQ      L +C    +L +   +H ++   G      L+   + + +H +S++ A 
Sbjct: 18  PTTTQKPKNSSLQTC---KTLIELKQLHCNMLKKGVFNINKLIAACVQMGTH-ESLNYAL 73

Query: 136 HVF--DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           + F  D+  + ++Y  N L R    +G  +E + +Y  M     GI  D FT+ ++L AC
Sbjct: 74  NAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIV-MGIVPDNFTFPFLLSAC 132

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
            +    FS    G ++H  V++ G    + +  +LI  YA  G V     VF +M  +NV
Sbjct: 133 -SKIMAFS---EGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNV 188

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW+++I  Y+   MA EA+ LF EM+    +  PN VTMV  + ACA L  LE GK + 
Sbjct: 189 VSWTSLINGYSVVNMAKEAVCLFFEMVEVGVE--PNPVTMVCAISACAKLKDLELGKKVC 246

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             +   G+ S   VV+AL+ MY +CG +   + +FD    +++V +N+++S+Y  HG  G
Sbjct: 247 NLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAG 306

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY--- 430
           + + +  EM+  G  P  ++ +S + AC+  G +  GK         ++ R  +E     
Sbjct: 307 EVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGK-----SSHAYVFRNGLERLDNI 361

Query: 431 -ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
              ++D+  +  K E A K+ + +        W SL+        +ELA R      E+ 
Sbjct: 362 SNAIIDMYMKCGKREAACKVFDSMS-NKTVVTWNSLIAGLVRDGELELALRI---FGEMP 417

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
            +N  ++  +      A M++E   + R ++ +G++
Sbjct: 418 ESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIK 453


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/616 (35%), Positives = 357/616 (57%), Gaps = 15/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I S   +G  ++A+++    L     P  +T+  +  + +      +    H     
Sbjct: 70  NSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVV 129

Query: 109 NGFD-QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            GF+  D F+ T ++++Y+ F  + DAR VFD+   + + ++ AL       G   E LE
Sbjct: 130 LGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALE 189

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           ++  M   G+ I+ + +T   VL +C         L +GK IH  V++ G   +V   T+
Sbjct: 190 VFEDM--VGSRIKPNEYTLASVLVSC----GNLGDLVNGKLIHGLVVKSGLESVVASQTS 243

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+ MY++   V  +  VF+ +A  + V+W++ I    +NG    AL +FREMI  S  + 
Sbjct: 244 LLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCS--IS 301

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           PN  T  S+L AC++LA LE G+ IH   ++ G+D    V +AL+ +Y +CG +E  + V
Sbjct: 302 PNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSV 361

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F+ + + DVVS N++I +Y  +G+G +A+++F+ M   G  P+ ++F+S+L AC++AGLV
Sbjct: 362 FESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLV 421

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           EEG  +F  +R  H I  + +HY CM+DLLGRA + EEAA +IE+ +  P    W +LL 
Sbjct: 422 EEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGK-NPDVIQWRTLLN 480

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           +C+IH  VE+AE+  K++ +  P + G ++LL ++YA+A  WD V  +K       L+K 
Sbjct: 481 ACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKT 540

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           P  S +++ R++++F++ D  HP+  ++  +L  L  ++   GY P TK VL DL+ E+K
Sbjct: 541 PAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQDLEEEKK 600

Query: 588 ERIVLGHSEKLAVAFGLINT-SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
              +  HSEKLA+AF L  T  K   IRI KNLR+C DCHS+ KF+S    ++I+ RD  
Sbjct: 601 ISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDAK 660

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF+ G+CSC DYW
Sbjct: 661 RFHHFKGGICSCKDYW 676



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 201/376 (53%), Gaps = 19/376 (5%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  L+   T+  SL+   ++H+H+  +G     F   KLI+ Y     + +AR +FD+  
Sbjct: 4   YTSLIAQFTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMP 62

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
            R I  WN++  +    G+ +E +ELY  M     G+  D +T++ + KA   S  G S 
Sbjct: 63  NRHIVTWNSMISSHVSRGKTKEAIELYDNM--LFEGVLPDAYTFSAIFKAF--SEMGVS- 117

Query: 203 LKHGKEIHASVLRHGY---NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
            + G++ H   +  G+   +G V   T ++DMYA+FG +  A FVF ++  K+VV ++A+
Sbjct: 118 -REGQKAHGLAVVLGFEVSDGFV--ATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTAL 174

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I  Y + G+  EALE+F +M+     + PN  T+ SVL +C  L  L  GK+IHG +++ 
Sbjct: 175 IVGYNQRGLDGEALEVFEDMV--GSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKS 232

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           GL+S++   ++L+TMY++C  +E    VF+ +     V+W S I     +G    A+ +F
Sbjct: 233 GLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMF 292

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY--ACMVDLL 437
           +EMI   +SP+  +F S+L ACS   ++E G+ +     K   +      Y  A ++ L 
Sbjct: 293 REMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVK---LGVDGNKYVDAALIHLY 349

Query: 438 GRANKLEEAAKIIEDL 453
           G+   +E+A  + E L
Sbjct: 350 GKCGNVEKARSVFESL 365


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/645 (34%), Positives = 355/645 (55%), Gaps = 53/645 (8%)

Query: 53  NELIQSLCKQGNLRQALD-VLSIEPNPTQ---HTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++ +L + G +R+ALD V+ ++    +    TY   L +C   +SL     +H+ +  
Sbjct: 239 NMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIR 298

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           N    DP++ + L+ +Y+      +A+ VF+    R    W  L       G   E +EL
Sbjct: 299 NLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVEL 358

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M      +  D+F    ++  C    C    L  G+++H+  L+ G    V +  +L
Sbjct: 359 FNQMRAELMTL--DQFALATLISGC----CSRMDLCLGRQLHSLCLKSGQIQAVVVSNSL 412

Query: 229 IDMYAR-------------------------------FGCVMYAGFVFSQMAVKNVVSWS 257
           I MYA+                                G V  A   F  M+ KNV++W+
Sbjct: 413 ISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWN 472

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AM+  Y ++G   + L +++ M+ E + + P+ VT V++ + CA L A + G  I G  +
Sbjct: 473 AMLGAYIQHGAEEDGLRMYKVMLSEEY-VRPDWVTYVTLFKGCADLGANKLGDQIIGRTV 531

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + GL     V +A++TMY++CG++   + VFD ++ +D+VSWN++I+ Y  HG G +AI+
Sbjct: 532 KVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIE 591

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           IF +++  G  P  IS+V+VL  CSH+GLV+EGK  F+ M++ H I P +EH++CMVDLL
Sbjct: 592 IFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLL 651

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA  L EA  +I+D+ ++P  +VWG+LL +C+IH N ELAE A+K +FEL+  ++G+Y+
Sbjct: 652 GRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYM 711

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           L+A +YA A   D+  ++++L+  +G++K PG S +EV  K++ F + D  HPQ   +  
Sbjct: 712 LMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRK 771

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  L  ++   GYV             +  R  + HSEKLAVAFGL+       I I K
Sbjct: 772 KLDELMEKIARLGYVRT-----------DSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMK 820

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH+  K IS    +E ++RD  RFHHF  G CSCGDYW
Sbjct: 821 NLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 161/303 (53%), Gaps = 12/303 (3%)

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           VD A  +FD    R +  WN +  AL+ +GR  E L++   M   G  +R D  TYT  L
Sbjct: 220 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG--VRLDSTTYTSSL 277

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
            AC       S L+ GK++HA V+R+  +   ++ + L+++YA+ GC   A  VF+ +  
Sbjct: 278 TACAR----LSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHD 333

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           +N V+W+ +I+ + + G   E++ELF +M  E   L  +   + +++  C +   L  G+
Sbjct: 334 RNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTL--DQFALATLISGCCSRMDLCLGR 391

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +H   L+ G    + V ++L++MYA+C  L+  + +F  M+++D+VSW S+I++Y   G
Sbjct: 392 QLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVG 451

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
              KA + F  M    V    I++ ++LGA    G  E+G  +++ M  E  +RP    Y
Sbjct: 452 NVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY 507

Query: 431 ACM 433
             +
Sbjct: 508 VTL 510



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 170/380 (44%), Gaps = 46/380 (12%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           ++N Y+    + DA  +F +   R +  WN L      + +    LE +  M+ +G    
Sbjct: 77  MLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSG---- 132

Query: 181 SDRFTYTYVLKACVASSCGFSLLKH--GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
            D +   + L AC   SCG +L  H    ++ A V +        +   L+DM+ R G V
Sbjct: 133 -DSWPNAFTL-ACAMKSCG-ALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 189

Query: 239 --------------------MYAGFV-----------FSQMAVKNVVSWSAMIACYARNG 267
                               M AG+V           F  M  ++VVSW+ M++  +++G
Sbjct: 190 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP- 326
              EAL++  +  M+S  +  +S T  S L ACA L++L  GK +H  ++R  L  I P 
Sbjct: 250 RVREALDMVVD--MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN-LPHIDPY 306

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           V SALV +YA+ G  +  + VF+ +  R+ V+W  LIS +  +G   +++++F +M    
Sbjct: 307 VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAEL 366

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           ++    +  +++  C     +  G+ L     K   I+  V   + ++ +  + + L+ A
Sbjct: 367 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNS-LISMYAKCDNLQSA 425

Query: 447 AKIIEDLRIEPGPKVWGSLL 466
             I   +  E     W S++
Sbjct: 426 EAIFRFMN-EKDIVSWTSMI 444



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 125/311 (40%), Gaps = 73/311 (23%)

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG-FVFSQMAVKNVVSWSAMIACYARNGM 268
           H  ++  G    V +  TL+  Y   G +  A   +   +A  NV++ + M+  YA+ G 
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 269 AFEALELFREM------------------------------IMESHDLCPNSVTMVSVLQ 298
             +A+ELF  M                              +  S D  PN+ T+   ++
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 146

Query: 299 ACAALA----ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ--------- 345
           +C AL     AL+   M+  +  +   DS   V +ALV M+ RCG ++L           
Sbjct: 147 SCGALGWHSLALQLLAMVQKFDSQD--DS--EVAAALVDMFVRCGAVDLASRLFVRIKEP 202

Query: 346 ---C-------------------VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
              C                   +FD M +RDVVSWN ++S+    G   +A+ +  +M 
Sbjct: 203 TMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQ 262

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHMIRPSVEHYACMVDLLGRANK 442
             GV     ++ S L AC+    +  GK L  + +R    I P V   + +V+L  ++  
Sbjct: 263 SKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA--SALVELYAKSGC 320

Query: 443 LEEAAKIIEDL 453
            +EA  +   L
Sbjct: 321 FKEAKGVFNSL 331


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/585 (35%), Positives = 336/585 (57%), Gaps = 9/585 (1%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           TQ     +L +CT   ++     VH  +   GF  + F+ + L ++YS    + DA   F
Sbjct: 175 TQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAF 234

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           ++   +   +W ++       G  ++ L  Y +M      +  D F   +VL + +++  
Sbjct: 235 EEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKM------VTDDVFIDQHVLCSTLSACS 288

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS-QMAVKNVVSWS 257
                  GK +HA++L+ G+     I   L DMY++ G ++ A  VF       ++VS +
Sbjct: 289 ALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLT 348

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           A+I  Y       +AL  F ++      + PN  T  S+++ACA  A LE G  +HG ++
Sbjct: 349 AIIDGYVEMDQIEKALSTFVDL--RRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVV 406

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           +        V S LV MY +CG  +    +FD ++  D ++WN+L+  +  HG G  AI+
Sbjct: 407 KFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIE 466

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
            F  MI+ G+ P+ ++FV++L  CSHAG+VE+G   F SM K + + P  EHY+C++DLL
Sbjct: 467 TFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLL 526

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA KL+EA   I ++  EP    W S LG+C+IH ++E A+ A+ +L +LEP N+G +V
Sbjct: 527 GRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHV 586

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++YA    W++V+ ++++++   + K+PG S ++++ K + F   D  HPQ ++++ 
Sbjct: 587 LLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYE 646

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L NL  ++K  GYVPQT+ VL D+D   KE+++  HSE++AVAF L+    G  I + K
Sbjct: 647 KLDNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKK 706

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCHS  KFISK   + I+VRD++RFHHF NG CSCGDYW
Sbjct: 707 NLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 182/374 (48%), Gaps = 13/374 (3%)

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRA 155
           L+    +H+ L   G   + FL    +N+YS    +D    +FDK  +R +  W ++   
Sbjct: 91  LNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITG 150

Query: 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
                R +E L  + +M   G    + +F  + VL+AC +       ++ G ++H  V++
Sbjct: 151 FAHNSRFQEALSSFCQMRIEGE--IATQFALSSVLQACTS----LGAIQFGTQVHCLVVK 204

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
            G+   + + + L DMY++ G +  A   F +M  K+ V W++MI  + +NG   +AL  
Sbjct: 205 CGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTA 264

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           + +M+ +  D+  +   + S L AC+AL A   GK +H  IL+ G +    + +AL  MY
Sbjct: 265 YMKMVTD--DVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMY 322

Query: 336 ARCGKLELGQCVFD-HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           ++ G +     VF  H D   +VS  ++I  Y       KA+  F ++   G+ P+  +F
Sbjct: 323 SKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTF 382

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIR-PSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            S++ AC++   +E G  L   + K +  R P V   + +VD+ G+    + + ++ +++
Sbjct: 383 TSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVS--STLVDMYGKCGLFDHSIQLFDEI 440

Query: 454 RIEPGPKVWGSLLG 467
              P    W +L+G
Sbjct: 441 E-NPDEIAWNTLVG 453



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 171/387 (44%), Gaps = 48/387 (12%)

Query: 163 EEVLELYRRMNGTGTGIR-SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
           EE++      N  G+G + SD  T  ++++    +      L  GK++HA ++R G    
Sbjct: 54  EEIISFSFLKNLFGSGHKLSDTKTVAHLIQTYARTK----ELNKGKQLHAMLIRGGCLPN 109

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
             +    +++Y++ G + Y   +F +M+ +N+VSW+++I  +A N    EAL  F +M +
Sbjct: 110 TFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRI 169

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           E          + SVLQAC +L A++ G  +H  +++ G    L V S L  MY++CG+L
Sbjct: 170 EGE--IATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGEL 227

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
                 F+ M  +D V W S+I  +  +G   KA+  + +M+   V        S L AC
Sbjct: 228 SDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSAC 287

Query: 402 SHAGLVEEGKMLFESMRK-----EHMIRPSVE------------------HYAC------ 432
           S       GK L  ++ K     E  I  ++                   H  C      
Sbjct: 288 SALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSL 347

Query: 433 --MVDLLGRANKLEEAAKIIEDLR---IEPGPKVWGSLLGSCRIHCNVE----LAERASK 483
             ++D     +++E+A     DLR   IEP    + SL+ +C     +E    L  +  K
Sbjct: 348 TAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVK 407

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWD 510
             F+ +P  +     L D+Y    ++D
Sbjct: 408 FNFKRDPFVSST---LVDMYGKCGLFD 431



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 15/200 (7%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           IEPN  + T+  L+ +C +   L     +H  +    F +DPF+ + L+++Y      D 
Sbjct: 375 IEPN--EFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDH 432

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           +  +FD+        WN L    +  G G   +E +  M     G++ +  T+  +LK C
Sbjct: 433 SIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGM--IHRGLKPNAVTFVNLLKGC 490

Query: 194 VASSC---GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
             +     G +     ++I+  V +  +       + +ID+  R G +  A    + M  
Sbjct: 491 SHAGMVEDGLNYFSSMEKIYGVVPKEEH------YSCVIDLLGRAGKLKEAEDFINNMPF 544

Query: 251 K-NVVSWSAMI-ACYARNGM 268
           + NV  W + + AC     M
Sbjct: 545 EPNVFGWCSFLGACKIHGDM 564


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/631 (36%), Positives = 373/631 (59%), Gaps = 25/631 (3%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQA----LDVLSIEPNPTQHTYELLLLSCTHHNSLSDA 99
           P S+S    N LI +  ++G+ + A    L++     +    T   ++ +C  +  L   
Sbjct: 103 PDSVS---YNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQ 159

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD-KTRRRTIYVWNALFRALTL 158
           L+  S +T  G D    +   LI  YS    + +AR +F   +  R    WN++  A   
Sbjct: 160 LHALSVVT--GLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQ 217

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
              G + LELY  M  T  G+  D FT   VL A          L  G + HA +++ GY
Sbjct: 218 HREGSKALELYLEM--TVRGLIVDIFTLASVLTAFT----NVQDLLGGLQFHAKLIKSGY 271

Query: 219 NGIVHIMTTLIDMYARFG-CVMYAGFVFSQMAVKNVVSWSAMIACYA-RNGMAFEALELF 276
           +   H+ + LID+Y++ G C++    VF +++  ++V W+ MI+ Y+    ++ EALE F
Sbjct: 272 HQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECF 331

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS-ILPVVSALVTMY 335
           R++ +  H   P+  ++V V+ AC+ +++  QG+ +HG  L+  + S  + V +AL+ MY
Sbjct: 332 RQLQVVGHR--PDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMY 389

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ++CG L   + +FD M + + VS+NS+I+ Y  HG G +++ +F+ M+  G +P+ I+F+
Sbjct: 390 SKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFI 449

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
           SVL AC+H G VE+GK+ F  M+++  I P   H++CM+DLLGRA KL EA ++IE +  
Sbjct: 450 SVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPF 509

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
           +PG   W +LLG+CRIH NVELA +A+ RL +L+P NA  YV+LA++Y+      +   V
Sbjct: 510 DPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASV 569

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT 575
           ++L+  RG++K PG S IEV R+++ FV+ D FHP  +++   L  +  ++K+ GY P+ 
Sbjct: 570 RKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEV 629

Query: 576 KVVLYDLDA---EEKERIVLG-HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKF 631
           +  L   D    + +E + LG HSEKLAV+FGL++T +GE I + KNLR+C DCH+  K+
Sbjct: 630 RSALVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKY 689

Query: 632 ISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IS+   +EI VRD +RFH F++G CSCG YW
Sbjct: 690 ISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 157/365 (43%), Gaps = 40/365 (10%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           H +   L +C  H  L    ++H+    +      +L    + +YS    +  AR VFD 
Sbjct: 9   HNFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDH 68

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLEL------------------YRRMNGTGTGIR-- 180
           T    ++ +N L  A       E   +L                  Y R   T    +  
Sbjct: 69  THDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLF 128

Query: 181 ---------SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
                     D FT + ++ AC        L+   +++HA  +  G +  V +   LI  
Sbjct: 129 LEMREAFLDMDGFTLSGIITAC---GINVGLI---RQLHALSVVTGLDSYVSVGNALITS 182

Query: 232 YARFGCVMYAGFVFSQMAV-KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           Y++ G +  A  +F  ++  ++ VSW++M+  Y ++    +ALEL+ EM +    L  + 
Sbjct: 183 YSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRG--LIVDI 240

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG-QCVFD 349
            T+ SVL A   +  L  G   H  +++ G      V S L+ +Y++CG   L  + VFD
Sbjct: 241 FTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFD 300

Query: 350 HMDKRDVVSWNSLISSYGVH-GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
            +   D+V WN++IS Y ++     +A++ F+++   G  P   S V V+ ACS+     
Sbjct: 301 EISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPS 360

Query: 409 EGKML 413
           +G+ +
Sbjct: 361 QGRQV 365



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           L+ C A   L  GK +H   ++  + +   + +  + +Y++C +L   + VFDH    +V
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNV 74

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
            S+N+LIS+Y    Y   A Q+F EM      P  +S+ +++ A +  G  +    LF  
Sbjct: 75  FSFNTLISAYAKESYVEVAHQLFDEM----PQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 417 MRK 419
           MR+
Sbjct: 131 MRE 133


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/671 (35%), Positives = 365/671 (54%), Gaps = 34/671 (5%)

Query: 4   LQSPQTPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQG 63
           L SP  P L  + Y  N  + L   P S    + L  +    S +S     L+  L + G
Sbjct: 36  LDSPPPPFL--ANYLINMYSKLD-HPESARLVLRLTPARNVVSWTS-----LVSGLAQNG 87

Query: 64  NLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
           +   AL    ++      P   T+  +  +            +H+     G   D F+  
Sbjct: 88  HFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGC 147

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY---RRMNGTG 176
              ++Y      DDAR +FD+   R +  WNA        GR +E +E +   RR+ G  
Sbjct: 148 SAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQP 207

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
             I     T+   L AC   S G  LL  G ++H  V R G++  V +   LID Y +  
Sbjct: 208 NSI-----TFCGFLNAC---SDGL-LLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCK 258

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF---REMIMESHDLCPNSVTM 293
            +  +  +F++M +KN VSW +++A Y +N    +A  L+   R+ I+E+ D       +
Sbjct: 259 QIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDF-----MI 313

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
            SVL ACA +A LE G+ IH + ++  ++  + V SALV MY +CG +E  +  FD M +
Sbjct: 314 SSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPE 373

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGLVEEGK 411
           +++V+ NSLI  Y   G    A+ +F++M   G  P+P  ++FVS+L ACS AG VE G 
Sbjct: 374 KNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGM 433

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
            +F+SM+  + I P  EHY+C+VD+LGRA  +E+A + I+ + I+P   VWG+L  +CR+
Sbjct: 434 KIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRM 493

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H    L   A++ LF+L+P ++GN+VLL++ +AAA  W E   V+  ++  G++K  G S
Sbjct: 494 HGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYS 553

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            I VK ++++F + D  H   +++  +L  L  +M+  GY P  K+ LYDL+ EEK   V
Sbjct: 554 WITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEV 613

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
             HSEKLA+AFGL+       IRITKNLR+C DCHSF KF+S    +EI+VRD NRFH F
Sbjct: 614 SHHSEKLALAFGLVALPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRF 673

Query: 652 RNGVCSCGDYW 662
           ++G+CSC DYW
Sbjct: 674 KDGICSCKDYW 684



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 126/269 (46%), Gaps = 5/269 (1%)

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTT-LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
           S ++ G+ +HA +++   +     +   LI+MY++      A  V      +NVVSW+++
Sbjct: 20  SSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSL 79

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           ++  A+NG    AL  F EM  E   + PN  T   V +A A+L     GK IH   ++ 
Sbjct: 80  VSGLAQNGHFSTALFEFFEMRREG--VAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKC 137

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           G    + V  +   MY +    +  + +FD + +R++ +WN+ IS+    G   +AI+ F
Sbjct: 138 GRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAF 197

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
            E    G  P+ I+F   L ACS   L++ G M    +         V  Y  ++D  G+
Sbjct: 198 IEFRRIGGQPNSITFCGFLNACSDGLLLDLG-MQMHGLVFRSGFDTDVSVYNGLIDFYGK 256

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
             ++  +  I  ++ ++     W SL+ +
Sbjct: 257 CKQIRSSEIIFAEMGMKNAVS-WCSLVAA 284


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/635 (37%), Positives = 347/635 (54%), Gaps = 74/635 (11%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
           NS      +H  L          +VT+ I+  S  +SVD A  +F +   +  Y++NAL 
Sbjct: 53  NSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALI 112

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           R L    R E  +  +  M      I  DR T+ +VLK+  A S G      G+ +H  +
Sbjct: 113 RGLAENSRFESSISFFVLM--LKWKISPDRLTFPFVLKSAAALSNG----GVGRALHCGI 166

Query: 214 LRHGY-----------------------------------NGIVHIMTTLIDMYARFGCV 238
           L+ G                                    NG V I   LI  Y R G +
Sbjct: 167 LKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDL 226

Query: 239 MYA--------------------GF-----------VFSQMAVKNVVSWSAMIACYARNG 267
           + A                    GF           +F +M  KNVVSW+ M+  +++NG
Sbjct: 227 VKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNG 286

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
              +ALE F  M+ E     PN  T+VS L ACA + AL+ G  IH Y+   G    L +
Sbjct: 287 DPEKALETFFCMLEEGAR--PNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVI 344

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
            +ALV MYA+CG +E  + VF    ++ ++ W+ +I  + +HG+  KA+Q F+ M + G 
Sbjct: 345 GTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGT 404

Query: 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
            P  + F++VL ACSH+G V EG   F++MR+ ++I PS++HY  +VD+LGRA +L+EA 
Sbjct: 405 KPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEAL 464

Query: 448 KIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507
           K I  + I P   VWG+L  +CR H NVE+AE ASK+L +LEP + G+YV L++ YA+  
Sbjct: 465 KFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVG 524

Query: 508 MWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK 567
            WD+ +RV+  +   G  K PG S IEV  K++ FV+ D  H +  ++++ L  +SA  +
Sbjct: 525 RWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAR 584

Query: 568 EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHS 627
           EKGY  + + VL++++ EEKE  +  HSEKLA+AFG+++T  G T+RI KNLR+C DCHS
Sbjct: 585 EKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHS 644

Query: 628 FTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           F K+ SK + +EI++RD+ RFHHF +GVCSCGDYW
Sbjct: 645 FMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 150/371 (40%), Gaps = 21/371 (5%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           L+    K   L  AL V    P   ++   L+     H       L   + L D+   +D
Sbjct: 181 LVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKD 240

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
                 LIN +     +  A+ +F K   + +  W  +    +  G  E+ LE +  M  
Sbjct: 241 TGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCM-- 298

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
              G R + +T    L AC         L  G  IH  +  +G+   + I T L+DMYA+
Sbjct: 299 LEEGARPNDYTIVSALSACAK----IGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAK 354

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G + +A  VF +   K ++ WS MI  +A +G   +AL+ F  M        P+SV  +
Sbjct: 355 CGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTK--PDSVVFL 412

Query: 295 SVLQACAALAALEQG-----KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
           +VL AC+    + +G      M  GY++   +     VV     M  R G+L+       
Sbjct: 413 AVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVD----MLGRAGRLDEALKFIR 468

Query: 350 HMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLV 407
            M    D V W +L  +   H     A    K+++   + P  P S+V +  A +  G  
Sbjct: 469 AMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQ--LEPKHPGSYVFLSNAYASVGRW 526

Query: 408 EEGKMLFESMR 418
           ++ + +  SMR
Sbjct: 527 DDAERVRVSMR 537


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/645 (34%), Positives = 361/645 (55%), Gaps = 45/645 (6%)

Query: 51  NKNELIQSLCKQGNLRQAL--DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
            K+E ++ LC  G LR AL      +  +     +  L  +C    +L     +H+    
Sbjct: 14  TKDEFVR-LCATGRLRDALRRPFRGVLWSDAARLFSHLFRAC---RALRPLRQLHAFAAT 69

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF--------------- 153
           +G   D F    L+  Y+    +  AR +F++  RR +  WN LF               
Sbjct: 70  SGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKL 129

Query: 154 ----------------RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
                             LT  G  EE L  +  M   G  +  D F    V + C    
Sbjct: 130 FDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREG--MHPDEFGLGSVFRCCA--- 184

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G   +  G+++HA V+R G +  + + ++L  MY R GC+     V   +   ++VS +
Sbjct: 185 -GLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCN 243

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            +IA   +NG +  ALE F   +M S  +  + VT VS + +C+ LAAL QG+ IHG ++
Sbjct: 244 TIIAGRTQNGDSEGALEYF--CMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVM 301

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G+D ++PV++ LV MY+RCG L   + VF      D    +++IS+YG HG+G KAI+
Sbjct: 302 KAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIE 361

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +FK+M+  G  PS ++F+++L ACSH+GL EEG   FE M K + ++PSV+HY C+VDLL
Sbjct: 362 LFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLL 421

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GR+  L+EA  +I  + + P   +W +LL +C+   N ++AER +KR+ EL+P ++ +YV
Sbjct: 422 GRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYV 481

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++ A +  W +V  V++ +    ++K PG S +E+K  ++ F + DE HP+ +++  
Sbjct: 482 LLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDE 541

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  + A++++ GY P   +VL+D++ EEKE  +  HSEKLA+AF  ++  +G  IR+ K
Sbjct: 542 CLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMK 601

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C+DCH   K +S+   +EI+VRDV+RFHHF++G CSC DYW
Sbjct: 602 NLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 106/248 (42%), Gaps = 15/248 (6%)

Query: 46  SLSSRNKNELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALN 101
           SLS  + N +I    + G+   AL+      S+       T+   + SC+   +L+    
Sbjct: 236 SLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQ 295

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +H  +   G D+   ++T L+++YS    + D+  VF        ++ +A+  A    G 
Sbjct: 296 IHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGH 355

Query: 162 GEEVLELYRR-MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYN 219
           G++ +EL+++ MNG   G      T+  +L AC  S     L + G +    + + +G  
Sbjct: 356 GQKAIELFKQMMNG---GAEPSDVTFLALLYACSHS----GLKEEGMDCFELMTKTYGMQ 408

Query: 220 GIVHIMTTLIDMYARFGCVMYA-GFVFSQMAVKNVVSWSAMI-ACYARNGMAFEALELFR 277
             V   T ++D+  R GC+  A   + S     + V W  ++ AC  +           R
Sbjct: 409 PSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKR 468

Query: 278 EMIMESHD 285
            + ++ HD
Sbjct: 469 VIELDPHD 476


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/612 (35%), Positives = 349/612 (57%), Gaps = 18/612 (2%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           +Q  C    +   L +L     P  +T   ++ +C    S      +HS +   G   D 
Sbjct: 225 VQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDT 284

Query: 116 FLVTKLINVYSHFD---SVDDARHVFDKTRRRTIYVWNALFRA-LTLAGRGEEVLELYRR 171
            +   L+++Y+      S++ AR VF +     +  W AL    +   G+    +EL   
Sbjct: 285 CVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCE 344

Query: 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
           M      I  +  TY+ +LKAC       S    G++IHA V++     +  +   L+ M
Sbjct: 345 M--LNESIEPNHLTYSSLLKACA----NLSDQDSGRQIHARVMKTSIGNVNVVGNALVSM 398

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           YA  GC+  A   F Q+  +N++S S+ I    R+  ++ +        +ES D+  ++ 
Sbjct: 399 YAESGCMEEARKAFDQLYERNLLSTSSDIGETGRSNASWSSQ-------IESMDVGVSTF 451

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T  S+L A A +    +G+ +H   ++ G +S   + ++LV+MY+RCG L+     FD M
Sbjct: 452 TFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEM 511

Query: 352 -DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
            D  +V+SW S+IS+   HG+  +A+ +F +MI  GV P+ +++++VL ACSH GLV+EG
Sbjct: 512 EDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEG 571

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           K  F SM+K+H + P +EHYACMVDLL R+  ++EA + I ++  +    VW +LLG+CR
Sbjct: 572 KEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACR 631

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
            + N+E+ E A++ + +LEP +   YVLL+++YA   +WDEV R++ L+  R L K  G 
Sbjct: 632 TYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGL 691

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S + V   ++ F + D  HP+ ++++A L  L  E+K+ GYVP T +VL+D+  + KE+ 
Sbjct: 692 SWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQC 751

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +L HSEK+AVAFGLI T   + IRI KNLR+C DCHS  K+ISK   +EI++RD NRFH 
Sbjct: 752 LLQHSEKIAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHR 811

Query: 651 FRNGVCSCGDYW 662
            ++G CSCG+YW
Sbjct: 812 MKDGKCSCGEYW 823



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 168/349 (48%), Gaps = 14/349 (4%)

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR-RTIYVWNALFRALTLAGRGEEVLELY 169
            D D  +   L+ +YS    V  AR VFD  R  R +  W A+   LT  G  +E L L 
Sbjct: 75  LDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLL 134

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI-VHIMTTL 228
             M    +G+R + FT      AC     G      G  +    ++ G+ G  V +   L
Sbjct: 135 GEM--LESGLRPNAFTLCAAAHACFP---GELFRSSGGTVLGFAIKTGFWGTDVSVGCAL 189

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDM+AR G ++ A  VF+ +  + VV W+ MI  Y + G A +A+ELF  M+ +  +  P
Sbjct: 190 IDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFE--P 247

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC---GKLELGQ 345
           +  TM S++ ACA   +   G+ +H  +LR GL S   V   LV MY +      +E  +
Sbjct: 248 DGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECAR 307

Query: 346 CVFDHMDKRDVVSWNSLISSY-GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
            VF  M   +V+SW +LIS Y    G    A+++  EM+   + P+ +++ S+L AC++ 
Sbjct: 308 KVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANL 367

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
              + G+ +   + K  +   +V   A +V +   +  +EEA K  + L
Sbjct: 368 SDQDSGRQIHARVMKTSIGNVNVVGNA-LVSMYAESGCMEEARKAFDQL 415



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 179/365 (49%), Gaps = 24/365 (6%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LI++++    +  AR VF+    RT+ VW  +       G   + +EL+  M     G  
Sbjct: 189 LIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGM--LEDGFE 246

Query: 181 SDRFTYTYVLKACV-ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF---G 236
            D +T + ++ AC    S G      G+++H+ VLR G      +   L+DMY +     
Sbjct: 247 PDGYTMSSMVSACAEQGSAGL-----GQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQ 301

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYAR-NGMAFEALELFREMIMESHDLCPNSVTMVS 295
            +  A  VF +M   NV+SW+A+I+ Y +  G    A+EL  EM+ ES +  PN +T  S
Sbjct: 302 SMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIE--PNHLTYSS 359

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           +L+ACA L+  + G+ IH  +++  + ++  V +ALV+MYA  G +E  +  FD + +R+
Sbjct: 360 LLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERN 419

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           ++S +S I      G  G++   +   I    V  S  +F S+L A +  GL  +G+ L 
Sbjct: 420 LLSTSSDI------GETGRSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLH 473

Query: 415 E-SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
             S++        + +   +V +  R   L++A +  +++  +     W S++ +   H 
Sbjct: 474 ALSIKTGFESDKGISN--SLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHG 531

Query: 474 NVELA 478
           + E A
Sbjct: 532 HAERA 536


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/693 (32%), Positives = 371/693 (53%), Gaps = 99/693 (14%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD-QDPFLVTKLIN 123
           LRQ++D+L      T   Y  L+L C   N ++ A  + SH+  + F   D FL  +L++
Sbjct: 7   LRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLH 66

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL--------------------------T 157
           +Y+ F  + DA+++FDK  +R  + WNAL  A                           T
Sbjct: 67  LYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTT 126

Query: 158 LAGRG-----EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA----------------- 195
           +AG       +E LEL++RM   G       +T   +L A                    
Sbjct: 127 IAGFSGNSCPQESLELFKRMQREG--FEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVR 184

Query: 196 ----------------SSCG--------FSLLKHGKEIHASVLRHGYN---------GIV 222
                           + CG        F  L     +  +++  GY          G++
Sbjct: 185 NFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLL 244

Query: 223 H------------IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAF 270
           H             M+T+I  Y + G V  A  VFS+   K++V W+AM+  YA+NG   
Sbjct: 245 HQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREE 304

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
           +AL LF EM++E  +  P+S T+ SV+ +CA LA+L  G+ +HG  +  GL++ L V SA
Sbjct: 305 DALLLFNEMLLEHIE--PDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSA 362

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           L+ MY++CG ++  + VF+ M  R+VVSWN++I     +G+   A+++F+ M+     P 
Sbjct: 363 LIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPD 422

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
            ++F+ +L AC H   +E+G+  F+S+  +H + P+++HYACMV+LLGR  ++E+A  +I
Sbjct: 423 NVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALI 482

Query: 451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWD 510
           +++  +P   +W +LL  C    ++  AE A++ LFEL+PT A  Y++L+++YA+   W 
Sbjct: 483 KNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWK 542

Query: 511 EVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKG 570
           +V  V+ L++++ ++K  G S IE+  +++ F S D  HP+ E ++  L  L  +++E+G
Sbjct: 543 DVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEG 602

Query: 571 YVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG-ETIRITKNLRLCEDCHSFT 629
           + P T +VL+D+  +EK + +  HSEKLA+AFGLI    G   IRI KN+R+C DCH F 
Sbjct: 603 FTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFM 662

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KF S+   ++I++RD NRFHHF  G CSC D W
Sbjct: 663 KFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 147/320 (45%), Gaps = 10/320 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N L     K G + QA  +          ++ L++     +      + +   +  +G  
Sbjct: 194 NALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHM 253

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            D   ++ +I  Y     VD+AR VF + + + I  W A+       GR E+ L L+  M
Sbjct: 254 PDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEM 313

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                 I  D +T + V+ +C       + L HG+ +H   +  G N  + + + LIDMY
Sbjct: 314 --LLEHIEPDSYTLSSVVSSCAK----LASLHHGQAVHGKSILAGLNNNLLVSSALIDMY 367

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           ++ G +  A  VF+ M  +NVVSW+AMI   A+NG   +ALELF  M+ +     P++VT
Sbjct: 368 SKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFK--PDNVT 425

Query: 293 MVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
            + +L AC     +EQG+     I  + G+   L   + +V +  R G++E    +  +M
Sbjct: 426 FIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNM 485

Query: 352 -DKRDVVSWNSLISSYGVHG 370
               D + W++L+S     G
Sbjct: 486 AHDPDFLIWSTLLSICSTKG 505


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/632 (35%), Positives = 348/632 (55%), Gaps = 55/632 (8%)

Query: 78   PTQHTYELLLLSCTHH-NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P Q T  ++L SC+ + N       +H  +  NG D D  L   +++ Y        A  
Sbjct: 385  PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEK 444

Query: 137  VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG---------------------- 174
            +F     +    WN +  +    G  ++ ++L+R++ G                      
Sbjct: 445  LFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVA 504

Query: 175  -------TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
                      G   ++ T++  L   +ASS   S+L  GK+IH  VL+ G      +  +
Sbjct: 505  LELLYKMVAAGPAFNKLTFSIAL--VLASS--LSVLGLGKQIHTQVLKVGVLDDGFVRNS 560

Query: 228  LIDMYARFGCVMYAGFVFSQM---------------AVKNVVSWSAMIACYARNGMAFEA 272
            LIDMY + G +  A  +F  +               AV   VSWS+M++ Y +NG   +A
Sbjct: 561  LIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDA 620

Query: 273  LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR--RGLDSILPVVSA 330
            L+ F  MI    ++  +  T+ SV+ ACA+   LE G+ +HGYI +   GLD  L   S+
Sbjct: 621  LKTFSFMICSQVEV--DKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLG--SS 676

Query: 331  LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
            ++ MY +CG L     +F+    R+VV W S+IS   +HG G +A+++F+ MI  G++P+
Sbjct: 677  IIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPN 736

Query: 391  PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
             +SFV VL ACSHAGL+EEG   F  MR+ + IRP  EH+ CMVDL GRA +L E  + I
Sbjct: 737  EVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFI 796

Query: 451  EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWD 510
             +  I     VW S L SCR+H N+E+     K+L ELEP +AG Y+L + + A    W+
Sbjct: 797  HNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWE 856

Query: 511  EVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKG 570
            E  +++ L++ RG++K P +S I++K +++SFV  D  HPQ  ++++ L  L   +KE G
Sbjct: 857  EAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIG 916

Query: 571  YVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTK 630
            Y      V+ D++ E+++ ++  HSEKLA+A+G+I+T+ G  IR+ KNLR+C DCH+F K
Sbjct: 917  YSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIK 976

Query: 631  FISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            + S+   +EI++RD++RFHHF++G CSC DYW
Sbjct: 977  YASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 203/449 (45%), Gaps = 71/449 (15%)

Query: 94  NSLSDALN------VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIY 147
           ++ SD++N      +H+ L  NG          L+N+Y+   +++ A  +F++  +  ++
Sbjct: 296 STFSDSMNYPNSEVLHAKLIKNGCV--GIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVF 353

Query: 148 VWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGK 207
            W  L       G   +VL L+ +M   G  +  ++FT + VLK+C   S   +  + GK
Sbjct: 354 SWTVLISGFARIGLSADVLGLFTKMQDQG--VCPNQFTLSIVLKSC---SSNVNDSRIGK 408

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY---- 263
            IH  +LR+G +    +  +++D Y +  C  YA  +F  MA K+ VSW+ M++ Y    
Sbjct: 409 GIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIG 468

Query: 264 ---------------------------ARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
                                       RNG    ALEL  +M+        N +T    
Sbjct: 469 DMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAF--NKLTFSIA 526

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR-- 354
           L   ++L+ L  GK IH  +L+ G+     V ++L+ MY +CG++E    +F H+ +   
Sbjct: 527 LVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESS 586

Query: 355 -------------DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
                        + VSW+S++S Y  +G    A++ F  MI   V     +  SV+ AC
Sbjct: 587 MMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSAC 646

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHY--ACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           + AG++E G+ +   ++K   I   ++ +  + ++D+  +   L +A  I    + +   
Sbjct: 647 ASAGVLELGRQVHGYIQK---IGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAK-DRNV 702

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFEL 488
            +W S++  C +H       R + RLFEL
Sbjct: 703 VLWTSMISGCALHGQ----GREAVRLFEL 727



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 24  HLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSI----EPNPT 79
           HLP + S     ++   S     + S + + ++    + G    AL   S     +    
Sbjct: 580 HLPQESS----MMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVD 635

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
           + T   ++ +C     L     VH ++   G   D FL + +I++Y    S++DA  +F+
Sbjct: 636 KFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFN 695

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           + + R + +W ++     L G+G E + L+  M     GI  +  ++  VL AC  S  G
Sbjct: 696 QAKDRNVVLWTSMISGCALHGQGREAVRLFELM--INEGITPNEVSFVGVLTAC--SHAG 751

Query: 200 FSLLKHGKEIHASVLRHGYN---GIVHIMTTLIDMYARFG 236
             LL+ G + +  ++R  Y    G  H  T ++D+Y R G
Sbjct: 752 --LLEEGCK-YFRLMREVYGIRPGAEH-FTCMVDLYGRAG 787


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/614 (34%), Positives = 358/614 (58%), Gaps = 46/614 (7%)

Query: 84  ELLLLSCTHHNSLSDALNVHSHLTDNGF---DQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           E L +   + +S+ + L +H+ +  +      + P L  KL   Y+    +  +  +F +
Sbjct: 28  EKLAVFIDNSHSVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQ 87

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
           T    ++++ A     ++ G  ++   LY ++    + I  + FT++ +LK+C   S   
Sbjct: 88  TIDPDLFLFTAAINTASINGLKDQAFLLYVQL--LSSQINPNEFTFSSILKSCSTKS--- 142

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
                GK IH  VL+ G     ++ T L+D+YA+ G V+ A  VF +M  +++VS +AMI
Sbjct: 143 -----GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMI 197

Query: 261 ACYAR-------------------------------NGMAFEALELFREMIMESHDLCPN 289
            CYA+                               +G   +AL LF++++ +     P+
Sbjct: 198 TCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPK-PD 256

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
            +T+V+ L AC+ + ALE G+ IH ++    +   + V +AL+ MY++CG LE    VF+
Sbjct: 257 EITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFN 316

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSHAGLVE 408
              ++D+V+WN++I+ Y +HGY   A+++F EM    G+ P+ I+F+  L AC+HAGLV 
Sbjct: 317 DTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVN 376

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG  +FESM +E+ I+P +EHY C+V LLGRA +L+ A +II+++ +E    +W S+LGS
Sbjct: 377 EGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGS 436

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C++H    L +  ++ L     +N+G YVLL+++YA    ++ V +V+ L++ +G+ K P
Sbjct: 437 CKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEP 496

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S IE+  K++ F + D  H + ++++ +L  +S  +K  GYVP T  VL+DL+  EKE
Sbjct: 497 GISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKE 556

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           R +  HSE+LA+A+GLI+T  G  ++I KNLR+C DCH+ TK ISK   ++I++RD NRF
Sbjct: 557 RSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRF 616

Query: 649 HHFRNGVCSCGDYW 662
           HHF +G CSC D+W
Sbjct: 617 HHFSDGSCSCDDFW 630



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 164/357 (45%), Gaps = 43/357 (12%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH- 127
           + +LS + NP + T+  +L SC    S      +H+H+   G   DP++ T L+++Y+  
Sbjct: 117 VQLLSSQINPNEFTFSSILKSC----STKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKG 172

Query: 128 ---------FD---------------------SVDDARHVFDKTRRRTIYVWNALFRALT 157
                    FD                     +V+ AR +FD+   R I  WN +    +
Sbjct: 173 GDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYS 232

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
             G   + L L++++   G   + D  T    L AC  S  G   L+ G+ IH  V    
Sbjct: 233 QHGFPSDALMLFQKLLADGKP-KPDEITVVAALSAC--SQIG--ALETGRWIHVFVNSSR 287

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
               V + T LIDMY++ G +  A  VF+    K++V+W+AMI  YA +G + +AL LF 
Sbjct: 288 IRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFD 347

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYA 336
           EM      L P  +T +  LQACA    + +G  I   + +  G+   +     LV++  
Sbjct: 348 EM-QGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLG 406

Query: 337 RCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI 392
           R G+L+    +  +M+ + D V W+S++ S  +HG      +I + +I   +S S I
Sbjct: 407 RAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGI 463



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 117/284 (41%), Gaps = 43/284 (15%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           +P P + T    L +C+   +L     +H  +  +    +  + T LI++YS   S+++A
Sbjct: 252 KPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEA 311

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
             VF+ T R+ I  WNA+     + G  ++ L L+  M G  TG++    T+   L+AC 
Sbjct: 312 VLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGI-TGLQPTDITFIGTLQACA 370

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NV 253
                          HA ++  G           I ++   G          +  +K  +
Sbjct: 371 ---------------HAGLVNEG-----------IQIFESMG---------QEYGIKPKI 395

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
             +  +++   R G    A E+ + M ME+     +SV   SVL +C        GK I 
Sbjct: 396 EHYGCLVSLLGRAGQLKRAYEIIKNMNMEA-----DSVLWSSVLGSCKLHGEFMLGKEIA 450

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            Y++ + + S   +   L  +YA  G  E    V + M ++ +V
Sbjct: 451 EYLIGQNI-SNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIV 493


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/586 (37%), Positives = 333/586 (56%), Gaps = 9/586 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PTQ  +   + +C    S+     +H      G   + F+ + L ++YS   ++ DA  V
Sbjct: 39  PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKV 98

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++   +    W A+    +  G  EE L  +++M      I  D+      L AC A  
Sbjct: 99  FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTI--DQHVLCSTLGACGA-- 154

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS-QMAVKNVVSW 256
                 K G+ +H+SV++ G+   + +   L DMY++ G +  A  VF      +NVVS+
Sbjct: 155 --LKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSY 212

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + +I  Y       + L +F E+      + PN  T  S+++ACA  AALEQG  +H  +
Sbjct: 213 TCLIDGYVETEQIEKGLSVFVEL--RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 270

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++   D    V S LV MY +CG LE     FD +     ++WNSL+S +G HG G  AI
Sbjct: 271 MKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAI 330

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           +IF+ M+  GV P+ I+F+S+L  CSHAGLVEEG   F SM K + + P  EHY+C++DL
Sbjct: 331 KIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDL 390

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA +L+EA + I  +  EP    W S LG+CRIH + E+ + A+++L +LEP N+G  
Sbjct: 391 LGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGAL 450

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++YA    W++V+ V+  +    ++K+PG S ++V  K + F + D  HP+   ++
Sbjct: 451 VLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIY 510

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  L  ++K  GYVP+T  V  D+D   KE+++  HSE++AVAF LI+   G+ I + 
Sbjct: 511 EKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVK 570

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCHS  KFISK   ++I+VRD +RFHHF +G CSCGDYW
Sbjct: 571 KNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 133/302 (44%), Gaps = 43/302 (14%)

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M  +N+VSW+AMI+  ++N    EA+  F  M +      P      S ++ACA+L ++E
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGE--VPTQFAFSSAIRACASLGSIE 58

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            GK +H   L+ G+ S L V S L  MY++CG +     VF+ M  +D VSW ++I  Y 
Sbjct: 59  MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 118

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG--------KMLFES--- 416
             G   +A+  FK+MI   V+       S LGAC      + G        K+ FES   
Sbjct: 119 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 178

Query: 417 ---------MRKEHMIRPS-----------VEHYACMVDLLGRANKLEEAAKIIEDLR-- 454
                     +   M   S           V  Y C++D      ++E+   +  +LR  
Sbjct: 179 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 238

Query: 455 -IEPGPKVWGSLLGSCRIHCNVE----LAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
            IEP    + SL+ +C     +E    L  +  K  F+ +P  +    +L D+Y    + 
Sbjct: 239 GIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS---ILVDMYGKCGLL 295

Query: 510 DE 511
           ++
Sbjct: 296 EQ 297


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/587 (36%), Positives = 346/587 (58%), Gaps = 9/587 (1%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P   T   +L +C H   LS A  +++++   GF  +  +   LI+VY+    +  AR 
Sbjct: 304 KPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARD 363

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF+    +    WN++      +G   E ++L++ M       ++D  TY  +    ++ 
Sbjct: 364 VFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEE--QADHITYLML----ISV 417

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           S   + LK GK +H++ ++ G    + +   LIDMYA+ G V  +  +FS M   + V+W
Sbjct: 418 STRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTW 477

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + +I+   R G     L++  +M     ++ P+  T +  L  CA+LAA   GK IH  +
Sbjct: 478 NTVISACVRFGDFATGLQVTTQM--RKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCL 535

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           LR G +S L + +AL+ MY++CG LE    VF+ M +RDVV+W  +I +YG++G G KA+
Sbjct: 536 LRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKAL 595

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           + F +M   G+ P  + F++++ ACSH+GLV+EG   FE M+  + I P +EHYAC+VDL
Sbjct: 596 ETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDL 655

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           L R+ K+ +A + I+ + I+P   +W S+L +CR   ++E AER S+R+ EL P + G  
Sbjct: 656 LSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYS 715

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           +L ++ YAA   WD+V  +++ L+ + + K PG S IEV + ++ F S D+  PQ E ++
Sbjct: 716 ILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIY 775

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDL-DAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
             L  L + M ++GY+P  + V  +L + EEK R++ GHSE+LA+AFGL+NT  G  +++
Sbjct: 776 KSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQV 835

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C DCH  TK ISK   +EILVRD NRFH F++G CSC D W
Sbjct: 836 MKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 184/337 (54%), Gaps = 10/337 (2%)

Query: 91  THHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK-TRRRTIYVW 149
           +  ++L++   +H+ +   G D   F   KLI+ YSHF     +  VF + +  + +Y+W
Sbjct: 15  SSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLW 74

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
           N++ RA +  G   E LE Y ++  +   +  D++T+  V+KAC     G    + G  +
Sbjct: 75  NSIIRAFSKNGLFPEALEFYGKLRESK--VSPDKYTFPSVIKACA----GLFDAEMGDLV 128

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           +  +L  G+   + +   L+DMY+R G +  A  VF +M V+++VSW+++I+ Y+ +G  
Sbjct: 129 YEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EALE++ E+  ++  + P+S T+ SVL A   L  ++QG+ +HG+ L+ G++S++ V +
Sbjct: 189 EEALEIYHEL--KNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNN 246

Query: 330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
            LV MY +  +    + VFD MD RD VS+N++I  Y       +++++F E +     P
Sbjct: 247 GLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKP 305

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
             ++  SVL AC H   +   K ++  M K   +  S
Sbjct: 306 DLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLES 342


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/565 (37%), Positives = 325/565 (57%), Gaps = 48/565 (8%)

Query: 99  ALNVHSHLTDNGFDQ-DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALT 157
           A ++H+    +GF   D F+ T L+  Y+     D AR  FD+  RR +++ N +  A  
Sbjct: 58  AASLHARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYV 117

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
             G   EV E  R  +G       +R   ++                             
Sbjct: 118 TRG---EVAEARRVFDGM-----RERDMVSW----------------------------- 140

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
                    T+I  YA  G V  A  VF+ M  ++  SWS+M++ Y +   + +ALEL+R
Sbjct: 141 --------NTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWR 192

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
           EM   +  + P+  TMVSVL AC+ + AL  G  +H ++   G++  + + +AL+ MYA+
Sbjct: 193 EM--RAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAK 250

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           CG +E    VF  M  +DV++W+S+I     HG+G  A+ +F  M+  G+ P+ ++F+ V
Sbjct: 251 CGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGV 310

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           L +C+H GLV +GK  F SM   H + P V+HY CMVDLLGR+  +EEA ++I D+  EP
Sbjct: 311 LISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEP 370

Query: 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
              +W +LLG+CRI+ NVE+AE A  +L  L+P   G+YVLL+++YA A+ W+ V  ++R
Sbjct: 371 DAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRR 430

Query: 518 LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKV 577
            L    +Q++PGRS IE +  ++ F+S D  HP+ ++++ +L  +   +++ GY P T +
Sbjct: 431 TLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGL 490

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           VL D+D + KER +  HSEKLAVAFGL+ T  G T+RITKNLR CEDCHS  K I+    
Sbjct: 491 VLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLYE 550

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +++++RD NRFHHF  G CSC DYW
Sbjct: 551 RKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 199/469 (42%), Gaps = 60/469 (12%)

Query: 7   PQTPQLLRSPYHTNSI--------AHLPPKPSSVCCCVSLNSSTTPTSLSSRN---KNEL 55
           P+ P+LL + +  +          A +P          SL++    +  ++ +   +  L
Sbjct: 22  PRAPRLLDNSFSLSLAMQASAALSASVPAMRDLGLGAASLHARALKSGFAAADLFVRTAL 81

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           +++  K G    A       P        ++L +      +++A  V     D   ++D 
Sbjct: 82  VEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVF----DGMRERDM 137

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
                +I+ Y+    VD AR VF+    R  + W+++  A T   R ++ LEL+R M   
Sbjct: 138 VSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAA 197

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
              +  D  T   VL AC         L  G E+H  V  +G    V + T LIDMYA+ 
Sbjct: 198 C--VNPDCTTMVSVLSAC----SDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKC 251

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G +  +  VF  M VK+V++WS+MI   A +G   +AL LF  M+ E   L PN VT + 
Sbjct: 252 GDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEG--LQPNEVTFIG 309

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           VL +C  L  +  GK                  S++  ++    K++   C+ D +    
Sbjct: 310 VLISCTHLGLVSDGK---------------KYFSSMSVVHGVTPKVQHYGCMVDLL---- 350

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
                      G  G+  +A Q+ ++M +    P  + + ++LGAC     VE  +   E
Sbjct: 351 -----------GRSGHIEEAKQLIRDMPFE---PDAVIWRALLGACRIYKNVEVAE---E 393

Query: 416 SMRKEHMIRPSVE-HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
           +M K  ++ P  + HY  + ++  +AN  E  A++   LR E   ++ G
Sbjct: 394 AMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPG 442



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 107/261 (40%), Gaps = 73/261 (27%)

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAA-------LEQGKM-IHGYILRRGLDSI-LPV 327
           R ++  +  L  NS ++   +QA AAL+A       L  G   +H   L+ G  +  L V
Sbjct: 18  RSVLPRAPRLLDNSFSLSLAMQASAALSASVPAMRDLGLGAASLHARALKSGFAAADLFV 77

Query: 328 VSALVTMYARCGKLELGQC-------------------------------VFDHMDKRDV 356
            +ALV  YA+ G+ +L +                                VFD M +RD+
Sbjct: 78  RTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRERDM 137

Query: 357 VSWNSLISSYGVHG--------YGG-----------------------KAIQIFKEMIYH 385
           VSWN++I  Y V+G        + G                        A+++++EM   
Sbjct: 138 VSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAA 197

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
            V+P   + VSVL ACS  G +  G  + + + + + +   V+    ++D+  +   +E 
Sbjct: 198 CVNPDCTTMVSVLSACSDMGALAVGAEVHQFV-ESNGVELDVKLGTALIDMYAKCGDIEN 256

Query: 446 AAKIIEDLRIEPGPKVWGSLL 466
           + ++   + ++     W S++
Sbjct: 257 SVRVFHSMPVKD-VLTWSSMI 276


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/586 (37%), Positives = 333/586 (56%), Gaps = 9/586 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PTQ  +   + +C    S+     +H      G   + F+ + L ++YS   ++ DA  V
Sbjct: 104 PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKV 163

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++   +    W A+    +  G  EE L  +++M      I  D+      L AC A  
Sbjct: 164 FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTI--DQHVLCSTLGACGA-- 219

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS-QMAVKNVVSW 256
                 K G+ +H+SV++ G+   + +   L DMY++ G +  A  VF      +NVVS+
Sbjct: 220 --LKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSY 277

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + +I  Y       + L +F E+      + PN  T  S+++ACA  AALEQG  +H  +
Sbjct: 278 TCLIDGYVETEQIEKGLSVFVEL--RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 335

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++   D    V S LV MY +CG LE     FD +     ++WNSL+S +G HG G  AI
Sbjct: 336 MKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAI 395

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           +IF+ M+  GV P+ I+F+S+L  CSHAGLVEEG   F SM K + + P  EHY+C++DL
Sbjct: 396 KIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDL 455

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA +L+EA + I  +  EP    W S LG+CRIH + E+ + A+++L +LEP N+G  
Sbjct: 456 LGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGAL 515

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++YA    W++V+ V+  +    ++K+PG S ++V  K + F + D  HP+   ++
Sbjct: 516 VLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIY 575

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  L  ++K  GYVP+T  V  D+D   KE+++  HSE++AVAF LI+   G+ I + 
Sbjct: 576 EKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVK 635

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCHS  KFISK   ++I+VRD +RFHHF +G CSCGDYW
Sbjct: 636 KNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 187/368 (50%), Gaps = 13/368 (3%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            +H+ L   G+    FL   L+N+YS    +D A  +FD   +R +  W A+   L+   
Sbjct: 26  QLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNS 85

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
           +  E +  +  M   G      +F ++  ++AC +       ++ GK++H   L+ G   
Sbjct: 86  KFSEAIRTFCGMRICGE--VPTQFAFSSAIRACAS----LGSIEMGKQMHCLALKFGIGS 139

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            + + + L DMY++ G +  A  VF +M  K+ VSW+AMI  Y++ G   EAL  F++MI
Sbjct: 140 ELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMI 199

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
            E  ++  +   + S L AC AL A + G+ +H  +++ G +S + V +AL  MY++ G 
Sbjct: 200 DE--EVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGD 257

Query: 341 LELGQCVFD-HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           +E    VF    + R+VVS+  LI  Y       K + +F E+   G+ P+  +F S++ 
Sbjct: 258 MESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIK 317

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIR-PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
           AC++   +E+G  L   + K +    P V   + +VD+ G+   LE+A +  +++  +P 
Sbjct: 318 ACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEQAIQAFDEIG-DPT 374

Query: 459 PKVWGSLL 466
              W SL+
Sbjct: 375 EIAWNSLV 382



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 159/347 (45%), Gaps = 43/347 (12%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L+ GK++HA ++  GY     +   L++MY++ G + +A  +F  M  +N+VSW+AMI+ 
Sbjct: 21  LRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISG 80

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
            ++N    EA+  F  M +      P      S ++ACA+L ++E GK +H   L+ G+ 
Sbjct: 81  LSQNSKFSEAIRTFCGMRICGE--VPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIG 138

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
           S L V S L  MY++CG +     VF+ M  +D VSW ++I  Y   G   +A+  FK+M
Sbjct: 139 SELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKM 198

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEG--------KMLFES------------MRKEHM 422
           I   V+       S LGAC      + G        K+ FES             +   M
Sbjct: 199 IDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDM 258

Query: 423 IRPS-----------VEHYACMVDLLGRANKLEEAAKIIEDLR---IEPGPKVWGSLLGS 468
              S           V  Y C++D      ++E+   +  +LR   IEP    + SL+ +
Sbjct: 259 ESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKA 318

Query: 469 CRIHCNVE----LAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
           C     +E    L  +  K  F+ +P  +    +L D+Y    + ++
Sbjct: 319 CANQAALEQGTQLHAQVMKINFDEDPFVSS---ILVDMYGKCGLLEQ 362



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 67/125 (53%)

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           ++  +  V+Q  A    L +GK +H  ++  G      + + LV MY++CG+L+    +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M +R++VSW ++IS    +    +AI+ F  M   G  P+  +F S + AC+  G +E
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 409 EGKML 413
            GK +
Sbjct: 124 MGKQM 128


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/585 (36%), Positives = 347/585 (59%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+  +L +C      +    VH       + ++ F+  +LI++Y     VDDA  V
Sbjct: 244 PNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQV 303

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++  +  +  W+ +      + + EE +E++ RM   G  +  ++FT   +L+AC +  
Sbjct: 304 FEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMR-RGL-VLPNQFTLASLLQACAS-- 359

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L+ G +IH  V++ G +  V +   L+DMYA+ G +  +  +FS+      VSW+
Sbjct: 360 --LVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWN 417

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            +I  Y + G   +AL LF++M+     +    VT  SVL+ACA +AALE G  IH   +
Sbjct: 418 TVIVGYVQAGNGEKALILFKDML--ECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSV 475

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           +   D    V +AL+ MYA+CG ++  + VFD + + D VSWN++IS Y VHG  G+A++
Sbjct: 476 KTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALK 535

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
            F+ M+     P  ++FV +L ACS+AGL++ G+  F+SM +E+ I P  EHY CMV LL
Sbjct: 536 TFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLL 595

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GR+  L++AAK++ ++  EP   VW +LL +C IH +VEL   +++R+ E+EP +   +V
Sbjct: 596 GRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHV 655

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++YA A  W  V  ++  ++ +G++K PG S IE + +++ F   D  HP  + ++ 
Sbjct: 656 LLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLING 715

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
           +L  L+ + + +GYVP    VL D++  +KE+ +  HSE+LA+A+GLI T     +RI K
Sbjct: 716 MLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIK 775

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH+  K ISK   ++I++RD+NRFHHF  G+CSCGDYW
Sbjct: 776 NLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 155/327 (47%), Gaps = 8/327 (2%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P    + Y  LL SC  +   +    +H  +   G   D F    L+N Y  +DS+ DA 
Sbjct: 40  PEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAA 99

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            +FD+   R    +  L +  +   R  E + L+ R+ G G  +  + F ++ VLK  V+
Sbjct: 100 KLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHEL--NPFVFSTVLKLLVS 157

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           +       K G  +HA V + G++    + T LID Y+  G    A  VF  +  K++VS
Sbjct: 158 AEWA----KLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVS 213

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+ M+ACY  N    E+L+LF  M +      PN+ T  SVL+AC  L     GK +HG 
Sbjct: 214 WTGMVACYVENECFEESLKLFSRMRIVGFK--PNNFTFASVLKACVGLEVFNVGKAVHGC 271

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
             +      L V   L+ +Y + G ++    VF+ M K DV+ W+ +I+ Y       +A
Sbjct: 272 AFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEA 331

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACS 402
           I++F  M    V P+  +  S+L AC+
Sbjct: 332 IEMFCRMRRGLVLPNQFTLASLLQACA 358



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 137/277 (49%), Gaps = 17/277 (6%)

Query: 182 DRFTYTYVLKACVAS-SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
           + + Y  +L++C+ +  C       GK +H  +++ G    +     L++ Y ++  +  
Sbjct: 43  NTYIYGSLLQSCIRNGDCA-----TGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPD 97

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  +F +M  +N VS+  +I  Y++     EA+ LF  +  E H+L P   + V  L   
Sbjct: 98  AAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVS 157

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           A  A L  G  +H  + + G DS   V +AL+  Y+ CG  E  + VFD ++ +D+VSW 
Sbjct: 158 AEWAKL--GFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWT 215

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML----FES 416
            +++ Y  +    +++++F  M   G  P+  +F SVL AC    +   GK +    F++
Sbjct: 216 GMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKT 275

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
              E +    VE    ++DL  ++  +++A ++ E++
Sbjct: 276 SYLEELF-VGVE----LIDLYIKSGDVDDALQVFEEM 307


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/610 (37%), Positives = 343/610 (56%), Gaps = 19/610 (3%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N +I +  + G+L  AL V       T  T+  +L   ++       + V   L D   +
Sbjct: 9   NRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRG---KIKVARQLFDRIPE 65

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            D F    ++  Y H   V+ AR  FD+   +    WN +    +  G  ++  EL+  M
Sbjct: 66  PDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVM 125

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                 +R +  ++  ++   V S     L K   E+  + +R      V   T +I  +
Sbjct: 126 -----PVR-NSVSWNAMISGYVESG-DLDLAKQLFEV--APVRS-----VVAWTAMITGF 171

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
            +FG +  A   F +M +KN+V+W+AMIA Y  N  A   L+LF+ M+       PN  +
Sbjct: 172 MKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMV--ESGFRPNPSS 229

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           + SVL  C+ L+AL+ GK +H  I +  +   +   ++L++MY +CG LE    +F  M 
Sbjct: 230 LSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP 289

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
           ++DVV+WN++IS Y  HG G KA+ +F +M   G+ P  I+FV+VL AC+HAG V+ G  
Sbjct: 290 QKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIE 349

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            F SM +++ +    +HY C+VDLLGR  KL EA  +I+ +  +P   ++G+LLG+CRIH
Sbjct: 350 YFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIH 409

Query: 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
            N+ELAE A+K L  L+P +A  YV LA+VYAA + WD V  V+R ++   + K PG S 
Sbjct: 410 KNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSW 469

Query: 533 IEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVL 592
           IEVK  ++ F S D  HP+   +H  L  L  +M+  GYVP  +  L+D+  E+K++I+L
Sbjct: 470 IEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILL 529

Query: 593 GHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652
            HSEKLA+A+GLI    G  IR+ KNLR+C DCHS TK+IS    + I+VRD  RFHHFR
Sbjct: 530 RHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFR 589

Query: 653 NGVCSCGDYW 662
            G CSCGDYW
Sbjct: 590 QGECSCGDYW 599



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 31/242 (12%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           NV+S + +I  + R+G    AL +F  M +++      +VT  S+L   +      +GK+
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKT------TVTWNSMLAGYSN----RRGKI 53

Query: 312 IHGYILRRGLDSI----LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
               + R+  D I    +   + ++  Y     +E  +  FD M  +D  SWN++IS + 
Sbjct: 54  ---KVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFS 110

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-- 425
            +G   +A ++F  M       + +S+ +++     +G ++  K LFE       + P  
Sbjct: 111 QNGMMDQARELFLVMPVR----NSVSWNAMISGYVESGDLDLAKQLFE-------VAPVR 159

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
           SV  +  M+    +  K+E A K  E++ ++     W +++     +C  E   +  KR+
Sbjct: 160 SVVAWTAMITGFMKFGKIELAEKYFEEMPMK-NLVTWNAMIAGYIENCQAENGLKLFKRM 218

Query: 486 FE 487
            E
Sbjct: 219 VE 220


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/646 (34%), Positives = 360/646 (55%), Gaps = 55/646 (8%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I +L + G +R+AL ++       +  + T  TY   L +C    SL     +H+ +
Sbjct: 239 NMMIAALSQSGRVREALGLVVEMHRKGVRLDST--TYTSSLTACARLFSLGWGKQLHAKV 296

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             +    DP++ + LI +Y+   S  +A+ VF+  + R    W  L           + +
Sbjct: 297 IRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSV 356

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL+ +M      I  D+F    ++  C         L  G+++H+  L+ G+N  + +  
Sbjct: 357 ELFNQMRAELMAI--DQFALATLISGCFNRMD----LCLGRQLHSLCLKSGHNRAIVVSN 410

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM------- 279
           +LI +YA+ G +  A FVFS M+ +++VSW++MI  Y++ G   +A E F  M       
Sbjct: 411 SLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAIT 470

Query: 280 -----------------------IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
                                  ++   D+ P+ VT V++ + CA + A + G  I G+ 
Sbjct: 471 WNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHT 530

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++ GL   + V +A +TMY++CG++   Q +FD ++ +DVVSWN++I+ Y  HG G +A 
Sbjct: 531 VKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAA 590

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           + F +M+  G  P  IS+V+VL  CSH+GLV+EGK+ F+ M + H I P +EH++CMVDL
Sbjct: 591 KTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDL 650

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA  L EA  +I+ + ++P  +VWG+LL +C+IH N ELAE A+K +FEL+  ++G+Y
Sbjct: 651 LGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSY 710

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           +LLA +Y+ A   D+  +V++L+  +G++K PG S +EV+ K++ F + D  HPQ   + 
Sbjct: 711 MLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIR 770

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  L  ++   GYV             E  R  + HSEKLAVAFG+++      I I 
Sbjct: 771 NKLDELMEKIAHLGYVRT-----------ESPRSEIHHSEKLAVAFGIMSLPAWMPIHIM 819

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+  K IS   ++E ++RD  RFHHF++G CSCGDYW
Sbjct: 820 KNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 159/318 (50%), Gaps = 12/318 (3%)

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           F    ++  Y+    +D A   F+    R +  WN +  AL+ +GR  E L L   M+  
Sbjct: 205 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 264

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
           G  +R D  TYT  L AC      FSL   GK++HA V+R       ++ + LI++YA+ 
Sbjct: 265 G--VRLDSTTYTSSLTACARL---FSL-GWGKQLHAKVIRSLPQIDPYVASALIELYAKC 318

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G    A  VF+ +  +N VSW+ +I    +     +++ELF +M  E   +  +   + +
Sbjct: 319 GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAEL--MAIDQFALAT 376

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           ++  C     L  G+ +H   L+ G +  + V ++L+++YA+CG L+  + VF  M +RD
Sbjct: 377 LISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERD 436

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           +VSW S+I++Y   G   KA + F  M     + + I++ ++LGA    G  E+G  ++ 
Sbjct: 437 IVSWTSMITAYSQIGNIIKAREFFDGMD----TRNAITWNAMLGAYIQHGAEEDGLKMYS 492

Query: 416 SMRKEHMIRPSVEHYACM 433
           +M  +  + P    Y  +
Sbjct: 493 AMLSQKDVTPDWVTYVTL 510



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 156/327 (47%), Gaps = 50/327 (15%)

Query: 113 QDPFLVTK--LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           ++P ++T   ++N Y+   S+ DA  +FD+  RR +  WN L      A R  + LE + 
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL----RHGYNGIVHIMT 226
            M+ +G  +  + FT+  V+K+C A  C        +E+   +L    +  + G   + T
Sbjct: 127 SMHRSGDSL-PNAFTFCCVMKSCGALGC--------RELAPQLLGLFWKFDFWGDPDVET 177

Query: 227 TLIDMYARFGCVMYAGFVFSQ-------------------------------MAVKNVVS 255
            L+DM+ R G V +A  +FSQ                               MA ++VVS
Sbjct: 178 ALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVS 237

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+ MIA  +++G   EAL L  EM  +   L  +S T  S L ACA L +L  GK +H  
Sbjct: 238 WNMMIAALSQSGRVREALGLVVEMHRKGVRL--DSTTYTSSLTACARLFSLGWGKQLHAK 295

Query: 316 ILRRGLDSILP-VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
           ++ R L  I P V SAL+ +YA+CG  +  + VF+ +  R+ VSW  LI     +    K
Sbjct: 296 VI-RSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSK 354

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGAC 401
           ++++F +M    ++    +  +++  C
Sbjct: 355 SVELFNQMRAELMAIDQFALATLISGC 381



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 36/196 (18%)

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG------------ 339
            +   L++C +  AL   + +HG ++  GL S + + + L+  Y  CG            
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRAD 65

Query: 340 --------------------KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
                                L   + +FD M +RDV SWN+L+S Y         ++ F
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 380 KEMIYHGVS-PSPISFVSVLGACSHAGLVEEGKMLFESMRK-EHMIRPSVEHYACMVDLL 437
             M   G S P+  +F  V+ +C   G  E    L     K +    P VE    +VD+ 
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVE--TALVDMF 183

Query: 438 GRANKLEEAAKIIEDL 453
            R   ++ A+++   +
Sbjct: 184 VRCGYVDFASRLFSQI 199


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/587 (37%), Positives = 332/587 (56%), Gaps = 46/587 (7%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           VL   PNP ++T+  +L +C     + +   VH  +T  G + + F+   L+++Y     
Sbjct: 118 VLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGC 177

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
              A+ +FD+   R +  WN L      +G  ++                  R  +  ++
Sbjct: 178 NCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA-----------------RMVFDGMM 220

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
           +  + S                             +T+I  YAR G +  A  +F  M +
Sbjct: 221 EKNLVS----------------------------WSTMISGYARVGNLEEARQLFENMPM 252

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           +NVVSW+AMIA YA+N    +A+ELFR+M  E   L PN VT+VSVL ACA L AL+ GK
Sbjct: 253 RNVVSWNAMIAGYAQNEKYADAIELFRQMQHEG-GLAPNDVTLVSVLSACAHLGALDLGK 311

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            IH +I R  ++  L + +AL  MYA+CG +   + VF  M +RDV+SW+ +I    ++G
Sbjct: 312 WIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYG 371

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
           Y  +A   F EMI  G+ P+ ISF+ +L AC+HAGLV++G   F+ M + + I P +EHY
Sbjct: 372 YANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHY 431

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
            C+VDLL RA +L++A  +I  + ++P   VWG+LLG CRI+ + E  ER   R+ EL+ 
Sbjct: 432 GCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDS 491

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
            ++G+ V LA+VYA+    D+    +  +      K PG S IE+   +Y F   D  HP
Sbjct: 492 NHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHP 551

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           Q  ++++++  L  +MK  GY P+T +V++++D EEKE  +  HSEKLA+AFGLINTS+G
Sbjct: 552 QSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEG 611

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
            TIRI KNLR+C DCH   K ISK   +EI+VRD +RFHHF++G CS
Sbjct: 612 TTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 123/236 (52%), Gaps = 10/236 (4%)

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQ-MAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
           I    I + +  G + ++  +F+  ++  N+ +++A++  ++++      +  F   ++ 
Sbjct: 60  IAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVL 119

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
            +   P+  T  SVL+ACA LA + +G+ +H ++ + G +S L V ++LV +Y + G   
Sbjct: 120 PNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNC 179

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
           + Q +FD M  RDVVSWN+LIS Y   G   KA  +F  M+   +    +S+ +++   +
Sbjct: 180 IAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNL----VSWSTMISGYA 235

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
             G +EE + LFE+M   +++      +  M+    +  K  +A ++   ++ E G
Sbjct: 236 RVGNLEEARQLFENMPMRNVVS-----WNAMIAGYAQNEKYADAIELFRQMQHEGG 286


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/618 (34%), Positives = 349/618 (56%), Gaps = 43/618 (6%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS--VDDARH 136
            +H    LL SCT   +L +   +H+ L   G   +P    + +   +  ++  +D A  
Sbjct: 8   AKHPTISLLNSCT---TLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANK 64

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR-MNGTGTGIRSDRFTYTYVLKACVA 195
           + +     T++  N++ RA + +    +    Y   ++     +  D +T+T++++ C  
Sbjct: 65  LLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQ 124

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC------------------ 237
                +    G  +H +V++HG+    H+ T L+ MYA  GC                  
Sbjct: 125 LQAHVT----GLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVT 180

Query: 238 -------------VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
                        + +A  +F +M  ++ V+W+AMIA YA+ G + EAL++F  M ME  
Sbjct: 181 QTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGV 240

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
            L  N V+MV VL AC  L  L+ G+ +H Y+ R  +   + + +ALV MYA+CG ++  
Sbjct: 241 KL--NEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRA 298

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
             VF  M +R+V +W+S I    ++G+G +++ +F +M   GV P+ I+F+SVL  CS  
Sbjct: 299 MQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVV 358

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           GLVEEG+  F+SMR  + I P +EHY  MVD+ GRA +L+EA   I  + + P    W +
Sbjct: 359 GLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSA 418

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +CR++ N EL E A +++ ELE  N G YVLL+++YA    W+ V  +++ ++A+G+
Sbjct: 419 LLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGV 478

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +K+PG S IEV  +++ F+  D+ HP+++++   L  +S  ++  GYV  T  VL+D++ 
Sbjct: 479 KKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEE 538

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           EEKE  +  HSEK+A+AFGLI+      IR+  NLR+C DCH+  K ISK  N+EI+VRD
Sbjct: 539 EEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRD 598

Query: 645 VNRFHHFRNGVCSCGDYW 662
            NRFHHF++G CSC DYW
Sbjct: 599 RNRFHHFKDGECSCKDYW 616



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 53/367 (14%)

Query: 38  LNSSTTPTSLSSRNKNELIQSLCKQGNLRQAL----DVLSIEPN---PTQHTYELLLLSC 90
           LN +  PT  +    N +I++  K     ++     ++L    N   P  +T+  L+ +C
Sbjct: 66  LNHNNNPTLFTL---NSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTC 122

Query: 91  THHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH----------FD----------- 129
               +    L VH  +  +GF+ DP + T L+ +Y+           FD           
Sbjct: 123 AQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQT 182

Query: 130 ----------SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
                      +D AR +FD+   R    WNA+       GR  E L+++  M     G+
Sbjct: 183 AMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQ--MEGV 240

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
           + +  +   VL AC        +L HG+ +HA V R+     V + T L+DMYA+ G V 
Sbjct: 241 KLNEVSMVLVLSACTH----LQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVD 296

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
            A  VF  M  +NV +WS+ I   A NG   E+L+LF +M  E   + PN +T +SVL+ 
Sbjct: 297 RAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREG--VQPNGITFISVLKG 354

Query: 300 CAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR-DV 356
           C+ +  +E+G+  H   +R   G+   L     +V MY R G+L+      + M  R  V
Sbjct: 355 CSVVGLVEEGRK-HFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHV 413

Query: 357 VSWNSLI 363
            +W++L+
Sbjct: 414 GAWSALL 420


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/604 (34%), Positives = 354/604 (58%), Gaps = 46/604 (7%)

Query: 94  NSLSDALNVHSHLTDNGF---DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN 150
            S+ + L +H+ +  +      + P L  KL   Y+    +  +  +F +T    ++++ 
Sbjct: 40  QSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFT 99

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
           A     ++ G  ++   LY ++    + I  + FT++ +LK+C          K GK IH
Sbjct: 100 AAINTASINGLKDQAFLLYVQL--LSSEINPNEFTFSSLLKSCST--------KSGKLIH 149

Query: 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR----- 265
             VL+ G     ++ T L+D+YA+ G V+ A  VF +M  +++VS +AMI CYA+     
Sbjct: 150 THVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVE 209

Query: 266 --------------------------NGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
                                     +G   +AL LF++++ E     P+ +T+V+ L A
Sbjct: 210 AARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPK-PDEITVVAALSA 268

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           C+ + ALE G+ IH ++    +   + V + L+ MY++CG LE    VF+   ++D+V+W
Sbjct: 269 CSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAW 328

Query: 360 NSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           N++I+ Y +HGY   A+++F EM    G+ P+ I+F+  L AC+HAGLV EG  +FESM 
Sbjct: 329 NAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMG 388

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
           +E+ I+P +EHY C+V LLGRA +L+ A + I+++ ++    +W S+LGSC++H +  L 
Sbjct: 389 QEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLG 448

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRK 538
           +  ++ L  L   N+G YVLL+++YA+   ++ V +V+ L++ +G+ K PG S IE++ K
Sbjct: 449 KEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENK 508

Query: 539 MYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKL 598
           ++ F + D  H + ++++ +L  +S  +K  GYVP T  VL DL+  EKE+ +  HSE+L
Sbjct: 509 VHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERL 568

Query: 599 AVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSC 658
           A+A+GLI+T  G  ++I KNLR+C DCH+ TK ISK   ++I++RD NRFHHF +G CSC
Sbjct: 569 AIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSC 628

Query: 659 GDYW 662
           GD+W
Sbjct: 629 GDFW 632



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 43/335 (12%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH- 127
           + +LS E NP + T+  LL SC    S      +H+H+   G   DP++ T L++VY+  
Sbjct: 119 VQLLSSEINPNEFTFSSLLKSC----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKG 174

Query: 128 ---------FD---------------------SVDDARHVFDKTRRRTIYVWNALFRALT 157
                    FD                     +V+ AR +FD    R I  WN +     
Sbjct: 175 GDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYA 234

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
             G   + L L++++   G   + D  T    L AC  S  G   L+ G+ IH  V    
Sbjct: 235 QHGFPNDALMLFQKLLAEGKP-KPDEITVVAALSAC--SQIG--ALETGRWIHVFVKSSR 289

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
               V + T LIDMY++ G +  A  VF+    K++V+W+AMIA YA +G + +AL LF 
Sbjct: 290 IRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFN 349

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYA 336
           EM      L P  +T +  LQACA    + +G ++        G+   +     LV++  
Sbjct: 350 EM-QGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLG 408

Query: 337 RCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
           R G+L+       +M+   D V W+S++ S  +HG
Sbjct: 409 RAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHG 443



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 118/285 (41%), Gaps = 45/285 (15%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           +P P + T    L +C+   +L     +H  +  +    +  + T LI++YS   S+++A
Sbjct: 254 KPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEA 313

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
             VF+ T R+ I  WNA+     + G  ++ L L+  M G  TG++    T+   L+AC 
Sbjct: 314 VLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGI-TGLQPTDITFIGTLQACA 372

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NV 253
                          HA ++  G           I ++   G          +  +K  +
Sbjct: 373 ---------------HAGLVNEG-----------IRIFESMG---------QEYGIKPKI 397

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
             +  +++   R G    A E  + M M++     +SV   SVL +C        GK I 
Sbjct: 398 EHYGCLVSLLGRAGQLKRAYETIKNMNMDA-----DSVLWSSVLGSCKLHGDFVLGKEIA 452

Query: 314 GYILRRGLDSILPVVSALVT-MYARCGKLELGQCVFDHMDKRDVV 357
            Y++  GL+     +  L++ +YA  G  E    V + M ++ +V
Sbjct: 453 EYLI--GLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIV 495


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/625 (36%), Positives = 362/625 (57%), Gaps = 27/625 (4%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI +   +G  R AL    +V  +       T   ++++C     L   L  H  +  
Sbjct: 110 NTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLVRQL--HCFVVV 167

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEV 165
            G+D    +   ++  YS    +++AR VF +      R    WNA+  A      G E 
Sbjct: 168 CGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEA 227

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKA--CVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           +EL+R M     G++ D FT   VL A  CV    G      G + H  +++ G++G  H
Sbjct: 228 VELFREM--VRRGLKVDMFTMASVLTAFTCVKDLVG------GMQFHGMMIKSGFHGNSH 279

Query: 224 IMTTLIDMYAR-FGCVMYAGFVFSQMAVKNVVSWSAMIACYAR-NGMAFEALELFREMIM 281
           + + LID+Y++  G ++    VF ++A  ++V W+ MI+ +++   ++ + +  FREM  
Sbjct: 280 VGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREM-- 337

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-SILPVVSALVTMYARCGK 340
           + +   P+  + V V  AC+ L++   GK +H   ++  +  + + V +ALV MY++CG 
Sbjct: 338 QHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGN 397

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +   + VFD M + ++VS NS+I+ Y  HG   +++++F+ M+   ++P+ I+F++VL A
Sbjct: 398 VHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSA 457

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
           C H G VEEG+  F  M++   I P  EHY+CM+DLLGRA KL+EA +IIE +   PG  
Sbjct: 458 CVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSI 517

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
            W +LLG+CR H NVELA +A+    +LEP NA  YV+L+++YA+A  W+E   VKRL+ 
Sbjct: 518 EWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMR 577

Query: 521 ARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY 580
            RG++K PG S IE+ +K++ FV+ D  HP  +++H  +  +  +MK+ GYVP  +  L 
Sbjct: 578 ERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALV 637

Query: 581 ---DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
              +++ +EKER +L HSEKLAVAFGLI+T +   I + KNLR+C DCH+  K IS    
Sbjct: 638 KDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITG 697

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +EI VRD +RFH F+ G CSCGDYW
Sbjct: 698 REITVRDTHRFHCFKEGHCSCGDYW 722



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 12/246 (4%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
            TLI+ YA+   +  A  VF ++   ++VS++ +IA YA  G    AL LF E+      
Sbjct: 79  NTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFG 138

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           L  +  T+  V+ AC     L   + +H +++  G D    V +A++  Y+R G L   +
Sbjct: 139 L--DGFTLSGVIIACGDDVGLV--RQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEAR 194

Query: 346 CVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
            VF  M +   RD VSWN++I + G H  G +A+++F+EM+  G+     +  SVL A +
Sbjct: 195 RVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFT 254

Query: 403 HA-GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR-ANKLEEAAKIIEDLRIEPGPK 460
               LV  G M F  M  +     +    + ++DL  + A  + E  K+ E++   P   
Sbjct: 255 CVKDLV--GGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEI-AAPDLV 311

Query: 461 VWGSLL 466
           +W +++
Sbjct: 312 LWNTMI 317



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 4/128 (3%)

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T  ++L+AC A   L  GK +H    +  +     + +    +Y++CG L   Q  FD  
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
              +V S+N+LI++Y  H     A Q+F E+      P  +S+ +++ A +  G      
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEI----PQPDIVSYNTLIAAYADRGECRPAL 126

Query: 412 MLFESMRK 419
            LF  +R+
Sbjct: 127 RLFAEVRE 134


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/485 (41%), Positives = 314/485 (64%), Gaps = 9/485 (1%)

Query: 179 IRSDRFTYTYVLKACVAS-SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
            + + FT+  +LKA  AS S G      G++IHA  +++ ++  V++ + L+DMYAR G 
Sbjct: 37  FKPNGFTFASLLKAAGASASSGI-----GEQIHALTVKYDWHDDVYVGSALLDMYARCGR 91

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           +  A  VF Q+  KN VSW+A+IA +AR G     L +F EM  + +       T  SV 
Sbjct: 92  MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEM--QRNGFEATHFTYSSVF 149

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            A A + ALEQGK +H ++++ G      V + ++ MYA+ G +   + VFDH+DK+D+V
Sbjct: 150 SAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLV 209

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           +WNS+++++  +G G +A+  F+EM   GV  + I+F+S+L ACSH GLV+EGK  F+ M
Sbjct: 210 TWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-M 268

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
            KEH + P ++HY  +VDLLGRA  L +A   I  + ++P   VWG+LLGSCR+H N ++
Sbjct: 269 MKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKI 328

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
            + A+  +FEL+P + G  VLL ++YA+   WD   RV+++++A G++K P  S +E++ 
Sbjct: 329 GQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIEN 388

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
            ++ FV+ D+ HP+ E+++     +S ++++ GYVP T  VL  +D +E++  +  HSEK
Sbjct: 389 SVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEK 448

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           +A+AF LIN   G TIRI KN+R+C DCHS  ++ISK   +EI+VRD NRFHHF +G CS
Sbjct: 449 IALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFEREIVVRDTNRFHHFSSGSCS 508

Query: 658 CGDYW 662
           CGDYW
Sbjct: 509 CGDYW 513



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 9/293 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+  LL +     S      +H+      +  D ++ + L+++Y+    +D A  V
Sbjct: 39  PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAV 98

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+   +    WNAL       G GE  L ++  M     G  +  FTY+ V  A     
Sbjct: 99  FDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQ--RNGFEATHFTYSSVFSAI---- 152

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G   L+ GK +HA +++ G      +  T++DMYA+ G ++ A  VF  +  K++V+W+
Sbjct: 153 AGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWN 212

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           +M+  +A+ G+  EA+  F EM      L  N +T +S+L AC+    +++GK     + 
Sbjct: 213 SMLTAFAQYGLGREAVTHFEEMRKCGVHL--NQITFLSILTACSHGGLVKEGKQYFDMMK 270

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQC-VFDHMDKRDVVSWNSLISSYGVH 369
              L+  +     +V +  R G L      +F    K     W +L+ S  +H
Sbjct: 271 EHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMH 323



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 12/223 (5%)

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M+ +++ SW+++IA YA+N M  EAL L   M+       PN  T  S+L+A  A A+  
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGR--FKPNGFTFASLLKAAGASASSG 58

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+ IH   ++      + V SAL+ MYARCG++++   VFD ++ ++ VSWN+LI+ + 
Sbjct: 59  IGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFA 118

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
             G G   + +F EM  +G   +  ++ SV  A +  G +E+GK +       HMI+   
Sbjct: 119 RKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWV-----HAHMIKSGE 173

Query: 428 EHYA----CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
              A     ++D+  ++  + +A K+ + +  +     W S+L
Sbjct: 174 RLSAFVGNTILDMYAKSGSMIDARKVFDHVD-KKDLVTWNSML 215


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/646 (34%), Positives = 360/646 (55%), Gaps = 55/646 (8%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I +L + G +R+AL ++       +  + T  TY   L +C    SL     +H+ +
Sbjct: 229 NMMIAALSQSGRVREALGLVVEMHRKGVRLDST--TYTSSLTACARLFSLGWGKQLHAKV 286

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             +    DP++ + LI +Y+   S  +A+ VF+  + R    W  L           + +
Sbjct: 287 IRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSV 346

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL+ +M      I  D+F    ++  C         L  G+++H+  L+ G+N  + +  
Sbjct: 347 ELFNQMRAELMAI--DQFALATLISGCFNRMD----LCLGRQLHSLCLKSGHNRAIVVSN 400

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM------- 279
           +LI +YA+ G +  A FVFS M+ +++VSW++MI  Y++ G   +A E F  M       
Sbjct: 401 SLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAIT 460

Query: 280 -----------------------IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
                                  ++   D+ P+ VT V++ + CA + A + G  I G+ 
Sbjct: 461 WNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHT 520

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++ GL   + V +A +TMY++CG++   Q +FD ++ +DVVSWN++I+ Y  HG G +A 
Sbjct: 521 VKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAA 580

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           + F +M+  G  P  IS+V+VL  CSH+GLV+EGK+ F+ M + H I P +EH++CMVDL
Sbjct: 581 KTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDL 640

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA  L EA  +I+ + ++P  +VWG+LL +C+IH N ELAE A+K +FEL+  ++G+Y
Sbjct: 641 LGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSY 700

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           +LLA +Y+ A   D+  +V++L+  +G++K PG S +EV+ K++ F + D  HPQ   + 
Sbjct: 701 MLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIR 760

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             +  L  ++   GYV             E  R  + HSEKLAVAFG+++      I I 
Sbjct: 761 NKMDELMEKIAHLGYVRT-----------ESPRSEIHHSEKLAVAFGIMSLPAWMPIHIM 809

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+  K IS   ++E ++RD  RFHHF++G CSCGDYW
Sbjct: 810 KNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 159/318 (50%), Gaps = 12/318 (3%)

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           F    ++  Y+    +D A   F+    R +  WN +  AL+ +GR  E L L   M+  
Sbjct: 195 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 254

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
           G  +R D  TYT  L AC      FSL   GK++HA V+R       ++ + LI++YA+ 
Sbjct: 255 G--VRLDSTTYTSSLTACARL---FSL-GWGKQLHAKVIRSLPQIDPYVASALIELYAKC 308

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G    A  VF+ +  +N VSW+ +I    +     +++ELF +M  E   +  +   + +
Sbjct: 309 GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAEL--MAIDQFALAT 366

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           ++  C     L  G+ +H   L+ G +  + V ++L+++YA+CG L+  + VF  M +RD
Sbjct: 367 LISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERD 426

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           +VSW S+I++Y   G   KA + F  M     + + I++ ++LGA    G  E+G  ++ 
Sbjct: 427 IVSWTSMITAYSQIGNIIKAREFFDGM----ATRNAITWNAMLGAYIQHGAEEDGLKMYS 482

Query: 416 SMRKEHMIRPSVEHYACM 433
           +M  +  + P    Y  +
Sbjct: 483 AMLSQKDVTPDWVTYVTL 500



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 153/367 (41%), Gaps = 52/367 (14%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P+         L SC    +L+ A  +H  L   G     FL   L++ Y    ++ DAR
Sbjct: 16  PHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDAR 75

Query: 136 HVF-DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN----GTGTGIRSDRFTYTYVL 190
            +     +   +   N +       G   +  EL+ RM      +   + SD        
Sbjct: 76  RLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSW 135

Query: 191 KACVASSCGFSLLKHGKEIHASVL----RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
            +C A  C        +E+   +L    +  + G   + T L+DM+ R G V +A  +FS
Sbjct: 136 MSCGALGC--------RELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFS 187

Query: 247 Q-------------------------------MAVKNVVSWSAMIACYARNGMAFEALEL 275
           Q                               MA ++VVSW+ MIA  +++G   EAL L
Sbjct: 188 QIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGL 247

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP-VVSALVTM 334
             EM  +   L  +S T  S L ACA L +L  GK +H  ++ R L  I P V SAL+ +
Sbjct: 248 VVEMHRKGVRL--DSTTYTSSLTACARLFSLGWGKQLHAKVI-RSLPQIDPYVASALIEL 304

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           YA+CG  +  + VF+ +  R+ VSW  LI     +    K++++F +M    ++    + 
Sbjct: 305 YAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFAL 364

Query: 395 VSVLGAC 401
            +++  C
Sbjct: 365 ATLISGC 371



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 61/317 (19%), Positives = 115/317 (36%), Gaps = 86/317 (27%)

Query: 286 LCPNSVT--MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC----- 338
           L P++VT  +   L++C +  AL   + +HG ++  GL S + + + L+  Y  C     
Sbjct: 14  LLPHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSD 73

Query: 339 ---------------------------GKLELGQCVFDHMDKRDVVSWNSLIS------- 364
                                      G L   + +FD M +RDV SWN+L+S       
Sbjct: 74  ARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAG 133

Query: 365 ------SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
                 + G      + + +F +  + G      + V +   C   G V+    LF  + 
Sbjct: 134 SWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC---GYVDFASRLFSQIE 190

Query: 419 K--------------------------EHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           +                          E M    V  +  M+  L ++ ++ EA  ++ +
Sbjct: 191 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 250

Query: 453 LR---IEPGPKVWGSLLGSC----RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           +    +      + S L +C     +    +L  +  + L +++P  A     L ++YA 
Sbjct: 251 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASA---LIELYAK 307

Query: 506 ADMWDEVKRVKRLLEAR 522
              + E KRV   L+ R
Sbjct: 308 CGSFKEAKRVFNSLQDR 324


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/582 (37%), Positives = 339/582 (58%), Gaps = 16/582 (2%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF---DSVDDARHVFDKT 141
           LL+  C   NSL + + + ++   +   +D   V KLIN  +      S+  ARH+F+  
Sbjct: 34  LLISKC---NSLRELMQIQAYAIKSHI-EDVSFVAKLINFCTESPTESSMSYARHLFEAM 89

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
               I ++N++ R  +      EV  L+  +     GI  D +T+  +LKAC  +     
Sbjct: 90  SEPDIVIFNSMARGYSRFTNPLEVFSLFVEI--LEDGILPDNYTFPSLLKACAVAKA--- 144

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L+ G+++H   ++ G +  V++  TLI+MY     V  A  VF ++    VV ++AMI 
Sbjct: 145 -LEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMIT 203

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            YAR     EAL LFREM  +   L PN +T++SVL +CA L +L+ GK IH Y  +   
Sbjct: 204 GYARRNRPNEALSLFREM--QGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
              + V +AL+ M+A+CG L+    +F+ M  +D  +W+++I +Y  HG   K++ +F+ 
Sbjct: 262 CKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFER 321

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M    V P  I+F+ +L ACSH G VEEG+  F  M  +  I PS++HY  MVDLL  A 
Sbjct: 322 MRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAG 381

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
            LE+A + I+ L I P P +W  LL +C  H N++LAE+ S+R+FEL+ ++ G+YV+L++
Sbjct: 382 NLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSN 441

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +YA    W+ V  ++++++ R   KVPG S IEV   ++ F S D       +LH  L  
Sbjct: 442 LYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDE 501

Query: 562 LSAEMKEKGYVPQTKVVLY-DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
           +  E+K  GYVP T +V++ +++ +EKE  +  HSEKLA+ FGL+NT  G TIR+ KNLR
Sbjct: 502 MVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLR 561

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH+  K IS    ++++ RDV RFHHF +G CSCGD+W
Sbjct: 562 VCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 16/298 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL +C    +L +   +H      G D + ++   LIN+Y+  + VD AR V
Sbjct: 127 PDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXV 186

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+     +  +NA+        R  E L L+R M   G  ++ +  T   VL +C    
Sbjct: 187 FDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ--GKYLKPNEITLLSVLSSCAL-- 242

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  GK IH    +H +   V + T LIDM+A+ G +  A  +F +M  K+  +WS
Sbjct: 243 --LGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWS 300

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI  YA +G A +++ +F    M S ++ P+ +T + +L AC+    +E+G+     ++
Sbjct: 301 AMIVAYANHGKAEKSMLMFER--MRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMV 358

Query: 318 RR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV----VSWNSLISSYGVHG 370
            + G+   +    ++V + +  G LE     ++ +DK  +    + W  L+++   H 
Sbjct: 359 SKFGIVPSIKHYGSMVDLLSXAGNLEDA---YEFIDKLPISPTPMLWRILLAACSSHN 413


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/646 (34%), Positives = 360/646 (55%), Gaps = 55/646 (8%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I +L + G +R+AL ++       +  + T  TY   L +C    SL     +H+ +
Sbjct: 239 NMMIAALSQSGRVREALGLVVEMHRKGVRLDST--TYTSSLTACARLFSLGWGKQLHAKV 296

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             +    DP++ + LI +Y+   S  +A+ VF+  + R    W  L           + +
Sbjct: 297 IRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSV 356

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL+ +M      I  D+F    ++  C         L  G+++H+  L+ G+N  + +  
Sbjct: 357 ELFNQMRAELMAI--DQFALATLISGCFNRMD----LCLGRQLHSLCLKSGHNRAIVVSN 410

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM------- 279
           +LI +YA+ G +  A FVFS M+ +++VSW++MI  Y++ G   +A E F  M       
Sbjct: 411 SLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAIT 470

Query: 280 -----------------------IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
                                  ++   D+ P+ VT V++ + CA + A + G  I G+ 
Sbjct: 471 WNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHT 530

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++ GL   + V +A +TMY++CG++   Q +FD ++ +DVVSWN++I+ Y  HG G +A 
Sbjct: 531 VKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAA 590

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           + F +M+  G  P  IS+V+VL  CSH+GLV+EGK+ F+ M + H I P +EH++CMVDL
Sbjct: 591 KTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDL 650

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA  L EA  +I+ + ++P  +VWG+LL +C+IH N ELAE A+K +FEL+  ++G+Y
Sbjct: 651 LGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSY 710

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           +LLA +Y+ A   D+  +V++L+  +G++K PG S +EV+ K++ F + D  HPQ   + 
Sbjct: 711 MLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIR 770

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             +  L  ++   GYV             E  R  + HSEKLAVAFG+++      I I 
Sbjct: 771 NKMDELMEKIAHLGYVRT-----------ESPRSEIHHSEKLAVAFGIMSLPAWMPIHIM 819

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+  K IS   ++E ++RD  RFHHF++G CSCGDYW
Sbjct: 820 KNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 159/318 (50%), Gaps = 12/318 (3%)

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           F    ++  Y+    +D A   F+    R +  WN +  AL+ +GR  E L L   M+  
Sbjct: 205 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 264

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
           G  +R D  TYT  L AC      FSL   GK++HA V+R       ++ + LI++YA+ 
Sbjct: 265 G--VRLDSTTYTSSLTACARL---FSL-GWGKQLHAKVIRSLPQIDPYVASALIELYAKC 318

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G    A  VF+ +  +N VSW+ +I    +     +++ELF +M  E   +  +   + +
Sbjct: 319 GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAEL--MAIDQFALAT 376

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           ++  C     L  G+ +H   L+ G +  + V ++L+++YA+CG L+  + VF  M +RD
Sbjct: 377 LISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERD 436

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           +VSW S+I++Y   G   KA + F  M     + + I++ ++LGA    G  E+G  ++ 
Sbjct: 437 IVSWTSMITAYSQIGNIIKAREFFDGM----ATRNAITWNAMLGAYIQHGAEEDGLKMYS 492

Query: 416 SMRKEHMIRPSVEHYACM 433
           +M  +  + P    Y  +
Sbjct: 493 AMLSQKDVTPDWVTYVTL 510



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 156/327 (47%), Gaps = 50/327 (15%)

Query: 113 QDPFLVTK--LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           ++P ++T   ++N Y+   S+ DA  +FD+  RR +  WN L      A R  + LE + 
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL----RHGYNGIVHIMT 226
            M+ +G  +  + FT+  V+K+C A  C        +E+   +L    +  + G   + T
Sbjct: 127 SMHRSGDSL-PNAFTFCCVMKSCGALGC--------RELAPQLLGLFWKFDFWGDPDVET 177

Query: 227 TLIDMYARFGCVMYAGFVFSQ-------------------------------MAVKNVVS 255
            L+DM+ R G V +A  +FSQ                               MA ++VVS
Sbjct: 178 ALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVS 237

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+ MIA  +++G   EAL L  EM  +   L  +S T  S L ACA L +L  GK +H  
Sbjct: 238 WNMMIAALSQSGRVREALGLVVEMHRKGVRL--DSTTYTSSLTACARLFSLGWGKQLHAK 295

Query: 316 ILRRGLDSILP-VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
           ++ R L  I P V SAL+ +YA+CG  +  + VF+ +  R+ VSW  LI     +    K
Sbjct: 296 VI-RSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSK 354

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGAC 401
           ++++F +M    ++    +  +++  C
Sbjct: 355 SVELFNQMRAELMAIDQFALATLISGC 381



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 36/196 (18%)

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG------------ 339
            +   L++C +  AL   + +HG ++  GL S + + + L+  Y  CG            
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 65

Query: 340 --------------------KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
                                L   + +FD M +RDV SWN+L+S Y         ++ F
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 380 KEMIYHGVS-PSPISFVSVLGACSHAGLVEEGKMLFESMRK-EHMIRPSVEHYACMVDLL 437
             M   G S P+  +F  V+ +C   G  E    L     K +    P VE    +VD+ 
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVE--TALVDMF 183

Query: 438 GRANKLEEAAKIIEDL 453
            R   ++ A+++   +
Sbjct: 184 VRCGYVDFASRLFSQI 199


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/610 (34%), Positives = 338/610 (55%), Gaps = 22/610 (3%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           L++     G +  A  +    P   + ++ ++L+       + DA  ++  + D    +D
Sbjct: 116 LVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPD----KD 171

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
               T +I+       VD+AR +FD+   R++  W  +        R ++  +++  M  
Sbjct: 172 NIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM-P 230

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
             T +        YV    +  +     +   K + A                +I    +
Sbjct: 231 EKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIAC-------------NAMISGLGQ 277

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A  VF  M  +N  SW  +I  + RNG   EAL+LF  ++M+   + P   T++
Sbjct: 278 KGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLF--ILMQKQGVRPTFPTLI 335

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           S+L  CA+LA+L  GK +H  ++R   D  + V S L+TMY +CG+L   + +FD    +
Sbjct: 336 SILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSK 395

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKML 413
           D++ WNS+IS Y  HG G +A+++F EM   G   P+ ++FV+ L ACS+AG+VEEG  +
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKI 455

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
           +ESM     ++P   HYACMVD+LGRA +  EA ++I+ + +EP   VWGSLLG+CR H 
Sbjct: 456 YESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHS 515

Query: 474 NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI 533
            +++AE  +K+L E+EP N+G Y+LL+++YA+   W +V  +++L++ R ++K PG S  
Sbjct: 516 QLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWT 575

Query: 534 EVKRKMYSFVSVD-EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVL 592
           EV+ K+++F       HP+ E +  +L  L   ++E GY P     L+D+D EEK   + 
Sbjct: 576 EVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLK 635

Query: 593 GHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652
            HSE+LAVA+ L+  S+G  IR+ KNLR+C DCH+  K ISK   +EI++RD NRFHHFR
Sbjct: 636 YHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFR 695

Query: 653 NGVCSCGDYW 662
           NG CSC DYW
Sbjct: 696 NGECSCKDYW 705



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 141/313 (45%), Gaps = 34/313 (10%)

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
           L D   D++      L++ Y     +D+AR VFD    R +  W AL +     G+ +  
Sbjct: 70  LFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVA 129

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
             L+ +M         ++ ++T +L        GF  L+ G+   A  L        +I 
Sbjct: 130 ESLFWKMP------EKNKVSWTVML-------IGF--LQDGRIDDACKLYEMIPDKDNIA 174

Query: 226 -TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
            T++I    + G V  A  +F +M+ ++V++W+ M+  Y +N    +A ++F        
Sbjct: 175 RTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIF-------- 226

Query: 285 DLCP--NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS--ALVTMYARCGK 340
           D+ P    V+  S+L        +E  + +   +       + PV++  A+++   + G+
Sbjct: 227 DVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVM------PVKPVIACNAMISGLGQKGE 280

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           +   + VFD M +R+  SW ++I  +  +G+  +A+ +F  M   GV P+  + +S+L  
Sbjct: 281 IAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSV 340

Query: 401 CSHAGLVEEGKML 413
           C+    +  GK +
Sbjct: 341 CASLASLHHGKQV 353



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 119/258 (46%), Gaps = 24/258 (9%)

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           +R G +  A  +F     K++ SW++M+A Y  N M  +A +LF EM         N ++
Sbjct: 28  SRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDR------NIIS 81

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
              ++        +++ + +   +  R + S     +ALV  Y   GK+++ + +F  M 
Sbjct: 82  WNGLVSGYMKNGEIDEARKVFDLMPERNVVSW----TALVKGYVHNGKVDVAESLFWKMP 137

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
           +++ VSW  ++  +   G    A +++ EMI        I+  S++      G V+E + 
Sbjct: 138 EKNKVSWTVMLIGFLQDGRIDDACKLY-EMI---PDKDNIARTSMIHGLCKEGRVDEARE 193

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           +F+ M +  +I      +  MV   G+ N++++A KI  D+  E     W S+L     +
Sbjct: 194 IFDEMSERSVIT-----WTTMVTGYGQNNRVDDARKIF-DVMPEKTEVSWTSMLMGYVQN 247

Query: 473 CNVELAERASKRLFELEP 490
             +E AE     LFE+ P
Sbjct: 248 GRIEDAE----ELFEVMP 261



 Score = 45.8 bits (107), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 6/110 (5%)

Query: 316 ILRRGLDSILPVVSALV--TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
           +LRR   + +P  +A V  T  +R GK+   + +FD  D + + SWNS+++ Y  +    
Sbjct: 6   LLRRTYSTTIPPPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPR 65

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
            A ++F EM    +    IS+  ++      G ++E + +F+ M + +++
Sbjct: 66  DARKLFDEMPDRNI----ISWNGLVSGYMKNGEIDEARKVFDLMPERNVV 111


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/565 (38%), Positives = 326/565 (57%), Gaps = 50/565 (8%)

Query: 101 NVHSHLTDNGFDQ-DPFLVTKLINVYSHFDS--VDDARHVFDKTRRRTIYVWNALFRALT 157
           ++H+    +GF   D F+ T L+ +Y+   +  +  AR  FD+  RR +++ N +  A  
Sbjct: 68  SLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAAYV 127

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
             G   E  +++  M+G       D  ++                               
Sbjct: 128 ARGEVAEARKVFDGMSG------RDLVSWN------------------------------ 151

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
                    T+I  YA  G V  A  +F     ++  SWS+MI+ YA+   + EALEL+R
Sbjct: 152 ---------TMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWR 202

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
           EM +    + P+ ++MVSVL AC+A+ AL  G  +H ++    ++  + + +ALV MYA+
Sbjct: 203 EMRVAG--VAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAK 260

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           CG +E    VF  M  +DV++W+S+I     HG G  A+ +F EMI  G+ P+ I+F+ V
Sbjct: 261 CGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGV 320

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           L AC+H GLV +GK  F SM   H + P +EHY CMVDLLGRA  +EEA ++I  +  +P
Sbjct: 321 LIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKP 380

Query: 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
            P +W +LLG+CRIH NVE+AE A  +L  L+P   G+YVLL+++YA A+ W+ V  +++
Sbjct: 381 DPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRK 440

Query: 518 LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKV 577
            +    +Q+VPGRS IE +  ++ FVS D  HP+ E+++ +L  +   +++ GY P T +
Sbjct: 441 TIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSL 500

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           VL D+D + K+R +  HSEKLA+AFGL+ T    T+RITKNLR CEDCHS  K IS   +
Sbjct: 501 VLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYD 560

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           ++++VRD NRFHHF  G CSC DYW
Sbjct: 561 RKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 114/267 (42%), Gaps = 52/267 (19%)

Query: 206 GKEIHASVLRHGYNGI-VHIMTTLIDMYARF--GCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           G  +HA  LR G+    + + T L++MYA+   G +  A   F +   ++V   + M+A 
Sbjct: 66  GASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAA 125

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y   G   EA ++F  M     DL                   +    MIHGY +R    
Sbjct: 126 YVARGEVAEARKVFDGM--SGRDL-------------------VSWNTMIHGYAVR---- 160

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
                           G + + + +FD    RD  SW+S+IS+Y       +A+++++EM
Sbjct: 161 ----------------GDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREM 204

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGK---MLFESMRKEHMIRPSVEHYACMVDLLGR 439
              GV+P  IS VSVL ACS  G +  G       ES R E  ++        +VD+  +
Sbjct: 205 RVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGT----ALVDMYAK 260

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLL 466
              +E + K+   + ++     W S++
Sbjct: 261 CGDIENSLKVFHAMPVKD-VLTWSSMI 286



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 41/215 (19%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L +C+   +L+    VH  +  N  + D  L T L+++Y+    ++++  VF     + 
Sbjct: 219 VLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKD 278

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  W+++   L   G G + L L+  M     G++ +  T+  VL AC        L+  
Sbjct: 279 VLTWSSMIIGLANHGLGHDALSLFSEM--ISQGLQPNEITFIGVLIACTH----VGLVND 332

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK+  +S+     +G+V  M         +GC                     M+    R
Sbjct: 333 GKKYFSSM--SDVHGVVPRME-------HYGC---------------------MVDLLGR 362

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
            G   EA+EL R M  +     P+ +   ++L AC
Sbjct: 363 AGHVEEAMELIRSMTFK-----PDPIIWRTLLGAC 392


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/662 (35%), Positives = 357/662 (53%), Gaps = 70/662 (10%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           +R   D++     PTQ T   +L S      +     VHS +   G   +  +   L+N+
Sbjct: 131 IRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNM 190

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM------------ 172
           Y+       A+ VFD+   R I  WNA+       G+ +  +  + +M            
Sbjct: 191 YAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMI 250

Query: 173 ---NGTGTGIRS---------------DRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
              N  G  +R+               DRFT   VL AC         L  GK+IH+ ++
Sbjct: 251 SGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSAC----ANLEKLCIGKQIHSHIV 306

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYA---------------GF---------------- 243
             G++    ++  LI MY+R G V  A               GF                
Sbjct: 307 TTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQA 366

Query: 244 --VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
             +F  +  ++VV+W+AMI  Y ++G   EA+ LFR M+       PNS T+ ++L   +
Sbjct: 367 KNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQR--PNSYTLAAMLSVAS 424

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWN 360
           +LA+L  GK IHG  ++ G    + V +AL+TMYA+ G +      FD +  +RD VSW 
Sbjct: 425 SLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWT 484

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           S+I +   HG+  +A+++F+ M+  G+ P  I++V V  AC+HAGLV +G+  F+ M+  
Sbjct: 485 SMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDV 544

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
             I P++ HYACMVDL GRA  L+EA + IE + IEP    WGSLL +CR+H N++L + 
Sbjct: 545 DKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKV 604

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
           A++RL  LEP N+G Y  LA++Y+A   W+E  ++++ ++   ++K  G S IEVK K++
Sbjct: 605 AAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVH 664

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
            F   D  HP+  +++  +  +  E+K+ GYVP T  VL+DL+ E KE+I+  HSEKLA+
Sbjct: 665 VFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAI 724

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           AFGLI+T    T+RI KNLR+C DCH+  KFISK   +EI+VRD  RFHHF++G CSC D
Sbjct: 725 AFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRD 784

Query: 661 YW 662
           YW
Sbjct: 785 YW 786



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 210/487 (43%), Gaps = 99/487 (20%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR 144
           LL  S    N    A  VH  +  +G     +L+  L+NVYS       AR +FD+   R
Sbjct: 19  LLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLR 78

Query: 145 TIYVWNALFRALTLAGRGEEVLELYRRM-----------------------------NGT 175
           T + WN +  A +  G  +   E + ++                             +  
Sbjct: 79  TAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMV 138

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
             GI   +FT T VL +  A+ C    ++ GK++H+ +++ G  G V +  +L++MYA+ 
Sbjct: 139 KEGIEPTQFTLTNVLASVAATRC----METGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC 194

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIAC-------------------------------YA 264
           G  M A FVF +M V+++ SW+AMIA                                + 
Sbjct: 195 GDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFN 254

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           + G    AL++F +M+ +S  L P+  T+ SVL ACA L  L  GK IH +I+  G D  
Sbjct: 255 QRGYDLRALDIFSKMLRDSL-LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDIS 313

Query: 325 LPVVSALVTMYARCGKLE----------------------------LG-----QCVFDHM 351
             V++AL++MY+RCG +E                            LG     + +F  +
Sbjct: 314 GIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSL 373

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             RDVV+W ++I  Y  HG  G+AI +F+ M+  G  P+  +  ++L   S    +  GK
Sbjct: 374 KDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGK 433

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
            +  S  K   I  SV     ++ +  +A  +  A++  + +R E     W S++ +   
Sbjct: 434 QIHGSAVKSGEIY-SVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQ 492

Query: 472 HCNVELA 478
           H + E A
Sbjct: 493 HGHAEEA 499



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 163/360 (45%), Gaps = 53/360 (14%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEP-----NPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N +I    ++G   +ALD+ S        +P + T   +L +C +   L     +HSH+ 
Sbjct: 247 NSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIV 306

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDAR-------------------------------- 135
             GFD    ++  LI++YS    V+ AR                                
Sbjct: 307 TTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQA 366

Query: 136 -HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
            ++F   + R +  W A+       G   E + L+R M G G    S      Y L A +
Sbjct: 367 KNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNS------YTLAAML 420

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNV 253
           + +   + L HGK+IH S ++ G    V +   LI MYA+ G +  A   F  +   ++ 
Sbjct: 421 SVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDT 480

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VSW++MI   A++G A EALELF  M+ME   L P+ +T V V  AC     + QG+   
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEG--LRPDHITYVGVFSACTHAGLVNQGRQY- 537

Query: 314 GYILRRGLDSILPVVS---ALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
            + + + +D I+P +S    +V ++ R G L+  Q   + M  + DVV+W SL+S+  VH
Sbjct: 538 -FDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVH 596



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/326 (20%), Positives = 116/326 (35%), Gaps = 82/326 (25%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           L+    K G++ QA ++     +     +  +++    H S  +A+N+   +   G   +
Sbjct: 353 LLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPN 412

Query: 115 PFLV-----------------------------------TKLINVYSHFDSVDDARHVFD 139
            + +                                     LI +Y+   ++  A   FD
Sbjct: 413 SYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFD 472

Query: 140 KTR-RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
             R  R    W ++  AL   G  EE LEL+  M     G+R D  TY  V  AC     
Sbjct: 473 LIRCERDTVSWTSMIIALAQHGHAEEALELFETM--LMEGLRPDHITYVGVFSACT---- 526

Query: 199 GFSLLKHGKEIHASVLRHG--YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                      HA ++  G  Y  ++  +  +I   + + C                   
Sbjct: 527 -----------HAGLVNQGRQYFDMMKDVDKIIPTLSHYAC------------------- 556

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
             M+  + R G+  EA E   +M +E     P+ VT  S+L AC     ++ GK+    +
Sbjct: 557 --MVDLFGRAGLLQEAQEFIEKMPIE-----PDVVTWGSLLSACRVHKNIDLGKVAAERL 609

Query: 317 LRRGLDSILPVVSALVTMYARCGKLE 342
           L    ++     SAL  +Y+ CGK E
Sbjct: 610 LLLEPENS-GAYSALANLYSACGKWE 634


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/606 (37%), Positives = 339/606 (55%), Gaps = 46/606 (7%)

Query: 53  NELIQSLCKQGNLRQALDVL-SIEPN-----PTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N L++ L      R AL +  S+ P      P  +TY L L SC   + L     +HS  
Sbjct: 89  NVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGRQIHSST 148

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
              G D + F+    I++Y+     DDA  +F++ + R +  WNA+      AG     +
Sbjct: 149 ARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAM 208

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +++R +       + D  T   +L +             GK                   
Sbjct: 209 DVFRELVALQCP-KPDAGTMASILPSM------------GK------------------- 236

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
                 AR   +     VF +M  K ++SW+AM+A Y  N M  EA+ELF  M M+   +
Sbjct: 237 ------ARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELF--MRMQKDGI 288

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P++VT+ +VL +C  ++AL  GK IH  I RR + S + + +AL+ MYA CG L+  + 
Sbjct: 289 EPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARD 348

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VFD M  RDVVSW S+IS+YG HG+G +AI +F++M   G+ P  I+FV++L ACSHAGL
Sbjct: 349 VFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGL 408

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           ++ GK  F SM  E  I P +EHYACMVDLLGRA  + EA   I  + I+P  +VWG+LL
Sbjct: 409 LDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALL 468

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+CRIH N+++   A+  L  L P   G YVLL+++YA A  W +V  V+ ++E++G++K
Sbjct: 469 GACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKK 528

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
           +PG S  E+  ++++F   D  HPQ + ++  L  L   ++E GY P+ +  L+D++ E+
Sbjct: 529 LPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEED 588

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE  +  HSEKLA+AF LINT+ G  IRIT NLR C DCH   K IS  A +EI+++DVN
Sbjct: 589 KEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVN 648

Query: 647 RFHHFR 652
           R H+ +
Sbjct: 649 RIHYMK 654


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/529 (37%), Positives = 323/529 (61%), Gaps = 8/529 (1%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  +F  T    +++WN + R  +++      + LY+ M     GI  + +T+ +VL AC
Sbjct: 20  AHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDM--FLCGISPNSYTFGFVLNAC 77

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
               C    L  G+E+H+ +++ G +    ++  LI +YA  GC+ YA  +F +M   + 
Sbjct: 78  ----CKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDS 133

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
            SWS M++ Y++NG A E L+L REM  ++ ++  ++ T+ SV+  C  L  L+ GK +H
Sbjct: 134 ASWSTMVSGYSQNGQAVETLKLLREM--QAENVSSDAFTLASVVGVCGDLGVLDLGKWVH 191

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
            YI + G+   + + +ALV MY++CG L+    VF  M +RDV +W+ +I+ Y +HG+  
Sbjct: 192 SYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDE 251

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           KA+Q+F  M    + P+ ++F SVL A SH+GLVE+G  +FE+M  E+ I P ++HY CM
Sbjct: 252 KALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCM 311

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDL  RA  +  A K I+ + IEP   +W +LLG+C+ H    L E  S+++ +L+P++ 
Sbjct: 312 VDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSP 371

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
            NYV +++VYA+   W  V +V+ L++ +  +K  G S IE+   ++ F+  +E HP+ E
Sbjct: 372 ENYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKRE 431

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           +++ +L  ++ ++K+ G+V  T  VL+D+D EEKE  +  HSE+LA+A+GL++T  G  I
Sbjct: 432 KIYGMLHQMARKLKQVGHVASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPI 491

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           RI KNLR C DCH   K IS+  N+EI++RD   FHHFR   CSC DYW
Sbjct: 492 RIVKNLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 123/243 (50%), Gaps = 4/243 (1%)

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G V YA  +FS     N+  W+ +I  Y+ +     A+ L+++M +    + PNS T   
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCG--ISPNSYTFGF 72

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           VL AC  L  L +G+ +H  I++ GLD   P+++ L+ +YA CG ++    +FD M + D
Sbjct: 73  VLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPD 132

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
             SW++++S Y  +G   + +++ +EM    VS    +  SV+G C   G+++ GK +  
Sbjct: 133 SASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHS 192

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
            + KE  ++  V     +V +  +   L+ A K+ + +  E     W  ++    IH + 
Sbjct: 193 YIDKEG-VKIDVVLGTALVGMYSKCGSLDNALKVFQGMA-ERDVTTWSIMIAGYAIHGHD 250

Query: 476 ELA 478
           E A
Sbjct: 251 EKA 253



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 150/326 (46%), Gaps = 17/326 (5%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P  +T+  +L +C     L +   +HS +   G D +  L+  LI +Y+    +D A  
Sbjct: 64  SPNSYTFGFVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACV 123

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FD+        W+ +    +  G+  E L+L R M      + SD FT      A V  
Sbjct: 124 MFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQ--AENVSSDAFTL-----ASVVG 176

Query: 197 SCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
            CG   +L  GK +H+ + + G    V + T L+ MY++ G +  A  VF  MA ++V +
Sbjct: 177 VCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTT 236

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           WS MIA YA +G   +AL+LF    M+   + PN VT  SVL A +    +E+G  I   
Sbjct: 237 WSIMIAGYAIHGHDEKALQLFDA--MKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFET 294

Query: 316 ILRRGLDSILPVV---SALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGY 371
           +       I P +     +V ++ R G +         M  + +VV W +L+ +   HGY
Sbjct: 295 MWTE--YKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGY 352

Query: 372 GGKAIQIFKEMI-YHGVSPSPISFVS 396
            G    I ++++     SP    FVS
Sbjct: 353 KGLGEHISRKILKLDPSSPENYVFVS 378


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/530 (38%), Positives = 325/530 (61%), Gaps = 10/530 (1%)

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF +    T+   N + RA +L+    E   L+R +        ++  + ++ LK C+ S
Sbjct: 68  VFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRALR-RNISFPANPLSSSFALKCCIKS 126

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L  G +IH  +   G+     +MTTL+D+Y+       A  VF ++  ++ VSW
Sbjct: 127 G----DLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSW 182

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLC--PNSVTMVSVLQACAALAALEQGKMIHG 314
           + +I+CY RN    + L LF +M  +  D C  P++VT +  LQACA L AL+ GK +H 
Sbjct: 183 NVLISCYLRNKRTRDVLVLFDKMKNDV-DRCVKPDNVTCLLALQACANLGALDFGKQVHD 241

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
           +I   GL   L + + LV+MY+RCG ++    VF+ M +R+VVSW ++IS   ++G+G +
Sbjct: 242 FIDENGLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKE 301

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK-EHMIRPSVEHYACM 433
           AI+ F EM+  G+SP   +   +L ACSH+GLV+EG M F+ MR  E  I+P++ HY C+
Sbjct: 302 AIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCI 361

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLLGRA  L++A  +I+ + ++P   +W +LLG+CR+H NVEL ER    L E +   A
Sbjct: 362 VDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEA 421

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           G+YVLL + Y++   W++V  ++ L++ + +Q  PG S IE++  ++ F+  D  HP+ E
Sbjct: 422 GDYVLLLNTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKE 481

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG-HSEKLAVAFGLINTSKGET 612
           +++ +L  ++ ++K  GYV +    L++LD+EE++   L  HSEKLA+AFG++ T    T
Sbjct: 482 EIYKMLAEINQQLKIAGYVAEITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETT 541

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IR+TKNLR C DCH+F KF+S   ++ ++VRD +RFHHF+ G CSC D+W
Sbjct: 542 IRVTKNLRTCVDCHNFAKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 178/377 (47%), Gaps = 22/377 (5%)

Query: 55  LIQSLCKQGNLRQALDV-LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           L Q+ C+   L +AL   +S   NP   ++ L    C     L   L +H  +  +GF  
Sbjct: 89  LSQTPCEGFRLFRALRRNISFPANPLSSSFALK--CCIKSGDLLGGLQIHGKIFSDGFLS 146

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM- 172
           D  L+T L+++YS  ++  DA  VFD+  +R    WN L        R  +VL L+ +M 
Sbjct: 147 DSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLVLFDKMK 206

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
           N     ++ D  T    L+AC         L  GK++H  +  +G +G +++  TL+ MY
Sbjct: 207 NDVDRCVKPDNVTCLLALQACA----NLGALDFGKQVHDFIDENGLSGALNLSNTLVSMY 262

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           +R G +  A  VF++M  +NVVSW+AMI+  A NG   EA+E F EM+     + P   T
Sbjct: 263 SRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEML--KFGISPEEQT 320

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALVTMYARCGKLELGQCVFD 349
           +  +L AC+    +++G M     +R G   I P +     +V +  R   L+    +  
Sbjct: 321 LTGLLSACSHSGLVDEGMMFFDR-MRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIK 379

Query: 350 HMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV---SPSPISFVSVLGACSHAG 405
            M+ K D   W +L+ +  VHG     +++ + +I H +   +     +V +L   S  G
Sbjct: 380 SMEMKPDSTIWRTLLGACRVHG----NVELGERVIAHLIEFKAEEAGDYVLLLNTYSSVG 435

Query: 406 LVEEGKMLFESMRKEHM 422
             E+   L   M+K+ +
Sbjct: 436 KWEKVTELRSLMKKKRI 452


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/587 (36%), Positives = 349/587 (59%), Gaps = 31/587 (5%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P+ +  T+ + L+  +  N+L     +H+ +  +    +  +VT+LI+      S+D A 
Sbjct: 35  PSRSPETHFIPLIHAS--NTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYAL 92

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            +F       ++V+NAL R L    R E  +  +  M      IR DR T  +VLK+ VA
Sbjct: 93  SIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLM--LRLSIRPDRLTLPFVLKS-VA 149

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           +     L   G+ +H  V++ G      +  +L+DMY + G + +   +F +   +N   
Sbjct: 150 ALVDVGL---GRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKA- 205

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
                                 E I+  + + PN +T+VS L AC  + AL+ G+ IH Y
Sbjct: 206 ----------------------ESILLWNGVRPNDLTVVSALLACTKIGALQVGERIHNY 243

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           +   G      + +ALV MYA+CG ++    VF     +D+++W+ +I  + +HG   +A
Sbjct: 244 LSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQA 303

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           +Q F +M   G++P  + F+++L ACSH+G V++G   FESMR ++ I P+++HY  +VD
Sbjct: 304 LQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVD 363

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495
           LLGRA +L+EA   I+ + I P   +WG+L  +CR H N+E+AE  +++L +LEP + G+
Sbjct: 364 LLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGS 423

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           YV L++VYAA   W++V+RV+ L++ RG++K PG S IEV+ +++SFV+ D  H + E++
Sbjct: 424 YVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEI 483

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
              L  ++A  K++GY+P+T  VL++++ EEKE  +  HSEKLA+AFGLI+T+ G TIRI
Sbjct: 484 SLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRI 543

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C DCHS  K+ SK + +EI++RD+ RFHHF++G CSCGDYW
Sbjct: 544 VKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 590


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/618 (36%), Positives = 346/618 (55%), Gaps = 44/618 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   ++ +C     L     V+  + D+G + +  +++ L+++Y   +++D A+ +
Sbjct: 233 PNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRL 292

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+     + + NA+       G  +E L +   M    +GIR DR +    + +C    
Sbjct: 293 FDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLM--MDSGIRPDRISMLSAISSC---- 346

Query: 198 CGFSLLKH---GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
              S L++   GK  H  VLR+G+    +I   LIDMY +      A  +F +M+ K VV
Sbjct: 347 ---SQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVV 403

Query: 255 SWSAMIACYARNGMAFEALELFREM-----------------------------IMESHD 285
           +W++++A Y  NG    A E F  M                              M+S +
Sbjct: 404 TWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQE 463

Query: 286 LCPN--SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
            C N   VTM+S+  AC  L AL+  K I+ YI +  +   + + + LV M++RCG  E 
Sbjct: 464 -CVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPES 522

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              +F+ +  RDV +W + I +  + G   +AI++F EMI  G+ P  + F+  L AC H
Sbjct: 523 AMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCH 582

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
            GLV++GK +F SM K H + P   HY CMVDLLGRA  LEEA ++I+D+  EP   +W 
Sbjct: 583 GGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWN 642

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           SLL +CR+  NVE+A  A++++  L P   G+YVLL++VYA+A  W+++ +V+  ++ +G
Sbjct: 643 SLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKG 702

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
           L+K PG S I+++ K + F S DE HP+  ++ A+L  LS    + G+VP    VL D+D
Sbjct: 703 LRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVD 762

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            +EK  ++  HSEKLA+AFGLI+++KG TIRI KNLR+C  CHSF KF SK  N+EI++R
Sbjct: 763 EQEKIFMLSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFASKVYNREIILR 822

Query: 644 DVNRFHHFRNGVCSCGDY 661
           D NRFH  R G CSC D+
Sbjct: 823 DNNRFHFIRQGKCSCSDF 840



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 167/313 (53%), Gaps = 11/313 (3%)

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHF---DSVDDARHVFDKTRRR-TIYVWNALFRALTL 158
           H  LT  G D D   +TKL+         +S+  A+ VF+      T +++N+L R    
Sbjct: 51  HLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYAS 110

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +G  +E + L+ RM    +GI  D++T+ + L  C  S        +G +IH  +++  Y
Sbjct: 111 SGLCKEAILLFIRM--MNSGISPDKYTFPFGLSVCAKSRDK----GNGIQIHGLIIKMDY 164

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
              + +  +L+  YA  G +  A  VF +M+ +NVVSW++MI  YAR   A +A++LF  
Sbjct: 165 AKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFR 224

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M+ +  D+ PNSVTMV V+ ACA L  LE G+ ++ +I   G++    ++SALV MY +C
Sbjct: 225 MVRD-EDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKC 283

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
             +++ + +FD     ++   N++ S+Y   G   +A+ +   M+  G+ P  IS +S +
Sbjct: 284 NAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAI 343

Query: 399 GACSHAGLVEEGK 411
            +CS    +  GK
Sbjct: 344 SSCSQLRNILWGK 356



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 194/438 (44%), Gaps = 46/438 (10%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI+     G  ++A+     +++   +P ++T+   L  C       + + +H  +  
Sbjct: 102 NSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIK 161

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
             + +D F+   L++ Y+    +D AR VFD+   R +  W ++          ++ ++L
Sbjct: 162 MDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDL 221

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           + RM      +R +      V   CV S+C     L+ G++++  +   G      +++ 
Sbjct: 222 FFRM------VRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISA 275

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+DMY +   +  A  +F +    N+   +AM + Y R G+  EAL +    +M    + 
Sbjct: 276 LVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLN--LMMDSGIR 333

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+ ++M+S + +C+ L  +  GK  HGY+LR G +S   + +AL+ MY +C + +    +
Sbjct: 334 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 393

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM------------------------- 382
           FD M  + VV+WNS+++ Y  +G    A + F  M                         
Sbjct: 394 FDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAI 453

Query: 383 -IYH------GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
            ++H       V+   ++ +S+  AC H G ++  K ++  + K   I+  V     +VD
Sbjct: 454 EVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNR-IQLDVRLGTTLVD 512

Query: 436 LLGRANKLEEAAKIIEDL 453
           +  R    E A  I   L
Sbjct: 513 MFSRCGDPESAMSIFNSL 530



 Score = 45.4 bits (106), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 19/181 (10%)

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG---KLELGQCVFDHM 351
           S L+ C  +  L   KM H  + ++GLD  +  ++ LV      G    L   + VF++ 
Sbjct: 36  SSLKNCKTIDEL---KMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENG 92

Query: 352 DKRDV-VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA-----G 405
           +       +NSLI  Y   G   +AI +F  M+  G+SP   +F   L  C+ +     G
Sbjct: 93  ESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNG 152

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           +   G ++     K+  ++ S+ H+           +L+ A K+ +++  E     W S+
Sbjct: 153 IQIHGLIIKMDYAKDLFVQNSLVHF------YAECGELDCARKVFDEMS-ERNVVSWTSM 205

Query: 466 L 466
           +
Sbjct: 206 I 206


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/642 (37%), Positives = 347/642 (54%), Gaps = 21/642 (3%)

Query: 28  KPSSVCCCVSLN---SSTTPTSL--SSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHT 82
           +P+S    +SL    S  T T+L   S        +L    N+R+     SI+PN    T
Sbjct: 57  RPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRD----SIQPN--DFT 110

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           +     +     S      VH+     G   D F+     ++YS     ++AR +FD+  
Sbjct: 111 FPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMP 170

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
            R I  WNA      L GR ++ L  +      G     +  T+   L AC     G S 
Sbjct: 171 ERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGW--EPNLITFCAFLNACA----GASY 224

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L+ G+++H  VL+ G+   V +   LID Y +   V  +  +FS ++  N VSW +MI  
Sbjct: 225 LRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVS 284

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y +N    +A  +F     E  +  P    + SVL ACA L+ LE GK +H   ++  + 
Sbjct: 285 YVQNDEEEKACLVFLRARKEGIE--PTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVV 342

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             + V SALV MY +CG +E  +  FD M +R++V+WN++I  Y   G    A+ +F EM
Sbjct: 343 GNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEM 402

Query: 383 I--YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
               H V+P+ ++FV VL ACS AG V  G  +FESMR  + I P  EHYAC+VDLLGRA
Sbjct: 403 TCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRA 462

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
             +E+A + I+ + I P   VWG+LLG+ ++    EL + A+  LFEL+P ++GN+VLL+
Sbjct: 463 GMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLS 522

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           +++AAA  W+E   V++ ++  G++K  G S I     ++ F + D  H +  ++ A+L 
Sbjct: 523 NMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLA 582

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            L  EM+  GY+P T   L+DL+ EEK   V  HSEK+A+AFGLI+   G  IRITKNLR
Sbjct: 583 KLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLR 642

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCHS  KFIS    +EI+VRD N FH FR+  CSC DYW
Sbjct: 643 ICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 684



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 172/352 (48%), Gaps = 10/352 (2%)

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           F+   L+N+YS  D  + A+ +   T  R++  W AL       GR    L  +  M   
Sbjct: 43  FIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMR-- 100

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
              I+ + FT+    KA  + S    L+  GK++HA  ++ G    V +  +  DMY++ 
Sbjct: 101 RDSIQPNDFTFPCAFKA--SGSLRSPLV--GKQVHALAVKAGQISDVFVGCSAFDMYSKA 156

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G    A  +F +M  +N+ +W+A ++     G   +AL  F E   E  +  PN +T  +
Sbjct: 157 GLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWE--PNLITFCA 214

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
            L ACA  + L  G+ +HG++L+ G ++ + V + L+  Y +C ++   + +F  + K +
Sbjct: 215 FLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPN 274

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
            VSW S+I SY  +    KA  +F      G+ P+     SVL AC+   ++E GK +  
Sbjct: 275 DVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSV-H 333

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           ++  +  +  ++   + +VD+ G+   +E+A +  +++  E     W +++G
Sbjct: 334 TLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP-ERNLVTWNAMIG 384



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 3/225 (1%)

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGI-VHIMTTLIDMYARFGCVMYAGFVFSQM 248
           L + V S+      + G+  HA +++   N +   I   L++MY++      A  + S  
Sbjct: 9   LASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLT 68

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             ++VV+W+A+IA   +NG    AL  F  M  +S  + PN  T     +A  +L +   
Sbjct: 69  PNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDS--IQPNDFTFPCAFKASGSLRSPLV 126

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           GK +H   ++ G  S + V  +   MY++ G  E  + +FD M +R++ +WN+ +S+  +
Sbjct: 127 GKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVL 186

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
            G    A+  F E  + G  P+ I+F + L AC+ A  +  G+ L
Sbjct: 187 EGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQL 231


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/544 (39%), Positives = 332/544 (61%), Gaps = 8/544 (1%)

Query: 114 DPFLVT-KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           DP L+  KLI   +   +V  A  +F       I+  NA  +AL         ++ +   
Sbjct: 22  DPNLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQ 81

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
             +      D FT+T VLKAC     G + + +G++IHA V + G+   + +  +LIDMY
Sbjct: 82  VSSPNAPNPDEFTFTSVLKACA----GLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMY 137

Query: 233 ARFGCVMYAGFVFSQMAVK--NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
            + G ++ A  +F +M V+  NVV W+AMIA YA+N    +A+E+FR M+ +   + PN 
Sbjct: 138 FKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFR-MMQQFGGVVPND 196

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           VT+VSVL ACA L AL+ GK I G+I RR +   L + +AL  MYA+CG +   + VF+ 
Sbjct: 197 VTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNK 256

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M++RDV+SW+ +I    ++G+  +A   F EM+  G  P+ + F+ +L AC+HAGLV++G
Sbjct: 257 MEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKG 316

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
              F +M KE+ + P VEHY C+VDLL RA +L++A  +I  + ++P   +WG+LLG CR
Sbjct: 317 LNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCR 376

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
           I+ +    +R  + + EL+  ++G+YV LA+VY++    D+  + +  +   G+ K PG 
Sbjct: 377 IYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGC 436

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S IEV   ++ F   D  HP+  ++++++  L  +MK  GY P+T +V++ +D EEKE  
Sbjct: 437 SWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKTDLVVHSIDEEEKEDA 496

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +  HSEKLA+AFGLI+TS+G TIR+ KNLR+C DCH   K IS    +EI+VRD +RFHH
Sbjct: 497 LSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHH 556

Query: 651 FRNG 654
           F++G
Sbjct: 557 FKDG 560



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 146/314 (46%), Gaps = 14/314 (4%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           PNP + T+  +L +C     + +   +H+ +T  GF+ + F+   LI++Y     +  AR
Sbjct: 88  PNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLAR 147

Query: 136 HVFDK--TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           H+FD+   R R +  WNA+        +  + +E++R M   G G+  +  T   VL AC
Sbjct: 148 HLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFG-GVVPNDVTLVSVLPAC 206

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                    L  GK I   + R      + +   L DMYA+ GC+  A  VF++M  ++V
Sbjct: 207 AH----LGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDV 262

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           +SWS +I   A  G A EA   F EM+       PN V  + +L AC     +++G    
Sbjct: 263 ISWSIIICGLAMYGHADEAFGCFYEMLDCGEK--PNDVVFMGLLTACTHAGLVKKGLNCF 320

Query: 314 GYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISS---YGV 368
             + +  G+   +     +V + +R G+L+  + +   M  K +V+ W +L+     Y  
Sbjct: 321 NTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRD 380

Query: 369 HGYGGKAIQIFKEM 382
            G G + +Q   E+
Sbjct: 381 SGRGQRVVQHILEL 394


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/612 (35%), Positives = 350/612 (57%), Gaps = 28/612 (4%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           +++   ++G + +A  +    P     ++ +++      + + DA      L D   ++D
Sbjct: 120 MVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDA----KKLFDMIPEKD 175

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             +VT +I  Y     +D+AR +FD+ + R ++ W  +       GR +   +L+  M  
Sbjct: 176 VVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMP- 234

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
                  +  ++T +L     S      +K   E+  ++        V  +    +M  +
Sbjct: 235 -----ERNEVSWTAMLMGYTQSG----RMKEAFELFEAM-------PVKWIVACNEMILQ 278

Query: 235 FGC---VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           FG    +  A  +F  M  ++  +W+AMI  + R G+  EAL LF  M  E   L  N  
Sbjct: 279 FGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVAL--NFP 336

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           +M+SVL  CA+LA+L+ G+ +H  ++R   D  L V S L+TMY +CG L   + +F+  
Sbjct: 337 SMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRF 396

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             +DVV WNS+I+ Y  HG G +A+ +F +M   GV P  ++F+ VL ACS++G V+EG 
Sbjct: 397 LFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGF 456

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
            +FE+M+  + + P +EHYACMVDLLGRA +++EA +++E + +EP   VWG+LLG+CR 
Sbjct: 457 EIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRN 516

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H  ++LAE A ++L +LEP NAG YVLL+ +YA    W +V+ +++ +  R + K PG S
Sbjct: 517 HMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVI-KFPGCS 575

Query: 532 RIEVKRKMYSFVSVD-EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
            IEV++K++ F   D + HP+   +  +L  LS  ++E GY P    VL+D+D EEK   
Sbjct: 576 WIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTHS 635

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +  HSE+LAVA+GL+   +G  IR+ KNLR+C DCHS  K I+K   +EI++RD NRFHH
Sbjct: 636 LGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHH 695

Query: 651 FRNGVCSCGDYW 662
           F++G CSC D+W
Sbjct: 696 FKDGSCSCKDFW 707



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 150/352 (42%), Gaps = 71/352 (20%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTR--RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           T  I+ Y     + +AR VFD T   +RTI  WNA+  A   + +  + L L+ +M    
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRN 82

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
           T                                        +NG       +I  Y + G
Sbjct: 83  T--------------------------------------VSFNG-------MISGYVKNG 97

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            V  A  VF  M  +NVVSW++M+  Y + GM  EA +LF EM         N V+   +
Sbjct: 98  MVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRR------NVVSWTVM 151

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           +      + ++  K +   I  +     + VV+ ++  Y + G+L+  + +FD M  R+V
Sbjct: 152 IGGLLKESRIDDAKKLFDMIPEKD----VVVVTNMIGGYCQVGRLDEARELFDEMKVRNV 207

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
            +W +++S Y  +G    A ++F+ M       + +S+ ++L   + +G ++E   LFE+
Sbjct: 208 FTWTTMVSGYAKNGRVDVARKLFEVM----PERNEVSWTAMLMGYTQSGRMKEAFELFEA 263

Query: 417 MRKEHMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           M  + ++       AC  M+   G A ++  A  + E ++ E     W +++
Sbjct: 264 MPVKWIV-------ACNEMILQFGLAGEMHRARMMFEGMK-ERDEGTWNAMI 307



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 101/233 (43%), Gaps = 21/233 (9%)

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           +A+V+ Y    K      +FD M +R+ VS+N +IS Y  +G    A ++F  M    V 
Sbjct: 56  NAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNV- 114

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
              +S+ S++      G+VEE + LF  M + +++      +  M+  L + +++++A K
Sbjct: 115 ---VSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVV-----SWTVMIGGLLKESRIDDAKK 166

Query: 449 IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
           +  D+  E    V  +++G    +C V   + A +   E++  N   +  +   YA    
Sbjct: 167 LF-DMIPEKDVVVVTNMIGG---YCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGR 222

Query: 509 WDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
            D  +++         + +P R+ +     +  +         FE   A+ + 
Sbjct: 223 VDVARKL--------FEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVK 267


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/589 (35%), Positives = 345/589 (58%), Gaps = 15/589 (2%)

Query: 78   PTQHTYELLLLSCTHHNSLSD----ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
            P Q T   +L +C+   SL      A  +H+     G   D F+ T LI+VYS    +++
Sbjct: 1005 PDQFTVASVLRACS---SLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEE 1061

Query: 134  ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
            A  +F       +  WNA+     ++G   + L LY  M  +G   R+++ T     KA 
Sbjct: 1062 AEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGE--RANQITLANAAKA- 1118

Query: 194  VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
               + G   LK GK+I A V++ G+N  + +++ ++DMY + G +  A  +F+++   + 
Sbjct: 1119 ---AGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDD 1175

Query: 254  VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
            V+W+ MI+    NG    AL  +  M +    + P+  T  ++++AC+ L ALEQG+ IH
Sbjct: 1176 VAWTTMISGCVENGQEEHALFTYHHMRLSK--VQPDEYTFATLVKACSLLTALEQGRQIH 1233

Query: 314  GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
               ++        V+++LV MYA+CG +E  + +F   +   + SWN++I     HG   
Sbjct: 1234 ANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAE 1293

Query: 374  KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
            +A+Q F+EM   GV+P  ++F+ VL ACSH+GLV E    F SM+K + I P +EHY+C+
Sbjct: 1294 EALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCL 1353

Query: 434  VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
            VD L RA ++ EA K+I  +  E    ++ +LL +CR+  + E  +R +++L  LEP+++
Sbjct: 1354 VDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDS 1413

Query: 494  GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
              YVLL++VYAAA+ W+ V   + ++    ++K PG S +++K K++ FV+ D  H + +
Sbjct: 1414 AAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETD 1473

Query: 554  QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
             ++  +  +   ++E+GY+P T   L D++ E+KE  +  HSEKLA+A+GL+ T    T+
Sbjct: 1474 VIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTL 1533

Query: 614  RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            R+ KNLR+C DCH+  K+ISK   +E+++RD NRFHHFR+GVCSCGDYW
Sbjct: 1534 RVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 190/398 (47%), Gaps = 11/398 (2%)

Query: 82   TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
            T+ ++L      N L     +H  +  +G DQ   +   LIN+Y    SV  AR VF + 
Sbjct: 908  TFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQM 967

Query: 142  RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
                +  WN +     L+G  E  + ++  ++    G+  D+FT   VL+AC +   G  
Sbjct: 968  NEVDLVSWNTMISGCALSGLEECSVGMF--VDLLRGGLLPDQFTVASVLRACSSLGGGCH 1025

Query: 202  LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L     +IHA  ++ G      + TTLID+Y++ G +  A F+F      ++ SW+AM+ 
Sbjct: 1026 L---ATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMH 1082

Query: 262  CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
             Y  +G   +AL L+  ++M+      N +T+ +  +A   L  L+QGK I   +++RG 
Sbjct: 1083 GYIVSGDFPKALRLY--ILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGF 1140

Query: 322  DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
            +  L V+S ++ MY +CG++E  + +F+ +   D V+W ++IS    +G    A+  +  
Sbjct: 1141 NLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHH 1200

Query: 382  MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH-MIRPSVEHYACMVDLLGRA 440
            M    V P   +F +++ ACS    +E+G+ +  +  K +    P V     +VD+  + 
Sbjct: 1201 MRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFV--MTSLVDMYAKC 1258

Query: 441  NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
              +E+A  + +          W +++     H N E A
Sbjct: 1259 GNIEDARGLFKRTNTSRIAS-WNAMIVGLAQHGNAEEA 1295



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 154/327 (47%), Gaps = 31/327 (9%)

Query: 79   TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
            T+HT   +   C    S S A ++H +    G   D F+   L+N+Y+ F  + +AR +F
Sbjct: 726  TRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLF 785

Query: 139  DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
            D    R + +WN + +A    G   E L L+   N TG  +R D  T            C
Sbjct: 786  DGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTG--LRPDDVTL-----------C 832

Query: 199  GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
              + +   K+              +++   +     +G  ++           +V++W+ 
Sbjct: 833  TLARVVKSKQ--------------NVLEWQLKQLKAYGTKLF--MYDDDDDGSDVIAWNK 876

Query: 259  MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
             ++ + + G  +EA++ F +MI  S   C + +T V +L   A L  LE GK IHG ++R
Sbjct: 877  TLSWFLQRGETWEAVDCFVDMI-NSRVAC-DGLTFVVMLSVVAGLNCLELGKQIHGIVVR 934

Query: 319  RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
             GLD ++ V + L+ MY + G +   + VF  M++ D+VSWN++IS   + G    ++ +
Sbjct: 935  SGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGM 994

Query: 379  FKEMIYHGVSPSPISFVSVLGACSHAG 405
            F +++  G+ P   +  SVL ACS  G
Sbjct: 995  FVDLLRGGLLPDQFTVASVLRACSSLG 1021



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 160/327 (48%), Gaps = 15/327 (4%)

Query: 146  IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
            +  WN         G   E ++ +  M    + +  D  T+  +L      +C    L+ 
Sbjct: 871  VIAWNKTLSWFLQRGETWEAVDCFVDM--INSRVACDGLTFVVMLSVVAGLNC----LEL 924

Query: 206  GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
            GK+IH  V+R G + +V +   LI+MY + G V  A  VF QM   ++VSW+ MI+  A 
Sbjct: 925  GKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCAL 984

Query: 266  NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL-AALEQGKMIHGYILRRG--LD 322
            +G+   ++ +F +++     L P+  T+ SVL+AC++L         IH   ++ G  LD
Sbjct: 985  SGLEECSVGMFVDLLRGG--LLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLD 1042

Query: 323  SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
            S   V + L+ +Y++ GK+E  + +F + D  D+ SWN+++  Y V G   KA++++  M
Sbjct: 1043 SF--VSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILM 1100

Query: 383  IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
               G   + I+  +   A      +++GK + +++  +      +   + ++D+  +  +
Sbjct: 1101 QESGERANQITLANAAKAAGGLVGLKQGKQI-QAVVVKRGFNLDLFVISGVLDMYLKCGE 1159

Query: 443  LEEAAKIIEDLRIEPGPKVWGSLLGSC 469
            +E A +I  ++   P    W +++  C
Sbjct: 1160 MESARRIFNEIP-SPDDVAWTTMISGC 1185



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 138/315 (43%), Gaps = 37/315 (11%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT--RRRTIYVWNALFRALTLA 159
            H+ +  +G   D FL   LI +YS   S+  AR +FD T    R +  WNA+  A    
Sbjct: 648 AHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADK 707

Query: 160 GR-GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            R G  +  L RR     + + + R T   V K C+ S+   +     + +H   ++ G 
Sbjct: 708 ARDGFHLFRLLRR-----SFVSATRHTLAPVFKMCLLSASPSA----AESLHGYAVKIGL 758

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
              V +   L+++YA+FG +  A  +F  M +++VV W+ M+  Y   G+ +EAL LF E
Sbjct: 759 QWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSE 818

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
                  L P+ VT+      C     ++  + +  + L++     L      + MY   
Sbjct: 819 F--NRTGLRPDDVTL------CTLARVVKSKQNVLEWQLKQ-----LKAYGTKLFMYDD- 864

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
                        D  DV++WN  +S +   G   +A+  F +MI   V+   ++FV +L
Sbjct: 865 -----------DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVML 913

Query: 399 GACSHAGLVEEGKML 413
              +    +E GK +
Sbjct: 914 SVVAGLNCLELGKQI 928



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 21/232 (9%)

Query: 200 FSLLKH---------GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM-- 248
           FS+L+H         GK  HA +L  G++    +   LI MY++ G +  A  +F     
Sbjct: 630 FSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPD 689

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             +++V+W+A+++ +A    A +   LFR  ++    +     T+  V + C   A+   
Sbjct: 690 TSRDLVTWNAILSAHADK--ARDGFHLFR--LLRRSFVSATRHTLAPVFKMCLLSASPSA 745

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
            + +HGY ++ GL   + V  ALV +YA+ G++   + +FD M  RDVV WN ++ +Y  
Sbjct: 746 AESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVD 805

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
            G   +A+ +F E    G+ P  ++       C+ A +V+  + + E   K+
Sbjct: 806 TGLEYEALLLFSEFNRTGLRPDDVTL------CTLARVVKSKQNVLEWQLKQ 851


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/597 (37%), Positives = 333/597 (55%), Gaps = 70/597 (11%)

Query: 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
           DS+  AR +F   R   ++++N L R L+ +      L+L+  M      +  D F++ +
Sbjct: 53  DSLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVAL-PDSFSFAF 111

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC----------- 237
           +LKA  A++C    L +G ++H   + +G +  + + TTLI MYA   C           
Sbjct: 112 LLKA--AANC--RALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEM 167

Query: 238 ----------------------------------------VMYAGF-----------VFS 246
                                                   +M AG+           VF 
Sbjct: 168 IEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFM 227

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
           +M +K+ VSWS MI  +A NG   +A   FRE+  E   + PN V++  VL ACA   A 
Sbjct: 228 KMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREG--MRPNEVSLTGVLSACAQAGAF 285

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
           E G+++HG++ + G   I+ V +AL+  Y++CG L++ + VFD+M +R  VSW ++I+  
Sbjct: 286 EFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGM 345

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
            +HGYG +AI++F EM    + P  I+F+S+L ACSHAGLV+ G   F  M   + I P 
Sbjct: 346 AMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPV 405

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF 486
           +EHY CMVDL GRA KL++A   +  + I P   VW +LLG+C IH N+ LA +  ++L 
Sbjct: 406 IEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLS 465

Query: 487 ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD 546
           EL+P N+G++VLL+++YA A  W +V  ++R +  + L+K PG S IEV R +YSFV+ +
Sbjct: 466 ELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGE 525

Query: 547 EFHPQFEQLHALLINLSAEMK-EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLI 605
           + +    + H  L  + + ++ E GYVP+   VL+D++ EEKE  V  HSEKLAVAFG+ 
Sbjct: 526 KQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMA 585

Query: 606 NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              +G  IR+ KNLR+C DCH+  K ISK    EI+VRD +RFH F +G CSC DYW
Sbjct: 586 KLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 161/372 (43%), Gaps = 78/372 (20%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   ++  LL +  +  +L++ L +H      G D   F+ T LI++Y+    +  AR V
Sbjct: 104 PDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKV 163

Query: 138 FDKTRRRTIYVWNAL----------------FRAL---------------TLAGRGEEVL 166
           FD+     I  WNA+                FR +               T AG  +   
Sbjct: 164 FDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAR 223

Query: 167 ELYRRM-----------------NGTGT------------GIRSDRFTYTYVLKACVASS 197
           E++ +M                 NG               G+R +  + T VL AC  + 
Sbjct: 224 EVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAG 283

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                 + G+ +H  V + G+  I+ +   LID Y++ G +  A  VF  M  ++ VSW+
Sbjct: 284 A----FEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWT 339

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-----KMI 312
           AMIA  A +G   EA+ LF E  ME  ++ P+S+T +S+L AC+    ++ G     +M+
Sbjct: 340 AMIAGMAMHGYGEEAIRLFNE--MEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMV 397

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM--DKRDVVSWNSLISSYGVHG 370
           + Y    G++ ++     +V +Y R GKL+        M     D+V W +L+ +  +HG
Sbjct: 398 NTY----GIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIV-WRTLLGACSIHG 452

Query: 371 YGGKAIQIFKEM 382
               A Q+ +++
Sbjct: 453 NLYLAGQVKRQL 464



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 108/224 (48%), Gaps = 21/224 (9%)

Query: 203 LKHGKEIHASVLRHGYNG--------IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
           L+  K+I A + +   N         ++H   TL D       + YA  +F  +   +V 
Sbjct: 18  LRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPD------SLHYARRLFLDIRNPDVF 71

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
            ++ +I   + +     AL+LF EM  +S  L P+S +   +L+A A   AL  G  +H 
Sbjct: 72  MYNTLIRGLSDSDTPSNALQLFVEMRRKSVAL-PDSFSFAFLLKAAANCRALTNGLQLHC 130

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS-YGVHGYGG 373
             +  GLDS L V + L++MYA C  L   + VFD M + ++V+WN+++++ +   G   
Sbjct: 131 LAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGV-K 189

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
            A Q+F+ M    ++   I    +L   + AG ++  + +F  M
Sbjct: 190 DAEQVFRCMPIRNLTSWNI----MLAGYTKAGELQLAREVFMKM 229


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 336/557 (60%), Gaps = 9/557 (1%)

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
           + DNGF+ D ++  +++ ++     + DAR +FD+   R +  WN +   L   G   E 
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
             L+  M    +   S  FT+  +++A    S G  L+  G+++HA  L+ G    + + 
Sbjct: 61  FRLFLNMWEEFSDAGS--FTFAVMIRA----SAGLELISIGRQLHACTLKMGIGDDIFVS 114

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
             LIDMY++ G +  A FVF +M  K  V W+ +IA YA +G + EAL+++ EM      
Sbjct: 115 CALIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEM--RDSG 172

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           +  +  T   +++ CA LA++E  K  H  ++R G  S +   +ALV  Y++ G++E  +
Sbjct: 173 VKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDAR 232

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VFD M  ++V+SWN+LI  YG HG G +A+++F++MI   ++P+ I+F++VL ACSH+G
Sbjct: 233 HVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSG 292

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           L E G  +F+SM +++ I+P   HYACM++L+GR   L+EA  +I     +P   +W +L
Sbjct: 293 LSERGWEIFQSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAAL 352

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           L +CR++ N EL + A+++L+ +EP    NY++L ++Y +A    E   V   L+ +GL+
Sbjct: 353 LTACRVNENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLR 412

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
             P  S IEVKR+ + F+S D  HPQ ++++  +  L  E+ + GYVP  K +L D+D E
Sbjct: 413 MRPVCSWIEVKRRPHVFLSGDNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVD-E 471

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
           ++ER+ L HSEKLA+AFGLI+T     ++I +  R+C DCH   K I++   +EI++RD 
Sbjct: 472 QEERVRLYHSEKLAIAFGLISTPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDA 531

Query: 646 NRFHHFRNGVCSCGDYW 662
            RFHHF++G CSC DYW
Sbjct: 532 GRFHHFKHGHCSCEDYW 548



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 6/134 (4%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+ +++  C    S+  A   H+ L  +GF  D    T L++ YS +  ++DARHVFDK 
Sbjct: 179 TFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKM 238

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             + +  WNAL       GRG E +EL+ +M      +  +  T+  VL AC  S     
Sbjct: 239 ASKNVISWNALIGGYGNHGRGSEAVELFEQM--IQERMNPNHITFLAVLSACSHS----G 292

Query: 202 LLKHGKEIHASVLR 215
           L + G EI  S+ R
Sbjct: 293 LSERGWEIFQSMGR 306


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/639 (35%), Positives = 354/639 (55%), Gaps = 40/639 (6%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
           I +LC +GNLR+A     +        +   + SCT   SL     +H  L  +GF  D 
Sbjct: 20  IATLCSKGNLREAFQRFRLNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDK 79

Query: 116 FLVTKLINVYSHFDSVD-------------------------------DARHVFDKTRRR 144
           F+   L+++YS                                     +AR VFD+   R
Sbjct: 80  FICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDR 139

Query: 145 TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK 204
            +  WNA+   L      EE L L+R M+G G     D +T    L +  + S G   + 
Sbjct: 140 KLTTWNAMIAGLIQFEFNEEGLSLFREMHGLG--FSPDEYT----LGSVFSGSAGLRSVS 193

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
            G++IH   +++G    + + ++L  MY R G +     V   M V+N+V+W+ +I   A
Sbjct: 194 IGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNA 253

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           +NG     L L++  +M+     PN +T V+VL +C+ LA   QG+ IH   ++ G  S+
Sbjct: 254 QNGCPETVLYLYK--MMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSV 311

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + VVS+L++MY++CG L      F   +  D V W+S+IS+YG HG G +AI++F  M  
Sbjct: 312 VAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAE 371

Query: 385 H-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
              +  + ++F+++L ACSH+GL ++G  LF+ M +++  +P ++HY C+VDLLGRA  L
Sbjct: 372 QTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCL 431

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
           ++A  II  + I+    +W +LL +C IH N E+A+R  K + +++P ++  YVLLA+V+
Sbjct: 432 DQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVH 491

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           A+A  W +V  V++ +  + ++K  G S  E K +++ F   D    + +++++ L  L+
Sbjct: 492 ASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELT 551

Query: 564 AEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCE 623
            EMK KGY P T  VL+D+D EEKE  ++ HSEKLAVAF L+   +G  IRI KNLR+C 
Sbjct: 552 LEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCS 611

Query: 624 DCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           DCH   K+IS   N+EI +RD +RFHHF NG CSCGDYW
Sbjct: 612 DCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/645 (34%), Positives = 355/645 (55%), Gaps = 53/645 (8%)

Query: 53  NELIQSLCKQGNLRQALD-VLSIEPNPTQ---HTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++ +L + G +R+ALD V+ ++    +    TY   L +C   +SL     +H+ +  
Sbjct: 239 NMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIR 298

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           N    DP++ + L+ +Y+      +A+ VF+    R    W  L       G   E +EL
Sbjct: 299 NLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVEL 358

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M      +  D+F    ++  C    C    L  G+++H+  L+ G    V +  +L
Sbjct: 359 FNQMRAELMTL--DQFALATLISGC----CSRMDLCLGRQLHSLCLKSGQIQAVVVSNSL 412

Query: 229 IDMYAR-------------------------------FGCVMYAGFVFSQMAVKNVVSWS 257
           I MYA+                                G +  A   F  M+ KNV++W+
Sbjct: 413 ISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWN 472

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AM+  Y ++G   + L ++  M+ E  D+ P+ VT V++ + CA L A + G  I G  +
Sbjct: 473 AMLGAYIQHGAEEDGLRMYNVMLSEK-DVRPDWVTYVTLFKGCADLGANKLGDQIIGRTV 531

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + GL     V +A++TMY++CG++   + VFD ++ +D+VSWN++I+ Y  HG G +AI+
Sbjct: 532 KVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIE 591

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           IF +++  G  P  IS+V+VL  CSH+GLV+EGK  F+ M++ H I P +EH++CMVDLL
Sbjct: 592 IFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLL 651

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
           GRA  L EA  +I+++ ++P  +VWG+LL +C+IH N ELAE A+K +FEL+  ++G+Y+
Sbjct: 652 GRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYM 711

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           L+A +YA A   D+  ++++L+  +G++K PG S +EV  K++ F + D  HPQ   +  
Sbjct: 712 LMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRK 771

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L  L  ++   GYV             +  R  + HSEKLAVAFGL++      I I K
Sbjct: 772 KLDELMEKIARLGYVRT-----------DSPRSEIHHSEKLAVAFGLMSLPAWMPIHIMK 820

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCH+  K IS    +E ++RD  RFHHF  G CSCGDYW
Sbjct: 821 NLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 160/303 (52%), Gaps = 12/303 (3%)

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           VD A  +FD    R +  WN +  AL+ +GR  E L++   M   G  +R D  TYT  L
Sbjct: 220 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG--VRLDSTTYTSSL 277

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
            AC       S L+ GK++HA V+R+      ++ + L+++YA+ GC   A  VF+ +  
Sbjct: 278 TACAR----LSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHD 333

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           +N V+W+ +IA + ++G   E++ELF +M  E   L  +   + +++  C +   L  G+
Sbjct: 334 RNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTL--DQFALATLISGCCSRMDLCLGR 391

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
            +H   L+ G    + V ++L++MYA+C  L+  + +F  M+++D+VSW S+I+++   G
Sbjct: 392 QLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVG 451

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
              KA + F  M    V    I++ ++LGA    G  E+G  ++  M  E  +RP    Y
Sbjct: 452 NIAKAREFFDGMSTKNV----ITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTY 507

Query: 431 ACM 433
             +
Sbjct: 508 VTL 510



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 116/267 (43%), Gaps = 37/267 (13%)

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
           N I H    +++ Y + G +  A  +F +M  ++V SW+ +++ Y ++     +LE F  
Sbjct: 70  NVITH--NVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVS 127

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M   S D  PN+ T    +++C AL        + G + + G      V +ALV M+ RC
Sbjct: 128 M-HRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRC 186

Query: 339 GKLELGQ------------C-------------------VFDHMDKRDVVSWNSLISSYG 367
           G ++L              C                   +FD M +RDVVSWN ++S+  
Sbjct: 187 GTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHMIRPS 426
             G   +A+ +  +M   GV     ++ S L AC+    +  GK L  + +R    I P 
Sbjct: 247 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPY 306

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDL 453
           V   + +V+L  +    +EA  +   L
Sbjct: 307 VA--SALVELYAKCGCFKEAKGVFNSL 331


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/616 (35%), Positives = 344/616 (55%), Gaps = 20/616 (3%)

Query: 55  LIQSLCKQGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           +I +  K G L +A+ + S      I PN     Y  LL SC   + L     +HSH+  
Sbjct: 159 VISAYAKNGELEKAIRLFSDMQASGIRPNSA--VYMSLLQSCLGPSFLELGKQIHSHVIR 216

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              + +  + T + N+Y     ++ A+ VFD    +    W  L    T A + E  LEL
Sbjct: 217 AQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALEL 276

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + RM     G+  D F ++ VLK C    CG      G++IH+ +++ G    V + T L
Sbjct: 277 FARM--AMEGVELDEFVFSIVLKVC----CGLEDWDMGRQIHSHIVKLGAESEVSVGTPL 330

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +D Y + G +  A   F +++  N VSWSA+I+ ++++G   + +++F  +   S  +  
Sbjct: 331 VDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSL--RSEGVVL 388

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           NS    SV QACAA A L  G   HG  ++RGL S L   SA+VTMY++CG+L+  +  F
Sbjct: 389 NSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAF 448

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + +D+ D V+W ++IS Y  HG   +A+  F+ M  +GV P+ ++F++VL ACSH+GLV 
Sbjct: 449 ESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVA 508

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           E K    SM +++ ++P+++HY CM+D   RA  L+EA ++I  +  EP    W SLLG 
Sbjct: 509 EAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGG 568

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C  HC+++L + A++ LF L+P +   Y+LL ++Y+A   W+E   V++L+  R L+K  
Sbjct: 569 CWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEV 628

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKG--YVPQTKVVLYDLDAEE 586
             S I VK +++ FV  D  HPQ E +++ L      + +     + +   V   L A +
Sbjct: 629 SCSWISVKGQVHRFVVGDRHHPQTEAIYSKLEEFKCSVIDSPVRLLNEEDDVSCSLSARK 688

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           ++  +L HSEKLA+AFGLI+T     I + KNLR C DCH F K +S    ++I+VRD  
Sbjct: 689 EQ--LLDHSEKLAIAFGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDST 746

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF++G CSC DYW
Sbjct: 747 RFHHFKSGKCSCNDYW 762



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 216/471 (45%), Gaps = 18/471 (3%)

Query: 14  RSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQ--SLCKQGNLRQALDV 71
           R+   T+S A+    PS V   +  +SST  T    + K E +   SL KQG L++A D 
Sbjct: 17  RNQTSTSSSANFAQIPSWVS--LKRSSSTIKTEKIQQGKLENLHLVSLSKQGKLKEAHDF 74

Query: 72  L----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH 127
           L      + + T H+Y+ L  +C    SL+D   +H  L     +    +   L+ +Y  
Sbjct: 75  LKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCD 134

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
             S  D + VFD+   + +  W  +  A    G  E+ + L+  M    +GIR +   Y 
Sbjct: 135 CGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQ--ASGIRPNSAVYM 192

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
            +L++C+    G S L+ GK+IH+ V+R   N  + + T + +MY R G +  A  VF  
Sbjct: 193 SLLQSCL----GPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDG 248

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M  +N V+W+ ++  Y +      ALELF  M ME  +L  +      VL+ C  L   +
Sbjct: 249 MDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVEL--DEFVFSIVLKVCCGLEDWD 306

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+ IH +I++ G +S + V + LV  Y +CG +E     F  + + + VSW++LIS + 
Sbjct: 307 MGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFS 366

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
             G     I+IF  +   GV  +   + SV  AC+    +  G        K  ++    
Sbjct: 367 QSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLY 426

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
              A MV +  +  +L+ A +  E +  EP    W +++     H N   A
Sbjct: 427 GESA-MVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAYHGNAAEA 475



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 18/235 (7%)

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           ++ G   EA +  +EM      + P+S     + +AC  L +L  G++IH  + R   + 
Sbjct: 63  SKQGKLKEAHDFLKEMDDADVSVTPHSYQ--CLFEACGKLRSLADGRLIHDRLRRTVKNP 120

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
              + + L+ MY  CG     Q VFD M  +++VSW  +IS+Y  +G   KAI++F +M 
Sbjct: 121 SGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQ 180

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP------SVEHYACMVDLL 437
             G+ P+   ++S+L +C     +E GK +       H+IR       +VE   C  ++ 
Sbjct: 181 ASGIRPNSAVYMSLLQSCLGPSFLELGKQI-----HSHVIRAQLNANITVETAIC--NMY 233

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLG---SCRIHCNVELAERASKRLFELE 489
            R   LE A  + + +  +      G ++G   + ++   +EL  R +    EL+
Sbjct: 234 VRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELD 288


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/607 (35%), Positives = 347/607 (57%), Gaps = 45/607 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+  LL SC    +  +   +H H+   GFD D ++ T LI++Y+    ++DA+ V
Sbjct: 73  PNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKV 132

Query: 138 FDKTRRRTI--------------YV-----------------WNALFRALTLAGRGEEVL 166
           FD++  R +              Y+                 WNA+       G  ++ L
Sbjct: 133 FDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKAL 192

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++ M    T ++ D  T   V+ AC  S      ++ G+++H+ +  HG+   + I+ 
Sbjct: 193 ELFKEM--MKTNVKPDESTMATVVSACAQSGS----IELGRQVHSWINDHGFGSNLKIVN 246

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LID+Y++ G V  A  +   ++ K+V+SW+ +I  Y    +  EAL LF+EM+      
Sbjct: 247 ALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-- 304

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT----MYARCGKLE 342
            PN VTM+S+L ACA L A++ G+ IH YI ++    ++   S+L T    MYA+CG ++
Sbjct: 305 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDID 364

Query: 343 LGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
               V D     R + +WN++I  + +HG    A  IF  M  +G+ P  I+FV +L AC
Sbjct: 365 AAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC 424

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SH+G+++ G+ +F SMR+++ I P +EHY CM+DLLG +   +EA ++I  + +EP   +
Sbjct: 425 SHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVI 484

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W SLL +C+IH N+EL E  +K+L ++EP N G+YVLL+++YA A  W+EV +++ LL  
Sbjct: 485 WCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLND 544

Query: 522 RGL-QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLY 580
           +G+ +KVPG S IE+   ++ F+  D+ HPQ  +++ +L  +   ++E G+VP T  VL 
Sbjct: 545 KGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQ 604

Query: 581 DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEI 640
           +++ E KE  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH  TK ISK   +EI
Sbjct: 605 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 664

Query: 641 LVRDVNR 647
           + RD  R
Sbjct: 665 IARDRTR 671



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 193/380 (50%), Gaps = 42/380 (11%)

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
           HFD +  A  VF+        +WN +FR   L+      L+LY  M     G+  + FT+
Sbjct: 21  HFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVM--ISLGLLPNFFTF 78

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG---------- 236
            ++LK+C  S       K G++IH  VL+ G++  +++ T+LI MYA+ G          
Sbjct: 79  PFLLKSCAKSKT----FKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFD 134

Query: 237 ------CVMYAGFV---------------FSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
                  V Y   +               F ++ +K+VVSW+AMI+ YA  G   +ALEL
Sbjct: 135 RSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALEL 194

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F+EM+    ++ P+  TM +V+ ACA   ++E G+ +H +I   G  S L +V+AL+ +Y
Sbjct: 195 FKEMM--KTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLY 252

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ++CG++E    + + +  +DV+SWN+LI  Y       +A+ +F+EM+  G +P+ ++ +
Sbjct: 253 SKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTML 312

Query: 396 SVLGACSHAGLVEEGKML---FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           S+L AC+H G ++ G+ +    +   K  ++  +      ++D+  +   ++ A ++ + 
Sbjct: 313 SILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDS 372

Query: 453 LRIEPGPKVWGSLLGSCRIH 472
                    W +++    +H
Sbjct: 373 SAFNRSLSTWNAMIFGFAMH 392


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/566 (38%), Positives = 339/566 (59%), Gaps = 12/566 (2%)

Query: 85  LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR 144
           LL L  +H  +L DAL + S +          L++ L     H  S   AR +FD+  +R
Sbjct: 68  LLHLLSSHPATLPDALALFSSIAAPDICSHNTLISALSRSPRHLPS---ARELFDRMPQR 124

Query: 145 TIYVWNALFRALTLAGRGEEVLELYRRMNG-TGTGIRSDRFTYTYVLKACVASSCGFSLL 203
             + W+AL       G+ E  L LYRRM    G     + FT +  L A  A+ CG    
Sbjct: 125 DHFAWSALVSGYARHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCG---- 180

Query: 204 KHGKEIHASVLRHGYN---GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           + G+E+H  V+R G +   G   + + L DMYA+ G V  A  VF +M V++ VSW+AM+
Sbjct: 181 RAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMV 240

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             Y   G   E   LF  M + +  + PN  T   VL+ACA  A    G+ +HG + + G
Sbjct: 241 ERYFDGGRGGEGFRLFLHM-LRTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSG 299

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
                   SAL+ MY++CG +     VF+ M K D+VSW ++IS Y  +G   +A++ F 
Sbjct: 300 TGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFD 359

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
             +  G+ P  ++FV VL AC+HAGLV++G  +F S+++++ I  + +HYAC++DLL R+
Sbjct: 360 MFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRS 419

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            + E A K+I ++ ++P   +W SLLG CRIH NV LA RA++ LFE+EP N   YV LA
Sbjct: 420 GQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLA 479

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YA+  ++DEV+ V+R++E++G+ K+P  S IEV R+++ F+  D+ HP+ ++++ALL 
Sbjct: 480 NIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLK 539

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            L  +M E+GYV   + VL+D++ E+KE+ +  HSE+LAVAFG+I + +G  I++ KNLR
Sbjct: 540 KLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIASPEGSPIKVFKNLR 599

Query: 621 LCEDCHSFTKFISKFANKEILVRDVN 646
           +C DCH+  K IS+   ++I+VRD N
Sbjct: 600 ICGDCHAAIKLISQIVQRDIIVRDSN 625


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/602 (36%), Positives = 345/602 (57%), Gaps = 16/602 (2%)

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDAL---NVHSHLTDNGFDQDPFLVTK 120
           N    + +   +PNP   T  L    C     LS AL    +H       +D +P +   
Sbjct: 235 NTFSKMRMTGFKPNPFVLTSALKAAVC-----LSSALLGKGIHGCSVKTLYDTEPHVGGA 289

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           L+++Y+    ++DA  +F+      + +W+ L      + + E+  E++ RM    + + 
Sbjct: 290 LLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRM--MRSFVV 347

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            + F+ + VL+AC       + L+ G++IH   ++ GY   + +   L+DMYA+   +  
Sbjct: 348 PNEFSLSGVLQACA----NIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMEN 403

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           +  +FS +   N VSW+ +I  Y ++G A +AL +F EM   +  +    VT  SVL+AC
Sbjct: 404 SLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEM--RAAHMLSTQVTFSSVLRAC 461

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           A  ++++    IH  I +   ++   V ++L+  YA+CG +     VF+ + + DVVSWN
Sbjct: 462 ANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWN 521

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           S+IS+Y +HG    A+++F  M    +  + ++FVS+L  C   GLV +G  LF SM  +
Sbjct: 522 SIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMD 581

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           H I+PS+EHY C+V LLGRA +L +A K I D+   P P VW +LL SC +H NV L   
Sbjct: 582 HRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRY 641

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
           A++++ ++EP +   YVLL+++YAAA + DEV   ++ +   G++K  G S +E+K +++
Sbjct: 642 AAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVH 701

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
           +F      HP    ++A+L  L+ +   +GYVP   VVL+D+D EEK R++  HSE+LA+
Sbjct: 702 AFSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLAL 761

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           A+GL  T  G  IRI KNLR C DCH+  K ISK   +EI+VRD+NRFHHF  G+CSCGD
Sbjct: 762 AYGLSMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGD 821

Query: 661 YW 662
           YW
Sbjct: 822 YW 823



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 209/439 (47%), Gaps = 22/439 (5%)

Query: 55  LIQSLCKQGNLRQALDV---LSIEPNPTQH-TYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           L+Q    +G   +AL++   L  E +   H     +L      ++   A  +H+     G
Sbjct: 119 LMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLG 178

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
            D++ F+ T LI+ YS   +V  AR VFD    +    W A+    +     E  L  + 
Sbjct: 179 HDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFS 238

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           +M    TG + + F  T  LKA V  S        GK IH   ++  Y+   H+   L+D
Sbjct: 239 KMR--MTGFKPNPFVLTSALKAAVCLSSALL----GKGIHGCSVKTLYDTEPHVGGALLD 292

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MYA+ G +  A  +F  +   +V+ WS +I+ YA++    +A E+F  M M S  + PN 
Sbjct: 293 MYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRM-MRSF-VVPNE 350

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            ++  VLQACA +A LE G+ IH   ++ G +S L V +AL+ MYA+C  +E    +F  
Sbjct: 351 FSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSS 410

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           +   + VSWN++I  Y   G+   A+ +F EM    +  + ++F SVL AC++   ++  
Sbjct: 411 LQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHA 470

Query: 411 KMLFESMRKEHMIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
             +   + K      ++    C  ++D   +   + +A K+ E + +E     W S++ +
Sbjct: 471 VQIHSLIEKSTFNNDTI---VCNSLIDTYAKCGFIRDALKVFESI-VECDVVSWNSIISA 526

Query: 469 CRIHCN----VELAERASK 483
             +H      +EL +R +K
Sbjct: 527 YALHGRATNALELFDRMNK 545



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 153/319 (47%), Gaps = 20/319 (6%)

Query: 102 VHSHLTDNG--FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
           VH+ +   G     D F    L+N Y+    +  AR +FD    R    +  L +   L 
Sbjct: 67  VHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALR 126

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS-----SCGFSLLKHGKEIHASVL 214
           G  EE LEL+RR+   G  +  + F  T +LK  V       +CG         IHA   
Sbjct: 127 GEFEEALELFRRLQREGHEV--NHFVLTTILKVLVTMDAPGLACG---------IHACAC 175

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           + G++    + T LID Y+  G V +A  VF  +  K+ V+W+AM++CY+ N +   AL 
Sbjct: 176 KLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALN 235

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
            F +M M      PN   + S L+A   L++   GK IHG  ++   D+   V  AL+ M
Sbjct: 236 TFSKMRMTGFK--PNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDM 293

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           YA+CG +E    +F+ +   DV+ W+ LIS Y       +A ++F  M+   V P+  S 
Sbjct: 294 YAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSL 353

Query: 395 VSVLGACSHAGLVEEGKML 413
             VL AC++   +E G+ +
Sbjct: 354 SGVLQACANIAFLELGEQI 372



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           ++S +    +RN  A EAL+   + +        +S      LQ C A      G+ +H 
Sbjct: 10  TFSQINGLLSRNLAANEALQWLDDELASLALPKLDSYACARFLQRCIARGDARAGRAVHA 69

Query: 315 YILRRGLDSILPVVSA--LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
            +++RG  + L    A  L+  YA+ G L   + +FD M +R+ VS+ +L+  Y + G  
Sbjct: 70  RVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEF 129

Query: 373 GKAIQIFKEMIYHG 386
            +A+++F+ +   G
Sbjct: 130 EEALELFRRLQREG 143


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/610 (37%), Positives = 340/610 (55%), Gaps = 51/610 (8%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINV---YSHFDSVDDARHVFDKTRRRTIYVWN 150
            S+S     HS +   G      L+  LIN     S  D++  A  +FD   +   +++N
Sbjct: 33  QSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYN 92

Query: 151 ALFRALTLAG--RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
            + +    +       +L LY  M      +  + FT+  +L AC         ++HG +
Sbjct: 93  TIIKGFLHSQLLPTNSILLLYSHM--LQNSVLPNNFTFPSLLIACRK-------IQHGMQ 143

Query: 209 IHASVLRHGY-------NGIVHIM------------------------TTLIDMYARFGC 237
           IHA + + G+       N ++H+                         T+LI  Y+++G 
Sbjct: 144 IHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGL 203

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           +  A  +F  M  KN  SW+AM+A Y +     EA  LF  M  E++++    V   ++L
Sbjct: 204 IDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVA-TTML 262

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RD 355
            AC  L AL+QGK IH YI R G++    + +A+V MY +CG LE    VF  +    R 
Sbjct: 263 SACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRW 322

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           + SWN +I    +HG G  AIQ+FKEM    V+P  I+F+++L AC+H+GLVEEG+  F 
Sbjct: 323 ISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFS 382

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
            M + + I P +EH+ CMVDLLGRA  + EA K+I+++ + P   V G+LLG+C+ H N+
Sbjct: 383 YMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNI 442

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           EL E   +R+ ELEP N+G YVLLA++YA A  W++  +V++L++ RG++K PG S IE+
Sbjct: 443 ELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIEL 502

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL--YDLDAEEK-ERIVL 592
           +  ++ F++ +  HPQ ++LHA +  +   +K  GYV  T  VL  +D D EE  E  + 
Sbjct: 503 QGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGENPLY 562

Query: 593 GHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652
            HSEKLA+AFGL  T  GET+RI KNLR+CEDCH   K IS   ++EI+VRD  RFH F+
Sbjct: 563 YHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRFK 622

Query: 653 NGVCSCGDYW 662
            G CSC DYW
Sbjct: 623 MGQCSCQDYW 632



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 109/273 (39%), Gaps = 44/273 (16%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR-- 143
           +L +CT   +L     +H ++  NG + D  L T ++++Y     ++ A  VF       
Sbjct: 261 MLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPC 320

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
           R I  WN +   L + G GE  ++L++ M      +  D  T+  +L AC  S     L+
Sbjct: 321 RWISSWNCMIGGLAMHGNGEAAIQLFKEME--RQRVAPDDITFLNLLTACAHS----GLV 374

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
           + G+   + ++R    GI   M         FGC                     M+   
Sbjct: 375 EEGRNYFSYMIR--VYGIEPRME-------HFGC---------------------MVDLL 404

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
            R GM  EA +L  EM      + P+   + ++L AC     +E G+ I   ++    ++
Sbjct: 405 GRAGMVPEARKLIDEM-----PVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNN 459

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
               V  L  +YA  GK E    V   MD R V
Sbjct: 460 SGRYV-LLANLYANAGKWEDAAKVRKLMDDRGV 491


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/552 (38%), Positives = 319/552 (57%), Gaps = 46/552 (8%)

Query: 147 YVWNALFRALTLA----GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           +VWN L RA T +          L LY RM      +  D  T+ ++L++        + 
Sbjct: 25  FVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHA--VLPDLHTFPFLLQS-------INT 75

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMY------------------------------ 232
              G+++HA +L  G      + T+LI+MY                              
Sbjct: 76  PHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHA 135

Query: 233 -ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM-IMESHDLCPNS 290
            A+ G +  A  +F QM  KNV+SWS MI  Y   G    AL LFR +  +E   L PN 
Sbjct: 136 NAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNE 195

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            TM SVL ACA L AL+ GK +H YI + G+   + + ++L+ MYA+CG +E  +C+FD+
Sbjct: 196 FTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDN 255

Query: 351 M-DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
           +  ++DV++W+++I+++ +HG   + +++F  M+  GV P+ ++FV+VL AC H GLV E
Sbjct: 256 LGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSE 315

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           G   F+ M  E+ + P ++HY CMVDL  RA ++E+A  +++ + +EP   +WG+LL   
Sbjct: 316 GNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGA 375

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
           RIH +VE  E A  +L EL+P N+  YVLL++VYA    W EV+ ++ L+E RG++K+PG
Sbjct: 376 RIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPG 435

Query: 530 RSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKER 589
            S +EV   +  F + D  HP+   L+ +L  +   +++ GY   T  VL DLD E KE 
Sbjct: 436 CSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEF 495

Query: 590 IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
            +  HSEKLA+A+  + TS G TIRI KNLR+C DCH   K ISK  N+EI+VRD NRFH
Sbjct: 496 ALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFH 555

Query: 650 HFRNGVCSCGDY 661
           HF+NG+CSC DY
Sbjct: 556 HFKNGLCSCKDY 567



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 158/332 (47%), Gaps = 52/332 (15%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH---------- 127
           P  HT+  LL S    N+      +H+ +   G   DPF+ T LIN+YS           
Sbjct: 61  PDLHTFPFLLQSI---NTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQA 117

Query: 128 FDSVDD---------------------ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FD +                       AR +FD+   + +  W+ +       G  +  L
Sbjct: 118 FDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAAL 177

Query: 167 ELYRRMNG-TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
            L+R +    G+ +R + FT + VL AC         L+HGK +HA + + G    V + 
Sbjct: 178 SLFRSLQTLEGSQLRPNEFTMSSVLSACAR----LGALQHGKWVHAYIDKTGMKIDVVLG 233

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAV-KNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
           T+LIDMYA+ G +  A  +F  +   K+V++WSAMI  ++ +G++ E LELF  M+ +  
Sbjct: 234 TSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDG- 292

Query: 285 DLCPNSVTMVSVLQACAALAALEQG-----KMIHGYILRRGLDSILPVVSALVTMYARCG 339
            + PN+VT V+VL AC     + +G     +M++ Y    G+  ++     +V +Y+R G
Sbjct: 293 -VRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEY----GVSPMIQHYGCMVDLYSRAG 347

Query: 340 KLELGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
           ++E    V   M  + DV+ W +L++   +HG
Sbjct: 348 RIEDAWNVVKSMPMEPDVMIWGALLNGARIHG 379


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/577 (37%), Positives = 335/577 (58%), Gaps = 7/577 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L+  TH  SL   L +H  +   GF+  P +   LIN YS  +    +  +FD    ++
Sbjct: 13  VLVWFTHTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKS 72

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
              W+++  +          L  +RRM      +R       + L     S    S L  
Sbjct: 73  ATTWSSVISSFAQNDLPLPALRFFRRM------LRHGLLPDDHTLPTAAKSVAALSSLPL 126

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
              +HA  L+  ++  V + ++L+D YA+ G V  A  VF +M  KNVVSWS MI  Y++
Sbjct: 127 ALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQ 186

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G+  EAL LF+  + + +D+  N  T+ SVL+ C+A    E GK +HG   +   DS  
Sbjct: 187 MGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSC 246

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V S+L+++Y++CG +E G  VF+ +  R++  WN+++ +   H + G+  ++F+EM   
Sbjct: 247 FVASSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERV 306

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           GV P+ I+F+ +L ACSHAGLVE+G+  F  M KEH I P  +HYA +VDLLGRA KLEE
Sbjct: 307 GVKPNFITFLCLLYACSHAGLVEKGEHCFGLM-KEHGIEPGSQHYATLVDLLGRAGKLEE 365

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A  +I+++ ++P   VWG+LL  CRIH N ELA   + ++FE+   ++G  VLL++ YAA
Sbjct: 366 AVLVIKEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAA 425

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
           A  W+E  R ++++  +G++K  G S +E   ++++F + D  H +  +++  L  L  E
Sbjct: 426 AGRWEEAARARKMMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEE 485

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           M + GYV  T  VL ++D +EK + +  HSE+LA+AFGLI       IR+ KNLR+C DC
Sbjct: 486 MAKAGYVADTSFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDC 545

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H+  KFISK   + I+VRD NRFH F +G C+CGDYW
Sbjct: 546 HTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 582


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/608 (35%), Positives = 339/608 (55%), Gaps = 43/608 (7%)

Query: 90  CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVW 149
           C  + +L+ A  +H+H+   G  Q   L   L+NVY    +   A  VFD+   R    W
Sbjct: 13  CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAW 72

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
            ++  AL  A    + L ++  +  +   +R D F ++ ++KAC         + HG+++
Sbjct: 73  ASVLTALNQANLSGKTLSVFSSVGSSSG-LRPDDFVFSALVKACA----NLGSIDHGRQV 127

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           H   +   Y     + ++L+DMYA+ G +  A  VF  + VKN +SW+AM++ YA++G  
Sbjct: 128 HCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRK 187

Query: 270 FEALELFR-------------------------------EMIMESHDLCPNSVTMVSVLQ 298
            EALELFR                               EM  E  D+  + + + S++ 
Sbjct: 188 EEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDIL-DPLVLSSIVG 246

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           ACA LAA   G+ +HG ++  G DS + + +AL+ MYA+C  +   + +F  M  RDVVS
Sbjct: 247 ACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVS 306

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           W SLI     HG   KA+ ++ +M+ HGV P+ ++FV ++ ACSH G VE+G+ LF+SM 
Sbjct: 307 WTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMT 366

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
           K++ IRPS++HY C++DLLGR+  L+EA  +I  +   P    W +LL +C+     ++ 
Sbjct: 367 KDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMG 426

Query: 479 ERASKRL---FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
            R +  L   F+L+  +   Y+LL+++YA+A +W +V   +R L    ++K PG S +EV
Sbjct: 427 IRIADHLVSSFKLK--DPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEV 484

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMK-EKGYVPQTKVVLYDLDAEEKERIVLGH 594
           +++   F + +  HP  E +  LL  L  EM+   GYVP T  +L+D+D +EKE+++  H
Sbjct: 485 RKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWH 544

Query: 595 SEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
           SE+ AVA+GL+    G  IRI KNLR+C DCH   K IS+   +EI+VRD  R+HHF+ G
Sbjct: 545 SERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGG 604

Query: 655 VCSCGDYW 662
            CSC D+W
Sbjct: 605 KCSCNDFW 612



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 173/365 (47%), Gaps = 33/365 (9%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P    +  L+ +C +  S+     VH H   + +  D  + + L+++Y+    ++ A+ V
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 162

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM-----------------NGTG---- 176
           FD  R +    W A+      +GR EE LEL+R +                 +G G    
Sbjct: 163 FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAF 222

Query: 177 ---TGIRSDRFTY--TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
              T +R +R       VL + V +    +    G+++H  V+  G++  V I   LIDM
Sbjct: 223 SVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDM 282

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           YA+   V+ A  +FS+M  ++VVSW+++I   A++G A +AL L+ +M+  SH + PN V
Sbjct: 283 YAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMV--SHGVKPNEV 340

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           T V ++ AC+ +  +E+G+ +   + +  G+   L   + L+ +  R G L+  + +   
Sbjct: 341 TFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHT 400

Query: 351 MD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV---SVLGACSHAGL 406
           M    D  +W +L+S+    G G   I+I   ++       P +++   ++  + S  G 
Sbjct: 401 MPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGK 460

Query: 407 VEEGK 411
           V E +
Sbjct: 461 VSEAR 465



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
           LQ CA    L   K +H +I++ G+    P+ + LV +Y +CG       VFD M  RD 
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69

Query: 357 VSWNSLISSYGVHGYGGKAI-QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK---- 411
           ++W S++++       GK +          G+ P    F +++ AC++ G ++ G+    
Sbjct: 70  IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129

Query: 412 -MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
             +      + +++ S      +VD+  +   L  A  + + +R++
Sbjct: 130 HFIVSEYANDEVVKSS------LVDMYAKCGLLNSAKAVFDSIRVK 169


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/623 (34%), Positives = 340/623 (54%), Gaps = 44/623 (7%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E  P       ++  C     +     VH  +  NG   D  L   ++++Y+     + A
Sbjct: 107 EATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERA 166

Query: 135 RHVF-------------------------------DKTRRRTIYVWNALFRALTLAGRGE 163
           R VF                               D++  R    WN +   L  +G   
Sbjct: 167 RRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAA 226

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH-GKEIHASVLRHGYNGIV 222
           + L   RRM   G       ++  +VL        G  LL   G+++H  VL     G  
Sbjct: 227 DALSHLRRMAQAGVVFNHYTYSTAFVL-------AGMLLLPDLGRQLHGRVLIAALEGDA 279

Query: 223 HIMTTLIDMYARFGCVMYAGFVF---SQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
            + ++L+DMY + G +  A  VF   S +      +WS M+A Y +NG   EAL+LFR M
Sbjct: 280 FVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRM 339

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           + E   +  +  T+ SV  ACA +  +EQG+ +HG + +       P+ SA+V MYA+CG
Sbjct: 340 LREG--VAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCG 397

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            LE  + +FD    +++  W S++ SY  HG G  AI++F+ M    ++P+ I+ V VL 
Sbjct: 398 NLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLS 457

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           ACSH GLV EG++ F+ M++E+ I PS+EHY C+VDL GR+  L++A   IE+  I    
Sbjct: 458 ACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEA 517

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
            VW +LL +CR+H + E A+ AS++L +LE  +AG+YV+L+++YA  + W +   ++  +
Sbjct: 518 IVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSM 577

Query: 520 EARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579
           + R ++K PGRS I +K  +++FV+ D  HPQ  +++A L  L   +KE GY  +T +V+
Sbjct: 578 QERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVV 637

Query: 580 YDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKE 639
           +D++ E++E  +  HSEKLA+AFG+I+T  G  +RI KNLR+CEDCH   K+IS    +E
Sbjct: 638 HDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLATGRE 697

Query: 640 ILVRDVNRFHHFRNGVCSCGDYW 662
           I+VRD+ RFHHF++  CSC D+W
Sbjct: 698 IVVRDLYRFHHFKDASCSCEDFW 720



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 166/384 (43%), Gaps = 43/384 (11%)

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           DAR VFD+   RT  VW          GR  + +  +  M   G    +      +VL A
Sbjct: 63  DARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPN-----AFVLAA 117

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
            V    G   ++ GK +H  +LR+G +  V +   ++DMYA+ G    A  VF  MA ++
Sbjct: 118 VVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERD 177

Query: 253 VVSWSAMIACYARNGMAFEALELFREMI-----------------------------MES 283
            VSW+  I    ++G    +++LF E                               M  
Sbjct: 178 AVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQ 237

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
             +  N  T  +       L   + G+ +HG +L   L+    V S+L+ MY +CG LE 
Sbjct: 238 AGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEA 297

Query: 344 GQCVFDHMD--KRDV-VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
              VFDH     RD+  +W+++++ Y  +G   +A+ +F+ M+  GV+    +  SV  A
Sbjct: 298 AASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAA 357

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
           C++ G+VE+G+ +   + K    +      + +VD+  +   LE+A  I  D        
Sbjct: 358 CANVGMVEQGRQVHGCVEK-LWYKLDAPLASAIVDMYAKCGNLEDARSIF-DRACTKNIA 415

Query: 461 VWGSLLGSCRIHCN----VELAER 480
           VW S+L S   H      +EL ER
Sbjct: 416 VWTSMLCSYASHGQGRIAIELFER 439



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 1/181 (0%)

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           +LL  G+      L      + H   +++  + R      A  VF +   +    W+  I
Sbjct: 24  ALLLRGRAARGGSLEARLATVPHERASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTI 83

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           +  AR G   + +  F EM+ E  +  PN+  + +V++ CA +  +E GK +HG++LR G
Sbjct: 84  SGCARRGRYADGMRAFAEMLAEG-EATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNG 142

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           +   + + +A++ MYA+CG+ E  + VF  M +RD VSWN  I +    G    ++Q+F 
Sbjct: 143 VHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFD 202

Query: 381 E 381
           E
Sbjct: 203 E 203



 Score = 42.0 bits (97), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 3/167 (1%)

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
           A L +G+   G  L   L ++    ++++  + R  +    + VFD    R    W   I
Sbjct: 24  ALLLRGRAARGGSLEARLATVPHERASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTI 83

Query: 364 SSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           S     G     ++ F EM+  G  +P+     +V+  C+  G VE GK +   M + + 
Sbjct: 84  SGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLR-NG 142

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           +   V     ++D+  +  + E A ++   +  E     W   +G+C
Sbjct: 143 VHLDVVLCNAVLDMYAKCGQFERARRVFGAM-AERDAVSWNIAIGAC 188


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/717 (32%), Positives = 375/717 (52%), Gaps = 94/717 (13%)

Query: 24  HLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSL-------CKQGNLRQALDVLSIEP 76
           HLPP P+ +     L   TTP +   +N      SL        K   L  A  V +  P
Sbjct: 27  HLPPSPNQIT--THLKCRTTPFTTLIQNPKSSSTSLNFTFLNHLKNQKLDSARAVFNKIP 84

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG-------------------------F 111
           +P    Y  LLL+  H+N+L +A+N+ + +  N                          F
Sbjct: 85  SPHVSLYTKLLLAYAHNNNLHEAINLFNQIPSNTKDTISWNSVIKASIICNDFVTAVKLF 144

Query: 112 DQDP-------------FLVT------------------------KLINVYSHFDSVDDA 134
           D+ P             FL T                         ++N Y +   V+DA
Sbjct: 145 DEMPQRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNAMVNGYCNNGRVNDA 204

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG-TGTGIRSDRFTYTYVLKAC 193
             +F +   R +  W ++   L   G+  + L  ++ M G +G GI S            
Sbjct: 205 LRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTTLV-------- 256

Query: 194 VASSCGFSL------LKHGKEIHASVLRHGY-NGIVHIMT-TLIDMYARFGCVMYAGFVF 245
               CG S          G +IH  + + G+  G+   ++ +L+  YA    +  A  VF
Sbjct: 257 ----CGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACKVF 312

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
            +   KNVV W+A++     N    EALE+F EM+    ++ PN  +  S L +C  L  
Sbjct: 313 GETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMM--RFNVVPNESSFTSALNSCVGLED 370

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           LE+G++IH   ++ GL++ +   ++LV MY++CG +    CVF  + +++VVSWNS+I  
Sbjct: 371 LEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKGICEKNVVSWNSVIVG 430

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
              HG G  A+ +FKEM+  GV    I+   +L ACS +G++++ +  F    ++  ++ 
Sbjct: 431 CAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGMLQKARCFFGYFARKRSMKL 490

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
           +VEHYACMVD+LGR  ++EEA  +   + +E    VW  LL +CR+H ++++AERA+KR+
Sbjct: 491 TVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSACRVHSSLDVAERAAKRI 550

Query: 486 FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSV 545
           FE+EP  +  YVLL+++YA++  W EV R++  ++  G+ K PG S I +K   + F+S 
Sbjct: 551 FEMEPDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQPGSSWITLKGMRHEFLSA 610

Query: 546 DEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLI 605
           D  HP  E+++  L+ L  +++E GY+P  +  L+D++ E+ E ++  HSE+LA+AFGL+
Sbjct: 611 DRSHPLTEEIYEKLVWLGVKLRELGYIPDQQFALHDVEIEQNEEMLSYHSERLAIAFGLL 670

Query: 606 NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +T +G TI I KNLR+C DCH+    ++K  N+EI+VRD +RFHHF+NG+CSCGDYW
Sbjct: 671 STVEGSTITIMKNLRVCGDCHTAITLMAKIVNREIVVRDSSRFHHFKNGICSCGDYW 727


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/520 (40%), Positives = 313/520 (60%), Gaps = 40/520 (7%)

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
           +G   +R+T+ +V KAC     G  +L+ G++I    ++ G    + +   +I MYA +G
Sbjct: 26  SGFLPNRYTFVFVFKAC---GNGLGVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWG 81

Query: 237 CV--------------------MYAGFV-----------FSQMAVKNVVSWSAMIACYAR 265
            V                    M  G+V           F +M+ ++VVSW+ +IA Y +
Sbjct: 82  LVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQ 141

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G   EAL+LF EM+       PN  T+ S L ACA L AL+QG+ IH YI +  +    
Sbjct: 142 VGCFKEALDLFHEMLQTGPP--PNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNE 199

Query: 326 PVVSALVTMYARCGKLELGQCVF--DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            ++++L+ MYA+CG+++    VF  ++  K  V  WN++I  Y +HG   +AI +F++M 
Sbjct: 200 RLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMK 259

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
              VSP+ ++FV++L ACSH  LVEEG+  F+SM   + I P +EHY CMVDLLGR+  L
Sbjct: 260 VEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLL 319

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
           +EA + + ++ + P   +WG+LLG+CRIH ++E  +R  K + EL+  + G +VLLA++Y
Sbjct: 320 KEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLY 379

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           +A+  WDE K V++ +E  G +K PG S IE+    + F+  D  HPQ +QL+  L  ++
Sbjct: 380 SASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMT 439

Query: 564 AEMKEKGYVPQTKVVLYDLDAEE-KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLC 622
            ++K  GYVP+   VL D+D EE KE  +  HSEKLA+AFGLINT  G  IRI KNLR+C
Sbjct: 440 TKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVC 499

Query: 623 EDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            DCH  TKFISK   +EI+VRD  R+HHF++G CSC DYW
Sbjct: 500 ADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 153/348 (43%), Gaps = 56/348 (16%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P ++T+  +  +C +   + +   +  H    G + + F+   +I +Y+++  VD+AR V
Sbjct: 30  PNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRV 89

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGE---------------------------------E 164
           FD +  + +Y WN +       G GE                                 E
Sbjct: 90  FDWSLDQDLYSWNIMIGGYV--GSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKE 147

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
            L+L+  M    TG   + FT    L AC         L  G+ IH  + +        +
Sbjct: 148 ALDLFHEM--LQTGPPPNEFTLASALAAC----ANLVALDQGRWIHVYIDKSEIKMNERL 201

Query: 225 MTTLIDMYARFGCVMYAGFVF-SQMAVK-NVVSWSAMIACYARNGMAFEALELFREMIME 282
           + +L+DMYA+ G + +A  VF  +  +K  V  W+AMI  YA +G + EA++LF +M +E
Sbjct: 202 LASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVE 261

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR----GLDSILPVVSALVTMYARC 338
              + PN VT V++L AC+    +E+G+   GY        G++  +     +V +  R 
Sbjct: 262 K--VSPNKVTFVALLNACSHGKLVEEGR---GYFKSMASSYGIEPEIEHYGCMVDLLGRS 316

Query: 339 GKL-ELGQCVFDHMDKRDVVSWNSLISSYGVHG---YGGKAIQIFKEM 382
           G L E  + VF+     D   W +L+ +  +H     G +  +I KE+
Sbjct: 317 GLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKEL 364


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/577 (37%), Positives = 331/577 (57%), Gaps = 8/577 (1%)

Query: 87  LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI 146
           LLS T   SL   L +H+H+   G    P L   LIN YS       +  +F  +  ++ 
Sbjct: 27  LLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSA 86

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206
             W+++  +          L  +R M     G+  D   +    K+C       S L   
Sbjct: 87  TTWSSVISSFAQNDLPLLSLNYFRLM--LRQGVPPDDHIFPSATKSCGI----LSSLPVA 140

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           K +H   L+  Y+  + + +++IDMYA+ G + YA  VF +M  +NVVSWS +I  Y + 
Sbjct: 141 KMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQL 200

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
           G   E+L LF+  ++E  +   N  T+ SVL+ C     L+ G++IHG   +   DS   
Sbjct: 201 GEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCF 260

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM-IYH 385
           V S+L+++Y++CG +E    VF+ +  R++  WN+++ +   H +  K  ++F +M    
Sbjct: 261 VASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVG 320

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+  + I+F+ VL ACSHAGLVE+GK  FE M K++ I P  +HY+ MVDLLGRA KL +
Sbjct: 321 GMKANFITFLCVLYACSHAGLVEKGKYYFELM-KDYGIEPGTQHYSTMVDLLGRAGKLND 379

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A K+IE++ +EP   VWG+LL  CR+H N +LA   + R+ EL   ++G +V+L++ YAA
Sbjct: 380 AVKLIEEMPMEPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAA 439

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
           A  W+E  + ++++  RG++K  G S +E   ++++F + D  H +  +++  L  L  E
Sbjct: 440 AGRWEEAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEE 499

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           M + GYV  T  VL ++D EEK R +  HSE+LA+AFG I    G+ IR+ KNLR+C DC
Sbjct: 500 MDKAGYVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVCGDC 559

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H+  KFISK   + I+VRD NRFH F +G C+CGDYW
Sbjct: 560 HTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 596



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 161/358 (44%), Gaps = 24/358 (6%)

Query: 16  PYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNEL-IQSLCK-QGNLRQALDVLS 73
           PY +  I H  P  S+         +T  + +SS  +N+L + SL   +  LRQ +    
Sbjct: 71  PYSSLQIFHDSPHKSA---------TTWSSVISSFAQNDLPLLSLNYFRLMLRQGVP--- 118

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
               P  H +     SC   +SL  A  +H       +  D F+ + +I++Y+    +  
Sbjct: 119 ----PDDHIFPSATKSCGILSSLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICY 174

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A +VFD+   R +  W+ L       G  +E L L++R          + FT + VL+ C
Sbjct: 175 AHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVC 234

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
             S    +LL+ G+ IH    +  ++    + ++LI +Y++ G V  A  VF ++ V+N+
Sbjct: 235 GGS----TLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNL 290

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
             W+AM+   A++    +  ELF +M      +  N +T + VL AC+    +E+GK   
Sbjct: 291 GMWNAMLIACAQHAHTDKTFELFDKM-KSVGGMKANFITFLCVLYACSHAGLVEKGKYYF 349

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS-WNSLISSYGVHG 370
             +   G++      S +V +  R GKL     + + M      S W +L++   +HG
Sbjct: 350 ELMKDYGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLHG 407


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/555 (37%), Positives = 332/555 (59%), Gaps = 11/555 (1%)

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           +D  L T L+  Y+  + +  AR  FD  +   +  WNA+  A     R  E L L+ RM
Sbjct: 387 RDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERM 446

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                G+R    T+   L AC A     +    GK I + +   G  G   +    ++MY
Sbjct: 447 --LLEGVRPSVATFITALTACAAYP-PQTASAIGKRIQSLLEEAGLEGDTAVANATLNMY 503

Query: 233 ARFGCVMYAGFVFSQM--AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC-PN 289
           A+ G +  A  VF ++  A ++ ++W++M+A Y  +G+  EA ELF+ M  E+  L  PN
Sbjct: 504 AKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAM--EAEKLVKPN 561

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
            VT V+VL A  +  ++ QG+ IH  ++  G +S   + +AL+ MYA+CG L+  Q +FD
Sbjct: 562 KVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFD 621

Query: 350 HM--DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
               ++ DV++W SLI+ Y  +G   +A+++F  M   GV P+ ++F+S L AC+H G +
Sbjct: 622 KSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKL 681

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           E+G  L   M  +H I P+ +H++C+VDLLGR  +L+EA K++E    +     W +LL 
Sbjct: 682 EQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLD 740

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           +C+    +E  ER ++R+ +L+P  A +Y++LA +YAAA  W+E   +++ +  +G++  
Sbjct: 741 ACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRAD 800

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           PG S +EV ++++SF + D+ HP+ E+++  L  L   +K  GYV  T +VL+D+  E K
Sbjct: 801 PGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHK 860

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
           ER+++ HSEKLA+AFGL++T  G  +R+ KNLR+C DCH+ TK ISK   ++IL+RD +R
Sbjct: 861 ERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSR 920

Query: 648 FHHFRNGVCSCGDYW 662
           +HHF +G CSCGDYW
Sbjct: 921 YHHFTSGTCSCGDYW 935



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 213/439 (48%), Gaps = 43/439 (9%)

Query: 55  LIQSLCKQGNLRQALDVLS-IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           +I++  + G   +A+++   +E  P  H    L+ +C+   +L+    +HS ++D  F++
Sbjct: 115 MIRAWMEHGRPDKAMELFDRMEVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEE 174

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYR 170
           +  L   LI++YS   S+ DA+  FD+  R   R +  WNA+  A    G   E L+L+R
Sbjct: 175 NSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFR 234

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
            M+  G     +  T+  VL +CV +  G   L+  + IH  ++  G      + T L+D
Sbjct: 235 DMDRDGAP-PPNSVTFVSVLDSCVEA--GLLSLEDVRAIHGRIVGAGIEREAFVRTALVD 291

Query: 231 MYARFGCVMYAGFVF----SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            Y + G +  A  VF     +    ++V+ SAMI+   +NG   E+L LF  M +E    
Sbjct: 292 SYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTK- 350

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA---------LVTMYAR 337
            P+ VT+VSVL AC+ L    Q      ++L + ++    VVSA         L+T YAR
Sbjct: 351 -PSGVTLVSVLNACSML----QVGSATAFVLEQAME----VVSATRDNVLGTTLLTTYAR 401

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
              L   +  FD +   DVVSWN++ ++Y  H    +A+ +F+ M+  GV PS  +F++ 
Sbjct: 402 SNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITA 461

Query: 398 LGACSH-----AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           L AC+      A  +  GK + +S+ +E  +          +++  +   L +A  + E 
Sbjct: 462 LTACAAYPPQTASAI--GKRI-QSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFE- 517

Query: 453 LRIEPGPK---VWGSLLGS 468
            RI P  +    W S+L +
Sbjct: 518 -RISPARRDCITWNSMLAA 535



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 173/332 (52%), Gaps = 23/332 (6%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFD--QDPFLVTKLINVYSHFDSVDDARHVFD 139
           TY  LL +C    +L     +H+H+     D     FL + LI +++   ++ +A  + D
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALAD 104

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
             R  ++Y   A+ RA    GR ++ +EL+ RM      +R +      ++ AC   SC 
Sbjct: 105 --RFASVYSCTAMIRAWMEHGRPDKAMELFDRME-----VRPNCHALIALVNAC---SC- 153

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM---AVKNVVSW 256
              L  G+ IH+ +    +     +   LI MY++ G ++ A   F ++   + ++VV+W
Sbjct: 154 LGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTW 213

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC--AALAALEQGKMIHG 314
           +AMI+ + RNG A EAL+LFR+M  +     PNSVT VSVL +C  A L +LE  + IHG
Sbjct: 214 NAMISAFLRNGSAREALQLFRDMDRDGAPP-PNSVTFVSVLDSCVEAGLLSLEDVRAIHG 272

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVF----DHMDKRDVVSWNSLISSYGVHG 370
            I+  G++    V +ALV  Y + G L+    VF    D      +V+ +++IS+   +G
Sbjct: 273 RIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNG 332

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
           +  +++++F  M   G  PS ++ VSVL ACS
Sbjct: 333 WPQESLRLFFAMNLEGTKPSGVTLVSVLNACS 364



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 147/272 (54%), Gaps = 27/272 (9%)

Query: 193 CVASSCG-FSLLKHGKEIHASVLRHGYNGIVH--IMTTLIDMYARFGCVMYAGFVFSQMA 249
           C+  +CG    LK G+ +HA +L    +   H  + + LI M+A+ G +  A  +  + A
Sbjct: 48  CLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALADRFA 107

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
             +V S +AMI  +  +G   +A+ELF  M     ++ PN   +++++ AC+ L  L  G
Sbjct: 108 --SVYSCTAMIRAWMEHGRPDKAMELFDRM-----EVRPNCHALIALVNACSCLGNLAAG 160

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM---DKRDVVSWNSLISSY 366
           + IH  I  R  +    + +AL++MY++CG L   +  FD +    KRDVV+WN++IS++
Sbjct: 161 RRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAF 220

Query: 367 GVHGYGGKAIQIFKEMIYHGV-SPSPISFVSVLGACSHAGLVE-------EGKMLFESMR 418
             +G   +A+Q+F++M   G   P+ ++FVSVL +C  AGL+         G+++   + 
Sbjct: 221 LRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIE 280

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
           +E  +R +      +VD  G+   L++A ++ 
Sbjct: 281 REAFVRTA------LVDSYGKLGSLDDAWEVF 306



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 113/248 (45%), Gaps = 14/248 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T+  +L + T   S++    +H+ +  NGF+ D  +   L+N+Y+   S+DDA+ +
Sbjct: 560 PNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAI 619

Query: 138 FDK--TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
           FDK  + +  +  W +L       G+ E  L+L+  M     G+R +  T+   L AC  
Sbjct: 620 FDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQ--QQGVRPNHVTFISALTAC-- 675

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
            + G  L +  + +      HG        + ++D+  R G +  A  +  + +  +V++
Sbjct: 676 -NHGGKLEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVIT 734

Query: 256 WSAMI-ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC-AALAALEQGKMIH 313
           W A++ AC  +N    E  E   E IM+   L P   +   VL +  AA     +   I 
Sbjct: 735 WMALLDAC--KNSKELERGERCAERIMQ---LDPEVASSYIVLASMYAAAGRWNEAATIR 789

Query: 314 GYILRRGL 321
             +L +G+
Sbjct: 790 KTMLDKGI 797


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/544 (39%), Positives = 319/544 (58%), Gaps = 49/544 (9%)

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           T ++  Y+    ++ AR  FD    R++  WNA+       G  EE L L+  M G    
Sbjct: 109 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLG---- 164

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
             + R + T+                                       +I  Y R G +
Sbjct: 165 --AYRNSVTW-------------------------------------NAMISAYMRVGDL 185

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
             A  +F+ M  +NVV+W++MIA YA+NG +  A+ELF+EMI  +  L P+ VTMVSV+ 
Sbjct: 186 DSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMIT-AKKLTPDEVTMVSVIS 244

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           AC  L ALE G  +  ++    +   +   +A++ MY+RCG +E  + VF  M  RDVVS
Sbjct: 245 ACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS 304

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           +N+LIS +  HG+G +AI +   M   G+ P  ++F+ VL ACSHAGL+EEG+ +FES++
Sbjct: 305 YNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK 364

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
                 P+++HYACMVDLLGR  +LE+A + +E + +EP   V+GSLL + RIH  VEL 
Sbjct: 365 D-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELG 419

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRK 538
           E A+ +LFELEP N+GN++LL+++YA+A  W +V+R++  ++  G++K  G S +E   K
Sbjct: 420 ELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGK 479

Query: 539 MYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKL 598
           ++ F+  D  H + + ++ LLI L  +M+E GY+     VL D++ EEKE IV  HSEKL
Sbjct: 480 LHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKL 539

Query: 599 AVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSC 658
           A+ + L+ +  G  IR+ KNLR+C DCH+  K ISK   + I+VRD NRFH F +G+CSC
Sbjct: 540 AICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSC 599

Query: 659 GDYW 662
            DYW
Sbjct: 600 KDYW 603



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 150/311 (48%), Gaps = 47/311 (15%)

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           +V+ +Y +M G G  +R D F Y  ++K+      GF         HA VL+ G+     
Sbjct: 13  KVVLMYEQMQGCG--VRPDAFVYPILIKSAGTGGIGF---------HAHVLKLGHGSDAF 61

Query: 224 IMTTLIDMYARFGC---VMYAGF-----------VFSQMAVKNVVSWSAMIACYARNGMA 269
           +   +IDMYAR       M +G+           +F  M  +NV++W+AM+  YA+    
Sbjct: 62  VRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAK---- 117

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV- 328
            + LE  R       D  P      SV+   A L+   Q  +    +  R  D +L    
Sbjct: 118 VKDLEAARRYF----DCMPER----SVVSWNAMLSGYAQNGLAEEAL--RLFDEMLGAYR 167

Query: 329 -----SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
                +A+++ Y R G L+  + +F+ M  R+VV+WNS+I+ Y  +G    AI++FKEMI
Sbjct: 168 NSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMI 227

Query: 384 Y-HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
               ++P  ++ VSV+ AC H G +E G  +   +  E+ I+ S+  +  M+ +  R   
Sbjct: 228 TAKKLTPDEVTMVSVISACGHLGALELGNWVVRFL-TENQIKLSISGHNAMIFMYSRCGS 286

Query: 443 LEEAAKIIEDL 453
           +E+A ++ +++
Sbjct: 287 MEDAKRVFQEM 297



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 130/309 (42%), Gaps = 37/309 (11%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           ++    K  +L  A       P  +  ++  +L     +    +AL +   +   G  ++
Sbjct: 111 MVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEML--GAYRN 168

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
                 +I+ Y     +D AR +F+    R +  WN++       G+    +EL++ M  
Sbjct: 169 SVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM-- 226

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT-------- 226
               I + + T   V    V S+CG          H   L  G N +V  +T        
Sbjct: 227 ----ITAKKLTPDEVTMVSVISACG----------HLGALELG-NWVVRFLTENQIKLSI 271

Query: 227 ----TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
                +I MY+R G +  A  VF +MA ++VVS++ +I+ +A +G   EA+ L     M+
Sbjct: 272 SGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMS--TMK 329

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
              + P+ VT + VL AC+    LE+G+ +   I    +D      + +V +  R G+LE
Sbjct: 330 EGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDH----YACMVDLLGRVGELE 385

Query: 343 LGQCVFDHM 351
             +   + M
Sbjct: 386 DAKRTMERM 394



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 11/166 (6%)

Query: 53  NELIQSLCKQGNLRQALD-----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N +I    + G    A++     + + +  P + T   ++ +C H  +L     V   LT
Sbjct: 204 NSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLT 263

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
           +N           +I +YS   S++DA+ VF +   R +  +N L       G G E + 
Sbjct: 264 ENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAIN 323

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           L   M     GI  DR T+  VL AC  S  G  LL+ G+++  S+
Sbjct: 324 LMSTMK--EGGIEPDRVTFIGVLTAC--SHAG--LLEEGRKVFESI 363


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/615 (35%), Positives = 350/615 (56%), Gaps = 24/615 (3%)

Query: 62  QGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
            G+L+ +L + S      I PN  + T+   L +C   N+L   L +H      GF+   
Sbjct: 85  NGDLKGSLSLFSEMGRQGIYPN--EFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMV 142

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
            +   L+++YS    +++A  VF +   R++  WNA+      AG G + L+ +  M   
Sbjct: 143 EVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEA 202

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN--GIVHIMTTLIDMYA 233
               R D FT T +LKAC  SS G  ++  GK+IH  ++R G++      I  +L+D+Y 
Sbjct: 203 NIKERPDEFTLTSLLKAC--SSTG--MIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYV 258

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G +  A   F Q+  K ++SWS++I  YA+ G   EA+ LF+ +   +  +  +S  +
Sbjct: 259 KCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQI--DSFAL 316

Query: 294 VSVLQACAALAALEQGKMIHGYILR--RGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
            S++   A  A L QGK +    ++   GL++   V++++V MY +CG ++  +  F  M
Sbjct: 317 SSIIGVFADFALLRQGKQMQALAVKLPSGLET--SVLNSVVDMYLKCGLVDEAEKCFAEM 374

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
             +DV+SW  +I+ YG HG G K+++IF EM+ H + P  + +++VL ACSH+G+++EG+
Sbjct: 375 QLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGE 434

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
            LF  + + H I+P VEHYAC+VDLLGRA +L+EA  +I+ + I+P   +W +LL  CR+
Sbjct: 435 ELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRV 494

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H ++EL +   K L  ++  N  NYV+++++Y  A  W+E    + L   +GL+K  G S
Sbjct: 495 HGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMS 554

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK-GYVPQTKVVLYDLDAEEKERI 590
            +E++R+++ F S ++ HP    +   L      ++E+ GYV   K  L+D+D E KE  
Sbjct: 555 WVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEEN 614

Query: 591 VLGHSEKLAVAFGLIN---TSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
           +  HSEKLA+   L       KG+TIR+ KNLR+C DCH F K +SK      +VRD  R
Sbjct: 615 LRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVR 674

Query: 648 FHHFRNGVCSCGDYW 662
           FH F +G CSCGDYW
Sbjct: 675 FHSFEDGCCSCGDYW 689



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 167/340 (49%), Gaps = 9/340 (2%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           PN  Q+   +L + CT          VH +L  +G   +      LI++Y        A 
Sbjct: 3   PNQRQNLVSILRV-CTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAY 61

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            VFD    R +  W+AL     L G  +  L L+  M     GI  + FT++  LKAC  
Sbjct: 62  KVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG--RQGIYPNEFTFSTNLKACGL 119

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
                + L+ G +IH   L+ G+  +V +  +L+DMY++ G +  A  VF ++  ++++S
Sbjct: 120 ----LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLIS 175

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+AMIA +   G   +AL+ F  M   +    P+  T+ S+L+AC++   +  GK IHG+
Sbjct: 176 WNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGF 235

Query: 316 ILRRGL--DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
           ++R G    S   +  +LV +Y +CG L   +  FD + ++ ++SW+SLI  Y   G   
Sbjct: 236 LVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFV 295

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +A+ +FK +          +  S++G  +   L+ +GK +
Sbjct: 296 EAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQM 335



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 144/291 (49%), Gaps = 10/291 (3%)

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           I + R     +L+ C        L   G ++H  +L+ G    +     LIDMY +    
Sbjct: 2   IPNQRQNLVSILRVCTRKG----LSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREP 57

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
           + A  VF  M  +NVVSWSA+++ +  NG    +L LF EM      + PN  T  + L+
Sbjct: 58  LMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEM--GRQGIYPNEFTFSTNLK 115

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           AC  L ALE+G  IHG+ L+ G + ++ V ++LV MY++CG++   + VF  +  R ++S
Sbjct: 116 ACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLIS 175

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF--VSVLGACSHAGLVEEGKMLFES 416
           WN++I+ +   GYG KA+  F  M    +   P  F   S+L ACS  G++  GK +   
Sbjct: 176 WNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGF 235

Query: 417 MRKEHMIRPSVEHY-ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           + +     PS       +VDL  +   L  A K  + ++ E     W SL+
Sbjct: 236 LVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIK-EKTMISWSSLI 285



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 160/328 (48%), Gaps = 18/328 (5%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I      G   +ALD        +I+  P + T   LL +C+    +     +H  L
Sbjct: 177 NAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFL 236

Query: 107 TDNGF--DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
             +GF       +   L+++Y     +  AR  FD+ + +T+  W++L       G   E
Sbjct: 237 VRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVE 296

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
            + L++R+    + I S      + L + +     F+LL+ GK++ A  ++        +
Sbjct: 297 AMGLFKRLQELNSQIDS------FALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSV 350

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
           + +++DMY + G V  A   F++M +K+V+SW+ +I  Y ++G+  +++ +F EM+   H
Sbjct: 351 LNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEML--RH 408

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLEL 343
           ++ P+ V  ++VL AC+    +++G+ +   +L   G+   +   + +V +  R G+L+ 
Sbjct: 409 NIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKE 468

Query: 344 GQCVFDHMD-KRDVVSWNSLISSYGVHG 370
            + + D M  K +V  W +L+S   VHG
Sbjct: 469 AKHLIDTMPIKPNVGIWQTLLSLCRVHG 496


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/555 (36%), Positives = 332/555 (59%), Gaps = 11/555 (1%)

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           +D  L T L+  Y+  + +  AR  FD  +   +  WNA+  A     R  E L L+ RM
Sbjct: 253 RDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERM 312

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                G+R    T+   L AC A     +    GK I + +   G  G   +    ++MY
Sbjct: 313 --LLEGVRPSVATFITALTACAAYPPQ-TASAIGKRIQSLLEEAGLEGDTAVANATLNMY 369

Query: 233 ARFGCVMYAGFVFSQMAV--KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC-PN 289
           A+ G +  A  VF +++   ++ ++W++M+A Y  +G+  EA ELF+ M  E+  L  PN
Sbjct: 370 AKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAM--EAEKLVKPN 427

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
            VT V+VL A  +  ++ QG+ IH  ++  G +S   + +AL+ MYA+CG L+  Q +FD
Sbjct: 428 KVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFD 487

Query: 350 HM--DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
               ++ DV++W SL++ Y  +G   +A+++F  M   GV P+ I+F+S L AC+H G +
Sbjct: 488 KSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKL 547

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           E+G  L   M  +H I P+ +H++C+VDLLGR  +L+EA K++E    +     W +LL 
Sbjct: 548 EQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLD 606

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           +C+    +E  ER ++R+ +L+P  A +Y++LA +YAAA  W+E   +++ +  +G++  
Sbjct: 607 ACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRAD 666

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           PG S +EV ++++SF + D+ HP+ E+++  L  L   +K  GYV  T +VL+D+  E K
Sbjct: 667 PGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHK 726

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
           ER+++ HSEKLA+AFGL++T  G  +R+ KNLR+C DCH+ TK ISK   ++IL+RD +R
Sbjct: 727 ERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSR 786

Query: 648 FHHFRNGVCSCGDYW 662
           +HHF +G CSCGDYW
Sbjct: 787 YHHFTSGTCSCGDYW 801



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 199/419 (47%), Gaps = 42/419 (10%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           +E  P  H    L+ +C+   +L+    +HS ++D  F+++  L   LI++YS   S+ D
Sbjct: 1   MEVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLID 60

Query: 134 ARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           A+  FD+  R   R +  WNA+  A    G   E L+L+R M+  G     +  T+  VL
Sbjct: 61  AKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDG-APPPNSVTFVSVL 119

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF----S 246
            +CV +  G   L+  + IH  ++  G      + T L+D Y + G +  A  VF     
Sbjct: 120 DSCVEA--GLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSD 177

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
           +    ++V+ SAMI+   +NG   E+L LF  M +E     P+ VT+VSVL AC+ L   
Sbjct: 178 EEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTK--PSGVTLVSVLNACSMLPVG 235

Query: 307 EQGKMIHGYILRRGLDSILPVVSA---------LVTMYARCGKLELGQCVFDHMDKRDVV 357
                +        L+  + VVSA         L+T YAR   L   +  FD +   DVV
Sbjct: 236 SATAFV--------LEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVV 287

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH-----AGLVEEGKM 412
           SWN++ ++Y  H    +A+ +F+ M+  GV PS  +F++ L AC+      A  +  GK 
Sbjct: 288 SWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAI--GKR 345

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK---VWGSLLGS 468
           + +S+ +E  +          +++  +   L +A  + E  RI P  +    W S+L +
Sbjct: 346 I-QSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFE--RISPTRRDCITWNSMLAA 401



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 113/248 (45%), Gaps = 14/248 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T+  +L + T   S++    +H+ +  NGF+ D  +   L+N+Y+   S+DDA+ +
Sbjct: 426 PNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAI 485

Query: 138 FDK--TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
           FDK  + +  +  W +L       G+ E  L+L+  M     G+R +  T+   L AC  
Sbjct: 486 FDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQ--QQGVRPNHITFISALTAC-- 541

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
            + G  L +  + +      HG        + ++D+  R G +  A  +  + +  +V++
Sbjct: 542 -NHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVIT 600

Query: 256 WSAMI-ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC-AALAALEQGKMIH 313
           W A++ AC  +N    E  E   E IM+   L P   +   VL +  AA     +   I 
Sbjct: 601 WMALLDAC--KNSKELERGERCAERIMQ---LDPEVASSYIVLASMYAAAGRWNEAATIR 655

Query: 314 GYILRRGL 321
             +L +G+
Sbjct: 656 KTMLDKGI 663


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/516 (38%), Positives = 325/516 (62%), Gaps = 9/516 (1%)

Query: 134 ARHVFDKTRRR-TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           A  VF K  +   +++WN L R     G       LYR M  +G  +  D  TY +++KA
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGL-VEPDTHTYPFLIKA 130

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
                   + ++ G+ IH+ V+R G+  ++++  +L+ +YA  G V  A  VF +M  K+
Sbjct: 131 VTT----MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD 186

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           +V+W+++I  +A NG   EAL L+ EM   S  + P+  T+VS+L ACA + AL  GK +
Sbjct: 187 LVAWNSVINGFAENGKPEEALALYTEM--NSKGIKPDGFTIVSLLSACAKIGALTLGKRV 244

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           H Y+++ GL   L   + L+ +YARCG++E  + +FD M  ++ VSW SLI    V+G+G
Sbjct: 245 HVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFG 304

Query: 373 GKAIQIFKEM-IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
            +AI++FK M    G+ P  I+FV +L ACSH G+V+EG   F  MR+E+ I P +EH+ 
Sbjct: 305 KEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFG 364

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           CMVDLL RA ++++A + I+ + ++P   +W +LLG+C +H + +LAE A  ++ +LEP 
Sbjct: 365 CMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPN 424

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
           ++G+YVLL+++YA+   W +V+++++ +   G++KVPG S +EV  +++ F+  D+ HPQ
Sbjct: 425 HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQ 484

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
            + ++A L  ++  ++ +GYVPQ   V  D++ EEKE  V+ HSEK+A+AF LI+T +  
Sbjct: 485 SDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERS 544

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
            I + KNLR+C DCH   K +SK  N+EI+VRD +R
Sbjct: 545 PITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 144/299 (48%), Gaps = 17/299 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  HTY  L+ + T    +     +HS +  +GF    ++   L+++Y++   V  A  V
Sbjct: 119 PDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKV 178

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FDK   + +  WN++       G+ EE L LY  MN    GI+ D FT   +L AC    
Sbjct: 179 FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMN--SKGIKPDGFTIVSLLSACAK-- 234

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  GK +H  +++ G    +H    L+D+YAR G V  A  +F +M  KN VSW+
Sbjct: 235 --IGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-----KMI 312
           ++I   A NG   EA+ELF+ M   +  L P  +T V +L AC+    +++G     +M 
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYM-ESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMR 351

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
             Y +   ++        +V + AR G+++        M  + +VV W +L+ +  VHG
Sbjct: 352 EEYKIEPRIEHF----GCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/621 (33%), Positives = 348/621 (56%), Gaps = 35/621 (5%)

Query: 72  LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV 131
           +S   +PT    +  L S    N    A  +H+ +  +G +        LI+ Y     +
Sbjct: 1   MSFSHSPTVLALKSQLFSLGRKNPFI-AKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLL 59

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
            DA  +FD   ++    W  +  A  L+    +   +   +     G++ D F ++ ++K
Sbjct: 60  KDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSI--SLPILHEGLQPDHFVFSSLIK 117

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           AC  ++ G   +K GK++HA  L   +     + ++L+DMYA+F    Y   VF  +   
Sbjct: 118 AC--ANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFEL 175

Query: 252 NVVSWSAMIACYARNGMAFEALELFREM--------------IMESHDL----------- 286
           + +SW+AMI+ YAR+G   EALELFRE               +++S +            
Sbjct: 176 SSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEMR 235

Query: 287 -----CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
                  + + + SV+ ACA  A  E GK +H  ++  G +S L + +ALV MYA+C  +
Sbjct: 236 REGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDV 295

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
              + +F  M ++DVVSW S+I     HG   +A+ ++ +M+  GV P+ ++FV ++ AC
Sbjct: 296 VAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYAC 355

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SH GLV +G+ LF+SM ++  IRPS++HY C++DL  R+  L+EA  +I  + ++P    
Sbjct: 356 SHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPT 415

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W +LL +C+ H N ++A R +  L +L+P +  +Y+LL+++YA A MW+ V  V++L+  
Sbjct: 416 WAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGAGMWENVSMVRKLMAV 475

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           + ++KVPG S +++ R+   F + +   P  +++  L+  L +EM+ +GYVP T  VL D
Sbjct: 476 KEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDSEMRRRGYVPDTSSVLLD 535

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           +D +EKER +  HSE+LA+A+GL+    G TIRI KNLR+C DCH+  K IS   ++EI 
Sbjct: 536 MDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKLISAITSREIY 595

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           VRDV R+HHF++G CSC D+W
Sbjct: 596 VRDVKRYHHFKDGKCSCNDFW 616


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/576 (38%), Positives = 332/576 (57%), Gaps = 54/576 (9%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSH-LTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           P   T    + +CT+ + L     +H + +     D D  +   L++ Y+   SV+ AR 
Sbjct: 360 PNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARR 419

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY---------- 186
            F   ++  +  WNA+     L G  EE +EL   M   G  I  D  T+          
Sbjct: 420 KFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQG--IEPDIITWNGLVTGFTQY 477

Query: 187 ---------------------TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
                                T  +   +A+      LK GKEIH  VLR+       + 
Sbjct: 478 GDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVG 537

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
           + LI MY+    +  A  VFS+++ ++VV W+++I+  A++G +  AL+L REM + + +
Sbjct: 538 SALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVE 597

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           +  N+VTMVS L AC+ LAAL QGK IH +I+R GLD+   ++++L+ MY RCG ++  +
Sbjct: 598 V--NTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSR 655

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            +FD M +RD+VSWN +IS YG+HG+G  A+ +F+     G+ P+ I+F ++L ACSH+G
Sbjct: 656 RIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSG 715

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           L+EEG   F+ M+ E+ + P+VE YACMVDLL RA +  E  + IE +  EP   VWGSL
Sbjct: 716 LIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSL 775

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           LG+CRIHCN +LAE A++ LFELEP ++GNYVL+A++Y+AA  W++  +++ L++ RG+ 
Sbjct: 776 LGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVT 835

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
           K PG S IEVKRK++SFV  D  HP  EQ+                    K    D+D +
Sbjct: 836 KPPGCSWIEVKRKLHSFVVGDTSHPLMEQISG------------------KDGKLDVDED 877

Query: 586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           EKE  + GHSEK+A+AFGLI+T+ G  +RI KNLR+
Sbjct: 878 EKEFSLCGHSEKIALAFGLISTTXGTPLRIIKNLRV 913



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 220/497 (44%), Gaps = 93/497 (18%)

Query: 11  QLLRSPYHTNSIAHLPPK--------PSSVCCCVSLNSSTTPTSLSSRNKNELIQ----- 57
           +++ SP+  NS   + PK        P+  CC V+  ++ T       N  + I      
Sbjct: 2   EIITSPFALNSNFAIQPKGTSPLQTLPTRNCCIVASTNTKTQNLRKLTNARQRITGFSGG 61

Query: 58  -SLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
            S+ + G L  A  +LS      P+     Y  +L  C    +L     VH+ L  NG D
Sbjct: 62  GSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVD 121

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
              FL ++L+ VY     V+DAR +FDK   R ++ W A+       G  EE ++L+  M
Sbjct: 122 VCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLM 181

Query: 173 NGTGTGIRSDRFT--------------------YTYVL------KACVASS-------CG 199
                G+R D F                     Y Y+L       +CV  S       CG
Sbjct: 182 --VNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCG 239

Query: 200 --------FSLLKHGKEIHASVLRHGY------------------NGIVHIMTT---LID 230
                   F  ++       +++  GY                  +G+     T   +I 
Sbjct: 240 RMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIIS 299

Query: 231 MYARFGCVMYAGFVFSQMA-----VKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
            YA+ G    A   F +M        NVVSW+A+IA   +NG  FEAL +FR+M++E   
Sbjct: 300 GYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG-- 357

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELG 344
           + PNS+T+ S + AC  L+ L  G+ IHGY ++   LDS L V ++LV  YA+C  +E+ 
Sbjct: 358 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVA 417

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           +  F  + + D+VSWN++++ Y + G   +AI++  EM + G+ P  I++  ++   +  
Sbjct: 418 RRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQY 477

Query: 405 GLVEEGKMLFESMRKEH 421
           G   +GK   E  ++ H
Sbjct: 478 G---DGKAALEFFQRMH 491



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 152/323 (47%), Gaps = 14/323 (4%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+    + G+ + AL+      S+  +P   T    L +C    +L     +H ++  
Sbjct: 468 NGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLR 527

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           N  +    + + LI++YS  DS++ A  VF +   R + VWN++  A   +GR    L+L
Sbjct: 528 NHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDL 587

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            R MN +   + +   T    L AC       + L+ GKEIH  ++R G +    I+ +L
Sbjct: 588 LREMNLSNVEVNT--VTMVSALPACSK----LAALRQGKEIHQFIIRCGLDTCNFILNSL 641

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY R G +  +  +F  M  +++VSW+ MI+ Y  +G   +A+ LF+     +  L P
Sbjct: 642 IDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQX--FRTMGLKP 699

Query: 289 NSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           N +T  ++L AC+    +E+G K          +D  +   + +V + +R G+       
Sbjct: 700 NHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEF 759

Query: 348 FDHMD-KRDVVSWNSLISSYGVH 369
            + M  + +   W SL+ +  +H
Sbjct: 760 IEKMPFEPNAAVWGSLLGACRIH 782



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 123/232 (53%), Gaps = 2/232 (0%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L+ G ++HA ++ +G +    + + L+++Y + GCV  A  +F +M+ +NV SW+A++  
Sbjct: 105 LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 164

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           Y   G   E ++LF  M+ E   + P+      V +AC+ L     GK ++ Y+L  G +
Sbjct: 165 YCGLGDYEETIKLFYLMVNEG--VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFE 222

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
               V  +++ M+ +CG++++ +  F+ ++ +DV  WN ++S Y   G   KA++   +M
Sbjct: 223 GNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDM 282

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
              GV P  +++ +++   + +G  EE    F  M      +P+V  +  ++
Sbjct: 283 KLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALI 334



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 11/196 (5%)

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           RNG+   A  L   M + + D C       S+LQ C  L  L  G  +H  ++  G+D  
Sbjct: 66  RNGVLNNAAMLLSSMDLTNPDECIE--IYASILQKCRKLYNLRLGFQVHAQLVVNGVDVC 123

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
             + S L+ +Y + G +E  + +FD M +R+V SW +++  Y   G   + I++F  M+ 
Sbjct: 124 EFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVN 183

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC----MVDLLGRA 440
            GV P    F  V  ACS       GK ++     ++M+    E  +C    ++D+  + 
Sbjct: 184 EGVRPDHFVFPKVFKACSELKNYRVGKDVY-----DYMLSIGFEGNSCVKGSILDMFIKC 238

Query: 441 NKLEEAAKIIEDLRIE 456
            +++ A +  E++  +
Sbjct: 239 GRMDIARRFFEEIEFK 254


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/529 (37%), Positives = 323/529 (61%), Gaps = 8/529 (1%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR +FDK   R +  WNA+   LT  G  E+ L+ +  M   G  +  D F    V + C
Sbjct: 127 ARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREG--MHPDEFGLGSVFRCC 184

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                G   +  G+++HA V+R G +  + +  +L  MY R GC+     V   +    +
Sbjct: 185 A----GLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTI 240

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           VS++  IA   +NG +  ALE F   +M   ++ P+ VT VS +  C+ LAAL QG+ +H
Sbjct: 241 VSFNTTIAGRTQNGDSEGALEYFS--MMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVH 298

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             +++ G+D ++PV+++LV MY+RCG L   + V+D     D+   +++IS+ G HG G 
Sbjct: 299 AQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGH 358

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           KA+++FK+M+  G  P+ ++F+++L ACSH+GL +EG   FE M K +  +PSV+HY C+
Sbjct: 359 KAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCI 418

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLLGR+  L+EA  +I  + +     +W +LL +C+   N ++AER ++R+ E +P ++
Sbjct: 419 VDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDS 478

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
             YVLL+++ A +  W +V  V++++  + ++K PG S +E K +++ F + D+ HP+  
Sbjct: 479 APYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQG 538

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
           ++   L  +  ++++ GY P   +V +D++ EEKE  +  HSEKLA+AF  +N  +G  I
Sbjct: 539 EIDEYLKEMMGKIRQCGYAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPI 598

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+ KNLR+C+DCH   K IS+   +EI+VRDV+RFHHFR+G CSCGDYW
Sbjct: 599 RVMKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 125/274 (45%), Gaps = 23/274 (8%)

Query: 20  NSIAHLPPKPSSVCCCVSLNSSTTPT--SLSSRNKNELIQSLCKQGNLRQALDVLS---- 73
           NS+AH+  +    C C++   +      SL+  + N  I    + G+   AL+  S    
Sbjct: 213 NSLAHMYMR----CGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRG 268

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           +E  P   T+   +  C+   +L+    VH+ +   G D+   ++T L+++YS    + D
Sbjct: 269 VEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGD 328

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR-MNGTGTGIRSDRFTYTYVLKA 192
           +  V+D      +++ +A+  A    G+G + +EL+++ MNG   G   +  T+  +L A
Sbjct: 329 SERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNG---GAEPNEVTFLALLYA 385

Query: 193 CVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           C  S     L   G E    + + +G+   V     ++D+  R GC+  A  +   M V+
Sbjct: 386 CSHS----GLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVR 441

Query: 252 -NVVSWSAMI-ACYARNGMAFEALELFREMIMES 283
            + V W  ++ AC  +    F+  E   E ++ES
Sbjct: 442 ADGVIWKTLLSACKTQKN--FDMAERIAERVIES 473



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           + +AC A+  L Q   +H +    G  +     + L+  YA  G L   + +F+ + KR+
Sbjct: 51  IFRACRAIPLLRQ---LHAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLFEGISKRN 107

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           V+SWN LI     +G  G A ++F +M    V+    ++ +++   ++ GL E+    F 
Sbjct: 108 VMSWNILIGGCIKNGDLGSARELFDKMPTRNVA----TWNAMVAGLTNVGLDEDSLQFFL 163

Query: 416 SMRKEHM 422
           +MR+E M
Sbjct: 164 AMRREGM 170


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/518 (41%), Positives = 313/518 (60%), Gaps = 15/518 (2%)

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           W AL  A   AG   E + + RR     +G+R D FT   VL AC       + L+ G+ 
Sbjct: 9   WTALIAAYMDAGHALEAIGVARR--AFASGMRPDSFTAVRVLTACAR----VADLETGEA 62

Query: 209 IHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
           + A+  +  G    V + T  +D+Y + G +  A  VF +M  ++ V+W AM+  YA NG
Sbjct: 63  VWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNG 122

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL-- 325
              EAL+LF  M ME     P+  T+V  L AC  L AL+ G+   G +     D +L  
Sbjct: 123 HPREALDLFFAMQMEGAK--PDCYTVVGALSACTRLGALDLGRQAVGMV---HWDEVLGN 177

Query: 326 PVV-SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           PV+ +AL+ MYA+CG       VF  M +RD++ WN++I   G+ G+   A  +  +M  
Sbjct: 178 PVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKK 237

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            GV  +  +F+ +L +C+H GLV +G+  F +M   + I P +EHY CMVDL  RA  LE
Sbjct: 238 SGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLE 297

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
           EA ++I D+ +     VWG+LLG C+IH N +LAE A K+L  LEP N+GNYV+L+++Y+
Sbjct: 298 EAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYS 357

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
            +  W++  +++  ++A+G++KVP  S +E+  K++ F   D+ HP  ++++A L  L  
Sbjct: 358 NSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGM 417

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           EMK  GY P T+VV++D++ EEKE  ++ HSEK+A+AF LI T  GETIR+TKNLR+C D
Sbjct: 418 EMKAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTD 477

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CHS  K IS+   +EI+VRD NRFH FR+G CSC DYW
Sbjct: 478 CHSAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 111/216 (51%), Gaps = 5/216 (2%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           + VSW+A+IA Y   G A EA+ + R     +  + P+S T V VL ACA +A LE G+ 
Sbjct: 5   STVSWTALIAAYMDAGHALEAIGVARRAF--ASGMRPDSFTAVRVLTACARVADLETGEA 62

Query: 312 IHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
           +     +  G+   + V +A + +Y +CG++E  + VFD M  RD V+W +++  Y  +G
Sbjct: 63  VWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNG 122

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
           +  +A+ +F  M   G  P   + V  L AC+  G ++ G+     +  + ++   V   
Sbjct: 123 HPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGT 182

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           A ++D+  +     EA  + + + +E    VW +++
Sbjct: 183 A-LIDMYAKCGSTSEAWMVFQQM-LERDIIVWNAMI 216



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 115/282 (40%), Gaps = 18/282 (6%)

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
           + G  +  F+ T  +++Y     ++ AR VFD+ + R    W A+       G   E L+
Sbjct: 70  EEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALD 129

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+  M   G   + D +T    L AC         L  G++    V      G   + T 
Sbjct: 130 LFFAMQMEGA--KPDCYTVVGALSACTR----LGALDLGRQAVGMVHWDEVLGNPVLGTA 183

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           LIDMYA+ G    A  VF QM  ++++ W+AMI      G    A  L  +M      L 
Sbjct: 184 LIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKL- 242

Query: 288 PNSVTMVSVLQACAALAALEQGK-----MIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
            N  T + +L +C     +  G+     M H Y +   ++        +V +++R G LE
Sbjct: 243 -NDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHY----GCMVDLFSRAGLLE 297

Query: 343 LG-QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
              Q + D     + V W +L+    +H     A    K++I
Sbjct: 298 EAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLI 339



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M     VSW +LI++Y   G+  +AI + +     G+ P   + V VL AC+    +E G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           + ++ + R+E  +  SV      +DL  +  ++E+A  + ++++       WG+++G 
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMK-NRDAVAWGAMVGG 117



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 12/213 (5%)

Query: 55  LIQSLCKQGNLRQALDV---LSIE-PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           ++      G+ R+ALD+   + +E   P  +T    L +CT   +L         +  + 
Sbjct: 114 MVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDE 173

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              +P L T LI++Y+   S  +A  VF +   R I VWNA+   L + G  +    L  
Sbjct: 174 VLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVG 233

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE-IHASVLRHGYNGIVHIMTTLI 229
           +M  +G  +  +  T+  +L +C  +     L+  G++  H     +  +  +     ++
Sbjct: 234 QMKKSGVKLNDN--TFIGLLCSCTHT----GLVNDGRQYFHNMTHVYRISPRIEHYGCMV 287

Query: 230 DMYARFGCVMYAGFVFSQMA-VKNVVSWSAMIA 261
           D+++R G +  A  +   M  + N V W A++ 
Sbjct: 288 DLFSRAGLLEEAHQLIGDMPMLANAVVWGALLG 320


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/635 (36%), Positives = 353/635 (55%), Gaps = 73/635 (11%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDKTRRRTIYVWNA 151
            SL+    +H+++   G + DPF+  KL++    S  DS+D A  +F  T    +++ N 
Sbjct: 16  KSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNT 75

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           L R L  + R ++ L  +  M         D F++ +++KA    +     ++ G ++H 
Sbjct: 76  LIRGLYESDRPQDSLLKFIEMRRNSFS-PPDSFSFAFIVKA----AANLRSVRVGIQLHC 130

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFG---------------------------C------- 237
             L HG +  + + TTLI MY   G                           C       
Sbjct: 131 QALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKG 190

Query: 238 -----------------VMYAGF-----------VFSQMAVKNVVSWSAMIACYARNGMA 269
                            VM AG+           +F +M +K+ VSWS MI  +A NG  
Sbjct: 191 GRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYF 250

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329
            EA   FRE+  +   + PN  ++  VL ACA   ALE GK++HG+I + GL  I+ V +
Sbjct: 251 EEAFSFFREL--QRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNN 308

Query: 330 ALVTMYARCGKLELGQCVFDH-MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           AL+  Y++CG + + Q VF+  M++R++VSW S++++  +HG+G +AI IF +M   G+ 
Sbjct: 309 ALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIR 368

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
           P  I+F+S+L ACSHAGLVE+G   F+ M+  + I PS+EHY CMVDL GRA +L++A +
Sbjct: 369 PDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYE 428

Query: 449 IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
            +  + I     +W +LLG+C +H +V+LAE+  +RL EL+P N+ ++VLL++ YA A  
Sbjct: 429 FVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGK 488

Query: 509 WDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK- 567
           W +   V+R +  + + K PG S IEV + MY+F++  + +   E+ +  L  +   ++ 
Sbjct: 489 WKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRV 548

Query: 568 EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHS 627
           E GYVP+   VL+D++ EEKE  V  HSEKLAVAFG+    KG TIRI KNLR+C DCH+
Sbjct: 549 EGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLRICRDCHA 608

Query: 628 FTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             K IS+    EI+VRD +RFH F++G CSC DYW
Sbjct: 609 VMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/588 (37%), Positives = 334/588 (56%), Gaps = 21/588 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   ++  C     + +   +H      GF  D F+   L+N+YS    +D AR V
Sbjct: 110 PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKV 169

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    + + +WN+L       G  +  L+L+  M         D F++T ++     S 
Sbjct: 170 FDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMP------ERDAFSWTVLVDG--LSK 221

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
           CG  +    K       R+  +        +I+ Y + G    A  +F QM + ++V+W+
Sbjct: 222 CG-KVESARKLFDQMPCRNLVS-----WNAMINGYMKSGDFDSALELFYQMPIWDLVTWN 275

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            MIA Y  NG   +A+++F  M+       P+  T+VSVL A + LA L +G+ IH Y+ 
Sbjct: 276 LMIAGYELNGQFMDAVKMFFMMLKLGSR--PSHATLVSVLSAVSGLAVLGKGRWIHSYME 333

Query: 318 RRG--LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           + G  LD IL   ++L+ MYA+CG +E    VF  + K+ V  W ++I   G+HG    A
Sbjct: 334 KNGFELDGILG--TSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHA 391

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           + +F EM   G+ P+ I F+ VL AC+HAGLV++G+  F+ M  E+ I P++EHY C+VD
Sbjct: 392 LALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVD 451

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495
           +L RA  LEEA   IE++ I P   +W SLLG  R H  +++ E A++R+ E+ P   G 
Sbjct: 452 ILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGC 511

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           Y+LL+++YAA+ MW++V  V+ ++  RG +K PG S +E K  ++ F+  D  HPQ +++
Sbjct: 512 YILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEI 571

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAE-EKERIVLGHSEKLAVAFGLINTSKGETIR 614
           +A +  +  ++K  G+VP T  VL  ++ E EKE  +  HSE+LA+AFGLIN   G  IR
Sbjct: 572 YAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIR 631

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I KNLR+C DCHS TK +SK  ++EI+VRD  RFHHF+NG CSC DYW
Sbjct: 632 IMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 117/213 (54%), Gaps = 9/213 (4%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYA--RFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           +++HA  L+        + + L+ +Y+  +   + YA  +F ++  ++++ W+ +I CY 
Sbjct: 30  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 89

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
            N  + + + LF E++   H+  P++ T+  V++ CA L  +++GK IHG  L+ G  S 
Sbjct: 90  ENQFSHDGIVLFHELV---HEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSD 146

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + V  +LV MY++CG+++  + VFD M  +DVV WNSLI  Y   G    A+Q+F+EM  
Sbjct: 147 VFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM-- 204

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
                   S+  ++   S  G VE  + LF+ M
Sbjct: 205 --PERDAFSWTVLVDGLSKCGKVESARKLFDQM 235



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 150/307 (48%), Gaps = 19/307 (6%)

Query: 115 PFLVTKLINVYS--HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           PF+ ++L+ +YS    + +  AR +FD+ +RR++  WN + +         + + L+  +
Sbjct: 45  PFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL 104

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                    D FT   V+K C        +++ GK+IH   L+ G+   V +  +L++MY
Sbjct: 105 VHE---YLPDNFTLPCVIKGCAR----LGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMY 157

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           ++ G +  A  VF  M  K+VV W+++I  YAR G    AL+LF EM         ++ +
Sbjct: 158 SKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPER------DAFS 211

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
              ++   +    +E  + +   +  R L S     +A++  Y + G  +    +F  M 
Sbjct: 212 WTVLVDGLSKCGKVESARKLFDQMPCRNLVSW----NAMINGYMKSGDFDSALELFYQMP 267

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
             D+V+WN +I+ Y ++G    A+++F  M+  G  PS  + VSVL A S   ++ +G+ 
Sbjct: 268 IWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRW 327

Query: 413 LFESMRK 419
           +   M K
Sbjct: 328 IHSYMEK 334



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           +L +   P+  T   +L + +    L     +HS++  NGF+ D  L T LI +Y+    
Sbjct: 297 MLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGC 356

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           ++ A  VF   +++ +  W A+   L + G     L L+  M    TG++ +   +  VL
Sbjct: 357 IESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEM--CKTGLKPNAIIFIGVL 414

Query: 191 KAC 193
            AC
Sbjct: 415 NAC 417


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/647 (34%), Positives = 353/647 (54%), Gaps = 44/647 (6%)

Query: 53  NELIQSLCKQGNLRQA----LDVLS-IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N LI++     +  Q+    LD+L   E  P + T+  ++ + +   +      VH    
Sbjct: 94  NTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAI 153

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
              F  D +++  L+  Y     +  A  +F     + +  WN++  A       E+ LE
Sbjct: 154 KLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALE 213

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           L+ +M      +  +  T   VL AC         L+ G+ + + + R G    + +   
Sbjct: 214 LFLKMEREN--VMPNSVTMVGVLSACAKKLD----LEFGRWVCSYIERKGIKVDLTLCNA 267

Query: 228 LIDMYARFGCV--------------------MYAGF-----------VFSQMAVKNVVSW 256
           ++DMY + G V                    M  G+           VF+ M VK + +W
Sbjct: 268 MLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAW 327

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + +I+ Y +NG   EAL +F E+ + S    P+ VT+VS L ACA L A++ G  IH YI
Sbjct: 328 NVLISAYEQNGKPKEALAIFNELQL-SKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYI 386

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
            R G+     ++S+LV MYA+CG LE    VF  +++RDV  W+++I+  G+HG G  AI
Sbjct: 387 KREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAI 446

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F EM    V P+ ++F +VL ACSHAGLV+EG++ F  M   + + P ++HYACMVD+
Sbjct: 447 DLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDI 506

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA  LEEA ++I ++   P   VWG+LLG+C +H NVEL E AS +L +LEP N G  
Sbjct: 507 LGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAI 566

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++YA    W++V  +++L+    L+K PG S IE    ++ F+  D  HP    ++
Sbjct: 567 VLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIY 626

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEE-KERIVLGHSEKLAVAFGLINTSKGETIRI 615
           + L  ++ ++K  GY P    +L  ++ ++ KE+ +  HSEKLA+AFGL+  +  + IR+
Sbjct: 627 SKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRV 686

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C DCH+F K +S+  +++IL+RD  RFHHFR+G CSC DYW
Sbjct: 687 VKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 204/405 (50%), Gaps = 43/405 (10%)

Query: 102 VHSHLTDNGFDQDPFLVTKLI--NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
           VH+ +   G   DPF  +KL   +  S F ++D AR++FD+  +  +Y WN L RA   +
Sbjct: 44  VHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASS 103

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
               +   ++  +      +  ++FT+ +V+KA  AS    S  + G  +H   ++  + 
Sbjct: 104 SDPFQSFVIFLDLLDKCEDL-PNKFTFPFVIKA--ASELKAS--RVGTAVHGMAIKLSFG 158

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             ++I+ +L+  Y   G +  A  +F  ++ K+VVSW++MI+ +A+     +ALELF  +
Sbjct: 159 MDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELF--L 216

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
            ME  ++ PNSVTMV VL ACA    LE G+ +  YI R+G+   L + +A++ MY +CG
Sbjct: 217 KMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCG 276

Query: 340 KLELGQCVFDHMDKRDVVS-------------------------------WNSLISSYGV 368
            ++  Q +FD M +RDV S                               WN LIS+Y  
Sbjct: 277 SVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQ 336

Query: 369 HGYGGKAIQIFKEMIYHGVS-PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           +G   +A+ IF E+    ++ P  ++ VS L AC+  G ++ G  +   +++E ++  + 
Sbjct: 337 NGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVL-NC 395

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
              + +VD+  +   LE+A ++   +  E    VW +++    +H
Sbjct: 396 HLISSLVDMYAKCGSLEKALEVFYSVE-ERDVYVWSAMIAGLGMH 439


>gi|302800503|ref|XP_002982009.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
 gi|300150451|gb|EFJ17102.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
          Length = 604

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/583 (37%), Positives = 338/583 (57%), Gaps = 17/583 (2%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  LLL+C    +L +   +H+ +   G     FL   ++ +Y     ++D    F + +
Sbjct: 36  YLDLLLACGRSRNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSEMK 95

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           RR I  WNA+  A     R  + + ++ RM     GI+    T+T VL A      G  L
Sbjct: 96  RRNIVSWNAVISAYAQNDRSSDAIVIFLRM--LLDGIQPSYVTFTSVLNAFA----GPEL 149

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
            +  K +H   L  G+     + T L++MY++ G +  A  VF ++A+K+VVSWS MIA 
Sbjct: 150 HRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAA 209

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           YA+ G   EALE+F  M  ++  +  N +T V+V+ AC  +A +   + IH  I+  GL+
Sbjct: 210 YAQTGHGTEALEMFHRM--DAEGIQANVITFVAVVHACVLVARITDARTIHRRIIEAGLE 267

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
           S   + +AL+ MY +CG L   + +FD + +RDVV W++++ +Y  HG+   A+++F  M
Sbjct: 268 SNTVLGTALLNMYGKCGGLPEAKKIFDKLTERDVVVWSAILEAYARHGHPRVALKLFTLM 327

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              GV P+ ++FV VL AC H G V EG+  F S+ ++H +RP+  H  CM+D+LGRA K
Sbjct: 328 QQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRAGK 387

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           LEEA   I  + ++     W   LGSCR + ++E  +RA++++FE  P     Y+ LA +
Sbjct: 388 LEEAESFIARMPVKEEAITWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTLASM 447

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           Y  A M +E + V RL+E+R  +K PG S+I V+ +++ F    ++HPQ +++++ L  L
Sbjct: 448 YTDAGMPEEAEAVARLMESRCPKKEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSYLDVL 507

Query: 563 SAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT--SKGETIRITKNLR 620
            A   E GYVP T+ +L  L + E++     HSE+LA+AFG ++    +   I I KNLR
Sbjct: 508 HARALELGYVPDTRPLL--LGSVERKL----HSERLALAFGAMSVPGKRNSPIHIIKNLR 561

Query: 621 LCEDCHSFTKFISK-FANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH FTKF+S+    +EI+VRD +RFH F++GVCSCGDYW
Sbjct: 562 VCRDCHEFTKFVSRTMEGREIIVRDTSRFHLFKDGVCSCGDYW 604



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 16/217 (7%)

Query: 53  NELIQSLCKQGNLRQAL------DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           + +I +  + G+  +AL      D   I+ N    T+  ++ +C     ++DA  +H  +
Sbjct: 204 SNMIAAYAQTGHGTEALEMFHRMDAEGIQANVI--TFVAVVHACVLVARITDARTIHRRI 261

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
            + G + +  L T L+N+Y     + +A+ +FDK   R + VW+A+  A    G     L
Sbjct: 262 IEAGLESNTVLGTALLNMYGKCGGLPEAKKIFDKLTERDVVVWSAILEAYARHGHPRVAL 321

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIM 225
           +L+  M     G+R +  T+  VL+AC    C    +  G+   AS++R H      H +
Sbjct: 322 KLFTLMQ--QEGVRPNDVTFVGVLEAC----CHGGFVPEGRFHFASLVRDHELRPTAHHV 375

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMIA 261
             ++DM  R G +  A    ++M VK   ++WS  + 
Sbjct: 376 HCMLDMLGRAGKLEEAESFIARMPVKEEAITWSIFLG 412


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/539 (38%), Positives = 329/539 (61%), Gaps = 9/539 (1%)

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +Y    +V DARHVFDK   R +  W  L           E + L   M       R + 
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDM--LRARFRPNG 58

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           FT+T +LKA    +CG   +  G+++HA  +++ ++  V++ + L+DMYAR   +  A  
Sbjct: 59  FTFTSLLKA--TGACGGCSI--GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIM 114

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF ++  KN VSW+A+IA +AR       L  F EM  + +       T  S+  A A +
Sbjct: 115 VFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEM--QRNGFGATHFTYSSMFSAFARI 172

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
            ALEQG+ +H ++++ G      V + ++ MYA+ G +   + VFD MDKRD+V+WN+++
Sbjct: 173 GALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTML 232

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           ++   +G G +A+  F+E+   G+  + I+F+SVL ACSH GLV+EGK  F+ M K++ +
Sbjct: 233 TALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNV 291

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
           +P ++HY   VDLLGRA  L+EA   +  + +EP   VWG+LLG+CR+H N ++ + A+ 
Sbjct: 292 QPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAAD 351

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
            +FEL+P + G  VLL ++YA+   W++  RV+++++A G++K P  S ++++  ++ FV
Sbjct: 352 HVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFV 411

Query: 544 SVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFG 603
           + D+ HP+   ++ +   ++  +K+ GYVP T  VL  ++ +E+E  +  HSEK+A+AF 
Sbjct: 412 ADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFA 471

Query: 604 LINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           LIN   G +IRI KN+R+C DCHS  K++SK   +EI+VRD NRFHHF  G CSCGDYW
Sbjct: 472 LINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 139/305 (45%), Gaps = 17/305 (5%)

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
           D+L     P   T+  LL +       S    +H+      +D+D ++ + L+++Y+  +
Sbjct: 48  DMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCE 107

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYV 189
            +D A  VFD+   +    WNAL         GE  L  +  M   G G  +  FTY+ +
Sbjct: 108 QMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFG--ATHFTYSSM 165

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
             A          L+ G+ +HA +++ G      +  T++ MYA+ G ++ A  VF +M 
Sbjct: 166 FSAFAR----IGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMD 221

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            +++V+W+ M+   A+ G+  EA+  F E+      L  N +T +SVL AC+    +++G
Sbjct: 222 KRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQL--NQITFLSVLTACSHGGLVKEG 279

Query: 310 K----MIHGYILRRGLDSILPVVSALVTMYARCGKL-ELGQCVFDHMDKRDVVSWNSLIS 364
           K    M+  Y ++  +D  +  V  L     R G L E    VF    +     W +L+ 
Sbjct: 280 KHYFDMMKDYNVQPEIDHYVSFVDLL----GRAGLLKEALIFVFKMPMEPTAAVWGALLG 335

Query: 365 SYGVH 369
           +  +H
Sbjct: 336 ACRMH 340


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/552 (38%), Positives = 322/552 (58%), Gaps = 13/552 (2%)

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           DPF+    +++Y     +  ARH+F +   R +  WNA+     L GR  E +E Y  + 
Sbjct: 153 DPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLR 212

Query: 174 GTGTGIRSDRFTYTYVLKACV--ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
             G G+ +       V+ AC    +  G   L  G++ H  V++ G+   V ++ +++D 
Sbjct: 213 EAG-GLPN-------VVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDF 264

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           Y +  C   A  VF  M V+N VSW +M+A YA+NG   EA   +        +  P   
Sbjct: 265 YGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEE--PTDF 322

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
            + S L  CA L  L  G+ +H   +R  +D+ + V SALV MY +CG +E  + +F   
Sbjct: 323 MVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYET 382

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEG 410
            +R++V+WN++I  Y   G    A+ +F +MI  G  +P+ I+ V+V+ +CS  GL ++G
Sbjct: 383 PQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDG 442

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
             LFE+MR+   I P  EHYAC+VDLLGRA   E+A ++I+ + + P   VWG+LLG+C+
Sbjct: 443 YELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACK 502

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
           +H   EL   A+++LFEL+P ++GN+VLL++++A+A  W E   +++ ++  G++K PG 
Sbjct: 503 MHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGC 562

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S +  K  ++ F + D  H  + ++ ALL  L  +M+  GY+P T+  LYDL+ EEKE  
Sbjct: 563 SWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESE 622

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           V  HSEKLA+AFGLI    G  IRI KNLR+C DCH   KFIS    +EI+VRD NRFHH
Sbjct: 623 VFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHH 682

Query: 651 FRNGVCSCGDYW 662
           F+   CSCGDYW
Sbjct: 683 FKQYQCSCGDYW 694



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 156/337 (46%), Gaps = 9/337 (2%)

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
           PF+   L+N+YS  D    A          T+  + A        GR    L  +  M  
Sbjct: 51  PFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGM-- 108

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT-TLIDMYA 233
              G+R + FT+    KA  ++    ++   G +IH+  +R GY  +   ++   +DMY 
Sbjct: 109 LRLGLRPNDFTFPSAFKAAASAPPRSTI---GPQIHSLAIRFGYLPVDPFVSCAALDMYF 165

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G +  A  +F +M  +NVV+W+A++     +G   E +E +  +  E+  L PN V+ 
Sbjct: 166 KTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGL-REAGGL-PNVVSA 223

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
            +   ACA    L  G+  HG++++ G +  + V++++V  Y +C      + VFD M  
Sbjct: 224 CAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGV 283

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           R+ VSW S++++Y  +G   +A   +      G  P+     S L  C+    +  G+ L
Sbjct: 284 RNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRAL 343

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
             ++     I  ++   + +VD+ G+   +E+A +I 
Sbjct: 344 -HAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIF 379



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 126/284 (44%), Gaps = 9/284 (3%)

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
           +C     LS     H  +   GF+ D  ++  +++ Y        AR VFD    R    
Sbjct: 229 ACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVS 288

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           W ++  A    G  EE    Y  +    +G     F  +  L  C     G   L  G+ 
Sbjct: 289 WCSMVAAYAQNGAEEEAFAAY--LGARRSGEEPTDFMVSSALTTCA----GLLGLHLGRA 342

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           +HA  +R   +  + + + L+DMY + GCV  A  +F +   +N+V+W+AMI  YA  G 
Sbjct: 343 LHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGD 402

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPV 327
           A  AL +F +MI  S +  PN +T+V+V+ +C+     + G  +   +  R G++     
Sbjct: 403 AQNALLVFDDMI-RSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEH 461

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVS-WNSLISSYGVHG 370
            + +V +  R G  E    V   M  R  +S W +L+ +  +HG
Sbjct: 462 YACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHG 505



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 10/189 (5%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PT       L +C     L     +H+    +  D + F+ + L+++Y     V+DA  +
Sbjct: 319 PTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQI 378

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F +T +R +  WNA+       G  +  L ++  M      IRS      Y+    V +S
Sbjct: 379 FYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDM------IRSGETAPNYITLVNVITS 432

Query: 198 CG-FSLLKHGKEIHASVL-RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           C    L K G E+  ++  R G          ++D+  R G    A  V   M ++  +S
Sbjct: 433 CSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSIS 492

Query: 256 -WSAMI-AC 262
            W A++ AC
Sbjct: 493 VWGALLGAC 501


>gi|302808794|ref|XP_002986091.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
 gi|300146239|gb|EFJ12910.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
          Length = 604

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/583 (37%), Positives = 337/583 (57%), Gaps = 17/583 (2%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  LLL+C    +L +   +H+ +   G     FL   ++ +Y     ++D    F   +
Sbjct: 36  YLDLLLACGRSKNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSGMK 95

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           RR I  WNA+  A     R  + + ++ RM     GI+    T+T VL A      G  L
Sbjct: 96  RRNIVSWNAVISAYAQNDRSSDAIVIFLRM--LLDGIQPSYVTFTSVLNAFA----GPEL 149

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
            +  K +H   L  G+     + T L++MY++ G +  A  VF ++A+K+VVSWS MIA 
Sbjct: 150 HRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAA 209

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           YA+ G   EALE+F  M  ++  +  N +T V+V+ AC  +A +   + IH  I+  GL+
Sbjct: 210 YAQTGHGTEALEMFHRM--DAEGIQANVITFVTVVHACVLVARITDARTIHCRIIEAGLE 267

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
           S   + +AL+ MY +CG L   + +FD + +RDVV W++++ +Y  HG+   A+++F  M
Sbjct: 268 SNTVLGTALLNMYGKCGGLAEAKKIFDKLAERDVVVWSAILEAYARHGHPRVALKLFTLM 327

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              GV P+ ++FV VL AC H G V EG+  F S+ ++H +RP+  H  CM+D+LGRA K
Sbjct: 328 QQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRAGK 387

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           LEEA   I  + ++     W   LGSCR + ++E  +RA++++FE  P     Y+ LA +
Sbjct: 388 LEEAESFIARMPVKEEAITWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTLASM 447

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           Y  A M +E + V RL+E+R  +K PG S+I V+ +++ F    ++HPQ +++++ L  L
Sbjct: 448 YTDAGMPEEAEAVARLMESRCPKKEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSYLDEL 507

Query: 563 SAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT--SKGETIRITKNLR 620
            A   E GYVP T+ +L  L + E++     HSE+LA+AFG ++    +   I I KNLR
Sbjct: 508 HARALELGYVPDTRPLL--LGSVERKL----HSERLALAFGAMSVPGKRNSPIHIIKNLR 561

Query: 621 LCEDCHSFTKFISK-FANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH FTKF+S+    +EI+VRD +RFH F++GVCSCGDYW
Sbjct: 562 VCRDCHEFTKFVSRTMEGREIIVRDTSRFHLFKDGVCSCGDYW 604


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/533 (39%), Positives = 331/533 (62%), Gaps = 9/533 (1%)

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR-GEEVLELYRRMNGTGTGIRSDRF 184
           S +  +D AR +F + +R  I+ WN++ R  + +    +E + L+R+M   G     + F
Sbjct: 104 SPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYP-NPNTF 162

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           T  +VLKAC       S L+ G+++HA+VL+ G+     + T L++ YA+   ++ A  V
Sbjct: 163 TMAFVLKACSI----VSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKV 218

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F ++  +N+V+WS MI+ YAR G+  EAL LFR+M  +   + P+ VTMVSV+ ACAA  
Sbjct: 219 FDEITDRNLVAWSTMISGYARIGLVNEALGLFRDM--QKAGVVPDEVTMVSVISACAASG 276

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           AL+ GK +H YI ++ +++ L + +ALV MYA+CG +E  + VFD M  +D  +W+S+I 
Sbjct: 277 ALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIV 336

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
              ++G    A++ F  M    V P+ ++F+ VL AC+H+GLV EG+  + SM  E  I 
Sbjct: 337 GLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIV 395

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484
           PS+E Y CMVDLL RA+ +E+A  ++E + I P P +W +LL  C+   N++ +E  ++R
Sbjct: 396 PSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQR 455

Query: 485 LFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVS 544
           L ELEP NA NY+LL+++YA+   W+++ +V++ ++  G++ VPG S IEV   ++ FV 
Sbjct: 456 LLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVM 515

Query: 545 VDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604
            D  HP+  ++  +L ++S  +   G+ P    VL+++  EEKE  +  HSE+LA+A+GL
Sbjct: 516 GDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGL 575

Query: 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           + T     IRI KNLR+C DCH  TK IS    +EI+VRD  RFH F NG CS
Sbjct: 576 LKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCS 628



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 141/289 (48%), Gaps = 9/289 (3%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           PNP   T   +L +C+  ++L +   VH+++  +GF   PF+ T L+N Y+  + +  A 
Sbjct: 157 PNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLAS 216

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            VFD+   R +  W+ +       G   E L L+R M     G+  D  T   V+ AC A
Sbjct: 217 KVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQ--KAGVVPDEVTMVSVISACAA 274

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           S      L  GK +HA + +      + + T L++MYA+ GC+  A  VF  M VK+  +
Sbjct: 275 SGA----LDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKA 330

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           WS+MI   A NG+A +ALE F    ME   + PN VT + VL ACA    + +G+     
Sbjct: 331 WSSMIVGLAINGLAEDALEEFFR--MEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSS 388

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLI 363
           +L  G+   + +   +V +  R   +E    + + M    + V W +L+
Sbjct: 389 MLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLL 437


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/619 (36%), Positives = 355/619 (57%), Gaps = 61/619 (9%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLIN---VYSHFDSVDDARHVFDKTRRRTIYVWNA 151
           ++ D   +H+ +      +DP    +L+    V  H D +D AR +F    R   + +N 
Sbjct: 23  TMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRD-LDYARKIFRSMHRPNCFSYNT 81

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           L RAL+ +    + L ++  M      +  + FT+  V KAC  +      L+ G+++H 
Sbjct: 82  LIRALSESNDPCDALLVFIEMV-EDCSVEPNCFTFPSVFKACGRAE----RLREGRQVHG 136

Query: 212 SVLRHGYN----------------------------------------------GIVHIM 225
             ++ G +                                              G V + 
Sbjct: 137 LAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLW 196

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
             +ID Y R G +  A  +F +M  ++VVSW+ MIA YA++G   EA+E+FREM M   +
Sbjct: 197 NVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMA--E 254

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLEL 343
           + PN VT+VSVL A + L ALE GK +H Y +R   G+D +L   SAL+ MYA+CG +E 
Sbjct: 255 VPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLG--SALIDMYAKCGSIEK 312

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
              VF+ + KR+VV+W+++I+   +HG     +  F++M   GV PS ++++ +L ACSH
Sbjct: 313 ALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSH 372

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
           AGLV EG+  F+ M +   + P +EHY CMVDLLGRA  LEE+ ++I ++ I+P   +W 
Sbjct: 373 AGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWK 432

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           +LLG+C++H NVE+ +R ++ L EL P ++G+YV L+++YA+   W+ V +V+ +++   
Sbjct: 433 ALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMD 492

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
           ++K PG S IE+   ++ F+  D+ HP+ +++H++L  +S  +   GY P T  VL ++D
Sbjct: 493 VRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMD 552

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            E+KE  +  HSEK+A+AFGLI+T     +RITKNLR+CEDCHS  K ISK   ++I+VR
Sbjct: 553 EEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVR 612

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D  RFHHF NG CSC DYW
Sbjct: 613 DRKRFHHFVNGSCSCMDYW 631



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 161/373 (43%), Gaps = 65/373 (17%)

Query: 53  NELIQSLCKQGNLRQALDVL-------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSH 105
           N LI++L +  +   AL V        S+EPN    T+  +  +C     L +   VH  
Sbjct: 80  NTLIRALSESNDPCDALLVFIEMVEDCSVEPN--CFTFPSVFKACGRAERLREGRQVHGL 137

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDD-------------------------------- 133
               G D D F+V+ ++ +Y     ++D                                
Sbjct: 138 AVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWN 197

Query: 134 --------------ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
                         AR++FD+  +R++  WN +      +G  +E +E++R M      +
Sbjct: 198 VMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ--MAEV 255

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
             +  T   VL A   S  G   L+ GK +H   +R+       + + LIDMYA+ G + 
Sbjct: 256 PPNYVTLVSVLPA--MSRLG--ALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIE 311

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
            A  VF  +  +NVV+WS +IA  A +G A + L+ F +  ME   + P+ VT + +L A
Sbjct: 312 KALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFED--MERAGVMPSDVTYIGLLSA 369

Query: 300 CAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVV 357
           C+    + +G+    +++R  GL+  +     +V +  R G LE  + +  +M  K D V
Sbjct: 370 CSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDV 429

Query: 358 SWNSLISSYGVHG 370
            W +L+ +  +HG
Sbjct: 430 IWKALLGACKMHG 442


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/632 (34%), Positives = 360/632 (56%), Gaps = 26/632 (4%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEP--NPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I +  ++G    AL +    L +EP   P + T+  LL + +  ++L     +H+H+
Sbjct: 294 NAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHI 353

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
                + D  +   LI  YS    V  AR +F++   R I  WN++        +     
Sbjct: 354 FRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCF 413

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           ++++RM    +GI  D  + T +  A    S G    + GKEIH  +LR    G V +  
Sbjct: 414 DIFKRM--MLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSV 471

Query: 227 T--LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
           +  ++ MYA+F  +  A  +F  M  ++  SW+AM+  Y+RN    + L +F +++ +  
Sbjct: 472 SNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGF 531

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYI--LRRGLD-----SILPVVSALVTMYAR 337
            L  + V++  +L +C  L +L+ GK  H  +  L  G D     S+L + +AL++MY++
Sbjct: 532 PL--DHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSK 589

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           CG ++    VF  M+++DV SW ++I+    HG   +A+Q+F+ M   G+ P+ ++F+++
Sbjct: 590 CGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLAL 649

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           L AC+H GLV+EG   F+SM  ++ + PS+EHYACM+DL GR+ + + A  ++E      
Sbjct: 650 LMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLF 709

Query: 458 GP------KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
            P       +W  LLG+C     ++L   A+ ++ ELEP +   Y+LLA++YA++ +W++
Sbjct: 710 KPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWED 769

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGY 571
             +V++ +  +GL+K  G S I+   + + FV+ D +HPQ ++++  L  L+   +  GY
Sbjct: 770 AIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGY 829

Query: 572 VPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE-TIRITKNLRLCEDCHSFTK 630
           VP T++VL+D+D  EKE I+  HSEKLAV+FGL+N   G   IR+ KNLR+CEDCHS+ K
Sbjct: 830 VPMTELVLHDVDETEKEAILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMK 889

Query: 631 FISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           F S    +EIL+RD  RFH FR+G CSCGDYW
Sbjct: 890 FASLLEKREILLRDSQRFHLFRDGSCSCGDYW 921



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 205/415 (49%), Gaps = 25/415 (6%)

Query: 55  LIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           LI +  + GN  QA  +        ++PN       LL +SC+    +     +H     
Sbjct: 92  LIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLA-SLLKVSCST-GEIGLCRQLHGWSIR 149

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT--IYVWNALFRALTLAGRGEEVL 166
            GF  D  +    I +YS    ++DA+ VFD+T      I +WN++  A    G   EVL
Sbjct: 150 TGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVL 209

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            L+ +M   G  +     TY  V+ AC +S       K+G  +H  +++ G     ++  
Sbjct: 210 RLFCKMVSVGV-VAPTELTYASVVNACGSSG----EEKYGAMVHGRIIKAGLEA-TNLWN 263

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +L+  Y + G + +A  +F +++ K+VVSW+AMIA   + G    AL LFR M+     +
Sbjct: 264 SLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPV 323

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            PN VT +S+L A + L+AL  G+ IH +I R  L+    + ++L+T Y++C ++   + 
Sbjct: 324 QPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKARE 383

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH--A 404
           +F+ +  RD++SWNS+++ Y  +   G+   IFK M+  G+ P   S   +  A S   +
Sbjct: 384 IFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSS 443

Query: 405 GLV--EEGKMLFESMRKEHMIRP---SVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           GL+    GK +   + +   I P   S+     ++ +  + N++ +A KI + ++
Sbjct: 444 GLIYFRRGKEIHGYILRR--ITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMK 496



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 172/342 (50%), Gaps = 28/342 (8%)

Query: 102 VHSHL-------TDNGFDQDPFL----VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN 150
           +HSHL        ++GF           +K +   S  + +  A+ +FD    R +  W+
Sbjct: 31  LHSHLRNKQLEFQNHGFSSQFIFRCSACSKFLVSQSEHERLKCAQQLFDNFPNRDVISWS 90

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
           AL  A +  G   +   L+++M   G G++ + F+   +LK     SC    +   +++H
Sbjct: 91  ALIAAYSRCGNFAQAFGLFQKM--MGEGLQPNGFSLASLLKV----SCSTGEIGLCRQLH 144

Query: 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--KNVVSWSAMIACYARNGM 268
              +R G+     I    I MY+R G +  A  VF + ++   +++ W+++IA Y  +G 
Sbjct: 145 GWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGC 204

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
             E L LF +M+     + P  +T  SV+ AC +    + G M+HG I++ GL++   + 
Sbjct: 205 WVEVLRLFCKMV-SVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEAT-NLW 262

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM--IYHG 386
           ++LVT Y +CG L+    +F+ + ++DVVSWN++I++    G G  A+ +F+ M  +   
Sbjct: 263 NSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPP 322

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           V P+ ++F+S+L A S    +  G+ +       H+ R S+E
Sbjct: 323 VQPNRVTFLSLLSAVSGLSALRCGREI-----HAHIFRLSLE 359



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 140/266 (52%), Gaps = 10/266 (3%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +F     ++V+SWSA+IA Y+R G   +A  LF++M+ E   L PN  ++ S+L+   + 
Sbjct: 77  LFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEG--LQPNGFSLASLLKVSCST 134

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD--KRDVVSWNS 361
             +   + +HG+ +R G      + +A +TMY+RCG LE  Q VFD       D++ WNS
Sbjct: 135 GEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNS 194

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           +I++Y  HG   + +++F +M+  G V+P+ +++ SV+ AC  +G  + G M+   + K 
Sbjct: 195 IIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKA 254

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV-WGSLLGSCRIHCNVELAE 479
            +   +   +  +V   G+   L+ A+++ E  RI     V W +++ +       E A 
Sbjct: 255 GL--EATNLWNSLVTFYGKCGNLQHASQLFE--RISRKDVVSWNAMIAANEQRGEGENAL 310

Query: 480 RASKRLFELEPTNAGNYVLLADVYAA 505
              +R+ ++EP    N V    + +A
Sbjct: 311 GLFRRMLKVEPPVQPNRVTFLSLLSA 336



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           +L+  Q +FD+   RDV+SW++LI++Y   G   +A  +F++M+  G+ P+  S  S+L 
Sbjct: 70  RLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLK 129

Query: 400 ACSHAGLVEEGKMLFE-SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP- 457
                G +   + L   S+R    +   +   A  + +  R   LE+A ++ ++  +   
Sbjct: 130 VSCSTGEIGLCRQLHGWSIRTGFGLDSGIR--AAWITMYSRCGVLEDAQRVFDETSLLAL 187

Query: 458 GPKVWGSLLGSCRIH-CNVEL 477
              +W S++ +   H C VE+
Sbjct: 188 DILLWNSIIAAYIFHGCWVEV 208


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/603 (35%), Positives = 337/603 (55%), Gaps = 49/603 (8%)

Query: 64  NLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN 123
           N+ Q +     +PN +  T   +L + +    L+     H ++  NGFD D ++ T LI+
Sbjct: 356 NILQRMQGEGFKPNSSSMTS--VLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLID 413

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +Y    S+  A+ VFD  + R I+ WN+L    +  G  E+ L L  +M   G  I+ D 
Sbjct: 414 MYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEG--IKPDL 471

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
            T+                                NG       +I  YA +GC   A  
Sbjct: 472 VTW--------------------------------NG-------MISGYAMWGCGKEALA 492

Query: 244 VFSQMA----VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
           V  Q        NVVSW+A+I+  ++ G   ++L+ F +M  E   + PNS ++  +L+A
Sbjct: 493 VLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEG--VMPNSASITCLLRA 550

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           CA+L+ L++GK IH   +R G    + V +AL+ MY++   L+    VF  +  + + SW
Sbjct: 551 CASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASW 610

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           N +I  + + G G +AI +F EM   GV P  I+F ++L AC ++GL+ EG   F+SM  
Sbjct: 611 NCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMIT 670

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
           ++ I P +EHY CMVDLLGRA  L+EA  +I  + ++P   +WG+LLGSCRIH N++ AE
Sbjct: 671 DYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAE 730

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKM 539
            A+K LF+LEP N+ NY+L+ ++Y+  + W+++  ++ L+ A G++     S I++ +++
Sbjct: 731 TAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRV 790

Query: 540 YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA 599
           + F S ++ HP   +++  L  L +EMK+ GYVP    V  ++D  EK++I+L H+EKLA
Sbjct: 791 HVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLA 850

Query: 600 VAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           + +GLI    GE IR+ KN R+C DCHS  K+IS    +E+ +RD  RFHHFR G CSC 
Sbjct: 851 ITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCN 910

Query: 660 DYW 662
           D+W
Sbjct: 911 DFW 913



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 189/428 (44%), Gaps = 52/428 (12%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
            Y + L +CT    +   + +H  L   GFD D +L   L+N Y     ++ A  VF + 
Sbjct: 135 VYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEM 194

Query: 142 RRRTIYVWNALFRALTLAGRGEEV---LELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
                 +WN    A+ L  + E++   +EL+R+M  +   ++++  T   VL+AC     
Sbjct: 195 PNPEALLWN---EAIILNLQSEKLQKGVELFRKMQFSF--LKAETATIVRVLQACGKMGA 249

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
               L   K+IH  V R G +  V +   LI MY++ G +  A  VF  M  +N  SW++
Sbjct: 250 ----LNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNS 305

Query: 259 MIACYARNGMAFEALELFREM---------------------------------IMESHD 285
           MI+ YA  G   +A  LF E+                                  M+   
Sbjct: 306 MISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEG 365

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
             PNS +M SVLQA + L  L  GK  HGY+LR G D  + V ++L+ MY +   L   Q
Sbjct: 366 FKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQ 425

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
            VFD+M  R++ +WNSL+S Y   G    A+++  +M   G+ P  +++  ++   +  G
Sbjct: 426 AVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWG 485

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
             +E   +     K   + P+V  +  ++    +A    ++ K    ++ E      G +
Sbjct: 486 CGKEALAVLHQ-TKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQE------GVM 538

Query: 466 LGSCRIHC 473
             S  I C
Sbjct: 539 PNSASITC 546



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 160/328 (48%), Gaps = 10/328 (3%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTK-LINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
           SL+    +H+ +       +P    K LI+ Y  F     A  VF     R    WN+  
Sbjct: 45  SLTSVKMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFV 104

Query: 154 RAL-TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
               + AG    VLE+++ ++G G    S+   Y+  LK C         +  G EIH  
Sbjct: 105 EEFKSSAGSLHIVLEVFKELHGKGVVFDSE--VYSVALKTCTR----VMDIWLGMEIHGC 158

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
           +++ G++  V++   L++ Y R   +  A  VF +M     + W+  I    ++    + 
Sbjct: 159 LIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKG 218

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
           +ELFR+M  +   L   + T+V VLQAC  + AL   K IHGY+ R GLDS + + + L+
Sbjct: 219 VELFRKM--QFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLI 276

Query: 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI 392
           +MY++ GKLEL + VFD M+ R+  SWNS+ISSY   G+   A  +F E+    + P  +
Sbjct: 277 SMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIV 336

Query: 393 SFVSVLGACSHAGLVEEGKMLFESMRKE 420
           ++  +L      G  EE   + + M+ E
Sbjct: 337 TWNCLLSGHFLHGYKEEVLNILQRMQGE 364



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 141/321 (43%), Gaps = 14/321 (4%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           LI    K  +L  A  V     N     +  L+   +      DAL + + +   G   D
Sbjct: 411 LIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPD 470

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRR----RTIYVWNALFRALTLAGRGEEVLELYR 170
                 +I+ Y+ +    +A  V  +T+       +  W AL    + AG   + L+ + 
Sbjct: 471 LVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFA 530

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           +M   G  +  +  + T +L+AC +     SLL+ GKEIH   +R+G+   V + T LID
Sbjct: 531 QMQQEG--VMPNSASITCLLRACAS----LSLLQKGKEIHCLSIRNGFIEDVFVATALID 584

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MY++   +  A  VF ++  K + SW+ MI  +A  G+  EA+ +F E  M+   + P++
Sbjct: 585 MYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNE--MQKVGVGPDA 642

Query: 291 VTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
           +T  ++L AC     + +G K     I    +   L     +V +  R G L+    +  
Sbjct: 643 ITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIH 702

Query: 350 HMD-KRDVVSWNSLISSYGVH 369
            M  K D   W +L+ S  +H
Sbjct: 703 TMPLKPDATIWGALLGSCRIH 723


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/552 (38%), Positives = 322/552 (58%), Gaps = 13/552 (2%)

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           DPF+    +++Y     +  ARH+F +   R +  WNA+     L GR  E +E Y  + 
Sbjct: 46  DPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLR 105

Query: 174 GTGTGIRSDRFTYTYVLKACV--ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
             G G+ +       V+ AC    +  G   L  G++ H  V++ G+   V ++ +++D 
Sbjct: 106 EAG-GLPN-------VVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDF 157

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           Y +  C   A  VF  M V+N VSW +M+A YA+NG   EA   +        +  P   
Sbjct: 158 YGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEE--PTDF 215

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
            + S L  CA L  L  G+ +H   +R  +D+ + V SALV MY +CG +E  + +F   
Sbjct: 216 MVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYET 275

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEG 410
            +R++V+WN++I  Y   G    A+ +F +MI  G  +P+ I+ V+V+ +CS  GL ++G
Sbjct: 276 PQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDG 335

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
             LFE+MR+   I P  EHYAC+VDLLGRA   E+A ++I+ + + P   VWG+LLG+C+
Sbjct: 336 YELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACK 395

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
           +H   EL   A+++LFEL+P ++GN+VLL++++A+A  W E   +++ ++  G++K PG 
Sbjct: 396 MHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGC 455

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S +  K  ++ F + D  H  + ++ ALL  L  +M+  GY+P T+  LYDL+ EEKE  
Sbjct: 456 SWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESE 515

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           V  HSEKLA+AFGLI    G  IRI KNLR+C DCH   KFIS    +EI+VRD NRFHH
Sbjct: 516 VFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHH 575

Query: 651 FRNGVCSCGDYW 662
           F+   CSCGDYW
Sbjct: 576 FKQYQCSCGDYW 587



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 149/366 (40%), Gaps = 24/366 (6%)

Query: 22  IAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQH 81
             +LP  P   C  + +   T    L+     E+        N      VL   P  T  
Sbjct: 40  FGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIE 99

Query: 82  TYELL---------LLSCTHHNSLSDAL------NVHSHLTDNGFDQDPFLVTKLINVYS 126
            Y  L         + +C   N+ + A+        H  +   GF+ D  ++  +++ Y 
Sbjct: 100 AYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYG 159

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
                  AR VFD    R    W ++  A    G  EE    Y  +    +G     F  
Sbjct: 160 KCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAY--LGARRSGEEPTDFMV 217

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
           +  L  C     G   L  G+ +HA  +R   +  + + + L+DMY + GCV  A  +F 
Sbjct: 218 SSALTTCA----GLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFY 273

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
           +   +N+V+W+AMI  YA  G A  AL +F +MI  S +  PN +T+V+V+ +C+     
Sbjct: 274 ETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMI-RSGETAPNYITLVNVITSCSRGGLT 332

Query: 307 EQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS-WNSLIS 364
           + G  +   +  R G++      + +V +  R G  E    V   M  R  +S W +L+ 
Sbjct: 333 KDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLG 392

Query: 365 SYGVHG 370
           +  +HG
Sbjct: 393 ACKMHG 398


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/587 (36%), Positives = 332/587 (56%), Gaps = 11/587 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P+  T+  LL +    +       VH  +    F  + F+   L++ YS  D VD+   +
Sbjct: 239 PSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKL 298

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F +        +N +  +    G+ +E  +L+R++  T    R DR  + +     +A+S
Sbjct: 299 FXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFT----RFDRRQFPFATLLSIATS 354

Query: 198 CGFSL-LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
              SL L+ G++IH   +  G N    +   L+DMYA+      A  +F  +A K+ V W
Sbjct: 355 ---SLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPW 411

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AMI+ Y + G   E + +F +M      +  +  T  S+L+ACA LA++  G+ +H  +
Sbjct: 412 TAMISAYVQKGKHEEGINVFSDM--RRTGVPADQATFASILRACANLASISLGRQLHSLL 469

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           +R G  S +   SAL+  YA+CG +      F  M +R+ VSWN+LIS+Y  +G     +
Sbjct: 470 IRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTL 529

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
             F++MI  G  P  +SF+SVL ACSH G VEE    F SM + + + P  EHY  MVD+
Sbjct: 530 NSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDV 589

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP-TNAGN 495
           L R  + +EA K++ ++  EP   +W S+L SCRIH N ELA++A+ RLF +E   +A  
Sbjct: 590 LCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAP 649

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           Y+ ++++YA A  WD V +VK+ +  RG++KVP  S +E+K + + F + D+ HP+ +++
Sbjct: 650 YINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKI 709

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
              +  LS EM++KGY P T   L+D+D   K   +  HSE+ A+AF L+NT  G  I +
Sbjct: 710 LRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVV 769

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR C DCH+  K IS+   +EI+VRD +RFHHF++GVCSCGDYW
Sbjct: 770 MKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 194/435 (44%), Gaps = 42/435 (9%)

Query: 28  KPSSVCCCVSLNSSTTPTSLSSRNKNELIQS-LCKQGNLRQALDVLSIEPNPTQHTYELL 86
           KP       +L    +P    S N N LI + + K G            PN  +  +++ 
Sbjct: 2   KPYRATLFQNLVLRNSPAPKPSLNSNHLIDAHIVKTG----------FNPNTCRSNFQV- 50

Query: 87  LLSCTHHNSLSDALNVHSHLTDNGFDQDP----FLVTKLINVYSHFDSVDDARHVFDKTR 142
                 +N L     VH+H     FDQ P      +  +I+ +  F  +  AR +FD   
Sbjct: 51  ------NNFLERGDLVHAHQV---FDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMV 101

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
            RT   W  L      + + +E   LY  M   G  I  D  T   +L        GF  
Sbjct: 102 ERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGG--IEPDYVTLVTLLS-------GFGE 152

Query: 203 LKHGK---EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
           L+      +IH  V++ GY   + +  +L+D Y +  C+  A  +F  M  K+ V+++++
Sbjct: 153 LETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSL 212

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           +  Y+  G+  EA+ELF E  + +  + P+  T  ++L A   L   + G+ +HG++L+ 
Sbjct: 213 MTGYSNEGLNEEAIELFLE--LHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKT 270

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
                + V +AL+  Y++  +++    +F  M + D +S+N +I+SY  +G   ++  +F
Sbjct: 271 NFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLF 330

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHMIRPSVEHYACMVDLLG 438
           +++ +         F ++L   + +  +  G+ +  +++         VE+   +VD+  
Sbjct: 331 RKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN--ALVDMYA 388

Query: 439 RANKLEEAAKIIEDL 453
           + N  +EA KI +++
Sbjct: 389 KCNGDKEAQKIFDNI 403


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/566 (37%), Positives = 340/566 (60%), Gaps = 13/566 (2%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            VH+HL   G+ +   L+TKLI +     ++     +F        +++N++ ++ +   
Sbjct: 27  QVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLR 86

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
                +  YRRM    + +    +T+T V+K+C       S L+ GK +H   +  G+  
Sbjct: 87  LPLHCVAYYRRM--LSSNVSPSNYTFTSVIKSCA----DLSALRIGKGVHCHAVVSGFGL 140

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
             ++   L+  Y++ G +  A  VF +M  K++V+W+++++ + +NG+A EA+++F +M 
Sbjct: 141 DTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMR 200

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
               +  P+S T VS+L ACA   A+  G  +H YI+  GLD  + + +AL+ +Y+RCG 
Sbjct: 201 ESGFE--PDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGD 258

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLG 399
           +   + VFD M + +V +W ++IS+YG HGYG +A+++F +M    G  P+ ++FV+VL 
Sbjct: 259 VGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLS 318

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE--- 456
           AC+HAGLVEEG+ +++ M K + + P VEH+ CMVD+LGRA  L+EA K I  L      
Sbjct: 319 ACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKA 378

Query: 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516
             P +W ++LG+C++H N +L    +KRL  LEP N G++V+L+++YA +   DEV  ++
Sbjct: 379 TAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIR 438

Query: 517 RLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTK 576
             +    L+K  G S IEV+ K Y F   DE H +  +++  L  L +  KE GY P ++
Sbjct: 439 DGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSE 498

Query: 577 VVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFA 636
            V++ ++ EEKE  +  HSEKLAVAFGL+ T     I I KNLR+CEDCHS  K+IS  +
Sbjct: 499 EVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVS 557

Query: 637 NKEILVRDVNRFHHFRNGVCSCGDYW 662
           N++I VRD  RFHHF+NG CSC DYW
Sbjct: 558 NRQITVRDKLRFHHFQNGSCSCLDYW 583



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 160/323 (49%), Gaps = 22/323 (6%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           +LS   +P+ +T+  ++ SC   ++L     VH H   +GF  D ++   L+  YS    
Sbjct: 98  MLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGD 157

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           ++ AR VFD+   ++I  WN+L       G  +E ++++ +M    +G   D  T+  +L
Sbjct: 158 MEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMR--ESGFEPDSATFVSLL 215

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
            AC A +   SL   G  +H  ++  G +  V + T LI++Y+R G V  A  VF +M  
Sbjct: 216 SAC-AQTGAVSL---GSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKE 271

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC---PNSVTMVSVLQACAALAALE 307
            NV +W+AMI+ Y  +G   +A+ELF +M     D C   PN+VT V+VL ACA    +E
Sbjct: 272 TNVAAWTAMISAYGTHGYGQQAVELFNKM----EDDCGPIPNNVTFVAVLSACAHAGLVE 327

Query: 308 QGKMIHGYILRRGLDSILPVVS---ALVTMYARCGKLELGQCVFDHMDKRDVVS----WN 360
           +G+ ++  + +     ++P V     +V M  R G L+        +D     +    W 
Sbjct: 328 EGRSVYKRMTKS--YRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWT 385

Query: 361 SLISSYGVHGYGGKAIQIFKEMI 383
           +++ +  +H      ++I K +I
Sbjct: 386 AMLGACKMHRNYDLGVEIAKRLI 408



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 144/270 (53%), Gaps = 4/270 (1%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           +K  +++HA ++  GY     ++T LI +      + Y   +F  + + +   ++++I  
Sbjct: 22  VKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKS 81

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
            ++  +    +  +R M+  S ++ P++ T  SV+++CA L+AL  GK +H + +  G  
Sbjct: 82  TSKLRLPLHCVAYYRRML--SSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFG 139

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
               V +ALVT Y++CG +E  + VFD M ++ +V+WNSL+S +  +G   +AIQ+F +M
Sbjct: 140 LDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQM 199

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              G  P   +FVS+L AC+  G V  G  + + +  E +   +V+    +++L  R   
Sbjct: 200 RESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGL-DLNVKLGTALINLYSRCGD 258

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           + +A ++ + ++ E     W +++ +   H
Sbjct: 259 VGKAREVFDKMK-ETNVAAWTAMISAYGTH 287


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/656 (34%), Positives = 359/656 (54%), Gaps = 24/656 (3%)

Query: 18  HTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPN 77
           H NS+ HL  K   +    +L  +    ++ S N   L+      GN    L+VL +  N
Sbjct: 52  HLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNV--LMAGYLHGGN---HLEVLVLFKN 106

Query: 78  --------PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
                   P ++ +   L +C+H   + + +  H  L   G     ++ + L+++YS   
Sbjct: 107 MVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCS 166

Query: 130 SVDDARHVFDKT---RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
            V+ A  V D         I+ +N++  AL  +GRGEE +E+ RRM      +  D  TY
Sbjct: 167 HVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRM--VDECVAWDHVTY 224

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
             V+  C         L+ G  +HA +LR G      + + LIDMY + G V+ A  VF 
Sbjct: 225 VGVMGLCAQ----IRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFD 280

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
            +  +NVV W+A++  Y +NG   E+L LF    M+     PN  T   +L ACA +AAL
Sbjct: 281 GLQNRNVVVWTALMTAYLQNGYFEESLNLF--TCMDREGTLPNEYTFAVLLNACAGIAAL 338

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
             G ++H  + + G  + + V +AL+ MY++ G ++    VF  M  RD+++WN++I  Y
Sbjct: 339 RHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGY 398

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426
             HG G +A+Q+F++M+     P+ ++F+ VL A SH GLV+EG      + +   I P 
Sbjct: 399 SHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPG 458

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF 486
           +EHY CMV LL RA  L+EA   ++  +++     W +LL +C +H N +L  R ++ + 
Sbjct: 459 LEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVL 518

Query: 487 ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD 546
           +++P + G Y LL+++YA A  WD V  +++L+  R ++K PG S ++++  ++ F+S  
Sbjct: 519 QMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEG 578

Query: 547 EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLIN 606
             HP+  Q++  +  L A +K  GYVP    VL+D++ E+KE  +  HSEKLA+A+GL+ 
Sbjct: 579 SNHPESIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMK 638

Query: 607 TSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
                 IRI KNLR+C+DCH+  K ISK  N+ I+VRD NRFHHFR+G C+C D+W
Sbjct: 639 IPSPAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/641 (34%), Positives = 349/641 (54%), Gaps = 54/641 (8%)

Query: 54  ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113
           +++ + C +  L  A+ ++S   NP  H Y  L L+     +  D + V          +
Sbjct: 124 QMLHAACFRTMLPSAVPLVS---NPIIHMYVELGLAGDARRAFDD-IPV----------K 169

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           D    T +I+  +    +DDA  +   +  R +  W  L    + AGR  E ++ +  M 
Sbjct: 170 DAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSM- 228

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
               GI  D  T   +L AC         L  G+ +H  V   G      ++  LIDMYA
Sbjct: 229 -LSDGIEPDEVTVIGLLSACAQ----LKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYA 283

Query: 234 R--------------------------------FGCVMYAGFVFSQMAVKNVVSWSAMIA 261
           +                                 G V  A ++F QM  +++V+++++I 
Sbjct: 284 KCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLIT 343

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            Y   G   EAL LF  M M  HDL  ++ TMVS+L ACA+L AL QG+ +H  I +R +
Sbjct: 344 GYIHGGRLREALLLF--MQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLV 401

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           +  + + +AL+ MY +CG++E    VF  M  RDV +W+++I+    +G G  A++ F  
Sbjct: 402 EVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFW 461

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   G  P+ ++++++L ACSH+ L++EG++ FE MR  H IRP +EHY CM+DLLGR+ 
Sbjct: 462 MKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSG 521

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
            L+EA  ++  + ++P   +W S+L +CR+H +  LA  A++ L +LEP     YV L +
Sbjct: 522 LLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYN 581

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +Y  +  W++  +++RL+E RG++K  G S I V  +++ F+  D  HPQ  ++ A++  
Sbjct: 582 IYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEE 641

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           ++  +K  GY P T  +  D+D EEKE  +L HSEK+A+AFGLI+ +    + I KNLR+
Sbjct: 642 ITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRV 701

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CEDCHS  K IS+  N+EI+VRD +RFHHFR+G CSC D+W
Sbjct: 702 CEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 196/432 (45%), Gaps = 80/432 (18%)

Query: 95  SLSDALNVHSHLTDNGFDQDP----FLVTKLINVYSHFDSVD--DARHVFDKTRRRTIYV 148
           S+  A  +H+ L  +G    P     L+  L+N ++  D +    A  +FD+    T ++
Sbjct: 11  SVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCST-FL 69

Query: 149 WNALFRALTLAGRG-EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGK 207
           ++   RA   A  G E  L LYRRM  TG  + +D FT+ ++ K C        L +   
Sbjct: 70  FDTALRACFRASSGPESPLILYRRMRRTG--VCTDAFTFHFLFKCCARGRAHVLLCQM-- 125

Query: 208 EIHASVLRHGY--------NGIVHI------------------------MTTLIDMYARF 235
            +HA+  R           N I+H+                         TT+I   A+ 
Sbjct: 126 -LHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKL 184

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G +  A  +      +NV+SW+ +I+ Y+R G A EA++ F  M+  S  + P+ VT++ 
Sbjct: 185 GLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSML--SDGIEPDEVTVIG 242

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL-------------- 341
           +L ACA L  L  G+ +H  +  +G+     +V AL+ MYA+CG +              
Sbjct: 243 LLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGR 302

Query: 342 ------------------ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
                             ++ + +FD M+ RD+V++NSLI+ Y   G   +A+ +F +M 
Sbjct: 303 RPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMR 362

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
            H +     + VS+L AC+  G + +G+ L   + ++ ++   +     ++D+  +  ++
Sbjct: 363 RHDLRADNFTMVSLLTACASLGALPQGRALHACI-EQRLVEVDIYLGTALLDMYLKCGRV 421

Query: 444 EEAAKIIEDLRI 455
           EEA+ + + + +
Sbjct: 422 EEASLVFQAMSV 433



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 133/309 (43%), Gaps = 43/309 (13%)

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
           L+  G+ +H     H  N +V+  T    ++ R     YA  +F +M     +  +A+ A
Sbjct: 22  LVASGRLLHPPSASHLLNSLVNCFTPTDPLHLR-----YALCLFDRMPCSTFLFDTALRA 76

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA-ALAALEQGKMIHGYILRRG 320
           C+  +      L L+R M      +C ++ T   + + CA   A +   +M+H    R  
Sbjct: 77  CFRASSGPESPLILYRRM--RRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTM 134

Query: 321 LDSILPVVS-ALVTMY-------------------------------ARCGKLELGQCVF 348
           L S +P+VS  ++ MY                               A+ G L+   C+ 
Sbjct: 135 LPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLL 194

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
            H   R+V+SW  LIS Y   G   +A+  F  M+  G+ P  ++ + +L AC+    + 
Sbjct: 195 RHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLV 254

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL-G 467
            G+ L + + ++ M+  S +    ++D+  +   +  A ++ + L     P+ W +++ G
Sbjct: 255 FGRSLHKLVGEKGMLM-SGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDG 313

Query: 468 SCRI-HCNV 475
            C++ H +V
Sbjct: 314 YCKLGHVDV 322



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 45/252 (17%)

Query: 53  NELIQSLCKQGNLRQALDVLSI----EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N LI      G LR+AL +       +      T   LL +C    +L     +H+ +  
Sbjct: 339 NSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQ 398

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              + D +L T L+++Y     V++A  VF     R ++ W+A+   L   G G+  LE 
Sbjct: 399 RLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEY 458

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M     G + +  TY  +L AC + SC   LL  G+ ++   +R     ++H +  L
Sbjct: 459 FFWMK--VDGFQPNSVTYIAILTAC-SHSC---LLDEGR-LYFEEMR-----LLHNIRPL 506

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I+ Y   GC                     MI    R+G+  EA++L R M M+     P
Sbjct: 507 IEHY---GC---------------------MIDLLGRSGLLDEAMDLVRTMPMQ-----P 537

Query: 289 NSVTMVSVLQAC 300
           N+V   S+L AC
Sbjct: 538 NAVIWASILSAC 549


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/615 (36%), Positives = 372/615 (60%), Gaps = 14/615 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYEL----LLLSCTHHNSLSDALNVHSHLTD 108
           N LI+   +    ++AL+  S        + E+    ++ +    ++L   + +H+++  
Sbjct: 355 NSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIK 414

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +G+D +  +   LI++YS  +        F +   + +  W  +           E LEL
Sbjct: 415 HGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALEL 474

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +R +      I  D      +L+A   SS   S+L   KEIH  +LR G    V I   L
Sbjct: 475 FRDVAKKRMEI--DEMILGSILRA---SSVLKSMLI-VKEIHCHILRKGLLDTV-IQNEL 527

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           +D+Y +   + YA  VF  +  K+VVSW++MI+  A NG   EA+ELFR M+     L  
Sbjct: 528 VDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMV--ETGLSA 585

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +SV ++ +L A A+L+AL +G+ IH Y+LR+G      +  A+V MYA CG L+  + VF
Sbjct: 586 DSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVF 645

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D ++++ ++ + S+I++YG+HG G  A+++F +M +  VSP  ISF+++L ACSHAGL++
Sbjct: 646 DRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLD 705

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG+   + M  E+ + P  EHY C+VD+LGRAN + EA + ++ ++ EP  +VW +LL +
Sbjct: 706 EGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAA 765

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CR H   E+ E A++RL ELEP N GN VL+++V+A    W++V++V+  ++A G++K P
Sbjct: 766 CRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHP 825

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM-KEKGYVPQTKVVLYDLDAEEK 587
           G S IE+  K++ F + D+ HP+ ++++  L  ++ ++ +E GYV  TK VL+++D  EK
Sbjct: 826 GCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEK 885

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
            +++ GHSE++A+A+GL+ T     +RITKNLR+C DCH+F K +SK   ++I++RD NR
Sbjct: 886 VQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANR 945

Query: 648 FHHFRNGVCSCGDYW 662
           FHHF +G+CSCGD W
Sbjct: 946 FHHFESGLCSCGDSW 960



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 174/348 (50%), Gaps = 18/348 (5%)

Query: 60  CKQGNLRQALDVLSI-EPNPTQHTYELLLLSCTHHNSLSDALNVHSHL--TDNGFDQDPF 116
           C  G L +A   L + E N     +  +L  C    ++S    +HS +  T   F+ D F
Sbjct: 59  CFDGVLTEAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-F 117

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY--RRMNG 174
           L  KL+ +Y    S+DDA  VFD+   RT + WN +  A    G     L LY   R+ G
Sbjct: 118 LAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEG 177

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
              G+ S    +  +LKAC         ++ G E+H+ +++ GY+    I+  L+ MYA+
Sbjct: 178 VPLGLSS----FPALLKACAK----LRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAK 229

Query: 235 FGCVMYAGFVFSQMAVK-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
              +  A  +F     K + V W+++++ Y+ +G + E LELFREM M      PNS T+
Sbjct: 230 NDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGP--APNSYTI 287

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGL-DSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           VS L AC   +  + GK IH  +L+     S L V +AL+ MY RCGK+   + +   M+
Sbjct: 288 VSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMN 347

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
             DVV+WNSLI  Y  +    +A++ F +MI  G     +S  S++ A
Sbjct: 348 NADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 140/286 (48%), Gaps = 13/286 (4%)

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT-TLIDMYARFGCVMYAGF 243
            + YVL+ C         +  G+++H+ + +   +  +  +   L+ MY + G +  A  
Sbjct: 82  AFAYVLELCGKRRA----VSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEK 137

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF +M  +   +W+ MI  Y  NG    AL L+  M +E   L  +S    ++L+ACA L
Sbjct: 138 VFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFP--ALLKACAKL 195

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD-HMDKRDVVSWNSL 362
             +  G  +H  +++ G  S   +V+ALV+MYA+   L   + +FD   +K D V WNS+
Sbjct: 196 RDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSI 255

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           +SSY   G   + +++F+EM   G +P+  + VS L AC      + GK +  S+ K   
Sbjct: 256 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSST 315

Query: 423 IRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
              S E Y C  ++ +  R  K+ +A +I+  +        W SL+
Sbjct: 316 --HSSELYVCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 358


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/646 (34%), Positives = 357/646 (55%), Gaps = 60/646 (9%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV--YS 126
           ++ L  +PN   +   L +       S+ +   VH+ L   G   D  + T+++ +   S
Sbjct: 1   MNALMFQPNTASYYPRLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATS 60

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALT-LAGRGEEVLELYRRMNGTGTGIRSDRFT 185
            F  +  A  VFD+   R  + WN + RAL     R  + L ++ +M    T +  ++FT
Sbjct: 61  DFRDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEAT-VEPNQFT 119

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL----------------- 228
           +  VLKAC       + L  GK++H  +L+ G      ++T L                 
Sbjct: 120 FPSVLKACAV----MARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLF 175

Query: 229 ------------------------------IDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
                                         +D YAR G +  A  +F +MA ++VVSW+ 
Sbjct: 176 YRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNV 235

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           MI+ YA+NG   EA+E+F  M M+  D+ PN VT+VSVL A + L  LE GK +H Y  +
Sbjct: 236 MISGYAQNGFYKEAIEIFHRM-MQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEK 294

Query: 319 RGL--DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
             +  D +L   SALV MYA+CG +E    VF+ + + +V++WN++I    +HG      
Sbjct: 295 NKIRIDDVLG--SALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIF 352

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
                M   G+SPS ++++++L ACSHAGLV+EG+  F  M     ++P +EHY CMVDL
Sbjct: 353 NYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDL 412

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA  LEEA ++I ++ ++P   +W +LLG+ ++H N+++  RA++ L ++ P ++G Y
Sbjct: 413 LGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAY 472

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           V L+++YA++  WD V  V+ +++   ++K PG S IE+   ++ F+  D+ H + + +H
Sbjct: 473 VALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIH 532

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
           ++L  +S ++  +G++P T  VL  +D + KE ++  HSEK+AVAFGLI+T     + I 
Sbjct: 533 SMLEEISNKLSLEGHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIV 592

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+CEDCHS  K ISK   ++I++RD  RFHHF +G CSC DYW
Sbjct: 593 KNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 157/371 (42%), Gaps = 61/371 (16%)

Query: 67  QALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV-- 124
           Q L   ++EPN  Q T+  +L +C     L++   VH  L   G   D F+VT L+ +  
Sbjct: 106 QMLSEATVEPN--QFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYV 163

Query: 125 ------------YSHFDSVDD---------------------------------ARHVFD 139
                       Y + + VDD                                 AR +FD
Sbjct: 164 MCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFD 223

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           +  +R++  WN +       G  +E +E++ RM   G  +  +R T   VL A       
Sbjct: 224 RMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGD-VLPNRVTLVSVLPAI----SR 278

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
             +L+ GK +H    ++       + + L+DMYA+ G +  A  VF ++   NV++W+A+
Sbjct: 279 LGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAV 338

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I   A +G A +         ME   + P+ VT +++L AC+    +++G+     ++  
Sbjct: 339 IGGLAMHGKANDIFNYLSR--MEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNS 396

Query: 320 -GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH---GYGGK 374
            GL   +     +V +  R G LE  + +  +M  K D V W +L+ +  +H     G +
Sbjct: 397 VGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMR 456

Query: 375 AIQIFKEMIYH 385
           A ++  +M  H
Sbjct: 457 AAEVLMQMAPH 467


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/551 (39%), Positives = 316/551 (57%), Gaps = 9/551 (1%)

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            D F+    +++Y     +  AR +FD+   R +  WNA+     L GR  E +E Y  +
Sbjct: 154 DDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGL 213

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
            G G     +  +      AC     G + L  G++ +  V + G+   V +  +++D Y
Sbjct: 214 RGAGG--MPNVVSVCAFFNACA----GMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFY 267

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
            +  CV  A  VF  M V+N VSW +M+  YA+NG   EA  ++        +  P    
Sbjct: 268 GKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEE--PTDFM 325

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           + SVL  CA L  L+ G+ +H   +R  +DS + V SALV MY +CG +E  + VF  M 
Sbjct: 326 VSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMP 385

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY-HGVSPSPISFVSVLGACSHAGLVEEGK 411
           +R++V+WN++I  Y   G    A+ +F +MI     +P+ I+ V+VL ACS  GL +EG 
Sbjct: 386 QRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGY 445

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
            LF++M+    I P +EHYAC+VDLL RA   E A KII+ + + P   VWG+LLG C++
Sbjct: 446 ELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKM 505

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H   EL   A+++LFEL+P ++GN+VLL+++ A+A  W E   V++ ++  G++K PGRS
Sbjct: 506 HGKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRS 565

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            I  K  ++ F + D  H    ++ ALL  L  +M+  GY+P T+  LYDL+ EEKE  V
Sbjct: 566 WITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAGYMPDTQYALYDLEEEEKESEV 625

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
             HSEKLA+AFGLI    G  IRI KNLR+C DCH   KFIS  A +EI+VRD N FHHF
Sbjct: 626 FQHSEKLALAFGLICIPPGIPIRIMKNLRICVDCHRAFKFISGIAGREIIVRDNNMFHHF 685

Query: 652 RNGVCSCGDYW 662
           +N  CSC DYW
Sbjct: 686 KNYECSCKDYW 696



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 174/392 (44%), Gaps = 11/392 (2%)

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
           PFL   L+N+YS  D    A          T+  + A         R  + L  +  M  
Sbjct: 53  PFLCAHLVNLYSKLDLPGAAAASLAADPSPTVVSYTAFISGAAQHARPLQALSAFAAM-- 110

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY-NGIVHIMTTLIDMYA 233
              G+R + FT+    KA  ++         G ++HA  LR GY      +    +DMY 
Sbjct: 111 LRLGLRPNDFTFPSAFKAAASAP---PRSAAGTQLHALALRFGYLPDDAFVSCAALDMYF 167

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + GC+  A  +F +M  +NVV+W+A++     +G   E +E +    +      PN V++
Sbjct: 168 KTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAY--FGLRGAGGMPNVVSV 225

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
            +   ACA +  L  G+  +G++ + G    + V +++V  Y +C  +   + VFD M  
Sbjct: 226 CAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGV 285

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           R+ VSW S++ +Y  +G   +A  ++      G  P+     SVL  C+    ++ G+ L
Sbjct: 286 RNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRAL 345

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473
             ++     I  ++   + +VD+ G+   +E+A ++  ++  +     W +++G      
Sbjct: 346 -HAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMP-QRNLVTWNAMIGGYAHIG 403

Query: 474 NVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           +   A     ++   + T A NY+ L +V  A
Sbjct: 404 DAHNALSVFDKMIMGQET-APNYITLVNVLTA 434



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 129/284 (45%), Gaps = 9/284 (3%)

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
           +C    +LS     +  +   GF +D  +   +++ Y     V  AR VFD    R    
Sbjct: 231 ACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVS 290

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           W ++  A    G  EE   +Y  +     G     F  + VL  C     G   L  G+ 
Sbjct: 291 WCSMVVAYAQNGAEEEAFFVY--LGARRAGEEPTDFMVSSVLTTCA----GLLGLDLGRA 344

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           +HA  +R   +  + + + L+DMY + G +  A  VF +M  +N+V+W+AMI  YA  G 
Sbjct: 345 LHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGD 404

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPV 327
           A  AL +F +MIM   +  PN +T+V+VL AC+     ++G ++      R G++  +  
Sbjct: 405 AHNALSVFDKMIM-GQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEH 463

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVS-WNSLISSYGVHG 370
            + +V +  R G  E    +   M  R  +S W +L+    +HG
Sbjct: 464 YACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHG 507



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 7/186 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PT      +L +C     L     +H+    +  D + F+ + L+++Y     ++DA  V
Sbjct: 321 PTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQV 380

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F +  +R +  WNA+       G     L ++ +M   G     +  T   VL AC    
Sbjct: 381 FFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMI-MGQETAPNYITLVNVLTACSRG- 438

Query: 198 CGFSLLKHGKEIHASV-LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS- 255
               L K G E+  ++  R G    +     ++D+  R G    A  +   M ++  +S 
Sbjct: 439 ---GLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISV 495

Query: 256 WSAMIA 261
           W A++ 
Sbjct: 496 WGALLG 501


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 328/548 (59%), Gaps = 7/548 (1%)

Query: 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
           F+  +L+  Y        A  +FD+   R +  WN+L    +  G   +  E+  RM  +
Sbjct: 67  FIGDQLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMIS 126

Query: 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
             G R +  T+  ++ ACV         + G+ IH  V++ G    V ++   I+ Y + 
Sbjct: 127 EVGFRPNEVTFLSMISACVYGGSK----EEGRCIHGLVMKFGVLEEVKVVNAFINWYGKT 182

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G +  +  +F  +++KN+VSW+ MI  + +NG+A + L  F       H+  P+  T ++
Sbjct: 183 GDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHE--PDQATFLA 240

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           VL++C  +  +   + IHG I+  G      + +AL+ +Y++ G+LE    VF  +   D
Sbjct: 241 VLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPD 300

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
            ++W +++++Y  HG+G  AI+ F+ M+++G+SP  ++F  +L ACSH+GLVEEGK  FE
Sbjct: 301 SMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFE 360

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
           +M K + I P ++HY+CMVDLLGR+  L++A  +I+++ +EP   VWG+LLG+CR++ + 
Sbjct: 361 TMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDT 420

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           +L  +A++RLFELEP +  NYV+L+++Y+A+ +W +  R++ L++ +GL +  G S IE 
Sbjct: 421 QLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEH 480

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMK-EKGYVPQTKVVLYDLDAEEKERIVLGH 594
             K++ FV  D  HP+ E++   L  +  +MK E GY  +T+ VL+D+  + KE ++  H
Sbjct: 481 GNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQH 540

Query: 595 SEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNG 654
           SEK+A+AFGL+  S  E I I KNLR+C DCH   K IS    + I++RD  RFHHF +G
Sbjct: 541 SEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDG 600

Query: 655 VCSCGDYW 662
            CSC DYW
Sbjct: 601 SCSCSDYW 608



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 139/300 (46%), Gaps = 21/300 (7%)

Query: 53  NELIQSLCKQGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N LI     +G L +  +VLS      +   P + T+  ++ +C +  S  +   +H  +
Sbjct: 101 NSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLV 160

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF---RALTLAGRGE 163
              G  ++  +V   IN Y     +  +  +F+    + +  WN +        LA +G 
Sbjct: 161 MKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGL 220

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
               + RR+     G   D+ T+  VL++C     G   L  G  IH  ++  G++G   
Sbjct: 221 AYFNMSRRV-----GHEPDQATFLAVLRSC--EDMGVVRLAQG--IHGLIMFGGFSGNKC 271

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           I T L+D+Y++ G +  +  VF ++   + ++W+AM+A YA +G   +A++ F  M+   
Sbjct: 272 ITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMV--H 329

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLE 342
           + + P+ VT   +L AC+    +E+GK     + +R  +D  L   S +V +  R G L+
Sbjct: 330 YGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQ 389



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 90/232 (38%), Gaps = 41/232 (17%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P Q T+  +L SC     +  A  +H  +   GF  +  + T L+++YS    ++D+  V
Sbjct: 233 PDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTV 292

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F +        W A+  A    G G + ++ +  M     GI  D  T+T++L AC  S 
Sbjct: 293 FHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELM--VHYGISPDHVTFTHLLNACSHS- 349

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
               L++ GK               H   T+   Y                    +  +S
Sbjct: 350 ---GLVEEGK---------------HYFETMSKRYR---------------IDPRLDHYS 376

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            M+    R+G+  +A  L +EM ME     P+S    ++L AC      + G
Sbjct: 377 CMVDLLGRSGLLQDAYGLIKEMPME-----PSSGVWGALLGACRVYKDTQLG 423


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/631 (36%), Positives = 370/631 (58%), Gaps = 25/631 (3%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQA----LDVLSIEPNPTQHTYELLLLSCTHHNSLSDA 99
           P S+S    N LI +  ++G+ + A    L++     +    T   ++ +C  +  L   
Sbjct: 103 PDSVS---YNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQ 159

Query: 100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD-KTRRRTIYVWNALFRALTL 158
           L+  S +T  G D    +   LI  YS    + +AR +F   +  R    WN++  A   
Sbjct: 160 LHALSVVT--GLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQ 217

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
              G + LELY  M  T  G+  D FT   VL A          L  G + HA +++ GY
Sbjct: 218 HREGSKALELYLEM--TVRGLIVDIFTLASVLTAFT----NVQDLLGGLQFHAKLIKSGY 271

Query: 219 NGIVHIMTTLIDMYARFG-CVMYAGFVFSQMAVKNVVSWSAMIACYA-RNGMAFEALELF 276
           +   H+ + LID+Y++ G C++    VF +++  ++V W+ MI+ Y+    ++ EALE F
Sbjct: 272 HQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECF 331

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS-ILPVVSALVTMY 335
           R++    H   P+  ++V V+ AC+ +++  QG+ +HG  L+  + S  + V +AL+ MY
Sbjct: 332 RQLQGVGHR--PDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMY 389

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ++CG L   + +FD M + + VS+NS+I+ Y  HG G +++ +F+ M+    +P+ I+F+
Sbjct: 390 SKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFI 449

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
           SVL AC+H G VE+GK+ F  M+++  I P   H++CM+DLLGRA KL EA ++IE +  
Sbjct: 450 SVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPF 509

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
           +PG   W +LLG+CRIH NVELA +A+ RL +L+P NA  YV+LA++Y+      +   V
Sbjct: 510 DPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASV 569

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT 575
           ++L+  RG++K PG S IEV R+++ FV+ D FHP  +++   L  +  ++K+ GY P+ 
Sbjct: 570 RKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEV 629

Query: 576 KVVLYDLDA---EEKERIVLG-HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKF 631
           +      D    + +E + LG HSEKLAV+FGL++T +GE I + KNLR+C DCH+  K+
Sbjct: 630 RSASVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKY 689

Query: 632 ISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IS+   +EI VRD +RFH F++G CSCG YW
Sbjct: 690 ISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 103/454 (22%), Positives = 190/454 (41%), Gaps = 43/454 (9%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           H++   L +C  H  L    ++H+    +      +L    + +YS    +  AR VFD 
Sbjct: 9   HSFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDH 68

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLEL------------------YRRMNGTGTGIR-- 180
           T    ++ +N L  A       E   +L                  Y R   T    +  
Sbjct: 69  THDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLF 128

Query: 181 ---------SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231
                     D FT + ++ AC        L+   +++HA  +  G +  V +   LI  
Sbjct: 129 LEMREAFLDMDGFTLSGIITAC---GINVGLI---RQLHALSVVTGLDSYVSVGNALITS 182

Query: 232 YARFGCVMYAGFVFSQMAV-KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           Y++ G +  A  +F  ++  ++ VSW++M+  Y ++    +ALEL+ EM +    L  + 
Sbjct: 183 YSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRG--LIVDI 240

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG-QCVFD 349
            T+ SVL A   +  L  G   H  +++ G      V S L+ +Y++CG   L  + VFD
Sbjct: 241 FTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFD 300

Query: 350 HMDKRDVVSWNSLISSYGVH-GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
            +   D+V WN++IS Y ++     +A++ F+++   G  P   S V V+ ACS+     
Sbjct: 301 EISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPS 360

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           +G+ +     K  +    +     ++ +  +   L + AK + D   E     + S++  
Sbjct: 361 QGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRD-AKTLFDTMPEHNTVSYNSMIAG 419

Query: 469 CRIHCNVELAERASKRLFELE--PTNAGNYVLLA 500
              H     +    +R+ E++  PTN     +LA
Sbjct: 420 YAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLA 453


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/591 (37%), Positives = 343/591 (58%), Gaps = 17/591 (2%)

Query: 72  LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV 131
           LSI+P+    T   ++ +C           +HS++    +D +  +   LI +Y      
Sbjct: 230 LSIDPDLMTMTS--VISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHW 287

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
            +A  VF     R +  W  +          ++ LE Y+ M  TGT    D  T   VL 
Sbjct: 288 KEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGT--MPDEVTIASVLS 345

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           AC +       L  G ++H    R G+   V +  +LIDMY++   +  A  +F Q+  K
Sbjct: 346 ACAS----LGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDK 401

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +V+SW+++I     N   FEAL  FR+MI++S    PNSVT++S L ACA + AL  GK 
Sbjct: 402 DVISWTSVINGLRINNRCFEALIFFRKMILKSK---PNSVTLISALSACARVGALMCGKE 458

Query: 312 IHGYILRRGL--DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           IH + L+ G+  D  LP  +A++ +Y RCG++      F+ ++++DV +WN L++ Y   
Sbjct: 459 IHAHALKAGMGFDGFLP--NAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQK 515

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G G   +++FK M+   ++P  ++F+S+L ACS +G+V EG   F+ M+  + I P+++H
Sbjct: 516 GKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKH 575

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
           YAC+VDLLGRA KL EA + IE + I+P P +WG+LL +CRIH +V L E A++ +F+ +
Sbjct: 576 YACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQD 635

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFH 549
             + G Y+LL ++YA +  WDEV +V+R ++  GL   PG S +EVK K+++F+S D FH
Sbjct: 636 AESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFH 695

Query: 550 PQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSK 609
           PQ ++++ +L     +MK  G+  Q +    D     K  I  GHSE+ A+A+ LIN++ 
Sbjct: 696 PQMQEINVVLEGFYEKMKTSGFNGQ-ECSSMDGIQTSKADIFCGHSERQAIAYSLINSAP 754

Query: 610 GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           G  I +TKNL +C+ CHS  KFISK   +EI VRD  +FHHF++G+CSCGD
Sbjct: 755 GMPIWVTKNLYMCQSCHSTVKFISKIVRREISVRDTEQFHHFKDGLCSCGD 805



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/428 (30%), Positives = 213/428 (49%), Gaps = 21/428 (4%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N  +  LC  GNL QAL  L+    ++    +  +  L+  C +    S+   V   +  
Sbjct: 2   NSRLLQLCLSGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLS 61

Query: 109 NGFDQDPF-LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
           +        L   L++++  F  V +A +VF +   R ++ WN L    T AG  +E L 
Sbjct: 62  SLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALC 121

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           LY R+     GIR D +T+  VL++C     G   L  G+E+HA V+R  ++  V ++  
Sbjct: 122 LYHRI--LWAGIRPDVYTFPSVLRSCA----GAMDLVRGREVHAHVVRFDFDMDVDVVNA 175

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           LI MY + G V+ A  +F +M  ++ +SW+AMI+ Y  N    E LELF  M   S D  
Sbjct: 176 LITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSID-- 233

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+ +TM SV+ AC  L     G  +H Y++R   D  + V ++L+ MY   G  +  + V
Sbjct: 234 PDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESV 293

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F  M+ RDVVSW ++IS    +    KA++ +K M   G  P  ++  SVL AC+  G +
Sbjct: 294 FSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQL 353

Query: 408 EEGKMLFE-SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV--WGS 464
           + G  L E + R  H++   V +   ++D+  +  ++E+A +I   +   P   V  W S
Sbjct: 354 DMGMKLHELAERTGHILYVVVAN--SLIDMYSKCKRIEKALEIFHQI---PDKDVISWTS 408

Query: 465 LLGSCRIH 472
           ++   RI+
Sbjct: 409 VINGLRIN 416


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/588 (36%), Positives = 340/588 (57%), Gaps = 10/588 (1%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           +PNP   T  L    C     L     +H        D +P +   L+++Y+    ++DA
Sbjct: 248 KPNPFVLTSVLKAAVCLSSAVLGKG--IHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDA 305

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R VF+      + +W+ L      + + E+  E++ RM    + +  + F+ + VL+AC 
Sbjct: 306 RTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRM--MRSSVVPNEFSLSGVLQACA 363

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
                 + L  G++IH  V++ GY   + +   L+D+YA+   +  +  +F  +   N V
Sbjct: 364 ----NVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEV 419

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           SW+ +I  Y ++G A +AL +F+EM   +  +    VT  SVL+ACA  A+++    IH 
Sbjct: 420 SWNTIIVGYCQSGFAEDALSVFQEM--RAAHVLSTQVTFSSVLRACANTASIKHTVQIHS 477

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            I +   ++   V ++L+  YA+CG +     VF+ + + DVVSWN++IS Y +HG    
Sbjct: 478 LIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATD 537

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A+++F  M      P+ ++FV++L  C   GLV +G  LF SM  +H I+PS++HY C+V
Sbjct: 538 ALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIV 597

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
            LLGRA +L +A K I D+   P P VW +LL SC +H NV L + +++++ E+EP +  
Sbjct: 598 RLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDET 657

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
            YVLL+++YAAA + D+V  +++ +   G++K  G S +E+K ++++F      HP    
Sbjct: 658 TYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRI 717

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
           ++A+L  L+ +   +GYVP   VVL+D+D EEK R++  HSE+LA+A+GL  T  G  IR
Sbjct: 718 INAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIR 777

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I KNLR C DCH+  K ISK   +EI+VRD+NRFHHF  G+CSCGDYW
Sbjct: 778 IMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 185/399 (46%), Gaps = 15/399 (3%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG--FDQDPFLVTKLINVYSHFDSVDD 133
           P    +    LL  C           VH+ +   G     D F    L+N+Y+    +  
Sbjct: 43  PKLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAA 102

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR +FD    R +  +  L +   L G  EE   L+RR+   G  +  + F  T +LK  
Sbjct: 103 ARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEV--NHFVLTTILKVL 160

Query: 194 VA-SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
           VA  + G +       IHA   + G++    + ++LID Y+  G V +A  VF  +  K+
Sbjct: 161 VAMDAPGLTCC-----IHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKD 215

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
            V+W+AM++CY+ N +  +AL  F +M M      PN   + SVL+A   L++   GK I
Sbjct: 216 AVTWTAMVSCYSENDIPEDALNTFSKMRMAGAK--PNPFVLTSVLKAAVCLSSAVLGKGI 273

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           HG  ++   D+   V  AL+ MYA+CG +E  + VF+ +   DV+ W+ LIS Y      
Sbjct: 274 HGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQN 333

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +A ++F  M+   V P+  S   VL AC++   ++ G+ +   + K           A 
Sbjct: 334 EQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNAL 393

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL-GSCR 470
           M D+  +   +E + +I   LR +     W +++ G C+
Sbjct: 394 M-DVYAKCRNMENSLEIFRSLR-DANEVSWNTIIVGYCQ 430


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/612 (36%), Positives = 338/612 (55%), Gaps = 49/612 (8%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGF--DQDPFLVTKLINVYSHFDSVDDARHVFDKTRR 143
           LL SC+   +   A  +H+ +   G     D  +  +L   Y+    +D +  +  +TR 
Sbjct: 295 LLTSCS---TARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRD 351

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
            T   + +   A +  G     L L   M     G+     T +  L AC         L
Sbjct: 352 PTAIFYTSAIHAHSSRGHRLPALALLSDM--LAQGLLPTAHTLSASLPACRG-------L 402

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM--------------- 248
             G+ +H    +    G  ++ T L+ MYAR G    A  +F  M               
Sbjct: 403 SPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTC 462

Query: 249 -----------------AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
                              K+ V W+AMI  Y ++G   EAL LFR M+    +  P+ V
Sbjct: 463 YADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVE--PDEV 520

Query: 292 TMVSVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           T+V VL A A L  +E GK +H Y+   R +   + V +AL+ MY +CG L     VF  
Sbjct: 521 TVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHG 580

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           +  +D+V WN++I+ Y +HG   KA+++F +    G+ P+ I+F+ +L ACSH+G+VEEG
Sbjct: 581 IGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEG 640

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           +  F+SM +E+ I P +EHY CMVDLLGRA  ++EA  +++ ++I P   +W SLL +CR
Sbjct: 641 REFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACR 700

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
           +H N+ L ++ +  L      N+G Y+LL+++YAA   W EV RV+ +++A G+QK PG 
Sbjct: 701 LHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGC 760

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI 590
           S IE+ R++Y FV+ D  HP+ ++++ +L  ++  +KE G+VPQT++VL+DLD   KE+ 
Sbjct: 761 SSIEIDREVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKA 820

Query: 591 VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 650
           +  HSEKLA+AFGLI+T  G TI+I KNLR C DCH+  K IS+   ++I+ RD NRFHH
Sbjct: 821 LAVHSEKLALAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHH 880

Query: 651 FRNGVCSCGDYW 662
           F +G CSCGDYW
Sbjct: 881 FVDGSCSCGDYW 892


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/530 (38%), Positives = 323/530 (60%), Gaps = 10/530 (1%)

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF +    T+   N + RA +L+    E   L+R +    + + ++  + ++ LK C+ S
Sbjct: 68  VFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLR-RNSSLPANPLSSSFALKCCIKS 126

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
                 L  G +IH  +   G+     +MTTL+D+Y+       A  VF ++  ++ VSW
Sbjct: 127 GD----LLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSW 182

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLC--PNSVTMVSVLQACAALAALEQGKMIHG 314
           + + +CY RN    + L LF +M  +  D C  P+ VT +  LQACA L AL+ GK +H 
Sbjct: 183 NVLFSCYLRNKRTRDVLVLFDKMKNDV-DGCVKPDGVTCLLALQACANLGALDFGKQVHD 241

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
           +I   GL   L + + LV+MY+RCG ++    VF  M +R+VVSW +LIS   ++G+G +
Sbjct: 242 FIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKE 301

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK-EHMIRPSVEHYACM 433
           AI+ F EM+  G+SP   +   +L ACSH+GLV EG M F+ MR  E  I+P++ HY C+
Sbjct: 302 AIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCV 361

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLLGRA  L++A  +I+ + ++P   +W +LLG+CR+H +VEL ER    L EL+   A
Sbjct: 362 VDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEA 421

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           G+YVLL + Y+    W++V  ++ L++ + +   PG S IE++  ++ F+  D  HP+ E
Sbjct: 422 GDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKE 481

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG-HSEKLAVAFGLINTSKGET 612
           +++ +L  ++ ++K  GYV +    L++L++EE++   L  HSEKLA+AFG++ T  G T
Sbjct: 482 EIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTT 541

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IR+TKNLR C DCH+F KF+S   ++ ++VRD +RFHHF+ G CSC D+W
Sbjct: 542 IRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 144/303 (47%), Gaps = 14/303 (4%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
           S+  NP   ++ L    C     L   L +H  +  +GF  D  L+T L+++YS  ++  
Sbjct: 108 SLPANPLSSSFALK--CCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENST 165

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG-IRSDRFTYTYVLK 191
           DA  VFD+  +R    WN LF       R  +VL L+ +M     G ++ D  T    L+
Sbjct: 166 DACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQ 225

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           AC         L  GK++H  +  +G +G +++  TL+ MY+R G +  A  VF  M  +
Sbjct: 226 ACA----NLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRER 281

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           NVVSW+A+I+  A NG   EA+E F EM+     + P   T+  +L AC+    + +G M
Sbjct: 282 NVVSWTALISGLAMNGFGKEAIEAFNEML--KFGISPEEQTLTGLLSACSHSGLVAEGMM 339

Query: 312 IHGYILRRGLDSILPVV---SALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYG 367
                +R G   I P +     +V +  R   L+    +   M+ K D   W +L+ +  
Sbjct: 340 FFDR-MRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACR 398

Query: 368 VHG 370
           VHG
Sbjct: 399 VHG 401


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/534 (36%), Positives = 332/534 (62%), Gaps = 9/534 (1%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           H YE  + +C    +L +   VH+ +    +    FL T+L+ +Y    ++DDAR+V D+
Sbjct: 11  HEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR 70

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
              R++  W  +    +   R  E L+L+ +M      +R+      Y L   + S  G 
Sbjct: 71  MPERSVVSWTTMISGYSQTERHVEALDLFIKM------LRAGCIPNEYTLATVLTSCSGP 124

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             +  GK++H+ +++  +   + + ++L+DMYA+   +  A  VF  +  ++VVS +A+I
Sbjct: 125 QSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAII 184

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           + YA+ G+  EAL+LFR++  E   +  N VT  +++ A + LA+L+ GK +H  ILR+ 
Sbjct: 185 SGYAQKGLDEEALDLFRQLYSEG--MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKE 242

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           L   + + ++L+ MY++CGKL   + VFD+M +R VVSWN+++  YG HG G + I +FK
Sbjct: 243 LPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK 302

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           ++ +  V P  ++ ++VL  CSH GLV+EG  +F+++ KE        HY C++DLLGR+
Sbjct: 303 DL-HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRS 361

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            +LE+A  +IE++  E  P +WGSLLG+CR+H NV + E  +++L E+EP NAGNYV+L+
Sbjct: 362 GRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILS 421

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YAAA MW +V +V++L+  + + K PG+S I + + +++F S + FHP  + ++A + 
Sbjct: 422 NIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIK 481

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
            +  ++K  G+VP    VL+D+D E+KER++LGHSEKLA+ FGL+NT  G TIR
Sbjct: 482 EIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIR 535



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 157/306 (51%), Gaps = 33/306 (10%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P ++T   +L SC+   S+     VHS L    F+   F+ + L+++Y+  +++ +AR V
Sbjct: 109 PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRV 168

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    R +    A+       G  EE L+L+R++     G++ +  T+T ++ A     
Sbjct: 169 FDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQL--YSEGMQCNHVTFTTLVTAL---- 222

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G + L +GK++HA +LR      V +  +LIDMY++ G ++Y+  VF  M  ++VVSW+
Sbjct: 223 SGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWN 282

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AM+  Y R+G+  E + LF+++  E   + P+SVT+++VL  C+           HG ++
Sbjct: 283 AMLMGYGRHGLGHEVISLFKDLHKE---VKPDSVTLLAVLSGCS-----------HGGLV 328

Query: 318 RRGLDSILPVV---SAL---------VTMYARCGKLELGQCVFDHMDKRDVVS-WNSLIS 364
             GLD    VV   SAL         + +  R G+LE    + ++M      S W SL+ 
Sbjct: 329 DEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLG 388

Query: 365 SYGVHG 370
           +  VH 
Sbjct: 389 ACRVHA 394


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/587 (36%), Positives = 332/587 (56%), Gaps = 11/587 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P+  T+  LL +    +       VH  +    F  + F+   L++ YS  D VD+   +
Sbjct: 239 PSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKL 298

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F +        +N +  +    G+ +E  +L+R++  T    R DR  + +     +A+S
Sbjct: 299 FYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFT----RFDRRQFPFATLLSIATS 354

Query: 198 CGFSL-LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
              SL L+ G++IH   +  G N    +   L+DMYA+      A  +F  +A K+ V W
Sbjct: 355 ---SLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPW 411

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           +AMI+ Y + G   E + +F +M      +  +  T  S+L+ACA LA++  G+ +H  +
Sbjct: 412 TAMISAYVQKGKHEEGINVFSDM--RRTGVPADQATFASILRACANLASISLGRQLHSLL 469

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           +R G  S +   SAL+  YA+CG +      F  M +R+ VSWN+LIS+Y  +G     +
Sbjct: 470 IRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTL 529

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
             F++MI  G  P  +SF+SVL ACSH G VEE    F SM + + + P  EHY  MVD+
Sbjct: 530 NSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDV 589

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP-TNAGN 495
           L R  + +EA K++ ++  EP   +W S+L SCRIH N ELA++A+ RLF +E   +A  
Sbjct: 590 LCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAP 649

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           Y+ ++++YA A  WD V +VK+ +  RG++KVP  S +E+K + + F + D+ HP+ +++
Sbjct: 650 YINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKI 709

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
              +  LS EM++KGY P T   L+D+D   K   +  HSE+ A+AF L+NT  G  I +
Sbjct: 710 LRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVV 769

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR C DCH+  K IS+   +EI+VRD +RFHHF++GVCSCGDYW
Sbjct: 770 MKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 194/435 (44%), Gaps = 42/435 (9%)

Query: 28  KPSSVCCCVSLNSSTTPTSLSSRNKNELIQS-LCKQGNLRQALDVLSIEPNPTQHTYELL 86
           KP       +L    +P    S N N LI + + K G            PN  +  +++ 
Sbjct: 2   KPYRATLFQNLVLRNSPAPKPSLNSNHLIDAHIVKTG----------FNPNTCRSNFQV- 50

Query: 87  LLSCTHHNSLSDALNVHSHLTDNGFDQDP----FLVTKLINVYSHFDSVDDARHVFDKTR 142
                 +N L     VH+H     FDQ P      +  +I+ +  F  +  AR +FD   
Sbjct: 51  ------NNFLERGDLVHAHQV---FDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMV 101

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
            RT   W  L      + + +E   LY  M   G  I  D  T   +L        GF  
Sbjct: 102 ERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGG--IEPDYVTLVTLLS-------GFGE 152

Query: 203 LKHGK---EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
           L+      +IH  V++ GY   + +  +L+D Y +  C+  A  +F  M  K+ V+++++
Sbjct: 153 LETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSL 212

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           +  Y+  G+  EA+ELF E  + +  + P+  T  ++L A   L   + G+ +HG++L+ 
Sbjct: 213 MTGYSNEGLNEEAIELFLE--LHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKT 270

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
                + V +AL+  Y++  +++    +F  M + D +S+N +I+SY  +G   ++  +F
Sbjct: 271 NFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLF 330

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHMIRPSVEHYACMVDLLG 438
           +++ +         F ++L   + +  +  G+ +  +++         VE+   +VD+  
Sbjct: 331 RKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN--ALVDMYA 388

Query: 439 RANKLEEAAKIIEDL 453
           + N  +EA KI +++
Sbjct: 389 KCNGDKEAQKIFDNI 403


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/573 (37%), Positives = 329/573 (57%), Gaps = 12/573 (2%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDKTRRRTIYVWNA 151
           N+L+    + +H+  NG    P +   ++N    S   S+  A+H+F          WN+
Sbjct: 20  NNLTRLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQAWNS 79

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           + R    +    + +  Y RM         D FT+++ LKAC         LK  +E+H 
Sbjct: 80  IIRGFAQSPSPVQAIFYYNRMLFDSVS-GPDTFTFSFTLKACER----IKALKKCEEVHG 134

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
           S++R GY   V + T L+  Y R GCV  A  VF  M  +++V+W+AMI+CY++ G   E
Sbjct: 135 SIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQE 194

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           AL ++    M + ++  +  T+V +L +C+ + AL  G  +H     +GL   + V +AL
Sbjct: 195 ALRVYD--YMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNAL 252

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MYA+CG L+    VF+ M  RD  +WNS+I  +GVHG+G +AI  F +M+  GV P+ 
Sbjct: 253 IDMYAKCGSLDGALEVFNGM-PRDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNS 311

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           I+F+ +L  CSH GLVEEG   F  M  +  ++P ++HY C+VD+ GRA KLE+A +II 
Sbjct: 312 IAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIG 371

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
           D   +  P +W  LL S +IH NV + E A + L +L   NAG+ VLLA +YA A+    
Sbjct: 372 DSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATIYAGANDEQG 431

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGY 571
           V R+++L++ +G++  PG S IEV  +++ FV  D+ HP  E ++  L  ++ +    GY
Sbjct: 432 VARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKATMAGY 491

Query: 572 VPQTKVVLYDLDAEEK--ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
           V      ++     E+  E     HSEKLA+AFGL  T +G ++RI KNLR+C DCH FT
Sbjct: 492 VEDKSQFIFHGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCHEFT 551

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KF+S+  N++I+VRD  RFHHF+ G+CSC DYW
Sbjct: 552 KFVSRAFNRDIIVRDRLRFHHFKGGLCSCRDYW 584



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 135/294 (45%), Gaps = 11/294 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+   L +C    +L     VH  +   G+++D  + T L+  Y     V+ AR V
Sbjct: 108 PDTFTFSFTLKACERIKALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMV 167

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD    R +  WNA+    + AG  +E L +Y  M     G+  D FT   +L +C  S 
Sbjct: 168 FDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGV--DGFTLVGLLSSC--SH 223

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G   L  G ++H      G    V +   LIDMYA+ G +  A  VF+ M  ++  +W+
Sbjct: 224 VG--ALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMP-RDAFTWN 280

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYI 316
           +MI  +  +G   EA+  F +M+     + PNS+  + +L  C+    +E+G +  H   
Sbjct: 281 SMIVGFGVHGFGDEAIYFFNQML--EAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMS 338

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELG-QCVFDHMDKRDVVSWNSLISSYGVH 369
            +  +   +     +V MY R GKLE   + + D   + D V W  L+SS  +H
Sbjct: 339 SKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLWRILLSSSKIH 392


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/581 (36%), Positives = 336/581 (57%), Gaps = 7/581 (1%)

Query: 82   TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
            T+   L +C++   L ++  VH+ +   GF     +   L+ +Y     + +A+ V    
Sbjct: 1151 TFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTM 1210

Query: 142  RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             +     WNAL           E ++ Y+ +   G  I ++  T   VL AC A      
Sbjct: 1211 PQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKG--IPANYITMVSVLGACSAPD---D 1265

Query: 202  LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            LLKHG  IHA ++  G+    ++  +LI MYA+ G +  + ++F  +  K+ ++W+AM+A
Sbjct: 1266 LLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVA 1325

Query: 262  CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
              A +G   EAL++F EM     +L  +  +    L A A LA LE+G+ +HG +++ G 
Sbjct: 1326 ANAHHGCGEEALKIFGEMRNVGVNL--DQFSFSGGLAATANLAVLEEGQQLHGLVIKLGF 1383

Query: 322  DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
            +S L V +A + MY +CG++     +      R  +SWN LIS++  HG   KA + F E
Sbjct: 1384 ESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHE 1443

Query: 382  MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
            M+  G  P  ++FVS+L AC+H GLV+EG   ++SM +E  + P +EH  C++DLLGR+ 
Sbjct: 1444 MLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSG 1503

Query: 442  KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
            +L  A   I+++ + P    W SLL +CRIH N+ELA + ++ L EL+P++   YVL ++
Sbjct: 1504 RLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSN 1563

Query: 502  VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
            V A +  W++V+ +++ + +  ++K P  S +++K K++SF   +++HPQ  ++ A L  
Sbjct: 1564 VCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGE 1623

Query: 562  LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
            L    KE GYVP T   L+D+D E+KE  +  HSE+LA+AFGLINT +  T+RI KNLR+
Sbjct: 1624 LMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRV 1683

Query: 622  CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            C DCHS  KF+S    ++I++RD  RFHHF  G CSCGDYW
Sbjct: 1684 CGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 151/468 (32%), Positives = 258/468 (55%), Gaps = 9/468 (1%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
            Q TY   L +CT    L   + V   +    F ++ F+ + L++ +S    ++DA ++F
Sbjct: 130 NQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLF 189

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
                R +  WNA+     + G  ++   ++R M     G+  D +T   VL+A   S+ 
Sbjct: 190 GTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSM--LRGGLVPDCYTLGSVLRA---SAE 244

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
           G  L+    +IH  + + GY     +   LI+ YA+ G +  A  +   M  K++ S +A
Sbjct: 245 GGGLII-ANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTA 303

Query: 259 MIACYARNGM-AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           +I  YA  G+ + +AL+LF+EM     ++  + V + S+L  CA LA+   G  IH + L
Sbjct: 304 LITGYAHEGIYSVDALDLFKEM--NQMNIGMDDVILCSMLNICANLASFALGTQIHAFAL 361

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           +      + + +AL+ MYA+ G++E  +  FD M++++V+SW SLIS Y  HGYG  A+ 
Sbjct: 362 KYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVS 421

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           ++K+M   G  P+ ++F+S+L ACSH GL  EG   F +M  ++ I+P  EHY+CMVDL 
Sbjct: 422 LYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLF 481

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            R   LEEA  ++  + I+    +WG++LG+  I+  + L + A+  LF ++P N+ NYV
Sbjct: 482 ARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYV 541

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSV 545
           +LA +Y+AA +WD+  ++++L+E R  +K  G S  +  +K    + V
Sbjct: 542 VLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQATKKSIPLLQV 589



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 204/434 (47%), Gaps = 16/434 (3%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLS-CTHHNSLSDALNVHSHLTDNGFDQD 114
           IQS C  G L +AL +LS  P     +  L +L  C    +      +H+HL  NGF  D
Sbjct: 5   IQSACNLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSD 64

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             L TKLI  Y     V  AR+VFD    R++  W A+    +  GR E+   L+  M  
Sbjct: 65  LHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMR- 123

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
              G+++++FTY   L+AC +  C    L  G ++   + +  +   + + + L+D +++
Sbjct: 124 -HCGVKANQFTYGSALRACTSLRC----LDMGIQVQGCIQKGRFVENLFVKSALVDFHSK 178

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G +  A ++F  M  ++VVSW+AMI  YA  G A ++  +FR M+     L P+  T+ 
Sbjct: 179 CGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGG--LVPDCYTLG 236

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           SVL+A A    L     IHG I + G  S   V   L+  YA+ G L   + +   M K+
Sbjct: 237 SVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKK 296

Query: 355 DVVSWNSLISSYGVHG-YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           D+ S  +LI+ Y   G Y   A+ +FKEM    +    +   S+L  C++      G  +
Sbjct: 297 DLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQI 356

Query: 414 FESMRKEHMIRPS--VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
                K    +PS  V     ++D+  ++ ++E+A +  +++  E     W SL+     
Sbjct: 357 HAFALK---YQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEME-EKNVISWTSLISGYAK 412

Query: 472 HCNVELAERASKRL 485
           H    +A    K++
Sbjct: 413 HGYGHMAVSLYKKM 426



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 226/453 (49%), Gaps = 33/453 (7%)

Query: 72   LSIEPNPTQHTYELLLLSCTHHNSLSD-ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
            L +EPN        L+ +C+    ++D    VH  +   G   D ++ T L++ Y     
Sbjct: 839  LGVEPNG--FMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGL 896

Query: 131  VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
            V +A+ +F++     +  W +L    + +G   EVL +Y+RM   G     + F      
Sbjct: 897  VYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTF------ 950

Query: 191  KACVASSCGFSLLKH---GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
             A V SSCG  LL+    G ++   ++++G+   V +  +LI M++ F  V  A +VF  
Sbjct: 951  -ATVTSSCG--LLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDH 1007

Query: 248  MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
            M   +++SW+AMI+ YA +G+  E+L  F  M    ++   NS T+ S+L  C+++  L+
Sbjct: 1008 MNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNE--TNSTTLSSLLSVCSSVDNLK 1065

Query: 308  QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
             G+ IHG +++ GLDS + + + L+T+Y+  G+ E  + VF  M +RD++SWNS+++ Y 
Sbjct: 1066 WGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYV 1125

Query: 368  VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK----MLFESMRKEHMI 423
              G     ++I  E++  G   + ++F S L ACS+   + E K    ++  +   + +I
Sbjct: 1126 QDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLI 1185

Query: 424  RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
              +      +V + G+   + EA K+++ +  +P    W +L+G    H   E    A K
Sbjct: 1186 VGNA-----LVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG---HAENEEPNEAVK 1236

Query: 484  RLFEL--EPTNAGNYVLLADVYAAADMWDEVKR 514
              ++L  E     NY+ +  V  A    D++ +
Sbjct: 1237 A-YKLIREKGIPANYITMVSVLGACSAPDDLLK 1268



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 116  FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
            F    LIN+YS F +++ AR+VFD+ R R    W+ +       G  EE + L+ +M   
Sbjct: 780  FQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQM--W 837

Query: 176  GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
            G G+  + F    ++ AC  S  G+ +   G ++H  V++ G  G V++ T L+  Y   
Sbjct: 838  GLGVEPNGFMVASLITAC--SRSGY-MADEGFQVHGFVVKTGILGDVYVGTALVHFYGSI 894

Query: 236  GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
            G V  A  +F +M   NVVSW++++  Y+ +G   E L +++ M  E   +  N  T  +
Sbjct: 895  GLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG--VSGNQNTFAT 952

Query: 296  VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
            V  +C  L     G  + G+I++ G +  + V ++L++M++    +E    VFDHM++ D
Sbjct: 953  VTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECD 1012

Query: 356  VVSWNSLISSYGVHGYGGKAIQIFKEM 382
            ++SWN++IS+Y  HG   ++++ F  M
Sbjct: 1013 IISWNAMISAYAHHGLCRESLRCFHWM 1039



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 133/252 (52%), Gaps = 8/252 (3%)

Query: 206  GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
            GK +HA  +    N  +    TLI+MY++FG + +A +VF +M  +N  SWS M++ Y R
Sbjct: 763  GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 266  NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL-EQGKMIHGYILRRGLDSI 324
             G+  EA+ LF +M      + PN   + S++ AC+    + ++G  +HG++++ G+   
Sbjct: 823  VGLYEEAVGLFCQMW--GLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGD 880

Query: 325  LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
            + V +ALV  Y   G +   Q +F+ M   +VVSW SL+  Y   G  G+ + +++ M  
Sbjct: 881  VYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQ 940

Query: 385  HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK--EHMIRPSVEHYACMVDLLGRANK 442
             GVS +  +F +V  +C   GL+E+  + ++ +    ++    SV     ++ +    + 
Sbjct: 941  EGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSS 997

Query: 443  LEEAAKIIEDLR 454
            +EEA  + + + 
Sbjct: 998  VEEACYVFDHMN 1009



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 7/182 (3%)

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
           C N+V     L+  + + +   GK +H + +   ++  +   + L+ MY++ G +E  + 
Sbjct: 743 CLNAVNFP--LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARY 800

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VFD M  R+  SW++++S Y   G   +A+ +F +M   GV P+     S++ ACS +G 
Sbjct: 801 VFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGY 860

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV--WGS 464
           + +          +  I   V     +V   G    +  A K+ E++   P   V  W S
Sbjct: 861 MADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEM---PDHNVVSWTS 917

Query: 465 LL 466
           L+
Sbjct: 918 LM 919



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 10/205 (4%)

Query: 60   CKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
            C +  L+   ++ ++  N  Q ++   L +  +   L +   +H  +   GF+ D  +  
Sbjct: 1332 CGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTN 1391

Query: 120  KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
              +++Y     + D   +  +   R+   WN L  A    G  ++  E +  M     G 
Sbjct: 1392 AAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEM--LKLGP 1449

Query: 180  RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG--YNGIVHIMTTLIDMYARFGC 237
            + D  T+  +L AC        L+  G   + S+ R    + GI H +  +ID+  R G 
Sbjct: 1450 KPDHVTFVSLLSACNHG----GLVDEGLAYYDSMTREFGVFPGIEHCV-CIIDLLGRSGR 1504

Query: 238  VMYA-GFVFSQMAVKNVVSWSAMIA 261
            + +A GF+       N ++W +++A
Sbjct: 1505 LSHAEGFIKEMPVPPNDLAWRSLLA 1529


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/593 (37%), Positives = 339/593 (57%), Gaps = 54/593 (9%)

Query: 115 PFLVTKLINVYS--HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           PF+ ++L+ +YS    + +  AR +FD+ +RR++  WN + +         + + L+  +
Sbjct: 48  PFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL 107

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                    D FT   V+K C        +++ GK+IH   L+ G+   V +  +L++MY
Sbjct: 108 VHE---YLPDNFTLPCVIKGCAR----LGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMY 160

Query: 233 ARFGCVMYAGFVFSQMAVK-----------NVVSWSAMIACYARNGMAFEALELFREM-- 279
           ++ G +  A  VF  M  K           N+VSW+AMI  Y ++G    ALELF +M  
Sbjct: 161 SKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPI 220

Query: 280 --------IMESHDLC-------------------PNSVTMVSVLQACAALAALEQGKMI 312
                   ++  ++L                    P+  T+VSVL A + LA L +G+ I
Sbjct: 221 WDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWI 280

Query: 313 HGYILRRG--LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370
           H Y+ + G  LD IL   ++L+ MYA+CG +E    VF  + K+ V  W ++I   G+HG
Sbjct: 281 HSYMEKNGFELDGILG--TSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHG 338

Query: 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430
               A+ +F EM   G+ P+ I F+ VL AC+HAGLV++G+  F+ M  E+ I P++EHY
Sbjct: 339 MANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHY 398

Query: 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490
            C+VD+L RA  LEEA   IE++ I P   +W SLLG  R H  +++ E A++R+ E+ P
Sbjct: 399 GCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAP 458

Query: 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550
              G Y+LL+++YAA+ MW++V  V+ ++  RG +K PG S +E K  ++ F+  D  HP
Sbjct: 459 ETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHP 518

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE-EKERIVLGHSEKLAVAFGLINTSK 609
           Q ++++A +  +  ++K  G+VP T  VL  ++ E EKE  +  HSE+LA+AFGLIN   
Sbjct: 519 QTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKP 578

Query: 610 GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           G  IRI KNLR+C DCHS TK +SK  ++EI+VRD  RFHHF+NG CSC DYW
Sbjct: 579 GIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 631



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 124/257 (48%), Gaps = 47/257 (18%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYA--RFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           +++HA  L+        + + L+ +Y+  +   + YA  +F ++  ++++ W+ +I CY 
Sbjct: 33  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 92

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
            N  + + + LF E++   H+  P++ T+  V++ CA L  +++GK IHG  L+ G  S 
Sbjct: 93  ENQFSHDGIVLFHELV---HEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSD 149

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL---------------------- 362
           + V  +LV MY++CG+++  + VFD M  +DVV WNSL                      
Sbjct: 150 VFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFD 209

Query: 363 --------------------ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
                               I+ Y ++G    A+++F  M+  G  PS  + VSVL A S
Sbjct: 210 SALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVS 269

Query: 403 HAGLVEEGKMLFESMRK 419
              ++ +G+ +   M K
Sbjct: 270 GLAVLGKGRWIHSYMEK 286



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 137/335 (40%), Gaps = 48/335 (14%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   ++  C     + +   +H      GF  D F+   L+N+YS    +D AR V
Sbjct: 113 PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKV 172

Query: 138 FDKTRRRTIYV-----------WNALFRALTLAGRGEEVLELYRRM-------------- 172
           FD    + + +           WNA+      +G  +  LEL+ +M              
Sbjct: 173 FDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAG 232

Query: 173 ---NGT------------GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
              NG               G R    T   VL A      G ++L  G+ IH+ + ++G
Sbjct: 233 YELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAV----SGLAVLGKGRWIHSYMEKNG 288

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
           +     + T+LI+MYA+ GC+  A  VF  +  K V  W+A+I     +GMA  AL LF 
Sbjct: 289 FELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFL 348

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYA 336
           EM      L PN++  + VL AC     ++ G+     ++    ++  L     LV +  
Sbjct: 349 EMCKTG--LKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILC 406

Query: 337 RCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
           R G LE  +   ++M    + V W SL+     HG
Sbjct: 407 RAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHG 441



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           +L +   P+  T   +L + +    L     +HS++  NGF+ D  L T LI +Y+    
Sbjct: 249 MLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGC 308

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           ++ A  VF   +++ +  W A+   L + G     L L+  M    TG++ +   +  VL
Sbjct: 309 IESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEM--CKTGLKPNAIIFIGVL 366

Query: 191 KAC 193
            AC
Sbjct: 367 NAC 369


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/517 (39%), Positives = 316/517 (61%), Gaps = 14/517 (2%)

Query: 148 VWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGK 207
           +WN + R  + +    E + LY  M   G     + FT+ ++L +C       S L+ G 
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKGIA-PPNNFTFPFLLNSCAR----LSSLEPGH 55

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
           E+H+ +++HG+   + +   LI +Y+ FG +  A  +F +  V+++VS++ MI  YA   
Sbjct: 56  EVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVN 115

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK-MIHGYILRRGLDSILP 326
               AL LF EM  ++ D     VT+V+VL ACA L A + GK + H YI     +    
Sbjct: 116 QPESALCLFGEM--QNSD----EVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTI 169

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           + +A++ MYA+CG ++    +F  + K  +    +NS+I+    HG G  AI +F+E+I 
Sbjct: 170 LTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELIS 229

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            G+ P  ++FV VL AC H+GL+EEGK LFESM   + I+P +EHY CMVDLLGR   LE
Sbjct: 230 TGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLE 289

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504
           EA  +++ +  E    +W +LL +CR H NV++ E A ++L E+E  +   YVLL+++ A
Sbjct: 290 EAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILA 349

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
            A+ W+E ++V++++E  G++K PG S IE+   ++ FV+ D+ HPQ +++  +L +++ 
Sbjct: 350 DANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAM 409

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
            +K  GYVP T  V++D+D EEKE +V  HSEKLA+AFGL+  S  +TIRI KNLR+C D
Sbjct: 410 RLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICAD 469

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
           CH   K +S+   +EI VRD  RFHHFRNG CSC D+
Sbjct: 470 CHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 191/422 (45%), Gaps = 66/422 (15%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I+   +  N R+A+ +        I P P   T+  LL SC   +SL     VHSH+
Sbjct: 3   NTMIRGYSRSDNPREAIVLYMSMIAKGIAP-PNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             +GF+ D F+   LI++YS F +++ AR +FD++  R +  +N + +      + E  L
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG-YNGIVHIM 225
            L+  M        SD  T   VL AC A    F L   GK ++   + +G +N    + 
Sbjct: 122 CLFGEMQ------NSDEVTLVAVLSAC-ARLGAFDL---GKRLYHQYIENGVFNQNTILT 171

Query: 226 TTLIDMYARFGCVMYAGFVFSQMA--VKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
             ++DMYA+ G +  A  +F ++   +K    +++MIA  A++G+   A+ +FRE+I  S
Sbjct: 172 AAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELI--S 229

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLE 342
             L P+ VT V VL AC     +E+GK +   +    G+   +     +V +  R G LE
Sbjct: 230 TGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLE 289

Query: 343 LGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
               +   M  + + V W +L+S+   HG                V    I+        
Sbjct: 290 EAYDLVQKMPFEANSVIWRALLSACRTHG---------------NVKIGEIA-------- 326

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA---AKIIED--LRIE 456
                   G+ L E M  +H  R     Y  + ++L  AN+ EEA    K++ED  +R  
Sbjct: 327 --------GQKLLE-MEAQHGAR-----YVLLSNILADANQWEEARQVRKVMEDHGIRKP 372

Query: 457 PG 458
           PG
Sbjct: 373 PG 374


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/615 (35%), Positives = 350/615 (56%), Gaps = 14/615 (2%)

Query: 55  LIQSLCKQGNLRQALDV-----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDN 109
           +I  L + G   +A+D+     +S    P + T   L+  C     LS    +HS +  +
Sbjct: 232 MITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRS 291

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG--EEVLE 167
           G   D  +   L+++Y+    V +AR VFD  R   +  W AL       G G   E + 
Sbjct: 292 GLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMR 351

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           ++  M   G G+  + FT++ VLKAC AS   F     G+++H   ++ G + I  +   
Sbjct: 352 MFSNMLLQG-GVAPNCFTFSGVLKAC-ASLPDFDF---GEQVHGQTIKLGLSAIDCVGNG 406

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           L+ +YA+ G +  A   F  +  KN+VS + +     ++       +L RE+  E     
Sbjct: 407 LVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREV--EYVGSG 464

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
            +S T  S+L   A +  + +G+ IH  +++ G  + L V +AL++MY++CG  E    V
Sbjct: 465 VSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQV 524

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F+ M+  +V++W S+I+ +  HG+  KA+++F  M+  GV P+ +++++VL ACSH GL+
Sbjct: 525 FNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLI 584

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           +E    F SMR  H I P +EHYACMVDLLGR+  L EA + I  +  +    VW + LG
Sbjct: 585 DEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLG 644

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           SCR+H N +L E A+K + E EP +   Y+LL+++YA    W++V  +++ ++ + + K 
Sbjct: 645 SCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKE 704

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
            G S IEV+ +++ F   D  HP+ +Q++  L  L+ ++K  GYVP T  VL+D++ E+K
Sbjct: 705 AGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQK 764

Query: 588 ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
           E+ +  HSEKLAVAF LI+T   + IR+ KNLR+C DCH+  K+IS  + +EI+VRD NR
Sbjct: 765 EQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANR 824

Query: 648 FHHFRNGVCSCGDYW 662
           FHH ++G CSC DYW
Sbjct: 825 FHHMKDGTCSCNDYW 839



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 181/353 (51%), Gaps = 22/353 (6%)

Query: 65  LRQALDVLSIEPNPTQH-----TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
           L +A+  L++    + H     T  LLL  C    +      +H  LT +    D  L+ 
Sbjct: 32  LHKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLN 91

Query: 120 KLINVYSHFDSVDDARHVFD--KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177
            LI +YS  +    A  +F   +  +R +  ++++           + +E++ ++     
Sbjct: 92  SLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQL-LLQD 150

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFG 236
           G+  + + +T V++AC+    GF   K G  +   VL+ GY +  V +   LIDM+ + G
Sbjct: 151 GVYPNEYCFTAVIRACLKG--GF--FKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVK-G 205

Query: 237 CVMY----AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           C +     A  VF +M  KNVV+W+ MI   A+ G   EA++LF EM++ S    P+  T
Sbjct: 206 CSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSS-GYVPDRFT 264

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           +  ++  CA +  L  GK +H +++R GL   L V  +LV MYA+CG ++  + VFD M 
Sbjct: 265 LTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMR 324

Query: 353 KRDVVSWNSLISSY--GVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACS 402
           + +V+SW +L++ Y  G  GY  +A+++F  M+   GV+P+  +F  VL AC+
Sbjct: 325 EHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/616 (34%), Positives = 346/616 (56%), Gaps = 14/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS--IEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHL 106
           N ++     +G++    D+L   +  +      E+ +L+    C   + L     +H + 
Sbjct: 346 NTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYS 405

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
               F  D  L    +  Y+   S+  A+ VF   R +T+  WNAL      A   +  L
Sbjct: 406 LKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGY--AQSSDPRL 463

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            L   +    +G+  D FT   +L AC         L+ GKE+H  ++R+     + +  
Sbjct: 464 SLDAHLQMKNSGLLPDNFTVCSLLSACSK----LKSLRLGKEVHGFIIRNWLERDLFVYL 519

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +++ +Y   G +     +F  M   ++VSW+ +I  + +NG    AL LFR+M++  + +
Sbjct: 520 SVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVL--YGI 577

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P  ++M++V  AC+ L +L  G+  H Y L+  L+    +  +++ MYA+ G +     
Sbjct: 578 QPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSK 637

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF+ + ++   SWN++I  YG+HG   +AI++F+EM   G +P  ++F+ VL AC+H+GL
Sbjct: 638 VFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGL 697

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           + EG    + M+    ++P+++HYAC++D+LGRA +L+ A ++  ++  EP   +W SLL
Sbjct: 698 LHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLL 757

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
             CRIH N+E+ E+ + +LF LEP    NYVLL+++YA    WD+V++V++ ++   L+K
Sbjct: 758 SWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRK 817

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S IE+  K++SFV  + F   FE++ +L   L  ++ + GY P T  V +DL  EE
Sbjct: 818 DAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDLSEEE 877

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           K   + GHSEKLA+ +GLI TS+G T+R+ KNLR+C DCH+  K ISK   +EI+VRD  
Sbjct: 878 KIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNK 937

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF  G CSCGDYW
Sbjct: 938 RFHHFNKGFCSCGDYW 953



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 129/566 (22%), Positives = 242/566 (42%), Gaps = 50/566 (8%)

Query: 41  STTPTSLSSRNKNEL---IQSLCKQGNLRQALDVLSIEPNPTQHTYE----------LLL 87
           ++   S +S N N     I + C+ G+L ++  V+       + + +          LLL
Sbjct: 32  NSNAISSNSTNANHFLRRISNFCETGDLDKSFRVVQEFAGDDESSSDVFLLVREALGLLL 91

Query: 88  LSCTHHNSLSDALNVHSHLTDNG--FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
            +      +     +H HL         D  L T++I +Y+   S DD+R  FD  R + 
Sbjct: 92  QASGKRKDIEMGRKIH-HLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKN 150

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           ++ WNA+  + +      EVLE++ +M  + T +  D FT+  V+KAC     G S +  
Sbjct: 151 LFQWNAVISSYSRNELYHEVLEMFIKMI-SKTHLLPDNFTFPCVIKACA----GISDVGI 205

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           G  +H  V++ G    + +   L+  Y   G V  A  +F  M  +N+VSW++MI  ++ 
Sbjct: 206 GLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSD 265

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           NG              +     P+  T+V+VL  CA    +  GK +HG+ ++  LD  L
Sbjct: 266 NG--------------DDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKEL 311

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY- 384
            V +AL+ MY++ G +   Q +F   + ++VVSWN+++  +   G       + ++M+  
Sbjct: 312 VVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAG 371

Query: 385 -HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
              V    ++ ++ +  C    ++   K L     K+  +   +   A  V    +   L
Sbjct: 372 SEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANA-FVASYAKCGSL 430

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
             A ++   +R +     W +L+G      +  L+  A      L+  N+G   LL D +
Sbjct: 431 SYAQRVFHGIRSKT-LNSWNALIGGYAQSSDPRLSLDA-----HLQMKNSG---LLPDNF 481

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
               +     ++K L   + +     R+ +E  R ++ ++SV   +    +L  + +   
Sbjct: 482 TVCSLLSACSKLKSLRLGKEVHGFIIRNWLE--RDLFVYLSVLSLYIHCGELCTVQVLFD 539

Query: 564 AEMKEKGYVPQTKVVLYDLDAEEKER 589
           A M++   V    V+   L     ER
Sbjct: 540 A-MEDNSLVSWNTVITGHLQNGFPER 564


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/487 (38%), Positives = 306/487 (62%), Gaps = 15/487 (3%)

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
           ++FT+ ++LKAC A      +   G + HA+ L+ G+    ++  TLI MY+ FG     
Sbjct: 125 NKFTFPFLLKACAALPGSPDV---GLQAHAAALKFGFATDQYVSNTLIHMYSCFG----G 177

Query: 242 GF------VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           GF      VF +M  ++ V+WSAMI  Y R G++ +A+ELFREM  +++ +  + VT++ 
Sbjct: 178 GFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREM--QANGVQADEVTVIG 235

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           VL A   L ALE  + +  ++ R G+   + + +AL+   A+CG ++    VF+ M +R 
Sbjct: 236 VLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRS 295

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           VVSW S+I +  + G G +A+++F+EM   GV P  ++F+ VL ACSHAG+V+EG   F+
Sbjct: 296 VVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFD 355

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
           +M+ E+ I P +EHY CMVD+ GRA  +E A + +  + I+P P +W SL+ +CR H  +
Sbjct: 356 AMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRL 415

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           EL E  ++ L    P +  NY++L++V+A    W E   ++R +  RG++KVPG S +E+
Sbjct: 416 ELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVEL 475

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
             +++ F++ DE HPQ++ ++ ++  ++ E++  G++  T  VL DLD E+KE  +  HS
Sbjct: 476 DGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHS 535

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EKLA+AF L+ T  G  +R+ KNLR+C DCH+  K IS+   +EI+VRD +RFH F++G 
Sbjct: 536 EKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGS 595

Query: 656 CSCGDYW 662
           CSC D+W
Sbjct: 596 CSCKDFW 602



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 137/298 (45%), Gaps = 13/298 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSD-ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS--VDDA 134
           P + T+  LL +C       D  L  H+     GF  D ++   LI++YS F    + DA
Sbjct: 124 PNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDA 183

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R+VFD+  + +   W+A+       G   + +EL+R M     G+++D  T   VL    
Sbjct: 184 RNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQ--ANGVQADEVTVIGVL---- 237

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
           A++     L+  + +   V R G    V +   LID  A+ G V  A  VF  M  ++VV
Sbjct: 238 AAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVV 297

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIH 313
           SW+++I   A  G   EA+ +F EM +    + P+ V  + VL AC+    +++G     
Sbjct: 298 SWTSVIDALAMEGRGKEAVRVFEEMKVAG--VPPDDVAFIGVLTACSHAGMVDEGCGYFD 355

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
              +  G++  +     +V M+ R G +E        M  + + V W SL+S+   HG
Sbjct: 356 AMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHG 413


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/613 (34%), Positives = 354/613 (57%), Gaps = 41/613 (6%)

Query: 55  LIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           ++    +    ++AL + S    +   P   T+  +  +C    +     +VH     + 
Sbjct: 211 MVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSR 270

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           ++ D ++   L+++Y+    +DDAR  F++  ++ +  W+ +      + + +E +E++ 
Sbjct: 271 YELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFF 330

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           +M      +  ++FT+  VL+AC A+  G +L   G +IH  V++ G +  V +   L+D
Sbjct: 331 QMRQAL--VLPNQFTFASVLQAC-ATMEGLNL---GNQIHCHVIKIGLHSDVFVSNALMD 384

Query: 231 MYARFGCVMYAGFVFSQMAVKN-VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
           +YA+ G +  +  +F++   +N V  W+ +I  + + G   +AL LF  M+   + +   
Sbjct: 385 VYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNML--EYRVQAT 442

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
            VT  S L+ACA+LAALE G  IH   ++   D  + V +AL+ MYA+CG ++  + VFD
Sbjct: 443 EVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFD 502

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
            M+K+D VSWN++IS Y +HG                             AC++AGL+++
Sbjct: 503 LMNKQDEVSWNAMISGYSMHGL----------------------------ACANAGLLDQ 534

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           G+  F SM ++H I P +EHY CMV LLGR   L++A K+I+++  +P   VW +LLG+C
Sbjct: 535 GQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGAC 594

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
            IH ++EL   +++ + E+EP +   +VLL+++YA A  WD V  V++ ++ +G++K PG
Sbjct: 595 VIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPG 654

Query: 530 RSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKER 589
            S IE +  ++SF   D  HP+   ++ +L  L  + K+ GY+P   VVL D++ EEKER
Sbjct: 655 LSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKER 714

Query: 590 IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
           ++  HSE+LA++FG+I T  G  IRI KNLR+C DCH+  K ISK   +EI+VRD+NRFH
Sbjct: 715 LLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFH 774

Query: 650 HFRNGVCSCGDYW 662
           HF+ G+CSCGDYW
Sbjct: 775 HFQEGLCSCGDYW 787



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 8/322 (2%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           H Y   L  C   +  S    +H  +   G   D F    L+N+Y   D + DA  +FD+
Sbjct: 39  HAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDE 98

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
              R    +  L +    + R  E +EL+ R++  G  +  + F +T +LK  V+  CG 
Sbjct: 99  MPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHEL--NPFVFTTILKLLVSMDCG- 155

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
              + G  IHA + + G+     + T LID Y+  G V  A  VF  +  K++VSW+ M+
Sbjct: 156 ---ELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMV 212

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
            C+A N    EAL+LF +M M      PN+ T  SV +AC  L A + GK +HG  L+  
Sbjct: 213 TCFAENDCFKEALKLFSQMRMVGFK--PNNFTFASVFKACLGLEAFDVGKSVHGCALKSR 270

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
            +  L V  AL+ +Y + G ++  +  F+ + K+DV+ W+ +I+ Y       +A+++F 
Sbjct: 271 YELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFF 330

Query: 381 EMIYHGVSPSPISFVSVLGACS 402
           +M    V P+  +F SVL AC+
Sbjct: 331 QMRQALVLPNQFTFASVLQACA 352



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 127/250 (50%), Gaps = 7/250 (2%)

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK +H  +L+ G    +     L++MY +   +  A  +F +M  +N +S+  +I  YA 
Sbjct: 57  GKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAE 116

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           +    EA+ELF  +  E H+L P   T  ++L+   ++   E G  IH  I + G +S  
Sbjct: 117 SVRFLEAIELFVRLHREGHELNPFVFT--TILKLLVSMDCGELGWGIHACIFKLGHESNA 174

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +AL+  Y+ CG++++ + VFD +  +D+VSW  +++ +  +    +A+++F +M   
Sbjct: 175 FVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMV 234

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY--ACMVDLLGRANKL 443
           G  P+  +F SV  AC      + GK +     K    R  ++ Y    ++DL  ++  +
Sbjct: 235 GFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKS---RYELDLYVGVALLDLYTKSGDI 291

Query: 444 EEAAKIIEDL 453
           ++A    E++
Sbjct: 292 DDARXAFEEI 301



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 64/136 (47%)

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           ++R G + ++ +L +E +        NS    + LQ C       +GK +H  IL+RG  
Sbjct: 11  FSRRGFSVQSAKLTQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGC 70

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             L   + L+ MY +   L     +FD M +R+ +S+ +LI  Y       +AI++F  +
Sbjct: 71  LDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL 130

Query: 383 IYHGVSPSPISFVSVL 398
              G   +P  F ++L
Sbjct: 131 HREGHELNPFVFTTIL 146


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/569 (37%), Positives = 339/569 (59%), Gaps = 13/569 (2%)

Query: 96  LSDALNVHSHLTDNGFDQDPF-LVTKLIN-VYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
           +++   +H ++  +    DP  L T L++ V +  +S+  AR+VF +        +N + 
Sbjct: 1   MNNVYRLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTII 60

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           R+ +   R      L+   +    GI  D FT+ +VLKAC       S L+    +H+ +
Sbjct: 61  RSHS---RFFPSHSLFYFFSMRSNGIPLDNFTFPFVLKAC-------SRLQINLHLHSLI 110

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           +++G +  + +   LI +Y   G +  A  VF +M+ ++ VSWS +IA +  NG A EAL
Sbjct: 111 VKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEAL 170

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
           +LF +M +E   + P+ VTM+SV+ A + L  LE G+ +  +I R GL   + + +AL+ 
Sbjct: 171 DLFEKMQLED-KVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALID 229

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           M++RCG ++    VF+ M  R+V++W +LI+  GVHG   +A+ +F  M   GV P  ++
Sbjct: 230 MFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVT 289

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           F  VL ACSH GLV+EG  +FES+RK + + P ++HY CMVD+LGRA  L EA   +E +
Sbjct: 290 FSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERM 349

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
            ++P   +W +LLG+C  H N+ LAE+   ++ ++  +  G+ VLL++VY AA  W E  
Sbjct: 350 PMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKA 409

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
            ++  +  + + K PG S I V + ++ FVS D  HPQ E +   L ++  +++ +GY+ 
Sbjct: 410 SIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMM 469

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
           QTK VL+D++ EE+E  +  HSEKLAVAF +++     TIRI KNLR+C DCHSF K IS
Sbjct: 470 QTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHIS 529

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
               ++I++RD NRFHHF  G+CSC DYW
Sbjct: 530 VRFERKIIIRDRNRFHHFEKGLCSCHDYW 558



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 46/251 (18%)

Query: 55  LIQSLCKQGNLRQALDV-----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDN 109
           +I S    G   +ALD+     L  +  P + T   ++ + +H   L     V + +   
Sbjct: 156 VIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRL 215

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           G      L T LI+++S   S+D++  VF+K   R +  W AL   L + GR  E L ++
Sbjct: 216 GLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMF 275

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
             M    +G++ D  T++ VL AC        L+K G +I  S+ +      V+ M  L+
Sbjct: 276 HSMR--KSGVQPDYVTFSGVLVACSHG----GLVKEGWDIFESIRK------VYRMDPLL 323

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
           D Y   GC                     M+    R G+  EA +    M M+     PN
Sbjct: 324 DHY---GC---------------------MVDILGRAGLLNEAYDFVERMPMK-----PN 354

Query: 290 SVTMVSVLQAC 300
           S+   ++L AC
Sbjct: 355 SIIWRTLLGAC 365


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/591 (35%), Positives = 337/591 (57%), Gaps = 35/591 (5%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH+ L   G    P     L++ Y+    + DAR  FD   RR +++++AL  A++ +  
Sbjct: 23  VHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSD 82

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            E VL L RRM  +   +R D F    VL +  +++     L+ G+++HA      Y+  
Sbjct: 83  PELVLPLLRRML-SDDALRPDHF----VLASLASAAGRLRSLRLGRQLHAHFAASPYSAD 137

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI- 280
             + ++LIDMY + G    A  VF  + VKN V W+A+I+ YA NG   EAL+LF+ M  
Sbjct: 138 NVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPA 197

Query: 281 ----------------------------MESHDL-CPNSVTMVSVLQACAALAALEQGKM 311
                                       M   D+   ++  + +V+   A LAAL  G+ 
Sbjct: 198 HGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQ 257

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           +HG+++R G  S + V +ALV MY++C  +   + VF+ +  RDV+SW +++     HG 
Sbjct: 258 LHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGR 317

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             +   ++  M+  G+ P+ ++FV ++ ACSHAGLV++G+ LF+SM++E+ ++P V+HY 
Sbjct: 318 AEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYT 377

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           C +DLL R+  L EA K+I  +  EP    WG+LL +C+ H + ++  R +  L EL P 
Sbjct: 378 CYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPK 437

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ 551
           +   Y+LL++VYA    WD V +V++++    ++KVPG S +E  R+   F + +     
Sbjct: 438 DPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDV 497

Query: 552 FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE 611
            E++   L  L +EM+++GYVP T  V++DL+  EKE+ +  HSE+LAVAFG++ +  G 
Sbjct: 498 GEEITCFLEELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGS 557

Query: 612 TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            IR+ KNLR+C DCH+  KFIS  A ++I+VRD +RFHHF +G CSC ++W
Sbjct: 558 VIRVVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 136/303 (44%), Gaps = 30/303 (9%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           SL     +H+H   + +  D  + + LI++Y       DAR VFD    +   VW AL  
Sbjct: 118 SLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALIS 177

Query: 155 ALTLAGRGEEVLELYRRMNGTG-----------------TG-------IRSD--RFTYTY 188
                G   E L+L++ M   G                 TG       +R D  R    +
Sbjct: 178 GYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAF 237

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           VL   +  +   + L  G+++H  V+R G+   + +   L+DMY++   +  A  VF  +
Sbjct: 238 VLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGI 297

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
            V++V+SW+ ++   A++G A E   L+  M++    + PN VT V ++ AC+    +++
Sbjct: 298 TVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAG--MKPNEVTFVGLIYACSHAGLVQK 355

Query: 309 GKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSY 366
           G+ +   + R  G+   +   +  + + +R G L   + +   M  + D  +W +L+S+ 
Sbjct: 356 GRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSAC 415

Query: 367 GVH 369
             H
Sbjct: 416 KKH 418



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 5/216 (2%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           + +HA +L+ G   +      L+  YAR   +  A   F     +++  +SA++A  + +
Sbjct: 21  RRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHS 80

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
                 L L R M+ +   L P+   + S+  A   L +L  G+ +H +       +   
Sbjct: 81  SDPELVLPLLRRMLSDDA-LRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNV 139

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           V S+L+ MY +CG  +  + VFD +  ++ V W +LIS Y  +G  G+A+ +F+ M  HG
Sbjct: 140 VKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHG 199

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           +     ++ +++     AG       LF  MR++ +
Sbjct: 200 L----FTWTALISGFVKAGNYTGAMGLFVEMRRDDI 231


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/638 (35%), Positives = 351/638 (55%), Gaps = 19/638 (2%)

Query: 34  CCVSLNS---STTPTSLSSRNKNELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELL 86
           CC+ + S   S  PT   S + N +I    K G   +AL +     +++  P+  T+  +
Sbjct: 192 CCLDIASQLFSEMPTK-DSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAM 250

Query: 87  LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI 146
           L        +     +H       +  D F+   L++ YS  D +D A+++FD+      
Sbjct: 251 LGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDG 310

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL-LKH 205
             +N +       G+ E+  +L++R+ GT      DR  + +   A + S     L L  
Sbjct: 311 VSYNIIITGYAWNGQYEKSFDLFKRLQGTSF----DRKNFPF---ATMLSVAAIELNLSM 363

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           G++ HA  +       V +   L+DMYA+      A  +F+ +A +N V W+A+I+ Y +
Sbjct: 364 GRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQ 423

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G   EAL++F+EM  E  ++  +  T  S L+A A LA++  GK +H  ++R GL S +
Sbjct: 424 KGFHEEALKMFKEMNRE--NVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSV 481

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
              S LV MYA CG ++    VF  M  R++V WN+LIS+Y  +G        F +MI  
Sbjct: 482 FSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIES 541

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+ P  +SF+SVL ACSH GLVE+    F SM + + + P  +HYA M+D+L R+ +  E
Sbjct: 542 GLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNE 601

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP-TNAGNYVLLADVYA 504
           A  +I ++  EP   +W S+L SCRIH N +LA++A+ +LF+++   +A  YV ++++YA
Sbjct: 602 AENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYA 661

Query: 505 AADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSA 564
            A  W+   +VK+ +  RG++KV   S +E+  +++ F + D  HPQ EQ+   + +L  
Sbjct: 662 EAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVE 721

Query: 565 EMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
            M ++GY P T   L ++D E K   +  HSE+LA+AF LINT +G  I I KNLR C D
Sbjct: 722 LMDKEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVD 781

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH+  K ISK   +EI VRD +RFHHFR+G CSCGDYW
Sbjct: 782 CHAAIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 180/393 (45%), Gaps = 14/393 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+  LL       +L + L +HSH+   GF     +   L++ Y     +D A  +
Sbjct: 141 PDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQL 200

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F +   +    +N +    T  G  EE L+L+ +M       +   FT+     A +  S
Sbjct: 201 FSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMR--NMDFQPSGFTFA----AMLGMS 254

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
            G   +  G++IH   ++  Y   + +   L+D Y++   +  A  +F +M   + VS++
Sbjct: 255 VGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYN 314

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            +I  YA NG   ++ +LF+ +   S D    +    ++L   A    L  G+  H   +
Sbjct: 315 IIITGYAWNGQYEKSFDLFKRLQGTSFD--RKNFPFATMLSVAAIELNLSMGRQTHAQAV 372

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
                S + V +ALV MYA+C K E    +F ++  R+ V W ++IS Y   G+  +A++
Sbjct: 373 VTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALK 432

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +FKEM    V     +F S L A ++   V  GK L  S+ +  ++  SV   + +VD+ 
Sbjct: 433 MFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLL-SSVFSGSVLVDMY 491

Query: 438 GRANKLEEAAKIIEDLRIEPGPKV--WGSLLGS 468
                +++A ++ +++   P   +  W +L+ +
Sbjct: 492 ANCGSMKDAIEVFKEM---PDRNIVCWNALISA 521



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 163/353 (46%), Gaps = 25/353 (7%)

Query: 111 FDQDPFLVTKLINV----YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           FD+ P+  T  +N+    Y    ++  AR +F+    R    W  +    +   + +E  
Sbjct: 69  FDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAF 128

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF---SLLKHGKEIHASVLRHGYNGIVH 223
            LY  M    +G++ D  T+  +L        GF   + LK   +IH+ ++R G++  + 
Sbjct: 129 NLYTEM--CRSGVKPDHITFATLLS-------GFDDTTTLKEVLQIHSHIIRFGFSASLI 179

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           +  +L+D Y +  C+  A  +FS+M  K+ VS++ MI  Y + G   EAL+LF  M M +
Sbjct: 180 VFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLF--MQMRN 237

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
            D  P+  T  ++L        +  G+ IHG  ++      + V +AL+  Y++   ++L
Sbjct: 238 MDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDL 297

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
            + +FD M + D VS+N +I+ Y  +G   K+  +FK +           F ++L   + 
Sbjct: 298 AKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAA- 356

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYA---CMVDLLGRANKLEEAAKIIEDL 453
              +E    +      + ++  +V        +VD+  +  K E+A +I  +L
Sbjct: 357 ---IELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANL 406


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/618 (35%), Positives = 342/618 (55%), Gaps = 52/618 (8%)

Query: 84  ELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLI-NVYSHFDSVDDARHVFDKTR 142
           + LL SC    S      VH+ L   G    P    KL+  + S F  +  A  VFD   
Sbjct: 5   DFLLSSC---KSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFP 61

Query: 143 RRTIYVWNALFRALTLAGRGE-EVLELYRRMNGTGTGIRSDR-----FTYTYVLKACVAS 196
           +  ++++N + + L  +     +    +R +      IR +R     +++ +  K C   
Sbjct: 62  QPDLFLYNTIIKVLAFSTTSSADSFTKFRSL------IREERLVPNQYSFAFAFKGC--- 112

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
             G  +L+ G+++    ++ G    + +   LI MY     V+ A  VF     +++ SW
Sbjct: 113 GSGVGVLE-GEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSW 171

Query: 257 SAMIACYARNGMAFEALELFREM--------------------IMESHD---------LC 287
           + M++ YAR G   EA +LF EM                     ME+ D         + 
Sbjct: 172 NIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMS 231

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           PN  T+ S L ACA L AL+QG+ +H YI +  +     +++ L+ MYA+CG+LE    +
Sbjct: 232 PNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKL 291

Query: 348 FDHMD--KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
           F+     KR V  WN++I  + VHG   +AI++F++M    VSP+ ++FV++L ACSH  
Sbjct: 292 FNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGN 351

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
            VEEG+  FESM   + ++P +EHY C+VDLLGRA +L+EA +II  + + P   +WG+L
Sbjct: 352 RVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGAL 411

Query: 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
           L +C+IH + E+ ER  K + EL+P + G +VLLA++Y+    W+E + ++  +   G +
Sbjct: 412 LSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKK 471

Query: 526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL-DA 584
           K PG S IE+    + F+  D  HPQ +QL+  L  +  ++K  GY+P++  VL D+ D 
Sbjct: 472 KTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDN 531

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           E++E  +L HSEKLA+AFGL+NT+    IRI KNLR+C DCH   KFISK  ++EI+VRD
Sbjct: 532 EDRETALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRD 591

Query: 645 VNRFHHFRNGVCSCGDYW 662
             R+HHF++G CSC DYW
Sbjct: 592 RIRYHHFKDGTCSCNDYW 609



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 149/345 (43%), Gaps = 50/345 (14%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P Q+++      C     + +   V  H    G + + F+   LI +Y + D V DAR V
Sbjct: 100 PNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKV 159

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM------------------------- 172
           FD +  R +Y WN +       G+ +E  +L+  M                         
Sbjct: 160 FDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEAL 219

Query: 173 ----NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
               N    G+  + +T    L AC         L  G+ +H  + ++       ++  L
Sbjct: 220 DIFHNMLAKGMSPNEYTLASSLAACA----NLVALDQGRWMHVYIKKNNIQMNERLLAGL 275

Query: 229 IDMYARFGCVMYAGFVFSQMA--VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           IDMYA+ G + +A  +F+      + V  W+AMI  +A +G + EA+E+F +M +E   +
Sbjct: 276 IDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEK--V 333

Query: 287 CPNSVTMVSVLQACAALAALEQGK-----MIHGYILRRGLDSILPVVSALVTMYARCGKL 341
            PN VT V++L AC+    +E+G+     M   Y ++  L+        LV +  R G+L
Sbjct: 334 SPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEH----YGCLVDLLGRAGRL 389

Query: 342 ELGQCVFDHMD-KRDVVSWNSLISSYGVHG---YGGKAIQIFKEM 382
           +  + +   M    DV  W +L+S+  +H     G +  +I KE+
Sbjct: 390 KEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKEL 434


>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
 gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
          Length = 640

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/630 (36%), Positives = 355/630 (56%), Gaps = 36/630 (5%)

Query: 56  IQSLCKQGNLRQALDVLS-IEPNPTQHTYELL--LLSCTHHNSLSDALNVHSHLTDNGF- 111
           +++L + G  R++L +L   +P+P  H   L   ++SC   +  S    +H+     G  
Sbjct: 24  VRTLTRLGRHRESLALLRHGDPSPPPHALALPASVISCAALSLPSGVAQIHALAAKRGLL 83

Query: 112 -DQDPFLVTKLINVYSHFDSVDDARHVFDK--------TRRRTIYVWNALFRALTLAGRG 162
              D +L++ L+  YS    +  A  + D+        T  RT +  N++     L    
Sbjct: 84  PAADAYLLSALLTSYSRLGCLPLAHQLLDEMPLESTPHTTLRTAF--NSVISGCALHALP 141

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
                L+RRM     G   D  T   ++ A   S           ++HA   R G     
Sbjct: 142 VASFALFRRMRAAAVGF--DAVTLLALVPATPLSVV--------PQVHALAARVGLATET 191

Query: 223 HIMTTLIDMYAR---FGCVMYAGFVFSQM--AVKNVVSWSAMIACYARNGMAFEALELFR 277
            +   L+  YAR   FG  + A  VF +M  A +++VSW+A+++ +A+NG+A +ALEL+R
Sbjct: 192 SVANCLMSTYARGGAFGAAL-ARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALELYR 250

Query: 278 EM-IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTM 334
            M   E   + P++VT+V VL + A L A   G  +  Y+ +R  G  + + + +AL+  
Sbjct: 251 RMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDVEHYVRQRIPGFHTNVQLCNALINF 310

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           +ARCG L   Q +FD M ++ +VSW +LI+ +G+HG G  A+ +F+ M+  G+ P  ++ 
Sbjct: 311 HARCGSLPRAQQLFDEMPRKSIVSWTALITGHGMHGNGDVAVSLFERMVSEGIRPDNVAM 370

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           V++  ACSHAGL +EG+  F +M   + +RP++EHY CMVDLLGRA +LEEA ++I  + 
Sbjct: 371 VALFSACSHAGLYDEGRRYFSAMESVYKLRPTLEHYTCMVDLLGRAGRLEEARELISSMP 430

Query: 455 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514
           +     VWG+LLG+C+IH NV++ E A  R+ ELEP N G YVL++++Y      D V R
Sbjct: 431 MPADGAVWGALLGACKIHKNVDVGEEAFTRVIELEPKNVGYYVLMSNIYTDTGQLDCVAR 490

Query: 515 VKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQ 574
           V+ ++  RGL+K PG S +E K +++ F++ D  HPQ  +++ L+I L   +KEK  + +
Sbjct: 491 VRAMMRERGLKKEPGCSYVEHKGRVHLFMADDHSHPQARRIYELVIRLELMVKEKSGMRE 550

Query: 575 TKVVLYD--LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
           ++V      ++    + +V  HSEKLAVAFGL+NT  G  I + KNLR+C DCHSF K +
Sbjct: 551 SEVAAAKGRMEKAAAQPLVGIHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKVV 610

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           S   N+  LVRD +RFH F  GVCSC DYW
Sbjct: 611 SATTNRAFLVRDASRFHRFDGGVCSCKDYW 640


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/586 (37%), Positives = 330/586 (56%), Gaps = 9/586 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           PTQ  +   + +C    S+     +H      G   + F+ + L ++YS   ++ DA  V
Sbjct: 104 PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKV 163

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++   +    W A+    +  G  EE L  +++M      I  D+      L AC A  
Sbjct: 164 FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTI--DQHVLCSTLGACGA-- 219

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS-QMAVKNVVSW 256
                 K G+ +H+SV++ G+   + +   L DMY++ G +  A  VF      +NVVS+
Sbjct: 220 --LKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSY 277

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + +I  Y       + L +F E+      + PN  T  S+++ACA  AALEQG  +H  +
Sbjct: 278 TCLIDGYVETEQIEKGLSVFVEL--RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 335

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           ++   D    V S LV MY +CG LE     FD +     ++WNSL+S +G HG G  AI
Sbjct: 336 MKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAI 395

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           + F+ M+  GV P+ I+F+S+L  CSHAGLVEEG   F SM K + + P  EHY+C++DL
Sbjct: 396 KFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDL 455

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGRA +L+EA + I  +  EP    W S LG+CRIH + E+ + A+++L +LEP N+G  
Sbjct: 456 LGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGAL 515

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+++YA    W++V+ V+  +    ++K+PG S ++V  K + F + D  H +   ++
Sbjct: 516 VLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIY 575

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  L  ++K  GYVP T  V  D+D   KE+++  HSE++AVAF LI+   G+ I + 
Sbjct: 576 EKLDXLLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVK 635

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCHS  KFISK   ++I+VRD +RFHHF +G CSCGDYW
Sbjct: 636 KNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 186/368 (50%), Gaps = 13/368 (3%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            +H+ L   G+    FL   L+N+YS    +D A  +FD   +R +  W A+   L+   
Sbjct: 26  QLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNS 85

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
           +  E +  +  M   G      +F ++  ++AC +       ++ GK++H   L+ G   
Sbjct: 86  KFSEAIRTFCGMRICGE--VPTQFAFSSAIRACAS----LGSIEMGKQMHCLALKFGIGS 139

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            + + + L DMY++ G +  A  VF +M  K+ VSW+AMI  Y++ G   EAL  F++MI
Sbjct: 140 ELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMI 199

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
            E  ++  +   + S L AC AL A + G+ +H  +++ G +S + V +AL  MY++ G 
Sbjct: 200 DE--EVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGD 257

Query: 341 LELGQCVFD-HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           +E    VF    + R+VVS+  LI  Y       K + +F E+   G+ P+  +F S++ 
Sbjct: 258 MESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIK 317

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIR-PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
           AC++   +E+G  L   + K +    P V   + +VD+ G+   LE A +  +++  +P 
Sbjct: 318 ACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEHAIQAFDEIG-DPT 374

Query: 459 PKVWGSLL 466
              W SL+
Sbjct: 375 EIAWNSLV 382



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 156/340 (45%), Gaps = 43/340 (12%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           L+ GK++HA ++  GY     +   L++MY++ G + +A  +F  M  +N+VSW+AMI+ 
Sbjct: 21  LRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISG 80

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
            ++N    EA+  F  M +      P      S ++ACA+L ++E GK +H   L+ G+ 
Sbjct: 81  LSQNSKFSEAIRTFCGMRICGE--VPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIG 138

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
           S L V S L  MY++CG +     VF+ M  +D VSW ++I  Y   G   +A+  FK+M
Sbjct: 139 SELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKM 198

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEG--------KMLFES------------MRKEHM 422
           I   V+       S LGAC      + G        K+ FES             +   M
Sbjct: 199 IDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDM 258

Query: 423 IRPS-----------VEHYACMVDLLGRANKLEEAAKIIEDLR---IEPGPKVWGSLLGS 468
              S           V  Y C++D      ++E+   +  +LR   IEP    + SL+ +
Sbjct: 259 ESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKA 318

Query: 469 CRIHCNVE----LAERASKRLFELEPTNAGNYVLLADVYA 504
           C     +E    L  +  K  F+ +P  +    +L D+Y 
Sbjct: 319 CANQAALEQGTQLHAQVMKINFDEDPFVSS---ILVDMYG 355



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 1/165 (0%)

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           ++  +  V+Q  A    L +GK +H  ++  G      + + LV MY++CG+L+    +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M +R++VSW ++IS    +    +AI+ F  M   G  P+  +F S + AC+  G +E
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            GK +   +  +  I   +   + + D+  +   + +A K+ E++
Sbjct: 124 MGKQM-HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEM 167


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/429 (45%), Positives = 285/429 (66%), Gaps = 3/429 (0%)

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
           FG    A  +FS+M  ++VVSW++M+ACYA+ G   EAL LF +M   +  + P   T+V
Sbjct: 161 FGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQM--RAVGVKPTEATVV 218

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           S+L ACA L AL++G  +H YI    ++    V +ALV MYA+CGK+ L   VF+ M+ +
Sbjct: 219 SLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESK 278

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           DV++WN++I+   +HG+  +A ++FKEM   GV P+ I+FV++L ACSHAG+V+EG+ L 
Sbjct: 279 DVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLL 338

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
           + M   + I P VEHY C++DLL RA  LEEA ++I  + +EP P   G+LLG CRIH N
Sbjct: 339 DCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGN 398

Query: 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
            EL E   KRL  L+P ++G Y+LL+++YAAA  WD+ ++V+ L++  G+ KVPG S IE
Sbjct: 399 FELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIE 458

Query: 535 VKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK-GYVPQTKVVLYDLDAEEKERIVLG 593
           +K  ++ FV+ D  HP+  +++  L  +   +K   G+   T  VL D++ E+KE  +  
Sbjct: 459 LKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPV 518

Query: 594 HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
           HSEKLA+A+GL++    E IRI KNLR+C DCH  TK ISK   +EI+VRD NRFHHF +
Sbjct: 519 HSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFED 578

Query: 654 GVCSCGDYW 662
           G CSC D+W
Sbjct: 579 GECSCLDFW 587



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 152/344 (44%), Gaps = 49/344 (14%)

Query: 123 NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSD 182
           N  + F   DDA  +F +   R +  WN++       G+  E L L+ +M   G  ++  
Sbjct: 156 NNKNTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVG--VKPT 213

Query: 183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVL--RHGYNGIVHIMTTLIDMYARFGCVMY 240
             T   +L AC         L  G  +H  +   R   N IV   T L+DMYA+ G +  
Sbjct: 214 EATVVSLLSACAH----LGALDKGLHLHTYINDNRIEVNSIVG--TALVDMYAKCGKISL 267

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF+ M  K+V++W+ +IA  A +G   EA  LF+E  M+   + PN +T V++L AC
Sbjct: 268 ATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKE--MKEAGVEPNDITFVAMLSAC 325

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           +    +++G+ +               +  + + Y    K+E   CV D + +  ++   
Sbjct: 326 SHAGMVDEGQKL---------------LDCMSSSYGIEPKVEHYGCVIDLLARAGLLE-- 368

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
                        +A+++   M    + P+P +  ++LG C   G  E G+M+ + +   
Sbjct: 369 -------------EAMELIGTM---PMEPNPCALGALLGGCRIHGNFELGEMVGKRLIN- 411

Query: 421 HMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
             ++P     Y  + ++   A K ++A K+   +++    KV G
Sbjct: 412 --LQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPG 453



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 167/416 (40%), Gaps = 65/416 (15%)

Query: 53  NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++    + G   +AL +     ++   PT+ T   LL +C H  +L   L++H+++ D
Sbjct: 183 NSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIND 242

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           N  + +  + T L+++Y+    +  A  VF+    + +  WN +   + + G  +E   L
Sbjct: 243 NRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRL 302

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           ++ M     G+  +  T+  +L AC                HA ++  G          L
Sbjct: 303 FKEMK--EAGVEPNDITFVAMLSACS---------------HAGMVDEG--------QKL 337

Query: 229 ID-MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           +D M + +G                V  +  +I   AR G+  EA+EL   M ME     
Sbjct: 338 LDCMSSSYGI------------EPKVEHYGCVIDLLARAGLLEEAMELIGTMPME----- 380

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA----LVTMYARCGKLEL 343
           PN   + ++L  C      E G+M+      + L ++ P  S     L  +YA   K + 
Sbjct: 381 PNPCALGALLGGCRIHGNFELGEMV-----GKRLINLQPCHSGRYILLSNIYAAAKKWDD 435

Query: 344 GQCVFDHMDKRDV--VSWNSLISSYG-VHGY-GGKAIQIFKEMIYHGVSPSPISFVSVLG 399
            + V + M    +  V   S+I   G VH +  G         IY  ++       S +G
Sbjct: 436 ARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIG 495

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
             +  G V    +  E   KEH +    E  A    LL   +K  EA +I+++LR+
Sbjct: 496 HSADTGDV---LLDMEEEDKEHALPVHSEKLAIAYGLLHLDSK--EAIRIVKNLRV 546


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/533 (39%), Positives = 310/533 (58%), Gaps = 35/533 (6%)

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           WN +  + T   +    L +Y ++      +  D F    VLKAC       S  + GKE
Sbjct: 127 WNFVITSYTKRNQPRNALNVYAQLRKMDFEV--DNFMAPSVLKACGQ----VSWTQLGKE 180

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW----SAMIACYA 264
           IH  VL+ G +  V +   L+ MY    CV YA  VF +M  ++VVSW    +A++  YA
Sbjct: 181 IHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYA 240

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           + G    A +LF  +  ++       V+  +++  C     LE+G  +    +R   ++I
Sbjct: 241 KCGHLGLARQLFNGLTQKT------VVSWTAMIAGCIRSNRLEEGTKL---FIRMQEENI 291

Query: 325 LP----------------VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
            P                + +ALV MYA+CG +     +F     RD+  WN++I+ + +
Sbjct: 292 FPNEITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAM 351

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           HGYG +A+ IF EM   GV P+ I+F+ +L ACSHAGLV EGK LFE M     + P +E
Sbjct: 352 HGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIE 411

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
           HY CMVDLLGRA  L+EA ++I+ + I+P   VWG+L+ +CR+H N +L E A+ +L E+
Sbjct: 412 HYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEI 471

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
           EP N G  VL++++YAAA+ W +   V++ ++  G++K PG S IEV   ++ F+  D+ 
Sbjct: 472 EPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQS 531

Query: 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
           HPQ  +++ +L  +  ++ E GYVP T  VL ++D EEKE  +  HSEKLA+AFGLI+T+
Sbjct: 532 HPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTA 591

Query: 609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
               IRI KNLR+C DCH+ TK +SK   + I+VRD NRFHHFR G CSCGDY
Sbjct: 592 PSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 50/357 (14%)

Query: 44  PTSLS-SRNKNELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSD 98
           P+ LS S   N +I S  K+   R AL+V +    ++          +L +C   +    
Sbjct: 118 PSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQL 177

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
              +H  +   G D+D F+   L+ +Y     V+ AR VFDK   R +  W     AL  
Sbjct: 178 GKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTAL-- 235

Query: 159 AGRGEEVLELYRRMNGTGTG-------IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
                  L++Y +    G          +    ++T ++  C+ S    + L+ G ++  
Sbjct: 236 -------LDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRS----NRLEEGTKLFI 284

Query: 212 SVLRHGY--NGIVH-----------IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
            +       N I             + T L+DMYA+ G +  AG +F +   +++  W+A
Sbjct: 285 RMQEENIFPNEITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNA 344

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-----KMIH 313
           +I  +A +G   EAL++F E  ME   + PN +T + +L AC+    + +G     KM+H
Sbjct: 345 IITGFAMHGYGEEALDIFAE--MERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVH 402

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
            +    GL   +     +V +  R G L+    +   M  K + + W +L+++  +H
Sbjct: 403 TF----GLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 455


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/485 (40%), Positives = 310/485 (63%), Gaps = 7/485 (1%)

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           +R D  T   ++ AC         L+ GK +H+     G +  + +   ++DMY +   +
Sbjct: 7   LRPDEVTMVSLVPACAQ----LGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDI 62

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
             A  VF+++  K+V+SW++M++  A++G   E+L LFR+M  + H + P+ +T+V VL 
Sbjct: 63  ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKM--QLHKIEPDEITLVGVLS 120

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           ACA   AL+QGK IH  I +  ++  L + +ALV MYA+CG ++L   VF  M  R+V +
Sbjct: 121 ACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFT 180

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           WN++I    +HG+G  AI +F +M    + P  ++F+++L ACSHAGLV+EG  +F++M+
Sbjct: 181 WNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMK 240

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
            +  I P +EHY C+VDLL RA K+++A   IE++ I+    +W +LLG+CR   + +LA
Sbjct: 241 NKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLA 300

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRK 538
           E+  +R+ ELEP + G YV+L+++YA    WD   ++++ ++ +G++K PG S IE+   
Sbjct: 301 EKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGM 360

Query: 539 MYSFVSVDEFHPQFEQLHALLINLSAEMK-EKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
           ++ FV+ D  H Q EQ++A++  ++  +  + G+VP T  VL+D++ EEKE  +  HSEK
Sbjct: 361 IHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEK 420

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+A GLI+T  G  IRI KNLR+C DCHSF K  SK  N+EI+ RD +RFHHF+ G CS
Sbjct: 421 LAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCS 480

Query: 658 CGDYW 662
           C D+W
Sbjct: 481 CMDFW 485



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 151/308 (49%), Gaps = 10/308 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T   L+ +C    +L     +HS+  + G D++  +   ++++Y   D ++ A+ V
Sbjct: 9   PDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEV 68

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++ R + +  W ++   L  +G  +E L L+R+M      I  D  T   VL AC  + 
Sbjct: 69  FNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQ--LHKIEPDEITLVGVLSACAQTG 126

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  GK IH  + +   N  + + T L+DMYA+ G +  A  VF +M V+NV +W+
Sbjct: 127 A----LDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWN 182

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYI 316
           AMI   A +G   +A+ LF +  ME   L P+ VT +++L AC+    +++G  M     
Sbjct: 183 AMIGGLAMHGHGEDAISLFDQ--MEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMK 240

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKA 375
            +  ++  +     +V +  R  K++      ++M  K + V W +L+ +    G+   A
Sbjct: 241 NKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLA 300

Query: 376 IQIFKEMI 383
            +I + +I
Sbjct: 301 EKIXRRVI 308



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 108/188 (57%), Gaps = 2/188 (1%)

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
           +L P+ VTMVS++ ACA L  LE+GK++H Y    GLD  L V +A++ MY +C  +E  
Sbjct: 6   NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESA 65

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           Q VF+ + ++DV+SW S++S     GY  +++ +F++M  H + P  I+ V VL AC+  
Sbjct: 66  QEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQT 125

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G +++GK +   + K  +    V   A +VD+  +   ++ A ++   +R+      W +
Sbjct: 126 GALDQGKYIHLLIDKFEINCDLVLETA-LVDMYAKCGSIDLALQVFRRMRVR-NVFTWNA 183

Query: 465 LLGSCRIH 472
           ++G   +H
Sbjct: 184 MIGGLAMH 191



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 113/257 (43%), Gaps = 25/257 (9%)

Query: 55  LIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           ++  L K G  +++L +        IEP+    T   +L +C    +L     +H  +  
Sbjct: 83  MLSGLAKSGYFQESLALFRKMQLHKIEPDEI--TLVGVLSACAQTGALDQGKYIHLLIDK 140

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              + D  L T L+++Y+   S+D A  VF + R R ++ WNA+   L + G GE+ + L
Sbjct: 141 FEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISL 200

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSC---GFSLLKHGKEIHASVLRHGYNGIVHIM 225
           + +M      +  D  T+  +L AC  +     G ++ +  K       R  + G V   
Sbjct: 201 FDQME--XDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCV--- 255

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-ACYARNGMAFEALE-LFREMIME 282
              +D+  R   V  A      M +K N V W+ ++ AC  R+G  F+  E + R +I  
Sbjct: 256 ---VDLLCRARKVDDALAFIENMPIKANSVLWATLLGAC--RSGGHFDLAEKIXRRVIEL 310

Query: 283 SHDLCPNSVTMVSVLQA 299
             D C   V M+S L A
Sbjct: 311 EPDSCGRYV-MLSNLYA 326


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/614 (35%), Positives = 349/614 (56%), Gaps = 24/614 (3%)

Query: 62   QGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP 115
             G+L+ +L + S      I PN  + T+   L +C   N+L   L +H      GF+   
Sbjct: 456  NGDLKGSLSLFSEMGRQGIYPN--EFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMV 513

Query: 116  FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175
             +   L+++YS    +++A  VF +   R++  WNA+      AG G + L+ +  M   
Sbjct: 514  EVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEA 573

Query: 176  GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN--GIVHIMTTLIDMYA 233
                R D FT T +LKAC  SS G  ++  GK+IH  ++R G++      I  +L+D+Y 
Sbjct: 574  NIKERPDEFTLTSLLKAC--SSTG--MIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYV 629

Query: 234  RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
            + G +  A   F Q+  K ++SWS++I  YA+ G   EA+ LF+ +   +  +  +S  +
Sbjct: 630  KCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQI--DSFAL 687

Query: 294  VSVLQACAALAALEQGKMIHGYILR--RGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
             S++   A  A L QGK +    ++   GL++   V++++V MY +CG ++  +  F  M
Sbjct: 688  SSIIGVFADFALLRQGKQMQALAVKLPSGLET--SVLNSVVDMYLKCGLVDEAEKCFAEM 745

Query: 352  DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
              +DV+SW  +I+ YG HG G K+++IF EM+ H + P  + +++VL ACSH+G+++EG+
Sbjct: 746  QLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGE 805

Query: 412  MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
             LF  + + H I+P VEHYAC+VDLLGRA +L+EA  +I+ + I+P   +W +LL  CR+
Sbjct: 806  ELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRV 865

Query: 472  HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
            H ++EL +   K L  ++  N  NYV+++++Y  A  W+E    + L   +GL+K  G S
Sbjct: 866  HGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMS 925

Query: 532  RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK-GYVPQTKVVLYDLDAEEKERI 590
             +E++R+++ F S ++ HP    +   L      ++E+ GYV   K  L+D+D E KE  
Sbjct: 926  WVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEEN 985

Query: 591  VLGHSEKLAVAFGLIN---TSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNR 647
            +  HSEKLA+   L       KG+TIR+ KNLR+C DCH F K +SK      +VRD  R
Sbjct: 986  LRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVR 1045

Query: 648  FHHFRNGVCSCGDY 661
            FH F +G CSCGDY
Sbjct: 1046 FHSFEDGCCSCGDY 1059



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 151/295 (51%), Gaps = 8/295 (2%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LI++Y        A  VFD    R +  W+AL     L G  +  L L+  M     GI 
Sbjct: 418 LIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG--RQGIY 475

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            + FT++  LKAC       + L+ G +IH   L+ G+  +V +  +L+DMY++ G +  
Sbjct: 476 PNEFTFSTNLKACGL----LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINE 531

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF ++  ++++SW+AMIA +   G   +AL+ F  M   +    P+  T+ S+L+AC
Sbjct: 532 AEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKAC 591

Query: 301 AALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           ++   +  GK IHG+++R G    S   +  +LV +Y +CG L   +  FD + ++ ++S
Sbjct: 592 SSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMIS 651

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           W+SLI  Y   G   +A+ +FK +          +  S++G  +   L+ +GK +
Sbjct: 652 WSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQM 706



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 6/242 (2%)

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           LIDMY +    + A  VF  M  +NVVSWSA+++ +  NG    +L LF EM  +   + 
Sbjct: 418 LIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQG--IY 475

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           PN  T  + L+AC  L ALE+G  IHG+ L+ G + ++ V ++LV MY++CG++   + V
Sbjct: 476 PNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKV 535

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF--VSVLGACSHAG 405
           F  +  R ++SWN++I+ +   GYG KA+  F  M    +   P  F   S+L ACS  G
Sbjct: 536 FRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTG 595

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHY-ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           ++  GK +   + +     PS       +VDL  +   L  A K  + ++ E     W S
Sbjct: 596 MIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIK-EKTMISWSS 654

Query: 465 LL 466
           L+
Sbjct: 655 LI 656



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 160/328 (48%), Gaps = 18/328 (5%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I      G   +ALD        +I+  P + T   LL +C+    +     +H  L
Sbjct: 548 NAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFL 607

Query: 107 TDNGF--DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
             +GF       +   L+++Y     +  AR  FD+ + +T+  W++L       G   E
Sbjct: 608 VRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVE 667

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224
            + L++R+    + I S      + L + +     F+LL+ GK++ A  ++        +
Sbjct: 668 AMGLFKRLQELNSQIDS------FALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSV 721

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
           + +++DMY + G V  A   F++M +K+V+SW+ +I  Y ++G+  +++ +F EM+   H
Sbjct: 722 LNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEML--RH 779

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILR-RGLDSILPVVSALVTMYARCGKLEL 343
           ++ P+ V  ++VL AC+    +++G+ +   +L   G+   +   + +V +  R G+L+ 
Sbjct: 780 NIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKE 839

Query: 344 GQCVFDHMD-KRDVVSWNSLISSYGVHG 370
            + + D M  K +V  W +L+S   VHG
Sbjct: 840 AKHLIDTMPIKPNVGIWQTLLSLCRVHG 867


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/534 (38%), Positives = 318/534 (59%), Gaps = 47/534 (8%)

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGR-GEEVLELYRRMNGTGTGIRSDRFTYTY 188
           SVDD+R VF++     +  W A+  A   +G   +E +EL+ +M                
Sbjct: 10  SVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVN---------- 59

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
               CV +S                              LI MYAR G +  A   F  +
Sbjct: 60  ----CVGNS------------------------------LISMYARSGRMEDARKAFDIL 85

Query: 249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308
             KN+VS++A++  YA+N  + EA  LF E+      +  ++ T  S+L   A++ A+ +
Sbjct: 86  FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI--ADTGIGISAFTFASLLSGAASIGAMGK 143

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           G+ IHG +L+ G  S   + +AL++MY+RCG +E    VF+ M+ R+V+SW S+I+ +  
Sbjct: 144 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 203

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
           HG+  +A+++F +M+  G  P+ I++V+VL ACSH G++ EG+  F SM KEH I P +E
Sbjct: 204 HGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRME 263

Query: 429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
           HYACMVDLLGR+  L EA + I  + +     VW +LLG+CR+H N EL   A++ + E 
Sbjct: 264 HYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ 323

Query: 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
           EP +   Y+LL++++A+A  W +V ++++ ++ R L K  G S IEV+ +++ F   +  
Sbjct: 324 EPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETS 383

Query: 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
           HPQ  Q++  L  L++++KE GY+P T  VL+D++ E+KE+ +  HSEK+AVAFGLI+TS
Sbjct: 384 HPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTS 443

Query: 609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           + + IRI KNLR+C DCH+  K+IS    +EI+VRD NRFHH +NGVCSC DYW
Sbjct: 444 QSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 154/311 (49%), Gaps = 17/311 (5%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LI++Y+    ++DAR  FD    + +  +NA+        + EE   L+  +  TG GI 
Sbjct: 65  LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 124

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
           +  FT+  +L    A+S G   +  G++IH  +L+ GY     I   LI MY+R G +  
Sbjct: 125 A--FTFASLLSG--AASIG--AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 178

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF++M  +NV+SW++MI  +A++G A  ALE+F +M+       PN +T V+VL AC
Sbjct: 179 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTK--PNEITYVAVLSAC 236

Query: 301 AALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVS 358
           + +  + +G K  +      G+   +   + +V +  R G L       + M    D + 
Sbjct: 237 SHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALV 296

Query: 359 WNSLISSYGVHG---YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           W +L+ +  VHG    G  A     EMI       P +++ +    + AG  ++   + +
Sbjct: 297 WRTLLGACRVHGNTELGRHA----AEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRK 352

Query: 416 SMRKEHMIRPS 426
           SM++ ++I+ +
Sbjct: 353 SMKERNLIKEA 363



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 101/228 (44%), Gaps = 19/228 (8%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+  LL       ++     +H  L   G+  +  +   LI++YS   +++ A  VF++ 
Sbjct: 127 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEM 186

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             R +  W ++       G     LE++ +M  TGT  + +  TY  VL AC  S  G  
Sbjct: 187 EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGT--KPNEITYVAVLSAC--SHVG-- 240

Query: 202 LLKHGKEIHASVLRHGYNGIVHIM---TTLIDMYARFGCVMYA-GFVFSQMAVKNVVSWS 257
           ++  G++   S+ +   +GIV  M     ++D+  R G ++ A  F+ S   + + + W 
Sbjct: 241 MISEGQKHFNSMYKE--HGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWR 298

Query: 258 AMIACYARNGMAFEALELFR---EMIMESHDLCPNSVTMVSVLQACAA 302
            ++     +G      EL R   EMI+E     P +  ++S L A A 
Sbjct: 299 TLLGACRVHGNT----ELGRHAAEMILEQEPDDPAAYILLSNLHASAG 342


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/561 (36%), Positives = 331/561 (59%), Gaps = 8/561 (1%)

Query: 102  VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
            +H+      +D +  +   L+++Y+   +++DAR  F+      + +W+ +        +
Sbjct: 654  IHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQ 713

Query: 162  GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
             E+  EL+ RM    + +  + F+ + VL+AC        LL  GK+IH   ++ G+   
Sbjct: 714  NEQAFELFIRM--MRSSVSPNEFSLSSVLQACA----NMPLLDLGKQIHNHAIKIGHESE 767

Query: 222  VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
            + +   LID+YA+   +  +  +FS +   N VSW+ +I  Y+++G    AL +FREM  
Sbjct: 768  LFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREM-- 825

Query: 282  ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
             +  +    VT  SVL+ACA+ A++     +H  I +   +S   V ++L+  YA+CG +
Sbjct: 826  RAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCI 885

Query: 342  ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
               + +F+ + + D+VSWN++IS Y VHG    A ++F  M  + +  + I+FV++L  C
Sbjct: 886  RDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVC 945

Query: 402  SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
               GLV +G  LF+SMR +H I PS+EHY C+V LLGRA +L +A   I D+   P   V
Sbjct: 946  GSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMV 1005

Query: 462  WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
            W +LL SC +H NVEL   +++++ E+EP +   YVLL+++Y+AA   D+V   ++ +  
Sbjct: 1006 WRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRN 1065

Query: 522  RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
             G++K PG S +E+K ++++F    E HP    ++A+L  L+ +   +GYVP T  VL+D
Sbjct: 1066 IGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEVLHD 1125

Query: 582  LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
            L+ E+K R++  HSE+LA+A+GL+ T  G  IRI KNLR C DCH+  K ISK   +EI+
Sbjct: 1126 LEEEQKVRMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEII 1185

Query: 642  VRDVNRFHHFRNGVCSCGDYW 662
            VRD+NRFHHF  G CSCGDYW
Sbjct: 1186 VRDINRFHHFEEGTCSCGDYW 1206



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 180/385 (46%), Gaps = 19/385 (4%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG--FDQDPFLVTKLINVYSHFDSVDD 133
           P    + Y  LL  C           VH H+  +G     D F    L+N+Y+       
Sbjct: 424 PGVDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGS 483

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A  VFD    R +  +  L +   L G  EE   L++R+   G  +  ++F  T VLK  
Sbjct: 484 AHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEV--NQFVLTTVLKLV 541

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
           VA       L     +HA   + G++    + + LID Y+  G V  A  VF  +  K+ 
Sbjct: 542 VA----MDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDA 597

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+W+AM++CY+ N      L++F +M +    L P ++T  SVL+A   L+++  GK IH
Sbjct: 598 VAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALT--SVLRAAVCLSSVVLGKGIH 655

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
              ++   D+   V  AL+ MYA+CG +E  +  F+ +   DV+ W+ +IS Y       
Sbjct: 656 ACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNE 715

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY--- 430
           +A ++F  M+   VSP+  S  SVL AC++  L++ GK +       H I+   E     
Sbjct: 716 QAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQI-----HNHAIKIGHESELFV 770

Query: 431 -ACMVDLLGRANKLEEAAKIIEDLR 454
              ++DL  + + +E + +I   LR
Sbjct: 771 GNALIDLYAKCSDMESSLEIFSSLR 795



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 12/215 (5%)

Query: 53   NELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
            N +I    K G    AL V     +     TQ TY  +L +C    S++    VH  +  
Sbjct: 803  NTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEK 862

Query: 109  NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            + F+ D  +   LI+ Y+    + DAR +F+  +   +  WNA+     + G+     EL
Sbjct: 863  STFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQEL 922

Query: 169  YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV-LRHGYNGIVHIMTT 227
            +  M  +   I+++  T+  +L  C ++     L+  G  +  S+ L HG    +   T 
Sbjct: 923  FDMM--SKNSIKANDITFVALLSVCGST----GLVSQGLSLFDSMRLDHGIEPSMEHYTC 976

Query: 228  LIDMYARFGCVMYA-GFVFSQMAVKNVVSWSAMIA 261
            ++ +  R G +  A  F+    +  + + W A+++
Sbjct: 977  IVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLS 1011


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/605 (36%), Positives = 339/605 (56%), Gaps = 46/605 (7%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDARHVFDKTRRRTIYVWNA 151
           +S+++    HS L   G   +   ++++      S    ++ A  +F        +++N 
Sbjct: 13  SSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYNT 72

Query: 152 LFRAL-TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
           LF+A  +L+      L  Y  M      +  + FT+  +++AC        L +  K++H
Sbjct: 73  LFKAFFSLSQTPSLSLLFYSHM--LQHCVTPNAFTFPSLIRAC-------KLEEEAKQLH 123

Query: 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS------------- 257
           A VL+ G+ G  + +  LI +Y  FG +  A  VF  M+  NVVSW+             
Sbjct: 124 AHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVD 183

Query: 258 -------------------AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
                              AMIAC+ +     EA  LFR M +E   +  +     ++L 
Sbjct: 184 EAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEK-KMELDRFVAATMLS 242

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           AC  + ALEQG  IH Y+ + G+     + + ++ MY +CG L+    VF  +  + V S
Sbjct: 243 ACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSS 302

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           WN +I  + +HG G  AI++FKEM     V+P  I+FV+VL AC+H+GLVEEG   F  M
Sbjct: 303 WNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYM 362

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
              H I P+ EHY CMVDLL RA +LEEA K+I+++ + P   V G+LLG+CRIH N+EL
Sbjct: 363 VDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLEL 422

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
            E    R+ EL+P N+G YV+L ++YA+   W++V  V++L++ RG++K PG S IE++ 
Sbjct: 423 GEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEG 482

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
            +  FV+    HP  E ++A +  +   ++  G+VP T  VL+DL  EE+E  +  HSEK
Sbjct: 483 VVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEK 542

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+A+GL+ T +GET+R+TKNLR+C+DCH  +K ISK  + +I++RD +RFHHF NG CS
Sbjct: 543 LAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECS 602

Query: 658 CGDYW 662
           C DYW
Sbjct: 603 CKDYW 607



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 127/324 (39%), Gaps = 58/324 (17%)

Query: 44  PTSLSSRNKNELIQSLCKQGNLRQALDV---LSIEPNPTQHTY--ELLLLSCTHHNSLSD 98
           P   +S + N +I    K    R+A  +   + +E       +    +L +CT   +L  
Sbjct: 193 PCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQ 252

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            + +H ++   G   D  L T +I++Y     +D A HVF   + + +  WN +     +
Sbjct: 253 GMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAM 312

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G+GE+ + L++ M      +  D  T+  VL AC                H+ ++  G+
Sbjct: 313 HGKGEDAIRLFKEMEEEAM-VAPDSITFVNVLTACA---------------HSGLVEEGW 356

Query: 219 NGIVHIMTTLIDMYA------RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
               +    ++D++        +GC                     M+   AR G   EA
Sbjct: 357 ----YYFRYMVDVHGIDPTKEHYGC---------------------MVDLLARAGRLEEA 391

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
            ++  EM M      P++  + ++L AC     LE G+ +   ++    ++    V  L 
Sbjct: 392 KKVIDEMPMS-----PDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYV-ILG 445

Query: 333 TMYARCGKLELGQCVFDHMDKRDV 356
            MYA CGK E    V   MD R V
Sbjct: 446 NMYASCGKWEQVAGVRKLMDDRGV 469


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/487 (38%), Positives = 306/487 (62%), Gaps = 15/487 (3%)

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
           ++FT+ ++LKAC A      +   G + HA+ L+ G+    ++  TLI MY+ FG     
Sbjct: 125 NKFTFPFLLKACAALPGSPDV---GLQAHAAALKFGFATDQYVSNTLIHMYSCFG----G 177

Query: 242 GF------VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           GF      VF +M  ++ V+WSAMI  Y R G++ +A++LFREM  +++ +  + VT++ 
Sbjct: 178 GFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREM--QANGVQADEVTVIG 235

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           VL A   L ALE  + +  ++ R G+   + + +AL+   A+CG ++    VF+ M +R 
Sbjct: 236 VLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRS 295

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           VVSW S+I +  + G G +A+++F+EM   GV P  ++F+ VL ACSHAG+V+EG   F+
Sbjct: 296 VVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFD 355

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
           +M+ E+ I P +EHY CMVD+ GRA  +E A + +  + I+P P +W SL+ +CR H  +
Sbjct: 356 AMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRL 415

Query: 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEV 535
           EL E  ++ L    P +  NY++L++V+A    W E   ++R +  RG++KVPG S +E+
Sbjct: 416 ELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVEL 475

Query: 536 KRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHS 595
             +++ F++ DE HPQ++ ++ ++  ++ E++  G++  T  VL DLD E+KE  +  HS
Sbjct: 476 DGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHS 535

Query: 596 EKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGV 655
           EKLA+AF L+ T  G  +R+ KNLR+C DCH+  K IS+   +EI+VRD +RFH F++G 
Sbjct: 536 EKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGS 595

Query: 656 CSCGDYW 662
           CSC D+W
Sbjct: 596 CSCKDFW 602



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 137/298 (45%), Gaps = 13/298 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSD-ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS--VDDA 134
           P + T+  LL +C       D  L  H+     GF  D ++   LI++YS F    + DA
Sbjct: 124 PNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDA 183

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R+VFD+  + +   W+A+       G   + ++L+R M     G+++D  T   VL    
Sbjct: 184 RNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQ--ANGVQADEVTVIGVL---- 237

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
           A++     L+  + +   V R G    V +   LID  A+ G V  A  VF  M  ++VV
Sbjct: 238 AAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVV 297

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIH 313
           SW+++I   A  G   EA+ +F EM +    + P+ V  + VL AC+    +++G     
Sbjct: 298 SWTSVIDALAMEGRGKEAVRVFEEMKVAG--VPPDDVAFIGVLTACSHAGMVDEGCGYFD 355

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
              +  G++  +     +V M+ R G +E        M  + + V W SL+S+   HG
Sbjct: 356 AMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHG 413


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/588 (37%), Positives = 338/588 (57%), Gaps = 27/588 (4%)

Query: 94  NSLSDALNVHSHLTDNGFDQDP---FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN 150
           + +S    +H+      + ++P   FL  K++ + S F  V+ A  VFD     + ++WN
Sbjct: 50  SDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWN 109

Query: 151 ALFRALTL-AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
            L RA      R EE   LYR+M   G     D+ T+ +VLKAC A   GFS    GK++
Sbjct: 110 TLIRACAHDVSRKEEAFMLYRKMLERGES-SPDKHTFPFVLKAC-AYIFGFS---EGKQV 164

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           H  +++HG+ G V++   LI +Y   GC+  A  VF +M  +++VSW++MI    R G  
Sbjct: 165 HCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEY 224

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVV 328
             AL+LFREM        P+  TM SVL ACA L +L  G   H ++LR+  +D  + V+
Sbjct: 225 DSALQLFREM---QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 281

Query: 329 --SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI--Y 384
             ++L+ MY +CG L + + VF  M KRD+ SWN++I  +  HG   +A+  F  M+   
Sbjct: 282 VKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKR 341

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
             V P+ ++FV +L AC+H G V +G+  F+ M +++ I P++EHY C+VDL+ RA  + 
Sbjct: 342 ENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYIT 401

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSC-RIHCNVELAERASKRLFELEPTN-------AGNY 496
           EA  ++  + ++P   +W SLL +C +   +VEL+E  ++ +   +  N       +G Y
Sbjct: 402 EAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAY 461

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+ VYA+A  W++V  V++L+   G++K PG S IE+    + F + D  HPQ +Q++
Sbjct: 462 VLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIY 521

Query: 557 ALLINLSAEMKEKGYVP-QTKVVLYDLDAE-EKERIVLGHSEKLAVAFGLINTSKGETIR 614
             L  +   ++  GY+P +++  L D   +  KE  +  HSE+LA+AFGLIN      IR
Sbjct: 522 QQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIR 581

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I KNLR+C DCH  TK ISK  N EI+VRD  RFHHF++G CSC DYW
Sbjct: 582 IFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 145/296 (48%), Gaps = 12/296 (4%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E +P +HT+  +L +C +    S+   VH  +  +GF  D ++   LI++Y     +D A
Sbjct: 137 ESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLA 196

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R VFD+   R++  WN++  AL   G  +  L+L+R M  +      D +T   VL AC 
Sbjct: 197 RKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS---FEPDGYTMQSVLSACA 253

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGI---VHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
               G   L  G   HA +LR     +   V +  +LI+MY + G +  A  VF  M  +
Sbjct: 254 ----GLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 309

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           ++ SW+AMI  +A +G A EA+  F  M+ +  ++ PNSVT V +L AC     + +G+ 
Sbjct: 310 DLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQ 369

Query: 312 IHGYILRR-GLDSILPVVSALVTMYARCGKL-ELGQCVFDHMDKRDVVSWNSLISS 365
               ++R   ++  L     +V + AR G + E    V     K D V W SL+ +
Sbjct: 370 YFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDA 425


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/588 (37%), Positives = 338/588 (57%), Gaps = 27/588 (4%)

Query: 94  NSLSDALNVHSHLTDNGFDQDP---FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN 150
           + +S    +H+      + ++P   FL  K++ + S F  V+ A  VFD     + ++WN
Sbjct: 59  SDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWN 118

Query: 151 ALFRALTL-AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
            L RA      R EE   LYR+M   G     D+ T+ +VLKAC A   GFS    GK++
Sbjct: 119 TLIRACAHDVSRKEEAFMLYRKMLERGES-SPDKHTFPFVLKAC-AYIFGFS---EGKQV 173

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           H  +++HG+ G V++   LI +Y   GC+  A  VF +M  +++VSW++MI    R G  
Sbjct: 174 HCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEY 233

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVV 328
             AL+LFREM        P+  TM SVL ACA L +L  G   H ++LR+  +D  + V+
Sbjct: 234 DSALQLFREM---QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 290

Query: 329 --SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI--Y 384
             ++L+ MY +CG L + + VF  M KRD+ SWN++I  +  HG   +A+  F  M+   
Sbjct: 291 VKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKR 350

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
             V P+ ++FV +L AC+H G V +G+  F+ M +++ I P++EHY C+VDL+ RA  + 
Sbjct: 351 ENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYIT 410

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSC-RIHCNVELAERASKRLFELEPTN-------AGNY 496
           EA  ++  + ++P   +W SLL +C +   +VEL+E  ++ +   +  N       +G Y
Sbjct: 411 EAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAY 470

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+ VYA+A  W++V  V++L+   G++K PG S IE+    + F + D  HPQ +Q++
Sbjct: 471 VLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIY 530

Query: 557 ALLINLSAEMKEKGYVP-QTKVVLYDLDAE-EKERIVLGHSEKLAVAFGLINTSKGETIR 614
             L  +   ++  GY+P +++  L D   +  KE  +  HSE+LA+AFGLIN      IR
Sbjct: 531 QQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIR 590

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I KNLR+C DCH  TK ISK  N EI+VRD  RFHHF++G CSC DYW
Sbjct: 591 IFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 145/296 (48%), Gaps = 12/296 (4%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E +P +HT+  +L +C +    S+   VH  +  +GF  D ++   LI++Y     +D A
Sbjct: 146 ESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLA 205

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R VFD+   R++  WN++  AL   G  +  L+L+R M  +      D +T   VL AC 
Sbjct: 206 RKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS---FEPDGYTMQSVLSACA 262

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGI---VHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
               G   L  G   HA +LR     +   V +  +LI+MY + G +  A  VF  M  +
Sbjct: 263 ----GLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 318

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           ++ SW+AMI  +A +G A EA+  F  M+ +  ++ PNSVT V +L AC     + +G+ 
Sbjct: 319 DLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQ 378

Query: 312 IHGYILRR-GLDSILPVVSALVTMYARCGKL-ELGQCVFDHMDKRDVVSWNSLISS 365
               ++R   ++  L     +V + AR G + E    V     K D V W SL+ +
Sbjct: 379 YFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDA 434


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/445 (43%), Positives = 298/445 (66%), Gaps = 2/445 (0%)

Query: 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           ++ G+++H+  +R+G+  +V +  TL+ MYA  G    A  +F  MA +N+V+W+++I  
Sbjct: 11  VREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVING 70

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322
           YA NG   EAL LFREM +   +  P+  TMVS+L ACA L AL  G+  H Y+++ GLD
Sbjct: 71  YALNGRPNEALTLFREMGLRGVE--PDGFTMVSLLSACAELGALALGRRAHVYMVKVGLD 128

Query: 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             L   +AL+ +YA+CG +     VFD M+++ VVSW SLI    V+G+G +A+++FKE+
Sbjct: 129 GNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKEL 188

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              G+ PS I+FV VL ACSH G+V+EG   F+ M++E+ I P +EHY CMVDLLGRA  
Sbjct: 189 ERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGL 248

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502
           +++A + I+++ ++P   VW +LLG+C IH ++ L E A  +L +LEP ++G+YVLL+++
Sbjct: 249 VKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNL 308

Query: 503 YAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINL 562
           YA+   W +V +V+R +   G++K PG S +E++ +++ FV  D  HPQ E+++  L  +
Sbjct: 309 YASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEI 368

Query: 563 SAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLC 622
           +  +K +GYVP    VL D++ EEKE  +  HSEK+A+AF LINT+ G  IR+ KNLR+C
Sbjct: 369 TKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVC 428

Query: 623 EDCHSFTKFISKFANKEILVRDVNR 647
            DCH   K ISK  ++EI+VRD +R
Sbjct: 429 ADCHLAIKLISKVFDREIVVRDRSR 453



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 136/275 (49%), Gaps = 16/275 (5%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VHS    NGF+   F+   L+++Y+     + A  +F+    R +  WN++     L GR
Sbjct: 17  VHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGR 76

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
             E L L+R M   G  +  D FT   +L AC         L  G+  H  +++ G +G 
Sbjct: 77  PNEALTLFREMGLRG--VEPDGFTMVSLLSACAE----LGALALGRRAHVYMVKVGLDGN 130

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           +H    L+D+YA+ G +  A  VF +M  K+VVSW+++I   A NG   EALELF+E  +
Sbjct: 131 LHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKE--L 188

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-SILPVV---SALVTMYAR 337
           E   L P+ +T V VL AC+    +++G     Y  R   +  I+P +     +V +  R
Sbjct: 189 ERKGLMPSEITFVGVLYACSHCGMVDEG---FDYFKRMKEEYGIVPKIEHYGCMVDLLGR 245

Query: 338 CGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGY 371
            G ++       +M  + + V W +L+ +  +HG+
Sbjct: 246 AGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGH 280



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 2/169 (1%)

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           +A A L  + +G+ +H   +R G +S++ V + LV MYA CG  E    +F+ M +R++V
Sbjct: 3   RAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLV 62

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           +WNS+I+ Y ++G   +A+ +F+EM   GV P   + VS+L AC+  G +  G+     M
Sbjct: 63  TWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM 122

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
            K  +   ++     ++DL  +   + +A K+ +++  E     W SL+
Sbjct: 123 VKVGL-DGNLHAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLI 169



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 17/192 (8%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T   LL +C    +L+     H ++   G D +      L+++Y+   S+  A  V
Sbjct: 94  PDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKV 153

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FD+   +++  W +L   L + G G+E LEL++ +     G+     T+  VL AC  S 
Sbjct: 154 FDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELE--RKGLMPSEITFVGVLYAC--SH 209

Query: 198 C-----GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK- 251
           C     GF   K  KE +  V +  + G       ++D+  R G V  A      M ++ 
Sbjct: 210 CGMVDEGFDYFKRMKEEYGIVPKIEHYGC------MVDLLGRAGLVKQAHEFIQNMPMQP 263

Query: 252 NVVSWSAMI-AC 262
           N V W  ++ AC
Sbjct: 264 NAVVWRTLLGAC 275


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/662 (35%), Positives = 354/662 (53%), Gaps = 53/662 (8%)

Query: 42  TTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDAL- 100
           T  T L S   N L+    K   L  A  VLS+    T  T+  L+  C H+     AL 
Sbjct: 35  THVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALL 94

Query: 101 ----------------------------------NVHSHLTDNGFDQDPFLVTKLINVYS 126
                                              +H      G   D F+     ++Y 
Sbjct: 95  HFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYC 154

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRR---MNGTGTGIRSDR 183
                 DA ++FD+  +R +  WNA         R  + +  ++    ++G    I    
Sbjct: 155 KTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSI---- 210

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
            T+   L ACV        L  G+++HA ++R GY   V +   LID Y + G ++ A  
Sbjct: 211 -TFCAFLNACV----DMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEM 265

Query: 244 VFSQMA-VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA 302
           VF+++   KNVVSW +M+A   +N     A  +F +   E     P    + SVL ACA 
Sbjct: 266 VFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKEVE---PTDFMISSVLSACAE 322

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           L  LE G+ +H   ++  ++  + V SALV MY +CG +E  + VF  + +R++V+WN++
Sbjct: 323 LGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAM 382

Query: 363 ISSYGVHGYGGKAIQIFKEMIY--HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           I  Y   G    A+++F+EM    HG+ PS ++ +S+L  CS  G VE G  +FESMR  
Sbjct: 383 IGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLN 442

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           + I P  EH+AC+VDLLGR+  ++ A + I+++ I+P   VWG+LLG+CR+H   EL + 
Sbjct: 443 YGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKI 502

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
           A+++LFEL+  ++GN+V+L+++ A+A  W+E   V++ ++  G++K  G S I VK +++
Sbjct: 503 AAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIH 562

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
            F + D  H +  ++ A+L  L   MKE GYVP T + L+DL+ EEK   V  HSEK+A+
Sbjct: 563 VFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIAL 622

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           AFGLI   +G  IRITKNLR+C DCHS  KFIS+   +EI+VRD +RFH F++G CSC D
Sbjct: 623 AFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKD 682

Query: 661 YW 662
           YW
Sbjct: 683 YW 684



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 201/426 (47%), Gaps = 13/426 (3%)

Query: 102 VHSHLTDNGFDQDP-FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           +H+H+        P FL   L+N+YS  D ++ A+HV   T  RT+  W +L        
Sbjct: 28  IHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHNR 87

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
           R    L  +  M      ++ + FT+  V KA    S    +   GK+IH   L+ G   
Sbjct: 88  RFLPALLHFTNMR--RDNVQPNDFTFPCVFKA----SAFVQIPMTGKQIHGLALKGGMIY 141

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            V +  +  DMY + G    A  +F +M  +N+ +W+A I+   ++  + +A+  F+E +
Sbjct: 142 DVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFL 201

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
               +  PNS+T  + L AC  +  L  G+ +H +I+R G    + V + L+  Y +CG 
Sbjct: 202 CVHGE--PNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGD 259

Query: 341 LELGQCVFDHM-DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
           +   + VF+ + ++++VVSW S++++   +    +A  +F +     V P+     SVL 
Sbjct: 260 IVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQA-RKEVEPTDFMISSVLS 318

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
           AC+  G +E G+ +  ++  +  +  ++   + +VD+ G+   +E A ++  +L  E   
Sbjct: 319 ACAELGGLELGRSV-HALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELP-ERNL 376

Query: 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
             W +++G      ++++A R  + +         +YV L  + +       V+R  ++ 
Sbjct: 377 VTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIF 436

Query: 520 EARGLQ 525
           E+  L 
Sbjct: 437 ESMRLN 442


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/480 (40%), Positives = 299/480 (62%), Gaps = 7/480 (1%)

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           F ++  LKAC         L  G+ +HA V++        +   L+ +Y +  C      
Sbjct: 31  FAFSTALKACA----DLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLK 86

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF QM  +NV SW+++I+ + +     EAL++FR M  E      + VT+ ++L  CA +
Sbjct: 87  VFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGF--SWVTLTTILPICARV 144

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
            AL  GK IH  I++      + V+++LV MY +CG ++ G+ +FD M  +D+ SWN+++
Sbjct: 145 TALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTML 204

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           + Y ++GY   A+ +F EM   G+ P  ++F+++L  CSHAGL E+G+ LF  M  +  +
Sbjct: 205 TGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGV 264

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
            PS+EHYAC+VD+LGRA +++ A  +++++ ++    +WGSLL SCR+H  V LAE  + 
Sbjct: 265 SPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLHNEVPLAEAIAN 324

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
           RLFELEP N GNYV+L+++YA A MWD V  V+ +++ R ++K  G S I+VK K++SFV
Sbjct: 325 RLFELEPYNPGNYVMLSNIYANAGMWDSVNMVREMMQTRRIRKEAGCSWIQVKNKIHSFV 384

Query: 544 SVDEFHPQFEQLHALLIN-LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAF 602
           +   F  +    +  + N L   M+E GY+P T VVL+D++ E K   V GHSE+LA  F
Sbjct: 385 AGGGFEFRNSDEYKKIWNKLREAMEEFGYIPNTDVVLHDVNEETKAMWVCGHSERLATVF 444

Query: 603 GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            LI+T+ G  IRITKNLR+C DCHS+ K +S+   + I++RD NRFHHF+ G CSC DYW
Sbjct: 445 SLIHTAAGMPIRITKNLRVCVDCHSWIKIVSRVTGRVIVLRDTNRFHHFKEGACSCNDYW 504



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 169/369 (45%), Gaps = 17/369 (4%)

Query: 61  KQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPF 116
           K G LR+AL    ++L     P    +   L +C     L     VH+ +  +    D  
Sbjct: 7   KNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGPDQV 66

Query: 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTG 176
           +   L+ +Y+  +  ++   VFD+   R +  WN+L        +  E L+++RRM   G
Sbjct: 67  VNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREG 126

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
            G      T T +L  C       + L  GKEIHA +++      V ++ +L+DMY + G
Sbjct: 127 MGF--SWVTLTTILPICAR----VTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCG 180

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            V Y   +F  M  K++ SW+ M+  YA NG    A++LF E  M S  + P+ VT +++
Sbjct: 181 VVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNE--MASCGIRPDDVTFIAL 238

Query: 297 LQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           L  C+     E G K+ H   +  G+   L   + LV M  R G+++    V  +M  + 
Sbjct: 239 LSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKT 298

Query: 356 VVS-WNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKML 413
             S W SL++S  +H     A  I   +    + P +P ++V +    ++AG+ +   M+
Sbjct: 299 SGSIWGSLLNSCRLHNEVPLAEAIANRLFE--LEPYNPGNYVMLSNIYANAGMWDSVNMV 356

Query: 414 FESMRKEHM 422
            E M+   +
Sbjct: 357 REMMQTRRI 365



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 3/196 (1%)

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           M   Y++NG   EAL ++ EM+    +  P +    + L+ACA L  L  G+ +H  +++
Sbjct: 1   MAIGYSKNGFLREALLVYVEMLWNCME--PGNFAFSTALKACADLRELWVGRGVHAQVVK 58

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
                   V + L+ +Y +C        VFD M +R+V SWNSLIS +      G+A+ +
Sbjct: 59  SSEGPDQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDV 118

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
           F+ M   G+  S ++  ++L  C+    +  GK +   + K    RP V     +VD+  
Sbjct: 119 FRRMQREGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSAR-RPDVLVLNSLVDMYV 177

Query: 439 RANKLEEAAKIIEDLR 454
           +   ++   ++ + +R
Sbjct: 178 KCGVVDYGRRLFDGMR 193


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/588 (37%), Positives = 338/588 (57%), Gaps = 27/588 (4%)

Query: 94  NSLSDALNVHSHLTDNGFDQDP---FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN 150
           + +S    +H+      + ++P   FL  K++ + S F  V+ A  VFD     + ++WN
Sbjct: 116 SDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWN 175

Query: 151 ALFRALTL-AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
            L RA      R EE   LYR+M   G     D+ T+ +VLKAC A   GFS    GK++
Sbjct: 176 TLIRACAHDVSRKEEAFMLYRKMLERGES-SPDKHTFPFVLKAC-AYIFGFS---EGKQV 230

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           H  +++HG+ G V++   LI +Y   GC+  A  VF +M  +++VSW++MI    R G  
Sbjct: 231 HCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEY 290

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVV 328
             AL+LFREM        P+  TM SVL ACA L +L  G   H ++LR+  +D  + V+
Sbjct: 291 DSALQLFREM---QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 347

Query: 329 --SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI--Y 384
             ++L+ MY +CG L + + VF  M KRD+ SWN++I  +  HG   +A+  F  M+   
Sbjct: 348 VKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKR 407

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
             V P+ ++FV +L AC+H G V +G+  F+ M +++ I P++EHY C+VDL+ RA  + 
Sbjct: 408 ENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYIT 467

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSC-RIHCNVELAERASKRLFELEPTN-------AGNY 496
           EA  ++  + ++P   +W SLL +C +   +VEL+E  ++ +   +  N       +G Y
Sbjct: 468 EAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAY 527

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+ VYA+A  W++V  V++L+   G++K PG S IE+    + F + D  HPQ +Q++
Sbjct: 528 VLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIY 587

Query: 557 ALLINLSAEMKEKGYVP-QTKVVLYDLDAE-EKERIVLGHSEKLAVAFGLINTSKGETIR 614
             L  +   ++  GY+P +++  L D   +  KE  +  HSE+LA+AFGLIN      IR
Sbjct: 588 QQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIR 647

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I KNLR+C DCH  TK ISK  N EI+VRD  RFHHF++G CSC DYW
Sbjct: 648 IFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 145/296 (48%), Gaps = 12/296 (4%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E +P +HT+  +L +C +    S+   VH  +  +GF  D ++   LI++Y     +D A
Sbjct: 203 ESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLA 262

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R VFD+   R++  WN++  AL   G  +  L+L+R M  +      D +T   VL AC 
Sbjct: 263 RKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS---FEPDGYTMQSVLSACA 319

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGI---VHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
               G   L  G   HA +LR     +   V +  +LI+MY + G +  A  VF  M  +
Sbjct: 320 ----GLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 375

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           ++ SW+AMI  +A +G A EA+  F  M+ +  ++ PNSVT V +L AC     + +G+ 
Sbjct: 376 DLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQ 435

Query: 312 IHGYILRR-GLDSILPVVSALVTMYARCGKL-ELGQCVFDHMDKRDVVSWNSLISS 365
               ++R   ++  L     +V + AR G + E    V     K D V W SL+ +
Sbjct: 436 YFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDA 491


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/588 (37%), Positives = 338/588 (57%), Gaps = 27/588 (4%)

Query: 94  NSLSDALNVHSHLTDNGFDQDP---FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN 150
           + +S    +H+      + ++P   FL  K++ + S F  V+ A  VFD     + ++WN
Sbjct: 36  SDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWN 95

Query: 151 ALFRALTL-AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
            L RA      R EE   LYR+M   G     D+ T+ +VLKAC A   GFS    GK++
Sbjct: 96  TLIRACAHDVSRKEEAFMLYRKMLERGES-SPDKHTFPFVLKAC-AYIFGFS---EGKQV 150

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
           H  +++HG+ G V++   LI +Y   GC+  A  VF +M  +++VSW++MI    R G  
Sbjct: 151 HCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEY 210

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVV 328
             AL+LFREM        P+  TM SVL ACA L +L  G   H ++LR+  +D  + V+
Sbjct: 211 DSALQLFREM---QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 267

Query: 329 --SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI--Y 384
             ++L+ MY +CG L + + VF  M KRD+ SWN++I  +  HG   +A+  F  M+   
Sbjct: 268 VKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKR 327

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
             V P+ ++FV +L AC+H G V +G+  F+ M +++ I P++EHY C+VDL+ RA  + 
Sbjct: 328 ENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYIT 387

Query: 445 EAAKIIEDLRIEPGPKVWGSLLGSC-RIHCNVELAERASKRLFELEPTN-------AGNY 496
           EA  ++  + ++P   +W SLL +C +   +VEL+E  ++ +   +  N       +G Y
Sbjct: 388 EAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAY 447

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           VLL+ VYA+A  W++V  V++L+   G++K PG S IE+    + F + D  HPQ +Q++
Sbjct: 448 VLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIY 507

Query: 557 ALLINLSAEMKEKGYVP-QTKVVLYDLDAE-EKERIVLGHSEKLAVAFGLINTSKGETIR 614
             L  +   ++  GY+P +++  L D   +  KE  +  HSE+LA+AFGLIN      IR
Sbjct: 508 QQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIR 567

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I KNLR+C DCH  TK ISK  N EI+VRD  RFHHF++G CSC DYW
Sbjct: 568 IFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 145/296 (48%), Gaps = 12/296 (4%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E +P +HT+  +L +C +    S+   VH  +  +GF  D ++   LI++Y     +D A
Sbjct: 123 ESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLA 182

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R VFD+   R++  WN++  AL   G  +  L+L+R M  +      D +T   VL AC 
Sbjct: 183 RKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS---FEPDGYTMQSVLSACA 239

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGI---VHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
               G   L  G   HA +LR     +   V +  +LI+MY + G +  A  VF  M  +
Sbjct: 240 ----GLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 295

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           ++ SW+AMI  +A +G A EA+  F  M+ +  ++ PNSVT V +L AC     + +G+ 
Sbjct: 296 DLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQ 355

Query: 312 IHGYILRR-GLDSILPVVSALVTMYARCGKL-ELGQCVFDHMDKRDVVSWNSLISS 365
               ++R   ++  L     +V + AR G + E    V     K D V W SL+ +
Sbjct: 356 YFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDA 411


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/615 (36%), Positives = 355/615 (57%), Gaps = 47/615 (7%)

Query: 53  NELIQSLCKQGNLRQALDVLS-IEPN---PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I S  + G  ++A+D+   + P+   P + T+  +  + +    + +    H     
Sbjct: 146 NSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVV 205

Query: 109 NGFD-QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            G    + F+ + L+++Y+ F  + DAR V D+   + + ++ AL    +  G   E L+
Sbjct: 206 LGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQ 265

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           ++R M  T  GI ++ +T + VL  C         L  G+ IH  +++ G          
Sbjct: 266 VFRNM--TKKGIEANEYTLSSVLVCC----GNLEDLTSGRLIHGLIVKAG---------- 309

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
                                 +++ V+W+++I    +NG    AL  FR+M+  S  + 
Sbjct: 310 ----------------------LESAVTWTSVIVGLVQNGREEIALLKFRQMLRSS--IT 345

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           PNS T+ SVL+AC++LA LEQGK IH  +++ GLD    V +AL+  Y +CG  E+ + V
Sbjct: 346 PNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSV 405

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F+ + + DVVS NS+I SY  +G+G +A+Q+F  M   G+ P+ ++++ VL AC++AGL+
Sbjct: 406 FNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLL 465

Query: 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467
           EEG  +F S R    I  + +HYACMVDLLGRA +L+EA  +I  + I     +W +LL 
Sbjct: 466 EEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNISD-VVIWRTLLS 524

Query: 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKV 527
           +CRIH +VE+A+R   R+ +L P + G +VLL+++YA+   W +V  +K  +    L+K 
Sbjct: 525 ACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKN 584

Query: 528 PGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK 587
           P  S ++V+R++++F++ D  HP F  +   L  L  ++KE GYVP T+ VL DLD E+K
Sbjct: 585 PAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKK 644

Query: 588 ERIVLGHSEKLAVAFGLINTS-KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
            R +  HSEKLAVAF L  ++ K  TIRI KNLR+C DCH++ KF+SK   ++I+ RDV 
Sbjct: 645 IRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVK 704

Query: 647 RFHHFRNGVCSCGDY 661
           RFHHFRNG+CSCGDY
Sbjct: 705 RFHHFRNGLCSCGDY 719



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 147/552 (26%), Positives = 229/552 (41%), Gaps = 105/552 (19%)

Query: 83  YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142
           Y  L+  C    S++D   + SH    GF     L  KLI+ Y    SV  AR VFD+  
Sbjct: 81  YSSLIQQCIGIKSITDITKIQSHALKRGFHHS--LGNKLIDAYLKCGSVVYARKVFDEVP 138

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
            R I  WN++  +    GR +E +++Y+RM     GI  D FT++ V KA         L
Sbjct: 139 HRHIVAWNSMIASYIRNGRSKEAIDIYQRM--VPDGILPDEFTFSSVFKAF----SDLGL 192

Query: 203 LKHGKEIHAS--VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
           +  G+  H    VL  G +  V + + L+DMYA+FG +  A  V  Q+  K+VV ++A+I
Sbjct: 193 VHEGQRAHGQSVVLGVGVSN-VFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALI 251

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             Y+ +G   E+L++FR M  +  +   N  T+ SVL  C  L  L  G++IHG I++ G
Sbjct: 252 VGYSHHGEDGESLQVFRNMTKKGIE--ANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAG 309

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           L+S                                 V+W S+I     +G    A+  F+
Sbjct: 310 LES--------------------------------AVTWTSVIVGLVQNGREEIALLKFR 337

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY--ACMVDLLG 438
           +M+   ++P+  +  SVL ACS   ++E+GK +   + K  +    ++ Y  A ++D  G
Sbjct: 338 QMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGL---DIDKYVGAALIDFYG 394

Query: 439 RANKLEEAAKI----------------------------------IEDLRIEPGPKVWGS 464
           +    E A  +                                  ++D  +EP    W  
Sbjct: 395 KCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLG 454

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           +L +C    N  L E     +F     N+GN  L  D YA   M D + R  RL EA  L
Sbjct: 455 VLSACN---NAGLLEEGC-HIFS-SARNSGNIELTKDHYAC--MVDLLGRAGRLKEAEML 507

Query: 525 QKVPGRSRIEVKRKMYS--------------FVSVDEFHPQFEQLHALLINLSAEMKEKG 570
                 S + + R + S                 V +  P+    H LL NL A      
Sbjct: 508 INQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWS 567

Query: 571 YVPQTKVVLYDL 582
            V + K  + ++
Sbjct: 568 KVIEMKSAMREM 579


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/552 (39%), Positives = 323/552 (58%), Gaps = 13/552 (2%)

Query: 53  NELIQSLCKQGNLRQALD----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I      G  R  L+    +L++  +    T   +L++C +  +L+    +H++   
Sbjct: 228 NSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVK 287

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF         L+++YS   +++ A  VF K    TI  W ++  A    G   E + L
Sbjct: 288 AGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGL 347

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M   G  +R D +  T V+ AC  S+     L  G+E+H  + ++     + +   L
Sbjct: 348 FDEMQSKG--LRPDIYAVTSVVHACACSNS----LDKGREVHNHIKKNNMGSNLPVSNAL 401

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           ++MYA+ G +  A  +FSQ+ VKN+VSW+ MI  Y++N +  EAL+LF +M      L P
Sbjct: 402 MNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDM---QKQLKP 458

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + VTM  VL ACA LAALE+G+ IHG+ILR+G  S L V  ALV MY +CG L L Q +F
Sbjct: 459 DDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLF 518

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D + K+D++ W  +I+ YG+HG+G +AI  F++M   G+ P   SF S+L AC+H+GL++
Sbjct: 519 DMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLK 578

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG  LF+SM+ E  I P +EHYACMVDLL R+  L  A K IE + I+P   +WG+LL  
Sbjct: 579 EGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSG 638

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CRIH +VELAE+ ++ +FELEP N   YVLLA+VYA A+ W+EVK+++R +   GL+   
Sbjct: 639 CRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQ 698

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S IEV+ K   F + D  HPQ + + +LL  L+ +M   GY  + K  L + D   KE
Sbjct: 699 GCSWIEVQGKFNIFFAGDTSHPQAKMIDSLLRKLTMKMNRGGYSNKIKYALINADDRLKE 758

Query: 589 RIVLGHSEKLAV 600
            ++  HSEKLA+
Sbjct: 759 VLLCAHSEKLAM 770



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 220/434 (50%), Gaps = 12/434 (2%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQ--HTYELLLLSCTHH 93
           VS   S T  +  + +KN  I   C+ G+LR A+ +LS         +TY  +L  C   
Sbjct: 11  VSATLSETTHNNVTVDKNAKICKFCEMGDLRNAMKLLSRSQRSELELNTYCSVLQLCAEL 70

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
            SL D   VHS ++ NG   D  L  KL+ +Y +   +   R +FD      I++WN L 
Sbjct: 71  KSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLM 130

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                 G   E + L+ +M     GIR D +T+T VLK   AS    + ++  K +H  V
Sbjct: 131 SEYAKIGNYRESVGLFEKMQ--ELGIRGDSYTFTCVLKGFAAS----AKVRECKRVHGYV 184

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           L+ G+     ++ +LI  Y + G V  A  +F +++ ++VVSW++MI+    NG +   L
Sbjct: 185 LKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGL 244

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
           E F +M+    D+  +S T+V+VL ACA +  L  G+ +H Y ++ G    +   + L+ 
Sbjct: 245 EFFIQMLNLGVDV--DSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLD 302

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MY++CG L     VF  M +  +VSW S+I+++   G   +AI +F EM   G+ P   +
Sbjct: 303 MYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYA 362

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
             SV+ AC+ +  +++G+ +   ++K +M   ++     ++++  +   +EEA  I   L
Sbjct: 363 VTSVVHACACSNSLDKGREVHNHIKKNNM-GSNLPVSNALMNMYAKCGSMEEANLIFSQL 421

Query: 454 RIEPGPKVWGSLLG 467
            ++     W +++G
Sbjct: 422 PVK-NIVSWNTMIG 434


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/578 (36%), Positives = 340/578 (58%), Gaps = 9/578 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +L +C+    L +   +H  +  +  + D  + T L+++Y+    +D A  +FD+   ++
Sbjct: 233 ILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKS 292

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           I  WNA+    +L  +  E     R+M   G  +  D  T   +L  C         +  
Sbjct: 293 IVAWNAMIGGYSLNAQSFESFAYVRKMQ-EGGKLHPDWITMINLLPPCAQ----LEAILL 347

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK +H   +R+G+   + + T L+DMY   G +  A  +F QM  +N++SW+AMIA Y +
Sbjct: 348 GKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTK 407

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           NG   +A+ LF+++  ++  L P++ T+ S+L A A LA+L + + IHGY+ +  LDS  
Sbjct: 408 NGENRKAMTLFQDLCNKT--LKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNT 465

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +++V MY +CG L   + +FD M  +DV+SWN++I +Y +HG+G  +I++F EM   
Sbjct: 466 FVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREK 525

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G  P+  +FVS+L +CS AGLV EG   F SM++++ I P +EHY C++DL+GR   L+ 
Sbjct: 526 GFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDH 585

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A   IE++ + P  ++WGSLL + R   +VELAE A++ +  LE  N G YVLL+++YA 
Sbjct: 586 AKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAE 645

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
           A  W++V+R+K  ++  GL+K  G S +++  K + FV+ D    +   ++ +L  +S +
Sbjct: 646 AGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLDIISKK 705

Query: 566 MKEKGYVPQ-TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCED 624
           + E  YV   TK    DL+ +++      HS +LA+ FGLI+T+ G  + + KN+R+CE 
Sbjct: 706 IGEDVYVHSLTKFRPSDLE-KKRANSAKSHSLRLAICFGLISTTIGNPVLVRKNIRICEA 764

Query: 625 CHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           CH F K IS+   +EI+VRD   FHHF  G CSCGDYW
Sbjct: 765 CHRFAKRISETTKREIIVRDSKIFHHFNGGHCSCGDYW 802



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 229/443 (51%), Gaps = 18/443 (4%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           TY  ++ +C     L++   VH  +  +G D D ++   LI +Y+    ++ A  VF + 
Sbjct: 128 TYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREM 187

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
             R +  WN++       G G   L  +R M    +GI+ DRF+   +L AC  S  GF 
Sbjct: 188 PVRDLVSWNSMISGYVSVGDGWRSLSCFREMQ--ASGIKLDRFSVIGILGAC--SLEGF- 242

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L++GKEIH  ++R      V + T+L+DMYA+ G + YA  +F Q+  K++V+W+AMI 
Sbjct: 243 -LRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIG 301

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            Y+ N  +FE+    R+M  E   L P+ +TM+++L  CA L A+  GK +HG+ +R G 
Sbjct: 302 GYSLNAQSFESFAYVRKM-QEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGF 360

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
              L + +ALV MY  CGKL+  +C+F  M++R+++SWN++I+SY  +G   KA+ +F++
Sbjct: 361 LPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQD 420

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           +    + P   +  S+L A +    + E + +   + K  +   +    + +V + G+  
Sbjct: 421 LCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNS-IVFMYGKCG 479

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH----CNVELAERASKRLFELEPTNAGNYV 497
            L  A +I + +  +     W +++ +  IH     ++EL     ++ F  EP  +    
Sbjct: 480 NLLRAREIFDRMTFKDVIS-WNTVIMAYAIHGFGRISIELFSEMREKGF--EPNGSTFVS 536

Query: 498 LLADVYAAA---DMWDEVKRVKR 517
           LL     A    + W+    +KR
Sbjct: 537 LLLSCSVAGLVNEGWEYFNSMKR 559



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 185/352 (52%), Gaps = 11/352 (3%)

Query: 118 VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177
           +T+ ++ Y     + +A  +F+  R+   ++WN + R     G   + ++ Y RM   G 
Sbjct: 63  LTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGG- 121

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
            +R D FTY +V+KAC     G   L  G+ +H  V++ G +  ++I  +LI MYA+ GC
Sbjct: 122 -VRGDNFTYPFVIKAC----GGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGC 176

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           +  A  VF +M V+++VSW++MI+ Y   G  + +L  FRE  M++  +  +  +++ +L
Sbjct: 177 IESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFRE--MQASGIKLDRFSVIGIL 234

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            AC+    L  GK IH  ++R  L+  + V ++LV MYA+CG+++  + +FD +  + +V
Sbjct: 235 GACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIV 294

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           +WN++I  Y ++    ++    ++M   G + P  I+ +++L  C+    +  GK +   
Sbjct: 295 AWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGF 354

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
             +   + P +     +VD+ G   KL+ A  +   +  E     W +++ S
Sbjct: 355 AIRNGFL-PHLVLETALVDMYGECGKLKPAECLFGQMN-ERNLISWNAMIAS 404



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 18/242 (7%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I S  K G  R+A+    D+ +    P   T   +L +     SL +A  +H ++T 
Sbjct: 399 NAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTK 458

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              D + F+   ++ +Y    ++  AR +FD+   + +  WN +  A  + G G   +EL
Sbjct: 459 LKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIEL 518

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN---GIVHIM 225
           +  M     G   +  T+  +L +C  +     L+  G E   S+ R  YN   GI H  
Sbjct: 519 FSEMR--EKGFEPNGSTFVSLLLSCSVA----GLVNEGWEYFNSMKRD-YNINPGIEH-Y 570

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMIACYARNGMAFEALELFREMIME-S 283
             ++D+  R G + +A     +M +      W +++   +RN    E  E+  E I+   
Sbjct: 571 GCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTA-SRNKGDVELAEIAAEHILSLE 629

Query: 284 HD 285
           HD
Sbjct: 630 HD 631


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/613 (35%), Positives = 350/613 (57%), Gaps = 14/613 (2%)

Query: 51  NKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +K E+++ L   G  R  + + S  PN  ++ + ++L  C     + +    H +L  +G
Sbjct: 104 HKGEVLEVL---GLFRNLVSLDSAYPN--EYIFTIVLSCCADSGRVKEGKQCHGYLLKSG 158

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
                ++   LI++YS    VD A  + D      ++ +N++  AL  +G   E  ++ +
Sbjct: 159 LLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLK 218

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           RM      +  D  TY  VL  C         L+ G +IHA +L+ G    V + +TLID
Sbjct: 219 RM--VDECVIWDSVTYVSVLGLCAQ----IRDLQLGLQIHAQLLKTGLVFDVFVSSTLID 272

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
            Y + G V+ A   F  +  +NVV+W+A++  Y +NG   E L LF +M +E  D  PN 
Sbjct: 273 TYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELE--DTRPNE 330

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
            T   +L ACA+L AL  G ++HG I+  G  + L V +AL+ MY++ G ++    VF +
Sbjct: 331 FTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSN 390

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M  RDV++WN++I  Y  HG G +A+ +F++M+  G  P+ ++F+ VL AC H  LV+EG
Sbjct: 391 MMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEG 450

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSC 469
              F+ + K+  + P +EHY CMV LLGRA  L+EA   ++   +++     W +LL +C
Sbjct: 451 FYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNAC 510

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
            IH N  L ++ ++ + +++P + G Y LL++++A A  WD V ++++L++ R ++K PG
Sbjct: 511 HIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKEPG 570

Query: 530 RSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKER 589
            S ++++   + FVS    HP+  Q+   +  L A +K  GY P   VVL+D++ E+KE 
Sbjct: 571 ASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVEDEQKEG 630

Query: 590 IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
            +  HSEKLA+A+GL+       IRI KNLR+C+DCH   K ISK  N+ I+VRD NRFH
Sbjct: 631 YLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRDANRFH 690

Query: 650 HFRNGVCSCGDYW 662
           HFR G+C+C D+W
Sbjct: 691 HFREGLCTCNDHW 703



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 163/341 (47%), Gaps = 11/341 (3%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHL---TDNGFDQDPFLVTKLINVYSHFDSVD 132
           P   +    LL  S T   SL     +H+ L        D D   +  LIN+YS      
Sbjct: 20  PCSLKEVVNLLKFSATA-KSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSK 78

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
            AR +FD+  +R +  W+AL       G   EVL L+R +    +    + + +T VL  
Sbjct: 79  CARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAY-PNEYIFTIVLSC 137

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
           C  S      +K GK+ H  +L+ G     ++   LI MY+R   V  A  +   +   +
Sbjct: 138 CADS----GRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDD 193

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           V S++++++    +G   EA ++ + M+ E   +  +SVT VSVL  CA +  L+ G  I
Sbjct: 194 VFSYNSILSALVESGCRGEAAQVLKRMVDEC--VIWDSVTYVSVLGLCAQIRDLQLGLQI 251

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           H  +L+ GL   + V S L+  Y +CG++   +  FD +  R+VV+W +++++Y  +G+ 
Sbjct: 252 HAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHF 311

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
            + + +F +M      P+  +F  +L AC+    +  G +L
Sbjct: 312 EETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLL 352



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 132/255 (51%), Gaps = 5/255 (1%)

Query: 203 LKHGKEIHASVL---RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
           L+ GK IHA ++   +   +  +  + +LI++Y++ G    A  +F +M  +NVVSWSA+
Sbjct: 39  LRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSAL 98

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           +  Y   G   E L LFR ++       PN      VL  CA    +++GK  HGY+L+ 
Sbjct: 99  MMGYLHKGEVLEVLGLFRNLV-SLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKS 157

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           GL     V +AL+ MY+RC  ++    + D +   DV S+NS++S+    G  G+A Q+ 
Sbjct: 158 GLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVL 217

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           K M+   V    +++VSVLG C+    ++ G  +   + K  ++   V   + ++D  G+
Sbjct: 218 KRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVF-DVFVSSTLIDTYGK 276

Query: 440 ANKLEEAAKIIEDLR 454
             ++  A K  + LR
Sbjct: 277 CGEVLNARKQFDGLR 291



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 92/174 (52%), Gaps = 8/174 (4%)

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGL---DSILPVVSALVTMYARCGKLELGQCVFD 349
           +V++L+  A   +L  GK IH  ++ R     DS +  +++L+ +Y++CG+ +  + +FD
Sbjct: 26  VVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFD 85

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSHAGLVE 408
            M +R+VVSW++L+  Y   G   + + +F+ ++      P+   F  VL  C+ +G V+
Sbjct: 86  RMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVK 145

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
           EGK     + K  ++       A ++ +  R   ++ A +I++ +   PG  V+
Sbjct: 146 EGKQCHGYLLKSGLLLHQYVKNA-LIHMYSRCFHVDSAMQILDTV---PGDDVF 195


>gi|302776458|ref|XP_002971391.1| hypothetical protein SELMODRAFT_95540 [Selaginella moellendorffii]
 gi|300160523|gb|EFJ27140.1| hypothetical protein SELMODRAFT_95540 [Selaginella moellendorffii]
          Length = 598

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/583 (37%), Positives = 339/583 (58%), Gaps = 13/583 (2%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
             Y  LL  C +  +L D   VH HL   G++ + FL   L+ +Y    S+DDA   FD 
Sbjct: 28  EAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKCSSIDDAALAFDS 87

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
            R++ ++ WN +  A    G  +  + ++  M      I+ +R T+  VL A +      
Sbjct: 88  IRKKDLFSWNIMIAAFAENGCLDRAVGVFELMEPAR--IKRNRGTFVAVLAAGLD----- 140

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             L+ GK+IH SV   G      + T L+ MY   G    A  VF Q+   ++V W+AMI
Sbjct: 141 --LEQGKKIHDSVHSSGLERNEMVATALLSMYGACGSTDDARQVFEQVPKLDLVCWNAMI 198

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             Y +N    EALE+F  + ME   +  N VT ++ L ACA LA   +G+ +H  +   G
Sbjct: 199 TAYVQNDRGREALEIFHRLEMEG--VKCNEVTYLAALDACACLAVQSEGRSLHKRVSEAG 256

Query: 321 LD-SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           L  +   V ++L+ MY + G LE  + +F+ M  RD+ SWN L++ YG +G G  A+  F
Sbjct: 257 LLLTSFKVANSLINMYGKSGNLEAAEEIFESMPSRDISSWNVLLTVYGHNGLGDLAVDRF 316

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
            E    G  P  I+F++VL ACSHAGL++ G  L  S++++  I P+  HY C+VDLLGR
Sbjct: 317 TESCLEGFEPDSITFLAVLQACSHAGLLDTGVELLVSIQEDWGIDPTQYHYLCVVDLLGR 376

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           + +L  A  +I  +  EP    W SLLG CR++ +V   ERA++RL  +   ++  YVL+
Sbjct: 377 SGELVRAEALINSMPFEPEEGAWRSLLGGCRVNSDVGRGERATQRLLVM-SEDSSPYVLM 435

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           A++YA+   +D  +R++ ++  R ++K PG S IEV+ ++++F + D+ H + E+++A L
Sbjct: 436 ANIYASIRNFDLAERLRSVMADRNVKKQPGLSWIEVRGRIHTFAANDKLHARKEEIYAGL 495

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
             L  E++ +GY P T+V LYD++ E+K R++L HSEKLA+ FGL++T  G  + + KNL
Sbjct: 496 DRLFVELQREGYRPDTRVALYDVEEEKKVRMLLHHSEKLAIMFGLMSTPDGSPLFVLKNL 555

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCH+ TK I+K   ++I++RD +RFHHF NG CSC DYW
Sbjct: 556 RVCADCHAATKIIAKITKRKIVMRDASRFHHFENGKCSCCDYW 598



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 89/169 (52%), Gaps = 6/169 (3%)

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
            C N+    ++L+ CA    L  GK +H ++ R G ++   + + LV MY +C  ++   
Sbjct: 23  FCSNTEAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKCSSIDDAA 82

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
             FD + K+D+ SWN +I+++  +G   +A+ +F+ M    +  +  +FV+VL     AG
Sbjct: 83  LAFDSIRKKDLFSWNIMIAAFAENGCLDRAVGVFELMEPARIKRNRGTFVAVLA----AG 138

Query: 406 L-VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           L +E+GK + +S+    + R  +   A ++ + G     ++A ++ E +
Sbjct: 139 LDLEQGKKIHDSVHSSGLERNEMVATA-LLSMYGACGSTDDARQVFEQV 186


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 239/622 (38%), Positives = 359/622 (57%), Gaps = 26/622 (4%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N  ++ L KQ   R+AL +    L     P   T+  LL SC   +    A  +H+H+  
Sbjct: 23  NNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHVIR 82

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   DP+  + LIN Y+       AR VFD+    TI  +NA+    +   +    + L
Sbjct: 83  TGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNPTI-CYNAMISGYSFNSKPLHAVCL 141

Query: 169 YRRM-----NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           +R+M     +G    +  +  T   ++  C  ++     L  G  +H   +R G+   + 
Sbjct: 142 FRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVAT----HLTIGVCLHGCCVRFGFVTDLA 197

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           +  +L+ MY + G V  A  VF +M V+++++W+AMI+ YA+NG A   LE++ EM +  
Sbjct: 198 VANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSG 257

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
             +  ++VT++ V+ ACA L A   G+ +   I RRG      + +ALV MYARCG L  
Sbjct: 258 --VSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTR 315

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
            + VFD   ++ VVSW ++I  YG+HG+G  A+++F EM+   V P    FVSVL ACSH
Sbjct: 316 AREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSH 375

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
           AGL + G   F+ M +++ ++P  EHY+C+VDLLGRA +LEEA  +I+ ++++P   VWG
Sbjct: 376 AGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWG 435

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           +LLG+C+IH N E+AE A + + ELEPTN G YVLL+++Y  A+  + V RV+ ++  R 
Sbjct: 436 ALLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERK 495

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
           L+K PG S +E K KM  F S D  HPQ +Q++ +L  L + +KE  + P  K       
Sbjct: 496 LRKDPGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELESLVKEV-HPPNEKC------ 548

Query: 584 AEEKERIVLG---HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEI 640
               E +++G   HSEKLA+AF L+NT  G  I + KNLR+C DCH F K +SK  N++ 
Sbjct: 549 QGRSEELLIGTGVHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNRQF 608

Query: 641 LVRDVNRFHHFRNGVCSCGDYW 662
           +VRD  RFHHFR+G+CSC DYW
Sbjct: 609 IVRDATRFHHFRDGICSCKDYW 630



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 140/262 (53%), Gaps = 12/262 (4%)

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           WN   R L+   +  E L LYR M      +RS  F  T+     + S    SL     +
Sbjct: 22  WNNQLRQLSKQRQYREALTLYRHM------LRSSFFPNTFTFPFLLKSCAFLSLPLAASQ 75

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           +HA V+R G     +  ++LI+ YA+     +A  VF +M     + ++AMI+ Y+ N  
Sbjct: 76  LHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMP-NPTICYNAMISGYSFNSK 134

Query: 269 AFEALELFREMIMESH-----DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
              A+ LFR+M  E       D+  N+VT++S++  C+    L  G  +HG  +R G  +
Sbjct: 135 PLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVT 194

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            L V ++LVTMY +CG++EL + VFD M  RD+++WN++IS Y  +G+    ++++ EM 
Sbjct: 195 DLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMK 254

Query: 384 YHGVSPSPISFVSVLGACSHAG 405
             GVS   ++ + V+ AC++ G
Sbjct: 255 LSGVSADAVTLLGVMSACANLG 276


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/542 (36%), Positives = 329/542 (60%), Gaps = 8/542 (1%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LI  Y     ++ AR +FD+   R +  WNA+   LT +G  EE L  +  M   G  ++
Sbjct: 6   LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREG--MQ 63

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D +    + + C     G   +  G+++HA V+R G +  + + ++L  MY R G +  
Sbjct: 64  PDEYGLGSLFRCCA----GLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRD 119

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
                  +   N+VS +  I+   +NG A  ALE F   +M    +  N+VT VS + +C
Sbjct: 120 GEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFF--CLMRGAGVEANAVTFVSAVTSC 177

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           + LAAL QG+ IH   ++ G+D ++PV+++LV MY+RCG L   + V       D+V  +
Sbjct: 178 SDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCS 237

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           ++IS+YG HG+G KA+ +FK+M+  G  P+ ++F+++L ACSH+GL +EG   FE M K 
Sbjct: 238 AMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKT 297

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           + ++PSV+HY C+VDLLGR+  L EA  +I  + ++P   +W +LL +C+     ++AER
Sbjct: 298 YGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAER 357

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
            ++R+ EL+P ++ +YVLL+++ A +  W++V +V+  +  + ++K PG S +E+K +++
Sbjct: 358 IAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIH 417

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
            F + DE H +  ++   L  +   +++ GY P   +V +D++ EEKE  +  HSEKLA+
Sbjct: 418 QFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAI 477

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           AF  ++  +G  IR+ KNLR+C+DCH   K +SK   +EI+VRDV+RFHHF++G CSCGD
Sbjct: 478 AFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGD 537

Query: 661 YW 662
           YW
Sbjct: 538 YW 539



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 133/291 (45%), Gaps = 10/291 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P ++    L   C     +     VH+++  +G D+D  + + L ++Y     + D   
Sbjct: 63  QPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEA 122

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
                    I   N      T  G  E  LE +  M   G G+ ++  T+   + +C   
Sbjct: 123 ALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMR--GAGVEANAVTFVSAVTSCS-- 178

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
               + L  G++IHA  ++ G + +V +MT+L+ MY+R GC+  +  V  + +  ++V  
Sbjct: 179 --DLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLC 236

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           SAMI+ Y  +G   +A+ LF++M+    +  PN VT +++L AC+     ++G      +
Sbjct: 237 SAMISAYGFHGHGQKAVGLFKQMMAAGAE--PNEVTFLTLLYACSHSGLKDEGMNCFELM 294

Query: 317 LRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISS 365
            +  GL   +   + +V +  R G L   + +   M  + D V W +L+S+
Sbjct: 295 TKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSA 345



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 109/255 (42%), Gaps = 28/255 (10%)

Query: 37  SLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSC 90
           SLN  +  T++S R +N         G+   AL+         +E N    T+   + SC
Sbjct: 129 SLNIVSCNTTISGRTQN---------GDAEGALEFFCLMRGAGVEANAV--TFVSAVTSC 177

Query: 91  THHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN 150
           +   +L+    +H+     G D+   ++T L+++YS    + D+  V  +     + + +
Sbjct: 178 SDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCS 237

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
           A+  A    G G++ + L+++M     G   +  T+  +L AC  S     L   G    
Sbjct: 238 AMISAYGFHGHGQKAVGLFKQM--MAAGAEPNEVTFLTLLYACSHS----GLKDEGMNCF 291

Query: 211 ASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-ACYARNG 267
             + + +G    V   T ++D+  R GC+  A  +   M V+ + V W  ++ AC  +  
Sbjct: 292 ELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQK- 350

Query: 268 MAFEALELFREMIME 282
             F+  E   E ++E
Sbjct: 351 -KFDMAERIAERVIE 364


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/587 (37%), Positives = 342/587 (58%), Gaps = 22/587 (3%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDKTRR 143
           LL  C   NS+     +H+H+  NG+  +P +  KL+N    S   S+  A+ VF +   
Sbjct: 29  LLQGC---NSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHN 85

Query: 144 RTIYVWNALFRALTLAGRGEEV--LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
                WN++ R  + +    ++  +  Y  M  + +  R D +T++++LKAC  +     
Sbjct: 86  PQTPAWNSMIRGFSQSPSPLQLQAIVFYNHML-SASHARPDTYTFSFLLKACEEAK---- 140

Query: 202 LLKHGK--EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
             + GK  E+H  ++R GY+  V + T LI  YA  G +  A  VF +M  +++VSW++M
Sbjct: 141 --EEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSM 198

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I+CY + G+  EAL+++ +M +   ++  +  T+VS+L +CA + AL  G  +H +   R
Sbjct: 199 ISCYCQTGLHEEALKMYDQMRIS--NVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGER 256

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
            L   + V +AL+ MYA+CG L     +F+ M KRDV +WNS+I  YGVHG G +AI  F
Sbjct: 257 RLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFF 316

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
             M+  GV P+ I+F+ +L  CSH GLV+EG   F  M  E  ++P ++HY CMVDL GR
Sbjct: 317 GSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGR 376

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           A KL+EA ++I     +  P +W +LLGSC+IH NVE+ E A + L +L    AG+ VLL
Sbjct: 377 AGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLL 436

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           + +YA A     V R+++L+++RG++  PG S IEV  +++ FV  D+ HP   +++  L
Sbjct: 437 SGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKL 496

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERI----VLGHSEKLAVAFGLINTSKGETIRI 615
             +       GY  +   ++   ++  +E         HSEKLA+A+GL  T +G ++ I
Sbjct: 497 EEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLI 556

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C DCH+FTKF+S   ++EI+VRD  RFHHF+ G CSC ++W
Sbjct: 557 VKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 22/300 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL +C           VH  +   G+DQD  L T LI  Y+    ++ A  V
Sbjct: 124 PDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKV 183

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++   R +  WN++       G  EE L++Y +M  +  G   D FT   +L +C    
Sbjct: 184 FEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGF--DGFTLVSLLSSCA--- 238

Query: 198 CGFSLLKHGKEIHASVLRHGYNG------IVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
                  H   +H  V  H + G       + +   LIDMYA+ G +  A  +F+ M  +
Sbjct: 239 -------HVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKR 291

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-K 310
           +V +W++MI  Y  +G   EA+  F  M+M    + PNS+T + +L  C+    +++G +
Sbjct: 292 DVFTWNSMIVGYGVHGRGDEAITFFGSMLMAG--VRPNSITFLGLLCGCSHQGLVKEGVQ 349

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKL-ELGQCVFDHMDKRDVVSWNSLISSYGVH 369
             H       L   +     +V ++ R GKL E  + +     + D V W +L+ S  +H
Sbjct: 350 YFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIH 409


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/556 (38%), Positives = 318/556 (57%), Gaps = 42/556 (7%)

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
           R  T+   N+L RAL    R       +R +      +  D +++T++++A  A +   +
Sbjct: 158 RPATLLAHNSLLRALARGRRPHLAFGAFRDLP-----LAPDNYSFTFLVRAATALAAAAA 212

Query: 202 LLKHGK----EIHASVLRHGYNGIVHIMTTLIDMYARFG------------------CVM 239
                      +HAS LRHG+ G  H+ +  + MYA  G                  CV 
Sbjct: 213 SALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVT 272

Query: 240 -------------YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
                         A  +F  M  ++ V+W+AMIA Y   G + EAL LF EM      +
Sbjct: 273 AMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAV 332

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
               VT+VS L ACA L ALE+GK +H     RG+   + + +AL+ MY++CG +     
Sbjct: 333 --GEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAME 390

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VFD M +R+V +W S +S   ++G G   + +FK M   GV P+ ++FV VL  CS AGL
Sbjct: 391 VFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGL 450

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V+EG+  F+SM+  H I P +EHY CMVDL GRA +L++A   I  + +EP   VWG+LL
Sbjct: 451 VDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALL 510

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            + RIH NVEL + A  +L  +E  N   +VLL+++YA +  W  V  V+ +++A+G++K
Sbjct: 511 NASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKK 570

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
           VPG S IEV  K++ F    + HP+ +++  +L  ++  ++ +GY+  TK VL+D++ E+
Sbjct: 571 VPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEED 630

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE  +  HSEKLA+AFGL+   +   IRI KNLR+CEDCH +TK ISK  N+EI++RD N
Sbjct: 631 KEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRN 690

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF++G CSC DYW
Sbjct: 691 RFHHFKDGACSCKDYW 706



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 119/259 (45%), Gaps = 12/259 (4%)

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           D   VT ++   +     D AR +FD   +R    WNA+       GR  E L L+  M 
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
             G  +     T    L AC         L+ GK +H+     G    V + T LIDMY+
Sbjct: 327 HAGAAV--GEVTLVSALTACAQ----LGALERGKWVHSCAHSRGMRLSVTLGTALIDMYS 380

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G V  A  VF  M  +NV +W++ ++  A NGM  + L LF+   MES  + PN VT 
Sbjct: 381 KCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKR--MESTGVEPNGVTF 438

Query: 294 VSVLQACAALAALEQGKMIHGYIL-RRGLDSILPVVSALVTMYARCGKLELGQCVFDHM- 351
           V VL+ C+    +++G+     +    G+D  L     +V +Y R G+L+      + M 
Sbjct: 439 VVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMP 498

Query: 352 -DKRDVVSWNSLISSYGVH 369
            +  + V W +L+++  +H
Sbjct: 499 LEPHEGV-WGALLNASRIH 516



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 11/189 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHLTD 108
           N +I      G  R+AL +     +      E+ L+S    C    +L     VHS    
Sbjct: 303 NAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHS 362

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G      L T LI++YS   +V  A  VFD    R +Y W +    L + G G + L L
Sbjct: 363 RGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLAL 422

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL-RHGYNGIVHIMTT 227
           ++RM    TG+  +  T+  VL+ C  +     L+  G+    S+   HG +  +     
Sbjct: 423 FKRME--STGVEPNGVTFVVVLRGCSMA----GLVDEGRACFDSMKSNHGIDPWLEHYGC 476

Query: 228 LIDMYARFG 236
           ++D+Y R G
Sbjct: 477 MVDLYGRAG 485


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/616 (36%), Positives = 339/616 (55%), Gaps = 51/616 (8%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LL  C    S S A  +H+       DQD  +  +L   Y+    +D A  +  +T   T
Sbjct: 30  LLAGCA---SASRAAEIHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPT 86

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
              + +   A +  G     L L   M  +  G+     T +  L AC         L  
Sbjct: 87  AVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPAC-------GCLAV 139

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMY--------------------------------A 233
           G+ +H   ++   +G  ++ T L+ MY                                A
Sbjct: 140 GRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYA 199

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G +  A  +F  +  K++V W+AM+  Y ++G   EAL LFR+M+    +  P+ V++
Sbjct: 200 KMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVE--PDEVSV 257

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILP----VVSALVTMYARCGKLELGQCVFD 349
           V  L A A L   E G+ +H ++   G  + +     V +ALV MY +CG LE    VF 
Sbjct: 258 VLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFR 317

Query: 350 HMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
            +     RDVV+WN++I+ Y +HG   +A++ F ++   G+ P+ I+F+ VL ACSH+GL
Sbjct: 318 DLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGL 377

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V+EG+ LF +M +E+ I P VEHY CMVDLLGRA ++EEA  +++ ++ +P   +W SLL
Sbjct: 378 VDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLL 437

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+CR+H N+ L +R +  L      N+G YVLL+++YAAA  W EV RV+ ++ A G+QK
Sbjct: 438 GACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQK 497

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S +EV R++  FV+ D  HP+  +++A L  +++  + +G+VP T++VL+DLD   
Sbjct: 498 EPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAA 557

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KER +  HSEKLA+AFGLI+T     I+I KNLR C DCH+  K +S+   ++I+ RD N
Sbjct: 558 KERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRN 617

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF +G CSCGDYW
Sbjct: 618 RFHHFVDGSCSCGDYW 633


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/644 (34%), Positives = 342/644 (53%), Gaps = 42/644 (6%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF- 111
           N L+ + CK G L  A  V    P+    TY  +++ C+   S ++AL++ + +   G  
Sbjct: 179 NTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLA 238

Query: 112 ---------------------------------DQDPFLVTKLINVYSHFDSVDDARHVF 138
                                              + F+   L++ YS  D +D+ + +F
Sbjct: 239 ATRFTFSTVLTVATGVGDLCLGRQVHGLVARATSSNVFVNNSLLDFYSKCDCLDEMKKLF 298

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
            +   R    +N +            VL L+R M      +  DR    Y     VA S 
Sbjct: 299 HEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQS----LSFDRQALPYASLLSVAGSV 354

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
               +  GK+IHA ++  G +    +   LIDMY++ G +  A   F     K  VSW+A
Sbjct: 355 PH--IGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTA 412

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           MI    +NG   EAL+LF    M    L P+  T  S ++A + LA +  G+ +H Y++R
Sbjct: 413 MITGCVQNGQQEEALQLF--CGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIR 470

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
            G  S +   SAL+ MY +CG L+     FD M +R+ +SWN++IS+Y  +G    AI++
Sbjct: 471 SGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKM 530

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
           F+ M+ +G  P  ++F+SVL ACSH GL EE    FE M  E+ I P  EHY+C++D LG
Sbjct: 531 FEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLG 590

Query: 439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVL 498
           R  + ++  +++ ++  E  P +W S+L SCR H N +LA  A+++LF +  T+A  YV+
Sbjct: 591 RVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVI 650

Query: 499 LADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHAL 558
           L++++A A  W++   VK+++  RGL+K  G S +EVK K+YSF S D+ +P   ++   
Sbjct: 651 LSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDE 710

Query: 559 LINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKN 618
           L  L  EM ++GY P T   L  +D + K   +  HSE+LA+AF LINT  G  IR+ KN
Sbjct: 711 LERLYKEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSERLAIAFALINTPPGTPIRVMKN 770

Query: 619 LRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           L  C DCHS  K +SK  N++I+VRD +RFHHF++G CSCGDYW
Sbjct: 771 LSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGDYW 814



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 177/408 (43%), Gaps = 36/408 (8%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP-----FLVTKLINVYSHFDSV 131
           +P  +   LLL S      L+ A  +        FDQ P     F + ++++ YS    +
Sbjct: 31  DPATYRLNLLLHSLISSGRLAQARAL--------FDQMPHRNNAFSLNRMLSGYSRSGQL 82

Query: 132 DDARHVF--DKTRRRTIYVWNALFRALTLA--GRGEEVLELYRRMNGTGTGIRSDRFTYT 187
             A H+F       R    W  +  A   A   R  + + L+R M     G+  DR T  
Sbjct: 83  SAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDM--LREGVAPDRVTVA 140

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFGCVMYAGFVFS 246
            VL    AS  G +       +H   L+ G  +  V +  TL+D Y + G +  A  VF 
Sbjct: 141 TVLNLPPASG-GTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQ 199

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306
           +M  ++ V+++AM+   ++ G   EAL+LF    M    L     T  +VL     +  L
Sbjct: 200 EMPHRDSVTYNAMMMGCSKEGSHAEALDLFAA--MRRKGLAATRFTFSTVLTVATGVGDL 257

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
             G+ +HG + R    ++  V ++L+  Y++C  L+  + +F  M +RD VS+N +I+ Y
Sbjct: 258 CLGRQVHGLVARATSSNVF-VNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGY 316

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPI---SFVSVLGACSHAGLVEE--GKMLFESMRKEH 421
             +      +++F+EM         +   S +SV G+  H G+ ++   +++   +  E 
Sbjct: 317 AWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSED 376

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           ++  +      ++D+  +   L+ A     +   + G   W +++  C
Sbjct: 377 LVGNA------LIDMYSKCGMLDAAKTNFINKNDKTGVS-WTAMITGC 417


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/590 (35%), Positives = 338/590 (57%), Gaps = 52/590 (8%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + TY  +L S     S    + +H  +   G + D F+   L+++Y   + +  A  V
Sbjct: 177 PDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKV 236

Query: 138 FDKTRRR-----TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           FD++  R     +  +WN L +    AG  ++ ++L++ M       + +  +++     
Sbjct: 237 FDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMP------KKENVSWS----- 285

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
                                             TLID +A+ G +  A  +F QM  KN
Sbjct: 286 ----------------------------------TLIDGFAKNGDMDRAMELFDQMPEKN 311

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           VVSW+ M+  ++RNG + +AL +F +M+ E   + PN+ T+VS L ACA +  LE G  I
Sbjct: 312 VVSWTTMVDGFSRNGDSEKALSMFSKMLEEG--VRPNAFTIVSALSACAKIGGLEAGLRI 369

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           H YI   GL     + +ALV MYA+CG +E    VF   +++ + +W  +I  + +HG+ 
Sbjct: 370 HKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHS 429

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432
            +AI  FK+M++ G+ P  + F+++L AC H+G V+ G   F+SMR ++ I PS++HY  
Sbjct: 430 EQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTL 489

Query: 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
           +VD+LGR+ +L+EA + IE + + P   +WG+L  +CR H   ++A+ A  +L +LEPT+
Sbjct: 490 IVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTH 549

Query: 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQF 552
            GNY+ L++ YAA   W++ +RV+ L++ RG+ K  G S IEV+ +++ FVS D  H   
Sbjct: 550 TGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDS 609

Query: 553 EQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET 612
           + +   L  + A   ++GY+P T+ VL++++ EEKE ++  H EKLA+AF LI TS G T
Sbjct: 610 KAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMT 669

Query: 613 IRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IRI KNL++C DCHS  K+ SK + +EI++RD+ RFHHF++G CSC D+W
Sbjct: 670 IRIVKNLQVCGDCHSLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 28/310 (9%)

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
           +IHA ++ H  +    I T LI   +    + ++  VF+    KN+ +++A+I     N 
Sbjct: 99  QIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNS 158

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG--LDSIL 325
             F A+  FR M+     + P+ +T   VL++ A L + E G  IH  ILR G  LDS +
Sbjct: 159 HFFNAIFHFRLMLRSG--IKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFV 216

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKR-----DVVSWNSLISSYGVHGYGGKAIQIFK 380
            V  +LV MY +  KL     VFD   +R       + WN LI      G   KA+++FK
Sbjct: 217 RV--SLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFK 274

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
            M         +S+ +++   +  G ++    LF+ M +++++      +  MVD   R 
Sbjct: 275 AM----PKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVS-----WTTMVDGFSRN 325

Query: 441 NKLEEA----AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE--LEPTNAG 494
              E+A    +K++E+  + P      S L +C     +E   R  K + +  L  T A 
Sbjct: 326 GDSEKALSMFSKMLEE-GVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEAL 384

Query: 495 NYVLLADVYA 504
              L+ D+YA
Sbjct: 385 GTALV-DMYA 393



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 114/276 (41%), Gaps = 21/276 (7%)

Query: 55  LIQSLCKQGNLRQALDVLS--IEPN--PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           ++    + G+  +AL + S  +E    P   T    L +C     L   L +H ++ DNG
Sbjct: 318 MVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNG 377

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
                 L T L+++Y+   +++ A  VF +T +++I  W  +     + G  E+ +  ++
Sbjct: 378 LHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFK 437

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVAS---SCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           +M     GI+ D   +  +L AC+ S     G +     +      L +     +   T 
Sbjct: 438 QM--MFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMR------LDYCIEPSMKHYTL 489

Query: 228 LIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-ACYARNGMAFEALELFREMIMESHD 285
           ++DM  R G +  A     +M +  + V W A+  AC A          L + + +E   
Sbjct: 490 IVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEP-- 547

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
              ++   + +  A AAL   E  + +   +  RG+
Sbjct: 548 --THTGNYIFLSNAYAALGQWEDAERVRVLMQNRGV 581



 Score = 42.4 bits (98), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 23/227 (10%)

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P     +S++     +  L Q   IH  I+   L S   + + L++  +    +     V
Sbjct: 79  PTEAHFISLIHGSKTILQLHQ---IHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAV 135

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F+H   +++ ++N+LI     + +   AI  F+ M+  G+ P  +++  VL   S AGL 
Sbjct: 136 FNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLK--SMAGLF 193

Query: 408 E-EGKMLFESMRKEHMIRPSVEHYA----CMVDLLGRANKLEEAAKIIEDL--RIEPGPK 460
             E  M    M    ++R  +E  +     +VD+  +  KL  A K+ ++   R + G  
Sbjct: 194 STELGMAIHCM----ILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSS 249

Query: 461 --VWGSLLGSCRIHCNVELAERASKRLFELEPTNAG-NYVLLADVYA 504
             +W  L+  C   C     ++A K LF+  P     ++  L D +A
Sbjct: 250 ALLWNVLIKGC---CKAGSMKKAVK-LFKAMPKKENVSWSTLIDGFA 292


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/569 (37%), Positives = 330/569 (57%), Gaps = 19/569 (3%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            +H+     G   D F+     ++YS      +AR++FD+   R +  WNA        G
Sbjct: 130 QLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDG 189

Query: 161 RGEEVLELYRR---MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
           R  + +  +++   ++G    I     T+   L AC         L+ G+++H  ++R  
Sbjct: 190 RCLDAIAAFKKFLCVDGEPNAI-----TFCAFLNACA----DIVSLELGRQLHGFIVRSR 240

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--KNVVSWSAMIACYARNGMAFEALEL 275
           Y   V +   LID Y + G ++ +  VFS++    +NVVSW +++A   +N     A  +
Sbjct: 241 YREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMV 300

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F +   E     P    + SVL ACA L  LE G+ +H   L+  ++  + V SALV +Y
Sbjct: 301 FLQARKEVE---PTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLY 357

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH--GVSPSPIS 393
            +CG +E  + VF  M +R++V+WN++I  Y   G    A+ +F+EM     G++ S ++
Sbjct: 358 GKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVT 417

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            VSVL ACS AG VE G  +FESMR  + I P  EHYAC+VDLLGR+  ++ A + I+ +
Sbjct: 418 LVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRM 477

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
            I P   VWG+LLG+C++H   +L + A+++LFEL+P ++GN+V+ +++ A+A  W+E  
Sbjct: 478 PILPTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEAT 537

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
            V++ +   G++K  G S + VK +++ F + D FH +  ++ A+L  L  EMK+ GYVP
Sbjct: 538 IVRKEMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVP 597

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
              + L+DL+ EEK   V  HSEK+A+AFGLI   +G  IRITKNLR+C DCHS  KFIS
Sbjct: 598 DANLSLFDLEEEEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFIS 657

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K   +EI+VRD NRFH F++G CSC DYW
Sbjct: 658 KIVGREIIVRDNNRFHRFKDGWCSCKDYW 686



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 228/501 (45%), Gaps = 29/501 (5%)

Query: 102 VHSHLTDNGFDQDP-FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           VH+H+        P FL   L+N+YS  D  + A+ V   T  RT+  W +L        
Sbjct: 29  VHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVHNR 88

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
           R    L  +  M      +  + FT+  V KA    S    +   GK++HA  L+ G   
Sbjct: 89  RFTSALLHFSNMRREC--VLPNDFTFPCVFKA----SASLHMPVTGKQLHALALKGGNIL 142

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
            V +  +  DMY++ G    A  +F +M  +N+ +W+A ++   ++G   +A+  F++ +
Sbjct: 143 DVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFL 202

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
               +  PN++T  + L ACA + +LE G+ +HG+I+R      + V + L+  Y +CG 
Sbjct: 203 CVDGE--PNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGD 260

Query: 341 LELGQCVFDHM--DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           +   + VF  +   +R+VVSW SL+++   +    +A  +F +     V P+     SVL
Sbjct: 261 IVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQA-RKEVEPTDFMISSVL 319

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            AC+  G +E G+ +  ++  +  +  ++   + +VDL G+   +E A ++  ++  E  
Sbjct: 320 SACAELGGLELGRSV-HALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMP-ERN 377

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
              W +++G      +V++A    + +       A +YV L  V +A      V+R  ++
Sbjct: 378 LVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQI 437

Query: 519 LEA-RGLQKV-PGR----------SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
            E+ RG   + PG            R  +  + Y F+      P      ALL       
Sbjct: 438 FESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHG 497

Query: 567 KEK-GYVPQTKVVLYDLDAEE 586
           K K G +   K  L++LD ++
Sbjct: 498 KTKLGKIAAEK--LFELDPDD 516



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 6/195 (3%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E  PT      +L +C     L    +VH+       +++ F+ + L+++Y    S++ A
Sbjct: 307 EVEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYA 366

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
             VF +   R +  WNA+       G  +  L L++ M     GI     T   VL AC 
Sbjct: 367 EQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACS 426

Query: 195 ASSCGFSLLKHGKEIHASVL-RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
            +      ++ G +I  S+  R+G          ++D+  R G V  A     +M +   
Sbjct: 427 RAGA----VERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPT 482

Query: 254 VS-WSAMIACYARNG 267
           +S W A++     +G
Sbjct: 483 ISVWGALLGACKMHG 497


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/556 (38%), Positives = 318/556 (57%), Gaps = 42/556 (7%)

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
           R  T+   N+L RAL    R       +R +      +  D +++T++++A  A +   +
Sbjct: 151 RPATLLAHNSLLRALARGRRPHLAFGAFRDLP-----LAPDNYSFTFLVRAATALAAAAA 205

Query: 202 LLKHGK----EIHASVLRHGYNGIVHIMTTLIDMYARFG------------------CVM 239
                      +HAS LRHG+ G  H+ +  + MYA  G                  CV 
Sbjct: 206 SALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVT 265

Query: 240 -------------YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
                         A  +F  M  ++ V+W+AMIA Y   G + EAL LF EM      +
Sbjct: 266 AMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAV 325

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
               VT+VS L ACA L ALE+GK +H     RG+   + + +AL+ MY++CG +     
Sbjct: 326 --GEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAME 383

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VFD M +R+V +W S +S   ++G G   + +FK M   GV P+ ++FV VL  CS AGL
Sbjct: 384 VFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGL 443

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V+EG+  F+SM+  H I P +EHY CMVDL GRA +L++A   I  + +EP   VWG+LL
Sbjct: 444 VDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALL 503

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            + RIH NVEL + A  +L  +E  N   +VLL+++YA +  W  V  V+ +++A+G++K
Sbjct: 504 NASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKK 563

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
           VPG S IEV  K++ F    + HP+ +++  +L  ++  ++ +GY+  TK VL+D++ E+
Sbjct: 564 VPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEED 623

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE  +  HSEKLA+AFGL+   +   IRI KNLR+CEDCH +TK ISK  N+EI++RD N
Sbjct: 624 KEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRN 683

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF++G CSC DYW
Sbjct: 684 RFHHFKDGACSCKDYW 699



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 119/259 (45%), Gaps = 12/259 (4%)

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           D   VT ++   +     D AR +FD   +R    WNA+       GR  E L L+  M 
Sbjct: 260 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 319

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
             G  +     T    L AC         L+ GK +H+     G    V + T LIDMY+
Sbjct: 320 HAGAAV--GEVTLVSALTACAQ----LGALERGKWVHSCAHSRGMRLSVTLGTALIDMYS 373

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G V  A  VF  M  +NV +W++ ++  A NGM  + L LF+   MES  + PN VT 
Sbjct: 374 KCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKR--MESTGVEPNGVTF 431

Query: 294 VSVLQACAALAALEQGKMIHGYIL-RRGLDSILPVVSALVTMYARCGKLELGQCVFDHM- 351
           V VL+ C+    +++G+     +    G+D  L     +V +Y R G+L+      + M 
Sbjct: 432 VVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMP 491

Query: 352 -DKRDVVSWNSLISSYGVH 369
            +  + V W +L+++  +H
Sbjct: 492 LEPHEGV-WGALLNASRIH 509



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 11/189 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHLTD 108
           N +I      G  R+AL +     +      E+ L+S    C    +L     VHS    
Sbjct: 296 NAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHS 355

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G      L T LI++YS   +V  A  VFD    R +Y W +    L + G G + L L
Sbjct: 356 RGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLAL 415

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL-RHGYNGIVHIMTT 227
           ++RM    TG+  +  T+  VL+ C  +     L+  G+    S+   HG +  +     
Sbjct: 416 FKRME--STGVEPNGVTFVVVLRGCSMA----GLVDEGRACFDSMKSNHGIDPWLEHYGC 469

Query: 228 LIDMYARFG 236
           ++D+Y R G
Sbjct: 470 MVDLYGRAG 478


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/629 (35%), Positives = 346/629 (55%), Gaps = 28/629 (4%)

Query: 46  SLSSRNK---NELIQSLCKQGNLRQALDVLSI-EPNPTQHTYELLLLSCTHHNSLSDALN 101
           ++ SRN    N L+      G  R AL +L + +    ++     + +  H  S      
Sbjct: 75  AMPSRNPVSGNLLMSGYASSGRHRDALALLRVADFGLNEYVLSSAVAATAHVRSYDMGRQ 134

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
            H +    G  + P++ + ++++Y     +D+A  VFD      ++ +N++       G+
Sbjct: 135 CHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQ 194

Query: 162 GEEVLELYRRMNGTGTGIRS--------DRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
                     M+G+ + +RS        D  +Y  VL  C ++      +  G ++H   
Sbjct: 195 ----------MDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTK----EVVLGSQVHTQA 240

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           L+      V++ + L+DMY +      A  VF  +  KN+VSW+A++  Y +N +  +AL
Sbjct: 241 LKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDAL 300

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
           +LF +M ME   + PN  T    L +CA LA L+ G  +    ++ G   +LPV +AL+ 
Sbjct: 301 QLFLDMEMEG--VRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMN 358

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           MY++ G +E  + VF  M  RDVVSWNS+I  Y  HG   +A++ F +M++    PS ++
Sbjct: 359 MYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVT 418

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           F+ VL AC+  GLV+EG      M KE  ++P  EHY CMV LL R  +L+EA + IE  
Sbjct: 419 FIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESN 478

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
            I      W SLL SC+++ N  L  R ++++F+L+P + G YVLL+++YA A+ WD V 
Sbjct: 479 CIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVV 538

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
           +V+RL+   G++K PG S I+V  +++ F S D+ HP  EQ+   L  L  ++K  GYVP
Sbjct: 539 KVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYVP 598

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
              V L+D++ E+KE  ++ HSEKLA+AFGLI T KGE IRI KN+R+C+DCH   K IS
Sbjct: 599 NIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVAIKLIS 658

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
               + I+VRD  RFH   +GVCSC DYW
Sbjct: 659 LATGRRIVVRDTVRFHCIEDGVCSCDDYW 687



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 11/300 (3%)

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           D      LI +Y     +  AR VFD    R     N L      +GR  + L L R   
Sbjct: 49  DVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSGRHRDALALLR--- 105

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
                  +D     YVL + VA++        G++ H   ++ G     ++ + ++ MY 
Sbjct: 106 ------VADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYC 159

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           +   +  A  VF  ++  NV ++++MI  +   G    +  + R M+        + V+ 
Sbjct: 160 QCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQW--DHVSY 217

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
           V+VL  CA+   +  G  +H   L+R L+  + V SALV MY +C        VF+ + +
Sbjct: 218 VAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPE 277

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
           +++VSW +++++Y  +     A+Q+F +M   GV P+  ++   L +C+    ++ G  L
Sbjct: 278 KNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNAL 337



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           L  GK +H  ++R     ++   + L+ +Y +CG+L L + VFD M  R+ VS N L+S 
Sbjct: 32  LSLGKAVHARVVRAARFDVVQY-NNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSG 90

Query: 366 YGVHGYGGKAIQIFK 380
           Y   G    A+ + +
Sbjct: 91  YASSGRHRDALALLR 105


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/542 (36%), Positives = 329/542 (60%), Gaps = 8/542 (1%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LI  Y     ++ AR +FD+   R +  WNA+   LT +G  EE L  +  M   G  ++
Sbjct: 114 LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREG--MQ 171

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D +    + + C     G   +  G+++HA V+R G +  + + ++L  MY R G +  
Sbjct: 172 PDEYGLGSLFRCCA----GLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRD 227

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
                  +   N+VS +  I+   +NG A  ALE F   +M    +  N+VT VS + +C
Sbjct: 228 GEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFF--CLMRGAGVEANAVTFVSAVTSC 285

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           + LAAL QG+ IH   ++ G+D ++PV+++LV MY+RCG L   + V       D+V  +
Sbjct: 286 SDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCS 345

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
           ++IS+YG HG+G KA+ +FK+M+  G  P+ ++F+++L ACSH+GL +EG   FE M K 
Sbjct: 346 AMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKT 405

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
           + ++PSV+HY C+VDLLGR+  L EA  +I  + ++P   +W +LL +C+     ++AER
Sbjct: 406 YGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAER 465

Query: 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
            ++R+ EL+P ++ +YVLL+++ A +  W++V +V+  +  + ++K PG S +E+K +++
Sbjct: 466 IAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIH 525

Query: 541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
            F + DE H +  ++   L  +   +++ GY P   +V +D++ EEKE  +  HSEKLA+
Sbjct: 526 QFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAI 585

Query: 601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
           AF  ++  +G  IR+ KNLR+C+DCH   K +SK   +EI+VRDV+RFHHF++G CSCGD
Sbjct: 586 AFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGD 645

Query: 661 YW 662
           YW
Sbjct: 646 YW 647



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 127/287 (44%), Gaps = 41/287 (14%)

Query: 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
           L   GR +E L  +RR      G+ S+   ++++ +AC A      LL+   ++HA    
Sbjct: 23  LCSTGRVKEAL--HRRFR---EGLWSEPGLFSHIFRACQA----LPLLR---QLHAFAAT 70

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
            G          L+  YA  G    A  +F ++  +NV+SW+ +I  Y +NG    A +L
Sbjct: 71  SGAAADRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKL 130

Query: 276 FREM-----------------------------IMESHDLCPNSVTMVSVLQACAALAAL 306
           F EM                              M    + P+   + S+ + CA L  +
Sbjct: 131 FDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDV 190

Query: 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
             G+ +H Y++R GLD  + V S+L  MY RCG L  G+     +   ++VS N+ IS  
Sbjct: 191 VSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGR 250

Query: 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413
             +G    A++ F  M   GV  + ++FVS + +CS    + +G+ +
Sbjct: 251 TQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQI 297



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 133/291 (45%), Gaps = 10/291 (3%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P ++    L   C     +     VH+++  +G D+D  + + L ++Y     + D   
Sbjct: 171 QPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEA 230

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
                    I   N      T  G  E  LE +  M   G G+ ++  T+   + +C   
Sbjct: 231 ALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMR--GAGVEANAVTFVSAVTSC--- 285

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
               + L  G++IHA  ++ G + +V +MT+L+ MY+R GC+  +  V  + +  ++V  
Sbjct: 286 -SDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLC 344

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           SAMI+ Y  +G   +A+ LF++M+    +  PN VT +++L AC+     ++G      +
Sbjct: 345 SAMISAYGFHGHGQKAVGLFKQMMAAGAE--PNEVTFLTLLYACSHSGLKDEGMNCFELM 402

Query: 317 LRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISS 365
            +  GL   +   + +V +  R G L   + +   M  + D V W +L+S+
Sbjct: 403 TKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSA 453



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 109/255 (42%), Gaps = 28/255 (10%)

Query: 37  SLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSC 90
           SLN  +  T++S R +N         G+   AL+         +E N    T+   + SC
Sbjct: 237 SLNIVSCNTTISGRTQN---------GDAEGALEFFCLMRGAGVEANAV--TFVSAVTSC 285

Query: 91  THHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN 150
           +   +L+    +H+     G D+   ++T L+++YS    + D+  V  +     + + +
Sbjct: 286 SDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCS 345

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
           A+  A    G G++ + L+++M     G   +  T+  +L AC  S     L   G    
Sbjct: 346 AMISAYGFHGHGQKAVGLFKQM--MAAGAEPNEVTFLTLLYACSHS----GLKDEGMNCF 399

Query: 211 ASVLR-HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-ACYARNG 267
             + + +G    V   T ++D+  R GC+  A  +   M V+ + V W  ++ AC  +  
Sbjct: 400 ELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQK- 458

Query: 268 MAFEALELFREMIME 282
             F+  E   E ++E
Sbjct: 459 -KFDMAERIAERVIE 472



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           + +AC AL  L Q   +H +    G  +     + L+  YA  G     + +F+ + KR+
Sbjct: 51  IFRACQALPLLRQ---LHAFAATSGAAADRFTANHLLLAYADLGDFPTARGLFERIPKRN 107

Query: 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           V+SWN LI  Y  +G    A ++F EM    V+    ++ +++   +++GL EE    F 
Sbjct: 108 VMSWNILIGGYVKNGDLETARKLFDEMPARNVA----TWNAMVAGLTNSGLNEESLGFFF 163

Query: 416 SMRKEHM 422
           +MR+E M
Sbjct: 164 AMRREGM 170


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/573 (37%), Positives = 337/573 (58%), Gaps = 21/573 (3%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALT 157
            +H  +   G D    +   ++  YS    + +AR VF +      R    WNA+  A  
Sbjct: 160 QLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACG 219

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA--CVASSCGFSLLKHGKEIHASVLR 215
               G E + L+R M     G++ D FT   VL A  CV    G      G++ H  +++
Sbjct: 220 QHREGMEAVGLFREM--VRRGLKVDMFTMASVLTAFTCVKDLVG------GRQFHGMMIK 271

Query: 216 HGYNGIVHIMTTLIDMYAR-FGCVMYAGFVFSQMAVKNVVSWSAMIACYA-RNGMAFEAL 273
            G++G  H+ + LID+Y++  G ++    VF ++   ++V W+ MI+ ++    ++ + L
Sbjct: 272 SGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGL 331

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-SILPVVSALV 332
             FREM  + +   P+  + V V  AC+ L++   GK +H   ++  +  + + V +ALV
Sbjct: 332 WCFREM--QRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALV 389

Query: 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI 392
            MY++CG +   + VFD M + + VS NS+I+ Y  HG   +++++F+ M+   ++P+ I
Sbjct: 390 AMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSI 449

Query: 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           +F++VL AC H G VEEG+  F  M++   I P  EHY+CM+DLLGRA KL+EA +IIE 
Sbjct: 450 TFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIET 509

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
           +   PG   W +LLG+CR H NVELA +A+     LEP NA  YV+L+++YA+A  W+E 
Sbjct: 510 MPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEA 569

Query: 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV 572
             VKRL+  RG++K PG S IE+ +K++ FV+ D  HP  +++H  +  +  +MK+ GYV
Sbjct: 570 ATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYV 629

Query: 573 PQTKVVLY---DLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
           P  +  L    +++ +E+ER +L HSEKLAVAFGLI+T +G  I + KNLR+C DCH+  
Sbjct: 630 PDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEEGVPILVVKNLRICGDCHNAV 689

Query: 630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           K IS    +EI VRD +RFH F+ G CSC DYW
Sbjct: 690 KLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 194/452 (42%), Gaps = 31/452 (6%)

Query: 63  GNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDP--FLVTK 120
           G +  AL   S+ P  T  +    LL        S   ++H+  T     Q P  F    
Sbjct: 28  GKILHALYFKSLIPPSTYLSNHFTLL-------YSKCGSLHNAQTSFHLTQYPNVFSYNT 80

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LIN Y+    +  AR VFD+  +  I  +N L  A    G     L L+  +     G+ 
Sbjct: 81  LINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGL- 139

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D FT + V+ AC     G       +++H  V+  G++    +   ++  Y+R G +  
Sbjct: 140 -DGFTLSGVITAC-GDDVGLV-----RQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSE 192

Query: 241 AGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           A  VF +M     ++ VSW+AMI    ++    EA+ LFREM+     L  +  TM SVL
Sbjct: 193 ARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRG--LKVDMFTMASVL 250

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC-GKLELGQCVFDHMDKRDV 356
            A   +  L  G+  HG +++ G      V S L+ +Y++C G +   + VF+ +   D+
Sbjct: 251 TAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDL 310

Query: 357 VSWNSLISSYGVH-GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415
           V WN++IS + ++       +  F+EM  +G  P   SFV V  ACS+      GK +  
Sbjct: 311 VLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHA 370

Query: 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475
              K  +    V     +V +  +   + +A ++ + +       +   + G  +    V
Sbjct: 371 LAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEV 430

Query: 476 ELAERASKRLFE--LEPTNAGNYVLLADVYAA 505
           E     S RLFE  LE   A N +    V +A
Sbjct: 431 E-----SLRLFELMLEKDIAPNSITFIAVLSA 457



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 4/128 (3%)

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T  ++L+AC A   L  GK++H    +  +     + +    +Y++CG L   Q  F   
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
              +V S+N+LI++Y  H     A ++F E+      P  +S+ +++ A +  G      
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEI----PQPDIVSYNTLIAAYADRGECGPTL 126

Query: 412 MLFESMRK 419
            LFE +R+
Sbjct: 127 RLFEEVRE 134


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/593 (35%), Positives = 340/593 (57%), Gaps = 18/593 (3%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+   L +C   N L     +H      GFD    +   +I++YS    +++A  +
Sbjct: 71  PNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACM 130

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+    R +  WNA+    T+AG  E+ L L+++M   G  +  D FT+T  LKAC    
Sbjct: 131 FEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFL--DEFTFTSTLKAC---- 184

Query: 198 CGFSLLKHGKEIHASVLRHG--YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
                +K G +IHA ++  G  Y+    +   LID+Y + G +  A  VFS +  K+V+S
Sbjct: 185 SDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVIS 244

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+A+I  YA+ G   E++ELFR++      +  +   + S++   A  A ++QGK +H +
Sbjct: 245 WTALILGYAQEGNLAESMELFRQL--RESSIQVDGFILSSMMGVFADFALVQQGKQMHAF 302

Query: 316 ILR--RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
            ++   G+D  + V ++++ MY +CG +   + +F  M  R+V+SW  +I+ YG HG G 
Sbjct: 303 AIKVPSGVD--ISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGK 360

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +AI++F EM      P  +++++VL  CSH+GLVE+G+  F  +   H I+  VEHYACM
Sbjct: 361 EAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACM 420

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLLGRA +L+EA  +++ + +E    +W +LL +CR+H ++EL +     L  L+  N 
Sbjct: 421 VDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENP 480

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
            NYV+++++YA A  W E +R++ L++++ L+K  GRS +E+ ++++ F   D+ HP  E
Sbjct: 481 VNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTE 540

Query: 554 QLHALLINLSAEMKEK-GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE- 611
           ++H +L  +   MKE+ GYV   K  L+D++ E K   +  HSEKLA+   L+     E 
Sbjct: 541 KIHEILKEMERRMKEELGYVYGVKYALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEEG 600

Query: 612 --TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              IR+ KNLR+C DCH F K +SK      +VRD NRFH F +G+CSC DYW
Sbjct: 601 RKVIRVFKNLRVCGDCHEFIKGLSKILRVVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 165/306 (53%), Gaps = 10/306 (3%)

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           GF  D  L   LI +Y     +  A  VFD+  +R +  W AL       G   E L L+
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
            +M    +G++ + FT++  LKAC       + L  G++IH   ++ G++ +  +  ++I
Sbjct: 62  SKMG--LSGVKPNDFTFSTNLKACGL----LNGLDIGRQIHDICVKTGFDMVNVVGNSII 115

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
           DMY++ G +  A  +F  M V+N++SW+AMIA Y   G   +AL LF++M      L  +
Sbjct: 116 DMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFL--D 173

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRG-LDSI-LPVVSALVTMYARCGKLELGQCV 347
             T  S L+AC+ L A+++G  IH +++  G L S+   V  AL+ +Y +CGKL + + V
Sbjct: 174 EFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRV 233

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407
           F H++++ V+SW +LI  Y   G   +++++F+++    +        S++G  +   LV
Sbjct: 234 FSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALV 293

Query: 408 EEGKML 413
           ++GK +
Sbjct: 294 QQGKQM 299



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 3/132 (2%)

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           G D +L   + L+ MY +CG+L +   VFD M KR+VVSW +L+  +  +G   +++ +F
Sbjct: 4   GFDLMLS--NDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
            +M   GV P+  +F + L AC     ++ G+ + +   K      +V   + ++D+  +
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNS-IIDMYSK 120

Query: 440 ANKLEEAAKIIE 451
             ++ EAA + E
Sbjct: 121 CGRINEAACMFE 132


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/582 (35%), Positives = 333/582 (57%), Gaps = 40/582 (6%)

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           +D    T LI+  +    + D + +  +   R +  W +L  A + A R  E +  ++ M
Sbjct: 171 KDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTM 230

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
                GI  D  T   VL AC         L+ G+ +H  V   G     +++  LIDMY
Sbjct: 231 --LSHGIAPDEVTVIAVLSACAK----LKDLELGRSLHLLVEEKGMPTSENLVVALIDMY 284

Query: 233 ARFGCVMYAGFVFS--------------------------------QMAVKNVVSWSAMI 260
           A+ G   +A  VF                                 +M V++++++++M+
Sbjct: 285 AKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMM 344

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             Y  +G   EAL LF  M M  HDL  ++ T+V++L ACA+L AL+QG+ +H  I +R 
Sbjct: 345 TGYIHSGQLREALLLF--MSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRL 402

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           +++ + + +AL+ MY +CG+++    VF  M KRDV +W ++I+    +G G  A++ F 
Sbjct: 403 VEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFY 462

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           +M   G  P+ +S+++VL ACSH+ L+ EG++ F+ MR  + I P +EHY CM+DLLGR+
Sbjct: 463 QMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRS 522

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
             L+EA  +++ + I+P   +W S+L +CR+H +++LA+ A++ L +LEP   G YV L 
Sbjct: 523 GLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLY 582

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++Y  +  W+   +++ L+E R ++K  G S I V  +++ FV  D+ HP+  ++ A+L 
Sbjct: 583 NIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLE 642

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            +S  +K  GY P T  +  D+D EEKE+ +L HSEKLA+AFGLIN +    + I KNLR
Sbjct: 643 EISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLR 702

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +CEDCHS  K IS+  N+EI+VRD +RFHHFR G CSC D+W
Sbjct: 703 VCEDCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 179/368 (48%), Gaps = 50/368 (13%)

Query: 95  SLSDALNVHSHLTDNG--FDQDP---FLVTKLIN-VYSHFDSVDDARHVFDKTRRRTIYV 148
           ++  A  +H+ LT +G      P    L+  L+N +  H   +  A H+FD+    T ++
Sbjct: 11  TVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMPPST-FL 69

Query: 149 WNALFRALTLAGRG-EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGK 207
           ++   RA + AG        L+RRM   G  +R D FT+ ++ K   +SS   SLL    
Sbjct: 70  FDTALRACSRAGSDPHRPFLLFRRMRRAG--VRPDGFTFHFLFKCSSSSSRPHSLLL-CT 126

Query: 208 EIHASVLRHGY--------NGIVHIM------------------------TTLIDMYARF 235
            +HA+ LR           N ++H+                         T LI   A+ 
Sbjct: 127 MLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKM 186

Query: 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295
           G +     + SQ  V++V+SW+++IA Y+R   A EA+  F+ M+  SH + P+ VT+++
Sbjct: 187 GMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTML--SHGIAPDEVTVIA 244

Query: 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355
           VL ACA L  LE G+ +H  +  +G+ +   +V AL+ MYA+CG     Q VFD + +  
Sbjct: 245 VLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGP 304

Query: 356 -VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
              SWN++I  Y  HG+   A  +F EM    +    I+F S++    H+G + E  +LF
Sbjct: 305 RPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDI----ITFNSMMTGYIHSGQLREALLLF 360

Query: 415 ESMRKEHM 422
            SMR+  +
Sbjct: 361 MSMRRHDL 368



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 22/210 (10%)

Query: 288 PNSVTMVSVLQAC------AALAALEQGKMIHGYI-------LRRGLDSI----LPVVSA 330
           P+S+ + ++L A        + A      +IH YI        RR  D I        + 
Sbjct: 119 PHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTM 178

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           L++  A+ G L   Q +      RDV+SW SLI++Y       +A+  FK M+ HG++P 
Sbjct: 179 LISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPD 238

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA-CMVDLLGRANKLEEAAKI 449
            ++ ++VL AC+    +E G+ L   + ++ M  P+ E+    ++D+  +      A ++
Sbjct: 239 EVTVIAVLSACAKLKDLELGRSLHLLVEEKGM--PTSENLVVALIDMYAKCGDFGHAQQV 296

Query: 450 IEDLRIEPGPKVWGSLL-GSCRIHCNVELA 478
            + L   P P+ W +++ G C+ H +V++A
Sbjct: 297 FDALGRGPRPQSWNAIIDGYCK-HGHVDVA 325



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 107/252 (42%), Gaps = 45/252 (17%)

Query: 53  NELIQSLCKQGNLRQALDV-LSIEPNPTQ---HTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++      G LR+AL + +S+  +  +    T   LL +C    +L     +H+ +  
Sbjct: 341 NSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQ 400

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              + D +L T L+++Y     VD+A  VF +  +R ++ W A+   L   G G+  LE 
Sbjct: 401 RLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEH 460

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + +M     G + +  +Y  VL AC + SC   LL  G+          Y   + I+  +
Sbjct: 461 FYQMR--CDGFQPNSVSYIAVLTAC-SHSC---LLNEGRL---------YFDEMRILYNI 505

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
                 +GC                     MI    R+G+  EA++L + M ++     P
Sbjct: 506 HPQIEHYGC---------------------MIDLLGRSGLLDEAMDLVKTMPIQ-----P 539

Query: 289 NSVTMVSVLQAC 300
           N+V   S+L AC
Sbjct: 540 NAVIWASILSAC 551


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/519 (38%), Positives = 313/519 (60%), Gaps = 13/519 (2%)

Query: 145 TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK 204
           + +  N++ R L+      + L   RRM   G   R + FT   +LK   A       L 
Sbjct: 89  STFQCNSILRVLS---DPSDALRFLRRMRALGR--RGNAFTLAILLKPRCA-------LA 136

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           H +++HA+V+  G+     + T+L+  YA  G    A  +F +M  ++ V+W+ +I+C A
Sbjct: 137 HARQLHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCA 196

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           RN    +AL+LF EM        P+ VT + +LQAC +L AL+ G+ +  Y    G  + 
Sbjct: 197 RNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAK 256

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           L V ++L+ MY+RCG ++    VF    ++ VV+W+++IS    +G+G  AI  F+EMI 
Sbjct: 257 LKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIR 316

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
             V+P   +F  VL ACSH+GLV+EG   F+ MR E+ ++P+V HY C+VDL+GRA  L+
Sbjct: 317 SDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLD 376

Query: 445 EAAKII-EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
           EA +++  ++++ P   +W +LLG+CRIH +V+L ER    L EL+   AG+YVLL + Y
Sbjct: 377 EAYELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLNTY 436

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           AA   W +V  V++L++ +G+Q  PG + +E   ++Y F++ D+ HP+  +++  L  ++
Sbjct: 437 AAVGEWSKVSEVRKLMQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEKLNEIN 496

Query: 564 AEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCE 623
            +++  GYVP     L+DLD+E KE  +  HSEKLA+AF L+ T +   IR+ KNLR+C 
Sbjct: 497 KQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLAKNLRVCV 556

Query: 624 DCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           DCH+FTK  S   N+ ++VRD  RFHHF+ G CSC DYW
Sbjct: 557 DCHNFTKVFSGIYNRLVIVRDRTRFHHFQGGKCSCNDYW 595



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 136/292 (46%), Gaps = 9/292 (3%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           +L+ A  +H+++   G  +D  L T L+  Y++    D AR +F +   R    WN L  
Sbjct: 134 ALAHARQLHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLIS 193

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
                 R ++ L+L+  M G  +G   D  T   +L+AC +       L  G+++ A   
Sbjct: 194 CCARNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTS----LGALDFGEQVWAYAE 249

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
            HGY   + +  +LI MY+R GCV  A  VF     K+VV+WSAMI+  A NG   +A+ 
Sbjct: 250 EHGYGAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAIS 309

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVT 333
            F EMI    D+ P+  T   VL AC+    +++G +         GL   +     +V 
Sbjct: 310 AFEEMIRS--DVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVD 367

Query: 334 MYARCGKL-ELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
           +  R G L E  + V + M    D   W +L+ +  +HG+     ++   +I
Sbjct: 368 LMGRAGLLDEAYELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLI 419



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 118/314 (37%), Gaps = 72/314 (22%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T  LLL +CT   +L     V ++  ++G+     +   LI +YS    VD A  V
Sbjct: 220 PDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCGCVDKAYRV 279

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F  T ++++  W+A+   L   G G++ +  +  M    + +  D  T+T VL AC  S 
Sbjct: 280 FCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEM--IRSDVAPDEQTFTGVLSACSHSG 337

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                                         L+D   RF  +M   +        NV  + 
Sbjct: 338 ------------------------------LVDEGFRFFDMMRCEYGLK----PNVRHYG 363

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            ++    R G+  EA EL    +     + P++    ++L AC           IHG++ 
Sbjct: 364 CIVDLMGRAGLLDEAYEL----VTNEMKVAPDATIWRTLLGAC----------RIHGHV- 408

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
               D    V+S L+ + A+    + G  V              L+++Y   G   K  +
Sbjct: 409 ----DLGERVISNLIELKAQ----QAGDYVL-------------LLNTYAAVGEWSKVSE 447

Query: 378 IFKEMIYHGVSPSP 391
           + K M   G+  +P
Sbjct: 448 VRKLMQEKGIQTTP 461


>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g04780-like [Glycine max]
          Length = 632

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/584 (38%), Positives = 332/584 (56%), Gaps = 16/584 (2%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LL  C    S       H+ +   G + D    T LIN+YS    V   R   D+   ++
Sbjct: 56  LLQLCAKTGSSMGGRACHAQIIRIGLEMDILTSTMLINMYSKCSLVHSTRKKXDEMLVKS 115

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           + + N    ALT      + L+L  RM    T    + FT + VL  C A  C    +  
Sbjct: 116 LILXNTRIGALTQNAEDRKALKLLIRMQREVTPF--NEFTISSVLCNC-AFKCA---ILE 169

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
             ++HA  ++   +    + T L+ +YA+   +  A  +F  M  KN V+WS+M+A Y +
Sbjct: 170 CMQLHAFSIKAAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQ 229

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           NG   EAL LF    +   D  P +++  S + ACA LA L +GK +H    + G  S +
Sbjct: 230 NGFHDEALLLFHNAQLMGFDQDPFNIS--SAVSACAGLATLVEGKQVHAMSHKSGFGSNI 287

Query: 326 PVVSALVTMYARCGKLELGQCVFD-HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
            V S+L+ MYA+CG +     VF+  ++ R +V WN++IS +  H    +A+ +F++M  
Sbjct: 288 YVASSLIDMYAKCGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQ 347

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            G  P  +++VSVL ACSH GL EEG+  F+ M ++H + PSV HY+CM+D+LGRA  ++
Sbjct: 348 RGFFPDDVTYVSVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVQ 407

Query: 445 EAAKIIEDLRIEPGPKVWGSLLG-------SCRIHCNVELAERASKRLFELEPTNAGNYV 497
           +A  +I  +       +WGS+ G       SCRI+ N+E AE A+K LFE+EP NAGN++
Sbjct: 408 KAYDLIGRMSFNATSSMWGSVRGLSXLIKASCRIYGNIEFAEIAAKHLFEMEPNNAGNHI 467

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LLA++YAA    DEV R ++LL    ++K  G S IE+K K++SF   +  HPQ +  +A
Sbjct: 468 LLANIYAANKKSDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDNYA 527

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            L NL  E+K+  Y   T   L+D++   K  ++  HSEKLA+ FGL+       IRI K
Sbjct: 528 KLDNLVVELKKLNYKVDTNNDLHDVEESRKHMLLGHHSEKLAITFGLVCLPTEIPIRIIK 587

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
           NLR+C DCH+F K +SKFA++EI+VRD NRFHHF++G+CSCG++
Sbjct: 588 NLRICGDCHTFMKLVSKFASREIIVRDTNRFHHFKDGLCSCGEF 631



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 159/320 (49%), Gaps = 18/320 (5%)

Query: 53  NELIQSLCKQGNLRQALDVL---SIEPNP-TQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N  I +L +    R+AL +L     E  P  + T   +L +C    ++ + + +H+    
Sbjct: 120 NTRIGALTQNAEDRKALKLLIRMQREVTPFNEFTISSVLCNCAFKCAILECMQLHAFSIK 179

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              D + F+ T L++VY+   S+ DA  +F+    +    W+++       G  +E L L
Sbjct: 180 AAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHDEALLL 239

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +   N    G   D F  +  + AC     G + L  GK++HA   + G+   +++ ++L
Sbjct: 240 FH--NAQLMGFDQDPFNISSAVSACA----GLATLVEGKQVHAMSHKSGFGSNIYVASSL 293

Query: 229 IDMYARFGCVMYAGFVFSQMA-VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           IDMYA+ GC+  A  VF     V+++V W+AMI+ +AR+ +A EA+ LF +  M+     
Sbjct: 294 IDMYAKCGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEK--MQQRGFF 351

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P+ VT VSVL AC+ +   E+G+     ++R+   ++ P V     M    G+  L Q  
Sbjct: 352 PDDVTYVSVLNACSHMGLHEEGQKYFDLMVRQ--HNLSPSVLHYSCMIDILGRAGLVQKA 409

Query: 348 FDHMDKRDVVSWNSLISSYG 367
           +D + +   +S+N+  S +G
Sbjct: 410 YDLIGR---MSFNATSSMWG 426


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/556 (38%), Positives = 318/556 (57%), Gaps = 42/556 (7%)

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
           R  T+   N+L RAL    R       +R +      +  D +++T++++A  A +   +
Sbjct: 158 RPATLLAHNSLLRALARGRRPHLAFGAFRDLP-----LVPDNYSFTFLVRAATALAAAAA 212

Query: 202 LLKHGK----EIHASVLRHGYNGIVHIMTTLIDMYARFG------------------CVM 239
                      +HAS LRHG+ G  H+ +  + MYA  G                  CV 
Sbjct: 213 SALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVT 272

Query: 240 -------------YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
                         A  +F  M  ++ V+W+AMIA Y   G + EAL LF EM      +
Sbjct: 273 AMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAV 332

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
               VT+VS L ACA L ALE+GK +H     RG+   + + +AL+ MY++CG +     
Sbjct: 333 --GEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAME 390

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VFD M +R+V +W S +S   ++G G   + +FK M   GV P+ ++FV VL  CS AGL
Sbjct: 391 VFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGL 450

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V+EG+  F+SM+  H I P +EHY CMVDL GRA +L++A   I  + +EP   VWG+LL
Sbjct: 451 VDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALL 510

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            + RIH NVEL + A  +L  +E  N   +VLL+++YA +  W  V  V+ +++A+G++K
Sbjct: 511 NASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKK 570

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
           VPG S IEV  K++ F    + HP+ +++  +L  ++  ++ +GY+  TK VL+D++ E+
Sbjct: 571 VPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEED 630

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           KE  +  HSEKLA+AFGL+   +   IRI KNLR+CEDCH +TK ISK  N+EI++RD N
Sbjct: 631 KEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRN 690

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF++G CSC DYW
Sbjct: 691 RFHHFKDGACSCKDYW 706



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 119/259 (45%), Gaps = 12/259 (4%)

Query: 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMN 173
           D   VT ++   +     D AR +FD   +R    WNA+       GR  E L L+  M 
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326

Query: 174 GTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA 233
             G  +     T    L AC         L+ GK +H+     G    V + T LIDMY+
Sbjct: 327 HAGAAV--GEVTLVSALTACAQ----LGALERGKWVHSCAHSRGMRLSVTLGTALIDMYS 380

Query: 234 RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           + G V  A  VF  M  +NV +W++ ++  A NGM  + L LF+   MES  + PN VT 
Sbjct: 381 KCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKR--MESTGVEPNGVTF 438

Query: 294 VSVLQACAALAALEQGKMIHGYIL-RRGLDSILPVVSALVTMYARCGKLELGQCVFDHM- 351
           V VL+ C+    +++G+     +    G+D  L     +V +Y R G+L+      + M 
Sbjct: 439 VVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMP 498

Query: 352 -DKRDVVSWNSLISSYGVH 369
            +  + V W +L+++  +H
Sbjct: 499 LEPHEGV-WGALLNASRIH 516



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 11/189 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHLTD 108
           N +I      G  R+AL +     +      E+ L+S    C    +L     VHS    
Sbjct: 303 NAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHS 362

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G      L T LI++YS   +V  A  VFD    R +Y W +    L + G G + L L
Sbjct: 363 RGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLAL 422

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL-RHGYNGIVHIMTT 227
           ++RM    TG+  +  T+  VL+ C  +     L+  G+    S+   HG +  +     
Sbjct: 423 FKRME--STGVEPNGVTFVVVLRGCSMA----GLVDEGRACFDSMKSNHGIDPWLEHYGC 476

Query: 228 LIDMYARFG 236
           ++D+Y R G
Sbjct: 477 MVDLYGRAG 485


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/587 (37%), Positives = 342/587 (58%), Gaps = 22/587 (3%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDKTRR 143
           LL  C   NS+     +H+H+  NG+  +P +  KL+N    S   S+  A+ VF +   
Sbjct: 11  LLQGC---NSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHN 67

Query: 144 RTIYVWNALFRALTLAGRGEEV--LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
                WN++ R  + +    ++  +  Y  M  + +  R D +T++++LKAC  +     
Sbjct: 68  PQTPAWNSMIRGFSQSPSPLQLQAIVFYNHML-SASHARPDTYTFSFLLKACEEAK---- 122

Query: 202 LLKHGK--EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
             + GK  E+H  ++R GY+  V + T LI  YA  G +  A  VF +M  +++VSW++M
Sbjct: 123 --EEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSM 180

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I+CY + G+  EAL+++ +M +   ++  +  T+VS+L +CA + AL  G  +H +   R
Sbjct: 181 ISCYCQTGLHEEALKMYDQMRIS--NVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGER 238

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
            L   + V +AL+ MYA+CG L     +F+ M KRDV +WNS+I  YGVHG G +AI  F
Sbjct: 239 RLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFF 298

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
             M+  GV P+ I+F+ +L  CSH GLV+EG   F  M  E  ++P ++HY CMVDL GR
Sbjct: 299 GSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGR 358

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           A KL+EA ++I     +  P +W +LLGSC+IH NVE+ E A + L +L    AG+ VLL
Sbjct: 359 AGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLL 418

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           + +YA A     V R+++L+++RG++  PG S IEV  +++ FV  D+ HP   +++  L
Sbjct: 419 SGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKL 478

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERI----VLGHSEKLAVAFGLINTSKGETIRI 615
             +       GY  +   ++   ++  +E         HSEKLA+A+GL  T +G ++ I
Sbjct: 479 EEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLI 538

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+C DCH+FTKF+S   ++EI+VRD  RFHHF+ G CSC ++W
Sbjct: 539 VKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 22/300 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL +C           VH  +   G+DQD  L T LI  Y+    ++ A  V
Sbjct: 106 PDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKV 165

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++   R +  WN++       G  EE L++Y +M  +  G   D FT   +L +C    
Sbjct: 166 FEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGF--DGFTLVSLLSSCA--- 220

Query: 198 CGFSLLKHGKEIHASVLRHGYNG------IVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
                  H   +H  V  H + G       + +   LIDMYA+ G +  A  +F+ M  +
Sbjct: 221 -------HVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKR 273

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-K 310
           +V +W++MI  Y  +G   EA+  F  M+M    + PNS+T + +L  C+    +++G +
Sbjct: 274 DVFTWNSMIVGYGVHGRGDEAITFFGSMLMAG--VRPNSITFLGLLCGCSHQGLVKEGVQ 331

Query: 311 MIHGYILRRGLDSILPVVSALVTMYARCGKL-ELGQCVFDHMDKRDVVSWNSLISSYGVH 369
             H       L   +     +V ++ R GKL E  + +     + D V W +L+ S  +H
Sbjct: 332 YFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIH 391


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/613 (36%), Positives = 336/613 (54%), Gaps = 43/613 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF-DQDPFLVTKLINVYSHFDSVDDARH 136
           P   T+  LL   T   +L     + +H   +GF D + F+    I+++S    V+ AR 
Sbjct: 133 PDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARK 192

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FD      +  WN +        R EE   L+  M      +  +  T   +L AC   
Sbjct: 193 IFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSAC--- 249

Query: 197 SCGFSLLKHGKEIHASVLRHGY---NGIVHIMTTLIDMYARFG----------------- 236
                 L  GK I+   ++ G    N I+     LIDM+A  G                 
Sbjct: 250 -SKLKDLVGGKCIYNKYIKEGIVEPNLILE--NALIDMFASCGEMDAARGVFDEMKTRDV 306

Query: 237 ---CVMYAGFV-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282
                +  GF            F QM  ++ VSW+AMI  Y R     E L LFR+M M 
Sbjct: 307 ISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMS 366

Query: 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
             ++ P+  TMVS+L ACA L ALE G+    YI +  + +   + +AL+ MY +CG +E
Sbjct: 367 --NVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVE 424

Query: 343 LGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402
             + +F+ M K+D  +W ++I     +G+G +A+ +F  M+   V+P  I+++ V+ AC+
Sbjct: 425 KAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACT 484

Query: 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVW 462
           H GLV +GK  F +M  +H I+P++ HY CMVDLLGRA  L+EA ++I ++ ++P   VW
Sbjct: 485 HVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVW 544

Query: 463 GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522
           GSLLG+CR+H NV+LAE A+  + ELEP N   YVLL ++YAA   W  +  V++++  R
Sbjct: 545 GSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMER 604

Query: 523 GLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDL 582
           G++K+PG S +E+   +Y FV+ D+ HPQ ++++A L N+  ++   GY P T  V  D+
Sbjct: 605 GIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDV 664

Query: 583 DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILV 642
             E+KE  +  HSEKLA+A+ LI++ KG TIRI KNLR+C DCH     +SK  N+E++V
Sbjct: 665 GEEDKETALYMHSEKLAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIV 724

Query: 643 RDVNRFHHFRNGV 655
           RD  RFHHFR+G+
Sbjct: 725 RDKTRFHHFRHGL 737



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 192/404 (47%), Gaps = 45/404 (11%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD--DARHVFDKTRR 143
           LL +C   N++ +   +HS     G   +   +TK+I      +S D   AR VFD+  +
Sbjct: 41  LLETC---NTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQ 97

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
            ++++WN + +  +     E  + LY+ M      I+ D FT+ ++LK           L
Sbjct: 98  PSVFIWNTMIKGYSRINCSESGVSLYKLM--LVHNIKPDGFTFPFLLKGFTKDMA----L 151

Query: 204 KHGKEIHASVLRHGY-NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIAC 262
           K+GK +    + HG+ +  + +    I +++  G V YA  +F       VV+W+ +++ 
Sbjct: 152 KYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSG 211

Query: 263 YARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL- 321
           Y R     E+  LF EM  +   + PNSVT+V +L AC+ L  L  GK I+   ++ G+ 
Sbjct: 212 YNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIV 271

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG-------------- 367
           +  L + +AL+ M+A CG+++  + VFD M  RDV+SW S+++ +               
Sbjct: 272 EPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQ 331

Query: 368 ------------VHGY-----GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
                       + GY       + + +F++M    V P   + VS+L AC+H G +E G
Sbjct: 332 MPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELG 391

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           +     + K  +   +    A ++D+  +   +E+A KI  +++
Sbjct: 392 EWAKTYIDKNKIKNDTFIGNA-LIDMYFKCGNVEKAKKIFNEMQ 434



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 151/342 (44%), Gaps = 24/342 (7%)

Query: 33  CCCVSLNSSTTPTSLSSRNK-NELIQSLCKQGN-LRQALDVLSIEPNPT-QHTYELLLLS 89
           C CVS NS T    LS+ +K  +L+   C     +++ +    +EPN   ++    +  S
Sbjct: 232 CECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGI----VEPNLILENALIDMFAS 287

Query: 90  CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVW 149
           C   ++            D    +D    T ++  +++   +D AR  FD+   R    W
Sbjct: 288 CGEMDAARGVF-------DEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSW 340

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
            A+        R +EVL L+R M    + ++ D FT   +L AC         L+ G+  
Sbjct: 341 TAMIDGYLRMNRFKEVLTLFRDMQ--MSNVKPDEFTMVSILTACAH----LGALELGEWA 394

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
              + ++       I   LIDMY + G V  A  +F++M  K+  +W+AMI   A NG  
Sbjct: 395 KTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHG 454

Query: 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK-MIHGYILRRGLDSILPVV 328
            EAL +F  M+  S  + P+ +T + V+ AC  +  + +GK       ++ G+   L   
Sbjct: 455 EEALTMFSYMLEAS--VTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHY 512

Query: 329 SALVTMYARCGKL-ELGQCVFDHMDKRDVVSWNSLISSYGVH 369
             +V +  R G L E  + + +   K + + W SL+ +  VH
Sbjct: 513 GCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVH 554



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 158/324 (48%), Gaps = 13/324 (4%)

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYA---RFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           +IH+  ++ G +   H+  T + ++      G V YA  VF ++   +V  W+ MI  Y+
Sbjct: 53  QIHSQTIKTGLSS-NHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYS 111

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG-LDS 323
           R   +   + L++ M++  H++ P+  T   +L+      AL+ GK++  + +  G LDS
Sbjct: 112 RINCSESGVSLYKLMLV--HNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDS 169

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            L V    + +++ CG +   + +FD  D  +VV+WN ++S Y       ++ ++F EM 
Sbjct: 170 NLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEME 229

Query: 384 Y--HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
                VSP+ ++ V +L ACS    +  GK ++    KE ++ P++     ++D+     
Sbjct: 230 KKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCG 289

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
           +++ A  + ++++       W S++      C ++LA +   ++ E +     ++  + D
Sbjct: 290 EMDAARGVFDEMKTRDVIS-WTSIVTGFANTCRIDLARKYFDQMPERDYV---SWTAMID 345

Query: 502 VYAAADMWDEVKRVKRLLEARGLQ 525
            Y   + + EV  + R ++   ++
Sbjct: 346 GYLRMNRFKEVLTLFRDMQMSNVK 369


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/647 (34%), Positives = 365/647 (56%), Gaps = 69/647 (10%)

Query: 77  NPTQHTYE--------LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS-- 126
           NPTQ  Y          L        ++ D   +H+    +G  +D     +++   +  
Sbjct: 2   NPTQTLYSPGGNSPASSLFPQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATS 61

Query: 127 --HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL--ELYRRMNGTGTGIRSD 182
             H   +D A  +F++  +R  + WN + R  + +   + ++   L+  M  +   I  +
Sbjct: 62  DLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMM-SDEFIEPN 120

Query: 183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG-----C 237
           RFT+  VLKAC  +      ++ GK+IH   L++G+ G   +M+ L+ MY   G     C
Sbjct: 121 RFTFPSVLKACAKTG----KIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDAC 176

Query: 238 VMY----------------------------------------AGFVFSQMAVKNVVSWS 257
           V++                                        A  +F +M  ++VVSW+
Sbjct: 177 VLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWN 236

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            MI+ Y++NG   +A+E+FREM  +  D+ PN VT+VSVL A + L +LE G+ +H Y  
Sbjct: 237 TMISGYSQNGFFKDAVEVFREM-KKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAE 295

Query: 318 RRGL--DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
             G+  D +L   SAL+ MY++CG +E    VF+ + + +V++W+++I+ + +HG  G A
Sbjct: 296 DSGIRIDDVLG--SALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDA 353

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           I  F +M   GV PS ++++++L ACSHAGLVEEG+  F  M     + P +EHY CMVD
Sbjct: 354 IDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVD 413

Query: 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495
           LLGR   L+EA + I ++ I+P   +W +LLG+CR+H NVE+ +R +  L ++ P ++G 
Sbjct: 414 LLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGA 473

Query: 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQL 555
           YV L+++YA+   W EV  ++  ++   ++K PG S I++   ++ F+  D+ HP+ +++
Sbjct: 474 YVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEI 533

Query: 556 HALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRI 615
           +++L+ +S +++  GY P T  VL +L+ E+KE  +  HSEK+A AFGLI+TS G+ IRI
Sbjct: 534 NSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRI 593

Query: 616 TKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            KNLR+CEDCHS  K ISK   ++I VRD  RFHHF++G CSC DYW
Sbjct: 594 VKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 11/148 (7%)

Query: 53  NELIQSLCKQGNLRQALDVL-------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSH 105
           N +I    + G  + A++V         I PN    T   +L + +   SL     +H +
Sbjct: 236 NTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYV--TLVSVLPAVSRLGSLELGEWLHLY 293

Query: 106 LTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
             D+G   D  L + LI++YS    ++ A  VF++  R  +  W+A+     + G+  + 
Sbjct: 294 AEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDA 353

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           ++ + +M     G+R     Y  +L AC
Sbjct: 354 IDCFCKMR--QAGVRPSDVAYINLLTAC 379


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/666 (33%), Positives = 348/666 (52%), Gaps = 97/666 (14%)

Query: 80  QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS------------- 126
            +TY LL+ +C+   S  +A  VH+H+   GFD D ++   LIN +S             
Sbjct: 213 NYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFN 272

Query: 127 ------------------HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
                                +V++A+H++ +   R+I   N++     + G   E  +L
Sbjct: 273 ESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKL 332

Query: 169 YRRM-----------------------------NGTGTGIRSDRFTYTYVLKACVASSCG 199
           +  M                                  G+  D       L AC      
Sbjct: 333 FDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACA----N 388

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA------------------ 241
             ++  GK IH+  L+ G    +++   LI MY++ G +M A                  
Sbjct: 389 LLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSM 448

Query: 242 --GF-----------VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
             G+           +F  M  K+VVSWS+MI+ YA+N +  E L LF+EM M      P
Sbjct: 449 ISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFK--P 506

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           +  T+VSV+ ACA LAALEQGK +H YI R GL   + + + L+ MY +CG +E    VF
Sbjct: 507 DETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVF 566

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             M ++ + +WN+LI    ++G    ++ +F  M    V+P+ I+F+ VLGAC H GLV+
Sbjct: 567 YGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVD 626

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG+  F SM  +H I+P+V+HY CMVDLLGRA KL+EA +++  + + P    WG+LLG+
Sbjct: 627 EGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGA 686

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C+ H + E+  R  ++L EL+P + G +VLL+++YA+   WD+V  ++ ++    + K+P
Sbjct: 687 CKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIP 746

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S IE    ++ F++ D+ HP  + +  +L+ ++ ++K +GY P    VL D+D EEKE
Sbjct: 747 GCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKE 806

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +  HSEKLA+AFGLIN S    IRI KNLR+C DCH+  K ISK   ++I+VRD +RF
Sbjct: 807 STLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRF 866

Query: 649 HHFRNG 654
           HHF  G
Sbjct: 867 HHFEQG 872



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 167/390 (42%), Gaps = 99/390 (25%)

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
           LY+ M     G  +D +TY  +++AC      +      K++H  VL+ G++  V++  T
Sbjct: 200 LYKSMLSNYLG--ADNYTYPLLIQACSIRRSEW----EAKQVHNHVLKLGFDSDVYVRNT 253

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY----------------------AR 265
           LI+ ++    +  A  VF++ +V + VSW++++A Y                      A 
Sbjct: 254 LINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIAS 313

Query: 266 N---------GMAFEALELFREMI-----------------------------MESHDLC 287
           N         G+  EA +LF EM+                             M    + 
Sbjct: 314 NSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVM 373

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL---- 343
            + V  VS L ACA L  +  GK+IH   L+ G +S + + +AL+ MY++CG + +    
Sbjct: 374 VDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKL 433

Query: 344 ---------------------------GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
                                       + +FD M ++DVVSW+S+IS Y  +    + +
Sbjct: 434 FDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETL 493

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            +F+EM   G  P   + VSV+ AC+    +E+GK +   +++  +   +V     ++D+
Sbjct: 494 ALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTI-NVILGTTLIDM 552

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
             +   +E A ++   + IE G   W +L+
Sbjct: 553 YMKCGCVETALEVFYGM-IEKGISTWNALI 581



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           A  L++ M+  S+ L  ++ T   ++QAC+   +  + K +H ++L+ G DS + V + L
Sbjct: 197 AFTLYKSML--SNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTL 254

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           +  ++ C  +     VF+     D VSWNS+++ Y   G   +A  I+ +M    +  S 
Sbjct: 255 INCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASN 314

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
            S + + G     GLV E   LF+ M ++ M+
Sbjct: 315 -SMIVLFGM---RGLVVEACKLFDEMLEKDMV 342


>gi|125528180|gb|EAY76294.1| hypothetical protein OsI_04228 [Oryza sativa Indica Group]
          Length = 646

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 237/628 (37%), Positives = 353/628 (56%), Gaps = 32/628 (5%)

Query: 56  IQSLCKQGNLRQALDVLS-IEPNPTQHTYEL--LLLSCTHHNSLSDALNVHSHLTDNGF- 111
           +++L + G  R+AL +L   +P+P  H   L   ++SC   +  S    +H+     G  
Sbjct: 30  VRTLTRLGRHREALALLRHGDPSPPPHALALPAAVISCAKLHLASGVAQIHALAAKRGLL 89

Query: 112 -DQDPFLVTKLINVYSHFDSVDDARHVFDK--------TRRRTIYVWNALFRALTLAGRG 162
              D +L++ L++ YS    +  AR + D+           RT +  N+L     L G  
Sbjct: 90  PSSDAYLLSALLSSYSRLRLLPLARQLLDELPLASTPPATARTAF--NSLISGCALHGVP 147

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
                L+RRM     G+R D  T   ++          + L    ++HA   R G     
Sbjct: 148 AGCFSLFRRMR-VAAGVRFDAVTLLALVP--------VAPLGIVPQLHALAARSGLAANT 198

Query: 223 HIMTTLIDMYARFGC--VMYAGFVFSQM--AVKNVVSWSAMIACYARNGMAFEALELFRE 278
            +   L+ +YAR G      A  VF +M  A +++VSW+A+I+ +A+NG+A EA+EL+R 
Sbjct: 199 SVANCLVSVYARGGGGGASLARQVFEEMPRASRDLVSWNAVISAHAQNGLAVEAVELYRR 258

Query: 279 MI-MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMY 335
           M   E   + P++VT+V VL +CA   A   G  +  Y+     G    LP+ +AL+  +
Sbjct: 259 MRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVEQYVRDTIPGFRDNLPLCNALINFH 318

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ARCG L   Q +FD M +R VVSW +LI  YG+HG G  A+ +F+ M+    +P  ++ V
Sbjct: 319 ARCGSLAQAQELFDEMPERSVVSWTALIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMV 378

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
            +L ACSHAG+ +EG+  F +M +++ +RP +EHY CMVDLLGRA +L+EA ++I  + +
Sbjct: 379 GLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPM 438

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
                VWG+LLG+C+IH NVE+ E A +R+  LEP N G YVL+A++YA A   D V +V
Sbjct: 439 AADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYYVLMANIYADAGQLDGVAKV 498

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT 575
           +  +  RGL+K PG S +E K K++ F++ D  HPQ  +++ L++ L   +KEK      
Sbjct: 499 RAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIYELVVELERMVKEKTGGDVV 558

Query: 576 KVVLYDLDAEEKERIVLG-HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
           +       AE     ++G HSEKLAVAFGL+NT  G  I + KNLR+C DCHSF K IS+
Sbjct: 559 EERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTISE 618

Query: 635 FANKEILVRDVNRFHHFRNGVCSCGDYW 662
             N+  LVRD +RFH F NG CSC DYW
Sbjct: 619 LTNRAFLVRDASRFHRFENGACSCRDYW 646


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/626 (34%), Positives = 344/626 (54%), Gaps = 43/626 (6%)

Query: 78   PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
            P Q+T   +L  C+  N+L     VH+ +  NG D D  L   ++++Y      + A  +
Sbjct: 388  PNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERL 447

Query: 138  FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT-------------GIRSDRF 184
            F+      +  WN +  A   AG  E+ L+++RR+                  G      
Sbjct: 448  FELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHAL 507

Query: 185  TYTYVLKACVA--SSCGFSL-------LKH---GKEIHASVLRHGYNGIVHIMTTLIDMY 232
               Y +  C    S+  FS+       L H   G+++H  VL+ G++    I ++L++MY
Sbjct: 508  EQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMY 567

Query: 233  ARFGCVMYAGFVFSQMAVK----------------NVVSWSAMIACYARNGMAFEALELF 276
             + G +  A  +   + +                  +VSW +M++ Y  NG   + L+ F
Sbjct: 568  CKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTF 627

Query: 277  REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
            R M+ E   +  +  T+ +++ ACA    LE G+ +H Y+ + G      V S+L+ MY+
Sbjct: 628  RLMVREL--VVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYS 685

Query: 337  RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
            + G L+    VF   ++ ++V W S+IS Y +HG G  AI +F+EM+  G+ P+ ++F+ 
Sbjct: 686  KSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLG 745

Query: 397  VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
            VL ACSHAGL+EEG   F  M+  + I P VEH   MVDL GRA  L +    I    I 
Sbjct: 746  VLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGIS 805

Query: 457  PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516
                VW S L SCR+H NVE+ +  S+ L ++ P++ G YVLL+++ A+   WDE  RV+
Sbjct: 806  HLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVR 865

Query: 517  RLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTK 576
             L+  RG++K PG+S I++K ++++FV  D  HPQ +++++ L  L   +KE GY    K
Sbjct: 866  SLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVK 925

Query: 577  VVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFA 636
            +V+ D++ E+ E ++  HSEKLAV FG+INT+    IRI KNLR+C DCH+F K+ S+  
Sbjct: 926  LVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLL 985

Query: 637  NKEILVRDVNRFHHFRNGVCSCGDYW 662
            ++EI+VRD++RFHHF++G CSCGDYW
Sbjct: 986  DREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 204/439 (46%), Gaps = 60/439 (13%)

Query: 85  LLLLSCT-HHNSLSDAL----NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD 139
           L L SC+ +H +LS++      +H+    NG  Q       L+ +Y+  +++  A+ +FD
Sbjct: 289 LWLQSCSLYHFTLSNSPPPLGTLHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFD 348

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           +  +R    W  L      AG  E V  L+R M   G     +++T + VLK C   +  
Sbjct: 349 EIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGAC--PNQYTLSSVLKCCSLDNN- 405

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
              L+ GK +HA +LR+G +  V +  +++D+Y +     YA  +F  M   +VVSW+ M
Sbjct: 406 ---LQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIM 462

Query: 260 IACYARNGMAFEALELFREMI------------------MESHDL--------CP---NS 290
           I  Y R G   ++L++FR +                    E H L        C    ++
Sbjct: 463 IGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSA 522

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           VT    L   ++L+ +E G+ +HG +L+ G DS   + S+LV MY +CG+++    +   
Sbjct: 523 VTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRD 582

Query: 351 M----------------DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           +                 K  +VSW S++S Y  +G     ++ F+ M+   V     + 
Sbjct: 583 VPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTV 642

Query: 395 VSVLGACSHAGLVEEGKMLFESMRK-EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            +++ AC++AG++E G+ +   ++K  H I   V   + ++D+  ++  L++A  +    
Sbjct: 643 TTIISACANAGILEFGRHVHAYVQKIGHRIDAYVG--SSLIDMYSKSGSLDDAWMVFRQS 700

Query: 454 RIEPGPKVWGSLLGSCRIH 472
             EP   +W S++    +H
Sbjct: 701 N-EPNIVMWTSMISGYALH 718


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/600 (35%), Positives = 342/600 (57%), Gaps = 48/600 (8%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYS--HFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            + + +       +P L TK + + +  H   +  A+ VF+       ++WNA+ RA + 
Sbjct: 6   QIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAYSN 65

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGK--EIHASVLRH 216
           +   E     Y++M    + +  + +T+ ++L+AC       +LL  G+  ++H  V++ 
Sbjct: 66  SDEPELAFLSYQQM--LSSSVPHNSYTFPFLLRACR------NLLAMGEALQVHGLVIKL 117

Query: 217 GY-------NGIVHI------------------------MTTLIDMYARFGCVMYAGFVF 245
           G+       N ++H+                           +ID Y + G V  A  VF
Sbjct: 118 GFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVF 177

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
             M +KNVVSW+++I+     G + EAL L  EM     +L  + V + S+L ACA L A
Sbjct: 178 LDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFEL--DGVAIASLLTACANLGA 235

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM--DKRDVVSWNSLI 363
           L+QG+ +H Y+L  G+D    +  ALV MY +CG +E    VF  +  +++DV  W ++I
Sbjct: 236 LDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMI 295

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
             + +HG G +A++ F  M   G+ P+ I+F +VL ACS+ GLVEEGK LF+SM+  + +
Sbjct: 296 DGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNV 355

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
            PS+EHY CMVDLLGR+ +L+EA ++I+ + ++P   +WG+LL +C IH +  L  +   
Sbjct: 356 NPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGA 415

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
            L E++  ++G Y+ LA + AA   W E   V+  +++ G+   PG+S + +   ++ F+
Sbjct: 416 HLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFL 475

Query: 544 SVDEFHPQFEQLHALLINLSAEMKE-KGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAF 602
           +  + HPQ EQ+   L  ++  +++ +GY P TK +L DL+ EEKE  +  HSEKLA+AF
Sbjct: 476 AGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAF 535

Query: 603 GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           GLINT  G TIR+ KNLR+C DCH+  K +S+  ++EI++RD  RFHHFR+G CSC DYW
Sbjct: 536 GLINTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 140/326 (42%), Gaps = 47/326 (14%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
           +T+  LL +C +  ++ +AL VH  +   GF  D F +  L++VY+    +  AR +FD 
Sbjct: 89  YTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDN 148

Query: 141 TRRRTIYVWN-------------------------------ALFRALTLAGRGEEVLELY 169
              R    WN                               +L   L  AG+  E L L 
Sbjct: 149 IPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLC 208

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
             M     G   D      +L AC         L  G+ +H  VL +G +    I   L+
Sbjct: 209 YEMQ--NAGFELDGVAIASLLTACA----NLGALDQGRWLHFYVLNNGVDVDRVIGCALV 262

Query: 230 DMYARFGCVMYAGFVFSQMA--VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           +MY + G +  A  VF ++    K+V  W+AMI  +A +G   EALE F  M  E   + 
Sbjct: 263 NMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREG--IR 320

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALVTMYARCGKLELG 344
           PNS+T  +VL+AC+    +E+GK +   +  +   ++ P +     +V +  R G+L+  
Sbjct: 321 PNSITFTAVLRACSYGGLVEEGKELFKSM--KCFYNVNPSIEHYGCMVDLLGRSGRLDEA 378

Query: 345 QCVFDHMD-KRDVVSWNSLISSYGVH 369
           + +   M  K   V W +L+ +  +H
Sbjct: 379 KELIKKMPMKPSAVIWGALLKACWIH 404



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 111/221 (50%), Gaps = 21/221 (9%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYEL-------LLLSCTHHNSLSDALNVHSHLT 107
           LI  L + G   Q+++ LS+        +EL       LL +C +  +L     +H ++ 
Sbjct: 191 LISGLVEAG---QSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVL 247

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR--RRTIYVWNALFRALTLAGRGEEV 165
           +NG D D  +   L+N+Y     +++A  VF K +  ++ +Y+W A+     + GRG E 
Sbjct: 248 NNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEA 307

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV-LRHGYNGIVHI 224
           LE + RM     GIR +  T+T VL+AC   S G  L++ GKE+  S+   +  N  +  
Sbjct: 308 LEWFNRMR--REGIRPNSITFTAVLRAC---SYG-GLVEEGKELFKSMKCFYNVNPSIEH 361

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-ACY 263
              ++D+  R G +  A  +  +M +K + V W A++ AC+
Sbjct: 362 YGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACW 402


>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
          Length = 1056

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/635 (35%), Positives = 355/635 (55%), Gaps = 30/635 (4%)

Query: 48   SSRNKNELIQSLCKQGNLRQALDVLS-IEPNPTQHTYELL--LLSCTHHNSLSDALNVHS 104
            S+ + +  +++L + G  ++++ +L    P+P  H   L   ++SC   +  +    +H+
Sbjct: 432  STESWSARVRTLTRLGRHKESIALLRHGGPSPPPHALALPASVISCAALSLPTGVAQIHA 491

Query: 105  HLTDNGF--DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI------YVWNALFRAL 156
                 G     D +L++ L+  YS    +  A  + D+T   +         +N+L    
Sbjct: 492  LAAKRGLLPAADAYLLSALLTAYSRLGCLRLAHQLLDETPIESTSHTTLRTAFNSLISGC 551

Query: 157  TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216
                       L+RRM      +R D  T   ++ A   S           ++HA   + 
Sbjct: 552  ARHSLPVACFALFRRMRAIA--VRFDAVTLLALVPAAPLSVV--------PQVHALAAQV 601

Query: 217  GYNGIVHIMTTLIDMYARFGC--VMYAGFVFSQM--AVKNVVSWSAMIACYARNGMAFEA 272
            G      +   L+  YAR G      A  VF +M  A +++VSW+A+++ +A+NG+A +A
Sbjct: 602  GLATETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDA 661

Query: 273  LELFREM-IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVS 329
            L+L+R M   E   + P++VT+V VL + A L A   G     Y+++R  G  + + + +
Sbjct: 662  LDLYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDAEHYVVQRLPGFRTNVQLCN 721

Query: 330  ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
            AL+  +ARCG L   Q +FD M  + +VSW +LI+ +G+HG GG A+ +F+ M+  G+ P
Sbjct: 722  ALINFHARCGSLPRAQQLFDEMPAKSIVSWTALITGHGMHGNGGVAVSLFERMVSEGIHP 781

Query: 390  SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
              ++ V VL ACSHAGL +EG+M F +M   + +RP++EHY C+VDLLGRA +LEEA ++
Sbjct: 782  DNVAMVGVLSACSHAGLYDEGRMYFSTMESVYKLRPTLEHYTCIVDLLGRAGRLEEAREL 841

Query: 450  IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
            I  + +     VWG+LLG+C+IH NVE+ E A  R+ ELEP N G YVL++++Y      
Sbjct: 842  ISSMPMPADGAVWGALLGACKIHKNVEIGEEAFARVVELEPRNVGYYVLMSNIYTDTGQL 901

Query: 510  DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569
            D V RV+ ++  RGL+K PG S +E   +++ F++ D  HPQ  +++ L+  L   +KEK
Sbjct: 902  DCVARVRAVMRKRGLKKEPGCSYVEHNGRVHLFMADDHSHPQARRIYELVTRLELMVKEK 961

Query: 570  GYVPQTKVVLYD--LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHS 627
              V ++ V +    ++ E  + +V  HSEKLAVAFGL+NT  G  I + KNLR+C DCHS
Sbjct: 962  SGVRESVVAVPKGRMEKEAAQPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHS 1021

Query: 628  FTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            F K +S   N+  LVRD +RFH F  GVCSC DYW
Sbjct: 1022 FLKAVSATTNRSFLVRDASRFHRFDGGVCSCKDYW 1056


>gi|302765350|ref|XP_002966096.1| hypothetical protein SELMODRAFT_84620 [Selaginella moellendorffii]
 gi|300166910|gb|EFJ33516.1| hypothetical protein SELMODRAFT_84620 [Selaginella moellendorffii]
          Length = 598

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/583 (37%), Positives = 340/583 (58%), Gaps = 13/583 (2%)

Query: 81  HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDK 140
             Y  LL  C +  +L D   VH HL   G++ + FL   L+ +Y    S+DDA   FD 
Sbjct: 28  EAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKCSSIDDAALAFDS 87

Query: 141 TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200
            R++ ++ WN +  A    G  +  + +++ M      I+ +R T+  VL A +      
Sbjct: 88  IRKKDLFSWNIMIAAFAENGCLDRAVAVFQLMEPAR--IKRNRGTFVAVLAAGLD----- 140

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
             L+ GK+IH SV   G      + T L+ MY   G    A  VF Q+   ++V W+AMI
Sbjct: 141 --LEQGKKIHDSVHSSGLERNEMVATALLSMYGACGSTDDARQVFEQVPKLDLVCWNAMI 198

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
             Y +N     ALE+F  + ME   +  N VT ++ L ACA LA   +G+ +H  +   G
Sbjct: 199 TAYVQNDQGRGALEVFHRLEMEG--VKCNEVTYLAALDACACLAVQSEGRSLHKRVSEAG 256

Query: 321 LD-SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           L  +   V ++LV MY + G LE  + +F+ M  RD+ SWN L++ YG +G G  A+  F
Sbjct: 257 LLLTSFKVANSLVNMYGKSGNLEAAEEIFESMPSRDISSWNVLMTVYGHNGLGDLAVDRF 316

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
            E    G  P  I+F++VL ACSHAGL++ G  L  S++++  I P+  HY C+VDLLGR
Sbjct: 317 TESCLEGFEPDSITFLAVLQACSHAGLLDTGVELLVSIQEDWGIDPTQYHYLCVVDLLGR 376

Query: 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499
           + +L +A  +I ++  EP    W SLLG CR++ +V   ERA++RL  +   ++  YVL+
Sbjct: 377 SGELVKAEALINNMPFEPEEGAWRSLLGGCRVNSDVGRGERATQRLLVM-SEDSSPYVLM 435

Query: 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALL 559
           A++YA+   +D  +R++ ++  R ++K PG S IEV+ ++++F + D+ H + E+++A L
Sbjct: 436 ANIYASIRNFDLAERLRSVMADRNVKKQPGLSWIEVRGRIHTFAANDKLHARKEEIYAGL 495

Query: 560 INLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNL 619
             L  E++ +GY P T+V LYD++ E+K R++L H EKLA+ FGL++T  G  + + KNL
Sbjct: 496 DRLFVELQREGYRPDTRVALYDVEEEKKVRMLLHHGEKLAIMFGLMSTPDGSPLFVLKNL 555

Query: 620 RLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+C DCH+ TK I+K   ++I++RD +RFHHF NG CSC DYW
Sbjct: 556 RVCADCHAATKIIAKITKRKIVMRDASRFHHFENGKCSCCDYW 598



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 89/169 (52%), Gaps = 6/169 (3%)

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
            C N+    ++L+ CA    L  GK +H ++ R G ++   + + LV MY +C  ++   
Sbjct: 23  FCSNTEAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKCSSIDDAA 82

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
             FD + K+D+ SWN +I+++  +G   +A+ +F+ M    +  +  +FV+VL     AG
Sbjct: 83  LAFDSIRKKDLFSWNIMIAAFAENGCLDRAVAVFQLMEPARIKRNRGTFVAVLA----AG 138

Query: 406 L-VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           L +E+GK + +S+    + R  +   A ++ + G     ++A ++ E +
Sbjct: 139 LDLEQGKKIHDSVHSSGLERNEMVATA-LLSMYGACGSTDDARQVFEQV 186


>gi|297805646|ref|XP_002870707.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316543|gb|EFH46966.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 517

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/522 (37%), Positives = 322/522 (61%), Gaps = 11/522 (2%)

Query: 144 RTIYVWNALFRALTLAGRG--EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
           R +  WN+L      AGRG   +  E+  RM  +  G R +  T+  ++ ACV       
Sbjct: 4   RDLVAWNSLISGY--AGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNK-- 59

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
             + G  IH  V++ G    V ++  L+++Y + G ++ +  +F  ++VKN+VSW+ MI 
Sbjct: 60  --EEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIV 117

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            + +NG+A E L  F   +     L P+  T ++VL+ C  +  +   + IHG I+  G 
Sbjct: 118 IHLQNGLAEEGLAYFN--MSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGF 175

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
           ++   + +AL+ +YA+ G+LE    VF  +   D ++W +++++Y  HGYG  AI+ F+ 
Sbjct: 176 NANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFEL 235

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M+++G+SP  ++F  +L ACSH+GLVEEG+  FE+M K + I P ++HY+CMVDL+GR+ 
Sbjct: 236 MVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSG 295

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
            L++A  +I+++ +EP   VWG+LLG+CR++ + +L  +A+KRLFELEP +  NY++L++
Sbjct: 296 LLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSN 355

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +Y+A+ +W +  R++ L++ +GL +  G S IE   K++ FV  D  HP+ E++   L  
Sbjct: 356 IYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKE 415

Query: 562 LSAEMK-EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
           +  +MK E G+  +T+ VL+D+D + KE ++  HSEK+A+AFGL+  S  E I I KNLR
Sbjct: 416 IRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLR 475

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCH   K IS    + I++RD  RFHHF  G CSC DYW
Sbjct: 476 ICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 517



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 140/297 (47%), Gaps = 15/297 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N LI     +G L +  +VLS      +   P + T+  ++ +C H  +  + + +H  +
Sbjct: 10  NSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLV 69

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
             +G  ++  +V  L+N+Y     +  +  +F+    + +  WN +       G  EE L
Sbjct: 70  MKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGL 129

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
             +        G++ D+ T+  VL+ C     G   L  G  IH  ++  G+N    I T
Sbjct: 130 AYFNM--SRWVGLKPDQATFLAVLRVC--EDIGVVRLSQG--IHGLIMFCGFNANTCITT 183

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+D+YA+ G +  +  VF ++   + ++W+AM+A YA +G   +A++ F  M+   + L
Sbjct: 184 ALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMV--HYGL 241

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLE 342
            P+ VT   +L AC+    +E+G+     + +R  ++  L   S +V +  R G L+
Sbjct: 242 SPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQ 298



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 114/230 (49%), Gaps = 12/230 (5%)

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M  +++V+W+++I+ YA  G   +  E+   M+       PN VT +S++ AC      E
Sbjct: 1   MPERDLVAWNSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKE 60

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
           +G  IHG +++ G+   + VV+AL+ +Y + G L     +F+ +  +++VSWN++I  + 
Sbjct: 61  EGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHL 120

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE-----EGKMLFESMRKEHM 422
            +G   + +  F    + G+ P   +F++VL  C   G+V       G ++F        
Sbjct: 121 QNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTC 180

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           I  +      ++DL  +  +LE+++ +  ++   P    W ++L +   H
Sbjct: 181 ITTA------LLDLYAKLGRLEDSSTVFLEI-TSPDSMAWTAMLAAYATH 223



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 51/229 (22%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
            P Q T+  +L  C     +  +  +H  +   GF+ +  + T L+++Y+    ++D+  
Sbjct: 141 KPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSST 200

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           VF +        W A+  A    G G + ++ +  M     G+  D  T+T++L AC  S
Sbjct: 201 VFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELM--VHYGLSPDHVTFTHLLNACSHS 258

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS- 255
                L++ G+                                   + F  M+ +  +  
Sbjct: 259 ----GLVEEGR-----------------------------------YYFETMSKRYRIEP 279

Query: 256 ----WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
               +S M+    R+G+  +A  L +EM ME     P+S    ++L AC
Sbjct: 280 RLDHYSCMVDLMGRSGLLQDAYGLIKEMPME-----PSSGVWGALLGAC 323


>gi|115440727|ref|NP_001044643.1| Os01g0819800 [Oryza sativa Japonica Group]
 gi|21104789|dbj|BAB93376.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534174|dbj|BAF06557.1| Os01g0819800 [Oryza sativa Japonica Group]
          Length = 646

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 237/628 (37%), Positives = 353/628 (56%), Gaps = 32/628 (5%)

Query: 56  IQSLCKQGNLRQALDVLS-IEPNPTQHTYEL--LLLSCTHHNSLSDALNVHSHLTDNGF- 111
           +++L + G  R+AL +L   +P+P  H   L   ++SC   +  S    +H+     G  
Sbjct: 30  VRTLTRLGRHREALALLRHGDPSPPPHALALPAAVISCAKLHLASGVAQIHALAAKRGLL 89

Query: 112 -DQDPFLVTKLINVYSHFDSVDDARHVFDK--------TRRRTIYVWNALFRALTLAGRG 162
              D +L++ L++ YS    +  AR + D+           RT +  N+L     L G  
Sbjct: 90  PSSDAYLLSALLSSYSRLRLLPLARQLLDELPLASTPPATARTAF--NSLISGCALHGVP 147

Query: 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV 222
                L+RRM     G+R D  T   ++          + L    ++HA   R G     
Sbjct: 148 AGCFSLFRRMR-VAAGVRFDAVTLLALVP--------VAPLGIVPQLHALAARSGLAANT 198

Query: 223 HIMTTLIDMYARFGC--VMYAGFVFSQM--AVKNVVSWSAMIACYARNGMAFEALELFRE 278
            +   L+ +YAR G      A  VF +M  A +++VSW+A+I+ +A+NG+A EA+EL+R 
Sbjct: 199 SVANCLVSVYARGGGGGASLARQVFEEMPRASRDLVSWNAVISAHAQNGLAVEAVELYRR 258

Query: 279 MI-MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMY 335
           M   E   + P++VT+V VL +CA   A   G  +  Y+     G    LP+ +AL+  +
Sbjct: 259 MRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVERYVRDTIPGFRDNLPLCNALINFH 318

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           ARCG L   Q +FD M +R VVSW +LI  YG+HG G  A+ +F+ M+    +P  ++ V
Sbjct: 319 ARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMV 378

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
            +L ACSHAG+ +EG+  F +M +++ +RP +EHY CMVDLLGRA +L+EA ++I  + +
Sbjct: 379 GLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPM 438

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
                VWG+LLG+C+IH NVE+ E A +R+  LEP N G YVL+A++YA A   D V +V
Sbjct: 439 AADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYYVLMANIYADAGQLDGVAKV 498

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT 575
           +  +  RGL+K PG S +E K K++ F++ D  HPQ  +++ L++ L   +KEK      
Sbjct: 499 RAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIYELVVELERMVKEKTGGDVV 558

Query: 576 KVVLYDLDAEEKERIVLG-HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
           +       AE     ++G HSEKLAVAFGL+NT  G  I + KNLR+C DCHSF K IS+
Sbjct: 559 EERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTISE 618

Query: 635 FANKEILVRDVNRFHHFRNGVCSCGDYW 662
             N+  LVRD +RFH F NG CSC DYW
Sbjct: 619 LTNRAFLVRDASRFHRFENGACSCRDYW 646


>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 556

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/585 (37%), Positives = 330/585 (56%), Gaps = 36/585 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  +L +CT   +      +HS +  +GF  + F+V+ L+++Y+    +  A  V
Sbjct: 8   PNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKV 67

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F++     +    AL                             D  +++ V  AC  + 
Sbjct: 68  FEEMPTLLLENLTAL-----------------------------DEVSFSSVFSACANAG 98

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L+ GK++H   L+ G   +V+I  +L DMY + G       +FS    ++VV+W+
Sbjct: 99  N----LEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWN 154

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
            MI  Y  N    +A   F   +M      P+  +  SVL +CA LAAL QG +IH  I+
Sbjct: 155 IMIMAYVYNHNYEDACNSF--WMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQII 212

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           R G    L V S+L+TMYA+CG L     +F+  + R+VV W ++I++   HG+    ++
Sbjct: 213 RSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVE 272

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F++M+  G+ P  I+FVSVL ACSH G VEEG   F SM K H I P  EHYAC+VDLL
Sbjct: 273 LFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLL 332

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            RA +L+ A + IE + I+P   VWG+LL +CR H N+ + +  + +LF+LEP N GNYV
Sbjct: 333 SRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYV 392

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL ++     M +E   V+R +E+ G++K PG S I++K   Y F   D+ H + ++++ 
Sbjct: 393 LLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIYE 452

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
           +L  L   +K+KGYV +T+  + +   E KE+ +  HSEK+A+AFGL++   G  IRI K
Sbjct: 453 MLEKLKELVKKKGYVAETEFAI-NTAEEYKEQSLWYHSEKIALAFGLLSLPAGAPIRIKK 511

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR C DCH+  KF S+   +EI+VRD+NRFHHF NG+CSCGDYW
Sbjct: 512 NLRTCGDCHTVMKFASEIFAREIIVRDINRFHHFTNGICSCGDYW 556



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 35/296 (11%)

Query: 177 TGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236
           +G+  + +T++ VL AC  ++       HG+++H+ V +HG+   V +++ L+DMYA+  
Sbjct: 4   SGVYPNHYTFSAVLSACTDTTASV----HGEQMHSLVWKHGFLAEVFVVSALVDMYAKCC 59

Query: 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296
            ++ A  VF +M                   +  E L    E            V+  SV
Sbjct: 60  DMLMAEKVFEEMPT-----------------LLLENLTALDE------------VSFSSV 90

Query: 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV 356
             ACA    LE GK +HG  L+ G+ +++ + ++L  MY +CG       +F +   RDV
Sbjct: 91  FSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDV 150

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           V+WN +I +Y  +     A   F  M   G  P   S+ SVL +C++   + +G ++   
Sbjct: 151 VTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQ 210

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           + +   ++ ++   + ++ +  +   L +A +I E+   +     W +++ +C+ H
Sbjct: 211 IIRSGFVK-NLRVASSLITMYAKCGSLVDAFQIFEETE-DRNVVCWTAIIAACQQH 264


>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
 gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
          Length = 438

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/438 (43%), Positives = 283/438 (64%), Gaps = 2/438 (0%)

Query: 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284
           + T++  +A+ G +  A  +F++     +  W+AMIA Y ++G + +A+ LF E++  + 
Sbjct: 3   LVTVLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELL--AR 60

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
            + PNSVT++ VL ACA+LAAL  GK +H      G+DS + V +A+V MY++CG L+  
Sbjct: 61  RIEPNSVTLMEVLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEA 120

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
              F  +++ D VSW ++++++  HG+  +A+  F+ M   G  P+ ++FV +L ACSH 
Sbjct: 121 VEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSHK 180

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           GLVEEG+  F+ M   + I P  +HYACMVDLLGRA  L+EA   +  +   P   V  S
Sbjct: 181 GLVEEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLNRMPGAPHAAVLKS 240

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +CR + +V+  ER +KR+ E     +  YV+LA +Y AA  W+E  R++ L+  RG+
Sbjct: 241 LLSACRSYKDVDRGERIAKRMLESFWDESMPYVVLASIYRAAGKWEEAARIRSLMVERGV 300

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +K PGRS IEV+ +++ FV+ D  H Q   + A L  LS+ MKE GYVP T +VL+D+  
Sbjct: 301 RKDPGRSAIEVEGRVFEFVAGDMSHVQMNPIRAKLQELSSAMKEAGYVPDTSLVLHDVAE 360

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
           EEKE+++L HSEKLAVAFGL+NT  G  IR+ KNLR+C+DCH   K IS    + I+ RD
Sbjct: 361 EEKEQVLLWHSEKLAVAFGLLNTPAGSPIRVIKNLRVCKDCHDAAKLISAIEQRRIVFRD 420

Query: 645 VNRFHHFRNGVCSCGDYW 662
           ++RFHHF NGVCSCGDYW
Sbjct: 421 LSRFHHFENGVCSCGDYW 438



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 147/347 (42%), Gaps = 55/347 (15%)

Query: 121 LINVYSHFDSVDD---ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177
           L+ V S F  V +   A  +F +T R  I+ WNA+  A    G   + + L+  +     
Sbjct: 3   LVTVLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDEL--LAR 60

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
            I  +  T   VL AC +     + L+ GK +HA    HG +  V + T ++DMY++ GC
Sbjct: 61  RIEPNSVTLMEVLDACAS----LAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCGC 116

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           +  A   F+++   + VSW+AM+A +A++G    AL  F+ M  + H   PN VT V +L
Sbjct: 117 LDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHK--PNYVTFVHLL 174

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
            AC+    +E+G        R+  D           M AR G               D  
Sbjct: 175 SACSHKGLVEEG--------RKYFD----------LMTARYGIAP------------DAQ 204

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG----KML 413
            +  ++   G  GY  +A      M     +P      S+L AC     V+ G    K +
Sbjct: 205 HYACMVDLLGRAGYLDEAEDFLNRM---PGAPHAAVLKSLLSACRSYKDVDRGERIAKRM 261

Query: 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
            ES   E M       Y  +  +   A K EEAA+ I  L +E G +
Sbjct: 262 LESFWDESM------PYVVLASIYRAAGKWEEAAR-IRSLMVERGVR 301



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 123/311 (39%), Gaps = 52/311 (16%)

Query: 53  NELIQSLCKQGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N +I +  + G+ RQA+ +        IEPN    T   +L +C    +L D   VH+  
Sbjct: 35  NAMIAAYVQHGDSRQAIRLFDELLARRIEPNSV--TLMEVLDACASLAALRDGKRVHAIA 92

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
            D+G D +  + T ++++YS    +D+A   F +  R     W A+  A    G  +  L
Sbjct: 93  RDHGVDSEVAVATAIVDMYSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRAL 152

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
             ++RM   G   + +  T+ ++L AC                        + G+V    
Sbjct: 153 ATFQRMQEQGH--KPNYVTFVHLLSAC-----------------------SHKGLVEEGR 187

Query: 227 TLID-MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
              D M AR+G               +   ++ M+    R G   EA +    M      
Sbjct: 188 KYFDLMTARYGI------------APDAQHYACMVDLLGRAGYLDEAEDFLNRM-----P 230

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
             P++  + S+L AC +   +++G+ I   +L    D  +P V  L ++Y   GK E   
Sbjct: 231 GAPHAAVLKSLLSACRSYKDVDRGERIAKRMLESFWDESMPYV-VLASIYRAAGKWEEAA 289

Query: 346 CVFDHMDKRDV 356
            +   M +R V
Sbjct: 290 RIRSLMVERGV 300


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/550 (36%), Positives = 331/550 (60%), Gaps = 11/550 (2%)

Query: 116 FLVTKLIN--VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALT-LAGRGEEVLELYRRM 172
           F ++K++     S F +++ AR VF +     I+ WN+L +  + +    +E + L++++
Sbjct: 23  FALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKL 82

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
             TG  +  + FT  +VLKAC   +        G ++H+ VL+ G+   + + T+L++ Y
Sbjct: 83  TETGYPV-PNSFTLAFVLKACAIVTA----FGEGLQVHSHVLKDGFGSSLFVQTSLVNFY 137

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
            +   + +A  VF +M V+N+V+W+AMI+ +AR G   EA+ELFREM  +   + P+++T
Sbjct: 138 GKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREM--QKAGIQPDAMT 195

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           +VSV+ ACA   AL+ G  +H YI +  + + L + +ALV MYA+CG +E  + VF HM 
Sbjct: 196 LVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMP 255

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
            +D  +W+S+I  +  HG    AI  F++M+   V+P  ++F++VL AC+H GLV  G+ 
Sbjct: 256 VKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRR 315

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
            F S+  E  I PSVEHY C VDLL R+  +EEA +I   ++I P    W SLL  C+  
Sbjct: 316 -FWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKK 374

Query: 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
             + L E  ++ L ELEP NA NY++++++Y++   W+++  ++++++ + ++ VPG S 
Sbjct: 375 KLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSS 434

Query: 533 IEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVL 592
           IEV   ++ FV  D+ HP+ + L   +  +S  +++ GY P    VL+ +  EEKE  + 
Sbjct: 435 IEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSGYRPSISDVLHKVVDEEKECALS 494

Query: 593 GHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652
            HSE+ A+A+GL+ T     IR+ KNLR+C DCH   K ISK   +EI+VRD  RFH F 
Sbjct: 495 EHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKIISKLYEREIIVRDRVRFHKFI 554

Query: 653 NGVCSCGDYW 662
            G CSC D+W
Sbjct: 555 KGTCSCKDFW 564



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 143/289 (49%), Gaps = 9/289 (3%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P P   T   +L +C    +  + L VHSH+  +GF    F+ T L+N Y   + +  AR
Sbjct: 88  PVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFAR 147

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            VF++   R +  W A+       G  +E +EL+R M     GI+ D  T   V+ AC  
Sbjct: 148 KVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQ--KAGIQPDAMTLVSVVSACAV 205

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
           +      L  G  +HA + ++     + + T L+DMYA+ GC+  A  VF  M VK+  +
Sbjct: 206 AGA----LDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTA 261

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           WS+MI  +A +G+A +A++ F++M+    ++ P+ VT ++VL ACA    + +G+     
Sbjct: 262 WSSMIMGFAYHGLAQDAIDAFQQML--ETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSL 319

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLI 363
           +L  G++  +      V +  R G +E    +   M    +  +W SL+
Sbjct: 320 MLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLL 368


>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 651

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/562 (38%), Positives = 332/562 (59%), Gaps = 11/562 (1%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDK-TRRRTIYVWN 150
           NS++    +HSH+  NG    P +   L+     S   S+  A+ +FD+     +   WN
Sbjct: 16  NSMNKLRKIHSHVIINGLHHHPSIFNHLLRFCAVSVNGSLSYAQLLFDRFDSDPSTSAWN 75

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
            L R  +++      +  Y RM  +    R D FT+++ LKAC        L+    E+H
Sbjct: 76  YLIRGFSISSSPLYTILYYNRMLLSSVS-RPDIFTFSFALKACER----IRLIPKCLELH 130

Query: 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAF 270
            SV+R G+     + T L+  Y+  G V  A  VF +M V+++VSW+AMI+C++  G+  
Sbjct: 131 GSVIRSGFLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAGLHH 190

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
           +A  ++  M  E   +C ++ T+V++L +CA ++AL  G M+H        +S + V +A
Sbjct: 191 QAFSMYSRMANEG--VCVDAYTIVALLSSCAHVSALNMGVMLHRIACDIRCESSVFVCNA 248

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           L+ MYA+CG LE    VF  M KRDV++WNS+I  YGVHG+G +AI  F++M+  GV P+
Sbjct: 249 LIDMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPN 308

Query: 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450
            ++F+ +L  CSH GLV+EG   FE M  +  + P+V+HY CMVDL GRA +LE+A ++I
Sbjct: 309 AVTFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLFGRAGQLEKALEMI 368

Query: 451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWD 510
                   P +W +LLGSC+IH N+EL E A K+L +LE  NAG+YVL+  +Y+AA+   
Sbjct: 369 HTSSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQ 428

Query: 511 EVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKG 570
               +++L+ +  L+ +PG S IE+  +++ FV  D+ HP+   +++ L  +       G
Sbjct: 429 GFASMRKLIRSHDLRTIPGWSWIEIGDQVHKFVIDDKMHPESALIYSELGEVINRAILAG 488

Query: 571 YVPQ-TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
           Y P+ +    + L     E     HSEKLA+A+GL+ T+ G T+RITKNLR+C DCHSFT
Sbjct: 489 YKPEDSNRTAHTLSDRCLESADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFT 548

Query: 630 KFISKFANKEILVRDVNRFHHF 651
           K++SK  N+EI+VRD  RFH F
Sbjct: 549 KYVSKAFNREIIVRDRVRFHQF 570



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 138/303 (45%), Gaps = 14/303 (4%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           +LS    P   T+   L +C     +   L +H  +  +GF  D  + T L+  YS   S
Sbjct: 98  LLSSVSRPDIFTFSFALKACERIRLIPKCLELHGSVIRSGFLADAIVSTNLVRCYSANGS 157

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           V+ A  VFD+   R +  WNA+    + AG   +   +Y RM   G  +  D +T   +L
Sbjct: 158 VEIASKVFDEMPVRDLVSWNAMISCFSHAGLHHQAFSMYSRMANEGVCV--DAYTIVALL 215

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
            +C       S L  G  +H           V +   LIDMYA+ G +  A  VF  M  
Sbjct: 216 SSCAH----VSALNMGVMLHRIACDIRCESSVFVCNALIDMYAKCGSLENAVGVFKGMRK 271

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310
           ++V++W++MI  Y  +G   EA+  FR+M+  +  + PN+VT + +L  C+    +++G 
Sbjct: 272 RDVLTWNSMIIGYGVHGHGVEAISFFRKMV--ASGVRPNAVTFLGLLLGCSHQGLVKEG- 328

Query: 311 MIHGYILRRGLDSILPVV---SALVTMYARCGKLELG-QCVFDHMDKRDVVSWNSLISSY 366
            +  + +      + P V     +V ++ R G+LE   + +       D V W +L+ S 
Sbjct: 329 -VEHFEIMSSQFHLTPNVKHYGCMVDLFGRAGQLEKALEMIHTSSCHEDPVLWRTLLGSC 387

Query: 367 GVH 369
            +H
Sbjct: 388 KIH 390


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/585 (35%), Positives = 331/585 (56%), Gaps = 44/585 (7%)

Query: 79  TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF 138
           T +T+  +L +C+    +     +H  +      +  F+   L N+Y+   ++D AR +F
Sbjct: 154 TDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLF 213

Query: 139 DKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198
           D+   + +  WN++       G+ E   +L+  M  +G  +  D+ T + +L A      
Sbjct: 214 DRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSG--LMPDQVTISNILSA------ 265

Query: 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258
                                            Y + G +  A   F ++  K+ V W+ 
Sbjct: 266 ---------------------------------YFQCGYIDEACKTFREIKEKDKVCWTT 292

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           M+   A+NG   +AL LFREM++E  ++ P++ T+ SV+ +CA LA+L QG+ +HG  + 
Sbjct: 293 MMVGCAQNGKEEDALLLFREMLLE--NVRPDNFTISSVVSSCARLASLCQGQAVHGKAVI 350

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
            G+D  L V SALV MY++CG+      VF  M  R+V+SWNS+I  Y  +G   +A+ +
Sbjct: 351 FGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALAL 410

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
           ++EM++  + P  I+FV VL AC HAGLVE G+  F S+ K H + P+ +HY+CM++LLG
Sbjct: 411 YEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLG 470

Query: 439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVL 498
           RA  +++A  +I+ +  EP   +W +LL  CRI+C+V   E A++ LFEL+P NAG Y++
Sbjct: 471 RAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIM 530

Query: 499 LADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHAL 558
           L+++YAA   W +V  V+ L++   ++K    S IE+  +++ FV+ D  H + EQ++  
Sbjct: 531 LSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEE 590

Query: 559 LINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGET-IRITK 617
           L  L  +++E G+ P T +VL+D+  EEK   +  HSEKLA+AF LI    G T IRI K
Sbjct: 591 LNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMK 650

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           N+R+C DCH F KF+SK   + I++RD+NRFHHF  G CSC D W
Sbjct: 651 NIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/592 (35%), Positives = 336/592 (56%), Gaps = 16/592 (2%)

Query: 78   PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
            P + T+   L +C   N+L   L +H      GF+    +   L+++YS    +++A  V
Sbjct: 468  PNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKV 527

Query: 138  FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
            F     R++  WNA+      AG G   L  +  M       R D FT T +LKAC  SS
Sbjct: 528  FRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKAC--SS 585

Query: 198  CGFSLLKHGKEIHASVLRHGYN--GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
             G  ++  GK+IH  ++R G++      I  +L+D+Y + G +  A   F Q+  K ++S
Sbjct: 586  TG--MIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMIS 643

Query: 256  WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
            WS++I  YA+ G   EA+ LF+ +   S  +  +S  + S++   A  A L+QGK +   
Sbjct: 644  WSSLILGYAQEGDFVEAMGLFKRLQELSSQI--DSFVLSSIIGVFADFALLQQGKQMQAL 701

Query: 316  ILR--RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
            +++   GL++   V ++LV MY +CG ++  +  F  M  +DV+SW  +I+ YG HG G 
Sbjct: 702  VVKLPSGLET--SVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGK 759

Query: 374  KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
            KA+ IF +M+ H + P  + +++VL ACSH+G+++EG+ LF  + +   I+P VEHYAC+
Sbjct: 760  KAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACV 819

Query: 434  VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
            VDLLGRA +L+EA  +++ + I+P   +W +LL  CR+H ++EL +   K L  ++  N 
Sbjct: 820  VDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNP 879

Query: 494  GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
             NYV+++++Y  A  W+E    + L   +GLQK  G S +E++R+++ F S ++ HP   
Sbjct: 880  ANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHPLTL 939

Query: 554  QLHALLINLSAEMKEK-GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLIN---TSK 609
             +   L  +   ++E+ GYV   K  L+D+D E KE  +  HSEKLA+   L       K
Sbjct: 940  VIQETLKEVERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQK 999

Query: 610  GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
            G+TIR+ KNLR+C DCH F K +SK      +VRD  RFH F +G CSCGDY
Sbjct: 1000 GKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDY 1051



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 171/341 (50%), Gaps = 15/341 (4%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LI++Y        A  VFD    R +  W AL     L G     L L+  M     GI 
Sbjct: 410 LIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG--RQGIY 467

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            + FT++  LKAC       + L+ G +IH   L+ G+  +V +  +L+DMY++ G +  
Sbjct: 468 PNEFTFSTNLKACGL----LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINE 523

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF  M  ++++SW+AMIA Y   G    AL  F  M        P+  T+ S+L+AC
Sbjct: 524 AEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKAC 583

Query: 301 AALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           ++   +  GK IHG+++R G    S   +  +LV +Y +CG L   +  FD + ++ ++S
Sbjct: 584 SSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMIS 643

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV--SVLGACSHAGLVEEGKMLFES 416
           W+SLI  Y   G   +A+ +FK +    +S    SFV  S++G  +   L+++GK +   
Sbjct: 644 WSSLILGYAQEGDFVEAMGLFKRL--QELSSQIDSFVLSSIIGVFADFALLQQGKQMQAL 701

Query: 417 MRK-EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456
           + K    +  SV +   +VD+  +   ++EA K   +++++
Sbjct: 702 VVKLPSGLETSVSN--SLVDMYLKCGLVDEAEKCFAEMQLK 740



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 7/284 (2%)

Query: 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           LIDMY +    + A  VF  M  +NVVSW+A+++ +  NG    +L LF EM  +   + 
Sbjct: 410 LIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQG--IY 467

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           PN  T  + L+AC  L ALE+G  IHG+ L+ G + ++ V ++LV MY++CG++   + V
Sbjct: 468 PNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKV 527

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF--VSVLGACSHAG 405
           F  M  R ++SWN++I+ Y   GYG +A+  F  M    +   P  F   S+L ACS  G
Sbjct: 528 FRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTG 587

Query: 406 LVEEGKMLFESMRKEHMIRPSVEHY-ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           ++  GK +   + +     PS       +VDL  +   L  A K  + ++ E     W S
Sbjct: 588 MIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIK-EKTMISWSS 646

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
           L+       +   A    KRL EL  +   ++VL + +   AD 
Sbjct: 647 LILGYAQEGDFVEAMGLFKRLQELS-SQIDSFVLSSIIGVFADF 689



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 154/301 (51%), Gaps = 12/301 (3%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF--DQDPFLVTKLINVYSHFDSV 131
           I+  P + T   LL +C+    +     +H  L  +GF       +   L+++Y    ++
Sbjct: 567 IKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNL 626

Query: 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK 191
             AR  FD+ + +T+  W++L       G   E + L++R+    + I S      +VL 
Sbjct: 627 FSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDS------FVLS 680

Query: 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
           + +     F+LL+ GK++ A V++        +  +L+DMY + G V  A   F++M +K
Sbjct: 681 SIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLK 740

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +V+SW+ MI  Y ++G+  +A+ +F +M+   H++ P+ V  ++VL AC+    +++G+ 
Sbjct: 741 DVISWTVMITGYGKHGLGKKAVSIFNKML--RHNIEPDEVCYLAVLSACSHSGMIKEGEE 798

Query: 312 IHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVH 369
           +   +L  +G+   +   + +V +  R G+L+  + + D M  K +V  W +L+S   VH
Sbjct: 799 LFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVH 858

Query: 370 G 370
           G
Sbjct: 859 G 859


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/594 (37%), Positives = 322/594 (54%), Gaps = 74/594 (12%)

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
           +C   ++L  A  VH   + +GFD D F+ + L+++Y   + + DA  VFD+     +  
Sbjct: 123 ACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVS 182

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGT------------------------------- 177
           W+AL  A    G  +E   L+  M  +G                                
Sbjct: 183 WSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMH 242

Query: 178 --GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235
             G   D  T + VL A          L  G  IH  V++ G      + + LIDMY + 
Sbjct: 243 LRGFEPDGTTISSVLPAV----GDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKC 298

Query: 236 GCVMYAGFVFSQM-----------------------------AVK------NVVSWSAMI 260
            C      VF QM                              +K      NVVSW++MI
Sbjct: 299 SCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMI 358

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           AC ++NG   EALELFREM +    + PNSVT+  +L AC  +AAL  GK  H + LRRG
Sbjct: 359 ACCSQNGRDMEALELFREMQIAG--VKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRG 416

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
           + + + V SAL+ MYA+CG+++  +  FD +  +++V WN++I+ Y +HG   +A++IF 
Sbjct: 417 ISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFD 476

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
            M   G  P  ISF  VL ACS +GL EEG   F SM  ++ I   VEHYACMV LL RA
Sbjct: 477 LMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRA 536

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            KLE+A  +I  + + P   VWG+LL SCR+H NV L E A+++LFELEP+N GNY+LL+
Sbjct: 537 GKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLS 596

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           ++YA+  MW+EV RV+ +++ +GL+K PG S IEVK K++  ++ D+ HPQ  Q+   L 
Sbjct: 597 NIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLD 656

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
            LS EMK+ GY P+   VL D++ ++KE+I+ GHSEKLAV FGL+NT  G  ++
Sbjct: 657 KLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQ 710



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 180/412 (43%), Gaps = 50/412 (12%)

Query: 67  QALDVLSIEPNPTQHTYELLLLSCTHHN--SLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           QAL +L    +  QHT    +L+C +    SLS     H+H+   G   D  L TKL++ 
Sbjct: 6   QALALL----DSVQHT----ILNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSH 57

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
           Y++     DA  V D      ++ ++ L  A +   +    L  + +M     G+  D  
Sbjct: 58  YANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQM--LTRGLMPDNR 115

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
                +KAC     G S LK  +++H      G++    + ++L+ MY +   +  A  V
Sbjct: 116 VLPSAVKACA----GLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRV 171

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREM------------------------- 279
           F +M   +VVSWSA++A YAR G   EA  LF EM                         
Sbjct: 172 FDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLY 231

Query: 280 --------IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
                    M      P+  T+ SVL A   L  L  G +IHGY++++GL S   V SAL
Sbjct: 232 SEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSAL 291

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MY +C        VFD MD  DV S N+ I     +G    ++++F+++   G+  + 
Sbjct: 292 IDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNV 351

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
           +S+ S++  CS  G   E   LF  M+    ++P+     C++   G    L
Sbjct: 352 VSWTSMIACCSQNGRDMEALELFREMQIAG-VKPNSVTIPCLLPACGNIAAL 402



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 13/242 (5%)

Query: 65  LRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124
           L + + +  ++PN    T   LL +C +  +L      H      G   D ++ + LI++
Sbjct: 373 LFREMQIAGVKPNSV--TIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDM 430

Query: 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF 184
           Y+    +  +R  FD    + +  WNA+     + G+ +E +E++  M  +G   + D  
Sbjct: 431 YAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQ--KPDII 488

Query: 185 TYTYVLKACVASSCGFSLLKHGKEIHASV-LRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           ++T VL AC  S     L + G     S+  ++G    V     ++ + +R G +  A  
Sbjct: 489 SFTCVLSACSQS----GLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYA 544

Query: 244 VFSQMAVK-NVVSWSAMI-ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
           +  +M V  +   W A++ +C   N ++    E+  E + E     P +  ++S + A  
Sbjct: 545 MIRRMPVNPDACVWGALLSSCRVHNNVSLG--EVAAEKLFELEPSNPGNYILLSNIYASK 602

Query: 302 AL 303
            +
Sbjct: 603 GM 604


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/553 (38%), Positives = 336/553 (60%), Gaps = 18/553 (3%)

Query: 116 FLVTKLIN--VYSHFDSVDDARHVFDKTRRRTIYVWNALFRA-LTLAGRGEEVLELYRRM 172
           FL++K+++    S F + D AR +F +     I+ +N++ R  L      +E + L++ M
Sbjct: 23  FLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDM 82

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
            G G     + FT  +VLKAC         L+ GK+IHA +LR G++   ++ ++L++ Y
Sbjct: 83  VGKGYP-NPNTFTMAFVLKACSI----IMALEEGKQIHAQILRSGFSSSPYVQSSLVNFY 137

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
           ++   +  A  VF ++  +N+V WSAM++ YAR GM  EAL +FREM  +   + P+ V+
Sbjct: 138 SKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREM--QVVGIEPDEVS 195

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           +V VL ACA + AL+ GK +H YI +R +   L + +AL+ MYA+CG +E  + +FD M 
Sbjct: 196 LVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMR 255

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
            +D  +W+S+I    +HG    A+ +F  M      P+ ++F+ +L AC+H GLV +GK 
Sbjct: 256 VKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKR 315

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA---AKIIEDLRIEPGPKVWGSLLGSC 469
            + SM  E  I PS+EHY CMVDLL R   ++EA   A II      P P +W +LL + 
Sbjct: 316 YWSSML-ELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPT----PDPVIWRTLLVAY 370

Query: 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPG 529
             +  ++ AE  + +L ELEP  A NY++LA++YA+    ++V  V+++++  G++ +PG
Sbjct: 371 TKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENGIKALPG 430

Query: 530 RSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKER 589
            + IEV   +++FV+ D  HP+ E++   L +++ ++   GY P   VVL+ ++ EEKE 
Sbjct: 431 CTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVSVVLHLVNDEEKEN 490

Query: 590 IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
           ++  HSE+LA+A+GL+ T    TIRI KNLR+C DCH  TK ISK  ++EI+VRD  RFH
Sbjct: 491 VLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFH 550

Query: 650 HFRNGVCSCGDYW 662
            F NG CSC DYW
Sbjct: 551 KFVNGTCSCKDYW 563



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 140/291 (48%), Gaps = 8/291 (2%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           PNP   T   +L +C+   +L +   +H+ +  +GF   P++ + L+N YS  + +  AR
Sbjct: 88  PNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIAR 147

Query: 136 HVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            VFD+   R +  W+A+       G   E L ++R M     GI  D  +   VL AC  
Sbjct: 148 KVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQ--VVGIEPDEVSLVGVLSACAM 205

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
                  L  GK +HA + +   +  + + T LI+MYA+ GC+  A  +F +M VK+  +
Sbjct: 206 VGA----LDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKA 261

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           WS+MI   A +G+A +AL +F    ME     PN VT + +L ACA    +  GK     
Sbjct: 262 WSSMIVGLAIHGLAEDALNVFSR--MEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSS 319

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366
           +L  G++  +     +V +  R G ++        +   D V W +L+ +Y
Sbjct: 320 MLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVIWRTLLVAY 370


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/646 (33%), Positives = 349/646 (54%), Gaps = 48/646 (7%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHN------------------ 94
           N L+    K G+L +A  V    P     ++ +L+  C  H                   
Sbjct: 73  NHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEMLKQGIQ 132

Query: 95  ----SLSDALN--------------VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
               S + A+N              +H+ L   GF       T L+++YS   S++++  
Sbjct: 133 PHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVK 192

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
            F+         WNA+  A     RG E L   ++M     GIR+   TY  ++ A    
Sbjct: 193 TFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKM--FLEGIRACSVTYITLMSAYDQP 250

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           S     LK  + IH  +LR G++    ++  +++MY + GC+  A  +F  M+  +V++W
Sbjct: 251 S----QLKSARYIHDCILRTGFD--QDVVNVILNMYGKCGCLQDAEAMFKSMSQPDVIAW 304

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           + MIA Y+++G   EAL  +   +M+   + P+  T VSV+ ACA L  +E GK +H  +
Sbjct: 305 NTMIAAYSQHGHTSEALRFYE--LMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRL 362

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
             R    +  + ++LV MY +CG L++ + +FD   K   V+WN++I +Y  H +  +A 
Sbjct: 363 GDRAF-QVTELANSLVNMYGKCGILDVARSIFDKTAK-GSVTWNAMIGAYAQHSHEQQAF 420

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           ++F  M   G  PS I+F+SVL AC++AGL EE    F  M+++H +RP   HY CMV+ 
Sbjct: 421 ELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGCMVES 480

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LG+A +L +A  +I+ +  EP    W S L +CR H +++  + A+K    ++P  +  Y
Sbjct: 481 LGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPEASTGY 540

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           V LA ++A A  + E  R+++L+  RG++K  GRS I++   +Y F + D+ +P+ +++ 
Sbjct: 541 VALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIF 600

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  L  EMK  GY P    V +D++A +KE ++  HSE+LA+AFG+I+TS+G  +RI 
Sbjct: 601 DELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSQGTPLRIM 660

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           KNLR+C DCH+ TK  SK   +EI+VRD NRFHHF+NG CSC D+W
Sbjct: 661 KNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 706



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 212/429 (49%), Gaps = 13/429 (3%)

Query: 50  RNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDN 109
           R  + L+    + G +  A+D L    +        ++ SC    +L++   +H  +   
Sbjct: 4   RRLSTLLSKRQQLGQIAAAIDALQKRKDADLKECVRVIQSCARLGALAEGRRIHQLIRRV 63

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           G   D ++   L+ +Y    S+++AR VF+ T  + ++ W  L       GR +E L L+
Sbjct: 64  GLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALF 123

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
             M     GI+    ++T  + AC   S G   L  G+ +HA + R+G+   V   T+L+
Sbjct: 124 YEM--LKQGIQPHSVSFTAAINAC---SAGPEFLPAGRALHALLRRYGFQDAVVATTSLV 178

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
            MY++ G +  +   F  M   N VSW+AMIA +A +    EAL   ++M +E    C  
Sbjct: 179 SMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRAC-- 236

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
           SVT ++++ A    + L+  + IH  ILR G D    VV+ ++ MY +CG L+  + +F 
Sbjct: 237 SVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQ--DVVNVILNMYGKCGCLQDAEAMFK 294

Query: 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409
            M + DV++WN++I++Y  HG+  +A++ ++ M   GV P   ++VSV+ AC+  G +E 
Sbjct: 295 SMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEV 354

Query: 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469
           GK +   +          E    +V++ G+   L+ A  I +  +   G   W +++G+ 
Sbjct: 355 GKQVHRRLGDRAF--QVTELANSLVNMYGKCGILDVARSIFD--KTAKGSVTWNAMIGAY 410

Query: 470 RIHCNVELA 478
             H + + A
Sbjct: 411 AQHSHEQQA 419



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 172/342 (50%), Gaps = 13/342 (3%)

Query: 190 LKACV--ASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
           LK CV    SC     L  G+ IH  + R G    V++   L+ MY + G +  A  VF 
Sbjct: 34  LKECVRVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFE 93

Query: 247 QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA- 305
               KNV SW+ +I   A++G + EAL LF EM+ +   + P+SV+  + + AC+A    
Sbjct: 94  ATPAKNVFSWTILITVCAQHGRSQEALALFYEMLKQG--IQPHSVSFTAAINACSAGPEF 151

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           L  G+ +H  + R G    +   ++LV+MY++CG LE     F+ M + + VSWN++I++
Sbjct: 152 LPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAA 211

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           +  H  G +A++  ++M   G+    +++++++ A      ++  + + + + +    + 
Sbjct: 212 FAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQD 271

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
            V     ++++ G+   L++A  + + +  +P    W +++ +   H +   A R  + L
Sbjct: 272 VVN---VILNMYGKCGCLQDAEAMFKSMS-QPDVIAWNTMIAAYSQHGHTSEALRFYE-L 326

Query: 486 FELEPTNAGNYVLLADVYAAADMWD-EV-KRVKRLLEARGLQ 525
            + E     +Y  ++ + A A + D EV K+V R L  R  Q
Sbjct: 327 MQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQ 368


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 230/603 (38%), Positives = 336/603 (55%), Gaps = 64/603 (10%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           VH     +G  +D F+   L+++Y+    ++DA  VF++ R + +  WNA+    +  GR
Sbjct: 253 VHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGR 312

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKA-------CVASS-----CG---------- 199
            E+ L L+ +M      I SD  T++ V+         C A       CG          
Sbjct: 313 FEDALSLFGKMREEK--IESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTL 370

Query: 200 FSLLK---------HGKEIHASVLRHGYNG-------IVHIMTTLIDMYARFGCVMYAGF 243
            SLL          HGKE H   ++    G        + ++  LIDMYA+   +  A  
Sbjct: 371 MSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARA 430

Query: 244 VFSQMAVKN--VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
           +F ++  K+  VV+W+ MI  YA++G A  AL+LF EM    + + PN  T+  VL ACA
Sbjct: 431 MFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACA 490

Query: 302 ALAALEQGKMIHGYILRRG-LDS-ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
            LAAL+ GK IH Y+LRR  +DS +L V + L+ MY++ G ++  Q VFD M KR+ VSW
Sbjct: 491 RLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSW 550

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
            SL++ YG+HG    A ++F EM    +    I+F+ VL ACSH+G+             
Sbjct: 551 TSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM------------- 597

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
           +  + P VEHYACMVDLLGRA +L EA ++I D+ IEP P VW +LL +CRIH N ELAE
Sbjct: 598 DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAE 657

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKM 539
            A+K+L EL+  N G Y LL+++YA A  W +V R+  L++  G++K+PG S ++ ++ M
Sbjct: 658 FAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGM 717

Query: 540 YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA 599
            +F   D  H Q ++++  L +L   +K           L+D+D EEK   +  HSEKLA
Sbjct: 718 ETFYVGDRTHLQSQKIYETLADLIKRIK-------ANFSLHDVDDEEKGDQLSEHSEKLA 770

Query: 600 VAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           +A+ ++    G  IRITKNLR+C D HS   +IS     EI++RD +RFH F+NG CSC 
Sbjct: 771 LAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCK 830

Query: 660 DYW 662
            YW
Sbjct: 831 GYW 833



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 136/495 (27%), Positives = 226/495 (45%), Gaps = 58/495 (11%)

Query: 38  LNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVL----SIEPNPTQHTYELLLLSCTHH 93
           L  + TP+  S    N+LI+      +   AL +     ++   P  +T+  +  +C   
Sbjct: 80  LEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEI 139

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI---YVWN 150
           ++     ++H  +   GF+ + F+   +I++Y    +V  AR VFD+   R I     WN
Sbjct: 140 SNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWN 199

Query: 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210
           ++    +        + L+R M   G GI  D      +L  C     G      G+++H
Sbjct: 200 SIVSVYSHCFVPNVAVSLFREMT-VGYGILPDTVGVVNILPVCGYLGLGLC----GRQVH 254

Query: 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAF 270
              +R G    V +   L+DMYA+ G +  A  VF +M  K+VV+W+AM+  Y++NG   
Sbjct: 255 GFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFE 314

Query: 271 EALELF---REMIMES-------------------------HDLC-----PNSVTMVSVL 297
           +AL LF   RE  +ES                           +C     PN VT++S+L
Sbjct: 315 DALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLL 374

Query: 298 QACAALAALEQGKMIHGYILRRGLD-------SILPVVSALVTMYARCGKLELGQCVFDH 350
            ACA++ AL  GK  H Y ++  L          L V++AL+ MYA+C  LE+ + +FD 
Sbjct: 375 SACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDE 434

Query: 351 M--DKRDVVSWNSLISSYGVHGYGGKAIQIFKEM--IYHGVSPSPISFVSVLGACSHAGL 406
           +    RDVV+W  +I  Y  HG    A+Q+F EM  I + + P+  +   VL AC+    
Sbjct: 435 ICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAA 494

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYA-CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
           ++ GK +   + +   I   V   A C++D+  ++  + + A+++ D   +     W SL
Sbjct: 495 LKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDV-DTAQVVFDSMSKRNAVSWTSL 553

Query: 466 LGSCRIHCNVELAER 480
           L    +H   E A R
Sbjct: 554 LTGYGMHGRSEDAFR 568



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 177/355 (49%), Gaps = 19/355 (5%)

Query: 75  EPNPTQHTYELLL-----LSCTHHNSLSDALNVHSHLTDNGFDQDPFL-VTKLINVYSHF 128
           +P    +T+ LLL     +S     +L+ A  +H     NG   + +  VT LI  Y   
Sbjct: 11  KPPLLINTHNLLLYHSSTISKQQCKTLTQAKLLHQQYIINGHLLNSYTNVTNLIYTYISS 70

Query: 129 DSVDDARHVFDKT---RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
           +S+ +A  + +K       ++Y WN L R           L L+RRM         D +T
Sbjct: 71  NSITNAILLLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHW--TPDHYT 128

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
           + +V KAC   S  F L   G  IH  V+R G+   V +   +I MY +   V++A  VF
Sbjct: 129 FPFVFKACGEIS-NFEL---GASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVF 184

Query: 246 SQMAVKNV---VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA 302
            ++  + +   V+W+++++ Y+   +   A+ LFREM +  + + P++V +V++L  C  
Sbjct: 185 DELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTV-GYGILPDTVGVVNILPVCGY 243

Query: 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362
           L     G+ +HG+ +R GL   + V +ALV MYA+CGK+E    VF+ M  +DVV+WN++
Sbjct: 244 LGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAM 303

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           ++ Y  +G    A+ +F +M    +    +++ SV+   +  G   E   +F  M
Sbjct: 304 VTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQM 358



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 14/158 (8%)

Query: 55  LIQSLCKQGNLRQALDVLS--------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSH- 105
           +I    + G+   AL + S        I PN    T   +L++C    +L     +H++ 
Sbjct: 448 MIGGYAQHGDANHALQLFSEMFKIDNCIVPN--DFTISCVLMACARLAALKFGKQIHAYV 505

Query: 106 LTDNGFDQDPFLVTK-LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164
           L  +  D D   V   LI++YS    VD A+ VFD   +R    W +L     + GR E+
Sbjct: 506 LRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSED 565

Query: 165 VLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
              ++  M      +  D  T+  VL AC  S   F +
Sbjct: 566 AFRVFDEMRKEALVL--DGITFLVVLYACSHSGMDFGV 601


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/603 (35%), Positives = 339/603 (56%), Gaps = 27/603 (4%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           +EPN    T+   L  C     L+D   +H  +  +   QD  L   L+N+Y   D + +
Sbjct: 107 VEPNVV--TFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVE 164

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR VF+  + R +  + A+  A   AG   E LEL+ RM+     I  + +T+  +L A 
Sbjct: 165 ARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKV-EAIEPNAYTFATILGAV 223

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                G   L+ G+++H  +   G++  V +   L+ MY + G  + A  VF  M  +NV
Sbjct: 224 E----GLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNV 279

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           +SW++MIA YA++G   EAL LF+ M     D+ P+ V+  S L ACA L AL++G+ IH
Sbjct: 280 ISWTSMIAAYAQHGNPQEALNLFKRM-----DVEPSGVSFSSALNACALLGALDEGREIH 334

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             ++   L S   + ++L++MYARCG L+  + VF+ M  RD  S N++I+++  HG   
Sbjct: 335 HRVVEAHLASP-QMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKK 393

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A++I++ M   G+    I+FVSVL ACSH  LV + +  F+S+  +H + P VEHY CM
Sbjct: 394 QALRIYRRMEQEGIPADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCM 453

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VD+LGR+ +L +A +++E +  +     W +LL  C+ H ++   ERA++++FEL P   
Sbjct: 454 VDVLGRSGRLGDAEELVETMPYQTDAVAWMTLLSGCKRHGDLNRGERAARKVFELAPAET 513

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ-- 551
             YV L+++YAAA  +D+ +RV++ +E RG+      S IE+  +++ F S      Q  
Sbjct: 514 LPYVFLSNMYAAAKRFDDARRVRKEMEERGVTTPVAVSYIEIDNELHMFTSGGRDEQQEG 573

Query: 552 -----FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA----EEKERIVLGHSEKLAVAF 602
                 E++ +LL+ L   MK+ GYVP T+ V  +       EEK+R +  HSE+LA+A+
Sbjct: 574 HDGRTMERVRSLLLELLEPMKQAGYVPDTREVYLEQQGGTSEEEKQRSLCFHSERLAIAY 633

Query: 603 GLI---NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           GLI   +      +R+  + R+C DCHS  K +S    K I VRD NRFHHF  G CSCG
Sbjct: 634 GLIAAKDPDDSRPLRVVNSHRVCSDCHSAIKLLSDIIEKTIFVRDGNRFHHFEKGACSCG 693

Query: 660 DYW 662
           D+W
Sbjct: 694 DHW 696



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 200/369 (54%), Gaps = 12/369 (3%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           L+ +CT   +L +   +H HL   GF  D  L T L+ +Y+   S+DDA+ VF+    + 
Sbjct: 16  LVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKD 75

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           ++ W+++  A   AGRGE  + LYRRM     G+  +  T+   L  C AS  G   L  
Sbjct: 76  LFAWSSIISAYARAGRGEMAVVLYRRM--IAEGVEPNVVTFACALGGC-ASVAG---LAD 129

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           G+ IH  +L         +  +L++MY +   ++ A  VF  M  +NV S++AMI+ Y +
Sbjct: 130 GRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQ 189

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G   EALELF  M  +   + PN+ T  ++L A   L  LE+G+ +H ++  RG D+ +
Sbjct: 190 AGEHAEALELFSRM-SKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNV 248

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +ALVTMY +CG     + VFD M  R+V+SW S+I++Y  HG   +A+ +FK M   
Sbjct: 249 VVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM--- 305

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
            V PS +SF S L AC+  G ++EG+ +   + + H+  P +E    ++ +  R   L++
Sbjct: 306 DVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLSMYARCGSLDD 363

Query: 446 AAKIIEDLR 454
           A ++   ++
Sbjct: 364 ARRVFNRMK 372



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 160/316 (50%), Gaps = 10/316 (3%)

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
           GI +D+F  T ++ AC         L+ G+ +H  ++  G+   + + T L+ MYA+ G 
Sbjct: 5   GIVADKFIVTSLVAACTK----LQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           +  A  VF  M +K++ +WS++I+ YAR G    A+ L+R MI E  +  PN VT    L
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVE--PNVVTFACAL 118

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
             CA++A L  G+ IH  IL   +     +  +L+ MY +C ++   + VF+ M  R+V 
Sbjct: 119 GGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVR 178

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416
           S+ ++IS+Y   G   +A+++F  M     + P+  +F ++LGA    G +E+G+ +   
Sbjct: 179 SYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRH 238

Query: 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE 476
           +         V   A +V + G+     EA K+ + +        W S++ +   H N +
Sbjct: 239 LASRGFDTNVVVQNA-LVTMYGKCGSPVEARKVFDSMTAR-NVISWTSMIAAYAQHGNPQ 296

Query: 477 LAERASKRLFELEPTN 492
            A    KR+ ++EP+ 
Sbjct: 297 EALNLFKRM-DVEPSG 311



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 103/174 (59%), Gaps = 1/174 (0%)

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
           ME   +  +   + S++ AC  L ALE+G+ +H +++  G  + +P+ +AL+ MYA+CG 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L+  + VF+ M+ +D+ +W+S+IS+Y   G G  A+ +++ MI  GV P+ ++F   LG 
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454
           C+    + +G+ + + +    + +  V   + ++++  + +++ EA K+ E ++
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDVLQDS-LLNMYLKCDEMVEARKVFEGMK 173


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/564 (38%), Positives = 321/564 (56%), Gaps = 40/564 (7%)

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
           SC   + L     +HS     G D + F+    I++Y+     DDA  +F++ + R +  
Sbjct: 21  SCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVS 80

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           WNA+      AG     ++++R +       + D  T   +L +             GK 
Sbjct: 81  WNAMISGFAHAGLFGRAMDVFRELVALQCP-KPDAGTMASILPSM------------GK- 126

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
                                   AR   +     VF +M  K ++SW+AM+A Y  N M
Sbjct: 127 ------------------------ARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEM 162

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
             EA+ELF  M M+   + P++VT+ +VL +C  ++AL  GK IH  I RR + S + + 
Sbjct: 163 HVEAVELF--MRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLE 220

Query: 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388
           +AL+ MYA CG L+  + VFD M  RDVVSW S+IS+YG HG+G +AI +F++M   G+ 
Sbjct: 221 NALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLE 280

Query: 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448
           P  I+FV++L ACSHAGL++ GK  F SM  E  I P +EHYACMVDLLGRA  + EA  
Sbjct: 281 PDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYD 340

Query: 449 IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508
            I  + I+P  +VWG+LLG+CRIH N+++   A+  L  L P   G YVLL+++YA A  
Sbjct: 341 FIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGR 400

Query: 509 WDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKE 568
           W +V  V+ ++E++G++K+PG S  E+  ++++F   D  HPQ + ++  L  L   ++E
Sbjct: 401 WADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIRE 460

Query: 569 KGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSF 628
            GY P+ +  L+D++ E+KE  +  HSEKLA+AF LINT+ G  IRIT NLR C DCH  
Sbjct: 461 MGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHA 520

Query: 629 TKFISKFANKEILVRDVNRFHHFR 652
            K IS  A +EI+++DVNR H+ +
Sbjct: 521 AKLISTIAGREIILKDVNRIHYMK 544



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 30/246 (12%)

Query: 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
           L P  + +    ++CAA   L  G+ IH    R GLD  + V  + ++MYARCG+ +   
Sbjct: 8   LLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAY 67

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVLGACSHA 404
            +F+ M  RDVVSWN++IS +   G  G+A+ +F+E++      P   +  S+L +   A
Sbjct: 68  QMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKA 127

Query: 405 GLVEEG--KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR---IEPGP 459
            + +    K +F+ MR + +I      +  M+ +        EA ++   ++   IEP  
Sbjct: 128 RVEDIALLKGVFDEMRFKGLIS-----WNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDA 182

Query: 460 KVWGSLLGSC----------RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
               ++L SC          RIH  ++     S  L E    NA     L D+YA     
Sbjct: 183 VTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLE----NA-----LMDMYANCGCL 233

Query: 510 DEVKRV 515
            E + V
Sbjct: 234 KEARDV 239



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 13/199 (6%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           IEP+    T   +L SC   ++LS    +H  +          L   L+++Y++   + +
Sbjct: 178 IEPDAV--TLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKE 235

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR VFD    R +  W ++  A    G G E ++L+ +M   G G+  D   +  +L AC
Sbjct: 236 ARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKM--CGQGLEPDSIAFVAILAAC 293

Query: 194 VASSCGFSLLKHGKEIHASVLR--HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
             S  G  LL  GK    S+    H    + H    ++D+  R GC+  A      M +K
Sbjct: 294 --SHAG--LLDMGKHYFYSMTSEFHIAPKLEHY-ACMVDLLGRAGCIREAYDFIMVMPIK 348

Query: 252 -NVVSWSAMI-ACYARNGM 268
            N   W A++ AC   + M
Sbjct: 349 PNERVWGALLGACRIHSNM 367


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/566 (36%), Positives = 339/566 (59%), Gaps = 13/566 (2%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
            VH+HL    + +   L+TKLI +     ++     +F        +++N++ ++ +   
Sbjct: 27  QVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLR 86

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
                +  YRRM    + +    +T+T V+K+C       S LK GK +H   +  G+  
Sbjct: 87  LPLHCVAYYRRM--LSSNVSPSNYTFTSVIKSCA----DLSALKIGKGVHCHAVVSGFGL 140

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
             ++   L+  Y++ G +  A  VF +M  K+VV+W+++++ + +NG+A +A+ +F +M 
Sbjct: 141 DTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMR 200

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
               +  P+S T VS+L ACA   A+  G  +H YI+  GLD  + + +AL+ +Y+RCG 
Sbjct: 201 ESGFE--PDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGD 258

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLG 399
           +   + VFD M + +V +W ++IS+YG HGYG +A+ +F +M    G  P+ ++FV+VL 
Sbjct: 259 VGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLS 318

Query: 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE--- 456
           AC+HAGLVE+G+ +++ M + + + P VEH+ C+VD+LGRA  L+EA + I+ L      
Sbjct: 319 ACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNA 378

Query: 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516
             P +W ++LG+C++H N +L    +KRL  LEP N G++V+L+++YA +   DEV  ++
Sbjct: 379 TAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSHIR 438

Query: 517 RLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTK 576
             +    L+K  G S IEV+ K Y F   DE H +  +++  L  L +  KE GY P ++
Sbjct: 439 DRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSE 498

Query: 577 VVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFA 636
            V++ ++ EEKE  +  HSEKLAVAFGL+ T     I + KNLR+CEDCHS  K+IS  +
Sbjct: 499 EVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-SAITVVKNLRICEDCHSAFKYISIVS 557

Query: 637 NKEILVRDVNRFHHFRNGVCSCGDYW 662
           N++I+VRD  RFHHF+NG CSC DYW
Sbjct: 558 NRQIIVRDKLRFHHFQNGSCSCLDYW 583



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 160/325 (49%), Gaps = 26/325 (8%)

Query: 71  VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS 130
           +LS   +P+ +T+  ++ SC   ++L     VH H   +GF  D ++   L+  YS    
Sbjct: 98  MLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGD 157

Query: 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190
           ++ AR VFD+   +++  WN+L       G  E+ + ++ +M    +G   D  T+  +L
Sbjct: 158 MEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMR--ESGFEPDSATFVSLL 215

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV 250
            AC A +   SL   G  +H  ++  G +  V + T LI++Y+R G V  A  VF +M  
Sbjct: 216 SAC-AQTGAISL---GSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKE 271

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC---PNSVTMVSVLQACAALAALE 307
            NV +W+AMI+ Y  +G   +A++LF +M     D C   PN+VT V+VL ACA    +E
Sbjct: 272 TNVAAWTAMISAYGTHGYGKQAVDLFNKM----EDDCGSIPNNVTFVAVLSACAHAGLVE 327

Query: 308 QGKMIHGYILRRGLDS--ILPVVS---ALVTMYARCGKLELGQCVFDHMDKRDVVS---- 358
            G+ ++    +R  +S  ++P V     +V M  R G L+        +D     +    
Sbjct: 328 DGRSVY----KRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAPAL 383

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMI 383
           W +++ +  +H      ++I K +I
Sbjct: 384 WTAMLGACKMHRNYDLGVEIAKRLI 408


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/627 (34%), Positives = 349/627 (55%), Gaps = 29/627 (4%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDAL 100
           ++ P   S  +   L++   + G L  A+ +    P     TY +LL        +++A 
Sbjct: 104 ASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEA- 162

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
                L D   D+D    T +++ Y     + +AR +FD+  +R +  W A+       G
Sbjct: 163 ---RKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNG 219

Query: 161 RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNG 220
           +     +L+  M         +  ++T +L   + +      ++  +++  ++  H    
Sbjct: 220 KVILARKLFEVMPD------RNEVSWTAMLVGYIQAGH----VEDAEDLFNAMPDHPVAA 269

Query: 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI 280
              +M      + + G V  A  +F +M  ++  +WSAMI  Y +N    EAL  FREM+
Sbjct: 270 CNAMMVG----FGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREML 325

Query: 281 MESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340
                + PN  + +S+L  CAALA  + G+ +H  +LR   D+ +  VSAL+TMY +CG 
Sbjct: 326 CRG--IRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGN 383

Query: 341 LELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
           L+  + VF+  + +DVV WNS+I+ Y  HG G +A+ IF ++    ++P  I+++ VL A
Sbjct: 384 LDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTA 443

Query: 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460
           CS+ G V+EG+ +F SM     IR    HY+CMVDLLGRA  ++EA  +I ++ +EP   
Sbjct: 444 CSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAI 503

Query: 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
           +WG+L+G+CR+H N E+AE A+K+L ELEP +AG YVLL+ +Y +   W++   +++ + 
Sbjct: 504 IWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFIS 563

Query: 521 ARGLQKVPGRSRIEVKRKMYSFVSVDEF-HPQFEQLHALLINLSAEMK----EKGYVPQT 575
           +R L K PG S IE  + ++ F S D   HP+    HA+++N+  E+     E GY    
Sbjct: 564 SRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPE----HAIILNMLEELDGLLMESGYSADG 619

Query: 576 KVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKF 635
             VL+D+D E+K + +  HSE+ AVA+GL+    G  IR+ KNLR+C DCHS  K I+K 
Sbjct: 620 SFVLHDVDEEQKAQSLRYHSERQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLITKI 679

Query: 636 ANKEILVRDVNRFHHFRNGVCSCGDYW 662
            ++EI++RD NRFHHF++G+CSC DYW
Sbjct: 680 TSREIILRDANRFHHFKDGLCSCRDYW 706



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 138/338 (40%), Gaps = 60/338 (17%)

Query: 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM--------NGTGTGIRS 181
           +++ AR  FD    RT   +NAL          +  L L+ RM        N    G+  
Sbjct: 32  NIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAGLSL 91

Query: 182 DRFTYTYVLKACVA-----SSCGFSLLKHGKEIHA--------------------SVLRH 216
            R T      A  +     S   F+ L  G   H                     +VL  
Sbjct: 92  RRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLG 151

Query: 217 GY-----------------NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
           G+                 +  V   T ++  Y + G +  A  +F +M  +NVVSW+AM
Sbjct: 152 GFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAM 211

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           I+ YA+NG    A +LF   +M   +    +  +V  +QA      +E  + +   +   
Sbjct: 212 ISGYAQNGKVILARKLFE--VMPDRNEVSWTAMLVGYIQA----GHVEDAEDLFNAM--- 262

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
             D  +   +A++  + + G ++  + +F+ M  RD  +W+++I  Y  + +  +A+  F
Sbjct: 263 -PDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTF 321

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           +EM+  G+ P+  SF+S+L  C+     + G+ L  +M
Sbjct: 322 REMLCRGIRPNYTSFISILTVCAALATADYGRELHAAM 359


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/603 (35%), Positives = 342/603 (56%), Gaps = 52/603 (8%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
           +H+HL  +G    P      +   +    +  AR +  + R  T+   N L RAL     
Sbjct: 36  IHAHLLVSGRLASPSHHADFVASLASSSHLSYARLLLPQ-RPATLLAHNGLLRALARGPC 94

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC-----------VASSCGFSLLKHGKEIH 210
                  +R +      +  D +++T++++A            V +    +LL     +H
Sbjct: 95  PGLAFAAFRELP-----LAPDHYSFTFLVRAATSLAAAASATPVPTDVAVNLL--AGSVH 147

Query: 211 ASVLRHGYNGIVHIMTTLIDMYARFGCV--MYAGF------------------------- 243
           A+  +HG+    H+ +  + MYA  G V  + A F                         
Sbjct: 148 AAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGGDVD 207

Query: 244 ----VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
               +F  M  ++ V+W+AM+  Y R G + EAL LF EM  +   +  + VT+VSVL A
Sbjct: 208 TARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEM--QKAGVAVSEVTLVSVLTA 265

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           CA + ALE+G  +H Y+  RG+   + + +ALV MY++CG + +   VF+ M +R++ +W
Sbjct: 266 CAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTW 325

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
            S +S   ++G G + +++FK M   G+ P+ ++FV+VL  CS AGLVEEG+  F+SM+ 
Sbjct: 326 TSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKD 385

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
           +H + P +EHY CMVDL GRA +L++A   I  + +EP   VWG+LL + RIH NV+L +
Sbjct: 386 KHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGK 445

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKM 539
            A  +L E+E  N   +VLL+++YA +  W  V +V+ +++++G++K+PG S IEV  K+
Sbjct: 446 HAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKV 505

Query: 540 YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA 599
           + F    + HP+++ +  +L  +S  ++ +GY   TK VL+D++ EEKE  +  HSEKLA
Sbjct: 506 HEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHSEKLA 565

Query: 600 VAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           +AFGLI   +   IRI KNLR+C+DCH +TK ISK  ++EI++RD NRFHHF++G CSC 
Sbjct: 566 LAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSCR 625

Query: 660 DYW 662
           DYW
Sbjct: 626 DYW 628



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 11/189 (5%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLS----CTHHNSLSDALNVHSHLTD 108
           N ++    + G  R+AL +            E+ L+S    C    +L   + VHS++  
Sbjct: 225 NAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCS 284

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G      L T L+++YS    V  +  VF+  R R IY W +    L + G GEE LEL
Sbjct: 285 RGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLEL 344

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL-RHGYNGIVHIMTT 227
           ++RM     G+  +  T+  VL+ C  +     L++ G+    S+  +H     +     
Sbjct: 345 FKRME--SAGMEPNGVTFVAVLRGCSVA----GLVEEGRACFDSMKDKHKVEPWLEHYGC 398

Query: 228 LIDMYARFG 236
           ++D+Y R G
Sbjct: 399 MVDLYGRAG 407


>gi|302770356|ref|XP_002968597.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
 gi|300164241|gb|EFJ30851.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
          Length = 631

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/592 (36%), Positives = 331/592 (55%), Gaps = 14/592 (2%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P      +  LL  C    SL D   +H+ + D G  +D FL   LI +Y    +++DAR
Sbjct: 49  PPSRVAAFASLLQQCGRSRSLPDGRRIHAEIVDTGLGKDLFLGNHLIQMYGKCGAMEDAR 108

Query: 136 HVFDKTRR-RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
            VF+K     ++  W A+     L GR +  L+ +R+M     G+R +  T+  +L AC 
Sbjct: 109 AVFEKIESPNSVVSWTAMISGFALHGREDLALDFFRKM--VAEGVRPNEVTFVSILGACA 166

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYN-GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
           A+      +KHG  IH  V    +    + + T LIDMY + G    A  VF +M  +++
Sbjct: 167 AAR----DVKHGTAIHELVESSEFGRSYLSVGTALIDMYGKCGRPELASRVFEKMERRDL 222

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V W+AMI   ++ G+  +AL LFR M +E H   P+ VT+V+ L+AC+ L +L  GK +H
Sbjct: 223 VVWNAMITVCSQQGLDEQALRLFRVMDLEGH--TPDEVTLVAALEACSNLNSLAAGKKLH 280

Query: 314 GYILRRGLDSILPVV--SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
             IL  GLDS + +V  +ALV MY R G+LE    VF+ M+  ++V+W +LI+++  HG 
Sbjct: 281 ELILDAGLDSSIKMVLATALVNMYGRYGQLEDALRVFEKMNHWNLVAWTALIAAFAQHG- 339

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
              AI +   M   GV    I F+SVL ACSHAG++E G   F+ M  +  +R    HY+
Sbjct: 340 DVHAIDLSWRMHLEGVQADDIVFLSVLHACSHAGVLEAGLSCFQGMVADFGVRGGAAHYS 399

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491
           CMVDLL R  ++ EA +++  +  EP      +LL +CR+  +     R ++    L P 
Sbjct: 400 CMVDLLARCGRVAEAEELLHSMPFEPAHMEMKTLLAACRVSGDTPRGARVARLASGLIPL 459

Query: 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVD-EFHP 550
           +A  YVL++  YAAA+ WDEV  V+  +   G++K  G S +EVK +++ F + +  +H 
Sbjct: 460 DAAPYVLMSHAYAAAEKWDEVAEVRERMAKLGVKKPRGWSCVEVKNRVHQFFAGNFSWHS 519

Query: 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKG 610
           +  ++   L  L A +KE GYVP T  + + +  ++KE ++  HSE++A+AFGL+    G
Sbjct: 520 EAAEIEVELRRLQAVVKEAGYVPDTGQIGHCVQEDDKEDLLALHSERVAIAFGLLRVPAG 579

Query: 611 ETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             I + KNLR+C DCH+  K IS+   + I+VRD  RFH F NG CSCGDYW
Sbjct: 580 LPIHVVKNLRVCSDCHAVAKIISRSVGRRIVVRDAYRFHRFENGTCSCGDYW 631



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 102/254 (40%), Gaps = 48/254 (18%)

Query: 53  NELIQSLCKQGNLRQALD---VLSIEPN-PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    +QG   QAL    V+ +E + P + T    L +C++ NSL+    +H  + D
Sbjct: 226 NAMITVCSQQGLDEQALRLFRVMDLEGHTPDEVTLVAALEACSNLNSLAAGKKLHELILD 285

Query: 109 NGFDQD--PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
            G D      L T L+N+Y  +  ++DA  VF+K     +  W AL  A    G     +
Sbjct: 286 AGLDSSIKMVLATALVNMYGRYGQLEDALRVFEKMNHWNLVAWTALIAAFAQHG-DVHAI 344

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           +L  RM+    G+++D   +  VL AC                HA VL  G       ++
Sbjct: 345 DLSWRMH--LEGVQADDIVFLSVLHACS---------------HAGVLEAG-------LS 380

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
               M A FG                   +S M+   AR G   EA EL   M  E    
Sbjct: 381 CFQGMVADFG------------VRGGAAHYSCMVDLLARCGRVAEAEELLHSMPFE---- 424

Query: 287 CPNSVTMVSVLQAC 300
            P  + M ++L AC
Sbjct: 425 -PAHMEMKTLLAAC 437


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/569 (37%), Positives = 336/569 (59%), Gaps = 13/569 (2%)

Query: 96  LSDALNVHSHLTDNGFDQDPF-LVTKLIN-VYSHFDSVDDARHVFDKTRRRTIYVWNALF 153
           +++   +H ++  +    DP  L T L++ V +  +S+  AR+VF +        +N + 
Sbjct: 1   MNNVYRLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTII 60

Query: 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213
           R+ +   R      L    +    GI  D FT+ +VLKAC       S L+    +H+ +
Sbjct: 61  RSHS---RFFPSHSLSYFFSMRSNGIPLDNFTFPFVLKAC-------SRLQINLHLHSLI 110

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEAL 273
           +++G    + +   LI +Y   G +  A  VF +M+ ++ VSWS +IA +  NG A EAL
Sbjct: 111 VKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEAL 170

Query: 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333
           +LF +M +E   + P+ VTM+SV+ A + L  LE G+ +  +I R G    + + +AL+ 
Sbjct: 171 DLFEKMQLED-KVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALID 229

Query: 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393
           M++RCG ++    VF+ M  R+V++W +LI+  G+HG   +A+ +F  M   GV P  ++
Sbjct: 230 MFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVT 289

Query: 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
           F  VL ACSH GLV+EG  +FES+RK + + P ++HY CMVD+LGRA  L EA   +E +
Sbjct: 290 FSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERM 349

Query: 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK 513
            ++P   +W +LLG+C  H N+ LAE+   ++ ++  +  G+ VLL++VY AA  W E  
Sbjct: 350 PMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKA 409

Query: 514 RVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVP 573
            ++  +  + + K PG S I V + ++ FVS D  HPQ E +   L ++  +++ +GY+ 
Sbjct: 410 SIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMM 469

Query: 574 QTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFIS 633
           QTK VL+D++ EE+E  +  HSEKLAVAF +++     TIRI KNLR+C DCHSF K IS
Sbjct: 470 QTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHIS 529

Query: 634 KFANKEILVRDVNRFHHFRNGVCSCGDYW 662
               ++I++RD NRFHHF  G+CSC DYW
Sbjct: 530 VRFERKIIIRDRNRFHHFEKGLCSCHDYW 558



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 106/251 (42%), Gaps = 46/251 (18%)

Query: 55  LIQSLCKQGNLRQALDV-----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDN 109
           +I S    G   +ALD+     L  +  P + T   ++ + +H   L     V + +   
Sbjct: 156 VIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRL 215

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           GF     L T LI+++S   S+D++  VF+K   R +  W AL   L + GR  E L ++
Sbjct: 216 GFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMF 275

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
             M    +G++ D  T++ VL AC        L+K G +I  S+ +      V+ M  L+
Sbjct: 276 HSMR--KSGVQPDYVTFSGVLVACSHG----GLVKEGWDIFESIRK------VYGMDPLL 323

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
           D Y   GC                     M+    R G+  EA +    M M+     PN
Sbjct: 324 DHY---GC---------------------MVDILGRAGLLNEAYDFVERMPMK-----PN 354

Query: 290 SVTMVSVLQAC 300
           S+   ++L AC
Sbjct: 355 SIIWRTLLGAC 365


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/618 (34%), Positives = 341/618 (55%), Gaps = 41/618 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T+  L  + +    L     +H  +       D F++  LIN Y    + D A  V
Sbjct: 171 PNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRV 230

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F     + +  WNA+  A  L G  ++ L L++ M      ++ +  T   VL AC    
Sbjct: 231 FTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKD--VKPNVITMVSVLSACAKKI 288

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L+ G+ I + +  +G+   + +   ++DMY + GC+  A  +F++M+ K++VSW+
Sbjct: 289 ----DLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWT 344

Query: 258 -------------------------------AMIACYARNGMAFEALELFREMIMESHDL 286
                                          A+I+ Y +NG    AL LF EM + S D 
Sbjct: 345 TMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQL-SKDA 403

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+ VT++  L A A L A++ G  IH YI +  ++    + ++L+ MYA+CG L     
Sbjct: 404 KPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAME 463

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF  ++++DV  W+++I +  ++G G  A+ +F  M+   + P+ ++F ++L AC+HAGL
Sbjct: 464 VFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGL 523

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V EG+ LFE M   + I P ++HY C+VD+ GRA  LE+AA  IE + I P   VWG+LL
Sbjct: 524 VNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALL 583

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
           G+C  H NVELAE A + L ELEP N G +VLL+++YA A  W++V  +++L+    ++K
Sbjct: 584 GACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKK 643

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            P  S I+V   ++ F+  D  HP  +++++ L  +S + K  GY P    +L  L  E+
Sbjct: 644 EPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLL-QLSEED 702

Query: 587 K--ERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRD 644
              E+ +  HSEKLA+AFGLI+T+  + IRI KN+R+C DCH+F K +S+  +++IL+RD
Sbjct: 703 NLMEQSLNVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRD 762

Query: 645 VNRFHHFRNGVCSCGDYW 662
             RFHHFR G CSC DYW
Sbjct: 763 RYRFHHFRGGKCSCLDYW 780



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 211/455 (46%), Gaps = 49/455 (10%)

Query: 102 VHSHLTDNGFDQDPFLVTKLINVY--SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
           +H+H+       DP+  +KL+  Y  S    +  A++VF++  +  +Y WN L R    +
Sbjct: 91  IHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASS 150

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
               +   ++  M  + +    ++FT+ ++ KA    +    +L  G  +H  V++   +
Sbjct: 151 SDPTQSFLIFLHMLHSCSEF-PNKFTFPFLFKA----ASRLKVLHLGSVLHGMVIKASLS 205

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             + I+ +LI+ Y   G    A  VF+ M  K+VVSW+AMI  +A  G+  +AL LF+EM
Sbjct: 206 SDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEM 265

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
            M+  D+ PN +TMVSVL ACA    LE G+ I  YI   G    L + +A++ MY +CG
Sbjct: 266 EMK--DVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCG 323

Query: 340 KLELGQCVFDHMDKRDVVS-------------------------------WNSLISSYGV 368
            +   + +F+ M ++D+VS                               WN+LIS+Y  
Sbjct: 324 CINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQ 383

Query: 369 HGYGGKAIQIFKEM-IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           +G    A+ +F EM +     P  ++ +  L A +  G ++ G  +   ++K H I  + 
Sbjct: 384 NGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKK-HDINLNC 442

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
                ++D+  +   L +A ++   +       VW +++G+  ++       +A+  LF 
Sbjct: 443 HLATSLLDMYAKCGNLNKAMEVFHAVE-RKDVYVWSAMIGALAMYGQ----GKAALDLFS 497

Query: 488 --LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520
             LE     N V   ++  A +    V   ++L E
Sbjct: 498 SMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFE 532



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 129/250 (51%), Gaps = 12/250 (4%)

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYA--RFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           K+IHA +LR       +  + L+  YA     C++YA  VF+Q+   N+  W+ +I  YA
Sbjct: 89  KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYA 148

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
            +    ++  +F  M+    +  PN  T   + +A + L  L  G ++HG +++  L S 
Sbjct: 149 SSSDPTQSFLIFLHMLHSCSEF-PNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSD 207

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           L ++++L+  Y   G  +L   VF +M  +DVVSWN++I+++ + G   KA+ +F+EM  
Sbjct: 208 LFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEM 267

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK----EHMI--RPSVEHY---ACMVD 435
             V P+ I+ VSVL AC+    +E G+ +   +      EH+I     ++ Y    C+ D
Sbjct: 268 KDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCIND 327

Query: 436 LLGRANKLEE 445
                NK+ E
Sbjct: 328 AKDLFNKMSE 337



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 111/237 (46%), Gaps = 14/237 (5%)

Query: 53  NELIQSLCKQGNLRQALDV-----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLT 107
           N LI +  + G  R AL +     LS +  P + T    L +     ++     +H ++ 
Sbjct: 375 NALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIK 434

Query: 108 DNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
            +  + +  L T L+++Y+   +++ A  VF    R+ +YVW+A+  AL + G+G+  L+
Sbjct: 435 KHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALD 494

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV-LRHGYNGIVHIMT 226
           L+  M      I+ +  T+T +L AC  +     L+  G+++   +   +G    +    
Sbjct: 495 LFSSM--LEAYIKPNAVTFTNILCACNHA----GLVNEGEQLFEQMEPLYGIVPQIQHYV 548

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVS-WSAMIACYARNGMAFEALELFREMIME 282
            ++D++ R G +  A     +M +    + W A++   +R+G   E  EL  + ++E
Sbjct: 549 CVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHG-NVELAELAYQNLLE 604


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/581 (37%), Positives = 333/581 (57%), Gaps = 15/581 (2%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDKTRR 143
           LL  C   NSL     +H+H+  +G      +  KL+N    S   S+  A+ +F +   
Sbjct: 10  LLQGC---NSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMEC 66

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
                WN++ R    +    + +  Y +M      I  D FT+++VLKAC          
Sbjct: 67  PQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSI-PDTFTFSFVLKACER----IKAE 121

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
           +  KE+H SV+R GY+  V + T L+  Y+  G V  A  VF +M  +++V+W+AMI+C+
Sbjct: 122 RKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCF 181

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           ++ G+  EAL+ + +M  E+ D+  +  T+V ++ +CA L AL  G  +H +    GLD 
Sbjct: 182 SQQGLHQEALQTYNQMRSENVDI--DGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQ 239

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            L V +AL+ MYA+CG L+    +FD M ++D+ +WNS+I  YGVHG G +AI  F++M+
Sbjct: 240 SLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQML 299

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
              + P+P++F+ +L  CSH GLV+EG   F  M  +  ++P V+HY C+VDL GRA KL
Sbjct: 300 EARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKL 359

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
           ++A +I+ +        +W  LLGSC+IH NV + E A  RL EL  T+AG+ +LLA +Y
Sbjct: 360 DKALEIVSNSS-HNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIY 418

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           A       V R++++++++G +  PG S IE+  +++ FV  D+ H    +++  L  + 
Sbjct: 419 AGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVI 478

Query: 564 AEMKEKGYVPQTKVVLYDL--DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
            +    GYV    +   D+    E  +     HSEKLA+AFGL  T+ G  IRI KNLR+
Sbjct: 479 HQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRV 538

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCHSF K +S   N+EI+VRD  RFHHF+ G CSC DYW
Sbjct: 539 CRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 136/295 (46%), Gaps = 13/295 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+  +L +C    +      VH  +   G+D D  + T L+  YS   SV  AR V
Sbjct: 103 PDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQV 162

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FDK   R +  WNA+    +  G  +E L+ Y +M      I  D FT   ++ +C    
Sbjct: 163 FDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDI--DGFTLVGLISSCAH-- 218

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  G ++H     +G +  +++   LIDMYA+ G +  A  +F +M  K++ +W+
Sbjct: 219 --LGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWN 276

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           +MI  Y  +G   EA+  F++M+     + PN VT + +L  C+    +++G  +  + L
Sbjct: 277 SMIVGYGVHGRGSEAIYCFQQML--EARIQPNPVTFLGLLCGCSHQGLVQEG--VKYFNL 332

Query: 318 RRGLDSILPVV---SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
                 + P V     LV +Y R GKL+    +  +    D V W  L+ S  +H
Sbjct: 333 MSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSNSSHNDSVLWRILLGSCKIH 387



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA--RCGKLELGQ 345
            N   ++++LQ C +L  L +   IH +++  GL   +P+ + L+   A    G L   Q
Sbjct: 2   SNEKAILALLQGCNSLKRLRK---IHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQ 58

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PSPISFVSVLGAC 401
            +F  M+     +WNS+I  +        AI  + +M+    S P   +F  VL AC
Sbjct: 59  LLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKAC 115


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/627 (35%), Positives = 339/627 (54%), Gaps = 73/627 (11%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLI--NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            +H     +G D D + + KLI     S  D++  AR +         +++N L R  + 
Sbjct: 190 QIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSE 249

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +      + ++  M   G  I  D F++ +V+KA    +  F  L+ G ++H   L+HG 
Sbjct: 250 SDEPHNSVAVFVEMMRKGF-IFPDSFSFAFVVKA----AANFRSLRTGFQMHCQALKHGL 304

Query: 219 NGIVHIMTTLIDMYARFGC----------------------------------------- 237
           +  + + TTLI MY   GC                                         
Sbjct: 305 DSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDK 364

Query: 238 ----------VMYAGFV-----------FSQMAVKNVVSWSAMIACYARNGMAFEALELF 276
                     VM AG++           FS+M  ++ VSWS MI  ++ NG   E+   F
Sbjct: 365 MLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYF 424

Query: 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
           RE++    ++ PN V++  VL AC+   A E GK +HG++ + G   I+ V +AL+ MY+
Sbjct: 425 RELLRA--EMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYS 482

Query: 337 RCGKLELGQCVFDHM-DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
           RCG + + + VF+ M +KR +VSW S+I+   +HG+G +AI+IF EM   GV P  ISF+
Sbjct: 483 RCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFI 542

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 455
           S+L ACSHAGL++EG+  F  M++ + I P+VEHY CMVDL GR+ KL++A   I  + I
Sbjct: 543 SLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPI 602

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
            P   VW +LLG+C  H N+ELAE+  +RL EL+P N+G+ VLL++VYA A  W +V  +
Sbjct: 603 PPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASI 662

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK-EKGYVPQ 574
           ++ +  + ++K+   S +EV + MY F + ++      + H  L  +   ++ E GY P+
Sbjct: 663 RKSMIVQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAPE 722

Query: 575 TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISK 634
               LYD++ EEKE  V  HSEKLA+AF L    KG  IRI KNLR+C DCH+  K  S+
Sbjct: 723 VASALYDVEEEEKEDQVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMKLTSR 782

Query: 635 FANKEILVRDVNRFHHFRNGVCSCGDY 661
               EI++RD NRFH F++G CSCGDY
Sbjct: 783 VYGVEIVIRDRNRFHSFKDGSCSCGDY 809



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 110/240 (45%), Gaps = 15/240 (6%)

Query: 70  DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129
           ++L  E  P + +   +L +C+   +      +H  +  +G+     +   LI++YS   
Sbjct: 426 ELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCG 485

Query: 130 SVDDARHVFDKTR-RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
           +V  AR VF+  + +R+I  W ++   L + G GEE + ++  M  T +G+  D  ++  
Sbjct: 486 NVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEM--TESGVMPDEISFIS 543

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLR--HGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
           +L AC  S  G  L+K G+   + + R  H    + H    ++D+Y R G +  A     
Sbjct: 544 LLYAC--SHAG--LIKEGEGYFSKMKRVYHIEPAVEH-YGCMVDLYGRSGKLQKAYSFIC 598

Query: 247 QMAV-KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
           QM +    + W  ++   + +G     +EL  ++    ++L PN+   + +L    A A 
Sbjct: 599 QMPIPPTAIVWRTLLGACSSHG----NIELAEQVKQRLNELDPNNSGDLVLLSNVYATAG 654


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/588 (35%), Positives = 341/588 (57%), Gaps = 10/588 (1%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           +PNP   T  L    C     L   ++  +  T N  D +P +   L+++Y+    + DA
Sbjct: 260 KPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLN--DTEPHVGGALLDMYAKCGDIKDA 317

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R  F+      + + + +      + + E+  EL+ R+    + +  + ++ + VL+AC 
Sbjct: 318 RLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRL--MRSSVLPNEYSLSSVLQACT 375

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
                   L  GK+IH   ++ G+   + +   L+D YA+   +  +  +FS +   N V
Sbjct: 376 ----NMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEV 431

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           SW+ ++  ++++G+  EAL +F EM  ++  +    VT  SVL+ACA+ A++     IH 
Sbjct: 432 SWNTIVVGFSQSGLGEEALSVFCEM--QAAQMPCTQVTYSSVLRACASTASIRHAGQIHC 489

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            I +   ++   + ++L+  YA+CG +     VF H+ +RD++SWN++IS Y +HG    
Sbjct: 490 SIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAAD 549

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
           A+++F  M    V  + I+FV++L  CS  GLV  G  LF+SMR +H I+PS+EHY C+V
Sbjct: 550 ALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIV 609

Query: 435 DLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
            LLGRA +L +A + I D+   P   VW +LL SC IH NV L   +++++ E+EP +  
Sbjct: 610 RLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDET 669

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
            YVLL+++YAAA   D+V  +++ +   G++KVPG S +E+K ++++F      HP    
Sbjct: 670 TYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRV 729

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
           ++A+L  L+ +   +GY+P   VVL+D+D E+K R++  HSE+LA+A+GL+ T  G  IR
Sbjct: 730 INAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIR 789

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I KNLR C DCH+    ISK   +EI+VRD+NRFHHF +G CSCGDYW
Sbjct: 790 ILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 175/394 (44%), Gaps = 21/394 (5%)

Query: 68  ALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF--DQDPFLVTKLINVY 125
           +L +L   P          L  C           VH H+   G     D F    L+N+Y
Sbjct: 47  SLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMY 106

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
                +  AR +FD+   R +  +  L +A    G  E    L+RR+   G  +  ++F 
Sbjct: 107 GKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEV--NQFV 164

Query: 186 YTYVLKACVA-SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
            T +LK  +A  + G +       +H+   + G++    + + LID Y+    V  A  V
Sbjct: 165 LTTMLKLAIAMDAAGLA-----GGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHV 219

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F+ +  K+ V W+AM++CY+ N     A  +F +M +      PN   + SVL+A   L 
Sbjct: 220 FNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCK--PNPFALTSVLKAAVCLP 277

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           ++  GK IHG  ++   D+   V  AL+ MYA+CG ++  +  F+ +   DV+  + +IS
Sbjct: 278 SVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMIS 337

Query: 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
            Y       +A ++F  ++   V P+  S  SVL AC++   ++ GK +       H I+
Sbjct: 338 RYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQI-----HNHAIK 392

Query: 425 PSVEH----YACMVDLLGRANKLEEAAKIIEDLR 454
              E        ++D   + N ++ + KI   LR
Sbjct: 393 IGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLR 426


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/554 (38%), Positives = 323/554 (58%), Gaps = 8/554 (1%)

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           GFD + F+ + L ++YS    + +A  VFD+  ++    W A+       G  E  +  +
Sbjct: 301 GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 360

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           R M   G  + +D+  +  VL A    S G       K IH  V + G+   V +   LI
Sbjct: 361 RDMKREGL-VGADQHVFCSVLSA----SGGLKDGWLSKSIHCCVTKAGFELEVAVRNALI 415

Query: 230 DMYARFGCVMYAGFVFS-QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           DMYA+   V  A  V        NVVS ++MI  Y       EAL ++ E+  +  +  P
Sbjct: 416 DMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVE--P 473

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N  T  S+++ CA  A LEQG  +H  +++  L     V S LV MY +CG + L   +F
Sbjct: 474 NEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLF 533

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + ++ R  ++WN++I+ +  HG+G +AIQ F  MIY G+ P+ I+FVS+L ACSHAGLV+
Sbjct: 534 NEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVD 593

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG   F SM++ H I P  EHY+C++D  GRA +L+EA K I ++ I+P    W SLLG+
Sbjct: 594 EGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGA 653

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CR+  + EL E A++ L +LEP N G +V L+ +YA+   W++VK V++L+    ++K+P
Sbjct: 654 CRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLP 713

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S ++  +K + F S D  HPQ + ++  L  L+  +KE+GY+P T  +  +L+   KE
Sbjct: 714 GFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKE 773

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           RI+  HSE++AVAF LI+    + I + KNLR+C DCH+  KFI K   ++I+VRD +RF
Sbjct: 774 RILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRF 833

Query: 649 HHFRNGVCSCGDYW 662
           HHF NG CSCGDYW
Sbjct: 834 HHFVNGRCSCGDYW 847



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 163/389 (41%), Gaps = 49/389 (12%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQ-DPFLVTKLINVYSHFDSVDDARHVFDKTRRR 144
           LL SC     L     +H+ L  +G      FL   LI +YSH   +  A  +F    RR
Sbjct: 176 LLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRR 235

Query: 145 TIYVWNALFRALT---LAGRGEEVLELYRRMNGTGTGIRSDRF------------TYTYV 189
               W  L   L+   +           RR      G+   RF                 
Sbjct: 236 NAVSWTTLVSGLSQNLMHADALAAFAAMRR-----AGVAPTRFALSSAARAAAALGAPLR 290

Query: 190 LKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249
            ++C AS              ASV   G++  + + + L DMY++ G +  A  VF QM 
Sbjct: 291 ARSCTAS--------------ASV---GFDTELFVASNLADMYSKCGLLSEACRVFDQMP 333

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            K+ V+W+AMI  YA+NG    A+  FR+M  E   +  +     SVL A   L      
Sbjct: 334 QKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGL-VGADQHVFCSVLSASGGLKDGWLS 392

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           K IH  + + G +  + V +AL+ MYA+   +E    V     K D   WN +  +  + 
Sbjct: 393 KSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVL----KIDPGGWNVVSGTSMID 448

Query: 370 GY-----GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
           GY       +A+ I+ E+   GV P+  +F S++  C+   L+E+G  L   + K  +IR
Sbjct: 449 GYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIR 508

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDL 453
            S    + +VD+ G+   +  + ++  ++
Sbjct: 509 DSFVG-STLVDMYGKCGLISLSMQLFNEI 536



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 137/308 (44%), Gaps = 42/308 (13%)

Query: 187 TYVLKACVASSCGFSL-LKHGKEIHASVLRHGYNGIVHIMTT-LIDMYARFGCVMYAGFV 244
           T V  A +  SCG +  L+ G+ +HA ++  G       +   LI MY+    +  A  +
Sbjct: 169 TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 228

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN------------SVT 292
           F+ M  +N VSW+ +++  ++N M   A  L     M    + P             ++ 
Sbjct: 229 FAAMPRRNAVSWTTLVSGLSQNLM--HADALAAFAAMRRAGVAPTRFALSSAARAAAALG 286

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
                ++C A A++             G D+ L V S L  MY++CG L     VFD M 
Sbjct: 287 APLRARSCTASASV-------------GFDTELFVASNLADMYSKCGLLSEACRVFDQMP 333

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGK 411
           ++D V+W ++I  Y  +G    A+  F++M   G V      F SVL A   +G +++G 
Sbjct: 334 QKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA---SGGLKDG- 389

Query: 412 MLFESMR---KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            L +S+     +      V     ++D+  ++  +E A+++   L+I+PG   W  + G+
Sbjct: 390 WLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRV---LKIDPGG--WNVVSGT 444

Query: 469 CRIHCNVE 476
             I   +E
Sbjct: 445 SMIDGYIE 452



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 11/196 (5%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           +EPN  + T+  ++  C     L     +H+ +      +D F+ + L+++Y     +  
Sbjct: 471 VEPN--EFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISL 528

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           +  +F++   RT   WNA+       G G E ++ + RM    +GIR +   +  +L AC
Sbjct: 529 SMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRM--IYSGIRPNHIAFVSLLTAC 586

Query: 194 VASSCGFSLLKHG-KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK- 251
             S  G  L+  G K  ++    HG        + +ID Y R G +  A    S+M +K 
Sbjct: 587 --SHAG--LVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKP 642

Query: 252 NVVSWSAMI-ACYARN 266
           N   W +++ AC  R 
Sbjct: 643 NAYGWCSLLGACRMRG 658



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 22/229 (9%)

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA-LVTMYARCGKLELGQCV 347
            +V + S+LQ+C     L +G+++H  ++  G  +    ++  L+TMY+ C  L     +
Sbjct: 19  TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 78

Query: 348 FDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI----SFVSVLG---- 399
           F  M +R+ VSW +L+S    +     A+  F  M   GV+P+ +     F + LG    
Sbjct: 79  FAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHT 138

Query: 400 -ACSHAGLVEEGKMLFESMRKEHMIRP------SVEHYACMVDLLGRANKLEEAAKIIED 452
            A SH      G  L      + + RP      +  H A ++   GRA  L    +++  
Sbjct: 139 LAASH---CHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRR-GRLLHA 194

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASK-RLFELEP-TNAGNYVLL 499
             +  G     + L +  I      A+ AS  RLF   P  NA ++  L
Sbjct: 195 RLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTL 243


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/571 (38%), Positives = 322/571 (56%), Gaps = 45/571 (7%)

Query: 94  NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWNA 151
           NS  +   VH+ +           +T++  V +   S   A+ +F   + ++   +VWN+
Sbjct: 72  NSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNS 131

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
             +AL       + + L+ R+      +  D FT + VL+AC+        L +G+ +H 
Sbjct: 132 CLKALAEGDSPIDAIMLFYRLRQYD--VCPDTFTCSSVLRACL----NLLDLSNGRILHG 185

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
            V + G+                                    SW++MIA Y + G A E
Sbjct: 186 VVEKVGFR-----------------------------------SWTSMIAGYVQCGKAKE 210

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           A+ LF +M  E   +  N VT+V+VL ACA L AL+ G  IH Y  R G    + + + L
Sbjct: 211 AIHLFAKM--EEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTL 268

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           + MY +CG LE    VF+ M++R VVSW+++I    +HG   +A+++F +M   G+ P+ 
Sbjct: 269 IDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNG 328

Query: 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451
           ++F+ +L ACSH GL+ EG+  F SM +++ I P +EHY CMVDLL RA  L EA + I 
Sbjct: 329 VTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFIL 388

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
           ++ ++P   VWG+LLG+CR+H NVE+AE A K L EL+P N G YV+L+++YA A  W++
Sbjct: 389 NMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWED 448

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGY 571
             RV++ ++ R ++K PG S I V   ++ FV+ +E HP  EQ+      L  EM+ KGY
Sbjct: 449 TARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGY 508

Query: 572 VPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKF 631
           VP T VVL D++  EK + V  HSEKLA+ FGL+NT     IRI KNLR+CEDCHS  K 
Sbjct: 509 VPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKL 568

Query: 632 ISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           IS   N+EI+VRD NRFH F +  CSC DYW
Sbjct: 569 ISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 142/318 (44%), Gaps = 14/318 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P    +   L +    +S  DA+ +   L       D F  + ++    +   + + R +
Sbjct: 124 PETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRIL 183

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
                +     W ++       G+ +E + L+ +M   G  ++ +  T   VL AC    
Sbjct: 184 HGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAG--VKCNEVTVVAVLAACA--- 238

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  G  IH    RHG+   V I  TLIDMY + GC+  A  VF +M  + VVSWS
Sbjct: 239 -DLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWS 297

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           AMI   A +G A EAL LF +  M    + PN VT + +L AC+ +  + +G+     + 
Sbjct: 298 AMIGGLAMHGRAEEALRLFSD--MSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMT 355

Query: 318 RR-GLDSILPVVSALVTMYARCGKL-ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           R  G+   +     +V + +R G L E  + + +   K + V W +L+ +  VH    K 
Sbjct: 356 RDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVH----KN 411

Query: 376 IQIFKEMIYHGVSPSPIS 393
           +++ +E I H +   P++
Sbjct: 412 VEMAEEAIKHLLELDPLN 429


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/516 (39%), Positives = 313/516 (60%), Gaps = 14/516 (2%)

Query: 150  NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
            N + R    + R    LEL+RR          D  TY  +++AC         L+ G+ +
Sbjct: 776  NTVLRIAAGSPRPRVALELHRRRLAL-----PDTHTYPPLIQAC----ARLLALREGECL 826

Query: 210  HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK--NVVSWSAMIACYARNG 267
            HA   ++G+  +V +  +L+ +Y   G    A  VF +M V+  N+VSW++M+  +A NG
Sbjct: 827  HAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANG 886

Query: 268  MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
               E L +F EM+    D  P+  T+VSVL ACA   AL  G+ +H Y+ + GL     V
Sbjct: 887  RPNEVLTVFWEML--GVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHV 944

Query: 328  VSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
             +AL+ +YA+CG +   + +F+ M   R VVSW SLI     +G+G +A+++F  M    
Sbjct: 945  SNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREK 1004

Query: 387  VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
            + P+ I+ V VL ACSH GLV++G   F+ M++++ I P +EH  CMVDLLGRA ++EEA
Sbjct: 1005 LVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEA 1064

Query: 447  AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
               I  + +EP   VW +LLGSC +H  +EL + A +RL EL+P ++G+YVLL+++YAA 
Sbjct: 1065 YDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAV 1124

Query: 507  DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
             MW +V  +++ +    ++K PG S +E++  +Y FV  D  HP+ EQ++ +L  ++  +
Sbjct: 1125 GMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERL 1184

Query: 567  KEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
            + +GY+P+T  VL D++ EEKE  +  HSE+LA+AF L+ +  G  IRI KNLR+C DCH
Sbjct: 1185 RREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCH 1244

Query: 627  SFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
                 ISK  ++EI+VRD +RFHHF+ G CSC DYW
Sbjct: 1245 VAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 141/301 (46%), Gaps = 21/301 (6%)

Query: 78   PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
            P  HTY  L+ +C    +L +   +H+    NGF    F+   L+++Y      + A  V
Sbjct: 802  PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKV 861

Query: 138  FDK--TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
            FD+   R R +  WN++  +    GR  EVL ++  M   G     D FT   VL AC  
Sbjct: 862  FDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEM--LGVDFAPDGFTIVSVLTAC-- 917

Query: 196  SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNVV 254
                F  L  G+ +H  V + G     H+   LID+YA+ G V  A  +F +M + + VV
Sbjct: 918  --AEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVV 975

Query: 255  SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG----- 309
            SW+++I   A NG   EALELF   +ME   L P  +TMV VL AC+    ++ G     
Sbjct: 976  SWTSLIVGLAANGFGKEALELFS--LMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFD 1033

Query: 310  KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGV 368
            +M   Y    G+   +  +  +V +  R G++E        M  + + V W +L+ S  +
Sbjct: 1034 RMKEDY----GISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAM 1089

Query: 369  H 369
            H
Sbjct: 1090 H 1090



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 21/223 (9%)

Query: 53   NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
            N ++ S    G   + L V    L ++  P   T   +L +C    +L+    VH ++  
Sbjct: 876  NSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEK 935

Query: 109  NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT-RRRTIYVWNALFRALTLAGRGEEVLE 167
             G  ++  +   LI++Y+   SV+DAR +F++    RT+  W +L   L   G G+E LE
Sbjct: 936  VGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALE 995

Query: 168  LYRRMNGTGTGIRSDRFTYTYVLKACVASSC-----GFSLLKHGKEIHASVLRHGYNGIV 222
            L+  M      +     T   VL AC  S C     GF      KE       +G +  +
Sbjct: 996  LFSLME--REKLVPTEITMVGVLYAC--SHCGLVDDGFRYFDRMKE------DYGISPRI 1045

Query: 223  HIMTTLIDMYARFGCVMYA-GFVFSQMAVKNVVSWSAMIACYA 264
              +  ++D+  R G V  A  ++ +     N V W  ++   A
Sbjct: 1046 EHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCA 1088


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/608 (33%), Positives = 333/608 (54%), Gaps = 21/608 (3%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           +++   ++G + +A  +    P   + ++ ++         + DA  ++  +      +D
Sbjct: 116 MVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPG----KD 171

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
               T +I        VD+AR +FD+ R R +  W  +        R +   +L+  M  
Sbjct: 172 VVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMP- 230

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
             T +        Y L   +  +  F  +   K + A                +I     
Sbjct: 231 EKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIAC-------------NAMIVALGE 277

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G ++ A  VF QM  ++  +W  MI  Y R G   EALELF +M  +   + P+  +++
Sbjct: 278 VGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQM--QRQGVRPSFPSLI 335

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           S+L  CA LA+L+ G+ +H +++R   D  + V S L+TMY +CG+L   + VFD    +
Sbjct: 336 SILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSK 395

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           D++ WNS+IS Y  HG G +A+++F EM   G  P+ ++ +++L ACS+ G +EEG  +F
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIF 455

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 474
           ESM  +  + P+VEHY+C VD+LGRA K+++A ++I  + I+P   VWG+LLG+C+ H  
Sbjct: 456 ESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSR 515

Query: 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 534
           ++LAE A+K+LFE+EP NAG Y+LL+ + A+   W +V  +++ +  + + K PG S IE
Sbjct: 516 LDLAEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIE 575

Query: 535 VKRKMYSFVSVD-EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLG 593
           V +K++ F       HP+   +  +L      ++E GY P    VL+D+D EEK   +  
Sbjct: 576 VGKKVHMFTRGGIRNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSR 635

Query: 594 HSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRN 653
           HSE+LAVA+GL+   +G  IR+ KNLR+C DCH+  K ISK   +EI++RD NRFHHF N
Sbjct: 636 HSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNN 695

Query: 654 GVCSCGDY 661
           G CSC DY
Sbjct: 696 GECSCRDY 703



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 137/334 (41%), Gaps = 68/334 (20%)

Query: 122 INVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181
           I+  S    +++AR  FD  R + I  WN++       G   E  +++  M         
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEM--------P 75

Query: 182 DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYA 241
           +R   ++                              NG       L+  Y +   +  A
Sbjct: 76  ERNIVSW------------------------------NG-------LVSGYIKNRMIEEA 98

Query: 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
             VF  M  +NVVSW+AM+  Y + GM  EA  LF  M         N V+   +     
Sbjct: 99  RNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPER------NEVSWTVMFGGLI 152

Query: 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
               ++  + +  Y +  G D +    + ++    R G+++  + +FD M +R+V++W +
Sbjct: 153 DGGRIDDARKL--YDMMPGKDVV--ASTNMIGGLCREGRVDEAREIFDEMRERNVITWTT 208

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
           +I+ YG +     A ++F+ M       + +S+ S+L   + +G +E+ +  FE M  + 
Sbjct: 209 MITGYGQNKRVDVARKLFEVM----PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKP 264

Query: 422 MIRPSVEHYAC--MVDLLGRANKLEEAAKIIEDL 453
           +I       AC  M+  LG   ++ +A ++ + +
Sbjct: 265 VI-------ACNAMIVALGEVGEIVKARRVFDQM 291



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 151/337 (44%), Gaps = 28/337 (8%)

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I   +R G +  A   F  +  K + SW+++++ Y  NG+  EA ++F EM         
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPER------ 77

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N V+   ++        +E+ + +   +  R + S     +A+V  Y + G +   + +F
Sbjct: 78  NIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSW----TAMVKGYVQEGMVVEAELLF 133

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             M +R+ VSW  +       G    A +++  M    V    ++  +++G     G V+
Sbjct: 134 WRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDV----VASTNMIGGLCREGRVD 189

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           E + +F+ MR+ ++I      +  M+   G+  +++ A K+ E +  E     W S+L  
Sbjct: 190 EAREIFDEMRERNVIT-----WTTMITGYGQNKRVDVARKLFEVMP-EKTEVSWTSMLLG 243

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLA-----DVYAAADMWDEVKRVKRLLEARG 523
             +   +E AE   + +  ++P  A N +++A     ++  A  ++D+++  +     RG
Sbjct: 244 YTLSGRIEDAEEFFE-VMPMKPVIACNAMIVALGEVGEIVKARRVFDQMED-RDNATWRG 301

Query: 524 LQKVPGRSRIEVKR-KMYSFVSVDEFHPQFEQLHALL 559
           + K   R   E++  ++++ +      P F  L ++L
Sbjct: 302 MIKAYERKGFELEALELFAQMQRQGVRPSFPSLISIL 338


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/619 (34%), Positives = 339/619 (54%), Gaps = 40/619 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P + T+ +L+ +            VH       F  D F++  LI+ Y+    +D A  V
Sbjct: 238 PNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLV 297

Query: 138 FD--KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
           F+  +   + I  WN++       G  ++ L+L+ RM   G  +  +  T   V+ AC A
Sbjct: 298 FEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEG--VHPNAVTMVSVMSAC-A 354

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS 255
            +   +L   G+++   + R+     +++    IDM+ + G V  A  +F  M  ++VVS
Sbjct: 355 KTMNLTL---GRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVS 411

Query: 256 WSAMIACYAR-------------------------------NGMAFEALELFREMIMESH 284
           W+ +I  YA+                               +G   EAL +FRE+ +   
Sbjct: 412 WTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKS 471

Query: 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
              P+ VT++S L ACA L A++ G+ IHGYI +  +     + ++L+ MY++ G +E  
Sbjct: 472 GARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKA 531

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
             VF  +  +DV  W+++I+   +HG G  AI++F +M    V P+ ++F ++L ACSH+
Sbjct: 532 IEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHS 591

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           GLV+EGK LF+ M + + + P  +HY+CMVD+LGRA  LEEA K IE + + P   VWG+
Sbjct: 592 GLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGA 651

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LLG+C IH N+ELAE+A  RL E+EP N G YVLL+++YA    W+ V  +++ +   GL
Sbjct: 652 LLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGL 711

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +K  G S IE+   ++ F+  D  HP    ++A L  + A ++  GYV  T  +L  ++ 
Sbjct: 712 KKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEE 771

Query: 585 EE-KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
           EE KE+ +  HSEK+A+AFGLI     + IRI KNLR+C DCH+  K +SK   ++I++R
Sbjct: 772 EEMKEKALKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLR 831

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D  RFHHF  G CSC DYW
Sbjct: 832 DRYRFHHFSGGHCSCQDYW 850



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 144/541 (26%), Positives = 245/541 (45%), Gaps = 78/541 (14%)

Query: 48  SSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTY-----ELLLLSCTHHNSLSDALNV 102
           S + K E I S+ +         V    P P   T        L   CT    L     +
Sbjct: 109 SEKEKEEWINSIGRS-------IVQHSSPTPASATATNVGDRALFQQCTSFKQLK---QI 158

Query: 103 HSHLTDNGFDQDPFLVTKLINV--YSHFDSVDDARHVFDKTRRRTIYVWNALFRAL-TLA 159
           H+ +       DP+  ++L     +S F ++D AR VFD+  +  +Y WN L RAL T +
Sbjct: 159 HAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSS 218

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
              + VL   R ++ +  G   ++FT+  ++KA     C       GK +H   ++  + 
Sbjct: 219 DPIQSVLVFIRMLHDSPFG--PNKFTFPVLIKAVAERRCFLV----GKAVHGMAIKTSFG 272

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMA--VKNVVSWSAMIACYARNGMAFEALELFR 277
             V ++ +LI  YA  G +  A  VF  +    K++VSW++M+  + + G   +AL+LF 
Sbjct: 273 DDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFE 332

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
            M  E   + PN+VTMVSV+ ACA    L  G+ +  YI R  +   L V +A + M+ +
Sbjct: 333 RMRNEG--VHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVK 390

Query: 338 CGKLELGQCVFDHMDKRDVVS-------------------------------WNSLISSY 366
           CG++E+ + +FD+M+KRDVVS                               WN LIS Y
Sbjct: 391 CGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGY 450

Query: 367 GVHGYGGKAIQIFKE--MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424
              G   +A+ IF+E  +   G  P  ++ +S L AC+  G ++ G+ +   ++KE  I+
Sbjct: 451 EQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKER-IQ 509

Query: 425 PSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK---VWGSLLGSCRIHCNVELAERA 481
            +      ++D+  ++  +E+A ++   +    G K   VW +++    +H      E A
Sbjct: 510 LNRNLATSLIDMYSKSGDVEKAIEVFHSI----GNKDVFVWSAMIAGLAMHGR---GEAA 562

Query: 482 SKRLFELEPTNAG-NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
            +   +++ T    N V   ++  A      V   KRL +   +++V G   +  K K Y
Sbjct: 563 IELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDE--MERVYG---VVPKTKHY 617

Query: 541 S 541
           S
Sbjct: 618 S 618



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 15/219 (6%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N LI    + G  ++AL +            P Q T    L +C    ++     +H ++
Sbjct: 444 NVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYI 503

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
                  +  L T LI++YS    V+ A  VF     + ++VW+A+   L + GRGE  +
Sbjct: 504 KKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAI 563

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-HGYNGIVHIM 225
           EL+  M    T ++ +  T+T +L AC  S     L+  GK +   + R +G        
Sbjct: 564 ELFLDMQ--ETQVKPNSVTFTNLLCACSHS----GLVDEGKRLFDEMERVYGVVPKTKHY 617

Query: 226 TTLIDMYARFGCVMYA-GFVFSQMAVKNVVSWSAMI-AC 262
           + ++D+  R G +  A  F+       +   W A++ AC
Sbjct: 618 SCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGAC 656


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/554 (38%), Positives = 323/554 (58%), Gaps = 8/554 (1%)

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           GFD + F+ + L ++YS    + +A  VFD+  ++    W A+       G  E  +  +
Sbjct: 152 GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 211

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           R M   G  + +D+  +  VL A    S G       K IH  V + G+   V +   LI
Sbjct: 212 RDMKREGL-VGADQHVFCSVLSA----SGGLKDGWLSKSIHCCVTKAGFELEVAVRNALI 266

Query: 230 DMYARFGCVMYAGFVFS-QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           DMYA+   V  A  V        NVVS ++MI  Y       EAL ++ E+  +  +  P
Sbjct: 267 DMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVE--P 324

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N  T  S+++ CA  A LEQG  +H  +++  L     V S LV MY +CG + L   +F
Sbjct: 325 NEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLF 384

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + ++ R  ++WN++I+ +  HG+G +AIQ F  MIY G+ P+ I+FVS+L ACSHAGLV+
Sbjct: 385 NEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVD 444

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG   F SM++ H I P  EHY+C++D  GRA +L+EA K I ++ I+P    W SLLG+
Sbjct: 445 EGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGA 504

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CR+  + EL E A++ L +LEP N G +V L+ +YA+   W++VK V++L+    ++K+P
Sbjct: 505 CRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLP 564

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S ++  +K + F S D  HPQ + ++  L  L+  +KE+GY+P T  +  +L+   KE
Sbjct: 565 GFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKE 624

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           RI+  HSE++AVAF LI+    + I + KNLR+C DCH+  KFI K   ++I+VRD +RF
Sbjct: 625 RILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRF 684

Query: 649 HHFRNGVCSCGDYW 662
           HHF NG CSCGDYW
Sbjct: 685 HHFVNGRCSCGDYW 698



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 165/377 (43%), Gaps = 24/377 (6%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQ-DPFLVTKLINVYSHFDSVDDARHVFDKTRRR 144
           LL SC     L     +H+ L  +G      FL   LI +YSH   +  A  +F    RR
Sbjct: 26  LLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRR 85

Query: 145 TIYVWNALFRALT---LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
               W  L   L+   +           RR      G+   RF  +   +A  A      
Sbjct: 86  NAVSWTTLVSGLSQNLMHADALAAFAAMRR-----AGVAPTRFALSSAARAAAAL----G 136

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
               G ++H   +R G++  + + + L DMY++ G +  A  VF QM  K+ V+W+AMI 
Sbjct: 137 APLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMID 196

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
            YA+NG    A+  FR+M  E   +  +     SVL A   L      K IH  + + G 
Sbjct: 197 GYAKNGSLEAAVLSFRDMKREGL-VGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGF 255

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY-----GGKAI 376
           +  + V +AL+ MYA+   +E    V     K D   WN +  +  + GY       +A+
Sbjct: 256 ELEVAVRNALIDMYAKSMDVESASRVL----KIDPGGWNVVSGTSMIDGYIETDCVEEAL 311

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
            I+ E+   GV P+  +F S++  C+   L+E+G  L   + K  +IR S    + +VD+
Sbjct: 312 VIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVG-STLVDM 370

Query: 437 LGRANKLEEAAKIIEDL 453
            G+   +  + ++  ++
Sbjct: 371 YGKCGLISLSMQLFNEI 387



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 17/296 (5%)

Query: 187 TYVLKACVASSCGFSL-LKHGKEIHASVLRHGYNGIVHIMTT-LIDMYARFGCVMYAGFV 244
           T V  A +  SCG +  L+ G+ +HA ++  G       +   LI MY+    +  A  +
Sbjct: 19  TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 78

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F+ M  +N VSW+ +++  ++N M   A  L     M    + P    + S  +A AAL 
Sbjct: 79  FAAMPRRNAVSWTTLVSGLSQNLM--HADALAAFAAMRRAGVAPTRFALSSAARAAAALG 136

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364
           A   G  +H   +R G D+ L V S L  MY++CG L     VFD M ++D V+W ++I 
Sbjct: 137 APLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMID 196

Query: 365 SYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMR---KE 420
            Y  +G    A+  F++M   G V      F SVL A   +G +++G  L +S+     +
Sbjct: 197 GYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA---SGGLKDG-WLSKSIHCCVTK 252

Query: 421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE 476
                 V     ++D+  ++  +E A+++   L+I+PG   W  + G+  I   +E
Sbjct: 253 AGFELEVAVRNALIDMYAKSMDVESASRV---LKIDPGG--WNVVSGTSMIDGYIE 303



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 11/196 (5%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           +EPN  + T+  ++  C     L     +H+ +      +D F+ + L+++Y     +  
Sbjct: 322 VEPN--EFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISL 379

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           +  +F++   RT   WNA+       G G E ++ + RM    +GIR +   +  +L AC
Sbjct: 380 SMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRM--IYSGIRPNHIAFVSLLTAC 437

Query: 194 VASSCGFSLLKHG-KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK- 251
             +     L+  G K  ++    HG        + +ID Y R G +  A    S+M +K 
Sbjct: 438 SHA----GLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKP 493

Query: 252 NVVSWSAMI-ACYARN 266
           N   W +++ AC  R 
Sbjct: 494 NAYGWCSLLGACRMRG 509


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/529 (38%), Positives = 319/529 (60%), Gaps = 16/529 (3%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           A +VF       ++ WN + R    +      L  YR+M    + I  D  TY ++LKA 
Sbjct: 83  AYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQM--IVSRIEPDTHTYPFLLKAI 140

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
             S      ++ G+ IH+  +R+G+  +V +  +L+ +YA  G    A  VF  M  +++
Sbjct: 141 SKSLN----VREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDL 196

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           V+  ++I  +A NG   EAL LFREM  E  +  P+  T+VS+L A A L ALE G+ +H
Sbjct: 197 VAXISVINGFALNGRPSEALTLFREMSAEGVE--PDGFTVVSLLSASAELGALELGRRVH 254

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
            Y+L+ GL     V ++L+ +YA+C  +           +R+ VSW SLI    V+G+G 
Sbjct: 255 VYLLKVGLRENSHVTNSLLDLYAKCDAI--------WEXERNAVSWTSLIVGLAVNGFGE 306

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A+++F+EM   G+ PS I+FV VL ACSH G+++EG   F  M++E  I P +EHY CM
Sbjct: 307 EALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCM 366

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VDLL RA  +++A + I+++ ++P    W +LLG+C IH ++ L E A   L +LEP ++
Sbjct: 367 VDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLEPKHS 426

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFE 553
           G+YVLL+++Y +   W +V+ ++R +   G++K  G S +E+  ++Y F   +  HPQ +
Sbjct: 427 GDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQ 486

Query: 554 QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETI 613
            ++ALL  ++  +K +GYVP T  VL D++ EEKE+ +  HSEK A+AF  +NT+ G TI
Sbjct: 487 DVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAPGTTI 546

Query: 614 RITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           R+ KNLR+C DCH   K ++K  ++EI++RD  RFHHFR G CSC DYW
Sbjct: 547 RVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 145/301 (48%), Gaps = 24/301 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  HTY  LL + +   ++ +   +HS    NGF+   F+   L+++Y+     + A +V
Sbjct: 128 PDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNV 187

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           F+  R R +    ++     L GR  E L L+R M  +  G+  D FT   +L A    S
Sbjct: 188 FELMRDRDLVAXISVINGFALNGRPSEALTLFREM--SAEGVEPDGFTVVSLLSA----S 241

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L+ G+ +H  +L+ G     H+  +L+D+YA+   +            +N VSW+
Sbjct: 242 AELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEXE--------RNAVSWT 293

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           ++I   A NG   EALELFRE  ME   L P+ +T V VL AC+    L++G     Y  
Sbjct: 294 SLIVGLAVNGFGEEALELFRE--MEGQGLVPSEITFVGVLYACSHCGMLDEG---FDYFR 348

Query: 318 RRGLD-SILPVV---SALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYG 372
           R   +  I+P +     +V + +R G ++       +M  + + V+W +L+ +  +HG+ 
Sbjct: 349 RMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHL 408

Query: 373 G 373
           G
Sbjct: 409 G 409



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 126/238 (52%), Gaps = 23/238 (9%)

Query: 188 YVLKACVASSCGFSLLKHG-KEIHASVLRHGY-----NGIVHIMTTLIDM-------YAR 234
           Y+L+ C +S       KH  + IHA  +RHG      +   H++ T++ +       Y  
Sbjct: 23  YLLQFCASS-------KHKLRXIHAFSIRHGVLLNNPDMGKHLIFTIVSLSAPMSYAYNV 75

Query: 235 FGCVM-YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293
           F  V+ YA  VF+ +   NV +W+ M   YA +     AL  +R+MI+    + P++ T 
Sbjct: 76  FTWVLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSR--IEPDTHTY 133

Query: 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353
             +L+A +    + +G+ IH   +R G +S++ V ++L+ +YA CG  E    VF+ M  
Sbjct: 134 PFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRD 193

Query: 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
           RD+V+  S+I+ + ++G   +A+ +F+EM   GV P   + VS+L A +  G +E G+
Sbjct: 194 RDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGR 251


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/586 (34%), Positives = 335/586 (57%), Gaps = 41/586 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL SC    +  +   +H H+   G D D ++ T LI++Y     ++DA  V
Sbjct: 89  PNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 148

Query: 138 FDKTRRRTI--------------YV-----------------WNALFRALTLAGRGEEVL 166
           FD++  R +              Y+                 WNA+       G  +E L
Sbjct: 149 FDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEAL 208

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL++ M    T +R D  T   V+ AC  S      ++ G+++H+ +  HG+   + I+ 
Sbjct: 209 ELFKDM--MKTNVRPDESTMVTVVSACAQSGS----IELGRQVHSWIDDHGFGSNLKIVN 262

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            LID+Y++ G +  A  +F  +  K+V+SW+ +I  Y    +  EAL LF+EM+      
Sbjct: 263 ALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-- 320

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELG 344
            PN VTM+S+L ACA L A++ G+ IH YI +R  G+ +   + ++L+ MYA+CG +E  
Sbjct: 321 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAA 380

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
             VF+ +  + + SWN++I  + +HG    +  IF  M  +G+ P  I+FV +L ACSH+
Sbjct: 381 HQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHS 440

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
           G+++ G+ +F SM +++ + P +EHY CM+DLLG +   +EA ++I  + +EP   +W S
Sbjct: 441 GMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 500

Query: 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524
           LL +C++H NVEL E  ++ L ++EP N G+YVLL+++YA A  W+EV   + LL  +G+
Sbjct: 501 LLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGM 560

Query: 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA 584
           +KVPG S IE+   ++ F+  D+FHP+  +++ +L  +   ++E G+VP T  VL +++ 
Sbjct: 561 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 620

Query: 585 EEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTK 630
           E KE  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH   K
Sbjct: 621 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAYK 666



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 207/406 (50%), Gaps = 44/406 (10%)

Query: 102 VHSHLTDNGFDQDPFLVTKLIN---VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
           +H+ +   G     + ++KLI    +  HFD +  A  VF+  +   + +WN +FR   L
Sbjct: 9   IHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 68

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
           +      L+LY  M     G+  + +T+ ++LK+C  S       K G++IH  VL+ G 
Sbjct: 69  SSDPVSALKLYVCM--ISLGLLPNSYTFPFLLKSCAKSKA----FKEGQQIHGHVLKLGC 122

Query: 219 NGIVHIMTTLIDMYARFG----------------CVMYAGFV---------------FSQ 247
           +  +++ T+LI MY + G                 V Y   +               F +
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDE 182

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           + VK+VVSW+AMI+ YA  G   EALELF++M+    ++ P+  TMV+V+ ACA   ++E
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMM--KTNVRPDESTMVTVVSACAQSGSIE 240

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G+ +H +I   G  S L +V+AL+ +Y++CG+LE    +F+ +  +DV+SWN+LI  Y 
Sbjct: 241 LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYT 300

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE-HMIRPS 426
                 +A+ +F+EM+  G +P+ ++ +S+L AC+H G ++ G+ +   + K    +  +
Sbjct: 301 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANA 360

Query: 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
                 ++D+  +   +E A ++   + +      W +++    +H
Sbjct: 361 SSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMH 405



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 173/401 (43%), Gaps = 49/401 (12%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I    + GN ++AL    D++     P + T   ++ +C    S+     VHS + D
Sbjct: 192 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDD 251

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GF  +  +V  LI++YS    ++ A  +F+    + +  WN L    T     +E L L
Sbjct: 252 HGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLL 311

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH--GYNGIVHIMT 226
           ++ M  +G     +  T   +L AC         +  G+ IH  + +   G      + T
Sbjct: 312 FQEMLRSGE--TPNDVTMLSILPACAH----LGAIDIGRWIHVYIDKRLKGVANASSLRT 365

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +LIDMYA+ G +  A  VF+ +  K++ SW+AMI  +A +G A  + ++F    M  + +
Sbjct: 366 SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSR--MRKNGI 423

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+ +T V +L AC+    L+ G+    +I R           ++   Y    KLE   C
Sbjct: 424 EPDDITFVGLLSACSHSGMLDLGR----HIFR-----------SMTQDYKMTPKLEHYGC 468

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           + D +               G  G   +A ++   M    + P  + + S+L AC   G 
Sbjct: 469 MIDLL---------------GHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACKMHGN 510

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447
           VE G+   +++ K     P    Y  + ++   A +  E A
Sbjct: 511 VELGESFAQNLIKIEPENPG--SYVLLSNIYATAGRWNEVA 549


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/533 (38%), Positives = 322/533 (60%), Gaps = 12/533 (2%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGE---EVLELYRRMNGTGTGIRSDRFTYTYVL 190
           AR++FD+    T + +N+L RAL+ A       + + +YRRM   G+ +  + FT  + L
Sbjct: 80  ARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPL-PNSFTLAFAL 138

Query: 191 KACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM-A 249
           KAC         L  G+++H+   R G     ++ T L+++YA+   V  A  VF  M  
Sbjct: 139 KACSV----VPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVG 194

Query: 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309
            KN+ +WSAMI  Y+R GM  EAL LFREM  ++ D+ P+ VTMVSV+ ACA   AL+ G
Sbjct: 195 DKNLAAWSAMIGGYSRVGMVNEALGLFREM--QAADVNPDEVTMVSVISACAKAGALDLG 252

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
           + +H +I R+G+   L + +AL+ MYA+CG +E  + VFD M +RD  +W+++I    +H
Sbjct: 253 RWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIH 312

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G    A+++F  M+   V P+ ++F+ VL AC+H+GLV EG+  + +M +E  I+PS+E+
Sbjct: 313 GLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTM-QELGIKPSMEN 371

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
           Y CMVDL  R++ L+EA   +  + I P   +W +LL + +     ++ + ASK+L ELE
Sbjct: 372 YGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELE 431

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFH 549
           P N  NYVLL+++YA+   WD V  +++ ++   +  V G S IE+   ++ FV  D+ H
Sbjct: 432 PCNPENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSH 491

Query: 550 PQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSK 609
           P+ +++  LL  ++  +   G+ P T  VL+D+  EEKE  +  HSE+LA+A+GL+ T  
Sbjct: 492 PEIKEIRLLLREIADRVVRAGHKPWTAAVLHDVGEEEKEVALCEHSERLAIAYGLLKTKA 551

Query: 610 GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
              IR+ KNLR C DCH   K +SK  ++EI+VRD  RFH F  G CSC D+W
Sbjct: 552 PHVIRVVKNLRFCPDCHEVAKIVSKSYDREIIVRDRVRFHRFVEGSCSCKDFW 604



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 126/268 (47%), Gaps = 9/268 (3%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P P   T    L +C+   +L +   +HS     G +  P++ T L+N+Y+  + V  AR
Sbjct: 127 PLPNSFTLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALAR 186

Query: 136 HVFDK-TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
            VFD     + +  W+A+    +  G   E L L+R M      +  D  T   V+ AC 
Sbjct: 187 TVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQ--AADVNPDEVTMVSVISACA 244

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
            +      L  G+ +HA + R G    + + T LIDMYA+ G +  A  VF  MA ++  
Sbjct: 245 KAGA----LDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTK 300

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           +WSAMI   A +G+   AL+LF  M+     + PN+VT + VL ACA    + +G+    
Sbjct: 301 AWSAMIVGLAIHGLVEVALKLFSRML--ELKVRPNNVTFIGVLSACAHSGLVNEGRRYWS 358

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLE 342
            +   G+   +     +V ++ R   L+
Sbjct: 359 TMQELGIKPSMENYGCMVDLFCRSSLLD 386



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 104/234 (44%), Gaps = 13/234 (5%)

Query: 67  QALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS 126
           QA DV     NP + T   ++ +C    +L     VH+ +   G   D  L T LI++Y+
Sbjct: 225 QAADV-----NPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYA 279

Query: 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY 186
               ++ A+ VFD    R    W+A+   L + G  E  L+L+ RM      +R +  T+
Sbjct: 280 KCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRM--LELKVRPNNVTF 337

Query: 187 TYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246
             VL AC  S     L+  G+   +++   G    +     ++D++ R   +  A    +
Sbjct: 338 IGVLSACAHS----GLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLDEAYSFVT 393

Query: 247 QMAV-KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
            MA+  N V W  ++   ++N   F+ ++   + ++E     P +  ++S L A
Sbjct: 394 GMAIPPNSVIWRTLLVA-SKNSNRFDIVQSASKKLLELEPCNPENYVLLSNLYA 446


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/577 (37%), Positives = 334/577 (57%), Gaps = 25/577 (4%)

Query: 87  LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI 146
           L +C+  + L   + +H  +  +  + D  + T LI++Y     VD A  VF++   + I
Sbjct: 232 LGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNI 291

Query: 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206
             WNA+     + G  E+              +  D  T   +L +C  S      L  G
Sbjct: 292 VAWNAM-----IGGMQED------------DKVIPDVITMINLLPSCSQSGA----LLEG 330

Query: 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN 266
           K IH   +R  +   + + T L+DMY + G +  A  VF+QM  KN+VSW+ M+A Y +N
Sbjct: 331 KSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQN 390

Query: 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP 326
               EAL++F+ ++ E   L P+++T+ SVL A A LA+  +GK IH YI++ GL S   
Sbjct: 391 EQYKEALKMFQHILNEP--LKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTF 448

Query: 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
           + +A+V MYA+CG L+  +  FD M  +DVVSWN++I +Y +HG+G  +IQ F EM   G
Sbjct: 449 ISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKG 508

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
             P+  +FVS+L ACS +GL++EG   F SM+ E+ I P +EHY CM+DLLGR   L+EA
Sbjct: 509 FKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEA 568

Query: 447 AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
              IE++ + P  ++WGSLL + R H +V LAE A++ +  L+  N G YVLL+++YA A
Sbjct: 569 KCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEA 628

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
             W++V R+K L++ +GL K  G S +++  +  SF++ D  H     ++ +L  L  ++
Sbjct: 629 GRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVLDILLKKI 688

Query: 567 KEKGYVPQ-TKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
            E  Y+   TK    D+ A+++      HS KLA+ FGLI+T+ G  + + KN R+C+DC
Sbjct: 689 GEDIYLHSLTKFRPLDV-AKKRGNSPEYHSVKLAICFGLISTAIGNPVIVRKNTRICDDC 747

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H   K IS+   +EI+V D   FHHFR+G CSC DYW
Sbjct: 748 HRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRDYW 784



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 190/371 (51%), Gaps = 27/371 (7%)

Query: 53  NELIQSLCKQGNLRQALDV---LSIEP-NPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+     G  ++A+D    +  E       T+  ++ +C    +L     VH  L  
Sbjct: 93  NVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIK 152

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GFD D ++   LI++Y     ++ A  VFD+   R +  WN++     + G G   L  
Sbjct: 153 IGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMC 212

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           ++ M   G   ++DRF     L AC    C    L+ G EIH  V+R      + + T+L
Sbjct: 213 FKEMLRLGN--KADRFGMISALGACSIEHC----LRSGMEIHCQVIRSELELDIMVQTSL 266

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           IDMY + G V YA  VF+++  KN+V+W+AMI      GM             E   + P
Sbjct: 267 IDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIG-----GM------------QEDDKVIP 309

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + +TM+++L +C+   AL +GK IHG+ +R+     L + +ALV MY +CG+L+L + VF
Sbjct: 310 DVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVF 369

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + M+++++VSWN+++++Y  +    +A+++F+ ++   + P  I+  SVL A +      
Sbjct: 370 NQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRS 429

Query: 409 EGKMLFESMRK 419
           EGK +   + K
Sbjct: 430 EGKQIHSYIMK 440



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 181/337 (53%), Gaps = 27/337 (8%)

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           +A  +F+K      ++WN + R  T  G  +E ++ Y RM   G  IRSD FT+ +V+KA
Sbjct: 76  NALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEG--IRSDNFTFPFVIKA 133

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN 252
           C         L  G+++H  +++ G++  V++   LIDMY + G +  A  VF +M V++
Sbjct: 134 CGE----LLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRD 189

Query: 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312
           +VSW++M++ Y  +G    +L  F+EM+   +    +   M+S L AC+    L  G  I
Sbjct: 190 LVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNK--ADRFGMISALGACSIEHCLRSGMEI 247

Query: 313 HGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
           H  ++R  L+  + V ++L+ MY +CGK++  + VF+ +  +++V+WN++I        G
Sbjct: 248 HCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMI--------G 299

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE-SMRKEHMIRPSVEHYA 431
           G  +Q   ++I     P  I+ +++L +CS +G + EGK +   ++RK  M  P +    
Sbjct: 300 G--MQEDDKVI-----PDVITMINLLPSCSQSGALLEGKSIHGFAIRK--MFLPYLVLET 350

Query: 432 CMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            +VD+ G+  +L+ A  +   +  E     W +++ +
Sbjct: 351 ALVDMYGKCGELKLAEHVFNQMN-EKNMVSWNTMVAA 386



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 13/220 (5%)

Query: 53  NELIQSLCKQGNLRQALD----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++ +  +    ++AL     +L+    P   T   +L +     S S+   +HS++  
Sbjct: 381 NTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMK 440

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   + F+   ++ +Y+    +  AR  FD    + +  WN +  A  + G G   ++ 
Sbjct: 441 LGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQF 500

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV-LRHGYNGIVHIMTT 227
           +  M   G G + +  T+  +L AC  S     L+  G     S+ + +G +  +     
Sbjct: 501 FSEMR--GKGFKPNGSTFVSLLTACSIS----GLIDEGWGFFNSMKVEYGIDPGIEHYGC 554

Query: 228 LIDMYARFGCVMYAGFVFSQMA-VKNVVSWSAMIACYARN 266
           ++D+  R G +  A     +M  V     W +++A  +RN
Sbjct: 555 MLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAA-SRN 593


>gi|302818616|ref|XP_002990981.1| hypothetical protein SELMODRAFT_132724 [Selaginella moellendorffii]
 gi|300141312|gb|EFJ08025.1| hypothetical protein SELMODRAFT_132724 [Selaginella moellendorffii]
          Length = 578

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/588 (36%), Positives = 329/588 (55%), Gaps = 14/588 (2%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG-FDQDPFLVTKLINVYSHFDSVDDARH 136
           P   TY  +L +C H   +     + + +   G  + D  + T ++N Y     +D AR 
Sbjct: 2   PNDVTYVAILGACGHPWEVD---TIRARVEACGSLELDVIVATAVMNAYGKCGDLDSARG 58

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FD+   R   VWNA+   L +  +G+E LEL R+M   G  +   + T    L AC   
Sbjct: 59  LFDRILVRDAAVWNAMISLLVVHEQGDEALELCRQMRLDG--VTPSKGTCVAALNAC--- 113

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID-MYARFGCVMYAGFVFSQMAVKNVVS 255
            C       G  IHA     G +    + T L++ MYAR G +  A  +F  M  +NV+S
Sbjct: 114 -CHSRDFSEGLRIHAFARELGGDADTVVQTALVNIMYARLGSLEDAREIFDAMTTRNVIS 172

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGY 315
           W+AM+  +++ G+  EAL +FR +++E   + PN VT  +VL A   LA++   K++   
Sbjct: 173 WTAMVGVHSQLGLNREALRIFRSILLEG--VTPNDVTFTAVLNASGNLASIRAAKLVQAC 230

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375
           +   G    + V + L+    +CG LE     F  M  ++ VSWNS I++   HG G + 
Sbjct: 231 LSETGFLGNVEVANGLLCALGKCGSLEEVAKFFRVMPVQNQVSWNSAIAANAQHGNGVRG 290

Query: 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435
           +++F+ M   G+    ++ + VL +CSHAGLV +G   F +M  ++ +    EHY+C++D
Sbjct: 291 VELFQTMQLEGIDTGSVTLIGVLSSCSHAGLVAQGYSYFLNMHVDYGLPAEAEHYSCVID 350

Query: 436 LLGRANKLEEAAKIIEDLRI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494
           LL RA  LE A + ++ L   +     W +LL  C++H ++E   RA++R+  L P + G
Sbjct: 351 LLSRAGWLEHAEEFVKRLPFGDESVFPWITLLCGCKLHGDLERGGRATQRILGLNPGSTG 410

Query: 495 NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQ 554
            Y+++ ++YA A  W E   V++ +   G +K PG S IEVK +++ F   D  HP+  +
Sbjct: 411 PYLVMHNLYAGAGKWPEAAAVRKSMVDLGPKKEPGLSWIEVKGRIHEFRVGDTSHPRSSE 470

Query: 555 LHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIR 614
           +H  L  L+ +MK  G+V  TK V+YDL A+EKE ++  HSEKLA+AFGLI+T+ GE +R
Sbjct: 471 IHRELERLNDKMKRAGFVCDTKAVVYDLQAKEKESLLCQHSEKLAIAFGLISTAAGEPLR 530

Query: 615 ITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           I KNLR+C DCHS TKFIS    +EI+VRD  RFHHFR G CSC D+W
Sbjct: 531 IMKNLRVCSDCHSATKFISGLVGREIVVRDAYRFHHFRGGACSCEDFW 578


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/581 (37%), Positives = 333/581 (57%), Gaps = 15/581 (2%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLIN--VYSHFDSVDDARHVFDKTRR 143
           LL  C   NSL     +H+H+  +G      +  KL+N    S   S+  A+ +F +   
Sbjct: 10  LLQGC---NSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMEC 66

Query: 144 RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLL 203
                WN++ R    +    + +  Y +M      I  D FT+++VLKAC          
Sbjct: 67  PQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSI-PDTFTFSFVLKACER----IKAE 121

Query: 204 KHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACY 263
           +  KE+H SV+R GY+  V + T L+  Y+  G V  A  VF +M  +++V+W+AMI+C+
Sbjct: 122 RKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCF 181

Query: 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323
           ++ G+  EAL+ + +M  E+ D+  +  T+V ++ +CA L AL  G  +H +    GLD 
Sbjct: 182 SQQGLHQEALQTYNQMRSENVDV--DGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQ 239

Query: 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
            L V +AL+ MYA+CG L+    +FD M ++D+ +WNS+I  YGVHG G +AI  F++M+
Sbjct: 240 SLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQML 299

Query: 384 YHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443
              + P+P++F+ +L  CSH GLV+EG   F  M  +  ++P V+HY C+VDL GRA KL
Sbjct: 300 EARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKL 359

Query: 444 EEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
           ++A +I+ +        +W  LLGSC+IH NV + E A  RL EL  T+AG+ +LLA +Y
Sbjct: 360 DKALEIVSNSS-HNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIY 418

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           A       V R++++++++G +  PG S IE+  +++ FV  D+ H    +++  L  + 
Sbjct: 419 AGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVI 478

Query: 564 AEMKEKGYVPQTKVVLYDL--DAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
            +    GYV    +   D+    E  +     HSEKLA+AFGL  T+ G  IRI KNLR+
Sbjct: 479 HQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRV 538

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCHSF K +S   N+EI+VRD  RFHHF+ G CSC DYW
Sbjct: 539 CRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 13/295 (4%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P   T+  +L +C    +      VH  +   G+D D  + T L+  YS    V  AR V
Sbjct: 103 PDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQV 162

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           FDK   R +  WNA+    +  G  +E L+ Y +M      +  D FT   ++ +C    
Sbjct: 163 FDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDV--DGFTLVGLISSCAH-- 218

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L  G ++H     +G +  +++   LIDMYA+ G +  A  +F +M  K++ +W+
Sbjct: 219 --LGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWN 276

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           +MI  Y  +G   EA+  F++M+     + PN VT + +L  C+    +++G  +  + L
Sbjct: 277 SMIVGYGVHGRGSEAIYCFQQML--EARIQPNPVTFLGLLCGCSHQGLVQEG--VKYFNL 332

Query: 318 RRGLDSILPVV---SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVH 369
                 + P V     LV +Y R GKL+    +  +    D V W  L+ S  +H
Sbjct: 333 MSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSNSSHNDSVLWRILLGSCKIH 387



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA--RCGKLELGQ 345
            N   ++++LQ C +L  L +   IH +++  GL   +P+ + L+   A    G L   Q
Sbjct: 2   SNEKAILALLQGCNSLKRLRK---IHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQ 58

Query: 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PSPISFVSVLGAC 401
            +F  M+     +WNS+I  +        AI  + +M+    S P   +F  VL AC
Sbjct: 59  LLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKAC 115


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 227/600 (37%), Positives = 335/600 (55%), Gaps = 11/600 (1%)

Query: 60  CKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
           C+ G L   L +L  E  P   T   + ++    + L  A  +H+     GF  D     
Sbjct: 277 CEAG-LELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCN 335

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
            LI +YS    + +A  VF +   R    W A+       G  ++ LE+Y  M      +
Sbjct: 336 SLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNN--V 393

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
             D  T    + + +A+      L  G ++H      G+   + +   L++MYA+   + 
Sbjct: 394 SPDDVT----VASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIE 449

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
            A  VF  M  K+V+SWS+MIA +  N   FEAL  FR M+    D+ PNSVT ++ L A
Sbjct: 450 KAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLA---DVKPNSVTFIAALAA 506

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           CAA  +L  GK IH ++LR+G+ S   V +AL+ +Y +CG+       F     +DVVSW
Sbjct: 507 CAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSW 566

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           N +++ +  HG+G  A+  F EM+  G  P  ++FV++L  CS AG+V +G  LF SM +
Sbjct: 567 NIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTE 626

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
           ++ I P+++HYACMVDLL R  +L E    I  + I P   VWG+LL  CRIH N+EL E
Sbjct: 627 KYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGE 686

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKM 539
            A+K + ELEP +AG +VLL+D+YA A MW EV +V++ +  +GL+   G S +EVK  +
Sbjct: 687 LAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYGCSWVEVKGAI 746

Query: 540 YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA 599
           ++F++ DE HPQ ++++ +L  +   MK  G+ P     L D +   K+ ++ GHSE+LA
Sbjct: 747 HAFLTDDESHPQIKEINDVLDGIYERMKASGFAPVESYSLEDKEV-SKDDVLCGHSERLA 805

Query: 600 VAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           VAFGLINT+ G +I +TKN   CE CH   + ISK   +EI VRD   FHHFR+G CSCG
Sbjct: 806 VAFGLINTTPGTSICVTKNQYTCESCHGILRMISKIVRREITVRDTKEFHHFRDGSCSCG 865



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 135/441 (30%), Positives = 214/441 (48%), Gaps = 16/441 (3%)

Query: 56  IQSLCKQGNLRQALDVLSIEPNPT-QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
           ++ LC  G L+QAL +L   P P  +  Y  L   C    +    L    H         
Sbjct: 69  LRELCAHGELQQALWLLESSPEPPDEDAYVALFHLCEWRRAAEHGLRACGHADAAHGTFG 128

Query: 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
             L   ++++   F     A  VF K   R ++ WN +      AG  EE L+LY RM  
Sbjct: 129 LRLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRM-- 186

Query: 175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
              G R D +T+  VL++C     G   L  G+E+HA VLR G    V ++  L+ MYA+
Sbjct: 187 LWAGARPDVYTFPCVLRSC----GGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAK 242

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G V  A  VF  M++ + +SW+AMIA +  N      LELF  M+ +  ++ PN +T+ 
Sbjct: 243 CGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLED--EVEPNLMTIT 300

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
           SV  A   L+ L+  K IH   ++RG  + +   ++L+ MY+  G++     VF  M+ R
Sbjct: 301 SVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETR 360

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414
           D +SW ++IS Y  +G+  KA++++  M  + VSP  ++  S L AC+  G ++ G  L 
Sbjct: 361 DAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLH 420

Query: 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV--WGSLL-GSCRI 471
           E    +  IR  V   A +V++  ++  +E+A   IE  +  P   V  W S++ G C  
Sbjct: 421 ELATSKGFIRYIVVANA-LVEMYAKSKIIEKA---IEVFKYMPDKDVISWSSMIAGFCFN 476

Query: 472 HCNVELAERASKRLFELEPTN 492
           H N E        L +++P +
Sbjct: 477 HKNFEALYYFRHMLADVKPNS 497


>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
 gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
          Length = 448

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/439 (41%), Positives = 295/439 (67%), Gaps = 3/439 (0%)

Query: 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES 283
           + T+L++MY R   +  A  VF ++  K+ ++W+A++  YA++G   EALE+F+ M  E 
Sbjct: 13  VGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIFQRMQQEG 72

Query: 284 HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343
             +   S T +SVL+ACA+ +AL  G++IH  ++  GLD  L V +ALV MYA+CGKL  
Sbjct: 73  --VKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVNMYAKCGKLVE 130

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
            + VFD M+  DVV+W ++++    HG+  ++  + + M   G+ P+ ++F+S++ ACSH
Sbjct: 131 AREVFDQMEGMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFLSLVFACSH 190

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
           +G ++E +  F +M  +H   P  EH+ C++DLLGR  +LEEA ++I+ +  EPG   W 
Sbjct: 191 SGYLDEARDCFIAM-ADHGFFPLPEHFRCVIDLLGRGGRLEEAQEVIDTMPFEPGLTAWL 249

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           ++L +CR+  +V  AE A+++ +E+EPT    Y+L++++YAA + WD+VK+V+RL+E RG
Sbjct: 250 TMLSACRLQKDVLRAEIAAEKCYEIEPTRPSAYLLMSNLYAALERWDDVKKVRRLMERRG 309

Query: 524 LQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLD 583
           ++K PG S IEVK +++ F + ++ HPQ + ++  L  L+ E+KE GYVP T +VL+++D
Sbjct: 310 VKKEPGLSCIEVKNRLHEFGAANKSHPQKDLIYEELRKLTLEIKEAGYVPDTSLVLHNVD 369

Query: 584 AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVR 643
            E K+  +  HSE+LAV +GLINT  G ++ +  NLR+C DCH+  K+IS  +N+EI+VR
Sbjct: 370 EETKQATLFHHSERLAVVYGLINTPPGTSLCVVNNLRMCSDCHTAFKYISTISNREIVVR 429

Query: 644 DVNRFHHFRNGVCSCGDYW 662
           D NRFH F  G CSC DYW
Sbjct: 430 DANRFHTFATGGCSCKDYW 448



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 142/257 (55%), Gaps = 9/257 (3%)

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           G + +  + T L+N+Y    S+ +AR VF++   +    WNA+  A    G G+E LE++
Sbjct: 6   GLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIF 65

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           +RM   G  +++   T+  VL+AC ++S     L  G+ IH +++ +G +  + + T L+
Sbjct: 66  QRMQQEG--VKTGSATFISVLEACASTSA----LALGRVIHQNLVANGLDRELIVATALV 119

Query: 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN 289
           +MYA+ G ++ A  VF QM   +VV+W+A++A  A++G   E+ +L R M +E   + PN
Sbjct: 120 NMYAKCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEG--IKPN 177

Query: 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349
           +VT +S++ AC+    L++ +     +   G   +      ++ +  R G+LE  Q V D
Sbjct: 178 NVTFLSLVFACSHSGYLDEARDCFIAMADHGFFPLPEHFRCVIDLLGRGGRLEEAQEVID 237

Query: 350 HMD-KRDVVSWNSLISS 365
            M  +  + +W +++S+
Sbjct: 238 TMPFEPGLTAWLTMLSA 254



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 103/189 (54%), Gaps = 7/189 (3%)

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           GL++   V ++LV MY RC  L   + VF+ +  +D ++WN+++++Y   GYG +A++IF
Sbjct: 6   GLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIF 65

Query: 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
           + M   GV     +F+SVL AC+    +  G+++ +++    + R  +   A +V++  +
Sbjct: 66  QRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATA-LVNMYAK 124

Query: 440 ANKLEEAAKIIEDLRIEPGPKV--WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
             KL EA ++ + +    G  V  W +++     H ++E ++   +R+ ELE     N  
Sbjct: 125 CGKLVEAREVFDQME---GMDVVAWTAIVAGSAQHGHIEESKDLMRRM-ELEGIKPNNVT 180

Query: 498 LLADVYAAA 506
            L+ V+A +
Sbjct: 181 FLSLVFACS 189



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 14/274 (5%)

Query: 53  NELIQSLCKQGNLRQALDV---LSIEPNPT-QHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++ +  + G  ++AL++   +  E   T   T+  +L +C   ++L+    +H +L  
Sbjct: 46  NAIVTAYAQDGYGKEALEIFQRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVA 105

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           NG D++  + T L+N+Y+    + +AR VFD+     +  W A+       G  EE  +L
Sbjct: 106 NGLDRELIVATALVNMYAKCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGHIEESKDL 165

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
            RRM     GI+ +  T+  ++ AC  S  G+  L   ++   ++  HG+  +      +
Sbjct: 166 MRRME--LEGIKPNNVTFLSLVFAC--SHSGY--LDEARDCFIAMADHGFFPLPEHFRCV 219

Query: 229 IDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           ID+  R G +  A  V   M  +  + +W  M++          A E+  E   E     
Sbjct: 220 IDLLGRGGRLEEAQEVIDTMPFEPGLTAWLTMLSACRLQKDVLRA-EIAAEKCYEIEPTR 278

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
           P++  ++S L   AAL   +  K +   + RRG+
Sbjct: 279 PSAYLLMSNLY--AALERWDDVKKVRRLMERRGV 310


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/551 (37%), Positives = 312/551 (56%), Gaps = 17/551 (3%)

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
           +D    T +I        VD+AR +FD+ R R +  W  +        R +   +L+  M
Sbjct: 170 KDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVM 229

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232
               T +        Y L   +  +  F  +   K + A                +I  +
Sbjct: 230 P-EKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIAC-------------NAMIVGF 275

Query: 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT 292
              G +  A  VF  M  ++  +W  MI  Y R G   EAL+LF +M  +   + P+  +
Sbjct: 276 GEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQM--QKQGVRPSFPS 333

Query: 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352
           ++S+L  CA LA+L+ G+ +H +++R   D  + V S L+TMY +CG+L   + VFD   
Sbjct: 334 LISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFS 393

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
            +D++ WNS+IS Y  HG G +A++IF EM   G  P+ ++ +++L ACS+AG +EEG  
Sbjct: 394 SKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLE 453

Query: 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
           +FESM  +  + P+VEHY+C VD+LGRA ++++A ++IE + I+P   VWG+LLG+C+ H
Sbjct: 454 IFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTH 513

Query: 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
             ++LAE A+K+LFE EP NAG YVLL+ + A+   W +V  V++ +    + K PG S 
Sbjct: 514 SRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSW 573

Query: 533 IEVKRKMYSFVSVD-EFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
           IEV +K++ F     + HP+   +  +L      ++E GY P    VL+D+D EEK   +
Sbjct: 574 IEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSL 633

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
             HSE+LAVA+GL+   +G  IR+ KNLR+C DCH+  K ISK   +EI++RD NRFHHF
Sbjct: 634 SRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHF 693

Query: 652 RNGVCSCGDYW 662
            NG CSC DYW
Sbjct: 694 NNGECSCRDYW 704



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 148/361 (40%), Gaps = 67/361 (18%)

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRG 162
            ++LT  G +   F +++L    S    +++AR  FD  + + I  WN++       G  
Sbjct: 10  RTYLTSTGVNCS-FEISRL----SRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLP 64

Query: 163 EEVLELYRRM--------NGTGTGIRSDRF-----------------TYTYVLKACVA-- 195
           +E  +L+  M        NG  +G   +R                  ++T ++K  +   
Sbjct: 65  KEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEG 124

Query: 196 ----SSCGFSLLKHGKEIHASVLRHGY--NGIVHIMTTLIDMYA---------------R 234
               +   F  +    E+  +V+  G   +G +     L DM                 R
Sbjct: 125 MVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCR 184

Query: 235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
            G V  A  +F +M  +NVV+W+ MI  Y +N     A +LF  M  ++       V+  
Sbjct: 185 EGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTE------VSWT 238

Query: 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVS--ALVTMYARCGKLELGQCVFDHMD 352
           S+L        +E  +     +       + PV++  A++  +   G++   + VFD M+
Sbjct: 239 SMLLGYTLSGRIEDAEEFFEVM------PMKPVIACNAMIVGFGEVGEISKARRVFDLME 292

Query: 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412
            RD  +W  +I +Y   G+  +A+ +F +M   GV PS  S +S+L  C+    ++ G+ 
Sbjct: 293 DRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQ 352

Query: 413 L 413
           +
Sbjct: 353 V 353



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 13/215 (6%)

Query: 55  LIQSLCKQGNLRQALDVLSIEPN----PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I++  ++G   +ALD+ +        P+  +   +L  C    SL     VH+HL    
Sbjct: 302 MIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQ 361

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
           FD D ++ + L+ +Y     +  A+ VFD+   + I +WN++       G GEE L+++ 
Sbjct: 362 FDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFH 421

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV-LRHGYNGIVHIMTTLI 229
            M  +GT    ++ T   +L AC  +      L+ G EI  S+  +      V   +  +
Sbjct: 422 EMPSSGT--MPNKVTLIAILTACSYA----GKLEEGLEIFESMESKFCVTPTVEHYSCTV 475

Query: 230 DMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-AC 262
           DM  R G V  A  +   M +K +   W A++ AC
Sbjct: 476 DMLGRAGQVDKAMELIESMTIKPDATVWGALLGAC 510



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 152/345 (44%), Gaps = 44/345 (12%)

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I   +R G +  A   F  +  K + SW+++++ Y  NG+  EA +LF EM         
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEM--------- 74

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILP---VVS--ALVTMYARCGKLEL 343
              +  +V+     ++   + +MI   +  R +  ++P   VVS  A+V  Y + G +  
Sbjct: 75  ---SERNVVSWNGLVSGYIKNRMI---VEARNVFELMPERNVVSWTAMVKGYMQEGMVGE 128

Query: 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
            + +F  M +R+ VSW  +       G   KA +++  M    V  S     +++G    
Sbjct: 129 AESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVAS----TNMIGGLCR 184

Query: 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463
            G V+E +++F+ MR+ +++      +  M+    + N+++ A K+ E +  E     W 
Sbjct: 185 EGRVDEARLIFDEMRERNVV-----TWTTMITGYRQNNRVDVARKLFE-VMPEKTEVSWT 238

Query: 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523
           S+L    +   +E AE   + +  ++P  A N +++   +       + +RV  L+E R 
Sbjct: 239 SMLLGYTLSGRIEDAEEFFE-VMPMKPVIACNAMIVG--FGEVGEISKARRVFDLMEDR- 294

Query: 524 LQKVPGRSRIEV-KRKMYSFVSVDEF--------HPQFEQLHALL 559
                 R  I+  +RK +   ++D F         P F  L ++L
Sbjct: 295 -DNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISIL 338



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 35/252 (13%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
            +++  Y   G    A  +F +M+ +NVVSW+ +++ Y +N M  EA  +F   +M   +
Sbjct: 52  NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFE--LMPERN 109

Query: 286 LCPNSVTMVSVLQAC-----------------AALAALEQGKMIHGYILR-RGLDSILPV 327
           +   +  +   +Q                    +   +  G +  G I + R L  ++PV
Sbjct: 110 VVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPV 169

Query: 328 --VSALVTMYA---RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382
             V A   M     R G+++  + +FD M +R+VV+W ++I+ Y  +     A ++F+ M
Sbjct: 170 KDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVM 229

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL--LGRA 440
                  + +S+ S+L   + +G +E+ +  FE M     ++P +   A +V    +G  
Sbjct: 230 ----PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMP----MKPVIACNAMIVGFGEVGEI 281

Query: 441 NKLEEAAKIIED 452
           +K      ++ED
Sbjct: 282 SKARRVFDLMED 293


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/543 (38%), Positives = 327/543 (60%), Gaps = 9/543 (1%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LIN Y     +  AR VFD+   R +  WNA+   L      EE L L+R M+G G    
Sbjct: 31  LINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGLG--FS 88

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
            D +T    L +  + S G   +  G++IH   +++G    + + ++L  MY R G +  
Sbjct: 89  PDEYT----LGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQD 144

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
              V   M V+N+V+W+ +I   A+NG     L L++  +M+     PN +T V+VL +C
Sbjct: 145 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYK--MMKISGCRPNKITFVTVLSSC 202

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           + LA   QG+ IH   ++ G  S++ VVS+L++MY++CG L      F   +  D V W+
Sbjct: 203 SDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWS 262

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           S+IS+YG HG G +AI++F  M     +  + ++F+++L ACSH+GL ++G  LF+ M +
Sbjct: 263 SMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVE 322

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
           ++  +P ++HY C+VDLLGRA  L++A  II+ + I+P P +W +LL +C IH N E+A+
Sbjct: 323 KYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQ 382

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKM 539
           +  K + E++P ++  YVLLA+V+A+A  W +V  V++ +  + ++K  G S  E K ++
Sbjct: 383 KVFKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEV 442

Query: 540 YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA 599
           + F   D    + +++++ L  L+ EMK KGY P T  VL+D+D EEKE  ++ HSEKLA
Sbjct: 443 HQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLA 502

Query: 600 VAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           VAF L+   +G  IRI KNLR+C DCH   K+IS   N+EI +RD +RFHHF NG CSCG
Sbjct: 503 VAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCG 562

Query: 660 DYW 662
           DYW
Sbjct: 563 DYW 565



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 149/309 (48%), Gaps = 9/309 (2%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
           +P ++T   +        S+S    +H +    G + D  + + L ++Y     + D   
Sbjct: 88  SPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEI 147

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           V      R +  WN L       G  E VL LY+ M  +G   R ++ T+  VL +C   
Sbjct: 148 VIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGC--RPNKITFVTVLSSC--- 202

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
               ++   G++IHA  ++ G + +V ++++LI MY++ GC+  A   FS+   ++ V W
Sbjct: 203 -SDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMW 261

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGY 315
           S+MI+ Y  +G   EA++LF  M  E  ++  N V  +++L AC+     ++G ++    
Sbjct: 262 SSMISAYGFHGQGDEAIKLFNSM-AEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMM 320

Query: 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGK 374
           + + G    L   + +V +  R G L+  + +   M  K D V W +L+S+  +H     
Sbjct: 321 VEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEM 380

Query: 375 AIQIFKEMI 383
           A ++FKE++
Sbjct: 381 AQKVFKEIL 389


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/535 (39%), Positives = 321/535 (60%), Gaps = 17/535 (3%)

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGR-----GEEVLELYRRMNGTGTGIRSDRFTYTY 188
           AR +FD+    T + +N+L RA++ +G        +   LYRRM   G+    + FT  +
Sbjct: 77  ARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPA-PNSFTLAF 135

Query: 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
           VLKAC A       L  G+++HA    HG     ++ T L+++YAR   V  A  VF  M
Sbjct: 136 VLKACTA-------LGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGM 188

Query: 249 AV-KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
              KN+V+WS+MI  Y+R GM  EAL LFR+M  ++  + P+ VTMVSV+ ACA   AL+
Sbjct: 189 VEDKNLVAWSSMIGGYSRMGMVNEALGLFRDM--QAVGVNPDEVTMVSVISACAKAGALD 246

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            GK +H +I R+G+   L + +AL+ MYA+CG +E  + VFD M +RD  +W+++I    
Sbjct: 247 LGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLA 306

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           +HG    A+ +F  M+   V P+ ++FV VL AC+H+GLV++G+  + +M +E  I  S+
Sbjct: 307 MHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTM-QELGIEASM 365

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           E+Y CMVDLL R+  L+EA   +  + I P   +W +LL + +    +++ E AS+RLFE
Sbjct: 366 ENYGCMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASRRLFE 425

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           LEP N  NYVLL+++YA    WD V+ +++ ++   +  V G S IE+   ++ FV  D 
Sbjct: 426 LEPQNPENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFVVSDG 485

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
            HP+ +++  +L  ++  +   G+ P T  VL+D+  EEKE  +  HSE+LA+A+GL+ T
Sbjct: 486 SHPEIKKIRLVLREIADRVLCAGHKPWTAAVLHDVVEEEKEVALCEHSERLAIAYGLLKT 545

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
                IR+ KNLR C DCH  TK ISK   +EI+VRD  RFH F  G CSC D+W
Sbjct: 546 KAPHVIRVVKNLRFCPDCHEVTKIISKSYGREIIVRDRVRFHRFIGGSCSCNDFW 600



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 132/268 (49%), Gaps = 12/268 (4%)

Query: 76  PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDAR 135
           P P   T   +L +CT   +L +   +H+    +G +  P++ T L+N+Y+  + V  AR
Sbjct: 126 PAPNSFTLAFVLKACT---ALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALAR 182

Query: 136 HVFDK-TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           +VFD     + +  W+++    +  G   E L L+R M     G+  D  T   V+ AC 
Sbjct: 183 NVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQ--AVGVNPDEVTMVSVISACA 240

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
            +      L  GK +HA + R G    + + T LIDMYA+ G +  A  VF  M  ++  
Sbjct: 241 KAGA----LDLGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTK 296

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           +WSAMI   A +G+A +AL LF  M+     + PN+VT V VL ACA    ++ G+    
Sbjct: 297 AWSAMIVGLAMHGLAEDALGLFSRML--QLKVRPNNVTFVGVLSACAHSGLVDDGRRYWC 354

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLE 342
            +   G+++ +     +V +  R G L+
Sbjct: 355 TMQELGIEASMENYGCMVDLLCRSGLLD 382



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 12/252 (4%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           + +I    + G + +AL    D+ ++  NP + T   ++ +C    +L     VH+ +  
Sbjct: 198 SSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDR 257

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G   D  L T LI++Y+    ++ A+ VFD    R    W+A+   L + G  E+ L L
Sbjct: 258 KGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDALGL 317

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + RM      +R +  T+  VL AC  S     L+  G+    ++   G    +     +
Sbjct: 318 FSRM--LQLKVRPNNVTFVGVLSACAHS----GLVDDGRRYWCTMQELGIEASMENYGCM 371

Query: 229 IDMYARFGCVMYA-GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287
           +D+  R G +  A  FV       N V W  ++   +++    + +EL    + E     
Sbjct: 372 VDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVA-SKSSNRIDIVELASRRLFELEPQN 430

Query: 288 PNSVTMVSVLQA 299
           P +  ++S L A
Sbjct: 431 PENYVLLSNLYA 442


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/621 (35%), Positives = 344/621 (55%), Gaps = 12/621 (1%)

Query: 46  SLSSRNK---NELIQSLCKQGNLRQALDVL-SIEPNPTQHTYELLLLSCTHHNSLSDALN 101
           ++ SRN    N L+      G    AL +L + + +  ++     L +  H  S      
Sbjct: 70  AMPSRNAVSGNLLMSGYASAGRHSDALALLKAADFSLNEYVLSTALSAAAHVRSYGMGRQ 129

Query: 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
            H +   +G  + P++   ++++Y     V+DA  VF+      I+ +N++       G 
Sbjct: 130 CHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGE 189

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            +  + + R M   G   + D  +Y  VL  C ++      L  G ++HA  L+      
Sbjct: 190 FDGSIRIVRSM--VGEVEQWDHVSYVAVLGHCASTK----ELLLGCQVHAQALKRRLEQN 243

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V++ + L+DMY +  C   A   F  +  KNVVSW+A++  Y +N    +AL+LF ++ +
Sbjct: 244 VYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEI 303

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           E   + PN  T    L +CA LAAL+ G  +    ++ G    L V +AL+ MY++ G +
Sbjct: 304 EG--VRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWGALSVCNALMNMYSKSGSI 361

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
                VF  M  RDVVSWNS+I  Y  HG   +A+ +F +M+   + PS ++FV VL AC
Sbjct: 362 HDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEIVPSYVTFVGVLLAC 421

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           +  GLV+EG      M KE  I+P  EHY CMV LL RA +L+EA + I    I      
Sbjct: 422 AQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVA 481

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W SLL SC+++ N  L  R ++++ +L+P + G YVLL+++YA A+ WD V +V++L+  
Sbjct: 482 WKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVGTYVLLSNMYAKANRWDGVVKVRKLMRE 541

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           RG++K PG S I+V  +++ F S D+ H    Q+   L  L  ++K  GYVP   VVL+D
Sbjct: 542 RGVRKEPGVSWIQVGSEVHVFTSEDKNHKWINQITIKLKELIGQIKVIGYVPNCAVVLHD 601

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           ++AE+KE  ++ HSEK+A+AFGLI++ +GETIRI KNLR+C+DCH   K IS    ++I+
Sbjct: 602 VEAEQKEEHLMYHSEKMALAFGLIHSPEGETIRIMKNLRICDDCHVAIKLISVVTRRKIV 661

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           VRD  RFH   +GVCSC DYW
Sbjct: 662 VRDTVRFHCIDDGVCSCDDYW 682



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 134/299 (44%), Gaps = 11/299 (3%)

Query: 121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
           LI  Y     +  AR +FD    R     N L      AGR  + L L +          
Sbjct: 51  LIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASAGRHSDALALLK---------A 101

Query: 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
           +D     YVL   ++++        G++ H   ++ G     ++   ++ MY +   V  
Sbjct: 102 ADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVED 161

Query: 241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC 300
           A  VF  ++  ++ ++++MI  +   G    ++ + R M+ E      + V+ V+VL  C
Sbjct: 162 AVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQW--DHVSYVAVLGHC 219

Query: 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
           A+   L  G  +H   L+R L+  + V SALV MY +C         F+ + +++VVSW 
Sbjct: 220 ASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWT 279

Query: 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           +++++Y  +     A+Q+F ++   GV P+  ++   L +C+    ++ G  L  S  K
Sbjct: 280 AVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMK 338



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 15/150 (10%)

Query: 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
           GK IH  ++R     ++   + L+  Y +CG+L L + +FD M  R+ VS N L+S Y  
Sbjct: 30  GKAIHAQMIRAAHFDVIQH-NHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYAS 88

Query: 369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA-----GLVEEGKMLFESMRKEHMI 423
            G    A+ + K   +   S +     + L A +H      G    G  +   +++   +
Sbjct: 89  AGRHSDALALLKAADF---SLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYV 145

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDL 453
             +V H  C      +   +E+A K+ E++
Sbjct: 146 CNAVLHMYC------QCAHVEDAVKVFENV 169


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/601 (36%), Positives = 344/601 (57%), Gaps = 53/601 (8%)

Query: 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH----VFDKTRRRTIYVWNALFRALTL 158
           H+ L  NG    P  +  +I+ +S  D   D  +    +   +   T++++N   R  + 
Sbjct: 8   HTQLIINGLTHPPPSLRPIIS-FSALDPSGDIDYALLLLLRTSTPPTVFLFNTTIRGFSR 66

Query: 159 AGRGEEVLE---LYRRMNGTGTGIRSDRFTYTYVLKACVASSC-GFSLLKHGKEIHASVL 214
           A R   +L    L+ RM      +  + FT+T++ + C  S+C  F L   G++ H  V+
Sbjct: 67  ARRPGSLLSSVLLFVRMGVLS--LAPNNFTFTFLFQGC--SNCVAFDL---GRQFHGMVI 119

Query: 215 RHGYNGIVHIMTTLIDMYA-------------------------------RFGCVMYAGF 243
           ++ +   V +  ++I  Y+                               R G ++ A  
Sbjct: 120 KNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALS 179

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +FS+M  +N +SW+ MI+ YA+NG   EAL LFREM M   +  PNS  +VSVL AC+ L
Sbjct: 180 LFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQE--PNSAILVSVLSACSQL 237

Query: 304 AALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNS 361
            AL+ G  +H YI ++   +DSIL   +AL+ MYA+CG ++L    F    KRDV ++ +
Sbjct: 238 GALDHGCWVHCYIGKKCVRVDSILS--AALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTA 295

Query: 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421
            IS   ++G   +A+Q+F++M   G+SP  +S+++VL ACSHAG VE+G   F SM   H
Sbjct: 296 AISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVH 355

Query: 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERA 481
            IRP ++HYACMVDLLGRA  LEEA K +  + I+P   +WG+LLG+CR++ N E+ +R 
Sbjct: 356 GIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRV 415

Query: 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYS 541
              L E +  + G Y+LL+++YA +   ++ ++V++ +  R + +VPG S IEV   ++ 
Sbjct: 416 GSLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHE 475

Query: 542 FVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVA 601
           F S D  H + E+++ +   +  E+K+ GY  +T+ V++D++ EEKE ++  HSEKLAVA
Sbjct: 476 FFSGDRSHEKTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVA 535

Query: 602 FGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY 661
           FG + T  G T+RI KN+R+C DCH   K +SK   ++I +RD   FHHF  G+CSC DY
Sbjct: 536 FGFLYTKSGSTLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDY 595

Query: 662 W 662
           W
Sbjct: 596 W 596



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 47/337 (13%)

Query: 69  LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
           + VLS+ PN    T+  L   C++  +       H  +  N F+ D F+   +I  YS  
Sbjct: 83  MGVLSLAPN--NFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVC 140

Query: 129 DSVDDARHVFDKTRRRTIYVWNAL----------FRALTL-------------------- 158
             ++DAR VFD++    +  WN++            AL+L                    
Sbjct: 141 GRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYA 200

Query: 159 -AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG 217
             G+ +E L L+R M         D+   + +L + +++      L HG  +H  + +  
Sbjct: 201 QNGQPKEALALFREMQML------DQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKC 254

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
                 +   LIDMYA+ G +  A   FS    ++V +++A I+  A NG + EAL+LF 
Sbjct: 255 VRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFE 314

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV---SALVTM 334
           +M  E   + P+ V+ ++VL AC+    +E+G   H +     +  I P +   + +V +
Sbjct: 315 QMKGEG--ISPDGVSYIAVLCACSHAGWVEKG--FHYFASMSDVHGIRPELDHYACMVDL 370

Query: 335 YARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHG 370
             R G LE  +     M  K D V W +L+ +  V+G
Sbjct: 371 LGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYG 407



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 102/228 (44%), Gaps = 16/228 (7%)

Query: 45  TSLSSRNK---NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLS 97
           + ++ RN    N +I    + G  ++AL +      ++  P       +L +C+   +L 
Sbjct: 182 SKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALD 241

Query: 98  DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALT 157
               VH ++       D  L   LI++Y+   S+D A   F  +R+R +  + A    L 
Sbjct: 242 HGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLA 301

Query: 158 LAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR-H 216
           + G  EE L+L+ +M   G GI  D  +Y  VL AC  S  G+  ++ G    AS+   H
Sbjct: 302 MNGCSEEALQLFEQMK--GEGISPDGVSYIAVLCAC--SHAGW--VEKGFHYFASMSDVH 355

Query: 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI-AC 262
           G    +     ++D+  R G +  A    + M +K + V W A++ AC
Sbjct: 356 GIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGAC 403


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/553 (37%), Positives = 312/553 (56%), Gaps = 37/553 (6%)

Query: 143 RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202
           RR+  + +AL RA   +GR +  L LY  +     G+     T   +LK+   S      
Sbjct: 50  RRSAELHDALIRAHASSGRPQAALPLYAHL--IRAGLFPTPHTLPSLLKSLALSPAVPGA 107

Query: 203 LKHGKEIHASVLRHGYNGIV--------------------HIM------------TTLID 230
            +    +HA  +R G  G +                    H++             TLI 
Sbjct: 108 RRLALAVHAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLIT 167

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
            +AR G V  A  +F +M  +N VSWSAM+  Y + G   EAL +F +M  ++  + P+ 
Sbjct: 168 AHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQM--QAQGVRPDD 225

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
             +V VL ACA L ALEQGK +HGY+    +   + + +ALV MYA+CG+++LG  VF+ 
Sbjct: 226 TVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEG 285

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M  ++V++W ++I    +HG G  ++ +F +M   GV P  I+F+  L AC+H GLV++G
Sbjct: 286 MKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKG 345

Query: 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470
           + LF SM   + I+P +EHY CMVDLL R   L EA  ++E + ++P   +WG+L+  CR
Sbjct: 346 RELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCR 405

Query: 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGR 530
            H NVELAE   K   ELEP  +G YVLL ++Y+A+      + ++ L+  +G++K PG 
Sbjct: 406 FHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGC 465

Query: 531 SRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK-EKGYVPQTKVVLYDLDAEEKER 589
           S +E+K  ++ F+  D  HP+ + +      + + ++ E+GYVP  K VL D++ EE E 
Sbjct: 466 SNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMES 525

Query: 590 IVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 649
            +  HSEKLA+AF LI+T     IRI KNLR+C+DCH  TK ISK   +EI+VRD  RFH
Sbjct: 526 ALSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFH 585

Query: 650 HFRNGVCSCGDYW 662
            F++G CSC DYW
Sbjct: 586 LFKDGTCSCKDYW 598



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 16/287 (5%)

Query: 107 TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166
           T    D   F    LI  ++    V DAR +FD+   R    W+A+      AG G E L
Sbjct: 153 TSAAVDASTF--NTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREAL 210

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
            ++ +M   G  +R D      VL AC         L+ GK +H  +  +     V + T
Sbjct: 211 GVFSQMQAQG--VRPDDTVLVGVLAACAQ----LGALEQGKWVHGYLKANNIRMTVFLGT 264

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
            L+DMYA+ G V     VF  M  KNV++W+ MI   A +G   ++L LF +  MES  +
Sbjct: 265 ALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQ--MESSGV 322

Query: 287 CPNSVTMVSVLQACAALAALEQGK-MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
            P+ +  +  L AC     +++G+ + +  +   G+   +     +V + AR G L   +
Sbjct: 323 KPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEAR 382

Query: 346 CVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
            + + M  K D + W +L++    H    K +++ + +I H +   P
Sbjct: 383 DMVEKMPMKPDALIWGALMAGCRFH----KNVELAEYVIKHWIELEP 425



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 16/215 (7%)

Query: 55  LIQSLCKQGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           ++    + G+ R+AL V S      + P+ T      +L +C    +L     VH +L  
Sbjct: 196 MVNGYVQAGDGREALGVFSQMQAQGVRPDDT--VLVGVLAACAQLGALEQGKWVHGYLKA 253

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           N      FL T L+++Y+    V     VF+  + + +  W  + + L + GRG + L L
Sbjct: 254 NNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTL 313

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL-RHGYNGIVHIMTT 227
           + +M    +G++ D   +   L AC  +     L+  G+E+  S++  +G    +     
Sbjct: 314 FSQME--SSGVKPDDIAFIGALCACTHT----GLVDKGRELFNSMVNNYGIKPKIEHYGC 367

Query: 228 LIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMIA 261
           ++D+ AR G +  A  +  +M +K + + W A++A
Sbjct: 368 MVDLLARNGLLSEARDMVEKMPMKPDALIWGALMA 402


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/571 (36%), Positives = 327/571 (57%), Gaps = 20/571 (3%)

Query: 100 LNVHSHLTDNGF-------DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
           + +H+HL   G            FL    +++ SH        H+       + +  N++
Sbjct: 39  IQLHAHLLRTGLLIFSPVTTTSAFLSLAAVSLPSHRALAVLDHHLTTPHYLPSTFQCNSI 98

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
            RAL+      + L    R+   G   R + FT   +LK      C    L H +++HA+
Sbjct: 99  LRALS---DPSDALRFLCRVRALGR--RGNAFTLAILLK----PRCS---LAHARQLHAN 146

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
           V+  G+     + T+L+  YA  G    A  +F +M V++ V+W+ +I CYARN    +A
Sbjct: 147 VVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDA 206

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
           L+LF EM  +  +  P+ VT + +LQAC++L AL+ G+ +  Y    G    L V ++L+
Sbjct: 207 LKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLI 266

Query: 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI 392
           TMY RCG ++    VF    ++ VV+W ++IS    +G+G  AI +F+EMI   V+P   
Sbjct: 267 TMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQ 326

Query: 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII-E 451
           +F  VL ACSH+GLV+EG   F+ MR E+ ++P+V HY C+VDL+GRA  L+EA + +  
Sbjct: 327 TFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTN 386

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
           ++++ P   +W +LLG+CRIH +V+L ER    L EL+   AG+YVLL + YAA   W +
Sbjct: 387 EMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSK 446

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGY 571
           V  +++L++  G+Q  PG + +E    ++ F++ D+ HP+  +++  L  +  +++  GY
Sbjct: 447 VSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGY 506

Query: 572 VPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKF 631
           VP     L+DLD+E KE  +  HSEKLA+AF L+ T +   IR+ KNLR+C DCH+FTK 
Sbjct: 507 VPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKM 566

Query: 632 ISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            S    + ++VRD  RFHHF+ G CSC DYW
Sbjct: 567 FSAIYRRIVIVRDRTRFHHFQGGKCSCNDYW 597



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 136/280 (48%), Gaps = 9/280 (3%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           SL+ A  +H+++   G  +D  L T L+  Y++    D AR +FD+   R    WN L  
Sbjct: 136 SLAHARQLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLIT 195

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
                 R ++ L+L+  M G  +    D  T   +L+AC  SS G   L  G+++ A   
Sbjct: 196 CYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQAC--SSLG--ALDFGEQVWAYAE 251

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
            HGY G + +  +LI MY R GCV  A  VFS    K+VV+W+AMI+  A NG   +A+ 
Sbjct: 252 EHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAIS 311

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVT 333
           +F EMI    D+ P+  T   VL AC+    +++G +         GL   +     +V 
Sbjct: 312 VFEEMIRS--DVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVD 369

Query: 334 MYARCGKL-ELGQCVFDHMD-KRDVVSWNSLISSYGVHGY 371
           +  R G L E  + V + M    D   W +L+ +  +HG+
Sbjct: 370 LMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGH 409


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/554 (38%), Positives = 323/554 (58%), Gaps = 8/554 (1%)

Query: 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY 169
           GFD + F+ + L ++YS    + +A  VFD+  ++    W A+       G  E  +  +
Sbjct: 71  GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 130

Query: 170 RRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLI 229
           R M   G  + +D+  +  VL A    S G       K IH  V + G+   V +   LI
Sbjct: 131 RDMKREGL-VGADQHVFCSVLSA----SGGLKDGWLSKSIHCCVTKAGFELEVAVRNALI 185

Query: 230 DMYARFGCVMYAGFVFS-QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           DMYA+   V  A  V        NVVS ++MI  Y       EAL ++ E+  +  +  P
Sbjct: 186 DMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVE--P 243

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           N  T  S+++ CA  A LEQG  +H  +++  L     V S LV MY +CG + L   +F
Sbjct: 244 NEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLF 303

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           + ++ R  ++WN++I+ +  HG+G +AIQ F  MIY G+ P+ I+FVS+L ACSHAGLV+
Sbjct: 304 NEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVD 363

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EG   F SM++ H I P  EHY+C++D  GRA +L+EA K I ++ I+P    W SLLG+
Sbjct: 364 EGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGA 423

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           CR+  + EL E A++ L +LEP N G +V L+ +YA+   W++VK V++L+    ++K+P
Sbjct: 424 CRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLP 483

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S ++  +K + F S D  HPQ + ++  L  L+  +KE+GY+P T  +  +L+   KE
Sbjct: 484 GFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKE 543

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           RI+  HSE++AVAF LI+    + I + KNLR+C DCH+  KFI K   ++I+VRD +RF
Sbjct: 544 RILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRF 603

Query: 649 HHFRNGVCSCGDYW 662
           HHF NG CSCGDYW
Sbjct: 604 HHFVNGRCSCGDYW 617



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 151/325 (46%), Gaps = 14/325 (4%)

Query: 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNG 267
           ++H   +R G++  + + + L DMY++ G +  A  VF QM  K+ V+W+AMI  YA+NG
Sbjct: 62  QLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNG 121

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
               A+  FR+M  E   +  +     SVL A   L      K IH  + + G +  + V
Sbjct: 122 SLEAAVLSFRDMKREGL-VGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAV 180

Query: 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY-----GGKAIQIFKEM 382
            +AL+ MYA+   +E    V     K D   WN +  +  + GY       +A+ I+ E+
Sbjct: 181 RNALIDMYAKSMDVESASRVL----KIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVEL 236

Query: 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442
              GV P+  +F S++  C+   L+E+G  L   + K  +IR S    + +VD+ G+   
Sbjct: 237 RRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVG-STLVDMYGKCGL 295

Query: 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF--ELEPTNAGNYVLLA 500
           +  + ++  ++        W +++     H +   A +A  R+    + P +     LL 
Sbjct: 296 ISLSMQLFNEIEYRT-DIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLT 354

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQ 525
               A  + + +K    + EA G++
Sbjct: 355 ACSHAGLVDEGLKYFYSMKEAHGIE 379



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 161/366 (43%), Gaps = 53/366 (14%)

Query: 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAG 160
           ++H  +T  GF+ +  +   LI++Y+    V+ A  V     +     WN +     + G
Sbjct: 164 SIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVL----KIDPGGWNVVSGTSMIDG 219

Query: 161 R-----GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
                  EE L +Y  +     G+  + FT++ ++K C       +LL+ G ++HA V++
Sbjct: 220 YIETDCVEEALVIYVELR--RQGVEPNEFTFSSMIKGCAMQ----ALLEQGAQLHAQVIK 273

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
                   + +TL+DMY + G +  +  +F+++  +  ++W+A+I  +A++G   EA++ 
Sbjct: 274 TDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQA 333

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVTM 334
           F  MI     + PN +  VS+L AC+    +++G K  +      G++      S ++  
Sbjct: 334 FDRMIYSG--IRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDT 391

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394
           Y R G+L+                               +A +   EM    + P+   +
Sbjct: 392 YGRAGRLD-------------------------------EAYKFISEM---PIKPNAYGW 417

Query: 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE-HYACMVDLLGRANKLEEAAKIIEDL 453
            S+LGAC   G  E G++  +++ K       +    + +   LG+   ++   K++ D 
Sbjct: 418 CSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDS 477

Query: 454 RIEPGP 459
           RI+  P
Sbjct: 478 RIKKLP 483



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 15/233 (6%)

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M  +N VSW+ +++  ++N M   A  L     M    + P    + S  +A AAL A  
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLM--HADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPL 58

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
            G  +H   +R G D+ L V S L  MY++CG L     VFD M ++D V+W ++I  Y 
Sbjct: 59  PGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYA 118

Query: 368 VHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMR---KEHMI 423
            +G    A+  F++M   G V      F SVL A   +G +++G  L +S+     +   
Sbjct: 119 KNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA---SGGLKDG-WLSKSIHCCVTKAGF 174

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE 476
              V     ++D+  ++  +E A+++   L+I+PG   W  + G+  I   +E
Sbjct: 175 ELEVAVRNALIDMYAKSMDVESASRV---LKIDPGG--WNVVSGTSMIDGYIE 222



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 11/196 (5%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           +EPN  + T+  ++  C     L     +H+ +      +D F+ + L+++Y     +  
Sbjct: 241 VEPN--EFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISL 298

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           +  +F++   RT   WNA+       G G E ++ + RM    +GIR +   +  +L AC
Sbjct: 299 SMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRM--IYSGIRPNHIAFVSLLTAC 356

Query: 194 VASSCGFSLLKHG-KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK- 251
             +     L+  G K  ++    HG        + +ID Y R G +  A    S+M +K 
Sbjct: 357 SHA----GLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKP 412

Query: 252 NVVSWSAMI-ACYARN 266
           N   W +++ AC  R 
Sbjct: 413 NAYGWCSLLGACRMRG 428


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/571 (36%), Positives = 327/571 (57%), Gaps = 20/571 (3%)

Query: 100 LNVHSHLTDNGF-------DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNAL 152
           + +H+HL   G            FL    +++ SH        H+       + +  N++
Sbjct: 53  IQLHAHLLRTGLLIFSPVTTTSAFLSLAAVSLPSHRALAVLDHHLTTPHYLPSTFQCNSI 112

Query: 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212
            RAL+      + L    R+   G   R + FT   +LK      C    L H +++HA+
Sbjct: 113 LRALS---DPSDALRFLCRVRALGR--RGNAFTLAILLK----PRCS---LAHARQLHAN 160

Query: 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272
           V+  G+     + T+L+  YA  G    A  +F +M V++ V+W+ +I CYARN    +A
Sbjct: 161 VVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDA 220

Query: 273 LELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332
           L+LF EM  +  +  P+ VT + +LQAC++L AL+ G+ +  Y    G    L V ++L+
Sbjct: 221 LKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLI 280

Query: 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI 392
           TMY RCG ++    VF    ++ VV+W ++IS    +G+G  AI +F+EMI   V+P   
Sbjct: 281 TMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQ 340

Query: 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII-E 451
           +F  VL ACSH+GLV+EG   F+ MR E+ ++P+V HY C+VDL+GRA  L+EA + +  
Sbjct: 341 TFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTN 400

Query: 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511
           ++++ P   +W +LLG+CRIH +V+L ER    L EL+   AG+YVLL + YAA   W +
Sbjct: 401 EMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSK 460

Query: 512 VKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGY 571
           V  +++L++  G+Q  PG + +E    ++ F++ D+ HP+  +++  L  +  +++  GY
Sbjct: 461 VSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGY 520

Query: 572 VPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKF 631
           VP     L+DLD+E KE  +  HSEKLA+AF L+ T +   IR+ KNLR+C DCH+FTK 
Sbjct: 521 VPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKM 580

Query: 632 ISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            S    + ++VRD  RFHHF+ G CSC DYW
Sbjct: 581 FSAIYRRIVIVRDRTRFHHFQGGKCSCNDYW 611



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 136/280 (48%), Gaps = 9/280 (3%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
           SL+ A  +H+++   G  +D  L T L+  Y++    D AR +FD+   R    WN L  
Sbjct: 150 SLAHARQLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLIT 209

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
                 R ++ L+L+  M G  +    D  T   +L+AC  SS G   L  G+++ A   
Sbjct: 210 CYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQAC--SSLG--ALDFGEQVWAYAE 265

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
            HGY G + +  +LI MY R GCV  A  VFS    K+VV+W+AMI+  A NG   +A+ 
Sbjct: 266 EHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAIS 325

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-KMIHGYILRRGLDSILPVVSALVT 333
           +F EMI    D+ P+  T   VL AC+    +++G +         GL   +     +V 
Sbjct: 326 VFEEMIRS--DVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVD 383

Query: 334 MYARCGKL-ELGQCVFDHMD-KRDVVSWNSLISSYGVHGY 371
           +  R G L E  + V + M    D   W +L+ +  +HG+
Sbjct: 384 LMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGH 423


>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Brachypodium distachyon]
          Length = 884

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/519 (38%), Positives = 310/519 (59%), Gaps = 14/519 (2%)

Query: 145 TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK 204
           + +  N++ R L+ +    + L   RRM   G   R + F+   +LK C         L 
Sbjct: 379 STFCCNSILRCLSES----DALSFLRRMRTLGR--RGNAFSLAILLKPC-------RTLS 425

Query: 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYA 264
           H +++HA+V+  G+     + T+L+  YA  G    A  VF +M +K+ V+W+ +I CYA
Sbjct: 426 HARQLHANVVIEGHLRDSLLATSLMRSYAICGVGDCARKVFDEMVMKDTVAWNVLITCYA 485

Query: 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSI 324
           RN    + L LF EM     ++ P+ VT + +LQAC +L AL+ G+ I  Y +  G    
Sbjct: 486 RNKRTKDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLGALDFGEQIWEYAVEHGYGCE 545

Query: 325 LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384
           L V ++++TMY RCG +E    VF H  ++ VV+W+++I     +G+G  AI  F+EM  
Sbjct: 546 LKVRNSVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANGFGEDAISAFEEMSR 605

Query: 385 HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444
            GV P   +F  VL ACSH+GLV+EG   F+ MR E+ + P+V HY C+VDL+GRA  L+
Sbjct: 606 SGVVPDGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNVRHYGCIVDLMGRAGLLD 665

Query: 445 EAAK-IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503
           EA + +++++++ P   +W +LLG+CRIH +V+L E+    L EL+   AG+YVLL + Y
Sbjct: 666 EAYELVVKEMKVAPDATIWRTLLGACRIHGHVDLGEKVISHLIELKAQQAGDYVLLLNTY 725

Query: 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLS 563
           AAA  W++V  V++L+    +Q  PG + +E+  +++ F++ D  HP+  +++  L  ++
Sbjct: 726 AAAGDWEKVAEVRKLMRENEIQTTPGCTTVELNGELHEFIADDASHPRKAEIYGKLDEIN 785

Query: 564 AEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCE 623
             ++  GYVP     L+DLD+E KE  +  HSEKLA+AF L+   +   IR+ KNLR+C 
Sbjct: 786 RHLRIAGYVPHVSSDLHDLDSEGKECALTYHSEKLAIAFALLVMPQRRPIRLAKNLRVCV 845

Query: 624 DCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           DCH+FTK  S   N+ ++VRD  RFHHF  G CSC DYW
Sbjct: 846 DCHNFTKVFSGVYNRLVIVRDRTRFHHFNGGQCSCNDYW 884



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 157/360 (43%), Gaps = 34/360 (9%)

Query: 29  PSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLL 88
           PS+ CC   L   +   +LS   +   +++L ++GN                 +  +LL 
Sbjct: 378 PSTFCCNSILRCLSESDALSFLRR---MRTLGRRGN---------------AFSLAILLK 419

Query: 89  SCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYV 148
            C    +LS A  +H+++   G  +D  L T L+  Y+     D AR VFD+   +    
Sbjct: 420 PC---RTLSHARQLHANVVIEGHLRDSLLATSLMRSYAICGVGDCARKVFDEMVMKDTVA 476

Query: 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208
           WN L        R ++ L L+  M    + ++ D  T   +L+AC +       L  G++
Sbjct: 477 WNVLITCYARNKRTKDTLWLFDEMRRGESEVKPDEVTCILLLQACTS----LGALDFGEQ 532

Query: 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268
           I    + HGY   + +  ++I MY R GCV  A  VF     K+VV+WSAMI   A NG 
Sbjct: 533 IWEYAVEHGYGCELKVRNSVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANGF 592

Query: 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVV 328
             +A+  F E  M    + P+  T   VL AC+    +++G     + + R    ++P V
Sbjct: 593 GEDAISAFEE--MSRSGVVPDGQTFTGVLSACSHSGLVDEG--FRFFDMMRYEYKMMPNV 648

Query: 329 ---SALVTMYARCGKL-ELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383
                +V +  R G L E  + V   M    D   W +L+ +  +HG+     ++   +I
Sbjct: 649 RHYGCIVDLMGRAGLLDEAYELVVKEMKVAPDATIWRTLLGACRIHGHVDLGEKVISHLI 708



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 112/272 (41%), Gaps = 49/272 (18%)

Query: 75  EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           E  P + T  LLL +CT   +L     +  +  ++G+  +  +   +I +Y+    V+ A
Sbjct: 506 EVKPDEVTCILLLQACTSLGALDFGEQIWEYAVEHGYGCELKVRNSVITMYTRCGCVEKA 565

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
             VF  T ++++  W+A+   L   G GE+ +  +  M  + +G+  D  T+T VL AC 
Sbjct: 566 YQVFCHTPQKSVVTWSAMIMGLAANGFGEDAISAFEEM--SRSGVVPDGQTFTGVLSACS 623

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
            S                               L+D   RF  +M     +    + NV 
Sbjct: 624 HSG------------------------------LVDEGFRFFDMMR----YEYKMMPNVR 649

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
            +  ++    R G+  EA EL    +++   + P++    ++L AC     ++ G+ +  
Sbjct: 650 HYGCIVDLMGRAGLLDEAYEL----VVKEMKVAPDATIWRTLLGACRIHGHVDLGEKVIS 705

Query: 315 YIL----RRGLDSILPVVSALVTMYARCGKLE 342
           +++    ++  D +L     L+  YA  G  E
Sbjct: 706 HLIELKAQQAGDYVL-----LLNTYAAAGDWE 732


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/616 (35%), Positives = 339/616 (55%), Gaps = 38/616 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  +T+  LL +    +S +    VH+H+   G  ++  + T L+  Y+       AR +
Sbjct: 41  PDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARAL 100

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
             +  R T  VWNAL        R  E    +  M   G        TY  VL AC    
Sbjct: 101 LSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAA--PTPVTYVSVLSAC-GKG 157

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYA------------------------ 233
            G  LL  G ++H  V+  G    + +   L+DMYA                        
Sbjct: 158 TGDVLL--GMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWT 215

Query: 234 -------RFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
                  R G V  A  +F +M  ++ VSW+AMI  Y +     EALE+FREM  +  ++
Sbjct: 216 SLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREM--QCSNV 273

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
             +  TMVSV+ ACA L ALE G+ +  Y+ R+G+     V +AL+ MY++CG +E    
Sbjct: 274 SADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALD 333

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VF  M  RD  +W ++I    V+GYG +AI++F  MI    +P  ++F+ VL AC+HAGL
Sbjct: 334 VFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGL 393

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V++G+  F SMR+ + I P+V HY C++DL GRA K+ EA   I+ + + P   +WG+LL
Sbjct: 394 VDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLL 453

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +CR+H N E+ E  ++RL +++P N+  Y LL+++YA  + W++V+R++  +  +G++K
Sbjct: 454 AACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKK 513

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
            PG S IE+   ++ FV+ D+ HP  ++++  L ++  ++   GY P    V  ++  EE
Sbjct: 514 EPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEE 573

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
           K++++  HSEKLA+AF L+++     IRI KNLR+C DCH+  K IS+   +E++VRD  
Sbjct: 574 KQKVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRT 633

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHFR+G CSC DYW
Sbjct: 634 RFHHFRHGFCSCKDYW 649



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 118/292 (40%), Gaps = 46/292 (15%)

Query: 55  LIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG 110
           +I    +    R+AL++         +  + T   ++ +C    +L     V  +++  G
Sbjct: 248 MIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQG 307

Query: 111 FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYR 170
              D F+   LI++YS   S++ A  VF     R  + W A+   L + G GEE +E++ 
Sbjct: 308 IKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFH 367

Query: 171 RMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230
           RM   G     D  T+  VL AC  +     L+  G+E   S +R  YN           
Sbjct: 368 RM--IGVSETPDEVTFIGVLTACTHA----GLVDKGREFFLS-MRETYN----------- 409

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
                                NVV +  +I  + R G   EAL+   +M M      PNS
Sbjct: 410 ------------------IAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMT-----PNS 446

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342
               ++L AC      E G+++   +L+   ++   V + L  +YA+C + E
Sbjct: 447 TIWGTLLAACRVHGNSEIGELVTERLLQMDPENS-TVYTLLSNIYAKCNRWE 497


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/582 (36%), Positives = 324/582 (55%), Gaps = 8/582 (1%)

Query: 82  TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT 141
           T+   L +C      ++   +H  +   G   +  +   LI  Y     + +A+ VF + 
Sbjct: 364 TFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRM 423

Query: 142 RRRTIYVWNALFRALTLAGRGEEVLELYRRM-NGTGTGIRSDRFTYTYVLKACVASSCGF 200
            +     WNAL           E +  ++ M  G+ +G+  D  T   +L +C+      
Sbjct: 424 PKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGV--DYITIVNILGSCLTHE--- 478

Query: 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMI 260
            L+K+G  IHA  +  G++   H+ ++LI MYA+ G +  + ++F Q+  K    W+A+I
Sbjct: 479 DLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAII 538

Query: 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG 320
           A  AR G   EAL+L   M   S  +  +     + L   A LA LE+G+ +HG  ++ G
Sbjct: 539 AANARYGFGEEALKLVVRM--RSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLG 596

Query: 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380
            +    +++A + MY +CG+L+    +      R  +SWN+LIS    HG   KA + F 
Sbjct: 597 FELDHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFH 656

Query: 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440
           +M+  GV P+ +SFV +L ACSH GLV+EG   + SM   + I+P +EH  CM+DLLGR+
Sbjct: 657 DMLKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRS 716

Query: 441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500
            +L EA   I ++ I P   VW SLL SCRI+ N++L  +A+K L EL+P++   YVL +
Sbjct: 717 GRLVEAEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYS 776

Query: 501 DVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLI 560
           +V+A    W++V+ V+  + A  +QK P  S ++ K  +  F   D+ HPQ EQ++  L+
Sbjct: 777 NVFATIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLL 836

Query: 561 NLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLR 620
            L   + E GYVP T   L D D E+KE  +  HSE++A+AFGLIN  +G T+RI KNLR
Sbjct: 837 GLMKIVGEAGYVPDTSYSLQDTDEEQKEHNMWSHSERIALAFGLINIPEGSTVRIFKNLR 896

Query: 621 LCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           +C DCHSF KF+S    ++I++RD  RFHHF NG CSC DYW
Sbjct: 897 VCGDCHSFFKFVSGVLGRKIVLRDPYRFHHFTNGNCSCSDYW 938



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/475 (24%), Positives = 230/475 (48%), Gaps = 35/475 (7%)

Query: 47  LSSRNK---NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLS-D 98
           +S RN+   N ++    + G+  +A+    D+  I   P+      L+ +C   + ++ +
Sbjct: 18  MSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMIASLVTACNKSSIMAKE 77

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
               H      G   D F+ T  ++ Y+ +  V +A+ +F++   R +  W +L  + + 
Sbjct: 78  GFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSD 137

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL-LKHGKEIHASVLRHG 217
            G  +EV+  Y+RM   G     +         A V SSCGF + +  G ++    L+ G
Sbjct: 138 NGSKKEVINTYKRMRHEGICCNENNI-------ALVISSCGFLMDIILGHQLLGHALKFG 190

Query: 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFR 277
               V    +LI M+   G +  A  +F++M  ++ +SW+++I+  A+N +  E+   F 
Sbjct: 191 LETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFH 250

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337
            M +   ++  N  T+  +L  C ++  L+ GK +HG  ++ GL+S + + + L+++Y+ 
Sbjct: 251 WMRLVHEEI--NYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSD 308

Query: 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
            G+ +  + +F  M +RD++SWNS+++ Y   G    A+++F EM++     + ++F S 
Sbjct: 309 AGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSA 368

Query: 398 LGACSHAGLVEEGKMLFE-----SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
           L AC        GK+L        ++ E +I  +      ++   G+ +K+ EA K+ + 
Sbjct: 369 LAACLDPEFFTNGKILHGFVVVLGLQDELIIGNT------LITFYGKCHKMAEAKKVFQ- 421

Query: 453 LRIEPGPKV-WGSLLGSCRIHCNVELAER-ASKRLFELEPTNAGNYVLLADVYAA 505
            R+    KV W +L+G      N EL E  A+ +L     T+  +Y+ + ++  +
Sbjct: 422 -RMPKLDKVTWNALIGG--FANNAELNEAVAAFKLMREGSTSGVDYITIVNILGS 473



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 124/242 (51%), Gaps = 7/242 (2%)

Query: 124 VYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183
           +YS F  ++ A+ VFD+   R    WN +       G   E +  +R +   G GI+   
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDI--CGIGIKPSG 58

Query: 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243
           F    ++ AC  SS    + K G + H   ++ G    V + T+ +  YA +G V  A  
Sbjct: 59  FMIASLVTACNKSSI---MAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQK 115

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           +F++M  +NVVSW++++  Y+ NG   E +  ++ M  E   +C N   +  V+ +C  L
Sbjct: 116 MFNEMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEG--ICCNENNIALVISSCGFL 173

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363
             +  G  + G+ L+ GL++ +   ++L+ M+  CG +     +F+ M++RD +SWNS+I
Sbjct: 174 MDIILGHQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSII 233

Query: 364 SS 365
           S+
Sbjct: 234 SA 235



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 15/244 (6%)

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC--- 287
           MY++FG + YA  VF +M+ +N  SW+ M++ Y R G   EA+  FR       D+C   
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFR-------DICGIG 53

Query: 288 --PNSVTMVSVLQACAALAAL-EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344
             P+   + S++ AC   + + ++G   HG+ ++ GL   + V ++ V  YA  G +   
Sbjct: 54  IKPSGFMIASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNA 113

Query: 345 QCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404
           Q +F+ M  R+VVSW SL+ SY  +G   + I  +K M + G+  +  +   V+ +C   
Sbjct: 114 QKMFNEMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFL 173

Query: 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464
             +  G  L     K   +   V     ++ + G    + EA  I  ++  E     W S
Sbjct: 174 MDIILGHQLLGHALK-FGLETKVSAANSLIFMFGGCGDINEACSIFNEMN-ERDTISWNS 231

Query: 465 LLGS 468
           ++ +
Sbjct: 232 IISA 235


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/603 (35%), Positives = 340/603 (56%), Gaps = 27/603 (4%)

Query: 74  IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133
           +EPN    T+   L  C     L+D   +H  +  +   QD  L   L+N+Y   D + +
Sbjct: 127 VEPNVV--TFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVE 184

Query: 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           AR VF+  + R +  + A+  A   AG   E LEL+ RM+     I  + +T+  +L A 
Sbjct: 185 ARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKV-EAIEPNAYTFATILGAV 243

Query: 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV 253
                G   L+ G+++H  +   G++  V +   L+ MY + G  + A  VF  M  +NV
Sbjct: 244 E----GLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNV 299

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313
           +SW++MIA YA++G   EAL LF+ M     D+ P+ V+  S L ACA L AL++G+ IH
Sbjct: 300 ISWTSMIAAYAQHGNPQEALNLFKRM-----DVEPSGVSFSSALNACALLGALDEGREIH 354

Query: 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373
             ++   L S   + ++L++MYARCG L+  + VF+ M  RD  S N++I+++  HG   
Sbjct: 355 HRVVEANLASP-QMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKK 413

Query: 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433
           +A++I+++M   G+    I+FVSVL ACSH  LV + +   +S+  +H + P VEHY CM
Sbjct: 414 QALRIYRKMEQEGIPADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCM 473

Query: 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493
           VD+LGR+ +L +A +++E +  +     W +LL  C+ H +++  ERA++++FEL P   
Sbjct: 474 VDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAET 533

Query: 494 GNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQ-- 551
             YV L+++YAAA  +D+ +RV++ +E RG+ +    S IE+  +++ F S      Q  
Sbjct: 534 LPYVFLSNMYAAAKRFDDARRVRKEMEERGVTRPVAVSYIEIDNELHMFTSGGRDEQQEG 593

Query: 552 -----FEQLHALLINLSAEMKEKGYVPQTKVVLYDLDA----EEKERIVLGHSEKLAVAF 602
                 E++ +LL+ L   MK+ GYVP T+ V  +       EEK+R +  HSE+LA+A+
Sbjct: 594 HDGRTMERVRSLLVELLEPMKQAGYVPDTREVYLEQQGVTSEEEKQRSLCFHSERLAIAY 653

Query: 603 GLI---NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           GLI   +      +R+  + R+C  CHS  K +S    K I VRD +RFHHF  G CSCG
Sbjct: 654 GLIAAKDPDDSRPLRVVNSHRVCSGCHSAIKLLSDITEKRIFVRDGSRFHHFEKGACSCG 713

Query: 660 DYW 662
           D+W
Sbjct: 714 DHW 716



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 200/369 (54%), Gaps = 12/369 (3%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           L+ +CT   +L +   +H HL   GF  D  L T L+ +Y+   S+DDA+ VF+    + 
Sbjct: 36  LVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKD 95

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           ++ W+++  A   AGRGE  + LYRRM     G+  +  T+   L  C AS  G   L  
Sbjct: 96  LFAWSSIIAAYARAGRGEMAVVLYRRM--IAEGVEPNVVTFACALGGC-ASVAG---LAD 149

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           G+ IH  +L         +  +L++MY +   ++ A  VF  M  +NV S++AMI+ Y +
Sbjct: 150 GRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQ 209

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
            G   EALELF  M  +   + PN+ T  ++L A   L  LE+G+ +H ++  RG D+ +
Sbjct: 210 AGEHAEALELFSRM-SKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNV 268

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V +ALVTMY +CG     + VFD M  R+V+SW S+I++Y  HG   +A+ +FK M   
Sbjct: 269 VVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM--- 325

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
            V PS +SF S L AC+  G ++EG+ +   + + ++  P +E    ++ +  R   L++
Sbjct: 326 DVEPSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQME--TSLLSMYARCGSLDD 383

Query: 446 AAKIIEDLR 454
           A ++   ++
Sbjct: 384 ARRVFNRMK 392



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 168/334 (50%), Gaps = 12/334 (3%)

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
           GR  + LEL+  M   G  I +D+F  T ++ AC         L+ G+ +H  ++  G+ 
Sbjct: 9   GRPLQALELWGEMEERG--IVADKFIVTSLVAACTK----LQALEEGRRLHEHLIITGFR 62

Query: 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
             + + T L+ MYA+ G +  A  VF  M +K++ +WS++IA YAR G    A+ L+R M
Sbjct: 63  TDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRM 122

Query: 280 IMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
           I E  +  PN VT    L  CA++A L  G+ IH  IL   +     +  +L+ MY +C 
Sbjct: 123 IAEGVE--PNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI-YHGVSPSPISFVSVL 398
           ++   + VF+ M  R+V S+ ++IS+Y   G   +A+++F  M     + P+  +F ++L
Sbjct: 181 EMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 240

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
           GA    G +E+G+ +   +         V   A +V + G+     EA K+ + +     
Sbjct: 241 GAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNA-LVTMYGKCGSPVEARKVFDSMTAR-N 298

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492
              W S++ +   H N + A    KR+ ++EP+ 
Sbjct: 299 VISWTSMIAAYAQHGNPQEALNLFKRM-DVEPSG 331



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 115/196 (58%), Gaps = 3/196 (1%)

Query: 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILR 318
           MIA   R G   +ALEL+ EM  E   +  +   + S++ AC  L ALE+G+ +H +++ 
Sbjct: 1   MIAACVREGRPLQALELWGEM--EERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLII 58

Query: 319 RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378
            G  + +P+ +AL+ MYA+CG L+  + VF+ M+ +D+ +W+S+I++Y   G G  A+ +
Sbjct: 59  TGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVL 118

Query: 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438
           ++ MI  GV P+ ++F   LG C+    + +G+ + + +    + +  V   + ++++  
Sbjct: 119 YRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDS-LLNMYL 177

Query: 439 RANKLEEAAKIIEDLR 454
           + +++ EA K+ E ++
Sbjct: 178 KCDEMVEARKVFEGMK 193


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/516 (39%), Positives = 313/516 (60%), Gaps = 14/516 (2%)

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
           N + R    + R    LEL+RR          D  TY  +++AC         L+ G+ +
Sbjct: 88  NTVLRIAAGSPRPRVALELHRRRLAL-----PDTHTYPPLIQACAR----LLALREGECL 138

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK--NVVSWSAMIACYARNG 267
           HA   ++G+  +V +  +L+ +Y   G    A  VF +M V+  N+VSW++M+  +A NG
Sbjct: 139 HAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANG 198

Query: 268 MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327
              E L +F EM+    D  P+  T+VSVL ACA   AL  G+ +H Y+ + GL     V
Sbjct: 199 RPNEVLTVFWEML--GVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHV 256

Query: 328 VSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
            +AL+ +YA+CG +   + +F+ M   R VVSW SLI     +G+G +A+++F  M    
Sbjct: 257 SNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREK 316

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           + P+ I+ V VL ACSH GLV++G   F+ M++++ I P +EH  CMVDLLGRA ++EEA
Sbjct: 317 LVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEA 376

Query: 447 AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506
              I  + +EP   VW +LLGSC +H  +EL + A +RL EL+P ++G+YVLL+++YAA 
Sbjct: 377 YDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAV 436

Query: 507 DMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEM 566
            MW +V  +++ +    ++K PG S +E++  +Y FV  D  HP+ EQ++ +L  ++  +
Sbjct: 437 GMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERL 496

Query: 567 KEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCH 626
           + +GY+P+T  VL D++ EEKE  +  HSE+LA+AF L+ +  G  IRI KNLR+C DCH
Sbjct: 497 RREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCH 556

Query: 627 SFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
                ISK  ++EI+VRD +RFHHF+ G CSC DYW
Sbjct: 557 VAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 141/301 (46%), Gaps = 21/301 (6%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P  HTY  L+ +C    +L +   +H+    NGF    F+   L+++Y      + A  V
Sbjct: 114 PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKV 173

Query: 138 FDK--TRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA 195
           FD+   R R +  WN++  +    GR  EVL ++  M   G     D FT   VL AC  
Sbjct: 174 FDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEM--LGVDFAPDGFTIVSVLTACAE 231

Query: 196 SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNVV 254
               F  L  G+ +H  V + G     H+   LID+YA+ G V  A  +F +M + + VV
Sbjct: 232 ----FGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVV 287

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG----- 309
           SW+++I   A NG   EALELF   +ME   L P  +TMV VL AC+    ++ G     
Sbjct: 288 SWTSLIVGLAANGFGKEALELFS--LMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFD 345

Query: 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGV 368
           +M   Y    G+   +  +  +V +  R G++E        M  + + V W +L+ S  +
Sbjct: 346 RMKEDY----GISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAM 401

Query: 369 H 369
           H
Sbjct: 402 H 402



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 21/223 (9%)

Query: 53  NELIQSLCKQGNLRQALDV----LSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++ S    G   + L V    L ++  P   T   +L +C    +L+    VH ++  
Sbjct: 188 NSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEK 247

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR-RRTIYVWNALFRALTLAGRGEEVLE 167
            G  ++  +   LI++Y+   SV+DAR +F++    RT+  W +L   L   G G+E LE
Sbjct: 248 VGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALE 307

Query: 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSC-----GFSLLKHGKEIHASVLRHGYNGIV 222
           L+  M      +     T   VL AC  S C     GF      KE       +G +  +
Sbjct: 308 LFSLME--REKLVPTEITMVGVLYAC--SHCGLVDDGFRYFDRMKE------DYGISPRI 357

Query: 223 HIMTTLIDMYARFGCVMYA-GFVFSQMAVKNVVSWSAMIACYA 264
             +  ++D+  R G V  A  ++ +     N V W  ++   A
Sbjct: 358 EHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCA 400


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/585 (34%), Positives = 325/585 (55%), Gaps = 8/585 (1%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHV 137
           P ++ +  ++ SC+    + +    H +   +G     ++   LI +YS    V  A  V
Sbjct: 127 PNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSV 186

Query: 138 FDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASS 197
           + +     ++ +N +   L   G   E LE+  RM      I  D  TY      C    
Sbjct: 187 WYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRM--VDECIVWDNVTYVTAFGLC---- 240

Query: 198 CGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257
                L+ G ++H  + R G      + + +IDMY + G ++ A  VF+++  KNVVSW+
Sbjct: 241 SHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWT 300

Query: 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317
           A++A Y++NG   EAL  F EM  E   L PN  T   +L +CA ++AL  GK++H  I 
Sbjct: 301 AILAAYSQNGCFEEALNFFPEM--EVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIK 358

Query: 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQ 377
           + G +  + V +AL+ MY++ G +E    VF  M  RD ++W+++I     HG G +A+ 
Sbjct: 359 KSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALV 418

Query: 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437
           +F+EM+     P  ++FV VL AC+H G V+EG      + K+  I P VEHY C+V LL
Sbjct: 419 VFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLL 478

Query: 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497
            +A +L+EA   ++   ++     W +LL +C +H N  L ++ ++ + +++P + G Y+
Sbjct: 479 CKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYI 538

Query: 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHA 557
           LL+++YA A  WD V ++++L+  R ++K PG S IE++  ++ FVS  + HP+  Q++ 
Sbjct: 539 LLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYE 598

Query: 558 LLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITK 617
            +  L   ++  GYVP    V +D++ E+K   V  HSEKLA+A+GL+ T  G  IR+ K
Sbjct: 599 KVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIK 658

Query: 618 NLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NLR+C DCHS  K ISK  N+ I+VRD NRFH F +G CSC DYW
Sbjct: 659 NLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 188/383 (49%), Gaps = 19/383 (4%)

Query: 77  NPTQHTYELLLLSCTHHNSLSDALNVHSHL--TDNGFDQDPFLVTKLINVYSHFDSVDDA 134
           +P +HT +LL +S    N L     +H+HL  T+     +   V  LIN+Y+  D +  A
Sbjct: 23  HPLEHTIQLLKVSADTKN-LKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVA 81

Query: 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194
           R +FD  R+R +  W AL       G   EVL L++ M      +R + + +  ++ +C 
Sbjct: 82  RILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDY-MRPNEYIFATIISSCS 140

Query: 195 ASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254
            S      +  G + H   L+ G     ++   LI MY+R   V  A  V+ ++   +V 
Sbjct: 141 DS----GQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVF 196

Query: 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHG 314
           S++ +I     NG   EALE+   M+ E   +  ++VT V+    C+ L  L  G  +H 
Sbjct: 197 SYNIIINGLLENGYPSEALEVLDRMVDEC--IVWDNVTYVTAFGLCSHLKDLRLGLQVHC 254

Query: 315 YILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGK 374
            + R G +    V SA++ MY +CG +   + VF+ +  ++VVSW +++++Y  +G   +
Sbjct: 255 RMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEE 314

Query: 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK----EHMIRPSVEHY 430
           A+  F EM   G+ P+  +F  +L +C+    +  GK+L   ++K    +H+I  +    
Sbjct: 315 ALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNA--- 371

Query: 431 ACMVDLLGRANKLEEAAKIIEDL 453
             ++++  ++  +E A K+  ++
Sbjct: 372 --LINMYSKSGSIEAAHKVFLEM 392



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 131/262 (50%), Gaps = 16/262 (6%)

Query: 203 LKHGKEIHASVL---RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM 259
           LK GK IHA ++   +   + IV +  +LI++YA+   +M A  +F  M  +NVVSW A+
Sbjct: 41  LKFGKMIHAHLIITNQATKDNIVQV-NSLINLYAKCDQIMVARILFDGMRKRNVVSWGAL 99

Query: 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319
           +A Y  NG+  E L LF+ MI   + + PN     +++ +C+    + +G   HGY L+ 
Sbjct: 100 MAGYFHNGLVLEVLRLFKTMISVDY-MRPNEYIFATIISSCSDSGQVVEGWQCHGYALKS 158

Query: 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF 379
           GL     V +AL+ MY+R   ++    V+  +   DV S+N +I+    +GY  +A+++ 
Sbjct: 159 GLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVL 218

Query: 380 KEMIYHGVSPSPISFVSVLGACSH-----AGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434
             M+   +    +++V+  G CSH      GL    +M       +  +  ++      +
Sbjct: 219 DRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAI------I 272

Query: 435 DLLGRANKLEEAAKIIEDLRIE 456
           D+ G+   +  A K+   L+ +
Sbjct: 273 DMYGKCGNILNARKVFNRLQTK 294


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/533 (37%), Positives = 321/533 (60%), Gaps = 12/533 (2%)

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
           D R +FD+   + +  W A+  A   A + EE L L+++M     G+ +D          
Sbjct: 10  DCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQE-EGLLADSIAVV----- 63

Query: 193 CVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251
            VAS+ G    +K+   +H    R      + +  +++ M+ + G    A  VF  M  +
Sbjct: 64  SVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMER 123

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311
           +V+SW++M++ Y +NG A EAL LF EM     D  P  VT + ++ ACA L     G+ 
Sbjct: 124 DVISWNSMLSGYTQNGQATEALLLFDEM--RDSDCQPTPVTALIMVSACAYLGFRHLGRK 181

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM--DKRDVVSWNSLISSYGVH 369
            H +I+   ++    + +AL+ MYA+CG LE    +F+ +   +R+  SWN LIS YG+H
Sbjct: 182 FHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMH 241

Query: 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429
           G+G +A+++F  M   GV P+  +F S+L ACSHAGL++EG+  F  M++  +     +H
Sbjct: 242 GHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLED-KH 300

Query: 430 YACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489
           +AC+VD+LGRA  L+EA  +I+++   P   VWG+LL +C+IH N+EL + A+  L +LE
Sbjct: 301 HACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQLE 360

Query: 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFH 549
           P + G YVL++++YAA++ W EV ++++ ++ +GL+K    S IE  + +  F + D+ +
Sbjct: 361 PNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQEN 420

Query: 550 PQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSK 609
           P   +++  + +L+ EMK  GYVP     L+D++ E+KER++  HSEKLAVAFG++    
Sbjct: 421 PYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKIDP 480

Query: 610 GETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           G  IR+TKNLR+C DCHS  K+IS    ++I+VRD NRFHHF+ G CSC DYW
Sbjct: 481 GMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 138/266 (51%), Gaps = 7/266 (2%)

Query: 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           MYA+ G  +    +F +M+ K++V W+AMI  Y +     EAL LF++M  E   L  +S
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEE-GLLADS 59

Query: 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350
           + +VSV  A   L  ++    +HGY  R+ L   L V ++++ M+ +CG  E  + VFD 
Sbjct: 60  IAVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDM 119

Query: 351 MDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEG 410
           M +RDV+SWNS++S Y  +G   +A+ +F EM      P+P++ + ++ AC++ G    G
Sbjct: 120 MMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLG 179

Query: 411 KMLFESMRKEHM-IRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGS 468
           +   + +    M I  ++ +   ++D+  +   LE+A  +   +   E     W  L+  
Sbjct: 180 RKFHDFIVDSRMEIDTNLSN--ALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISG 237

Query: 469 CRIHCNVELAERASKRLFE--LEPTN 492
             +H + + A     R+ E  +EP +
Sbjct: 238 YGMHGHGKEALELFSRMQEEGVEPNH 263



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 155/367 (42%), Gaps = 56/367 (15%)

Query: 95  SLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFR 154
            + +A  VH +       ++  +   ++ +++   + + AR VFD    R +  WN++  
Sbjct: 74  DVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLS 133

Query: 155 ALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH-GKEIHASV 213
             T  G+  E L L+  M       R      T V    + S+C +   +H G++ H  +
Sbjct: 134 GYTQNGQATEALLLFDEM-------RDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFI 186

Query: 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM--AVKNVVSWSAMIACYARNGMAFE 271
           +        ++   L+DMYA+ G +  A  +F+ +    +N  SW+ +I+ Y  +G   E
Sbjct: 187 VDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKE 246

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
           ALELF  M  E  +  PN  T  S+L AC+    +++G+     + R  +       + +
Sbjct: 247 ALELFSRMQEEGVE--PNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACV 304

Query: 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391
           V M  R G L+                               +A  + KEM      PSP
Sbjct: 305 VDMLGRAGLLQ-------------------------------EAFDLIKEM------PSP 327

Query: 392 IS---FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLGRANKLEEAA 447
            S   + ++L AC   G +E GK    ++ +   + P+   +Y  M ++   +NK +E  
Sbjct: 328 PSDGVWGALLLACKIHGNMELGKTAASNLLQ---LEPNHTGYYVLMSNIYAASNKWKEVW 384

Query: 448 KIIEDLR 454
           K+ +D++
Sbjct: 385 KLRQDMK 391



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 12/202 (5%)

Query: 53  NELIQSLCKQGNLRQAL----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++    + G   +AL    ++   +  PT  T  +++ +C +          H  + D
Sbjct: 129 NSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVD 188

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWNALFRALTLAGRGEEVL 166
           +  + D  L   L+++Y+    ++ A  +F+      R    WN L     + G G+E L
Sbjct: 189 SRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEAL 248

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           EL+ RM     G+  + FT+T +L AC  +     L+  G++  A + R           
Sbjct: 249 ELFSRMQ--EEGVEPNHFTFTSILSACSHA----GLIDEGRKCFAEMKRLSVTLEDKHHA 302

Query: 227 TLIDMYARFGCVMYAGFVFSQM 248
            ++DM  R G +  A  +  +M
Sbjct: 303 CVVDMLGRAGLLQEAFDLIKEM 324


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/581 (34%), Positives = 334/581 (57%), Gaps = 19/581 (3%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           LL++     S+S+   +H+ +  +   +D F+  +L+  Y+     +DA  +FD    + 
Sbjct: 45  LLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKD 104

Query: 146 IYVWNALF----RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201
           +  WN+L     R L ++      L  +  M      ++ +  T   ++ AC  +     
Sbjct: 105 LVSWNSLISGFSRCLHMS------LTAFYTMKFE-MSVKPNEVTILSMISACSGA----- 152

Query: 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIA 261
            L  GK IH   ++ G    V +  +LI+MY + G +  A  +F  +   N VSW+++IA
Sbjct: 153 -LDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIA 211

Query: 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321
               NG A E ++ F +M      +  +  T++++LQAC  L   +  + IHG +   G 
Sbjct: 212 AQVTNGCAREGIDYFNKM--RRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGF 269

Query: 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381
            + + + +AL+  YA+ G+L     VF  +   D V+W ++++ Y  HG G +AI++F+ 
Sbjct: 270 GAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFES 329

Query: 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441
           M   G+ P  ++F  +L ACSH+GLV EGK  F  M + + I P V+HY+CMVDLLGR  
Sbjct: 330 MANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCG 389

Query: 442 KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501
            L +A ++I+++ +EP   VWG+LLG+CR+H N+EL +  ++ L  +EP +  NY++L++
Sbjct: 390 LLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSN 449

Query: 502 VYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561
           +Y+A+  W +  +V+ LL+ RGL++ PG S IE   K + F   D  HP+ E++++ L  
Sbjct: 450 MYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEE 509

Query: 562 LSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRL 621
           L  ++++ GY  +T+ VL D++ E KE ++  HSEKLA+AFGL+ + +GE + ITKNLR+
Sbjct: 510 LLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRI 569

Query: 622 CEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           C DCHS  K IS    + I++RD  RFHHF +G CSC DYW
Sbjct: 570 CGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/420 (45%), Positives = 280/420 (66%), Gaps = 3/420 (0%)

Query: 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303
           VF  M  K++V+W+++I  +A NG   EAL L++ M  E  +  P+  TMVS+L ACA L
Sbjct: 63  VFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVE--PDGFTMVSLLSACAEL 120

Query: 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSL 362
           A L  G+  H Y+++ GL+  L   +AL+ +YA+CG +   + +FD M  +R+VVSW SL
Sbjct: 121 ATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSL 180

Query: 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422
           I    V+G+G +A++ FK+M   G+ PS I+FV VL ACSH G+V EG   F+ M++++ 
Sbjct: 181 IVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYD 240

Query: 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERAS 482
           I P +EHY CMVDLLGRA  L+EA   I+D+ ++P   +W +LLG+C IH ++ L   A 
Sbjct: 241 IVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFAR 300

Query: 483 KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSF 542
            RL +LEP ++G+YVLL+++YA+   W +V  V+R + + G++K PG S +E+   ++ F
Sbjct: 301 ARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEF 360

Query: 543 VSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAF 602
           V  D  HPQ E ++ +L+ ++ ++K  GYVP T  VL D++ EEKE  +  HSEK+A+AF
Sbjct: 361 VMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAF 420

Query: 603 GLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
            LINT  G  IRI KNLR+C DCH   K ISK   ++I+VRD +RFHHFR+G CSC DYW
Sbjct: 421 MLINTLPGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 144/311 (46%), Gaps = 30/311 (9%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
           +++P    H Y    +   +   +   LN+   L D    +D   +  +I  Y  F+S  
Sbjct: 4   AVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAY--FES-- 59

Query: 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192
            A  VF+    + I  WN++     L G+  E L LY+RM   G  +  D FT   +L A
Sbjct: 60  -AYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEG--VEPDGFTMVSLLSA 116

Query: 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-K 251
           C       + L  G+  H  +++ G N  +H    L+D+YA+ G +  A  +F +M + +
Sbjct: 117 CAE----LATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIER 172

Query: 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG-- 309
           NVVSW+++I   A NG   EALE F++  ME   L P+ +T V VL AC+    + +G  
Sbjct: 173 NVVSWTSLIVGLAVNGFGKEALEHFKD--MEREGLVPSEITFVGVLYACSHCGIVNEGFE 230

Query: 310 ---KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD----KRDVVSWNSL 362
              +M   Y        I+P +     M    G+  L +  +D++     + + V W +L
Sbjct: 231 YFKRMKEQY-------DIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTL 283

Query: 363 ISSYGVHGYGG 373
           + +  +HG+ G
Sbjct: 284 LGACTIHGHLG 294


>gi|356544972|ref|XP_003540920.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Glycine max]
          Length = 622

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/614 (35%), Positives = 348/614 (56%), Gaps = 28/614 (4%)

Query: 51  NKNELIQSLCKQGNLR--QALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           NKN L  SL  +  L     +D  S E + T   Y  LL  CT    L +   VH H+ +
Sbjct: 35  NKNLLRPSLNSKIGLHVLDLIDCGSFELDLT--LYNTLLKRCTQLGKLKEGKLVHFHMFN 92

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           + F  D  +   ++ +Y+   ++ D +HVF++  ++ +  W ++        R ++ L L
Sbjct: 93  SKFKDDLVIQNFVLFMYARCGNLKDTQHVFNEKLQKDMVTWTSMISGYAQNERAKDTLVL 152

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           + R+   GT +        ++L +                IHAS   +G +  V + ++L
Sbjct: 153 FPRILSEGTKLN------XFILSSL---------------IHASCWMYGCHSNVFVGSSL 191

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           ++M AR G +     VF     KN VSW+A+I  YA+ G   EAL L+  M ME++   P
Sbjct: 192 VNMXARCGYLGEEXLVFDNSWCKNEVSWNALIGGYAKKGEGEEALALYLRMQMEAYK--P 249

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
              T   +L +  ++  LEQGK +  ++++ G   ++ V + L+ MYA+ GK+   +  F
Sbjct: 250 IQFTYSGILSSYLSMGCLEQGKWLLAHLMKPGQKLVVYVGNTLLHMYAKLGKIRDVEKFF 309

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D + K DVVS NS+++ Y  HG G +A+Q F+EMI  G+ P+ I+ + VL +CSHA L++
Sbjct: 310 DKLVKVDVVSCNSMLTRYAQHGLGKEAMQQFEEMISFGIEPNDITVLFVLSSCSHARLLD 369

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
           EGK  F  MRK + I P V HYA ++DLLG A  L++A   IE++ IEP   + G+LLG 
Sbjct: 370 EGKHYFGLMRK-YSIEPKVSHYATIIDLLGXAGLLDQAESFIEEMPIEPIVAIXGALLGD 428

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
            ++H N ++   A++++FEL P+  G + LL ++YA+A  W +V +V ++++  G++K P
Sbjct: 429 SKMHKNTKMGAYAAQQVFELNPSCRGTHTLLVNMYASAGRWGDVAKVIKIMKDSGVKKEP 488

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
             S +E++  ++ FV+ D  HPQ E++H +   L+ ++KE GYVP T  VL  +D +EKE
Sbjct: 489 TCSXVEIENSVHVFVANDAAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKE 548

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
                H+EKLA+    +NT    T RI KN+R+  DCHS   +++    +EI+VRD NRF
Sbjct: 549 LNFQYHTEKLALTLAFLNTPPRSTTRIMKNIRVSGDCHSSINYVALVVKREIIVRDTNRF 608

Query: 649 HHFRNGVCSCGDYW 662
           HHFR+G CSCGDYW
Sbjct: 609 HHFRDGFCSCGDYW 622


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,235,149,347
Number of Sequences: 23463169
Number of extensions: 420208307
Number of successful extensions: 1120286
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7914
Number of HSP's successfully gapped in prelim test: 3349
Number of HSP's that attempted gapping in prelim test: 977465
Number of HSP's gapped (non-prelim): 50506
length of query: 662
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 513
effective length of database: 8,863,183,186
effective search space: 4546812974418
effective search space used: 4546812974418
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)