Query 006076
Match_columns 662
No_of_seqs 816 out of 4672
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 18:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4E-125 8E-130 1075.2 69.3 642 2-660 205-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 5E-123 1E-127 1032.9 71.2 605 50-662 88-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4.5E-80 9.7E-85 704.6 49.0 621 3-658 105-747 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.8E-67 4E-72 589.0 58.9 498 19-528 374-915 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.2E-61 4.8E-66 540.1 54.8 498 52-576 373-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 9.6E-61 2.1E-65 533.0 41.3 405 3-424 142-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-28 8.6E-33 282.8 53.7 477 27-524 378-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.9E-28 1.7E-32 280.3 53.2 485 18-523 332-833 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 9E-31 1.9E-35 215.4 7.0 106 529-652 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 1.3E-19 2.7E-24 212.8 51.7 475 27-521 43-665 (1157)
11 PRK11447 cellulose synthase su 99.9 4.4E-19 9.6E-24 208.3 53.2 377 123-520 277-738 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 7.7E-20 1.7E-24 182.1 32.6 446 53-517 52-514 (966)
13 PRK09782 bacteriophage N4 rece 99.9 9.2E-18 2E-22 188.4 49.7 469 27-523 59-707 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 5.5E-19 1.2E-23 176.1 29.3 417 85-522 53-485 (966)
15 TIGR00990 3a0801s09 mitochondr 99.8 6E-17 1.3E-21 178.7 45.1 417 83-521 130-570 (615)
16 PRK09782 bacteriophage N4 rece 99.8 5.6E-17 1.2E-21 182.2 45.3 481 26-524 122-742 (987)
17 PRK11788 tetratricopeptide rep 99.8 3.5E-18 7.5E-23 178.9 31.4 291 230-529 43-354 (389)
18 PRK11788 tetratricopeptide rep 99.8 2.3E-18 5E-23 180.2 29.7 290 91-392 46-354 (389)
19 PRK10049 pgaA outer membrane p 99.8 3.7E-16 8.1E-21 175.6 44.9 393 86-493 21-461 (765)
20 PRK15174 Vi polysaccharide exp 99.8 4.6E-16 1E-20 171.1 42.1 351 127-493 17-386 (656)
21 PRK10049 pgaA outer membrane p 99.8 1.1E-15 2.4E-20 171.8 44.7 395 112-522 12-456 (765)
22 TIGR00990 3a0801s09 mitochondr 99.8 2.9E-15 6.3E-20 165.3 44.9 435 52-521 130-596 (615)
23 PRK14574 hmsH outer membrane p 99.8 1.5E-14 3.3E-19 159.4 46.0 424 58-495 43-520 (822)
24 PRK15174 Vi polysaccharide exp 99.8 5.4E-15 1.2E-19 162.7 40.1 325 185-523 44-382 (656)
25 PRK14574 hmsH outer membrane p 99.8 4.5E-14 9.8E-19 155.8 46.5 428 82-523 37-514 (822)
26 KOG4422 Uncharacterized conser 99.7 9.4E-13 2E-17 126.7 38.9 301 81-393 117-470 (625)
27 KOG2002 TPR-containing nuclear 99.7 5.5E-13 1.2E-17 140.9 37.0 456 52-525 273-801 (1018)
28 KOG2002 TPR-containing nuclear 99.7 6.1E-13 1.3E-17 140.5 36.6 433 77-523 267-746 (1018)
29 KOG2003 TPR repeat-containing 99.6 2E-13 4.3E-18 131.9 27.7 410 85-508 206-709 (840)
30 KOG0495 HAT repeat protein [RN 99.6 6.6E-11 1.4E-15 119.9 42.7 461 55-535 412-891 (913)
31 KOG4422 Uncharacterized conser 99.6 9.2E-11 2E-15 113.2 35.5 357 71-453 198-587 (625)
32 PF13429 TPR_15: Tetratricopep 99.5 2.7E-14 5.8E-19 141.6 12.0 255 259-520 14-275 (280)
33 KOG2076 RNA polymerase III tra 99.5 4E-10 8.6E-15 118.9 41.6 470 27-508 154-720 (895)
34 KOG1915 Cell cycle control pro 99.5 1.1E-09 2.5E-14 107.1 37.7 429 116-561 74-535 (677)
35 KOG0495 HAT repeat protein [RN 99.5 1.4E-08 3E-13 103.5 45.0 488 19-533 254-791 (913)
36 KOG1126 DNA-binding cell divis 99.5 1.3E-11 2.9E-16 126.0 23.4 276 237-522 334-620 (638)
37 KOG1915 Cell cycle control pro 99.5 5.8E-09 1.3E-13 102.3 40.3 478 27-521 88-624 (677)
38 PRK10747 putative protoheme IX 99.4 1.2E-10 2.6E-15 120.9 30.4 274 235-520 97-388 (398)
39 KOG2076 RNA polymerase III tra 99.4 5.8E-10 1.3E-14 117.7 34.9 327 197-532 153-522 (895)
40 PRK10747 putative protoheme IX 99.4 2.9E-10 6.2E-15 118.2 31.1 286 159-489 97-391 (398)
41 KOG1126 DNA-binding cell divis 99.4 3.1E-11 6.8E-16 123.3 22.1 266 267-569 333-607 (638)
42 KOG2003 TPR repeat-containing 99.4 2E-10 4.4E-15 111.5 26.4 413 55-484 243-718 (840)
43 TIGR00540 hemY_coli hemY prote 99.4 9.9E-10 2.2E-14 114.8 34.1 274 203-485 100-396 (409)
44 KOG1155 Anaphase-promoting com 99.4 7.1E-09 1.5E-13 101.7 36.5 255 260-521 234-494 (559)
45 KOG1155 Anaphase-promoting com 99.4 8E-09 1.7E-13 101.3 35.2 238 203-451 243-490 (559)
46 KOG0547 Translocase of outer m 99.4 4.9E-09 1.1E-13 103.3 33.8 213 302-520 338-564 (606)
47 PF13429 TPR_15: Tetratricopep 99.4 6.4E-12 1.4E-16 124.6 12.8 253 154-417 16-274 (280)
48 KOG4318 Bicoid mRNA stability 99.3 3.1E-09 6.8E-14 111.7 31.3 105 428-533 492-604 (1088)
49 TIGR00540 hemY_coli hemY prote 99.3 1.7E-09 3.6E-14 113.1 29.6 282 158-453 96-396 (409)
50 KOG1173 Anaphase-promoting com 99.3 5.5E-09 1.2E-13 105.0 30.3 263 252-521 243-517 (611)
51 TIGR02521 type_IV_pilW type IV 99.3 6.6E-10 1.4E-14 106.9 23.9 197 324-521 30-231 (234)
52 PF13041 PPR_2: PPR repeat fam 99.3 8.2E-12 1.8E-16 87.0 6.7 50 354-403 1-50 (50)
53 COG2956 Predicted N-acetylgluc 99.2 1.9E-08 4E-13 94.4 28.1 285 159-487 48-346 (389)
54 KOG0547 Translocase of outer m 99.2 5.8E-08 1.3E-12 95.9 32.4 404 54-489 120-567 (606)
55 KOG2376 Signal recognition par 99.2 2.1E-07 4.6E-12 94.2 36.4 434 55-519 18-517 (652)
56 KOG1840 Kinesin light chain [C 99.2 1.2E-08 2.7E-13 105.7 27.8 231 290-520 199-477 (508)
57 COG3071 HemY Uncharacterized e 99.2 1.2E-07 2.7E-12 91.8 31.9 276 235-520 97-388 (400)
58 KOG4318 Bicoid mRNA stability 99.2 7.7E-10 1.7E-14 116.2 18.1 264 274-579 11-275 (1088)
59 PF13041 PPR_2: PPR repeat fam 99.2 4.7E-11 1E-15 83.2 6.3 50 251-302 1-50 (50)
60 KOG2047 mRNA splicing factor [ 99.2 2E-06 4.3E-11 88.1 41.4 382 27-418 117-613 (835)
61 COG3071 HemY Uncharacterized e 99.2 4.2E-08 9.1E-13 95.0 27.5 277 201-487 98-389 (400)
62 COG2956 Predicted N-acetylgluc 99.2 6.7E-08 1.5E-12 90.7 27.5 297 203-542 51-367 (389)
63 KOG1174 Anaphase-promoting com 99.1 6.5E-07 1.4E-11 86.8 32.8 304 180-493 191-505 (564)
64 TIGR02521 type_IV_pilW type IV 99.1 4.6E-08 9.9E-13 94.0 24.9 199 253-488 31-232 (234)
65 PRK12370 invasion protein regu 99.1 4.7E-08 1E-12 106.3 25.9 260 252-523 255-536 (553)
66 PRK11189 lipoprotein NlpI; Pro 99.1 3.3E-08 7.1E-13 98.3 22.2 211 305-524 41-267 (296)
67 KOG4162 Predicted calmodulin-b 99.1 7.5E-07 1.6E-11 93.2 32.3 409 110-533 318-793 (799)
68 KOG2047 mRNA splicing factor [ 99.1 9.9E-06 2.1E-10 83.2 39.4 429 83-520 105-613 (835)
69 KOG1840 Kinesin light chain [C 99.0 3.5E-08 7.5E-13 102.4 22.6 235 222-487 199-478 (508)
70 PRK12370 invasion protein regu 99.0 3.8E-08 8.3E-13 107.0 23.9 226 289-522 255-502 (553)
71 KOG1173 Anaphase-promoting com 99.0 6.6E-07 1.4E-11 90.4 28.5 283 146-467 244-530 (611)
72 PRK11189 lipoprotein NlpI; Pro 99.0 3.5E-07 7.5E-12 91.0 25.2 228 267-503 40-281 (296)
73 KOG1129 TPR repeat-containing 99.0 4.1E-08 8.8E-13 92.1 16.9 221 298-523 231-459 (478)
74 KOG3616 Selective LIM binding 99.0 1.5E-06 3.2E-11 89.9 29.3 432 20-523 538-1025(1636)
75 KOG3785 Uncharacterized conser 98.9 1.9E-06 4.1E-11 82.0 26.8 129 360-491 363-493 (557)
76 KOG3785 Uncharacterized conser 98.9 1.8E-06 3.9E-11 82.1 25.9 438 56-523 29-491 (557)
77 PF12569 NARP1: NMDA receptor- 98.9 1.8E-05 3.8E-10 83.6 36.2 254 255-517 196-515 (517)
78 COG3063 PilF Tfp pilus assembl 98.9 1.9E-07 4.2E-12 83.9 17.9 163 358-524 37-204 (250)
79 KOG1129 TPR repeat-containing 98.9 7.7E-08 1.7E-12 90.3 15.0 230 257-493 227-463 (478)
80 KOG3616 Selective LIM binding 98.8 8.9E-06 1.9E-10 84.4 28.7 190 302-518 744-933 (1636)
81 KOG1156 N-terminal acetyltrans 98.8 0.00017 3.6E-09 74.7 37.6 432 84-534 12-485 (700)
82 KOG0985 Vesicle coat protein c 98.8 0.0001 2.2E-09 79.5 36.9 157 339-518 1089-1245(1666)
83 KOG4162 Predicted calmodulin-b 98.8 1.4E-05 3E-10 84.0 29.8 408 75-494 318-789 (799)
84 PF12569 NARP1: NMDA receptor- 98.8 4.4E-06 9.5E-11 88.1 26.1 148 374-524 129-293 (517)
85 KOG1125 TPR repeat-containing 98.7 2.6E-07 5.7E-12 93.6 15.7 219 300-521 295-526 (579)
86 KOG0985 Vesicle coat protein c 98.7 0.00012 2.7E-09 78.9 35.3 443 11-519 865-1367(1666)
87 KOG1156 N-terminal acetyltrans 98.7 0.0006 1.3E-08 70.7 38.8 411 90-521 51-510 (700)
88 PF04733 Coatomer_E: Coatomer 98.7 1.5E-06 3.3E-11 85.2 18.5 247 233-492 12-269 (290)
89 cd05804 StaR_like StaR_like; a 98.7 3.6E-05 7.7E-10 79.4 29.9 294 223-523 7-337 (355)
90 KOG1127 TPR repeat-containing 98.7 1.5E-05 3.2E-10 85.8 26.2 172 343-519 801-993 (1238)
91 KOG1174 Anaphase-promoting com 98.7 0.00022 4.7E-09 69.8 31.8 384 116-521 98-499 (564)
92 PF04733 Coatomer_E: Coatomer 98.6 7.9E-07 1.7E-11 87.2 15.6 244 262-521 10-264 (290)
93 KOG0624 dsRNA-activated protei 98.6 5.4E-05 1.2E-09 72.1 26.7 188 299-492 164-374 (504)
94 COG3063 PilF Tfp pilus assembl 98.6 2E-05 4.4E-10 71.1 21.9 132 358-491 105-239 (250)
95 KOG2376 Signal recognition par 98.6 0.00038 8.3E-09 71.4 33.2 428 27-485 27-517 (652)
96 KOG3617 WD40 and TPR repeat-co 98.6 0.00041 9E-09 73.5 34.2 220 27-279 743-993 (1416)
97 KOG0548 Molecular co-chaperone 98.6 2.4E-05 5.2E-10 79.1 23.8 216 294-523 228-456 (539)
98 KOG1070 rRNA processing protei 98.6 1.3E-05 2.8E-10 89.1 23.2 200 322-525 1455-1666(1710)
99 PF12854 PPR_1: PPR repeat 98.6 1E-07 2.2E-12 59.5 4.3 33 217-249 2-34 (34)
100 cd05804 StaR_like StaR_like; a 98.6 0.00031 6.7E-09 72.4 32.9 91 258-351 119-212 (355)
101 TIGR03302 OM_YfiO outer membra 98.5 9E-06 1.9E-10 78.3 19.5 179 324-522 32-232 (235)
102 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 2.9E-12 59.0 4.3 33 320-352 2-34 (34)
103 PRK04841 transcriptional regul 98.5 0.00017 3.6E-09 84.5 33.0 296 226-523 413-761 (903)
104 PRK10370 formate-dependent nit 98.5 1.3E-05 2.9E-10 74.2 18.7 147 363-523 23-174 (198)
105 KOG4340 Uncharacterized conser 98.5 0.00028 6E-09 66.1 26.5 124 256-382 244-372 (459)
106 PRK04841 transcriptional regul 98.4 0.00035 7.5E-09 81.9 33.4 325 125-453 384-757 (903)
107 PRK15359 type III secretion sy 98.4 7.8E-06 1.7E-10 71.6 14.7 122 377-504 14-137 (144)
108 PRK15363 pathogenicity island 98.4 6.7E-06 1.5E-10 70.7 13.2 119 426-567 34-154 (157)
109 KOG1127 TPR repeat-containing 98.4 0.00029 6.3E-09 76.3 27.8 379 116-518 493-909 (1238)
110 KOG3617 WD40 and TPR repeat-co 98.4 0.00075 1.6E-08 71.6 29.3 359 113-518 724-1170(1416)
111 KOG0548 Molecular co-chaperone 98.4 0.00081 1.8E-08 68.4 28.4 234 256-505 227-472 (539)
112 KOG4340 Uncharacterized conser 98.4 9.6E-05 2.1E-09 69.1 20.1 302 185-518 12-335 (459)
113 PLN02789 farnesyltranstransfer 98.4 0.00016 3.6E-09 71.9 23.3 176 341-520 88-300 (320)
114 COG4783 Putative Zn-dependent 98.3 0.00022 4.8E-09 71.7 23.7 177 339-520 251-435 (484)
115 PRK10370 formate-dependent nit 98.3 0.00012 2.6E-09 67.8 19.4 155 332-497 23-182 (198)
116 PRK15359 type III secretion sy 98.3 1.3E-05 2.9E-10 70.1 12.2 107 412-523 14-122 (144)
117 KOG1128 Uncharacterized conser 98.3 5.3E-05 1.1E-09 79.4 18.1 209 296-522 404-616 (777)
118 KOG1128 Uncharacterized conser 98.2 4.9E-05 1.1E-09 79.6 17.3 190 320-524 393-584 (777)
119 COG5010 TadD Flp pilus assembl 98.2 8.2E-05 1.8E-09 68.8 16.9 133 388-522 63-197 (257)
120 TIGR03302 OM_YfiO outer membra 98.2 8.9E-05 1.9E-09 71.4 18.4 182 288-490 31-234 (235)
121 KOG1070 rRNA processing protei 98.2 0.00045 9.7E-09 77.5 25.0 224 183-413 1458-1693(1710)
122 PRK15179 Vi polysaccharide bio 98.2 0.00011 2.5E-09 80.6 20.7 140 354-497 84-226 (694)
123 COG5010 TadD Flp pilus assembl 98.2 0.0002 4.4E-09 66.3 18.3 155 360-517 70-226 (257)
124 TIGR00756 PPR pentatricopeptid 98.2 3.3E-06 7.1E-11 53.5 4.5 35 357-391 1-35 (35)
125 KOG2053 Mitochondrial inherita 98.2 0.021 4.5E-07 62.0 39.1 410 93-527 22-507 (932)
126 KOG3081 Vesicle coat complex C 98.1 0.0033 7.2E-08 58.4 23.8 245 234-491 20-274 (299)
127 KOG1125 TPR repeat-containing 98.1 0.00074 1.6E-08 69.2 21.4 209 203-418 301-525 (579)
128 TIGR02552 LcrH_SycD type III s 98.1 6.4E-05 1.4E-09 65.2 12.2 97 426-522 16-114 (135)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00018 3.8E-09 73.2 16.7 125 392-521 170-296 (395)
130 PRK15179 Vi polysaccharide bio 98.0 0.0007 1.5E-08 74.5 22.1 144 320-467 81-230 (694)
131 TIGR00756 PPR pentatricopeptid 98.0 7.3E-06 1.6E-10 51.9 3.9 35 147-183 1-35 (35)
132 COG4783 Putative Zn-dependent 98.0 0.0012 2.5E-08 66.7 20.8 179 323-523 272-455 (484)
133 KOG1914 mRNA cleavage and poly 98.0 0.028 6.2E-07 57.5 36.2 160 357-519 367-536 (656)
134 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 2.9E-10 50.3 4.5 33 357-389 2-34 (34)
135 PLN02789 farnesyltranstransfer 97.9 0.0011 2.3E-08 66.2 19.4 185 334-521 46-249 (320)
136 KOG1914 mRNA cleavage and poly 97.9 0.036 7.8E-07 56.8 32.2 123 50-175 21-166 (656)
137 PRK14720 transcript cleavage f 97.9 0.0014 3E-08 73.0 21.7 215 251-504 29-268 (906)
138 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00038 8.3E-09 70.7 16.2 127 327-457 171-298 (395)
139 PF07079 DUF1347: Protein of u 97.9 0.036 7.9E-07 55.6 29.6 412 91-521 17-523 (549)
140 KOG3060 Uncharacterized conser 97.9 0.0063 1.4E-07 56.2 21.1 162 327-493 54-225 (289)
141 TIGR02552 LcrH_SycD type III s 97.8 0.00066 1.4E-08 58.8 14.4 113 378-494 5-120 (135)
142 KOG3060 Uncharacterized conser 97.8 0.0037 7.9E-08 57.7 18.7 160 359-522 55-220 (289)
143 KOG0624 dsRNA-activated protei 97.8 0.037 8.1E-07 53.4 28.4 367 55-492 44-426 (504)
144 PF13812 PPR_3: Pentatricopept 97.8 3.1E-05 6.8E-10 48.6 3.8 34 146-181 1-34 (34)
145 KOG3081 Vesicle coat complex C 97.8 0.0096 2.1E-07 55.4 20.9 168 275-453 95-268 (299)
146 PF01535 PPR: PPR repeat; Int 97.8 3.3E-05 7.2E-10 47.2 3.5 31 357-387 1-31 (31)
147 PRK14720 transcript cleavage f 97.7 0.015 3.4E-07 64.9 25.8 240 179-470 26-268 (906)
148 cd00189 TPR Tetratricopeptide 97.7 0.00041 8.9E-09 55.2 10.5 92 430-521 3-96 (100)
149 PF09976 TPR_21: Tetratricopep 97.7 0.0015 3.2E-08 57.4 14.6 114 404-518 24-143 (145)
150 PF12895 Apc3: Anaphase-promot 97.6 9.1E-05 2E-09 58.0 4.7 77 441-518 3-83 (84)
151 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.001 2.3E-08 55.9 11.6 58 464-521 44-104 (119)
152 PF13414 TPR_11: TPR repeat; P 97.6 0.00023 5E-09 53.3 6.4 64 458-521 2-66 (69)
153 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0018 3.9E-08 54.5 12.8 104 393-496 4-113 (119)
154 PF01535 PPR: PPR repeat; Int 97.6 7.8E-05 1.7E-09 45.5 3.1 29 147-175 1-29 (31)
155 PF07079 DUF1347: Protein of u 97.5 0.13 2.9E-06 51.8 34.1 417 17-464 48-530 (549)
156 KOG2041 WD40 repeat protein [G 97.5 0.15 3.3E-06 53.8 27.3 253 61-353 675-951 (1189)
157 PF09976 TPR_21: Tetratricopep 97.5 0.0047 1E-07 54.1 14.6 84 298-381 56-143 (145)
158 PF05843 Suf: Suppressor of fo 97.5 0.0063 1.4E-07 59.9 16.8 133 357-492 2-140 (280)
159 PF04840 Vps16_C: Vps16, C-ter 97.5 0.15 3.2E-06 50.9 29.6 121 329-469 181-301 (319)
160 PRK10153 DNA-binding transcrip 97.5 0.006 1.3E-07 65.1 17.4 37 353-391 334-375 (517)
161 PLN03088 SGT1, suppressor of 97.4 0.00096 2.1E-08 68.1 10.9 105 398-504 9-115 (356)
162 PRK02603 photosystem I assembl 97.4 0.002 4.4E-08 58.4 11.9 82 427-508 35-121 (172)
163 PF13432 TPR_16: Tetratricopep 97.4 0.00046 1E-08 50.9 6.3 58 465-522 3-60 (65)
164 CHL00033 ycf3 photosystem I as 97.4 0.0019 4.2E-08 58.3 11.4 94 426-519 34-139 (168)
165 PLN03088 SGT1, suppressor of 97.4 0.0031 6.7E-08 64.4 14.0 103 362-468 8-112 (356)
166 cd00189 TPR Tetratricopeptide 97.4 0.0024 5.2E-08 50.6 10.7 62 429-490 36-99 (100)
167 COG4700 Uncharacterized protei 97.3 0.034 7.3E-07 48.9 17.3 131 387-521 85-221 (251)
168 PRK15331 chaperone protein Sic 97.3 0.0061 1.3E-07 53.0 12.9 91 431-521 41-133 (165)
169 PF04840 Vps16_C: Vps16, C-ter 97.3 0.23 4.9E-06 49.6 27.4 101 229-347 184-284 (319)
170 KOG0553 TPR repeat-containing 97.3 0.00086 1.9E-08 63.5 7.8 111 374-499 76-189 (304)
171 PRK02603 photosystem I assembl 97.3 0.01 2.2E-07 53.7 14.7 131 355-508 34-166 (172)
172 KOG0553 TPR repeat-containing 97.2 0.0029 6.4E-08 60.0 10.1 96 364-464 89-187 (304)
173 PF14938 SNAP: Soluble NSF att 97.1 0.12 2.7E-06 50.9 21.8 87 405-491 129-228 (282)
174 PF14559 TPR_19: Tetratricopep 97.1 0.0006 1.3E-08 50.8 4.1 53 470-522 2-54 (68)
175 PF14938 SNAP: Soluble NSF att 97.1 0.06 1.3E-06 53.2 19.4 102 358-460 157-269 (282)
176 KOG1538 Uncharacterized conser 97.1 0.11 2.3E-06 54.5 20.9 209 211-486 624-844 (1081)
177 CHL00033 ycf3 photosystem I as 97.1 0.031 6.7E-07 50.4 15.8 81 356-438 35-117 (168)
178 PF13371 TPR_9: Tetratricopept 97.1 0.0018 3.9E-08 49.0 6.5 57 467-523 3-59 (73)
179 PF13432 TPR_16: Tetratricopep 97.1 0.0019 4E-08 47.6 6.3 61 433-493 3-65 (65)
180 PF12895 Apc3: Anaphase-promot 97.1 0.0021 4.5E-08 50.3 6.9 80 369-452 2-83 (84)
181 COG4235 Cytochrome c biogenesi 97.0 0.019 4E-07 55.0 14.0 101 424-524 153-258 (287)
182 PF13431 TPR_17: Tetratricopep 97.0 0.00048 1E-08 42.9 2.2 33 482-514 2-34 (34)
183 PF05843 Suf: Suppressor of fo 97.0 0.025 5.5E-07 55.7 15.4 127 254-384 2-135 (280)
184 PF10037 MRP-S27: Mitochondria 97.0 0.008 1.7E-07 61.6 11.5 121 74-196 60-186 (429)
185 PF08579 RPM2: Mitochondrial r 96.9 0.011 2.3E-07 47.5 9.7 81 358-439 27-116 (120)
186 COG3898 Uncharacterized membra 96.9 0.51 1.1E-05 46.8 25.6 239 265-520 132-390 (531)
187 PF06239 ECSIT: Evolutionarily 96.9 0.0095 2.1E-07 54.1 10.3 97 345-442 34-153 (228)
188 PF08579 RPM2: Mitochondrial r 96.9 0.021 4.6E-07 45.9 10.9 81 255-337 27-116 (120)
189 PF06239 ECSIT: Evolutionarily 96.9 0.027 5.7E-07 51.3 12.9 117 286-417 43-165 (228)
190 KOG2041 WD40 repeat protein [G 96.9 0.59 1.3E-05 49.7 23.9 154 22-211 743-902 (1189)
191 KOG0550 Molecular chaperone (D 96.9 0.034 7.3E-07 55.1 14.3 263 230-522 57-350 (486)
192 PF10037 MRP-S27: Mitochondria 96.8 0.014 3E-07 59.9 12.2 74 330-403 108-185 (429)
193 PRK10153 DNA-binding transcrip 96.8 0.055 1.2E-06 57.9 17.2 136 385-524 331-484 (517)
194 PF14559 TPR_19: Tetratricopep 96.8 0.0021 4.5E-08 47.8 4.6 60 403-464 3-63 (68)
195 PF12688 TPR_5: Tetratrico pep 96.8 0.049 1.1E-06 45.4 13.1 92 362-453 7-101 (120)
196 KOG2053 Mitochondrial inherita 96.8 1.2 2.6E-05 49.0 40.6 210 27-249 24-253 (932)
197 KOG2280 Vacuolar assembly/sort 96.8 1.1 2.3E-05 48.4 26.9 317 178-518 427-795 (829)
198 KOG1130 Predicted G-alpha GTPa 96.7 0.015 3.2E-07 57.4 10.6 129 392-520 196-342 (639)
199 KOG1538 Uncharacterized conser 96.7 0.15 3.3E-06 53.4 18.0 230 52-353 559-801 (1081)
200 COG4700 Uncharacterized protei 96.7 0.24 5.3E-06 43.7 16.6 64 288-351 87-150 (251)
201 PF13414 TPR_11: TPR repeat; P 96.7 0.0057 1.2E-07 45.6 6.1 65 426-490 2-69 (69)
202 PRK15363 pathogenicity island 96.6 0.063 1.4E-06 46.6 13.0 93 328-421 38-133 (157)
203 PF13281 DUF4071: Domain of un 96.6 0.26 5.6E-06 49.7 18.7 160 330-492 146-338 (374)
204 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.011 2.4E-07 60.1 9.0 63 426-488 74-141 (453)
205 PRK10866 outer membrane biogen 96.5 0.24 5.1E-06 47.5 17.8 174 330-520 37-239 (243)
206 PF12688 TPR_5: Tetratrico pep 96.5 0.041 8.9E-07 45.9 10.9 85 434-518 8-100 (120)
207 PRK10803 tol-pal system protei 96.5 0.028 6.1E-07 54.3 11.0 92 430-521 146-245 (263)
208 PF13371 TPR_9: Tetratricopept 96.4 0.012 2.6E-07 44.4 6.6 63 435-497 3-67 (73)
209 PF13428 TPR_14: Tetratricopep 96.4 0.0063 1.4E-07 40.6 4.3 42 460-501 2-43 (44)
210 PRK10866 outer membrane biogen 96.4 0.88 1.9E-05 43.7 20.7 65 252-320 31-99 (243)
211 KOG2280 Vacuolar assembly/sort 96.2 2.3 5E-05 46.0 30.1 330 86-452 443-795 (829)
212 KOG2796 Uncharacterized conser 96.2 0.37 8E-06 45.1 15.6 164 328-491 139-318 (366)
213 PRK10803 tol-pal system protei 96.1 0.09 1.9E-06 50.9 12.4 98 393-493 145-251 (263)
214 KOG2796 Uncharacterized conser 96.1 0.34 7.4E-06 45.3 14.8 225 146-393 69-321 (366)
215 PF12921 ATP13: Mitochondrial 96.0 0.099 2.1E-06 44.1 10.3 50 387-436 48-97 (126)
216 PF13525 YfiO: Outer membrane 96.0 1.4 3E-05 41.0 20.9 61 259-319 11-71 (203)
217 COG3898 Uncharacterized membra 95.9 2.2 4.7E-05 42.5 26.7 287 149-453 85-389 (531)
218 PF09205 DUF1955: Domain of un 95.8 0.95 2.1E-05 37.7 14.8 139 368-525 14-152 (161)
219 PF13424 TPR_12: Tetratricopep 95.7 0.019 4.1E-07 43.9 4.8 61 460-520 6-73 (78)
220 PF03704 BTAD: Bacterial trans 95.6 0.059 1.3E-06 47.2 8.1 61 461-521 64-124 (146)
221 PF12921 ATP13: Mitochondrial 95.6 0.13 2.8E-06 43.4 9.5 49 422-470 47-99 (126)
222 KOG0543 FKBP-type peptidyl-pro 95.5 0.14 2.9E-06 51.2 10.7 63 459-521 257-319 (397)
223 KOG1130 Predicted G-alpha GTPa 95.5 0.28 6.1E-06 48.8 12.5 128 291-418 196-342 (639)
224 PF13424 TPR_12: Tetratricopep 95.4 0.03 6.6E-07 42.8 5.0 60 428-487 6-74 (78)
225 KOG0550 Molecular chaperone (D 95.3 3.7 8E-05 41.3 20.6 85 366-453 259-347 (486)
226 PF13525 YfiO: Outer membrane 95.3 1.1 2.4E-05 41.7 15.8 161 335-514 15-199 (203)
227 KOG3941 Intermediate in Toll s 95.0 0.21 4.5E-06 47.2 9.7 102 341-443 50-174 (406)
228 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.15 3.3E-06 52.0 9.7 61 390-453 74-138 (453)
229 COG4235 Cytochrome c biogenesi 95.0 0.42 9.1E-06 46.0 11.9 30 355-384 155-184 (287)
230 KOG1258 mRNA processing protei 94.9 6.2 0.00013 41.8 30.5 418 41-509 39-491 (577)
231 COG1729 Uncharacterized protei 94.8 0.24 5.2E-06 47.0 9.7 82 439-522 153-244 (262)
232 KOG0543 FKBP-type peptidyl-pro 94.7 0.61 1.3E-05 46.7 12.7 138 363-522 215-355 (397)
233 COG0457 NrfG FOG: TPR repeat [ 94.7 3.7 8.1E-05 38.2 27.8 195 325-521 59-264 (291)
234 KOG4555 TPR repeat-containing 94.7 0.4 8.7E-06 39.7 9.3 90 435-524 51-146 (175)
235 PF13512 TPR_18: Tetratricopep 94.6 1 2.2E-05 38.5 12.2 59 436-494 19-82 (142)
236 KOG2066 Vacuolar assembly/sort 94.5 9.2 0.0002 41.9 25.3 75 88-164 364-441 (846)
237 PF03704 BTAD: Bacterial trans 94.4 0.47 1E-05 41.4 10.4 68 361-429 67-138 (146)
238 COG3118 Thioredoxin domain-con 94.3 2.6 5.7E-05 40.6 15.2 122 400-524 143-267 (304)
239 COG5107 RNA14 Pre-mRNA 3'-end 94.2 7.5 0.00016 39.7 31.1 133 357-492 398-535 (660)
240 PF10300 DUF3808: Protein of u 93.7 4.4 9.5E-05 43.2 17.8 159 360-521 192-375 (468)
241 PF13281 DUF4071: Domain of un 93.6 9.5 0.00021 38.7 18.7 72 227-300 146-227 (374)
242 PRK11906 transcriptional regul 93.5 1.6 3.4E-05 45.0 13.3 62 458-519 337-398 (458)
243 PF00515 TPR_1: Tetratricopept 93.5 0.15 3.3E-06 31.4 4.0 32 460-491 2-33 (34)
244 PF04053 Coatomer_WDAD: Coatom 93.4 2.4 5.2E-05 44.5 14.9 132 293-454 298-429 (443)
245 KOG1941 Acetylcholine receptor 93.2 2.3 5E-05 41.9 13.1 121 397-517 128-270 (518)
246 PRK11906 transcriptional regul 93.2 8.2 0.00018 40.0 17.7 159 357-518 252-432 (458)
247 PF07719 TPR_2: Tetratricopept 93.0 0.27 5.8E-06 30.2 4.6 33 460-492 2-34 (34)
248 KOG1585 Protein required for f 92.9 8.1 0.00018 36.2 17.3 198 293-517 34-251 (308)
249 smart00299 CLH Clathrin heavy 92.8 5.7 0.00012 34.2 14.5 40 330-369 12-54 (140)
250 PF13512 TPR_18: Tetratricopep 92.8 4.4 9.4E-05 34.7 12.8 18 475-492 115-132 (142)
251 KOG2610 Uncharacterized conser 92.4 1.5 3.2E-05 42.7 10.6 159 368-529 115-283 (491)
252 PF04053 Coatomer_WDAD: Coatom 92.4 3.4 7.3E-05 43.4 14.3 158 56-248 268-428 (443)
253 KOG1920 IkappaB kinase complex 92.3 26 0.00056 40.5 22.2 54 398-453 972-1025(1265)
254 smart00299 CLH Clathrin heavy 92.2 6.9 0.00015 33.7 15.0 44 295-339 12-55 (140)
255 KOG1585 Protein required for f 92.1 11 0.00023 35.4 15.5 63 203-279 74-136 (308)
256 KOG2610 Uncharacterized conser 92.0 4.1 9E-05 39.8 12.9 156 336-495 114-285 (491)
257 COG4785 NlpI Lipoprotein NlpI, 92.0 9.5 0.00021 35.0 14.4 178 339-524 79-268 (297)
258 COG0457 NrfG FOG: TPR repeat [ 92.0 10 0.00022 35.1 26.4 194 294-491 63-268 (291)
259 PF10300 DUF3808: Protein of u 91.8 20 0.00044 38.2 22.9 163 149-317 191-374 (468)
260 COG1729 Uncharacterized protei 91.6 2.5 5.3E-05 40.3 11.0 61 432-492 183-248 (262)
261 KOG4555 TPR repeat-containing 91.5 1.9 4.1E-05 35.9 8.7 90 400-491 52-147 (175)
262 PF08631 SPO22: Meiosis protei 91.5 15 0.00033 36.1 23.2 18 468-485 255-272 (278)
263 PF13170 DUF4003: Protein of u 91.4 4.6 0.0001 39.9 13.3 93 341-436 119-226 (297)
264 KOG1941 Acetylcholine receptor 91.2 17 0.00037 36.1 16.3 127 361-487 127-274 (518)
265 KOG2114 Vacuolar assembly/sort 91.0 29 0.00064 38.5 25.6 176 51-251 336-519 (933)
266 PF04184 ST7: ST7 protein; In 90.9 23 0.0005 37.0 18.2 96 397-492 265-379 (539)
267 KOG3941 Intermediate in Toll s 90.8 2 4.3E-05 40.8 9.3 99 240-340 52-173 (406)
268 PF02259 FAT: FAT domain; Int 90.7 21 0.00045 36.3 20.6 148 354-504 144-303 (352)
269 PRK15331 chaperone protein Sic 90.5 3.6 7.8E-05 36.1 10.2 85 262-351 46-131 (165)
270 PRK11619 lytic murein transgly 90.0 36 0.00078 37.9 31.6 79 223-305 100-178 (644)
271 PF13176 TPR_7: Tetratricopept 89.9 0.53 1.2E-05 29.5 3.5 26 495-520 1-26 (36)
272 PRK09687 putative lyase; Provi 89.9 21 0.00046 35.0 27.1 81 219-303 34-118 (280)
273 KOG2114 Vacuolar assembly/sort 89.8 13 0.00029 41.1 15.5 177 293-484 337-515 (933)
274 COG3118 Thioredoxin domain-con 89.3 22 0.00048 34.5 16.6 153 364-519 142-299 (304)
275 COG3629 DnrI DNA-binding trans 89.1 2.6 5.7E-05 40.8 9.1 76 325-400 153-236 (280)
276 COG4105 ComL DNA uptake lipopr 88.9 22 0.00047 33.8 20.8 58 465-522 173-233 (254)
277 COG4649 Uncharacterized protei 88.9 4.7 0.0001 35.5 9.4 45 235-279 71-120 (221)
278 PF04184 ST7: ST7 protein; In 88.8 9.2 0.0002 39.8 13.0 59 463-521 263-323 (539)
279 PF10602 RPN7: 26S proteasome 88.8 9.7 0.00021 34.4 12.2 93 359-453 39-139 (177)
280 KOG4234 TPR repeat-containing 88.5 1.9 4E-05 38.9 6.9 89 435-523 103-198 (271)
281 PRK09687 putative lyase; Provi 88.4 27 0.00058 34.3 26.7 76 322-402 203-278 (280)
282 PF13181 TPR_8: Tetratricopept 88.4 0.84 1.8E-05 27.9 3.6 31 461-491 3-33 (34)
283 COG5107 RNA14 Pre-mRNA 3'-end 88.3 33 0.00072 35.3 30.3 413 101-521 30-530 (660)
284 PF04097 Nic96: Nup93/Nic96; 88.0 48 0.001 36.9 19.3 21 437-457 515-535 (613)
285 TIGR02561 HrpB1_HrpK type III 87.5 2.4 5.3E-05 36.3 6.8 55 470-524 21-75 (153)
286 PF13176 TPR_7: Tetratricopept 87.3 1 2.3E-05 28.1 3.6 28 461-488 1-28 (36)
287 PF09613 HrpB1_HrpK: Bacterial 87.3 2.8 6E-05 36.7 7.2 54 470-523 21-74 (160)
288 PF13428 TPR_14: Tetratricopep 86.9 2.1 4.5E-05 28.2 5.1 27 358-384 3-29 (44)
289 PF09205 DUF1955: Domain of un 86.8 18 0.00039 30.5 12.5 59 360-419 90-148 (161)
290 PF00515 TPR_1: Tetratricopept 86.5 1.5 3.3E-05 26.7 4.0 28 357-384 2-29 (34)
291 PF13170 DUF4003: Protein of u 86.2 22 0.00047 35.2 13.8 129 200-332 75-224 (297)
292 PF07035 Mic1: Colon cancer-as 86.0 24 0.00053 31.3 13.7 134 166-319 14-149 (167)
293 PF09613 HrpB1_HrpK: Bacterial 86.0 23 0.0005 31.1 13.5 90 399-491 18-109 (160)
294 COG3629 DnrI DNA-binding trans 85.3 4.3 9.4E-05 39.3 8.2 61 461-521 155-215 (280)
295 PF02259 FAT: FAT domain; Int 85.1 41 0.0009 34.1 16.3 68 457-524 144-215 (352)
296 COG1747 Uncharacterized N-term 84.5 57 0.0012 34.3 19.9 159 252-419 65-233 (711)
297 KOG1464 COP9 signalosome, subu 84.4 39 0.00084 32.2 17.1 236 236-477 41-321 (440)
298 PF10602 RPN7: 26S proteasome 83.6 15 0.00033 33.1 10.7 56 224-279 38-99 (177)
299 COG3947 Response regulator con 83.4 46 0.00099 32.3 15.9 57 465-521 285-341 (361)
300 KOG4648 Uncharacterized conser 82.8 2.7 5.8E-05 41.1 5.6 113 398-517 104-219 (536)
301 PF07721 TPR_4: Tetratricopept 82.5 1.9 4.1E-05 24.6 2.8 24 494-517 2-25 (26)
302 TIGR02508 type_III_yscG type I 82.2 23 0.00051 28.1 9.4 86 203-294 21-106 (115)
303 TIGR02508 type_III_yscG type I 82.1 23 0.00051 28.1 9.3 61 333-396 47-107 (115)
304 PF07719 TPR_2: Tetratricopept 81.5 3.3 7.2E-05 25.0 4.0 27 358-384 3-29 (34)
305 PF00637 Clathrin: Region in C 81.5 1 2.3E-05 39.0 2.3 84 86-172 13-96 (143)
306 PF02284 COX5A: Cytochrome c o 81.4 12 0.00026 29.8 7.7 60 374-435 28-87 (108)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 81.3 13 0.00027 29.4 7.6 62 372-435 23-84 (103)
308 PF13431 TPR_17: Tetratricopep 80.5 3 6.6E-05 25.7 3.5 24 219-242 10-33 (34)
309 PF13374 TPR_10: Tetratricopep 79.6 3.7 8E-05 26.3 4.0 28 494-521 3-30 (42)
310 KOG1586 Protein required for f 79.2 56 0.0012 30.6 15.8 61 434-494 161-230 (288)
311 KOG4570 Uncharacterized conser 77.3 20 0.00044 34.9 9.3 97 110-216 59-164 (418)
312 KOG2066 Vacuolar assembly/sort 76.6 1.3E+02 0.0029 33.5 30.5 170 55-254 362-537 (846)
313 PRK12798 chemotaxis protein; R 76.5 97 0.0021 31.9 22.2 181 338-521 125-323 (421)
314 PF13374 TPR_10: Tetratricopep 76.5 6 0.00013 25.2 4.3 28 357-384 3-30 (42)
315 PF02284 COX5A: Cytochrome c o 76.4 17 0.00036 29.0 7.1 49 452-500 38-86 (108)
316 PF13181 TPR_8: Tetratricopept 76.3 5.8 0.00013 24.0 3.9 28 494-521 2-29 (34)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 75.8 17 0.00037 28.7 6.9 48 452-499 35-82 (103)
318 PF00637 Clathrin: Region in C 75.6 1.2 2.7E-05 38.6 0.9 82 297-381 14-95 (143)
319 KOG4648 Uncharacterized conser 75.5 15 0.00034 36.1 8.2 95 362-460 103-199 (536)
320 PF11207 DUF2989: Protein of u 75.1 18 0.0004 33.0 8.1 74 439-513 119-198 (203)
321 smart00028 TPR Tetratricopepti 74.8 6.2 0.00013 22.7 3.9 28 463-490 5-32 (34)
322 PF13174 TPR_6: Tetratricopept 74.8 5.6 0.00012 23.7 3.6 25 467-491 8-32 (33)
323 KOG4570 Uncharacterized conser 74.5 34 0.00074 33.5 10.0 97 320-420 59-164 (418)
324 PF14853 Fis1_TPR_C: Fis1 C-te 74.5 22 0.00048 24.6 6.6 26 496-521 4-29 (53)
325 PRK10941 hypothetical protein; 73.6 18 0.00039 35.2 8.3 60 462-521 184-243 (269)
326 PRK15180 Vi polysaccharide bio 73.5 55 0.0012 34.0 11.7 50 402-453 334-383 (831)
327 KOG2300 Uncharacterized conser 73.2 1.3E+02 0.0027 31.7 26.2 146 238-384 298-473 (629)
328 PF14669 Asp_Glu_race_2: Putat 72.6 75 0.0016 28.8 14.4 56 295-350 137-206 (233)
329 KOG0991 Replication factor C, 72.0 72 0.0016 29.9 11.1 148 228-402 136-283 (333)
330 PF13174 TPR_6: Tetratricopept 71.9 5.7 0.00012 23.7 3.1 28 495-522 2-29 (33)
331 KOG1920 IkappaB kinase complex 71.8 2.1E+02 0.0046 33.7 23.7 102 336-454 950-1053(1265)
332 KOG1586 Protein required for f 71.4 92 0.002 29.3 13.9 23 470-492 165-187 (288)
333 PF11207 DUF2989: Protein of u 70.9 41 0.00089 30.8 9.3 73 270-345 123-198 (203)
334 KOG0276 Vesicle coat complex C 70.8 54 0.0012 35.2 11.2 103 334-454 646-748 (794)
335 PF06552 TOM20_plant: Plant sp 70.8 49 0.0011 29.7 9.5 44 475-525 96-139 (186)
336 PF14853 Fis1_TPR_C: Fis1 C-te 70.7 11 0.00024 26.1 4.4 30 465-494 7-36 (53)
337 PF07721 TPR_4: Tetratricopept 70.6 8.2 0.00018 21.9 3.3 21 329-349 5-25 (26)
338 COG2909 MalT ATP-dependent tra 68.3 2.2E+02 0.0048 32.4 22.1 264 261-532 355-657 (894)
339 PF06552 TOM20_plant: Plant sp 68.0 29 0.00062 31.1 7.5 46 475-520 51-100 (186)
340 COG4105 ComL DNA uptake lipopr 67.7 1.2E+02 0.0025 29.1 23.3 60 433-492 173-237 (254)
341 TIGR02561 HrpB1_HrpK type III 67.2 85 0.0018 27.3 11.1 20 232-251 54-73 (153)
342 COG4455 ImpE Protein of avirul 67.2 24 0.00051 32.6 6.9 63 430-492 4-68 (273)
343 PF10345 Cohesin_load: Cohesin 67.0 2.1E+02 0.0046 31.8 28.6 49 472-520 547-604 (608)
344 PF13929 mRNA_stabil: mRNA sta 66.6 67 0.0015 31.3 10.3 105 372-476 144-255 (292)
345 COG2976 Uncharacterized protei 66.2 1.1E+02 0.0023 28.0 14.1 89 398-491 96-191 (207)
346 KOG2297 Predicted translation 65.4 1.4E+02 0.0031 29.2 12.6 19 387-405 219-237 (412)
347 PF04910 Tcf25: Transcriptiona 65.1 1.7E+02 0.0037 30.0 14.5 64 458-521 99-167 (360)
348 PF07035 Mic1: Colon cancer-as 64.9 1E+02 0.0022 27.4 15.5 25 429-453 91-115 (167)
349 COG4455 ImpE Protein of avirul 64.6 33 0.00072 31.7 7.3 59 358-418 3-62 (273)
350 KOG3807 Predicted membrane pro 64.4 58 0.0012 32.1 9.3 17 477-493 380-396 (556)
351 PRK13800 putative oxidoreducta 64.3 2.9E+02 0.0064 32.5 27.6 269 134-436 623-893 (897)
352 KOG4507 Uncharacterized conser 64.3 22 0.00047 37.8 7.0 102 402-504 618-721 (886)
353 PF09477 Type_III_YscG: Bacter 64.0 77 0.0017 25.7 10.2 85 203-293 22-106 (116)
354 PF09986 DUF2225: Uncharacteri 63.0 45 0.00098 31.2 8.4 63 461-523 120-195 (214)
355 PF14561 TPR_20: Tetratricopep 62.5 19 0.00041 28.3 4.9 45 479-523 8-52 (90)
356 PRK15180 Vi polysaccharide bio 61.5 59 0.0013 33.8 9.2 130 335-469 299-435 (831)
357 PRK13800 putative oxidoreducta 61.5 3.3E+02 0.0071 32.1 26.1 255 242-520 624-879 (897)
358 PF10366 Vps39_1: Vacuolar sor 60.9 71 0.0015 26.1 8.2 27 358-384 41-67 (108)
359 KOG4279 Serine/threonine prote 60.8 2.3E+02 0.005 31.5 13.7 179 311-492 184-399 (1226)
360 PF13934 ELYS: Nuclear pore co 60.3 1.5E+02 0.0034 27.9 12.3 105 359-472 79-185 (226)
361 PF09477 Type_III_YscG: Bacter 60.1 92 0.002 25.3 9.3 87 304-394 20-106 (116)
362 KOG3364 Membrane protein invol 59.5 55 0.0012 27.8 7.2 48 474-521 50-99 (149)
363 KOG0276 Vesicle coat complex C 59.2 95 0.0021 33.4 10.5 102 231-351 646-747 (794)
364 PHA02875 ankyrin repeat protei 58.9 1.5E+02 0.0032 31.0 12.7 191 209-411 17-219 (413)
365 KOG4642 Chaperone-dependent E3 58.7 34 0.00073 32.2 6.4 78 442-519 25-104 (284)
366 PF11768 DUF3312: Protein of u 57.6 1.3E+02 0.0028 32.2 11.2 56 329-384 412-472 (545)
367 TIGR03504 FimV_Cterm FimV C-te 57.2 20 0.00042 23.7 3.5 26 498-523 4-29 (44)
368 PF13762 MNE1: Mitochondrial s 57.2 94 0.002 26.9 8.5 80 117-198 41-130 (145)
369 KOG4234 TPR repeat-containing 56.8 1.4E+02 0.0029 27.5 9.6 90 401-492 105-201 (271)
370 PF10345 Cohesin_load: Cohesin 56.7 3.2E+02 0.0069 30.4 30.3 79 94-172 153-251 (608)
371 PHA02875 ankyrin repeat protei 56.5 2.5E+02 0.0055 29.2 17.8 198 55-271 5-217 (413)
372 KOG1550 Extracellular protein 56.4 3.1E+02 0.0066 30.1 16.8 51 473-525 378-429 (552)
373 PF08631 SPO22: Meiosis protei 56.2 2.1E+02 0.0045 28.1 25.9 20 500-519 253-272 (278)
374 PRK10941 hypothetical protein; 56.1 83 0.0018 30.6 9.1 67 430-496 184-252 (269)
375 PF09670 Cas_Cas02710: CRISPR- 55.8 2.1E+02 0.0045 29.6 12.6 53 366-419 141-197 (379)
376 KOG0376 Serine-threonine phosp 55.3 10 0.00022 39.3 2.8 94 398-494 11-107 (476)
377 COG2976 Uncharacterized protei 55.3 1.7E+02 0.0037 26.8 14.8 88 299-386 98-189 (207)
378 smart00386 HAT HAT (Half-A-TPR 55.3 23 0.00049 20.7 3.6 29 473-501 1-29 (33)
379 KOG1308 Hsp70-interacting prot 55.2 9.1 0.0002 37.7 2.4 84 441-524 128-213 (377)
380 PF11846 DUF3366: Domain of un 54.9 48 0.001 30.4 7.2 34 457-490 142-175 (193)
381 KOG1258 mRNA processing protei 54.9 3.1E+02 0.0067 29.7 32.3 127 27-156 60-192 (577)
382 cd08819 CARD_MDA5_2 Caspase ac 54.6 72 0.0016 24.7 6.6 66 99-166 21-86 (88)
383 PF04097 Nic96: Nup93/Nic96; 54.3 3.5E+02 0.0076 30.2 19.5 69 48-116 110-188 (613)
384 COG4649 Uncharacterized protei 53.5 1.7E+02 0.0037 26.3 14.1 53 368-420 144-196 (221)
385 PF10366 Vps39_1: Vacuolar sor 53.3 1.2E+02 0.0026 24.8 8.3 25 255-279 41-65 (108)
386 KOG0545 Aryl-hydrocarbon recep 53.0 93 0.002 29.5 8.3 88 434-521 185-292 (329)
387 KOG2422 Uncharacterized conser 52.3 3.4E+02 0.0073 29.4 13.1 54 467-520 350-405 (665)
388 KOG2471 TPR repeat-containing 51.8 3.2E+02 0.0069 28.9 15.3 298 93-438 30-380 (696)
389 PF10579 Rapsyn_N: Rapsyn N-te 51.0 44 0.00095 25.3 4.8 19 430-448 46-64 (80)
390 PF07163 Pex26: Pex26 protein; 50.8 1.9E+02 0.004 28.2 10.1 87 260-348 90-181 (309)
391 PF10579 Rapsyn_N: Rapsyn N-te 48.2 46 0.001 25.2 4.6 45 471-515 18-65 (80)
392 COG1747 Uncharacterized N-term 47.8 3.8E+02 0.0081 28.6 23.3 48 289-338 65-112 (711)
393 PF11846 DUF3366: Domain of un 46.7 87 0.0019 28.6 7.5 52 402-453 119-170 (193)
394 TIGR03504 FimV_Cterm FimV C-te 46.7 44 0.00094 22.1 3.9 22 363-384 6-27 (44)
395 KOG4077 Cytochrome c oxidase, 46.6 1.2E+02 0.0026 25.4 7.1 70 374-454 67-136 (149)
396 PF14863 Alkyl_sulf_dimr: Alky 46.4 89 0.0019 27.0 6.8 63 443-508 57-119 (141)
397 COG5159 RPN6 26S proteasome re 45.5 2.5E+02 0.0055 27.3 10.0 124 154-279 11-151 (421)
398 PF13929 mRNA_stabil: mRNA sta 44.7 3.1E+02 0.0068 26.8 19.0 57 321-377 198-259 (292)
399 KOG1498 26S proteasome regulat 43.9 3.7E+02 0.0081 27.5 17.7 192 322-542 49-261 (439)
400 KOG0292 Vesicle coat complex C 42.8 34 0.00074 38.2 4.6 78 396-489 625-702 (1202)
401 PF13934 ELYS: Nuclear pore co 42.6 3E+02 0.0065 26.0 12.5 113 338-460 91-205 (226)
402 PF08311 Mad3_BUB1_I: Mad3/BUB 42.6 1.7E+02 0.0038 24.6 8.0 42 477-518 81-124 (126)
403 PF11663 Toxin_YhaV: Toxin wit 42.5 27 0.00059 29.5 3.0 32 368-401 107-138 (140)
404 KOG3824 Huntingtin interacting 41.5 80 0.0017 30.8 6.2 47 470-516 127-173 (472)
405 KOG0686 COP9 signalosome, subu 41.3 4.2E+02 0.0091 27.3 13.7 60 325-384 150-215 (466)
406 KOG4077 Cytochrome c oxidase, 41.2 1.3E+02 0.0029 25.2 6.6 39 452-490 77-115 (149)
407 PF11848 DUF3368: Domain of un 41.0 1E+02 0.0022 20.8 5.1 33 367-399 13-45 (48)
408 PF12862 Apc5: Anaphase-promot 40.5 94 0.002 24.4 5.8 52 470-521 9-69 (94)
409 PF07163 Pex26: Pex26 protein; 40.5 1.8E+02 0.0038 28.3 8.2 84 53-138 87-181 (309)
410 KOG2297 Predicted translation 40.0 3.8E+02 0.0082 26.5 12.9 165 8-198 155-336 (412)
411 PF11768 DUF3312: Protein of u 39.9 2.1E+02 0.0045 30.8 9.5 54 226-279 412-470 (545)
412 PRK10564 maltose regulon perip 38.5 59 0.0013 31.8 5.0 45 354-398 254-299 (303)
413 PF14689 SPOB_a: Sensor_kinase 37.9 82 0.0018 22.6 4.6 22 431-452 27-48 (62)
414 KOG0890 Protein kinase of the 37.4 1.1E+03 0.023 30.9 32.1 279 225-524 1423-1733(2382)
415 PF14689 SPOB_a: Sensor_kinase 35.8 78 0.0017 22.7 4.2 30 390-419 22-51 (62)
416 PF13762 MNE1: Mitochondrial s 35.7 2.9E+02 0.0064 23.9 11.3 49 355-403 78-127 (145)
417 KOG1550 Extracellular protein 35.6 6.3E+02 0.014 27.7 22.8 45 474-521 490-537 (552)
418 PF10255 Paf67: RNA polymerase 35.6 1.2E+02 0.0026 31.5 6.9 113 42-173 68-191 (404)
419 COG2178 Predicted RNA-binding 35.6 3.3E+02 0.0072 24.9 8.7 51 335-385 39-98 (204)
420 PF08311 Mad3_BUB1_I: Mad3/BUB 35.3 2.7E+02 0.0058 23.4 8.1 59 80-140 65-124 (126)
421 cd08819 CARD_MDA5_2 Caspase ac 35.2 2.2E+02 0.0047 22.2 6.9 38 337-375 48-85 (88)
422 COG4785 NlpI Lipoprotein NlpI, 34.9 3.9E+02 0.0084 25.1 17.6 30 291-320 238-267 (297)
423 COG4976 Predicted methyltransf 34.9 64 0.0014 30.2 4.3 57 436-492 4-62 (287)
424 PRK11619 lytic murein transgly 34.7 7E+02 0.015 28.0 40.7 79 115-197 99-177 (644)
425 KOG0292 Vesicle coat complex C 34.5 4E+02 0.0087 30.5 10.8 176 266-487 606-781 (1202)
426 COG3947 Response regulator con 33.9 4.7E+02 0.01 25.7 14.0 56 430-485 282-339 (361)
427 PF07720 TPR_3: Tetratricopept 33.7 1.2E+02 0.0027 18.9 4.6 18 464-481 6-23 (36)
428 PF04034 DUF367: Domain of unk 33.0 2.9E+02 0.0063 23.2 7.5 58 427-484 66-124 (127)
429 TIGR01503 MthylAspMut_E methyl 33.0 2.6E+02 0.0057 29.3 8.8 105 305-416 69-194 (480)
430 cd08326 CARD_CASP9 Caspase act 32.9 1.7E+02 0.0037 22.6 5.9 62 207-272 19-80 (84)
431 PF11848 DUF3368: Domain of un 32.5 1.2E+02 0.0027 20.3 4.5 35 90-124 12-46 (48)
432 PF12968 DUF3856: Domain of Un 32.3 2.9E+02 0.0063 23.0 7.2 20 499-518 106-125 (144)
433 KOG2063 Vacuolar assembly/sort 31.9 8.7E+02 0.019 28.2 15.5 25 255-279 506-530 (877)
434 PF02847 MA3: MA3 domain; Int 31.5 1.5E+02 0.0033 24.0 6.0 22 258-279 7-28 (113)
435 PRK10564 maltose regulon perip 30.8 82 0.0018 30.9 4.6 39 255-295 259-297 (303)
436 KOG0551 Hsp90 co-chaperone CNS 30.6 2.3E+02 0.0051 28.3 7.6 90 430-519 84-179 (390)
437 COG5191 Uncharacterized conser 30.4 70 0.0015 31.3 4.0 76 423-498 103-181 (435)
438 cd08326 CARD_CASP9 Caspase act 30.1 1.7E+02 0.0036 22.6 5.4 63 99-165 18-80 (84)
439 PF11663 Toxin_YhaV: Toxin wit 29.4 69 0.0015 27.2 3.3 34 156-193 105-138 (140)
440 PF15469 Sec5: Exocyst complex 29.1 4.3E+02 0.0093 23.8 11.5 24 396-419 91-114 (182)
441 PF10255 Paf67: RNA polymerase 28.5 3E+02 0.0066 28.6 8.5 55 465-519 128-190 (404)
442 PF04090 RNA_pol_I_TF: RNA pol 28.4 4.8E+02 0.01 24.1 10.1 128 356-500 41-185 (199)
443 PF12926 MOZART2: Mitotic-spin 27.9 2.9E+02 0.0063 21.4 7.0 62 79-142 9-70 (88)
444 KOG2422 Uncharacterized conser 27.7 8.3E+02 0.018 26.6 14.1 120 21-141 242-404 (665)
445 PF12862 Apc5: Anaphase-promot 27.4 3E+02 0.0066 21.5 7.7 19 400-418 50-68 (94)
446 KOG1524 WD40 repeat-containing 27.3 3E+02 0.0066 29.2 8.1 89 426-517 572-668 (737)
447 PF11817 Foie-gras_1: Foie gra 27.2 2.2E+02 0.0048 27.3 7.1 16 154-169 18-33 (247)
448 PRK13342 recombination factor 27.1 7.4E+02 0.016 25.9 12.8 36 148-185 229-267 (413)
449 KOG2659 LisH motif-containing 26.6 5.5E+02 0.012 24.2 9.1 91 359-452 29-128 (228)
450 PF11525 CopK: Copper resistan 26.5 26 0.00056 25.4 0.4 20 638-657 8-27 (73)
451 TIGR02270 conserved hypothetic 26.1 7.8E+02 0.017 25.8 25.9 120 324-454 160-279 (410)
452 PF14561 TPR_20: Tetratricopep 26.1 3.2E+02 0.0069 21.3 8.4 62 458-519 21-85 (90)
453 cd00280 TRFH Telomeric Repeat 26.0 3.5E+02 0.0076 24.5 7.2 26 466-492 118-143 (200)
454 KOG3677 RNA polymerase I-assoc 25.4 4E+02 0.0087 27.5 8.3 61 291-351 236-298 (525)
455 PF11838 ERAP1_C: ERAP1-like C 24.9 6.9E+02 0.015 24.7 21.7 110 407-517 146-261 (324)
456 TIGR03581 EF_0839 conserved hy 24.6 1.8E+02 0.0039 27.0 5.3 61 292-352 165-235 (236)
457 COG4976 Predicted methyltransf 24.6 1.4E+02 0.003 28.1 4.7 54 470-523 6-59 (287)
458 PF10475 DUF2450: Protein of u 24.4 4.5E+02 0.0097 25.9 8.8 51 227-279 103-153 (291)
459 PF07064 RIC1: RIC1; InterPro 24.3 6.6E+02 0.014 24.3 14.6 38 52-89 85-124 (258)
460 COG2912 Uncharacterized conser 24.3 2.1E+02 0.0045 27.7 6.0 58 464-521 186-243 (269)
461 smart00544 MA3 Domain in DAP-5 24.3 3.9E+02 0.0083 21.6 9.0 22 258-279 7-28 (113)
462 COG5108 RPO41 Mitochondrial DN 24.2 4.7E+02 0.01 28.9 8.9 47 188-238 33-81 (1117)
463 cd08332 CARD_CASP2 Caspase act 23.9 2.6E+02 0.0057 21.9 5.6 59 207-269 23-81 (90)
464 KOG2063 Vacuolar assembly/sort 23.8 1.2E+03 0.026 27.2 17.2 113 118-235 507-639 (877)
465 cd00280 TRFH Telomeric Repeat 23.6 4.7E+02 0.01 23.8 7.5 34 433-466 117-150 (200)
466 cd08332 CARD_CASP2 Caspase act 23.5 2.8E+02 0.0061 21.7 5.7 61 99-163 22-82 (90)
467 PRK08691 DNA polymerase III su 23.4 1.1E+03 0.023 26.8 11.9 100 270-391 181-280 (709)
468 PF12926 MOZART2: Mitotic-spin 23.0 3.7E+02 0.008 20.9 7.4 42 311-352 29-70 (88)
469 PF08424 NRDE-2: NRDE-2, neces 22.9 7.8E+02 0.017 24.7 13.5 115 372-489 47-184 (321)
470 PF04190 DUF410: Protein of un 22.9 7E+02 0.015 24.1 18.3 191 233-452 1-216 (260)
471 PRK11639 zinc uptake transcrip 22.9 3.3E+02 0.0072 24.3 6.9 61 382-444 17-77 (169)
472 PF07575 Nucleopor_Nup85: Nup8 22.8 1E+03 0.023 26.1 19.0 59 289-349 404-462 (566)
473 COG0735 Fur Fe2+/Zn2+ uptake r 22.7 4.2E+02 0.0091 22.9 7.3 62 380-443 10-71 (145)
474 KOG4521 Nuclear pore complex, 21.7 1.4E+03 0.031 27.4 14.7 110 332-445 927-1072(1480)
475 KOG4507 Uncharacterized conser 21.7 4.1E+02 0.009 28.8 7.9 133 388-523 568-706 (886)
476 PRK13342 recombination factor 20.9 9.7E+02 0.021 25.0 15.3 48 358-405 229-279 (413)
477 KOG0403 Neoplastic transformat 20.5 1E+03 0.022 25.1 18.2 305 53-387 218-574 (645)
478 PF14669 Asp_Glu_race_2: Putat 20.4 6.7E+02 0.015 23.0 11.2 55 224-278 134-206 (233)
479 COG5108 RPO41 Mitochondrial DN 20.1 5E+02 0.011 28.7 8.2 47 361-407 33-81 (1117)
480 KOG0326 ATP-dependent RNA heli 20.1 30 0.00066 33.8 -0.4 17 645-661 362-381 (459)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.6e-125 Score=1075.17 Aligned_cols=642 Identities=36% Similarity=0.624 Sum_probs=628.8
Q ss_pred cccccchHHHhhccc----cchhhhccCC---CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh-
Q 006076 2 WALQSPQTPQLLRSP----YHTNSIAHLP---PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS- 73 (662)
Q Consensus 2 ~~~~~h~~~~~~g~~----~~~~li~~y~---~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~- 73 (662)
.|+++|+.+++.|+. +.|+||++|+ ++++|+++| ++|+++|+++ ||++|.+|+++|++++|+++|.
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf-~~m~~~d~~s-----~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF-DRMPRRDCIS-----WNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH-hcCCCCCcch-----hHHHHHHHHhCCCHHHHHHHHHH
Confidence 367899999999996 8999999999 999999999 9999998876 5669999999999999999998
Q ss_pred ---cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHH
Q 006076 74 ---IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN 150 (662)
Q Consensus 74 ---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 150 (662)
.+..||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+||.+|+++|++++|.++|++|+.+|+++||
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006076 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230 (662)
Q Consensus 151 ~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 230 (662)
++|.+|++.|++++|+++|++|.+. |+.||..||++++.+|++.++ ++.|.++|+.+.+.|+.|+..++|+||+
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~--g~~Pd~~t~~~ll~a~~~~g~----~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQD--NVSPDEITIASVLSACACLGD----LDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh--CCCCCceeHHHHHHHHhccch----HHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999 9999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHH
Q 006076 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310 (662)
Q Consensus 231 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (662)
+|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++| .. +++||..||+++|.+|++.|+++.++
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m--~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM--LL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH--Hh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 9999999999999999999999999999999999999999999999999 54 69999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006076 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390 (662)
Q Consensus 311 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 390 (662)
++|..+.+.|+.+|..++|+||++|+|+|++++|.++|+.+ .||+++||+||.+|+++|+.++|+++|++|.+.|+.||
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006076 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470 (662)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 470 (662)
..||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|.
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR 668 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999987899999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCc
Q 006076 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP 550 (662)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 550 (662)
.+|+.+.|+.+.+++++++|+++..|..|+++|++.|+|++|.++++.|+++|++|+||+|||++++++|.|++++.+||
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~ 748 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHP 748 (857)
T ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHHHHHhhhhHHHHHHHhhcCCCCCCcEEEEecccccCCCcchhh
Q 006076 551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTK 630 (662)
Q Consensus 551 ~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~i~~~~~l~~c~~~~~~~~ 630 (662)
+.++||+++.+|..+|++.||.||+.+++ ++++++|+..+++||||||++||||++++|+||||+||||+|+|||+++|
T Consensus 749 ~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k 827 (857)
T PLN03077 749 QIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVK 827 (857)
T ss_pred chHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHH
Confidence 99999999999999999999999999888 55788999999999999999999999999999999999999999999999
Q ss_pred hhhccccceEEEecCCccccccCcccCCCC
Q 006076 631 FISKFANKEILVRDVNRFHHFRNGVCSCGD 660 (662)
Q Consensus 631 ~~s~~~~~~~~~~d~~~~h~f~~g~csc~~ 660 (662)
+||++.+|+|||||.+|||||+||+|||+|
T Consensus 828 ~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 828 FISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.3e-123 Score=1032.91 Aligned_cols=605 Identities=36% Similarity=0.641 Sum_probs=596.6
Q ss_pred CChHHHHHHHHhCCCchHHHHHHh-----cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006076 50 RNKNELIQSLCKQGNLRQALDVLS-----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124 (662)
Q Consensus 50 ~~~~~li~~~~~~g~~~~A~~~~~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 124 (662)
.+|+++|.+|.+.|++++|+++|+ .+..||..+|+.++.+|++.++++.|.++|..|.+.|+.||..+||.|+++
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 358889999999999999999998 246799999999999999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchH
Q 006076 125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK 204 (662)
Q Consensus 125 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~ 204 (662)
|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+. |+.||..||+.++.+|+..+. ++
T Consensus 168 y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~--g~~p~~~t~~~ll~a~~~~~~----~~ 241 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED--GSDAEPRTFVVMLRASAGLGS----AR 241 (697)
T ss_pred HhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCChhhHHHHHHHHhcCCc----HH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999 99
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhC
Q 006076 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH 284 (662)
Q Consensus 205 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 284 (662)
.++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++| ...
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M--~~~ 319 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM--RDS 319 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH--HHc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred CCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHH
Q 006076 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS 364 (662)
Q Consensus 285 ~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 364 (662)
|+.||..||++++.+|++.|++++|+++|+.|.+.|+.||..++|+||++|+++|++++|.++|++|.+||+++||+||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 006076 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444 (662)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 444 (662)
+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 445 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
+|.+++++|++.|+..+|++|+.+|+.+|+++.|..+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHHHHHhhhhHHHHHHHhh
Q 006076 525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL 604 (662)
Q Consensus 525 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 604 (662)
++.|++||+++++.+|.|++++..||+.++||+++.++..+|++.||.||+.++++++++++|+..+.+||||||++|||
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l 639 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGL 639 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEecccccCCCcchhhhhhccccceEEEecCCccccccCcccCCCCCC
Q 006076 605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662 (662)
Q Consensus 605 ~~~~~~~~i~~~~~l~~c~~~~~~~~~~s~~~~~~~~~~d~~~~h~f~~g~csc~~~~ 662 (662)
+++++|.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 640 ~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 640 INTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.5e-80 Score=704.58 Aligned_cols=621 Identities=25% Similarity=0.328 Sum_probs=548.9
Q ss_pred ccccchHHHhhccc----cchhhhccCC---CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh--
Q 006076 3 ALQSPQTPQLLRSP----YHTNSIAHLP---PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS-- 73 (662)
Q Consensus 3 ~~~~h~~~~~~g~~----~~~~li~~y~---~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-- 73 (662)
|.++|.++++.|.. +.|+||++|+ ++++|.++| ++|+++|+++ ||++|++|++.|++++|+++|+
T Consensus 105 a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f-~~m~~~d~~~-----~n~li~~~~~~g~~~~A~~~f~~M 178 (857)
T PLN03077 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVF-GKMPERDLFS-----WNVLVGGYAKAGYFDEALCLYHRM 178 (857)
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHH-hcCCCCCeeE-----HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56889999999975 8999999999 899999999 9999998776 5669999999999999999998
Q ss_pred --cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHH
Q 006076 74 --IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNA 151 (662)
Q Consensus 74 --~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 151 (662)
.+..||..||+.++++|+..+++..+.++|..+.+.|+.||..++|+||.+|+++|++++|.++|++|+++|+++||+
T Consensus 179 ~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~ 258 (857)
T PLN03077 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNA 258 (857)
T ss_pred HHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006076 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231 (662)
Q Consensus 152 li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 231 (662)
||.+|++.|++++|+++|++|... |+.||..||+.++.+|++.++ ++.|.++|..+.+.|+.||..+||+|+++
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~--g~~Pd~~ty~~ll~a~~~~g~----~~~a~~l~~~~~~~g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMREL--SVDPDLMTITSVISACELLGD----ERLGREMHGYVVKTGFAVDVSVCNSLIQM 332 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCC----hHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999999 99999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHH
Q 006076 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311 (662)
Q Consensus 232 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~ 311 (662)
|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++| ...|+.||..||++++.+|++.|+++.|.+
T Consensus 333 y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M--~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM--EQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred HHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH--HHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 006076 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391 (662)
Q Consensus 312 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 391 (662)
+|+.+.+.|+.|+..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~ 489 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNS 489 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 599999
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006076 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471 (662)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 471 (662)
.||+.+|.+|++.|+++.+.+++..+. +.|+.++..++++||++|+++|++++|.++|+++ .||..+|++||.+|.+
T Consensus 490 ~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~ 566 (857)
T PLN03077 490 VTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVA 566 (857)
T ss_pred hHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHH
Confidence 999999999999999999999999997 5689999999999999999999999999999998 7999999999999999
Q ss_pred cCCHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH-hCCCcCCCceeEEEECCEEEEEeecCCC
Q 006076 472 HCNVELAERASKRLFEL--EPTNAGNYVLLADVYAAADMWDEVKRVKRLLE-ARGLQKVPGRSRIEVKRKMYSFVSVDEF 548 (662)
Q Consensus 472 ~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 548 (662)
+|+.++|..+|++|.+. .|+ ..+|..++.+|++.|++++|.++|+.|. +.|+.+.... +.. ++.+...
T Consensus 567 ~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~-y~~-------lv~~l~r 637 (857)
T PLN03077 567 HGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH-YAC-------VVDLLGR 637 (857)
T ss_pred cCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH-HHH-------HHHHHHh
Confidence 99999999999999875 454 7899999999999999999999999999 6777554321 111 2344444
Q ss_pred CccHHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHHHHHhhhhHHHH-HHHhhcCCCCCCcEEEEecccccCCCcc
Q 006076 549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA-VAFGLINTSKGETIRITKNLRLCEDCHS 627 (662)
Q Consensus 549 ~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~~~~~~~~i~~~~~l~~c~~~~~ 627 (662)
.+..+ ++.+++++| .+.||......-+..+.....+- -.|+.+ ..+.+.+...+..+.+.+-+...|+..+
T Consensus 638 ~G~~~----eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 638 AGKLT----EAYNFINKM---PITPDPAVWGALLNACRIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred CCCHH----HHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 45555 445677766 57888764333333332111110 012222 1245555555555544555677899999
Q ss_pred hhhhhhccccceEE-------EecCCccccccCcccCC
Q 006076 628 FTKFISKFANKEIL-------VRDVNRFHHFRNGVCSC 658 (662)
Q Consensus 628 ~~~~~s~~~~~~~~-------~~d~~~~h~f~~g~csc 658 (662)
+.++...|..+.+. +.-.+..|-|..|.-|-
T Consensus 710 a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h 747 (857)
T PLN03077 710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESH 747 (857)
T ss_pred HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCC
Confidence 99999888766332 12246788887776543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-67 Score=588.98 Aligned_cols=498 Identities=17% Similarity=0.227 Sum_probs=462.2
Q ss_pred hhhhccCC---CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 006076 19 TNSIAHLP---PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS 95 (662)
Q Consensus 19 ~~li~~y~---~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~~~~~~~ll~~~~~~~~ 95 (662)
..+++.|. ++++|.++| ++|+.++.+.|+...++.++.+|.+.|..++|+.+|+....||..+|+.++.+|++.|+
T Consensus 374 ~~~y~~l~r~G~l~eAl~Lf-d~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 374 IDAYNRLLRDGRIKDCIDLL-EDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHH-HHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 34444443 899999999 99999999999998899999999999999999999997777999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCCccHHHHHHHH
Q 006076 96 LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR----RRTIYVWNALFRALTLAGRGEEVLELYRR 171 (662)
Q Consensus 96 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 171 (662)
++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 47999999999999999999999999999
Q ss_pred HhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 006076 172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR--HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249 (662)
Q Consensus 172 m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 249 (662)
|... |+.||..||+.++.+|++.++ +++|.++|.+|.+ .|+.||..+|++||.+|+++|++++|.++|+.|.
T Consensus 533 M~~~--Gv~PD~vTYnsLI~a~~k~G~----~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 533 MRSK--NVKPDRVVFNALISACGQSGA----VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHc--CCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999 999999999999999999999 9999999999987 6789999999999999999999999999999997
Q ss_pred C----CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCch
Q 006076 250 V----KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325 (662)
Q Consensus 250 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 325 (662)
+ |+..+||++|.+|++.|++++|+++|++| ...|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.||.
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM--~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM--KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 4 57799999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076 326 PVVSALVTMYARCGKLELGQCVFDHMD----KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401 (662)
Q Consensus 326 ~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (662)
.+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999995 6999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh----hcC-------------------CHHHHHHHHHhc---CC
Q 006076 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG----RAN-------------------KLEEAAKIIEDL---RI 455 (662)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~m---~~ 455 (662)
++.|++++|.++|+.|. +.|+.||..+|++|+.++. +++ ..++|..+|++| ++
T Consensus 765 ~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 99999999999999997 5689999999999997743 222 346799999999 68
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCC
Q 006076 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFE-LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528 (662)
Q Consensus 456 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 528 (662)
.||..||++++.++...+..+.+..+++.+.. -.+.+..+|++|++.+.+. .++|..++++|...|+.+..
T Consensus 844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 99999999999877788888888888877643 3455678999999988432 36899999999999997654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-61 Score=540.13 Aligned_cols=498 Identities=13% Similarity=0.182 Sum_probs=256.2
Q ss_pred hHHHHHHHHhCCCchHHHHHHh----cC-CCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhh
Q 006076 52 KNELIQSLCKQGNLRQALDVLS----IE-PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS 126 (662)
Q Consensus 52 ~~~li~~~~~~g~~~~A~~~~~----~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 126 (662)
|..++..+++.|++++|+++|+ .+ ..|+..+++.++.+|.+.|.+++|..++..|.. ||..+|+.||.+|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence 4445555555555555555554 12 233444444555555555555555555544432 45555555555555
Q ss_pred cCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccc
Q 006076 127 HFDSVDDARHVFDKTRR----RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202 (662)
Q Consensus 127 ~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~ 202 (662)
+.|+++.|.++|+.|.+ +|..+||+||.+|++.|++++|.++|++|.+. |+.||..||+.++.+|++.++
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~--Gv~PdvvTynaLI~gy~k~G~---- 522 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA--GVEANVHTFGALIDGCARAGQ---- 522 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCcC----
Confidence 55555555555555432 34455555555555555555555555555555 555555555555555555555
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC------CCCHhHHHHHHHHHHHcCChhHHHHHH
Q 006076 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA------VKNVVSWSAMIACYARNGMAFEALELF 276 (662)
Q Consensus 203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~ 276 (662)
+++|.++|..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||.++|++||.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555552 245555555555555555555555555
Q ss_pred HHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC----
Q 006076 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD---- 352 (662)
Q Consensus 277 ~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---- 352 (662)
++| ...++.|+..+|+.++.+|++.|++++|..+|+.|.+.|+.||..+|++||++|++.|++++|.++|+.|.
T Consensus 603 ~~M--~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 603 QMI--HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHH--HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 555 44555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 006076 353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432 (662)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 432 (662)
.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. ..|+.||..+|++
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~-~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK-RLGLCPNTITYSI 759 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHH
Confidence 245555555555555555555555555555555555555555555555555555555555555553 2345555555555
Q ss_pred HHHHHhhcCCHHHHHHHHHhc---CCCCCHHHHHHHHHHHHh-----------------------cCCHHHHHHHHHHHH
Q 006076 433 MVDLLGRANKLEEAAKIIEDL---RIEPGPKVWGSLLGSCRI-----------------------HCNVELAERASKRLF 486 (662)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~~~~~ 486 (662)
++.+|++.|++++|.+++++| ++.||..+|++++..|.+ .+..++|..+|++|.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 555555555555555555554 344555555555543321 011234445555554
Q ss_pred hcC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHH
Q 006076 487 ELE-PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565 (662)
Q Consensus 487 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 565 (662)
+.+ .+|..+|..++..+.+.+.++.+..+++.|...+..+... .++. .+.|... ...++..++++
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~-~y~~-------Li~g~~~------~~~~A~~l~~e 905 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS-NLST-------LVDGFGE------YDPRAFSLLEE 905 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh-hhHH-------HHHhhcc------ChHHHHHHHHH
Confidence 432 1123445544444445555555555554444333211100 0110 1222211 12367889999
Q ss_pred HHHCCcccCCc
Q 006076 566 MKEKGYVPQTK 576 (662)
Q Consensus 566 m~~~g~~p~~~ 576 (662)
|.+.|+.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99999999986
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.6e-61 Score=533.03 Aligned_cols=405 Identities=23% Similarity=0.367 Sum_probs=383.0
Q ss_pred ccccchHHHhhccc----cchhhhccCC---CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh--
Q 006076 3 ALQSPQTPQLLRSP----YHTNSIAHLP---PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS-- 73 (662)
Q Consensus 3 ~~~~h~~~~~~g~~----~~~~li~~y~---~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-- 73 (662)
|+++|..+.+.|+. +.|+|+++|+ ++++|+++| ++|+++|.++ ||++|.+|++.|++++|+++|+
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf-~~m~~~~~~t-----~n~li~~~~~~g~~~~A~~lf~~M 215 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF-DEMPERNLAS-----WGTIIGGLVDAGNYREAFALFREM 215 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHH-hcCCCCCeee-----HHHHHHHHHHCcCHHHHHHHHHHH
Confidence 57899999999995 8999999999 999999999 9999988776 5669999999999999999998
Q ss_pred --cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHH
Q 006076 74 --IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNA 151 (662)
Q Consensus 74 --~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 151 (662)
.+..||..||+.++.+|+..|....++++|..+.+.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+
T Consensus 216 ~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~ 295 (697)
T PLN03081 216 WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNS 295 (697)
T ss_pred HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006076 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231 (662)
Q Consensus 152 li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 231 (662)
||.+|++.|++++|+++|++|.+. |+.||..||++++.+|++.+. ++.|+++|..+.+.|++||..++|+||++
T Consensus 296 li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~----~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 296 MLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLAL----LEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccc----hHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 999999999999999999999999 999999999999999999999 99999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHH
Q 006076 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311 (662)
Q Consensus 232 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~ 311 (662)
|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++| ...|+.||..||++++.+|++.|.+++|.+
T Consensus 370 y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M--~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM--IAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHH-hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006076 312 IHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389 (662)
Q Consensus 312 ~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 389 (662)
+|+.|.+ .|+.|+..+|++++++|++.|++++|.++|++|+ +|+..+|++|+.+|..+|+.+.|..+++++.+ +.|
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p 525 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGP 525 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCC
Confidence 9999986 6999999999999999999999999999999987 68899999999999999999999999888865 556
Q ss_pred C-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCC
Q 006076 390 S-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR 424 (662)
Q Consensus 390 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 424 (662)
+ ..+|+.+++.|++.|++++|.++++.|. +.|+.
T Consensus 526 ~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~-~~g~~ 560 (697)
T PLN03081 526 EKLNNYVVLLNLYNSSGRQAEAAKVVETLK-RKGLS 560 (697)
T ss_pred CCCcchHHHHHHHHhCCCHHHHHHHHHHHH-HcCCc
Confidence 4 4688888888888888888888888886 44554
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=4e-28 Score=282.81 Aligned_cols=477 Identities=13% Similarity=0.080 Sum_probs=356.3
Q ss_pred CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHhcCCChHHHHHHH
Q 006076 27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNSLSDALNVH 103 (662)
Q Consensus 27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 103 (662)
+.++|.+.| +.+...++... ..|..+...+...|++++|+..|+ ...+.+......++..+.+.|++++|.+++
T Consensus 378 ~~~~A~~~~-~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 378 DFEKAAEYL-AKATELDPENA--AARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CHHHHHHHH-HHHHhcCCCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 888899999 77765544322 236678888888899998888887 222223344555667777888888888888
Q ss_pred HHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCC
Q 006076 104 SHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180 (662)
Q Consensus 104 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~ 180 (662)
..+.+.. +.++.++..+...|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++... .+
T Consensus 455 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~ 530 (899)
T TIGR02917 455 KKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DP 530 (899)
T ss_pred HHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Cc
Confidence 8887653 45667788888888888888888888876543 35566777778888888888888888888765 23
Q ss_pred CChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHH
Q 006076 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWS 257 (662)
Q Consensus 181 p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~ 257 (662)
.+..++..+...+...++ .+++...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+...|.
T Consensus 531 ~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 605 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGN----EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL 605 (899)
T ss_pred CcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 455677777777777777 888888888887765 55667777888888888888888888887753 3567788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006076 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337 (662)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 337 (662)
.+..+|.+.|++++|+..|+++ .... +.+...+..+..++...|++++|..+++.+.+.. +.+...+..++..+.+
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKL--LALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH--HHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 8888888888888888888877 3322 2345567777777788888888888888887653 3456777888888888
Q ss_pred cCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076 338 CGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414 (662)
Q Consensus 338 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (662)
.|++++|.++++.+.+ ++...|..+...|...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.+
T Consensus 682 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888887763 35567777778888888888888888888774 455567777777888888888888888
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-R-IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
+.+.+.. +.+...+..+...|.+.|++++|.+.|+++ . .+++..+++.+...+...|+ ++|+..++++++..|++
T Consensus 760 ~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~ 836 (899)
T TIGR02917 760 EAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI 836 (899)
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC
Confidence 8876542 556777888888888888888888888776 2 23466777777777777777 66888888888777777
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
+..+..++.+|...|++++|.+.++++.+.+.
T Consensus 837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 77777778888888888888888887777554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=7.9e-28 Score=280.30 Aligned_cols=485 Identities=13% Similarity=0.007 Sum_probs=411.3
Q ss_pred chhhhccCC---CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHh
Q 006076 18 HTNSIAHLP---PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCT 91 (662)
Q Consensus 18 ~~~li~~y~---~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~ 91 (662)
...+...|. +.++|...| +.+...++... ..|+.+...+.+.|++++|...|+ ...+.+...+..+...+.
T Consensus 332 ~~~la~~~~~~g~~~~A~~~~-~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (899)
T TIGR02917 332 RRLLASIQLRLGRVDEAIATL-SPALGLDPDDP--AALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL 408 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHH-HHHHhcCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344444444 899999999 88776665433 347789999999999999999998 233345667778888888
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHH
Q 006076 92 HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLEL 168 (662)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 168 (662)
..|++++|.+.+..+.+... ........++..|.+.|++++|.++++++.. .+..+|+.+...+...|++++|.+.
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 487 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487 (899)
T ss_pred hCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999988653 2345667788899999999999999988764 3677899999999999999999999
Q ss_pred HHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006076 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248 (662)
Q Consensus 169 ~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 248 (662)
|+++.+. .+.+...+..+...+...++ +++|.+.+..+++.. +.+..++..+...|.+.|+.++|...|+++
T Consensus 488 ~~~a~~~---~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 488 FEKALSI---EPDFFPAAANLARIDIQEGN----PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred HHHHHhh---CCCcHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999865 23345566777778888888 999999999998876 567888999999999999999999999987
Q ss_pred CC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCch
Q 006076 249 AV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325 (662)
Q Consensus 249 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 325 (662)
.. .+...+..++..|.+.|++++|+.+++++ ... .+.+..++..+..++...|++++|...++.+.+.. +.+.
T Consensus 560 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 635 (899)
T TIGR02917 560 AELNPQEIEPALALAQYYLGKGQLKKALAILNEA--ADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSA 635 (899)
T ss_pred HHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH--HHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 43 35677888999999999999999999998 432 34567889999999999999999999999998875 4467
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 006076 326 PVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402 (662)
Q Consensus 326 ~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 402 (662)
..+..+...|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|.++++.+...+ +++...+..+...+.
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 7888999999999999999999998763 457799999999999999999999999998874 456677888888999
Q ss_pred cCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006076 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELAER 480 (662)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 480 (662)
..|++++|.+.|+.+... .|+..++..++..+.+.|++++|.+.++++ ..+.+..++..+...|...|+.++|..
T Consensus 715 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999753 566688889999999999999999999887 234577888899999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
.++++++..|+++.++..++.+|...|+ .+|...+++.....
T Consensus 792 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 792 HYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 9999999999999999999999999999 88999999887653
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.96 E-value=9e-31 Score=215.41 Aligned_cols=106 Identities=66% Similarity=0.973 Sum_probs=97.2
Q ss_pred ceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHHHCCcccCCccccccCChHHH--------HHHHhhhhHHHHH
Q 006076 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK--------ERIVLGHSEKLAV 600 (662)
Q Consensus 529 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~ 600 (662)
|+||+++ |.|++|+.+||+. ++..+|...||.|+...+.|+++++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899986 9999999999988 366788889999999999998877665 5688999999999
Q ss_pred HHhhcCCCCCCcEEEEecc-cccCCCcchhhhhhccccceEEEecCCcccccc
Q 006076 601 AFGLINTSKGETIRITKNL-RLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652 (662)
Q Consensus 601 ~~~~~~~~~~~~i~~~~~l-~~c~~~~~~~~~~s~~~~~~~~~~d~~~~h~f~ 652 (662)
+||++++ +|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899998 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=1.3e-19 Score=212.82 Aligned_cols=475 Identities=15% Similarity=0.090 Sum_probs=278.9
Q ss_pred CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh--cCCCCCHhhH-----------------HHHH
Q 006076 27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS--IEPNPTQHTY-----------------ELLL 87 (662)
Q Consensus 27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~p~~~~~-----------------~~ll 87 (662)
+.|.|++.+ +++...++..... +..++..+.+.|+.++|...++ ....|+...+ ....
T Consensus 43 ~~d~a~~~l-~kl~~~~p~~p~~--~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 43 REDLVRQSL-YRLELIDPNNPDV--IAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred ChHHHHHHH-HHHHccCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 667777777 6666555544333 5667777778888888887777 2233333222 2223
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCChhH-HHHHHHHhhcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCCcc
Q 006076 88 LSCTHHNSLSDALNVHSHLTDNGFDQDPFL-VTKLINVYSHFDSVDDARHVFDKTRRR---TIYVWNALFRALTLAGRGE 163 (662)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~ 163 (662)
..+...|++++|.+.+..+.+.. +|+... ...+.......|+.++|++.|+++.+. +...+..+...+...|+++
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 34566778888888888777653 223221 111112222357777888888776643 4456777777777778888
Q ss_pred HHHHHHHHHhhCCC----------------CCC--------------CChhhH-------------------H--HHHHH
Q 006076 164 EVLELYRRMNGTGT----------------GIR--------------SDRFTY-------------------T--YVLKA 192 (662)
Q Consensus 164 ~A~~l~~~m~~~~~----------------g~~--------------p~~~t~-------------------~--~ll~~ 192 (662)
+|++.|+++..... +.. |+...+ . ..-..
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 88887777654310 000 110000 0 00122
Q ss_pred HHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--CC---HhHHHHH--------
Q 006076 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--KN---VVSWSAM-------- 259 (662)
Q Consensus 193 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~---~~~~~~l-------- 259 (662)
+...++ +++|...+..+++.. +.+..++..|...|.+.|++++|...|++..+ |+ ...|..+
T Consensus 279 ~~~~g~----~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 279 AVDSGQ----GGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHCCC----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 333455 888888888888764 45677788888888888888888888877643 21 1223222
Q ss_pred ----HHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006076 260 ----IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335 (662)
Q Consensus 260 ----i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 335 (662)
...+.+.|++++|+..|++. .... +.+...+..+...+...|++++|.+.++.+++... .+...+..+...|
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~A--l~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~ 429 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQA--RQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 33566788888888888877 3322 22455566677778888888888888888877642 2334444444444
Q ss_pred HhcCChHHHHHHHhhCCCCC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHh
Q 006076 336 ARCGKLELGQCVFDHMDKRD------------VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACS 402 (662)
Q Consensus 336 ~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 402 (662)
. .++.++|..+++.+.... ...+..+...+...|++++|++.|++..+ ..|+ ...+..+...+.
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~--~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA--LDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3 234455555544443210 11233344445555666666666666555 2343 234444555556
Q ss_pred cCCCHHHHHHHHHHhHHhcCCCCChHHHH--------------------------------------------HHHHHHh
Q 006076 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYA--------------------------------------------CMVDLLG 438 (662)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~li~~~~ 438 (662)
+.|++++|...++.+.+.. +.+...+. .+.+.+.
T Consensus 507 ~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 6666666666666554321 11222111 2233445
Q ss_pred hcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076 439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (662)
..|+.++|..+++.- +++...+..+...+...|+.++|+..++++++.+|+++.++..++.+|...|++++|.+.++.
T Consensus 585 ~~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 585 DSGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HCCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555666666655532 234445566667777778888888888888777777777777777777777888888777776
Q ss_pred HHh
Q 006076 519 LEA 521 (662)
Q Consensus 519 m~~ 521 (662)
..+
T Consensus 663 ll~ 665 (1157)
T PRK11447 663 LPA 665 (1157)
T ss_pred Hhc
Confidence 654
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=4.4e-19 Score=208.25 Aligned_cols=377 Identities=11% Similarity=0.014 Sum_probs=238.6
Q ss_pred HHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChh------------hHH
Q 006076 123 NVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF------------TYT 187 (662)
Q Consensus 123 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~------------t~~ 187 (662)
..+...|++++|...|++..+ .+...+..+...|.+.|++++|+..|++..+. .|+.. .|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~----~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL----DPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCccchhHHHHHHHhhhHH
Confidence 344455555555555554432 23445555555555555555555555555543 11110 010
Q ss_pred ---HHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-CHhHH-----
Q 006076 188 ---YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--K-NVVSW----- 256 (662)
Q Consensus 188 ---~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~----- 256 (662)
..-..+...++ +++|...+..+++.. +.+...+..|...|.+.|++++|.+.|++..+ | +...+
T Consensus 353 ~~~~~g~~~~~~g~----~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 353 LLIQQGDAALKANN----LAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHHHCCC----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11123334444 555555555555543 33344455555555555555555555555432 1 22222
Q ss_pred -------------------------------------HHHHHHHHHcCChhHHHHHHHHHhhhhCCCcC-CHHHHHHHHH
Q 006076 257 -------------------------------------SAMIACYARNGMAFEALELFREMIMESHDLCP-NSVTMVSVLQ 298 (662)
Q Consensus 257 -------------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~t~~~ll~ 298 (662)
..+...+...|++++|++.|++. .. ..| +...+..+..
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A--l~--~~P~~~~~~~~LA~ 503 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR--LA--LDPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH--HH--hCCCCHHHHHHHHH
Confidence 23344455677777777777766 22 224 3445556666
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC----Chh---------HHHHHHHH
Q 006076 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR----DVV---------SWNSLISS 365 (662)
Q Consensus 299 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~---------~~~~li~~ 365 (662)
.+...|++++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +.. .+..+...
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 6777777777777777776643 223444444455566677777777777776531 111 12234566
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006076 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445 (662)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 445 (662)
+...|+.++|+++++. .+++...+..+...+.+.|++++|...|+...+.. +.+...+..++..|...|++++
T Consensus 583 l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHH
Confidence 7778888888888772 34455666778888899999999999999998642 4468889999999999999999
Q ss_pred HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCChHHHHHHHH
Q 006076 446 AAKIIEDLR-IEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA------GNYVLLADVYAAADMWDEVKRVKR 517 (662)
Q Consensus 446 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 517 (662)
|++.++... ..| +..++..+..++...|+.++|...++++++..|+++ ..+..++.++.+.|++++|...++
T Consensus 656 A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 656 ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999873 344 456677788888899999999999999998776544 355667889999999999999998
Q ss_pred HHH
Q 006076 518 LLE 520 (662)
Q Consensus 518 ~m~ 520 (662)
+..
T Consensus 736 ~Al 738 (1157)
T PRK11447 736 DAM 738 (1157)
T ss_pred HHH
Confidence 775
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=7.7e-20 Score=182.08 Aligned_cols=446 Identities=14% Similarity=0.129 Sum_probs=349.9
Q ss_pred HHHHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCC
Q 006076 53 NELIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129 (662)
Q Consensus 53 ~~li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 129 (662)
..+..-..+.|++++|.+--. ...+.+......+-..+.+..+++...+--...++.. +.-..+|..+.+.+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 346777788999999987655 2222223333333344555555555443333333322 334568889999999999
Q ss_pred ChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHH
Q 006076 130 SVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206 (662)
Q Consensus 130 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a 206 (662)
++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+. .|+.+...+-+.-+. ...|++++|
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql----nP~l~ca~s~lgnLl---ka~Grl~ea 203 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL----NPDLYCARSDLGNLL---KAEGRLEEA 203 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc----CcchhhhhcchhHHH---Hhhcccchh
Confidence 99999999997765 36689999999999999999999999998854 666543332222111 123338999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHhhhh
Q 006076 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN---VVSWSAMIACYARNGMAFEALELFREMIMES 283 (662)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 283 (662)
..-+...++.. +.-..+|+.|...+-..|+...|..-|++...-| ...|-.|...|...+.+++|+..|.+.
T Consensus 204 ~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA---- 278 (966)
T KOG4626|consen 204 KACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRA---- 278 (966)
T ss_pred HHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHH----
Confidence 99998888764 3346788999999999999999999999986533 457888999999999999999999866
Q ss_pred CCCcCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHH
Q 006076 284 HDLCPN-SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-DVVSW 359 (662)
Q Consensus 284 ~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~ 359 (662)
...+|+ .+.+..+...|-..|.+|.|...+++.++.. +.-+..|+.|..++-..|++.+|.+.+.+... | -..+.
T Consensus 279 l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam 357 (966)
T KOG4626|consen 279 LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAM 357 (966)
T ss_pred HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHH
Confidence 345565 4667777777889999999999999998864 22367999999999999999999999998764 3 35688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHH
Q 006076 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLL 437 (662)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~ 437 (662)
+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|...+++..+ |+|+ ...|+.+...|
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHH
Confidence 8999999999999999999999888 66664 6788999999999999999999999874 6786 56899999999
Q ss_pred hhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHH
Q 006076 438 GRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515 (662)
Q Consensus 438 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (662)
-..|+.+.|.+.+.+. .+.|. ....+.|.+.|...|++.+|+..++..+.++|+.+.+|..++..+.--.+|.+--+.
T Consensus 433 ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 9999999999999887 56664 467889999999999999999999999999999999999998888766677664333
Q ss_pred HH
Q 006076 516 KR 517 (662)
Q Consensus 516 ~~ 517 (662)
++
T Consensus 513 ~~ 514 (966)
T KOG4626|consen 513 MK 514 (966)
T ss_pred HH
Confidence 33
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=9.2e-18 Score=188.45 Aligned_cols=469 Identities=11% Similarity=0.012 Sum_probs=322.7
Q ss_pred CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh--cCCCCCHhhHHHHHHHHhcCCChHHHHHHHH
Q 006076 27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS--IEPNPTQHTYELLLLSCTHHNSLSDALNVHS 104 (662)
Q Consensus 27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 104 (662)
+.++|...| +...+.||.+... +..+...|.+.|++++|+..++ -...|+...|..++... ++..+|..+++
T Consensus 59 d~~~A~~~l-~~Al~~dP~n~~~--~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 59 DEATAIREF-EYIHQQVPDNIPL--TLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CHHHHHHHH-HHHHHhCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 788999999 8888888877443 7889999999999999999999 33445555555544333 88889999999
Q ss_pred HHHHhCCCCChhHHHHHHHH--------hhcCCChHHHHHHHhcCCCCC--cch-HHHHHHHHHhcCCccHHHHHHHHHh
Q 006076 105 HLTDNGFDQDPFLVTKLINV--------YSHFDSVDDARHVFDKTRRRT--IYV-WNALFRALTLAGRGEEVLELYRRMN 173 (662)
Q Consensus 105 ~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~~~--~~~-~~~li~~~~~~g~~~~A~~l~~~m~ 173 (662)
++.+.. +-+..++..+... |.+.+...++++ . +...++ ..+ .-.+...|.+.|++++|++++.++.
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-l-r~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-D-ATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-H-hhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999875 3345566666665 777766677776 3 333333 333 4444889999999999999999999
Q ss_pred hCCCCCCCChhh-HHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--
Q 006076 174 GTGTGIRSDRFT-YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-- 250 (662)
Q Consensus 174 ~~~~g~~p~~~t-~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 250 (662)
+. + |.... ...+-.++...-. -+.+..++.. .+..+..+..++.+.|.+.|+.++|.+++.+++.
T Consensus 210 k~--~--pl~~~~~~~L~~ay~q~l~----~~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 210 QQ--N--TLSAAERRQWFDVLLAGQL----DDRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred hc--C--CCCHHHHHHHHHHHHHhhC----HHHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 87 3 33333 3444445544222 2555555332 3446888999999999999999999999988751
Q ss_pred ---CCHhHH--H----------------------------HHHH------------------------------------
Q 006076 251 ---KNVVSW--S----------------------------AMIA------------------------------------ 261 (662)
Q Consensus 251 ---~~~~~~--~----------------------------~li~------------------------------------ 261 (662)
|+..+| + .++.
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 110000 0 0011
Q ss_pred ---------------------------HHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHcc-----------
Q 006076 262 ---------------------------CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL----------- 303 (662)
Q Consensus 262 ---------------------------~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~----------- 303 (662)
-..+.|+.++|.++|+........-.++......++..+.+.
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 113456666666666655210111112122222223322222
Q ss_pred ----------------------------------------------------CCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006076 304 ----------------------------------------------------AALEQGKMIHGYILRRGLDSILPVVSAL 331 (662)
Q Consensus 304 ----------------------------------------------------~~~~~a~~~~~~~~~~g~~~~~~~~~~l 331 (662)
++.++|...+....... |+......+
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~l 515 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAV 515 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHH
Confidence 34444555455444432 343333334
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHH
Q 006076 332 VTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGLVE 408 (662)
Q Consensus 332 i~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 408 (662)
...+...|++++|...|+++.. |+...+..+...+.+.|+.++|...|++..+.. |+. ..+..+.......|+++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHH
Confidence 4445678888888888887653 445566777778888888888898888888753 443 33334444555679999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006076 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLF 486 (662)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (662)
+|...++...+ +.|+...+..+...+.+.|++++|...+++. ...| +...+..+..++...|+.++|+..+++++
T Consensus 594 eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999998875 3578888999999999999999999999887 4455 55677788888999999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 487 ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 487 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
+.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999887643
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=5.5e-19 Score=176.09 Aligned_cols=417 Identities=14% Similarity=0.144 Sum_probs=333.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCC
Q 006076 85 LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR---TIYVWNALFRALTLAGR 161 (662)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~ 161 (662)
.+..-.-+.|++.+|++-....-... +.+....-.+-..|....+++....--..-.+. -..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444557789998877555443332 122222223335566666666544332222222 34689999999999999
Q ss_pred ccHHHHHHHHHhhCCCCCCC-ChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHH
Q 006076 162 GEEVLELYRRMNGTGTGIRS-DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV-HIMTTLIDMYARFGCVM 239 (662)
Q Consensus 162 ~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~ 239 (662)
.++|+.+|+.|.+. +| ....|..+-.++...++ .+.|.+.+...++.. |+. .+.+.+-+..-..|++.
T Consensus 132 ~~~al~~y~~aiel----~p~fida~inla~al~~~~~----~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ 201 (966)
T KOG4626|consen 132 LQDALALYRAAIEL----KPKFIDAYINLAAALVTQGD----LELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLE 201 (966)
T ss_pred HHHHHHHHHHHHhc----CchhhHHHhhHHHHHHhcCC----CcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccc
Confidence 99999999999975 45 45578888889998888 999999999988764 443 44455666666789999
Q ss_pred HHHHHHHcCCC--CC-HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 006076 240 YAGFVFSQMAV--KN-VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN-SVTMVSVLQACAALAALEQGKMIHGY 315 (662)
Q Consensus 240 ~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~ 315 (662)
+|...|.+..+ |. .+.|+.|...+..+|+...|+..|++. -.+.|+ ...|..+-..+...+.++.|...+..
T Consensus 202 ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA----vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 202 EAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA----VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred hhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh----hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 99998887654 32 468999999999999999999999976 345565 35788888888889999999998888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-
Q 006076 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RD-VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP- 391 (662)
Q Consensus 316 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 391 (662)
+.... +....++..|.-.|...|.++.|...+++..+ |+ ...|+.|..++-..|++.+|...|.+.+. +.|+.
T Consensus 278 Al~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~ha 354 (966)
T KOG4626|consen 278 ALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHA 354 (966)
T ss_pred HHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccH
Confidence 77653 23466777788889999999999999998874 54 45899999999999999999999999988 56664
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHH
Q 006076 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGS 468 (662)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~ 468 (662)
.+.+.|...+...|.+++|..+|....+ +.| -....+.|...|-..|++++|+.-+++. .++|+ ...++.+...
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 6888999999999999999999998875 345 4667899999999999999999999987 78886 4689999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
|...|+...|.+.+.+++..+|.-+.++..|+.+|-.+|++.+|+.-++...+-
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999987753
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=6e-17 Score=178.69 Aligned_cols=417 Identities=11% Similarity=0.015 Sum_probs=290.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhc
Q 006076 83 YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLA 159 (662)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 159 (662)
+......+.+.|+++.|...+...++. .|++..|..+..+|.+.|++++|.+.++...+ .+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 344556677889999999999988874 56778888899999999999999998886554 3556888888899999
Q ss_pred CCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 006076 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239 (662)
Q Consensus 160 g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 239 (662)
|++++|+.-|......+ +..+ .....++.... ...+.......++.. +++...+..+.. |.......
T Consensus 208 g~~~eA~~~~~~~~~~~-~~~~--~~~~~~~~~~l--------~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~ 274 (615)
T TIGR00990 208 GKYADALLDLTASCIID-GFRN--EQSAQAVERLL--------KKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPK 274 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCcc--HHHHHHHHHHH--------HHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCC
Confidence 99999998887665441 1111 11111121111 111122222222221 222222222222 22222222
Q ss_pred HHHHHHHcCCCCCH---hHHHHHHHHH---HHcCChhHHHHHHHHHhhhhCC-CcCC-HHHHHHHHHHHHccCCHHHHHH
Q 006076 240 YAGFVFSQMAVKNV---VSWSAMIACY---ARNGMAFEALELFREMIMESHD-LCPN-SVTMVSVLQACAALAALEQGKM 311 (662)
Q Consensus 240 ~A~~~f~~~~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~-~~p~-~~t~~~ll~a~~~~~~~~~a~~ 311 (662)
.+..-++...+-+. ..+..+...+ ...+++++|++.|++. ...+ ..|+ ...+..+...+...|++++|..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a--l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKA--LDLGKLGEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH--HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 22221221111111 1111111111 2346889999999988 4433 3343 4556666677788999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006076 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388 (662)
Q Consensus 312 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 388 (662)
.++.+++.. +.+...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .
T Consensus 353 ~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~ 429 (615)
T TIGR00990 353 DLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--D 429 (615)
T ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--C
Confidence 999998764 23456788889999999999999999997753 45778999999999999999999999999884 5
Q ss_pred CC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCH-H-----
Q 006076 389 PS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGP-K----- 460 (662)
Q Consensus 389 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~----- 460 (662)
|+ ...+..+..++.+.|++++|...|+...+. .+.+...++.+...|...|++++|.+.|++. .+.|+. .
T Consensus 430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~ 507 (615)
T TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507 (615)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence 54 466777788899999999999999998754 2456889999999999999999999999986 344421 1
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 461 --VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 461 --~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.++..+..+...|++++|...++++++++|++...+..++.+|.+.|++++|.+.+++..+
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1222223344469999999999999999999988999999999999999999999998765
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=5.6e-17 Score=182.19 Aligned_cols=481 Identities=10% Similarity=0.032 Sum_probs=339.7
Q ss_pred CCchhhHHhhhhccCCCCccccCCCChHHHHHH--------HHhCCCchHHHHHHh-cCCCCCHhhHHHH-HHHHhcCCC
Q 006076 26 PPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQS--------LCKQGNLRQALDVLS-IEPNPTQHTYELL-LLSCTHHNS 95 (662)
Q Consensus 26 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~-~~~~p~~~~~~~l-l~~~~~~~~ 95 (662)
.+.++|..++ +++...++..-.. +..+... |.+.+...++++ .+ ..+.|+..+.... ...+...++
T Consensus 122 ~~~~kA~~~y-e~l~~~~P~n~~~--~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 122 PVEVKSVTTV-EELLAQQKACDAV--PTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred ccChhHHHHH-HHHHHhCCCChhH--HHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence 4667788888 7777666654333 3334444 777777777777 44 3344455555555 888999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhc-CCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhh
Q 006076 96 LSDALNVHSHLTDNGFDQDPFLVTKLINVYSH-FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174 (662)
Q Consensus 96 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 174 (662)
++++..++..+.+.+. .+..-...|..+|.. .++ +.|..+++...+.|+..+..+...|.+.|+.++|.++++++..
T Consensus 198 w~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 198 WSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 9999999999999873 345556677778887 466 8888887765556888999999999999999999999998765
Q ss_pred CCCCCCCChhhHHHHHHHH------------------------------HhCCC--------------------------
Q 006076 175 TGTGIRSDRFTYTYVLKAC------------------------------VASSC-------------------------- 198 (662)
Q Consensus 175 ~~~g~~p~~~t~~~ll~~~------------------------------~~~~~-------------------------- 198 (662)
.. --.|+..++-..+.-. .+.+.
T Consensus 276 ~~-~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 276 LF-TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred cc-cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 41 0112222222211110 00000
Q ss_pred ---------------------------------CccchHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCCH---HH
Q 006076 199 ---------------------------------GFSLLKHGKEIHASVLRH-G-YNGIVHIMTTLIDMYARFGCV---MY 240 (662)
Q Consensus 199 ---------------------------------~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~y~~~g~~---~~ 240 (662)
..|+.++|.+++...... + -..+....+-|+..|.+.+.+ ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 012233344444333321 0 111333445667777776652 22
Q ss_pred HHHH-------------------------HHcCC---CC--CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH
Q 006076 241 AGFV-------------------------FSQMA---VK--NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290 (662)
Q Consensus 241 A~~~-------------------------f~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~ 290 (662)
|..+ +.... .+ +...|..+..++.. ++.++|+..|.+. .. ..|+.
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A--l~--~~Pd~ 509 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA--EQ--RQPDA 509 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH--HH--hCCch
Confidence 2222 11111 12 45567777777776 7888899977766 22 33666
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHH---HHHHHHH
Q 006076 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN---SLISSYG 367 (662)
Q Consensus 291 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~---~li~~~~ 367 (662)
.....+..++...|++++|...++.+... +|+...+..+...+.+.|++++|...|++..+.++..++ .+.....
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~ 587 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 55445555567899999999999987654 344455667788899999999999999987753333233 3333444
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006076 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447 (662)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 447 (662)
+.|++++|+..|++..+ ..|+...+..+..++.+.|++++|...++...+.. +.+...++.+...+...|++++|+
T Consensus 588 ~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 588 IPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred hCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 55999999999999998 56788889999999999999999999999998642 446778899999999999999999
Q ss_pred HHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 448 KIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 448 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
+.+++. ...| +...+..+..++...|++++|+..++++++++|++..+....+++..+..+++.|.+-++..-.-++
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999987 4455 6778999999999999999999999999999999999999999999999999999998877665444
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=3.5e-18 Score=178.88 Aligned_cols=291 Identities=14% Similarity=0.095 Sum_probs=225.2
Q ss_pred HHHHhcCCHHHHHHHHHcCCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCC---HHHHHHHHHHHHcc
Q 006076 230 DMYARFGCVMYAGFVFSQMAVK---NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN---SVTMVSVLQACAAL 303 (662)
Q Consensus 230 ~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~---~~t~~~ll~a~~~~ 303 (662)
..+...|++++|...|.++.+. +..+|..+...+.+.|++++|+.+++.+ ...+..++ ..++..+...+...
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~--l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNL--LSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3456678888888888887532 4457778888888888888888888887 43321111 24566677778888
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC------hhHHHHHHHHHHhcCChHHH
Q 006076 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RD------VVSWNSLISSYGVHGYGGKA 375 (662)
Q Consensus 304 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~------~~~~~~li~~~~~~g~~~~A 375 (662)
|+++.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+ |+ ...|..+...+.+.|+.++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888887653 34567788888888888888888888888753 21 12456677788889999999
Q ss_pred HHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 006076 376 IQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS--VEHYACMVDLLGRANKLEEAAKIIED 452 (662)
Q Consensus 376 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (662)
...|+++.+. .|+ ...+..+...+.+.|++++|.++++.+.+. .|+ ...++.++.+|.+.|++++|...+++
T Consensus 200 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 200 RALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999874 344 456777788899999999999999998753 333 45678899999999999999999998
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHhCCCcCCC
Q 006076 453 L-RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA---ADMWDEVKRVKRLLEARGLQKVP 528 (662)
Q Consensus 453 m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~ 528 (662)
+ ...|+...+..+...+...|++++|...++++++..|++. .+..+...+.. .|+.+++..++++|.+++++++|
T Consensus 275 ~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 275 ALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 7 4567777778888999999999999999999999999864 55555665553 56999999999999999988887
Q ss_pred c
Q 006076 529 G 529 (662)
Q Consensus 529 ~ 529 (662)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 6
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.3e-18 Score=180.19 Aligned_cols=290 Identities=13% Similarity=0.099 Sum_probs=180.9
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCC-------cchHHHHHHHHHhcCCcc
Q 006076 91 THHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT-------IYVWNALFRALTLAGRGE 163 (662)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~ 163 (662)
...|++++|...+..+.+.+ +.+..++..+...|.+.|++++|..+++.+.... ...++.+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44566666666666666653 2234456666666666666666666666554321 134566666666677777
Q ss_pred HHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHH
Q 006076 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI----VHIMTTLIDMYARFGCVM 239 (662)
Q Consensus 164 ~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~ 239 (662)
+|+.+|+++.+. -+++..++..+...+...++ +++|.+.+..+.+.+..+. ...+..+...|.+.|+++
T Consensus 125 ~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 125 RAEELFLQLVDE---GDFAEGALQQLLEIYQQEKD----WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HHHHHHHHHHcC---CcchHHHHHHHHHHHHHhch----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 777777776653 23345566666666666666 6666666666665542221 123445666677777777
Q ss_pred HHHHHHHcCCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006076 240 YAGFVFSQMAV--K-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316 (662)
Q Consensus 240 ~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 316 (662)
+|.+.|+++.+ | +...+..+...|.+.|++++|+++|+++ ...+......++..+..++...|++++|...++.+
T Consensus 198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~--~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERV--EEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777642 2 3456667777777777778887777777 33221111345566667777777777777777777
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCH
Q 006076 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD--KRDVVSWNSLISSYGV---HGYGGKAIQIFKEMIYHGVSPSP 391 (662)
Q Consensus 317 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 391 (662)
.+.. |+...+..++..|.+.|++++|.++|+++. .|+..+++.++..+.. .|+.++++.++++|.+.++.|++
T Consensus 276 ~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 276 LEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6653 444455667777777777777777776654 3666677766666553 44677777777777776666655
Q ss_pred h
Q 006076 392 I 392 (662)
Q Consensus 392 ~ 392 (662)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 4
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=3.7e-16 Score=175.55 Aligned_cols=393 Identities=9% Similarity=-0.021 Sum_probs=213.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCCc
Q 006076 86 LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT---RRRTIYVWNALFRALTLAGRG 162 (662)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~ 162 (662)
.+......|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++. ...+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3444445555666665555554421 223334555555566666666666666552 222344555555566666666
Q ss_pred cHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 006076 163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG 242 (662)
Q Consensus 163 ~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 242 (662)
++|+..+++.... .|+...+..+-.++...++ .+.|...+..+++.. +.+..++..+...+.+.|..+.|.
T Consensus 100 ~eA~~~l~~~l~~----~P~~~~~~~la~~l~~~g~----~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 100 DEALVKAKQLVSG----APDKANLLALAYVYKRAGR----HWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHHHHHHHHHHh----CCCCHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 6666666666543 2222224444445555555 666666666666553 334455555666666677777777
Q ss_pred HHHHcCCCCCHh--------HHHHHHHHHH-----HcCCh---hHHHHHHHHHhhhhCCCcCCHH-HHH----HHHHHHH
Q 006076 243 FVFSQMAVKNVV--------SWSAMIACYA-----RNGMA---FEALELFREMIMESHDLCPNSV-TMV----SVLQACA 301 (662)
Q Consensus 243 ~~f~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~~~~~~p~~~-t~~----~ll~a~~ 301 (662)
+.++.... ++. ....++.... ..+++ ++|++.++.+. ......|+.. .+. ..+.++.
T Consensus 171 ~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll-~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 171 GAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE-ALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH-hhcccCCccchHHHHHHHHHHHHHH
Confidence 77776654 211 1111222211 12223 66777777773 1112223221 111 1133445
Q ss_pred ccCCHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-----hhHHHHHHHHHHhcCChH
Q 006076 302 ALAALEQGKMIHGYILRRGLD-SILPVVSALVTMYARCGKLELGQCVFDHMDK--RD-----VVSWNSLISSYGVHGYGG 373 (662)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-----~~~~~~li~~~~~~g~~~ 373 (662)
..++.++|+..|+.+.+.+.+ |+ .....+...|...|++++|...|+++.+ |. ...+..+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 567777777777777766522 22 1222246677777777777777776643 21 123455555677777777
Q ss_pred HHHHHHHHHHHcCC-----------CCCH---hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 006076 374 KAIQIFKEMIYHGV-----------SPSP---ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439 (662)
Q Consensus 374 ~A~~~~~~m~~~g~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 439 (662)
+|+++++++..... .|+. ..+..+...+...|++++|+++++.+... .+.+...+..+...+..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 77777777766310 1221 12334444556666666666666666543 23455666666666666
Q ss_pred cCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076 440 ANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493 (662)
Q Consensus 440 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (662)
.|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 66666666666665 33443 34445555556666666666666666666666654
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=4.6e-16 Score=171.13 Aligned_cols=351 Identities=11% Similarity=-0.006 Sum_probs=269.1
Q ss_pred cCCChHHHHHHHhcCCCC------CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCc
Q 006076 127 HFDSVDDARHVFDKTRRR------TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF 200 (662)
Q Consensus 127 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~ 200 (662)
+..+++.-.-.|..-+++ +..-...++..+.+.|++++|+.+++..... .+-+...+..+..+....++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~---~p~~~~~l~~l~~~~l~~g~-- 91 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT---AKNGRDLLRRWVISPLASSQ-- 91 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh---CCCchhHHHHHhhhHhhcCC--
Confidence 455666555556555432 2233445677788899999999999998876 22223344445555566777
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-CHhHHHHHHHHHHHcCChhHHHHHHH
Q 006076 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--K-NVVSWSAMIACYARNGMAFEALELFR 277 (662)
Q Consensus 201 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~ 277 (662)
++.|.+.+..+++.. +.+...+..+...+.+.|++++|...|++... | +...|..+...+.+.|++++|...++
T Consensus 92 --~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 92 --PDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred --HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 999999999998875 55677888889999999999999999998753 3 56788899999999999999999998
Q ss_pred HHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---C
Q 006076 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---R 354 (662)
Q Consensus 278 ~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~ 354 (662)
.+ .... |+.......+..+...|++++|...++.+++....++......+...+.+.|++++|...|++..+ .
T Consensus 169 ~~--~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~ 244 (656)
T PRK15174 169 TQ--AQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD 244 (656)
T ss_pred HH--HHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 77 3332 332222222334778899999999999987765444455556667888999999999999998763 3
Q ss_pred ChhHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHH
Q 006076 355 DVVSWNSLISSYGVHGYGGK----AIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429 (662)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 429 (662)
+...+..+...|.+.|++++ |+..|++..+ ..|+ ...+..+...+...|++++|...++...+.. +.+...
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a 320 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYV 320 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 56688889999999999985 8999999988 4555 4678888889999999999999999988642 335667
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076 430 YACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVW-GSLLGSCRIHCNVELAERASKRLFELEPTNA 493 (662)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (662)
+..+...|.+.|++++|...++++ ...|+...+ ..+..++...|+.++|...++++++..|++.
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 888899999999999999999987 346665443 3456778899999999999999999998853
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.1e-15 Score=171.84 Aligned_cols=395 Identities=11% Similarity=0.034 Sum_probs=299.5
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHH
Q 006076 112 DQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188 (662)
Q Consensus 112 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ 188 (662)
..++....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.++|++..+. -+.+......
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL---EPQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 34555566677788889999999999988764 24445899999999999999999999998865 2333445666
Q ss_pred HHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-CHhHHHHHHHHHHH
Q 006076 189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--K-NVVSWSAMIACYAR 265 (662)
Q Consensus 189 ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~ 265 (662)
+...+...++ .++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+.+
T Consensus 89 la~~l~~~g~----~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 89 LILTLADAGQ----YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHCCC----HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6677788888 999999999999874 55666 88899999999999999999998864 3 56667778888999
Q ss_pred cCChhHHHHHHHHHhhhhCCCcCCHH------HHHHHHHHH-----HccCCH---HHHHHHHHHHHHh-CCCCchh-H-H
Q 006076 266 NGMAFEALELFREMIMESHDLCPNSV------TMVSVLQAC-----AALAAL---EQGKMIHGYILRR-GLDSILP-V-V 328 (662)
Q Consensus 266 ~g~~~~A~~~~~~m~~~~~~~~p~~~------t~~~ll~a~-----~~~~~~---~~a~~~~~~~~~~-g~~~~~~-~-~ 328 (662)
.|..++|++.++.. .. .|+.. .....+... ...+++ ++|.+.++.+++. ...|+.. . .
T Consensus 163 ~~~~e~Al~~l~~~--~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 163 NRLSAPALGAIDDA--NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred CCChHHHHHHHHhC--CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 99999999999876 32 33320 111122221 112233 6788888888765 2233221 1 1
Q ss_pred HHH---HHHHHhcCChHHHHHHHhhCCCCC--hh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HhHHHH
Q 006076 329 SAL---VTMYARCGKLELGQCVFDHMDKRD--VV--SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-----PISFVS 396 (662)
Q Consensus 329 ~~l---i~~y~~~g~~~~A~~~~~~m~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ 396 (662)
.+. +..+...|++++|+..|+.+.+.+ .. .-..+...|...|++++|+..|+++.... |. ......
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~ 315 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHH
Confidence 111 234457799999999999998532 11 12225778999999999999999987643 32 234566
Q ss_pred HHHHHhcCCCHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHH
Q 006076 397 VLGACSHAGLVEEGKMLFESMRKEHM----------IRPS---VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKV 461 (662)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 461 (662)
+..++...|++++|.++++.+.+... -.|+ ...+..+...+...|++++|+++++++ ...| +...
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l 395 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGL 395 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 67788999999999999999975421 0122 235667888999999999999999987 3334 6778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
+..+...+...|+.++|+..++++++++|+++..+..++..+.+.|++++|..+++.+.+.
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999998864
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=2.9e-15 Score=165.33 Aligned_cols=435 Identities=11% Similarity=0.009 Sum_probs=299.7
Q ss_pred hHHHHHHHHhCCCchHHHHHHh--cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCC
Q 006076 52 KNELIQSLCKQGNLRQALDVLS--IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129 (662)
Q Consensus 52 ~~~li~~~~~~g~~~~A~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 129 (662)
+...-..+.+.|++++|+..|+ ....|+...|..+..++...|++++|.+.+...++.. +.+...+..+..+|...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 3356678889999999999999 4566788889999999999999999999999999864 335668888999999999
Q ss_pred ChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHH
Q 006076 130 SVDDARHVFDKTRRRT---IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206 (662)
Q Consensus 130 ~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a 206 (662)
++++|..-|......+ ......++.-+.. ..+...........+...|........+... . ....
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~----~~~~ 276 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSF----R----PKPR 276 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc----c----CCcc
Confidence 9999998876543221 1111112211111 2233333333332111122222112221111 1 0111
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHH------HhcCCHHHHHHHHHcCCC-----C-CHhHHHHHHHHHHHcCChhHHHH
Q 006076 207 KEIHASVLRHGYNGIVHIMTTLIDMY------ARFGCVMYAGFVFSQMAV-----K-NVVSWSAMIACYARNGMAFEALE 274 (662)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~~~~li~~y------~~~g~~~~A~~~f~~~~~-----~-~~~~~~~li~~~~~~g~~~~A~~ 274 (662)
..-+....+ ..++ ....++..+ ...+++++|.+.|+...+ + +...|+.+...+...|++++|+.
T Consensus 277 ~~~~~~~~~--~~~~--~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 277 PAGLEDSNE--LDEE--TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred hhhhhcccc--cccc--cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 111111000 1111 111111111 234688999999987753 2 45678888899999999999999
Q ss_pred HHHHHhhhhCCCcCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006076 275 LFREMIMESHDLCPN-SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353 (662)
Q Consensus 275 ~~~~m~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 353 (662)
.|++. .. ..|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+
T Consensus 353 ~~~ka--l~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 353 DLSKS--IE--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHH--HH--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99987 32 3455 5577778888889999999999999998874 44578889999999999999999999998763
Q ss_pred --C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCCh--
Q 006076 354 --R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV-- 427 (662)
Q Consensus 354 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 427 (662)
| +...|..+...+.+.|++++|+..|++.... .| +...+..+..++...|++++|...|+...+. .|+.
T Consensus 428 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~ 502 (615)
T TIGR00990 428 LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKP 502 (615)
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCcccc
Confidence 3 5667888899999999999999999999874 45 4578888889999999999999999998753 3321
Q ss_pred ------HHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076 428 ------EHYACMVDLLGRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499 (662)
Q Consensus 428 ------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (662)
..++.....+...|++++|.+++++. .+.|+ ...+..+...+...|++++|...++++.++.+.....
T Consensus 503 ~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~---- 578 (615)
T TIGR00990 503 MYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL---- 578 (615)
T ss_pred ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH----
Confidence 11222233444579999999999986 55564 4578899999999999999999999999987753322
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 006076 500 ADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.....+.+|.++.....+
T Consensus 579 ----~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 579 ----VQAISYAEATRTQIQVQE 596 (615)
T ss_pred ----HHHHHHHHHHHHHHHHHH
Confidence 122345566666544443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.5e-14 Score=159.44 Aligned_cols=424 Identities=11% Similarity=0.048 Sum_probs=290.1
Q ss_pred HHHhCCCchHHHHHHh--cCCCCCH--hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHH
Q 006076 58 SLCKQGNLRQALDVLS--IEPNPTQ--HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD 133 (662)
Q Consensus 58 ~~~~~g~~~~A~~~~~--~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 133 (662)
...++|+++.|++.|+ ....|+. ..+ .++..+...|+.++|...++..... -.........+...|...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 4467888888888888 3334443 233 6777777788888888888887721 12222333334567778889999
Q ss_pred HHHHHhcCCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHH
Q 006076 134 ARHVFDKTRRR---TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210 (662)
Q Consensus 134 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~ 210 (662)
|.++|+++.+. +...+..++..+...++.++|++.++++... .|+...+..+...+...+. ..++.+.+
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~----dp~~~~~l~layL~~~~~~----~~~AL~~~ 192 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER----DPTVQNYMTLSYLNRATDR----NYDALQAS 192 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc----CcchHHHHHHHHHHHhcch----HHHHHHHH
Confidence 99988887653 4556677778888888889999888888754 5565555333323222333 54588888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC-CHhHHHH----HHHHHHH---------cCC---hhHHH
Q 006076 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSA----MIACYAR---------NGM---AFEAL 273 (662)
Q Consensus 211 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~----li~~~~~---------~g~---~~~A~ 273 (662)
+.+++.. +.+...+..++....+.|-...|.++..+-+.- +...+.- -+.-.++ .++ .+.|+
T Consensus 193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 8888875 666777788888888888888888887765521 1111000 0111111 112 24455
Q ss_pred HHHHHHhhhhCCCcCCH-HH----HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 006076 274 ELFREMIMESHDLCPNS-VT----MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348 (662)
Q Consensus 274 ~~~~~m~~~~~~~~p~~-~t----~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 348 (662)
.-++.+. ...+-.|.. .- ..--+-++...++..++.+.++.+...+.+....+-.++.++|...+++++|+.+|
T Consensus 272 a~~~~l~-~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 272 ADYQNLL-TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHH-hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 5555553 112222322 22 22345567788889999999999988887766778888999999999999999999
Q ss_pred hhCCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CC--CHh-HHHHHHHHHhcCC
Q 006076 349 DHMDKR---------DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV-----------SP--SPI-SFVSVLGACSHAG 405 (662)
Q Consensus 349 ~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~~-t~~~ll~a~~~~g 405 (662)
.++..+ +......|.-+|...+++++|..+++++.+.-. .| |-. .+..+...+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 887431 233356788888899999999999999887311 12 222 2334456678889
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006076 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASK 483 (662)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 483 (662)
++.+|.+.++.+.... +-|......+.+.+...|.+.+|++.++.. ...| +..+......+....+++++|..+.+
T Consensus 431 dl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 431 DLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999987543 558888889999999999999999998766 3455 44556677777888899999999999
Q ss_pred HHHhcCCCCcch
Q 006076 484 RLFELEPTNAGN 495 (662)
Q Consensus 484 ~~~~~~p~~~~~ 495 (662)
.+.+..|+++.+
T Consensus 509 ~l~~~~Pe~~~~ 520 (822)
T PRK14574 509 DVISRSPEDIPS 520 (822)
T ss_pred HHHhhCCCchhH
Confidence 999999987643
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=5.4e-15 Score=162.73 Aligned_cols=325 Identities=11% Similarity=-0.026 Sum_probs=262.7
Q ss_pred hHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-CHhHHHHHHH
Q 006076 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--K-NVVSWSAMIA 261 (662)
Q Consensus 185 t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~ 261 (662)
....++..+.+.|+ .+.|..++...+... +.+......++......|++++|...|+++.. | +...|..+..
T Consensus 44 ~~~~~~~~~~~~g~----~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~ 118 (656)
T PRK15174 44 NIILFAIACLRKDE----TDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVAS 118 (656)
T ss_pred CHHHHHHHHHhcCC----cchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45556667777888 999999999988875 33455556666777789999999999999853 3 5678889999
Q ss_pred HHHHcCChhHHHHHHHHHhhhhCCCcC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006076 262 CYARNGMAFEALELFREMIMESHDLCP-NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340 (662)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 340 (662)
.+.+.|++++|+..|++. .. +.| +...+..+...+...|++++|...++.+......+ ...+..+. .+...|+
T Consensus 119 ~l~~~g~~~~Ai~~l~~A--l~--l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~~-~l~~~g~ 192 (656)
T PRK15174 119 VLLKSKQYATVADLAEQA--WL--AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATCL-SFLNKSR 192 (656)
T ss_pred HHHHcCCHHHHHHHHHHH--HH--hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHHH-HHHHcCC
Confidence 999999999999999988 33 334 45677778888999999999999999887765433 33333333 4788999
Q ss_pred hHHHHHHHhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHH----HHH
Q 006076 341 LELGQCVFDHMDKR----DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE----GKM 412 (662)
Q Consensus 341 ~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~ 412 (662)
+++|...++.+.+. +...+..+...+...|++++|+..|+++.... +.+...+..+..++...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 99999999987642 33345556778899999999999999999853 2345677778889999999986 899
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490 (662)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (662)
.|+...+.. +.+...+..+...+.+.|++++|...+++. ...| +...+..+..++...|++++|...++++.+.+|
T Consensus 272 ~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 272 HWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 999987542 346788999999999999999999999987 3455 456778888999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
+++..+..++.++...|++++|...++...+..
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 987777778899999999999999999887654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=4.5e-14 Score=155.78 Aligned_cols=428 Identities=13% Similarity=0.066 Sum_probs=310.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHH-H--HHHHHh
Q 006076 82 TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNA-L--FRALTL 158 (662)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~-l--i~~~~~ 158 (662)
.|...+. ..+.|++..|...+.+..+......+.++ .++..+...|+.++|+..+++...++...+.. + ...|..
T Consensus 37 ~y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 37 QYDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 3544444 45789999999999999987532223355 88899999999999999999988764444433 3 446777
Q ss_pred cCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 006076 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238 (662)
Q Consensus 159 ~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 238 (662)
.|++++|+++|+++.+.. +-+...+..+...+...+. .++|.+.+..+.+. .|+...+..++..+...++.
T Consensus 115 ~gdyd~Aiely~kaL~~d---P~n~~~l~gLa~~y~~~~q----~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD---PTNPDLISGMIMTQADAGR----GGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred cCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHhhcCC----HHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 899999999999999762 2234455566677777777 99999999888776 45555565566666556777
Q ss_pred HHHHHHHHcCCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHH------HHHHHHH-----HccC
Q 006076 239 MYAGFVFSQMAV--K-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM------VSVLQAC-----AALA 304 (662)
Q Consensus 239 ~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~------~~ll~a~-----~~~~ 304 (662)
.+|...++++.+ | +...+..+..+..+.|-...|+++..+- . .-+.|...-. ...+.-- ....
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~--p-~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN--P-NLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC--c-cccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 679999999864 3 5667788889999999999999887744 1 1111111111 1111100 0112
Q ss_pred CH---HHHHHHHHHHHHh-CCCCc-hh-HHHHH---HHHHHhcCChHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCC
Q 006076 305 AL---EQGKMIHGYILRR-GLDSI-LP-VVSAL---VTMYARCGKLELGQCVFDHMDKRD----VVSWNSLISSYGVHGY 371 (662)
Q Consensus 305 ~~---~~a~~~~~~~~~~-g~~~~-~~-~~~~l---i~~y~~~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~ 371 (662)
++ +.|..-++.+... +-.|. .. ...+. +-++.+.|++.++++.|+.++.+. ..+--++.++|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 23 3344444444432 22232 12 23333 345678899999999999998432 2355678899999999
Q ss_pred hHHHHHHHHHHHHcC-----CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCC----------CCC---hHHHHHH
Q 006076 372 GGKAIQIFKEMIYHG-----VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI----------RPS---VEHYACM 433 (662)
Q Consensus 372 ~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l 433 (662)
+++|+.+|+++.... ..++......|..|+...+++++|..+++.+.+.... .|+ ...+..+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 999999999997643 1223334578899999999999999999999752210 122 2345667
Q ss_pred HHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHH
Q 006076 434 VDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511 (662)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (662)
+..+...|++.+|++.++++ ...| |...+..+...+...|.+.+|+..++.+..++|++..+...++..+...|+|++
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHH
Confidence 88899999999999999998 2334 888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 006076 512 VKRVKRLLEARG 523 (662)
Q Consensus 512 A~~~~~~m~~~~ 523 (662)
|.++.+.+.+..
T Consensus 503 A~~~~~~l~~~~ 514 (822)
T PRK14574 503 MELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHhhC
Confidence 999998876643
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=9.4e-13 Score=126.70 Aligned_cols=301 Identities=14% Similarity=0.140 Sum_probs=224.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhh--cCCC-------------------------hHH
Q 006076 81 HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS--HFDS-------------------------VDD 133 (662)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~--~~g~-------------------------~~~ 133 (662)
.+=+.|++. ...|.+.++--+++.|...|.+.++.+-..|+..-+ .... -+-
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 344555553 456889999999999999988777776665554322 1111 112
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHH
Q 006076 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213 (662)
Q Consensus 134 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~ 213 (662)
|. ++-+...+...++..||.|+++--..+.|.++|++-... ..+.+..+||.++.+.+ +..++.+..+|
T Consensus 196 Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~--k~kv~~~aFN~lI~~~S--------~~~~K~Lv~EM 264 (625)
T KOG4422|consen 196 AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA--KGKVYREAFNGLIGASS--------YSVGKKLVAEM 264 (625)
T ss_pred HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh--hheeeHHhhhhhhhHHH--------hhccHHHHHHH
Confidence 33 333344456789999999999999999999999999988 78899999999998754 55668999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHc----C----CCCCHhHHHHHHHHHHHcCChhH-HHHHHHHHhh--h
Q 006076 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ----M----AVKNVVSWSAMIACYARNGMAFE-ALELFREMIM--E 282 (662)
Q Consensus 214 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~----~----~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~--~ 282 (662)
+...+.||..|+|+++....+.|+++.|.+.+-+ | .+|...+|..+|..+.+.+++.+ |..++.++.. .
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 9999999999999999999999999887765544 4 26889999999999999988755 4444444421 2
Q ss_pred hCCCcC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006076 283 SHDLCP----NSVTMVSVLQACAALAALEQGKMIHGYILRRG----LDSI---LPVVSALVTMYARCGKLELGQCVFDHM 351 (662)
Q Consensus 283 ~~~~~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m 351 (662)
...++| |..-|.+.++.|.++.+.+.|.+++....... +.|+ .+-|..+.+..+....++.-.+.++.|
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222333 45678889999999999999999998775321 2232 345667888888888889989999988
Q ss_pred CC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 006076 352 DK----RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393 (662)
Q Consensus 352 ~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (662)
.. |+..+-..++.+....|.++-.-+++.+|...|..-+...
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 63 6667777778888888888888888888887764444333
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.67 E-value=5.5e-13 Score=140.91 Aligned_cols=456 Identities=13% Similarity=0.097 Sum_probs=285.9
Q ss_pred hHHHHHHHHhCCCchHHHHHHhc------CCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH--HHHHHH
Q 006076 52 KNELIQSLCKQGNLRQALDVLSI------EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL--VTKLIN 123 (662)
Q Consensus 52 ~~~li~~~~~~g~~~~A~~~~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~ 123 (662)
-|.|.+-|.-.|+++.++.+... ....-..+|-.+.+++-..|+++.|...+-...+.. ++.++ +--|.+
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhH
Confidence 34466666666777777666651 111123446666667777777777777776665543 33333 334567
Q ss_pred HhhcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcC----CccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhC
Q 006076 124 VYSHFDSVDDARHVFDKTRRR---TIYVWNALFRALTLAG----RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196 (662)
Q Consensus 124 ~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~ 196 (662)
+|.+.|+++.+...|+.+... +..+--.|...|+..+ ..+.|..++.+..+. .+.|...|..+-..+-..
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ---TPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHhc
Confidence 777777777777777665543 2334444444454443 335555555555443 233444444444443332
Q ss_pred CCCccchHHHHHHHH----HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC-------CH------hHHHHH
Q 006076 197 SCGFSLLKHGKEIHA----SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-------NV------VSWSAM 259 (662)
Q Consensus 197 ~~~~~~~~~a~~~~~----~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------~~------~~~~~l 259 (662)
. .......+. .+...+-.+.+.+.|.+...+...|+++.|...|++.... |. .+-..+
T Consensus 428 d-----~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 428 D-----PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred C-----hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 2 222233332 3334454566677777777777778888777777665321 21 122234
Q ss_pred HHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006076 260 IACYARNGMAFEALELFREMIMESHDLCPNSVT-MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338 (662)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 338 (662)
...+-..++.+.|.+.|..+. .. .|+-++ |..++......+...+|...+..+.... ..++.+++-+.+.|.+.
T Consensus 503 arl~E~l~~~~~A~e~Yk~Il--ke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSIL--KE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHH--HH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhh
Confidence 445555667777777777773 22 244332 3333322233456677777777776653 44566777777788888
Q ss_pred CChHHHHHHHhhCC-----CCChhHHHHHHHHHHh------------cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076 339 GKLELGQCVFDHMD-----KRDVVSWNSLISSYGV------------HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401 (662)
Q Consensus 339 g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (662)
..+..|.+-|..+. .+|..+.-+|.+.|.+ .+..++|+++|.+.++.. +-|...-+.+.-.+
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVL 656 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhh
Confidence 88888887555543 2455555555554432 345778999998888742 33556677777788
Q ss_pred hcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCCHHH
Q 006076 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL----RIEPGPKVWGSLLGSCRIHCNVEL 477 (662)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~ 477 (662)
+..|++.+|..+|..+.+.. .....+|-.+...|..+|++-.|+++|+.. .-+.+..+...|..++...|.+.+
T Consensus 657 A~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 89999999999999997643 345678888999999999999999999875 224477788889999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHH-------------------HHHhcCChHHHHHHHHHHHhCCCc
Q 006076 478 AERASKRLFELEPTNAGNYVLLAD-------------------VYAAADMWDEVKRVKRLLEARGLQ 525 (662)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~-------------------~~~~~g~~~~A~~~~~~m~~~~~~ 525 (662)
|.+.+..+..+.|.++..-..++- .....+..++|.++|..|...+-+
T Consensus 735 ak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 735 AKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999988765444333 233445678888999988876543
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.67 E-value=6.1e-13 Score=140.54 Aligned_cols=433 Identities=12% Similarity=0.044 Sum_probs=287.8
Q ss_pred CCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHhhcCCChHHHHHHHhcCCCC---C-cchHH
Q 006076 77 NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ--DPFLVTKLINVYSHFDSVDDARHVFDKTRRR---T-IYVWN 150 (662)
Q Consensus 77 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~-~~~~~ 150 (662)
+-|+...+.|...+.-.|+++.+..+...++.....- -...|=.+.++|-..|++++|...|-+..+. + +..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 3455566666666666777777777777666543111 1123445667777777777777777554432 2 34455
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006076 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID 230 (662)
Q Consensus 151 ~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 230 (662)
.|...|.+.|+.+.+...|+..... .+-+..|...+-..|+..+......+.|..+....++.- +.|...|-.+..
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~---~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQ---LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHh---CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 5667777777777777777777654 223334444444444444322222566666666655543 456666666666
Q ss_pred HHHhcCCHH------HHHHHHHc-CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhh-hCCCcCCH-----H-HHHHH
Q 006076 231 MYARFGCVM------YAGFVFSQ-MAVKNVVSWSAMIACYARNGMAFEALELFREMIME-SHDLCPNS-----V-TMVSV 296 (662)
Q Consensus 231 ~y~~~g~~~------~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~p~~-----~-t~~~l 296 (662)
+|-...-+. .|..++.. +....+...|.+..-+...|.+++|...|...... .....+|. . +--.+
T Consensus 423 l~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 423 LLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 665543322 23322222 12345677888888888889999999888877311 00122333 1 22223
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-------CChHHHHHHHhhCC---CCChhHHHHHHHHH
Q 006076 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC-------GKLELGQCVFDHMD---KRDVVSWNSLISSY 366 (662)
Q Consensus 297 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-------g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 366 (662)
....-..++.+.|.+.+..+++.. | ..|++|.+. +...+|...+.... ..|+..|+-+...|
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh--p------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH--P------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC--c------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 333456678888889998888763 2 244555444 56678888888765 35677788788788
Q ss_pred HhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhcC------------CCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 006076 367 GVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHA------------GLVEEGKMLFESMRKEHMIRPSVEHYACM 433 (662)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 433 (662)
.....+..|.+-|....+.- ..+|..+..+|.+.|... +..++|+++|..+.+.. +.|...-|-+
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGI 652 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGI 652 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccch
Confidence 88888888888776665532 236777777777765432 45678899998887543 5588888999
Q ss_pred HHHHhhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHhcCCh
Q 006076 434 VDLLGRANKLEEAAKIIEDLR--IEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL--EPTNAGNYVLLADVYAAADMW 509 (662)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~ 509 (662)
.-.++..|++.+|.++|.+.. ......+|-.+...|...|++..|.+.|+..+.. ..+++.....|+.++.+.|++
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 999999999999999999883 2235568999999999999999999999998763 244677888999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 006076 510 DEVKRVKRLLEARG 523 (662)
Q Consensus 510 ~~A~~~~~~m~~~~ 523 (662)
.+|.+.........
T Consensus 733 ~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 733 QEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999888776543
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=2e-13 Score=131.95 Aligned_cols=410 Identities=12% Similarity=0.113 Sum_probs=274.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHH-HHHHHHhhcCCChHHHHHHHhc----CCCCC----cchHHHHHHH
Q 006076 85 LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV-TKLINVYSHFDSVDDARHVFDK----TRRRT----IYVWNALFRA 155 (662)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~----~~~~~----~~~~~~li~~ 155 (662)
.|..-|.......+|...++-+++...-|+.-.. -.+.+.|.+...+.+|++.++. .|.-+ +...|.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3444555566677888888888887766665432 3455778888899999988753 33222 2345555567
Q ss_pred HHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCc------------hh
Q 006076 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI------------VH 223 (662)
Q Consensus 156 ~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~------------~~ 223 (662)
+.+.|+++.|+.-|+...+. .|+-.+-..++-.+...++ -++.++.|..++.....+| ..
T Consensus 286 fiq~gqy~dainsfdh~m~~----~pn~~a~~nl~i~~f~i~d----~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE----APNFIAALNLIICAFAIGD----AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred EEecccchhhHhhHHHHHHh----CccHHhhhhhhhhheecCc----HHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 88899999999999988765 6776655445544555567 8888888888876533222 22
Q ss_pred HHHHHH-----HHHHhcCC--HHHH----HHHHHcCCCCCHh---HHH------------------HHHHHHHHcCChhH
Q 006076 224 IMTTLI-----DMYARFGC--VMYA----GFVFSQMAVKNVV---SWS------------------AMIACYARNGMAFE 271 (662)
Q Consensus 224 ~~~~li-----~~y~~~g~--~~~A----~~~f~~~~~~~~~---~~~------------------~li~~~~~~g~~~~ 271 (662)
..|--| .-.-+... -+++ .++..-+..||-. -|. .-..-|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 222111 11111111 1111 1222222223211 011 11234788999999
Q ss_pred HHHHHHHHhhhhCCCcCCH--HHHHHHHHHH----------------------------------HccCCHHHHHHHHHH
Q 006076 272 ALELFREMIMESHDLCPNS--VTMVSVLQAC----------------------------------AALAALEQGKMIHGY 315 (662)
Q Consensus 272 A~~~~~~m~~~~~~~~p~~--~t~~~ll~a~----------------------------------~~~~~~~~a~~~~~~ 315 (662)
|+++++-. ....-+.-. .+-.+++.-. ...|+++.|...+.+
T Consensus 438 aieilkv~--~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 438 AIEILKVF--EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHH--HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 98888776 322211111 1111111111 134677888888887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 006076 316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI 392 (662)
Q Consensus 316 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 392 (662)
++...-......|| +.-.+-+.|++++|.+.|-.+. ..++...-.+.+.|-...+..+|++++.+.... ++.|+.
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ 593 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPA 593 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHH
Confidence 77654333333333 3335677889999988887654 456666777788888888889999988776653 444567
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHH-H
Q 006076 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSC-R 470 (662)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~ 470 (662)
.+..|...|-+.|+-.+|.+.+-.--+ + ++.+.++..-|..-|....-+++|+.+|++. -++|+.+-|..|+..| +
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyr-y-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYR-Y-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhccc-c-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 777888889999999999988776542 2 5778999999999999999999999999988 4789999999999877 5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076 471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508 (662)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (662)
+.|++..|..+++.+...-|.|..+..-|+.++...|.
T Consensus 672 rsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 67999999999999999999999999999999888874
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=6.6e-11 Score=119.94 Aligned_cols=461 Identities=12% Similarity=0.052 Sum_probs=310.0
Q ss_pred HHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHH----HHhCCCCChhHHHHHHHHhhc
Q 006076 55 LIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL----TDNGFDQDPFLVTKLINVYSH 127 (662)
Q Consensus 55 li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~~ 127 (662)
|..+|++..-|+.|..++. ..++-+...|.+....--..|+.+....+...- ...|+..+..-|-.=...+-+
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 4555566666666666665 455556666666555555566666555555433 234555555555544455555
Q ss_pred CCChHHHHHHHhcCCC-----C-CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCcc
Q 006076 128 FDSVDDARHVFDKTRR-----R-TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS 201 (662)
Q Consensus 128 ~g~~~~A~~~f~~~~~-----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~ 201 (662)
.|..-.+..+...... . --.+|+.-...|.+.+.++-|..+|...++. .+-+...+......=-..|.
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~slWlra~~~ek~hgt--- 565 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV---FPCKKSLWLRAAMFEKSHGT--- 565 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcCc---
Confidence 5555555554443321 1 2246777777777777777777777777654 22233333333333233344
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006076 202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFRE 278 (662)
Q Consensus 202 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (662)
.+....+++.++..- +-....|-....-+-..|++..|+.++.+.-+ .+...|-+-+..-..+..+++|..+|.+
T Consensus 566 -~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 566 -RESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred -HHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 677777777776653 34455566666666777888888877776543 2556677777777888888888888886
Q ss_pred HhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-C
Q 006076 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-D 355 (662)
Q Consensus 279 m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~ 355 (662)
. +. ..|+...|.--...---+++.++|.+++++.++. ++.-...|-.+...+-+.++++.|.+.|..-.+ | .
T Consensus 644 a--r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 644 A--RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred H--hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 6 33 4466666655555555677788888888777765 333455677777778888888888887776554 4 3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435 (662)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 435 (662)
+..|-.|...--+.|...+|..++++.+..+ +-|...|...+..-.+.|+.+.|..+.....++ .+.+...|..-|.
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIW 795 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHH
Confidence 4467777777777778888888888877653 335677788888888888888888888777765 3556777877788
Q ss_pred HHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHH
Q 006076 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515 (662)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (662)
+..+.++-..+.+.+++.. .|+.+..++...+-...+++.|..-|++.+..+|++..++..+-..+.+.|.-++-.++
T Consensus 796 le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev 873 (913)
T KOG0495|consen 796 LEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV 873 (913)
T ss_pred hccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 8877777666666666653 46666667777778888999999999999999999999999999999999999998888
Q ss_pred HHHHHhCCCcCCCceeEEEE
Q 006076 516 KRLLEARGLQKVPGRSRIEV 535 (662)
Q Consensus 516 ~~~m~~~~~~~~~~~s~~~~ 535 (662)
+....... |..|..|..+
T Consensus 874 ~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 874 LKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHhccC--CCCCcHHHHH
Confidence 88766432 3445666643
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=9.2e-11 Score=113.25 Aligned_cols=357 Identities=12% Similarity=0.076 Sum_probs=215.6
Q ss_pred HHhcCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCC----CCCc
Q 006076 71 VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR----RRTI 146 (662)
Q Consensus 71 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~ 146 (662)
++-...+.+..||..++.+.++-...+.|++++.+..+...+.+..++|.+|.+-+-..+ .++..+|. .||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 333344556677777777777777777777777777666666777777777765543322 33443333 4677
Q ss_pred chHHHHHHHHHhcCCcc----HHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchH-HHHHHHHHHHH----hC
Q 006076 147 YVWNALFRALTLAGRGE----EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK-HGKEIHASVLR----HG 217 (662)
Q Consensus 147 ~~~~~li~~~~~~g~~~----~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~-~a~~~~~~~~~----~g 217 (662)
.|+|+++++.++.|+++ .|++++.+|++- |+.|.-.+|..+|....+.++ .. .+..+...+.. ..
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKei--GVePsLsSyh~iik~f~re~d----p~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEI--GVEPSLSSYHLIIKNFKRESD----PQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh--CCCcchhhHHHHHHHhcccCC----chhhhHHHHHHHHHhhccCc
Confidence 78888888777777664 456777888888 888888888888887777666 32 23333333322 12
Q ss_pred CC----CchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC-----------CHhHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q 006076 218 YN----GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-----------NVVSWSAMIACYARNGMAFEALELFREMIME 282 (662)
Q Consensus 218 ~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 282 (662)
+. .|...+.+-++.+.+..+.+-|.++-.-.... ...-|..+....++....+.-+..|+.| .
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l--V 425 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL--V 425 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence 22 24455566677777777887777765544321 1234667777888888899999999999 6
Q ss_pred hCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHH
Q 006076 283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL 362 (662)
Q Consensus 283 ~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 362 (662)
-.-+-|+..+...+++|....+.++-..+++..++..|.........-+...+++.. ..|+...-.-+
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql 493 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQL 493 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHH
Confidence 666778999999999999999999999999998888774333222222222222211 02322211111
Q ss_pred HHHHHh--cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHH---HHHHHH
Q 006076 363 ISSYGV--HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA---CMVDLL 437 (662)
Q Consensus 363 i~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~li~~~ 437 (662)
-..+++ ..-.+.....-.+|.+..+.| ...+.++.-+.+.|..++|.++|..+.++..--|.....+ -+++.-
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 111111 001111122223444443433 3444555556677777777777777754433334333444 444455
Q ss_pred hhcCCHHHHHHHHHhc
Q 006076 438 GRANKLEEAAKIIEDL 453 (662)
Q Consensus 438 ~~~g~~~~A~~~~~~m 453 (662)
.+.+....|...++-|
T Consensus 572 ~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLA 587 (625)
T ss_pred HhcCCHHHHHHHHHHH
Confidence 5666777777776665
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=2.7e-14 Score=141.63 Aligned_cols=255 Identities=15% Similarity=0.115 Sum_probs=113.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006076 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ-ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337 (662)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 337 (662)
+...+.+.|++++|++++.+- .....+|+...|..++. .+...++.+.|.+.++.+...+.. ++..+..++.. ..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~--~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKA--AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 345566777777777777543 22221354444444333 344567778888888777766533 55567777776 68
Q ss_pred cCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076 338 CGKLELGQCVFDHMD--KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLF 414 (662)
Q Consensus 338 ~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (662)
.+++++|.+++...- .++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|.+.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 899999998887663 3567778888899999999999999999987533 3456677888888899999999999999
Q ss_pred HHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076 415 ESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDLR--IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 415 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (662)
+...+. .| |......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...+++.....|+
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999864 45 58889999999999999999888887762 2456778899999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 492 NAGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
|+.....+++++...|+.++|.+++++.-
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988654
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.53 E-value=4e-10 Score=118.95 Aligned_cols=470 Identities=9% Similarity=-0.013 Sum_probs=288.0
Q ss_pred CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHhcCCChHHHHHHH
Q 006076 27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNSLSDALNVH 103 (662)
Q Consensus 27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 103 (662)
+.++|.+++ .++...|+...- +|-+|-..|-+.|+.++++..+- --.+-|..-|..+-.-..+.|++.+|+-.+
T Consensus 154 ~~eeA~~i~-~EvIkqdp~~~~--ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 154 DLEEAEEIL-MEVIKQDPRNPI--AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CHHHHHHHH-HHHHHhCccchh--hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999 888888876554 49999999999999999998776 333446678888888888999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCc----chHHH----HHHHHHhcCCccHHHHHHHHHhhC
Q 006076 104 SHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI----YVWNA----LFRALTLAGRGEEVLELYRRMNGT 175 (662)
Q Consensus 104 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~----~~~~~----li~~~~~~g~~~~A~~l~~~m~~~ 175 (662)
.++++.. +++....-.-..+|-+.|+...|..-|.++.+.++ .-.-. .+..|...++-+.|++.+......
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999975 34444444567889999999999988887765433 11222 344566666668888888877663
Q ss_pred CCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHh---------------------------CCCCchhH-HHH
Q 006076 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH---------------------------GYNGIVHI-MTT 227 (662)
Q Consensus 176 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~ 227 (662)
+ +-..+..+++.+...+..... .+.+.......... ++.++..+ ...
T Consensus 310 ~-~~~~~~ed~ni~ael~l~~~q----~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 310 E-KDEASLEDLNILAELFLKNKQ----SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred c-cccccccHHHHHHHHHHHhHH----HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 1 223334445555555555444 66655555444431 12223233 111
Q ss_pred HHHHHHhcCCHHHHHHHHHcCC----CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHcc
Q 006076 228 LIDMYARFGCVMYAGFVFSQMA----VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL 303 (662)
Q Consensus 228 li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~ 303 (662)
+--...+.+...++..-|-.-. ..++..|..+..+|.+.|++.+|+.+|..+ .....--+...|..+...+-..
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i--~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI--TNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH--hcCccccchhhhHHHHHHHHHH
Confidence 1122223344444444332221 224556778888899999999999999888 4443334567787888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCh------------hHHHHHHHHHHhcCC
Q 006076 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV------------VSWNSLISSYGVHGY 371 (662)
Q Consensus 304 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~------------~~~~~li~~~~~~g~ 371 (662)
|..++|.+.++.++... +.+..+--+|-..|-+.|+.++|.+++..+..||. ..--.....|.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 99999999998888764 33455666777888889999999999988775552 112223455667777
Q ss_pred hHHHHHHHHHHHHcCC-----CC-----------------CHhHHHHHHHHHhcCCCHHHHHHHHH-----HhHHhcCCC
Q 006076 372 GGKAIQIFKEMIYHGV-----SP-----------------SPISFVSVLGACSHAGLVEEGKMLFE-----SMRKEHMIR 424 (662)
Q Consensus 372 ~~~A~~~~~~m~~~g~-----~p-----------------~~~t~~~ll~a~~~~g~~~~a~~~~~-----~~~~~~~~~ 424 (662)
.++=+..-..|+..+. -| ...+.-.+..+-.+.++.....+... ......++.
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 7765555544443211 01 11122222223333322111111110 001111222
Q ss_pred CC--hHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C
Q 006076 425 PS--VEHYACMVDLLGRANKLEEAAKIIEDLR-----IEPGP---KVWGSLLGSCRIHCNVELAERASKRLFEL-----E 489 (662)
Q Consensus 425 ~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~ 489 (662)
-+ -..+.-++..+++.+++++|+.+...+- ..++. ..=...+.++...+++..|....+.++.. +
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~ 701 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLD 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhh
Confidence 22 1355666777788888888887776651 12222 11234455566677788877777777654 4
Q ss_pred CCCcchHHHHHHHHHhcCC
Q 006076 490 PTNAGNYVLLADVYAAADM 508 (662)
Q Consensus 490 p~~~~~~~~l~~~~~~~g~ 508 (662)
|--...|++..+...+.|+
T Consensus 702 ~~q~~l~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 702 VYQLNLWNLDFSYFSKYGQ 720 (895)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4444455544444444443
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.1e-09 Score=107.15 Aligned_cols=429 Identities=14% Similarity=0.139 Sum_probs=310.0
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHH
Q 006076 116 FLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192 (662)
Q Consensus 116 ~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~ 192 (662)
..|-.-.+.=...+++..|+.+|+.... +++..|--.+..=.++.++..|..++++.... --..|..=|-.+. .
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y-m 150 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY-M 150 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH-H
Confidence 3333333333345677888999987654 57788888888889999999999999988765 2222333222211 1
Q ss_pred HHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCHhHHHHHHHHHHHcCChh
Q 006076 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA--VKNVVSWSAMIACYARNGMAF 270 (662)
Q Consensus 193 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~ 270 (662)
=-.+|+ +..|+++|..-.. ..|+...|++.|+.=.+-..++.|..++++.. .|++.+|--...-=.++|...
T Consensus 151 EE~LgN----i~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 151 EEMLGN----IAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHhcc----cHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHH
Confidence 123455 9999999998775 48999999999999999999999999999864 789999988888888999999
Q ss_pred HHHHHHHHHhhhhCC-CcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHH
Q 006076 271 EALELFREMIMESHD-LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS-ILPVVSALVTMYARCGKLELGQCVF 348 (662)
Q Consensus 271 ~A~~~~~~m~~~~~~-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 348 (662)
.|..+|.... ...| -.-+...|++...-=.+...++.|+-++..+++.=... ....|..+...--+-|+-...+++.
T Consensus 225 ~aR~VyerAi-e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 225 LARSVYERAI-EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 9999998774 2222 11122334443333346778899999999998863222 2556666666666677765555432
Q ss_pred --------hhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHH---hcCCCH
Q 006076 349 --------DHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-------ISFVSVLGAC---SHAGLV 407 (662)
Q Consensus 349 --------~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~ 407 (662)
+.+.+ -|-.+|--.+..-...|+.+...++|++.... ++|-. ..|..+=-+| ....++
T Consensus 304 v~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 22222 25568888888888889999999999999875 56632 2233332233 357899
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHH----hhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006076 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLL----GRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERAS 482 (662)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 482 (662)
+.+.++++...+ -++....++..+--+| .++.++..|.+++... +.-|...++...|..-.+.++++....++
T Consensus 383 ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 383 ERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999875 2566667776666555 4788999999999876 77899999999999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHH
Q 006076 483 KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN 561 (662)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (662)
++.++.+|.+..++.-.+..=...|+++.|..+|.....+.....|..-|-.. -.|-.....+.....+|+.+.+
T Consensus 461 Ekfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY----IdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 461 EKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY----IDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh----hhhhhhcchHHHHHHHHHHHHH
Confidence 99999999999999999988899999999999999988877655666655311 0133334445556666665544
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=1.4e-08 Score=103.46 Aligned_cols=488 Identities=11% Similarity=0.009 Sum_probs=329.4
Q ss_pred hhhhccCC----CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhc---CCCCCHhhHHHHHHHHh
Q 006076 19 TNSIAHLP----PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSI---EPNPTQHTYELLLLSCT 91 (662)
Q Consensus 19 ~~li~~y~----~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~p~~~~~~~ll~~~~ 91 (662)
|+++.-+. +...|+.++ ....+.|+..+.. |-+-...--..|++..|..+... ..+.+...|.-.+
T Consensus 254 ~sm~p~~~~dl~DikKaR~ll-KSvretnP~hp~g--WIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai---- 326 (913)
T KOG0495|consen 254 NSMIPTSGGDLEDIKKARLLL-KSVRETNPKHPPG--WIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI---- 326 (913)
T ss_pred HhcCCCccCcHHHHHHHHHHH-HHHHhcCCCCCch--HHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----
Confidence 44555555 777899999 8888888876666 64444445567888888887762 2333333332222
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH---------------------------hhcCCChHHHHHHHhcCCCC
Q 006076 92 HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV---------------------------YSHFDSVDDARHVFDKTRRR 144 (662)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---------------------------y~~~g~~~~A~~~f~~~~~~ 144 (662)
+....+.|+.+....++.- +.++..|-.-.+. -......++|+-++.+..+-
T Consensus 327 RLhp~d~aK~vvA~Avr~~-P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvec 405 (913)
T KOG0495|consen 327 RLHPPDVAKTVVANAVRFL-PTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVEC 405 (913)
T ss_pred hcCChHHHHHHHHHHHHhC-CCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHh
Confidence 2333444555555554431 1122222111111 11122333344444332220
Q ss_pred CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHH----HHhCCCC
Q 006076 145 TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV----LRHGYNG 220 (662)
Q Consensus 145 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~----~~~g~~~ 220 (662)
- .+-.-|.-+|++..-++.|..++++.++. ++-+...+.+....=-..|. .+....+...- ...|+..
T Consensus 406 c-p~s~dLwlAlarLetYenAkkvLNkaRe~---iptd~~IWitaa~LEE~ngn----~~mv~kii~rgl~~L~~ngv~i 477 (913)
T KOG0495|consen 406 C-PQSMDLWLALARLETYENAKKVLNKAREI---IPTDREIWITAAKLEEANGN----VDMVEKIIDRGLSELQANGVEI 477 (913)
T ss_pred c-cchHHHHHHHHHHHHHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHhhcceee
Confidence 0 01112233455566677777777777764 55566555544443334444 66666666543 3346666
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHcCC-----CC-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcC-CHHHH
Q 006076 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMA-----VK-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP-NSVTM 293 (662)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~-----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~t~ 293 (662)
+...|-.=...+-+.|.+-.+..+..... +. --.+|+.-...|.+.+.++-|..+|... . .+-| +...|
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a--l--qvfp~k~slW 553 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA--L--QVFPCKKSLW 553 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH--H--hhccchhHHH
Confidence 66666666666666677666666665543 11 2357888888888888888898888866 2 2334 44555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcC
Q 006076 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-DVVSWNSLISSYGVHG 370 (662)
Q Consensus 294 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g 370 (662)
......--..|..+.-..+++.++..- +-....+-....-+...|++..|+.++.+.-+ | +...|-+-+.....+.
T Consensus 554 lra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~ 632 (913)
T KOG0495|consen 554 LRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFEND 632 (913)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccc
Confidence 555555566788889999999888764 33445566666777788999999999887753 3 5568989999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 006076 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450 (662)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 450 (662)
.++.|..+|.+... ..|+...|.--+..---.++.++|.+++++..+.+ +.-...|-.+...+-+.++++.|.+.|
T Consensus 633 e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 633 ELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred cHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999877 56777777776666677899999999999998764 445678888899999999999999988
Q ss_pred Hhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCC
Q 006076 451 EDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528 (662)
Q Consensus 451 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 528 (662)
..- ..-| ....|-.|...--+.|++-.|..++++..-.+|.+...|...+.+=.+.|+.+.|..+..+..+.- +..
T Consensus 709 ~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~s 786 (913)
T KOG0495|consen 709 LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSS 786 (913)
T ss_pred HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--Ccc
Confidence 765 3344 567898888888888999999999999999999999999999999999999999998887766532 344
Q ss_pred ceeEE
Q 006076 529 GRSRI 533 (662)
Q Consensus 529 ~~s~~ 533 (662)
|.-|.
T Consensus 787 g~LWa 791 (913)
T KOG0495|consen 787 GLLWA 791 (913)
T ss_pred chhHH
Confidence 55664
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.3e-11 Score=125.98 Aligned_cols=276 Identities=12% Similarity=0.011 Sum_probs=215.0
Q ss_pred CHHHHHHHHHcCCCC--CH-hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006076 237 CVMYAGFVFSQMAVK--NV-VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313 (662)
Q Consensus 237 ~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 313 (662)
+..+|...|...++. |+ .....+..+|...+++++|.++|+.......-..-+..+|.++|-.+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467899999886642 33 34456788999999999999999988422222333677888888665331 222222
Q ss_pred HH-HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006076 314 GY-ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR---DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389 (662)
Q Consensus 314 ~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 389 (662)
.+ +++. -+..+.+|.++.++|.-+++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 22 2222 2456889999999999999999999999988753 557888888888999999999999998865 445
Q ss_pred CH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHH
Q 006076 390 SP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSL 465 (662)
Q Consensus 390 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 465 (662)
.. ..|-.+...|.+.++++.|.-.|+.+.+ +.| +......+...+-+.|+.++|++++++. .+.| |+..---.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 44 4666778899999999999999999875 445 6677788889999999999999999988 3343 44444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
...+...++.++|+..++++.++-|++...|..++.+|-+.|+.+.|..-|.-+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 566677899999999999999999999999999999999999999999888776653
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=5.8e-09 Score=102.32 Aligned_cols=478 Identities=13% Similarity=0.080 Sum_probs=339.3
Q ss_pred CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh----cCCCCCHhhHHHHHHHHhcCCChHHHHHH
Q 006076 27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNV 102 (662)
Q Consensus 27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 102 (662)
.+..|+.+| +....-|.... -.|---+..=.++.....|..+++ ..++.|..=| .-+-.--..|++..|+++
T Consensus 88 e~~RARSv~-ERALdvd~r~i--tLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 88 EIQRARSVF-ERALDVDYRNI--TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHH-HHHHhcccccc--hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 567799999 77776554332 236667888889999999999998 2233343322 222233456899999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcC--CCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCC
Q 006076 103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT--RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180 (662)
Q Consensus 103 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~ 180 (662)
|+.-.+ .+|+...|++.|++=.+...++.|+.++++. ..|++.+|--...-=.+.|+...|..+|....+. -
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~----~ 237 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF----L 237 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----h
Confidence 998876 5899999999999999999999999999875 4688899988888888899999999999987764 2
Q ss_pred CChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHH--------HcCCC
Q 006076 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI--VHIMTTLIDMYARFGCVMYAGFVF--------SQMAV 250 (662)
Q Consensus 181 p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f--------~~~~~ 250 (662)
.|...-..++.+++.-......++.|.-++...+..= +.+ ...|..+...=-+.|+........ +.+..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 2333344455555543333333777888888777652 333 456666666656667655444332 22222
Q ss_pred C---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH-------HHHHHHHHHH---HccCCHHHHHHHHHHHH
Q 006076 251 K---NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS-------VTMVSVLQAC---AALAALEQGKMIHGYIL 317 (662)
Q Consensus 251 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-------~t~~~ll~a~---~~~~~~~~a~~~~~~~~ 317 (662)
. |-.+|-..+..--..|+.+...++|++. -.+++|-. ..|.-+=-+| ....+.+.++++++..+
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErA---Ianvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERA---IANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHH---HccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2 5567777888778889999999999987 24566632 2233322232 35678999999999998
Q ss_pred HhCCCCchhHHHHHHHHHH----hcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C
Q 006076 318 RRGLDSILPVVSALVTMYA----RCGKLELGQCVFDHMD--KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-S 390 (662)
Q Consensus 318 ~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~ 390 (662)
+. ++...+++..+=-+|+ ++.++..|.+++.... -|-..++..-|..-.+.++++....+|.+.++- .| |
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~ 470 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPEN 470 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHh
Confidence 83 5556777777666665 5789999999998775 377788888888888999999999999999984 45 5
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 006076 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSC 469 (662)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 469 (662)
..+|.....--...|+.+.|+.+|+.......+..-...|.+.|+.=...|.++.|..+++++ ...+...+|-++..--
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe 550 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFE 550 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHh
Confidence 578887777778899999999999998865433334567888888888999999999999988 3345566787766433
Q ss_pred H-----hcC-----------CHHHHHHHHHHHHh----cCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 470 R-----IHC-----------NVELAERASKRLFE----LEPTN--AGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 470 ~-----~~g-----------~~~~a~~~~~~~~~----~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
. ..+ +...|..+|+++.. .+|.. .......-++=...|...+...+-++|++
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 2 223 56778888888764 23321 12233344444566777777777777754
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=1.2e-10 Score=120.94 Aligned_cols=274 Identities=14% Similarity=0.075 Sum_probs=189.1
Q ss_pred cCCHHHHHHHHHcCCCC--C-HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHH--HHHHHHHccCCHHHH
Q 006076 235 FGCVMYAGFVFSQMAVK--N-VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV--SVLQACAALAALEQG 309 (662)
Q Consensus 235 ~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~--~ll~a~~~~~~~~~a 309 (662)
.|+++.|++.....++. + ...|-.......+.|+++.|.+.|.++ .. ..|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A--~~--~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERA--AE--LADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH--Hh--cCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 58888888888776543 1 233333334447788888888888877 33 345543333 224556778888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCh-----------hHHHHHHHHHHhcCChHHHHHH
Q 006076 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV-----------VSWNSLISSYGVHGYGGKAIQI 378 (662)
Q Consensus 310 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~ 378 (662)
...++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888887775 44577788888888888888888888887764211 1333334433444455555566
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC
Q 006076 379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP 457 (662)
Q Consensus 379 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 457 (662)
++.+-+. .+.+......+..++...|+.++|.++++...+. +|+.... ++.+....++.+++++..++. +..|
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 6655332 3446667778888888889999999888888652 4555322 233333558888888888877 3345
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 458 -GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 458 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
|+....++...|...+++++|...|+++.+.+|++ ..|..|+.++.+.|+.++|.+++++-.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45567788888889999999999999999988874 567788899999999999988887653
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.45 E-value=5.8e-10 Score=117.74 Aligned_cols=327 Identities=13% Similarity=0.082 Sum_probs=249.3
Q ss_pred CCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHc---CCCCCHhHHHHHHHHHHHcCChhHHH
Q 006076 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ---MAVKNVVSWSAMIACYARNGMAFEAL 273 (662)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 273 (662)
|+ +++|..++.++++.. +.....|.+|...|-..|+.+++...+-. +...|..-|-.+..-..+.|.+++|.
T Consensus 153 g~----~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 153 GD----LEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred CC----HHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 77 999999999999986 66788999999999999999999887644 34557889999999999999999999
Q ss_pred HHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCChHHHHHHHh
Q 006076 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA----LVTMYARCGKLELGQCVFD 349 (662)
Q Consensus 274 ~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~~~ 349 (662)
-.|.+. .+.. +++...+.--...|-+.|+...|..-+.++.....+.|..-.-. .+..|...++-+.|.+.++
T Consensus 228 ~cy~rA--I~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 228 YCYSRA--IQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHH--HhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999988 3332 34555555566778899999999999999988765444443333 3455666777788888888
Q ss_pred hCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH----------------------H----HHH
Q 006076 350 HMDK-----RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF----------------------V----SVL 398 (662)
Q Consensus 350 ~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----------------------~----~ll 398 (662)
.... -+...++.++..|.....++.|......+......+|..-+ . -+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 7653 24457888899999999999999998888773222222111 1 112
Q ss_pred HHHhcCCCHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHhhcCCHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcC
Q 006076 399 GACSHAGLVEEGKMLFESMRKEHMI--RPSVEHYACMVDLLGRANKLEEAAKIIEDLRI---EPGPKVWGSLLGSCRIHC 473 (662)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p~~~~~~~ll~~~~~~g 473 (662)
-++.+....+....+..... ...+ .-++..|.-+.++|...|++.+|+.+|..+.. -.+...|--+...|...|
T Consensus 385 icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 22333343333333344443 3333 33678899999999999999999999998831 235778999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeE
Q 006076 474 NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532 (662)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 532 (662)
..++|.+.+++++.+.|++..+-..|+.+|.+.|+.++|.+++..|..-+-...+++.|
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999999887444334456666
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=2.9e-10 Score=118.17 Aligned_cols=286 Identities=11% Similarity=0.009 Sum_probs=178.3
Q ss_pred cCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcC
Q 006076 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM--TTLIDMYARFG 236 (662)
Q Consensus 159 ~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~y~~~g 236 (662)
.|++++|.+.+....+. .-.| ...|.....+....++ .+.+.+.+..+.+. .|+.... ......+...|
T Consensus 97 eGd~~~A~k~l~~~~~~--~~~p-~l~~llaA~aA~~~g~----~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH--AEQP-VVNYLLAAEAAQQRGD----EARANQHLERAAEL--ADNDQLPVEITRVRIQLARN 167 (398)
T ss_pred CCCHHHHHHHHHHHHhc--ccch-HHHHHHHHHHHHHCCC----HHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCC
Confidence 46777776666554332 1111 1122222233344555 66666666666543 3333222 23355666677
Q ss_pred CHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006076 237 CVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH 313 (662)
Q Consensus 237 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 313 (662)
+++.|...++++.+ .++.....+...|.+.|++++|++++..+ ...+..+ ......+-
T Consensus 168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l--~k~~~~~-~~~~~~l~---------------- 228 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSM--AKAHVGD-EEHRAMLE---------------- 228 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHcCCCC-HHHHHHHH----------------
Confidence 77777777766643 24556666677777777777777777777 4433221 11111000
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006076 314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390 (662)
Q Consensus 314 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 390 (662)
..+|..++....+..+.+...++++.+++ .++.....+...+...|+.++|.+++++..+. .||
T Consensus 229 -----------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~ 295 (398)
T PRK10747 229 -----------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYD 295 (398)
T ss_pred -----------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 01222233333334455666666666653 46677788888888888888888888888773 444
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 006076 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSC 469 (662)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 469 (662)
... .++.+....++.+++.+..+...+.+ +-|+..+.++...+.+.|++++|.+.|+.. ...|+...+..+...+
T Consensus 296 ~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~ 371 (398)
T PRK10747 296 ERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADAL 371 (398)
T ss_pred HHH--HHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 421 23334445688888888888887653 456777888888889999999999888887 5678888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcC
Q 006076 470 RIHCNVELAERASKRLFELE 489 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~ 489 (662)
...|+.++|...+++.+.+-
T Consensus 372 ~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 372 DRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHcCCHHHHHHHHHHHHhhh
Confidence 88999999998888887643
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=3.1e-11 Score=123.32 Aligned_cols=266 Identities=18% Similarity=0.153 Sum_probs=205.7
Q ss_pred CChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHH-
Q 006076 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG--LDSILPVVSALVTMYARCGKLEL- 343 (662)
Q Consensus 267 g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~- 343 (662)
-+..+|+..|... ... +.-.......+..+|-.++++++++.+|+.+.+.. ...+..+|.+.+--+-+.-.+.-
T Consensus 333 y~~~~A~~~~~kl--p~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 333 YNCREALNLFEKL--PSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHhh--HHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 3567888888876 222 22234667778889999999999999999998763 12357788877765543322222
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcC
Q 006076 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422 (662)
Q Consensus 344 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 422 (662)
|..+.+ +..-.+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+...
T Consensus 410 aq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---- 482 (638)
T KOG1126|consen 410 AQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---- 482 (638)
T ss_pred HHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----
Confidence 222222 3345678999999999999999999999999988 677 56888888888888889999999998775
Q ss_pred CCCChHHHHH---HHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 006076 423 IRPSVEHYAC---MVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497 (662)
Q Consensus 423 ~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (662)
..|+.+|++ |.-.|.|.++++.|+-.|++. .+.| +.+....+...+.+.|+.++|+++++++.-++|.|+-.-.
T Consensus 483 -~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 483 -GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred -cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 456666665 566799999999999999988 5666 5667777888889999999999999999999999999989
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHHHC
Q 006076 498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569 (662)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~ 569 (662)
..+.++...+++++|.+.++++++- -|+-.-++..+..+.++|...
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~--------------------------vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL--------------------------VPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh--------------------------CcchHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999862 144455566666777776543
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=2e-10 Score=111.47 Aligned_cols=413 Identities=12% Similarity=0.062 Sum_probs=244.0
Q ss_pred HHHHHHhCCCchHHHHHHh----cCCCCCHh----hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhh
Q 006076 55 LIQSLCKQGNLRQALDVLS----IEPNPTQH----TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS 126 (662)
Q Consensus 55 li~~~~~~g~~~~A~~~~~----~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 126 (662)
+-..+.+...+.+|+.+|+ .-+..+.. ..+.+-..+.+.|.++.|..-|++..+. .|+..+.-.|+-++.
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF 320 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe
Confidence 4456677777777777776 11112222 2333334456777777777777777664 466666555666666
Q ss_pred cCCChHHHHHHHhcCCC----------------CCcchHHH-----HHHHHHhcC--CccHHHHHHHHHhhCCCCCCCCh
Q 006076 127 HFDSVDDARHVFDKTRR----------------RTIYVWNA-----LFRALTLAG--RGEEVLELYRRMNGTGTGIRSDR 183 (662)
Q Consensus 127 ~~g~~~~A~~~f~~~~~----------------~~~~~~~~-----li~~~~~~g--~~~~A~~l~~~m~~~~~g~~p~~ 183 (662)
--|+-++..+.|.+|.. |+....|. .+.-.-+.+ +.++++-.-.++... -+.||-
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiap--vi~~~f 398 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAP--VIAPDF 398 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcc--ccccch
Confidence 66777777777765531 11111221 112121111 112222222222221 233331
Q ss_pred hh-------------HH--------HHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHH
Q 006076 184 FT-------------YT--------YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR--FGCVMY 240 (662)
Q Consensus 184 ~t-------------~~--------~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~ 240 (662)
.. +. .-...+.+.++ ++.|.+++..+.+..-..-....|.|-..+.- -.++.+
T Consensus 399 a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d----~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~ 474 (840)
T KOG2003|consen 399 AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD----IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFAD 474 (840)
T ss_pred hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC----HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhH
Confidence 10 00 00113456777 88888888777765433333444444444333 235667
Q ss_pred HHHHHHcCCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006076 241 AGFVFSQMAVK---NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317 (662)
Q Consensus 241 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 317 (662)
|...-+....- +....+.-...-..+|++++|.+.|++. ....-.-....|+. --.+-.+|++++|...|-.+.
T Consensus 475 aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea--l~ndasc~ealfni-glt~e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 475 AQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA--LNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred HHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH--HcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHH
Confidence 77666655432 2222222222334578888888888877 32221111222222 223556788888887776553
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH
Q 006076 318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394 (662)
Q Consensus 318 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 394 (662)
.. +..+..+...+.+.|-...+...|.+++.+... .|+....-|...|-+.|+-.+|.+.+-+--.- ++.|..|.
T Consensus 552 ~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~i 629 (840)
T KOG2003|consen 552 AI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETI 629 (840)
T ss_pred HH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHH
Confidence 32 223566777777888888888888888877653 46777888888888888888888876654442 56677788
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH-hhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHh
Q 006076 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL-GRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRI 471 (662)
Q Consensus 395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~ 471 (662)
..|...|....-+++++.+|+... -+.|+..-|..||..| .|.|++++|.++++.. +++.|.....-|+..|..
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 888888888888888999988774 2688888888887554 5778999999998887 455677777778887777
Q ss_pred cCCHHHHHHHHHH
Q 006076 472 HCNVELAERASKR 484 (662)
Q Consensus 472 ~g~~~~a~~~~~~ 484 (662)
.|- .++.+..++
T Consensus 707 lgl-~d~key~~k 718 (840)
T KOG2003|consen 707 LGL-KDAKEYADK 718 (840)
T ss_pred ccc-hhHHHHHHH
Confidence 664 334444333
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=9.9e-10 Score=114.81 Aligned_cols=274 Identities=10% Similarity=-0.045 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHcCCC--CC--HhHHHHHHHHHHHcCChhHHHHHHH
Q 006076 203 LKHGKEIHASVLRHGYNGI-VHIMTTLIDMYARFGCVMYAGFVFSQMAV--KN--VVSWSAMIACYARNGMAFEALELFR 277 (662)
Q Consensus 203 ~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~ 277 (662)
++.|++......+.. |+ ...+-.....+.+.|+.+.|.+.|.+..+ |+ ....-+....+.+.|+++.|++.++
T Consensus 100 ~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 100 YAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred HHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666555442 22 22223334555666777777766666421 22 2222233555666677777777766
Q ss_pred HHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHH-------HHHHHHhcCChHHHHHHHhh
Q 006076 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA-------LVTMYARCGKLELGQCVFDH 350 (662)
Q Consensus 278 ~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-------li~~y~~~g~~~~A~~~~~~ 350 (662)
.+ .... +-+...+..+...+...|+++.+.+.+..+.+.+..+....... +++.-......+...+.++.
T Consensus 178 ~l--~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 178 KL--LEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HH--HHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 66 3332 12344555566666666777777666666666654322221111 11111111222333344444
Q ss_pred CCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH---HHHHHHHhcCCCHHHHHHHHHHhHHhcCCC
Q 006076 351 MDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF---VSVLGACSHAGLVEEGKMLFESMRKEHMIR 424 (662)
Q Consensus 351 m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 424 (662)
.++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+.. +
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p 330 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--D 330 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--C
Confidence 432 25556666666666666666666666666653 2333210 111111122344555555555444332 1
Q ss_pred CCh--HHHHHHHHHHhhcCCHHHHHHHHHh--c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076 425 PSV--EHYACMVDLLGRANKLEEAAKIIED--L-RIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485 (662)
Q Consensus 425 ~~~--~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 485 (662)
-|+ ....++...+.+.|++++|.+.|+. . ...|+...+..+...+...|+.++|.+++++.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122 3344455555555555555555552 1 23445544445555555555555555555544
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=7.1e-09 Score=101.65 Aligned_cols=255 Identities=14% Similarity=0.095 Sum_probs=191.5
Q ss_pred HHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHh
Q 006076 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYAR 337 (662)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~ 337 (662)
..++-...+.++++.-.... ...|+.-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++-.--.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l--~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERL--SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 34455555667777766666 5566544444444444445567788888888888887732 1246666666533322
Q ss_pred cCChHH-HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHH
Q 006076 338 CGKLEL-GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLFE 415 (662)
Q Consensus 338 ~g~~~~-A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 415 (662)
+.++.- |..++ .+.+--+.|...+.+-|+-.++.++|...|++.++ +.|.. ..|+.+..-|....+...|.+-++
T Consensus 312 ~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 222222 22222 23333445666677788888999999999999988 45554 567778888999999999999999
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493 (662)
Q Consensus 416 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (662)
..++.. +.|-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|+..|++++..+-.+.
T Consensus 389 rAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 389 RAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 998632 448889999999999999999999999988 4566 789999999999999999999999999999887777
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 494 GNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.+|..|+++|-+.++.++|.+.+++-.+
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8999999999999999999999988765
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=8e-09 Score=101.29 Aligned_cols=238 Identities=14% Similarity=0.150 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC------CHhHHHHHHHHHHHcCChhHHHHHH
Q 006076 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK------NVVSWSAMIACYARNGMAFEALELF 276 (662)
Q Consensus 203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 276 (662)
.+++.+=.......|++.+...-+-...++-...++|+|+.+|+++... |..+|+.++ |+++.+. .+.++
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s--kLs~L 318 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS--KLSYL 318 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH--HHHHH
Confidence 4444444444444555444444443334444445555555555555432 333444433 2222211 11111
Q ss_pred HHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---
Q 006076 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--- 353 (662)
Q Consensus 277 ~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--- 353 (662)
.+-...-...+| .|...+.+-|+-.++.++|...|+++++.+ +....+|+.+.+-|....+...|.+-++...+
T Consensus 319 A~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 319 AQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred HHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 111001112222 233333444444444555555555554443 12334444444444444444444444443332
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 006076 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432 (662)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 432 (662)
.|-..|-.|.++|...+...=|+-.|++... ++| |...|.+|...|.+.++.++|++.|.....-. ..+...+..
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--dte~~~l~~ 471 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--DTEGSALVR 471 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--ccchHHHHH
Confidence 3444444444455444444444444444444 233 23444444444444455555554444443211 122344444
Q ss_pred HHHHHhhcCCHHHHHHHHH
Q 006076 433 MVDLLGRANKLEEAAKIIE 451 (662)
Q Consensus 433 li~~~~~~g~~~~A~~~~~ 451 (662)
|.++|-+.++.++|...|+
T Consensus 472 LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 4444444444444444443
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=4.9e-09 Score=103.33 Aligned_cols=213 Identities=16% Similarity=0.139 Sum_probs=171.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 006076 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQI 378 (662)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 378 (662)
-.|+.-.+..-++.+++....++ ..|--+..+|....+-++..+.|+...+ .|..+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 35777788888888887754332 3366667788999999999999987763 4666777777777788899999999
Q ss_pred HHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC
Q 006076 379 FKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE 456 (662)
Q Consensus 379 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 456 (662)
|++.+. +.|+. ..|..+--+..+.+.++++...|+...++ ++..+++|+.....+.-.++++.|.+.|+.. .++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988 56654 67777777778899999999999999875 5778999999999999999999999999876 444
Q ss_pred CC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 457 PG---------PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 457 p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
|+ +.+-.+++-.-- .+++..|..+++++++++|....+|..|+.+-.+.|++++|+++|++-.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44 222222332222 3899999999999999999999999999999999999999999999754
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.35 E-value=6.4e-12 Score=124.61 Aligned_cols=253 Identities=16% Similarity=0.096 Sum_probs=72.3
Q ss_pred HHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHH-HHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006076 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK-ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY 232 (662)
Q Consensus 154 ~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~-~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 232 (662)
..+.+.|++++|++++++-... ..+|+...|-.++. .+...++ .+.|.+.++.+++.+ +.+...+..++..
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~--~~~~~~~~~~~~~a~La~~~~~----~~~A~~ay~~l~~~~-~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQK--IAPPDDPEYWRLLADLAWSLGD----YDEAIEAYEKLLASD-KANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc--cccccccccccccccccccccc----ccccccccccccccc-ccccccccccccc-
Confidence 3444555555555555433322 11233333332222 1222333 555555555555443 2234444455555
Q ss_pred HhcCCHHHHHHHHHcCC--CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHH
Q 006076 233 ARFGCVMYAGFVFSQMA--VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310 (662)
Q Consensus 233 ~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (662)
...+++++|.+++...- .++...+..++..+.+.++++++.+++.... .....+++...|......+.+.|+.++|.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLE-ELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHH-H-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666665542 2345556666666677777777777776652 12223344455555555556666666666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006076 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387 (662)
Q Consensus 311 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 387 (662)
..++.+++.. +.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+..|++.....
T Consensus 167 ~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 167 RDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 6666666653 2235555556666666666665555544433 2344555556666666666666666666655531
Q ss_pred CCCHhHHHHHHHHHhcCCCHHHHHHHHHHh
Q 006076 388 SPSPISFVSVLGACSHAGLVEEGKMLFESM 417 (662)
Q Consensus 388 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 417 (662)
+.|..+...+..++...|+.++|.++....
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 224445555555556666666665555444
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=3.1e-09 Score=111.68 Aligned_cols=105 Identities=20% Similarity=0.161 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCcchHHHH
Q 006076 428 EHYACMVDLLGRANKLEEAAKIIEDLR-----IEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL---EPTNAGNYVLL 499 (662)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l 499 (662)
..|..||+.+....++++|..+.++.. +.-|..-+..+.....+++....+..+++++.+. .|.......-+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 568899999999999999999999884 2335556778888889999999998888887652 34334555667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEE
Q 006076 500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI 533 (662)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 533 (662)
.+.-...|+.+...++++-+...|+.. .+--|.
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence 777788999999999999999888865 344443
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.33 E-value=1.7e-09 Score=113.14 Aligned_cols=282 Identities=11% Similarity=-0.017 Sum_probs=197.8
Q ss_pred hcCCccHHHHHHHHHhhCCCCCCCChhh-HHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006076 158 LAGRGEEVLELYRRMNGTGTGIRSDRFT-YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236 (662)
Q Consensus 158 ~~g~~~~A~~l~~~m~~~~~g~~p~~~t-~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 236 (662)
..|+++.|.+.+.+..+. .|+... +-..-.+....++ .+.+.+.+..+.+..-.+...+.-.....+...|
T Consensus 96 ~~g~~~~A~~~l~~~~~~----~~~~~~~~llaA~aa~~~g~----~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH----AAEPVLNLIKAAEAAQQRGD----EARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 468899999888876654 454333 3333455566677 8999999988876542222334555678888899
Q ss_pred CHHHHHHHHHcCCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHH-HHHHHH---HccCCHHHH
Q 006076 237 CVMYAGFVFSQMAV--K-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV-SVLQAC---AALAALEQG 309 (662)
Q Consensus 237 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~-~ll~a~---~~~~~~~~a 309 (662)
+++.|...++.+.+ | +...+..+...|.+.|++++|.+++... .+.++. +...+. .-..+. ...+..+.+
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l--~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNM--AKAGLF-DDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999988863 3 6677888999999999999999999998 655543 222221 111111 222222333
Q ss_pred HHHHHHHHHhCC---CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChhH---HHHHHHHHHhcCChHHHHHHHHH
Q 006076 310 KMIHGYILRRGL---DSILPVVSALVTMYARCGKLELGQCVFDHMDK--RDVVS---WNSLISSYGVHGYGGKAIQIFKE 381 (662)
Q Consensus 310 ~~~~~~~~~~g~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~---~~~li~~~~~~g~~~~A~~~~~~ 381 (662)
.+.+..+.+... +.++..+..+...+...|+.++|.+++++..+ ||... +..........++.+.+++.+++
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 334444444322 24788999999999999999999999998864 44432 12222333445788899999988
Q ss_pred HHHcCCCCCHh---HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 382 MIYHGVSPSPI---SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 382 m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
..+. .|+.. ...++...|.+.|++++|.++|+... .....|+...+..+...+.+.|+.++|.+++++.
T Consensus 325 ~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 325 QAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8773 56554 45577888999999999999999532 1235799999999999999999999999999874
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5.5e-09 Score=105.00 Aligned_cols=263 Identities=12% Similarity=0.013 Sum_probs=200.7
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006076 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331 (662)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 331 (662)
++.....-..-+...+++.+.++++.... ... +++...+..-|..+...|+...-.-+-..+++. .+....+|-++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~ll-e~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELL-EKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHH-hhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 44445555566777788888888888773 222 344444555555666777666655555555554 35567788888
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHH
Q 006076 332 VTMYARCGKLELGQCVFDHMDKRD---VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408 (662)
Q Consensus 332 i~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 408 (662)
.--|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence 888888899999999998765432 458999999999999999999999887663 2223333444555788899999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC-----C---CC-CHHHHHHHHHHHHhcCCHHHHH
Q 006076 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR-----I---EP-GPKVWGSLLGSCRIHCNVELAE 479 (662)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~---~p-~~~~~~~ll~~~~~~g~~~~a~ 479 (662)
.|.++|....... +.|+...+-+.-.....+.+.+|..+|+..- + .+ -..+|+.|..+|++.+..++|+
T Consensus 398 LAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999886432 4477788888888888899999999998651 1 11 3456888999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
..+++.+.+.|.++.+|..++-+|...|+++.|...|.+...
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987663
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=6.6e-10 Score=106.89 Aligned_cols=197 Identities=16% Similarity=0.097 Sum_probs=163.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 006076 324 ILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400 (662)
Q Consensus 324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 400 (662)
....+..+...|.+.|++++|.+.|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677788889999999999999987653 346688888899999999999999999988853 3345677778888
Q ss_pred HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006076 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELA 478 (662)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 478 (662)
+...|++++|.+.++...+....+.....+..+...+...|++++|...+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999998753322334567788889999999999999999887 3334 466788888999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
...+++..+..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998888888888999999999999999999887764
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=8.2e-12 Score=87.04 Aligned_cols=50 Identities=32% Similarity=0.561 Sum_probs=47.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 006076 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403 (662)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (662)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1.9e-08 Score=94.40 Aligned_cols=285 Identities=11% Similarity=0.077 Sum_probs=163.7
Q ss_pred cCCccHHHHHHHHHhhCCCCCCCC-hhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHh
Q 006076 159 AGRGEEVLELYRRMNGTGTGIRSD-RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG-YNGI--VHIMTTLIDMYAR 234 (662)
Q Consensus 159 ~g~~~~A~~l~~~m~~~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~y~~ 234 (662)
+.++++|.++|-+|.+. .|. ..+-.++-+.+.+.|. .+.|..+|+.+.++. ++.+ ..+.-.|..-|.+
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGE----vDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGE----VDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hcCcchHHHHHHHHHhc----CchhhHHHHHHHHHHHhcch----HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 47888888888888865 222 2233344455556666 888888888877653 1111 2344556677888
Q ss_pred cCCHHHHHHHHHcCCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHH
Q 006076 235 FGCVMYAGFVFSQMAVKN---VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311 (662)
Q Consensus 235 ~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~ 311 (662)
.|-+|.|+.+|..+.+.+ ....-.|+..|-+..+|++|++.-++. ...+-++..+-.
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L--~k~~~q~~~~eI------------------ 179 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERL--VKLGGQTYRVEI------------------ 179 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHcCCccchhHH------------------
Confidence 888888888888876633 334556777888888888888887776 444433322211
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006076 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388 (662)
Q Consensus 312 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 388 (662)
...|.-|...+....+++.|..++.+..+ ..+..=-.+...+...|++..|++.++...+++..
T Consensus 180 -------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 180 -------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred -------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 11222233333334445555555554432 12222223444566667777777777766665433
Q ss_pred CCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhcCCCCCHHHHHHHHH
Q 006076 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII-EDLRIEPGPKVWGSLLG 467 (662)
Q Consensus 389 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~ 467 (662)
--..+...|..+|.+.|+.+++...+..+.+. .+....-..+.+.-....-.+.|...+ +.+.-+|+...+..|+.
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~ 323 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMD 323 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 33345566666777777777777777666543 344444445555444444455555444 33455677777777776
Q ss_pred HHHhc---CCHHHHHHHHHHHHh
Q 006076 468 SCRIH---CNVELAERASKRLFE 487 (662)
Q Consensus 468 ~~~~~---g~~~~a~~~~~~~~~ 487 (662)
.-... |...+-...++.+.+
T Consensus 324 ~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 324 YHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred hhhccccccchhhhHHHHHHHHH
Confidence 54332 334444455555543
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=5.8e-08 Score=95.94 Aligned_cols=404 Identities=9% Similarity=0.008 Sum_probs=253.4
Q ss_pred HHHHHHHhCCCchHHHHHHh--cCCCCC-HhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHhhcCC
Q 006076 54 ELIQSLCKQGNLRQALDVLS--IEPNPT-QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD-PFLVTKLINVYSHFD 129 (662)
Q Consensus 54 ~li~~~~~~g~~~~A~~~~~--~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g 129 (662)
+.-.-|.++|++++|+..|. -...|| +.-|.....+|...|+++.+.+--...++. .|+ +..+..-..++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhc
Confidence 34456778999999999998 556777 666777778888889999888877777664 333 234555556677778
Q ss_pred ChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcc--------HHHHHHHH-HhhCCCCCCCChhhHHHHHHHHHhCCCCc
Q 006076 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE--------EVLELYRR-MNGTGTGIRSDRFTYTYVLKACVASSCGF 200 (662)
Q Consensus 130 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~l~~~-m~~~~~g~~p~~~t~~~ll~~~~~~~~~~ 200 (662)
++++|+.=. |-..+..++..+.-.- .|..-..+ |.+.++.+-|......+.+..+-....
T Consensus 198 ~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~-- 266 (606)
T KOG0547|consen 198 KFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK-- 266 (606)
T ss_pred cHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc--
Confidence 777775311 2222222222221111 12222222 222222455665555555444322110
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CCHHHHHHHHHc-------CCCCC---------HhHHHHHHHHH
Q 006076 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF-GCVMYAGFVFSQ-------MAVKN---------VVSWSAMIACY 263 (662)
Q Consensus 201 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~-------~~~~~---------~~~~~~li~~~ 263 (662)
..+...+-..|...-..+=..|.+. ..+..|...+.+ ....+ ..+.+.-..-+
T Consensus 267 ----------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 267 ----------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred ----------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 0000000011222222222222211 123333333221 11111 22222223335
Q ss_pred HHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 006076 264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL 343 (662)
Q Consensus 264 ~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 343 (662)
.-.|+.-.|...|+.. ....-.++. .|.-+..+|....+.++..+.|..+.+.+. .++.+|..=..++.-.+++++
T Consensus 337 fL~g~~~~a~~d~~~~--I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAA--IKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhcCCchhhhhhHHHH--HhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHH
Confidence 5678889999999887 333322222 266677778999999999999999988763 356677777788888899999
Q ss_pred HHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHh
Q 006076 344 GQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420 (662)
Q Consensus 344 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 420 (662)
|..=|++... .++..|--+..+..+.+++++++..|++..+. ++--...|+.....+...++++.|.+.|+...+
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 9999998774 35667777777778889999999999999876 565667888899999999999999999998864
Q ss_pred cCCCCC---------hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076 421 HMIRPS---------VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELE 489 (662)
Q Consensus 421 ~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (662)
+.|+ +.+--+++-. .-.+++..|.+++++. .+.| ....|.+|...-.+.|+.++|+++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3443 1111222221 2338999999999987 5555 46779999999999999999999999987764
No 55
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.1e-07 Score=94.25 Aligned_cols=434 Identities=12% Similarity=0.101 Sum_probs=262.1
Q ss_pred HHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHhh--c
Q 006076 55 LIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTK--LINVYS--H 127 (662)
Q Consensus 55 li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~ 127 (662)
=++-+..+|++++|+..-. ...+-|...+..-+-+..+.+.+++|..+.+ ..+. ..+++. +=.+|+ +
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 3566777889999998877 4444566667777778888899998885443 2221 112222 355665 7
Q ss_pred CCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCC-ChhhHHHHHHHHHhCCCCccchHHH
Q 006076 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS-DRFTYTYVLKACVASSCGFSLLKHG 206 (662)
Q Consensus 128 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~a 206 (662)
.+..|+|...++...+.+..+-..-...+-+.|++++|+.+|+.+.+. +..- |...-..++.+-+.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn--~~dd~d~~~r~nl~a~~a~----------- 158 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN--NSDDQDEERRANLLAVAAA----------- 158 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHh-----------
Confidence 899999999999666666656666667788999999999999999876 2221 12222222222111
Q ss_pred HHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHcC--------CCCC-----Hh-----HHHHHHHHHHHc
Q 006076 207 KEIHASVLRHGYNG--IVHIMTTLIDMYARFGCVMYAGFVFSQM--------AVKN-----VV-----SWSAMIACYARN 266 (662)
Q Consensus 207 ~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~-----~~-----~~~~li~~~~~~ 266 (662)
.+. ..+......| +-..+-...-.+...|++.+|+++++.. .+.| .. .--.|...+-..
T Consensus 159 l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred hhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 111 0122222222 1122222344567789999999999876 1111 11 122344567788
Q ss_pred CChhHHHHHHHHHhhhhCCCcCCHHHHHHH---HHHHHccCCHHH--HHHHHHHH-----------HHhCCCCchhHHHH
Q 006076 267 GMAFEALELFREMIMESHDLCPNSVTMVSV---LQACAALAALEQ--GKMIHGYI-----------LRRGLDSILPVVSA 330 (662)
Q Consensus 267 g~~~~A~~~~~~m~~~~~~~~p~~~t~~~l---l~a~~~~~~~~~--a~~~~~~~-----------~~~g~~~~~~~~~~ 330 (662)
|+.++|.+++... .... .+|......+ |.+...-.++-. ....++.. ....-...+..-+.
T Consensus 238 Gqt~ea~~iy~~~--i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 238 GQTAEASSIYVDI--IKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred cchHHHHHHHHHH--HHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 4433 3444222222 222222222111 11111110 00000112233345
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhcCC
Q 006076 331 LVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGV-HGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAG 405 (662)
Q Consensus 331 li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g 405 (662)
++.+|. +..+.+.++-...+. |....=+.+..++.. .....+|.+++...-+. .|.. ......+.-....|
T Consensus 315 lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 315 LLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcC
Confidence 666664 566778888777774 333333333333322 22467788888777664 3443 44455566677899
Q ss_pred CHHHHHHHHH--------HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--------CCCCC-HHHHHHHHHH
Q 006076 406 LVEEGKMLFE--------SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--------RIEPG-PKVWGSLLGS 468 (662)
Q Consensus 406 ~~~~a~~~~~--------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~ 468 (662)
+++.|.+++. .+.+ +...+.+..+++.+|.+.++-+-|..++.+. .-.+. ..+|.-+...
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 9999999998 4432 3345566778889999988877777776654 11221 2234444444
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006076 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519 (662)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (662)
-.++|+.++|...++++.+.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 56789999999999999999999999999999999876 566666665443
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=1.2e-08 Score=105.67 Aligned_cols=231 Identities=19% Similarity=0.224 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCChHHHHHHHhhCCC---------
Q 006076 290 SVTMVSVLQACAALAALEQGKMIHGYILRR-----GL-DSIL-PVVSALVTMYARCGKLELGQCVFDHMDK--------- 353 (662)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~--------- 353 (662)
..|...+...|...|+++.|..+++..++. |. .|.+ ...+.+...|...+++.+|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666788899999999999999888765 21 2222 2334577788999999999998887752
Q ss_pred -CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCC-CCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcC--
Q 006076 354 -RD-VVSWNSLISSYGVHGYGGKAIQIFKEMIY-----HGVS-PSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHM-- 422 (662)
Q Consensus 354 -~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 422 (662)
|. ..+++.|...|...|++++|...+++..+ .|.. |.. .-++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 22 34788888899999999998888876654 1222 222 3456677788999999999999987765432
Q ss_pred CCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhc---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 006076 423 IRPS----VEHYACMVDLLGRANKLEEAAKIIEDL---------RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFE- 487 (662)
Q Consensus 423 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 487 (662)
+.++ ..+++.|...|...|++++|.+++++. +..+. ...++.|..+|.+.++.++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 468999999999999999999999876 11222 44577888999999999999999987764
Q ss_pred ---cCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 488 ---LEPTN---AGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 488 ---~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
.+|+. ..+|..|+.+|.+.|++++|.++.....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34444 4578889999999999999999998775
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=1.2e-07 Score=91.82 Aligned_cols=276 Identities=15% Similarity=0.083 Sum_probs=150.8
Q ss_pred cCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHH
Q 006076 235 FGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311 (662)
Q Consensus 235 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~ 311 (662)
.|++..|+++..+-.+ ..+..|..-..+--+.|+.+.|-.++.+. .+..-.++.....+........|+.+.|+.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~ea--ae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEA--AELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHH--hccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4666666666655332 22333444444555566666666666655 222112333344444444556666666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC-----------hhHHHHHHHHHHhcCChHHHHHHHH
Q 006076 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD-----------VVSWNSLISSYGVHGYGGKAIQIFK 380 (662)
Q Consensus 312 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~ 380 (662)
-...+.+.+ +.++.+.......|.+.|++.....++..+.+.. ..+|+.++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 666665554 2345556666666666666666666666665421 1245555554444444444334444
Q ss_pred HHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCC
Q 006076 381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPG 458 (662)
Q Consensus 381 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~ 458 (662)
+.-.. .+-+...-.+++.-+...|+.++|.++.....+. +..|+ .. ..-...+-++.+.-++..++. ..+.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 43322 3444445555666666677777777766666543 23333 11 111222334433333333322 11223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
+..+.+|...|.+++.+.+|...++..+...|+ ...|..++++|.+.|+..+|.+++++-.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 456667777777777777777777777777775 5677777777777777777777776654
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.20 E-value=7.7e-10 Score=116.16 Aligned_cols=264 Identities=16% Similarity=0.145 Sum_probs=195.6
Q ss_pred HHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006076 274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353 (662)
Q Consensus 274 ~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 353 (662)
.++..| +..|+.||.+||.+++.-|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. +
T Consensus 11 nfla~~--e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALH--EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHHHHH--HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C
Confidence 356667 88899999999999999999999999998 9999988888888999999999999999988776 7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 006076 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433 (662)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 433 (662)
|...+|+.|..+|.++|+... ++..++ -...+...++..|....-..++..+.-..+.-||.. ..
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NA 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HH
Confidence 888999999999999999866 332222 233455567777777777777766543344455554 45
Q ss_pred HHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHH
Q 006076 434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH-CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512 (662)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (662)
+..+.-.|.++.++++...+|...-......++.-+... ..+++-...-+...+ .| ++.+|..+.+.-..+|+.+.|
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhH
Confidence 666677889999999999987321111111134444433 334444444444445 45 478999999999999999999
Q ss_pred HHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHHHCCcccCCcccc
Q 006076 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579 (662)
Q Consensus 513 ~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~ 579 (662)
..+...|+++|+...+.+.|-.+ .|....+ -++.+.+.|++.|+.|+..+..
T Consensus 224 k~ll~emke~gfpir~HyFwpLl--------~g~~~~q-------~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLL--------LGINAAQ-------VFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhh--------hcCccch-------HHHHHHHHHHHhcCCCCcchhH
Confidence 99999999999988888888743 3322222 3456889999999999987553
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=4.7e-11 Score=83.16 Aligned_cols=50 Identities=30% Similarity=0.531 Sum_probs=46.2
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc
Q 006076 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA 302 (662)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~ 302 (662)
||+++||++|.+|++.|++++|+++|++| ...|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M--~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEM--KKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999 899999999999999998874
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.19 E-value=2e-06 Score=88.13 Aligned_cols=382 Identities=13% Similarity=0.110 Sum_probs=201.2
Q ss_pred CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 006076 27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106 (662)
Q Consensus 27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 106 (662)
.+..-++.| +.....=+++-..+-|.-.+.-..+.|-++-++.+|++-.+.++..-+--+..++..+++++|.+.+...
T Consensus 117 ~iT~tR~tf-drALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~v 195 (835)
T KOG2047|consen 117 LITRTRRTF-DRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATV 195 (835)
T ss_pred hHHHHHHHH-HHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 334445555 4443333333333445557777777777877887777333333333445556666677777777666655
Q ss_pred HHhC------CCCChhHHHHHHHHhhcCCC---hHHHHHHHhcCCCC--C--cchHHHHHHHHHhcCCccHHHHHHHHHh
Q 006076 107 TDNG------FDQDPFLVTKLINVYSHFDS---VDDARHVFDKTRRR--T--IYVWNALFRALTLAGRGEEVLELYRRMN 173 (662)
Q Consensus 107 ~~~g------~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~l~~~m~ 173 (662)
+... .+.+-..|+-+-+..++.-+ --....+++.+..+ | ...|++|..-|.+.|.++.|..+|++..
T Consensus 196 ln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 196 LNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred cCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4321 12222333333333332211 11122223322222 1 1345666666666666666666655544
Q ss_pred hCCCCCCCChhhHHHHHHHHHhCC----------------C---------------------------------------
Q 006076 174 GTGTGIRSDRFTYTYVLKACVASS----------------C--------------------------------------- 198 (662)
Q Consensus 174 ~~~~g~~p~~~t~~~ll~~~~~~~----------------~--------------------------------------- 198 (662)
.. - .+..-|+.+..+|+.-. +
T Consensus 276 ~~--v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~e 351 (835)
T KOG2047|consen 276 QT--V--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEE 351 (835)
T ss_pred Hh--h--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHH
Confidence 33 1 11112222222222100 0
Q ss_pred -------CccchHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCCHHHHHHHHHcCCCCC-------HhHHHH
Q 006076 199 -------GFSLLKHGKEIHASVLRHGYNG------IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN-------VVSWSA 258 (662)
Q Consensus 199 -------~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~ 258 (662)
-.+...+-...+.++++. +.| -...|..+.+.|-..|+++.|+.+|++..+-+ ..+|..
T Consensus 352 W~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~ 430 (835)
T KOG2047|consen 352 WHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCA 430 (835)
T ss_pred HHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 011133333444444433 111 12456677888888888999999888875421 234555
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhhhCCC----------cC-------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 006076 259 MIACYARNGMAFEALELFREMIMESHDL----------CP-------NSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321 (662)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m~~~~~~~----------~p-------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 321 (662)
-...=.++.+++.|+++.++.. ...- .| +...|+..++.--..|-++..+.+++.+++..+
T Consensus 431 waemElrh~~~~~Al~lm~~A~--~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 431 WAEMELRHENFEAALKLMRRAT--HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHhhh--cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 5566667777888888777652 1110 11 112233333444456777788888888887765
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC----CChh-HHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHhH
Q 006076 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDK----RDVV-SWNSLISSYGV---HGYGGKAIQIFKEMIYHGVSPSPIS 393 (662)
Q Consensus 322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t 393 (662)
.....+. ...-.+-...-++++.+++++-.. |++. .||+-+.-+.+ .-..+.|..+|++.++ |.+|...-
T Consensus 509 aTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aK 586 (835)
T KOG2047|consen 509 ATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAK 586 (835)
T ss_pred CCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHH
Confidence 4222222 222234455667888888886542 5543 67776665554 2357888889988888 66766544
Q ss_pred HHHHHHHH--hcCCCHHHHHHHHHHhH
Q 006076 394 FVSVLGAC--SHAGLVEEGKMLFESMR 418 (662)
Q Consensus 394 ~~~ll~a~--~~~g~~~~a~~~~~~~~ 418 (662)
+.-|+-|- ..-|....|..++++..
T Consensus 587 tiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 587 TIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333332 23477778888887764
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.17 E-value=4.2e-08 Score=94.96 Aligned_cols=277 Identities=13% Similarity=0.008 Sum_probs=211.8
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC----CHhHHHHHHHHHHHcCChhHHHHHH
Q 006076 201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK----NVVSWSAMIACYARNGMAFEALELF 276 (662)
Q Consensus 201 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 276 (662)
|++..|+.+.....+.+-.| ...|..-..+--+.|+.+.|-+...+..++ +....-+........|+...|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 34999998888877776333 344445556677789999999988887543 4455667777888899999998888
Q ss_pred HHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCChHHHHHHHh
Q 006076 277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL-------PVVSALVTMYARCGKLELGQCVFD 349 (662)
Q Consensus 277 ~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~ 349 (662)
.+. ...+ +-+.........+|.+.|++.....+...+.+.|.-.+. .+++.+++-....+..+.-...++
T Consensus 177 ~~l--l~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 177 DQL--LEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHH--HHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 877 4433 234566777888999999999999999999998866553 356666665555555566566777
Q ss_pred hCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC
Q 006076 350 HMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426 (662)
Q Consensus 350 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 426 (662)
..+. .++..-.+++.-+.+.|+.++|.++..+-.+.+..|+ ...+-.+.+.++.+.-.+..+.-.+..+- +
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 7763 4566677788888999999999999999888887777 23334667788888888888777766533 4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076 427 VEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487 (662)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (662)
+..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.+.|+.++|.+..++.+-
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 578888999999999999999999876 6789999999999999999999999999888764
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=6.7e-08 Score=90.74 Aligned_cols=297 Identities=12% Similarity=0.096 Sum_probs=183.1
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC-CCH------hHHHHHHHHHHHcCChhHHHHH
Q 006076 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNV------VSWSAMIACYARNGMAFEALEL 275 (662)
Q Consensus 203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~~g~~~~A~~~ 275 (662)
.++|..+|-+|.+.. +.+..+--+|.+.|-+.|.+|.|+++-..+.+ ||. ...-.|..-|...|-++.|..+
T Consensus 51 ~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 51 PDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred cchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 455555555555532 33334444555566666666666665555432 221 1222344445555555555555
Q ss_pred HHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 006076 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355 (662)
Q Consensus 276 ~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 355 (662)
|..+ .+.+ +--......|+..|-+..++++|.++-+++.+-+
T Consensus 130 f~~L-------------------------------------~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 130 FNQL-------------------------------------VDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHH-------------------------------------hcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 5554 3322 1112233345555666666666665555443211
Q ss_pred h--------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC
Q 006076 356 V--------VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS-FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426 (662)
Q Consensus 356 ~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 426 (662)
. ..|--+...+....+.+.|..++.+..+. .|+.+- -..+.......|+++.|.+.++.+.+. +..--
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl 248 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYL 248 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHH
Confidence 1 13445566666778999999999999884 454433 334556788999999999999999754 23334
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH--
Q 006076 427 VEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY-- 503 (662)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-- 503 (662)
..+...|..+|...|+.++...++.++ ...+....-..+-.--....-.+.|...+.+-+...|+- ..+..|++.-
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~ 327 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhc
Confidence 667888999999999999999998877 444555555555555555566778888888888888874 4444455543
Q ss_pred -HhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEE
Q 006076 504 -AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSF 542 (662)
Q Consensus 504 -~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~ 542 (662)
+..|++.+...+++.|...-++..|.+.-..-+=..|+|
T Consensus 328 daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 328 DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 345779999999999988777766655444333333333
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6.5e-07 Score=86.82 Aligned_cols=304 Identities=13% Similarity=0.002 Sum_probs=207.0
Q ss_pred CCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHH
Q 006076 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258 (662)
Q Consensus 180 ~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 258 (662)
.|...+....+.+++..-.. .-..+.+.+..+... -++.|+....++.+.|...|+.++|...|++...-|+.+...
T Consensus 191 ~~~~dwls~wika~Aq~~~~--~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNF--KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhc--ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence 34444455555554443220 022333333333332 367788899999999999999999999999876544433322
Q ss_pred H---HHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006076 259 M---IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335 (662)
Q Consensus 259 l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 335 (662)
| .-.+.+.|+.+....+...+. ... .-...-|..-+...-..++++.|..+-+..++.. +.+...+-.-...+
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf--~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL 344 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLF--AKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLL 344 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHH--hhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHH
Confidence 2 223457788887777776662 111 1122222222333345667788887777777654 22344444445567
Q ss_pred HhcCChHHHHHHHhhCC--C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH-HHHhc-CCCHHHH
Q 006076 336 ARCGKLELGQCVFDHMD--K-RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL-GACSH-AGLVEEG 410 (662)
Q Consensus 336 ~~~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a 410 (662)
...|+.++|.-.|+... . -+..+|.-|+..|...|.+.+|..+-++.... ++.+..+.+.+. ..|.. ..--++|
T Consensus 345 ~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence 77899999999998765 3 47889999999999999999999888776653 344556665552 33332 3345788
Q ss_pred HHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076 411 KMLFESMRKEHMIRPS-VEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488 (662)
Q Consensus 411 ~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (662)
..+++...+ +.|+ ....+.+...+...|+.+++..++++. ...||...-+.|...++..+.+.+|...|..++.+
T Consensus 424 Kkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 424 KKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 888887764 4564 556778888999999999999999886 56789999999999999999999999999999999
Q ss_pred CCCCc
Q 006076 489 EPTNA 493 (662)
Q Consensus 489 ~p~~~ 493 (662)
+|++.
T Consensus 501 dP~~~ 505 (564)
T KOG1174|consen 501 DPKSK 505 (564)
T ss_pred Cccch
Confidence 99874
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.10 E-value=4.6e-08 Score=93.98 Aligned_cols=199 Identities=15% Similarity=0.085 Sum_probs=100.6
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006076 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332 (662)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 332 (662)
...+..+...|...|++++|.+.+++. .... +.+...+..+...+...|++++|.+.++...+.. +
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~--l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~---------- 96 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKA--LEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P---------- 96 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH--HHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C----------
Confidence 345666666666667777777666665 2221 1123344444444555555555555555554432 1
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHH
Q 006076 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGK 411 (662)
Q Consensus 333 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 411 (662)
.+...+..+...|...|++++|.+.|++.......| ....+..+..++...|++++|.
T Consensus 97 ---------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 97 ---------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred ---------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 222344444444555555555555555554421111 1233444444555556666666
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488 (662)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (662)
..++...+.. +.+...+..+...+...|++++|...+++. .. +++...+..+...+...|+.+.|....+.+.+.
T Consensus 156 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6665554321 223445555566666666666666665554 11 223444445555555666666666665555443
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.07 E-value=4.7e-08 Score=106.29 Aligned_cols=260 Identities=15% Similarity=0.051 Sum_probs=183.6
Q ss_pred CHhHHHHHHHHHHH-----cCChhHHHHHHHHHhhhhCCCcCCH-HHHHHHHHHHH---------ccCCHHHHHHHHHHH
Q 006076 252 NVVSWSAMIACYAR-----NGMAFEALELFREMIMESHDLCPNS-VTMVSVLQACA---------ALAALEQGKMIHGYI 316 (662)
Q Consensus 252 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~p~~-~t~~~ll~a~~---------~~~~~~~a~~~~~~~ 316 (662)
+...|...+.+-.. .+..++|+.+|++. . ...|+. ..+..+..++. ..+++++|...++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~A--l--~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQC--V--NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHH--H--hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 45566666665322 12357899999977 3 334554 34444433332 234578999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-
Q 006076 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI- 392 (662)
Q Consensus 317 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 392 (662)
++.. +.+...+..+...+...|++++|...|++..+ | +...|..+...|...|++++|+..+++..+ +.|+..
T Consensus 331 l~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~ 407 (553)
T PRK12370 331 TELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAA 407 (553)
T ss_pred HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChh
Confidence 8875 34677888888999999999999999998763 4 456788899999999999999999999998 456543
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHH
Q 006076 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGP-KVWGSLLGSC 469 (662)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~ 469 (662)
.+..++..+...|++++|...+++..+.. +| ++..+..+...|...|+.++|...+.++ +..|+. ..++.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 33344555667899999999999886542 34 4556788889999999999999999987 344544 3455555666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
...| +.|...++++++..-..+..+..+...|.-.|+-+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7666 4788878877753322222223366677778888887777 7777654
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=3.3e-08 Score=98.35 Aligned_cols=211 Identities=16% Similarity=0.085 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 006076 305 ALEQGKMIHGYILRRG-LDSI--LPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQI 378 (662)
Q Consensus 305 ~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 378 (662)
..+.+..-+.+++... ..|+ ...+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455666666666432 2222 45677788889999999999999987753 3567899999999999999999999
Q ss_pred HHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CC
Q 006076 379 FKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RI 455 (662)
Q Consensus 379 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~ 455 (662)
|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+.+. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999988 5665 467777888888999999999999998754 454332222233345677899999999664 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLF-------ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 456 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
.|+...| .......|+...+ ..++.+. ++.|+.+.+|..|+.+|.+.|++++|...|++....++
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3333222 2222334555444 2444443 34566677899999999999999999999998886543
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=7.5e-07 Score=93.21 Aligned_cols=409 Identities=14% Similarity=0.075 Sum_probs=254.6
Q ss_pred CCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChh-h
Q 006076 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR---TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF-T 185 (662)
Q Consensus 110 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~-t 185 (662)
.+..|+.+|..|.-+..++|+++.+-+.|++...- ....|+.+-..|...|.-..|+.+++.-... .-.|+.. .
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~--~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK--SEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc--ccCCCcchH
Confidence 46778999999999999999999999999986543 4568999999999999999999999887654 2224333 3
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhc-----------CCHHHHHHHHHcCCC
Q 006076 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRH--GY--NGIVHIMTTLIDMYARF-----------GCVMYAGFVFSQMAV 250 (662)
Q Consensus 186 ~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~~~~ 250 (662)
+-..-+.|... .+.++++...-..++.. +. ......+-.+.-+|... ....++.+.+++..+
T Consensus 396 ~Lmasklc~e~---l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 396 LLMASKLCIER---LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred HHHHHHHHHhc---hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 33333444432 22266666666666552 11 11233444444444422 123345566665532
Q ss_pred C---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-CCCCchh
Q 006076 251 K---NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILP 326 (662)
Q Consensus 251 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~ 326 (662)
. |+.+.--+.--|+-.++.+.|++..++. ..-+-.-+...|..+.-.++..+++.+|..+.+..... |... .
T Consensus 473 ~d~~dp~~if~lalq~A~~R~l~sAl~~~~ea--L~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~--~ 548 (799)
T KOG4162|consen 473 FDPTDPLVIFYLALQYAEQRQLTSALDYAREA--LALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH--V 548 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHH--HHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh--h
Confidence 2 2222222333466778889999988888 44443456667777777778888888998888776543 2100 0
Q ss_pred HHHHHHHHHHhcCChHHHHHHH-------h-------------------hCC----C-CC-hhHHHHHHHHHHhcCChHH
Q 006076 327 VVSALVTMYARCGKLELGQCVF-------D-------------------HMD----K-RD-VVSWNSLISSYGVHGYGGK 374 (662)
Q Consensus 327 ~~~~li~~y~~~g~~~~A~~~~-------~-------------------~m~----~-~~-~~~~~~li~~~~~~g~~~~ 374 (662)
....-+..-..-++.++|.... + .+. + .| +.++..+..-....+ ..
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~ 626 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KS 626 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hh
Confidence 0000011111133333333221 1 111 0 11 112222211111100 00
Q ss_pred HHHHHHHHHHcCCCCCH--------hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 006076 375 AIQIFKEMIYHGVSPSP--------ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446 (662)
Q Consensus 375 A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 446 (662)
+..-. .|...-+.|.. ..+......+...+..++|...+.+..+. .+-....|......+...|.++||
T Consensus 627 ~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 627 AGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred ccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHH
Confidence 00000 02211122222 22344556778889999999888877543 244677888888899999999999
Q ss_pred HHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 447 AKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAER--ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 447 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
.+.|... -+.| ++.+..++...+...|+...|.. ++..+++++|.++.+|..|+.++-+.|+.++|...|....+-
T Consensus 704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9998876 5566 46778899999999999888888 999999999999999999999999999999999999987654
Q ss_pred CCcCCCceeEE
Q 006076 523 GLQKVPGRSRI 533 (662)
Q Consensus 523 ~~~~~~~~s~~ 533 (662)
.- ..|-..|.
T Consensus 784 e~-S~PV~pFs 793 (799)
T KOG4162|consen 784 EE-SNPVLPFS 793 (799)
T ss_pred cc-CCCccccc
Confidence 33 23444454
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.05 E-value=9.9e-06 Score=83.16 Aligned_cols=429 Identities=12% Similarity=0.097 Sum_probs=264.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 006076 83 YELLLLSCTHHNSLSDALNVHSHLTDN-GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161 (662)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 161 (662)
|..-+.....++++...+..|+..+.. .+.....+|...+......|-++-+..++++..+-++..-+-.|..+++.++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccc
Confidence 333445556678888888888877654 3344556788888888888888899999998887777778888999999999
Q ss_pred ccHHHHHHHHHhhCCC----CCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhc
Q 006076 162 GEEVLELYRRMNGTGT----GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI--VHIMTTLIDMYARF 235 (662)
Q Consensus 162 ~~~A~~l~~~m~~~~~----g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~ 235 (662)
+++|-+.+...+..+. .-+.+-..|.-+-...++..+. ..--....++...+.. -+| ...|++|.+.|.+.
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~-~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDK-VQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcch-hcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHh
Confidence 9999999988765410 1122333444444444444430 0011122233222222 233 47899999999999
Q ss_pred CCHHHHHHHHHcCCCC--CHhHHHHHHHHHHH----------------cCC------hhHHHHHHHHHhhhhCCC-----
Q 006076 236 GCVMYAGFVFSQMAVK--NVVSWSAMIACYAR----------------NGM------AFEALELFREMIMESHDL----- 286 (662)
Q Consensus 236 g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~----------------~g~------~~~A~~~~~~m~~~~~~~----- 286 (662)
|.++.|..+|++.... .+.-++.+-.+|++ .|+ .+-.+.-|+.+. ....+
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm-~rr~~~lNsV 340 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM-NRRPLLLNSV 340 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH-hccchHHHHH
Confidence 9999999999886543 22223333333332 111 112222333331 11111
Q ss_pred -----cCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 006076 287 -----CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS------ILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355 (662)
Q Consensus 287 -----~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 355 (662)
+.+..+|..-.. ...|+..+-...+.++++. +.| -...|..+.+.|-..|+++.|+.+|++..+-+
T Consensus 341 lLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 011122221111 1235566667777777764 122 23477889999999999999999999987643
Q ss_pred hh-------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----------C-------CHhHHHHHHHHHhcCCCHHHHH
Q 006076 356 VV-------SWNSLISSYGVHGYGGKAIQIFKEMIYHGVS----------P-------SPISFVSVLGACSHAGLVEEGK 411 (662)
Q Consensus 356 ~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-------~~~t~~~ll~a~~~~g~~~~a~ 411 (662)
-. .|-.-...=.++.+++.|+++.++....--. | +...|...+.--...|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 32 4555555556788899999988876542111 1 1122333444445567788888
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-C-C-CCCH-HHHHHHHHHHHhc---CCHHHHHHHHHH
Q 006076 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-R-I-EPGP-KVWGSLLGSCRIH---CNVELAERASKR 484 (662)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~-~p~~-~~~~~ll~~~~~~---g~~~~a~~~~~~ 484 (662)
.+++.+..-. + .++...-...-.+-...-++++.+++++- + + -|+. ..|++.+.-+.+. ...+.|..+|++
T Consensus 498 ~vYdriidLr-i-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 498 AVYDRIIDLR-I-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHh-c-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8888887533 2 23333333444456677889999999976 2 2 2444 5788888765432 468999999999
Q ss_pred HHhcCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 485 LFELEPTNA--GNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 485 ~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
+++.-|+.. ..|...+..=-+-|.-..|..++++..
T Consensus 576 aL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 576 ALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999877532 233334444445678888888888754
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.05 E-value=3.5e-08 Score=102.39 Aligned_cols=235 Identities=15% Similarity=0.172 Sum_probs=148.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHcCCCC----------CHh-HHHHHHHHHHHcCChhHHHHHHHHHhhhhCCC-cCC
Q 006076 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVK----------NVV-SWSAMIACYARNGMAFEALELFREMIMESHDL-CPN 289 (662)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~p~ 289 (662)
..+...|..+|...|+++.|..+|....+. .+. ..+.+...|...+++++|..+|+++......+ -++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455566778888888888888877664321 111 12234445555666666666665553111100 000
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC----------CCChh-H
Q 006076 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD----------KRDVV-S 358 (662)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----------~~~~~-~ 358 (662)
. +.-..+++.|...|.+.|++++|...++... .|.+. .
T Consensus 279 h-------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 279 H-------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred C-------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 0 0112334444555666666665555444332 12332 3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH----hHHHHHHHHHhcCCCHHHHHHHHHHhHHhc----C-CCC-
Q 006076 359 WNSLISSYGVHGYGGKAIQIFKEMIYH---GVSPSP----ISFVSVLGACSHAGLVEEGKMLFESMRKEH----M-IRP- 425 (662)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~~- 425 (662)
.+.++..+...+++++|..+++...+. -+.++. .+++.+...+.+.|++++|.++|+.+.... | ..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 556667777788888888888766542 123333 578888888999999999999998876532 1 122
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL--------RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFE 487 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (662)
....++.|...|.+.++.++|.++|.+. +-.|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2456788888999999999898888765 23344 36799999999999999999999998873
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=3.8e-08 Score=106.97 Aligned_cols=226 Identities=14% Similarity=0.023 Sum_probs=169.6
Q ss_pred CHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---------cCChHHHHHHHhhCCC-
Q 006076 289 NSVTMVSVLQACA-----ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR---------CGKLELGQCVFDHMDK- 353 (662)
Q Consensus 289 ~~~t~~~ll~a~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~m~~- 353 (662)
+...|...+.+-. ..+++++|...++++++... .+...+..+..+|.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 3444445555432 12457899999999987642 235566666665542 2447899999988764
Q ss_pred --CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-hHH
Q 006076 354 --RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-VEH 429 (662)
Q Consensus 354 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~ 429 (662)
.+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++...+. .|+ ...
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~ 408 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAA 408 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhh
Confidence 36678888888999999999999999999984 565 456777888999999999999999999753 454 333
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 006076 430 YACMVDLLGRANKLEEAAKIIEDLR--IEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506 (662)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (662)
+..+...+...|++++|...+++.- ..|+ +..+..+..++...|+.++|...++++....|.+......+...|...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 3444555777899999999998872 2353 455677778888999999999999999888888777778888888888
Q ss_pred CChHHHHHHHHHHHhC
Q 006076 507 DMWDEVKRVKRLLEAR 522 (662)
Q Consensus 507 g~~~~A~~~~~~m~~~ 522 (662)
| ++|...++.+.+.
T Consensus 489 g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 489 S--ERALPTIREFLES 502 (553)
T ss_pred H--HHHHHHHHHHHHH
Confidence 8 5888888877653
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=6.6e-07 Score=90.41 Aligned_cols=283 Identities=11% Similarity=-0.004 Sum_probs=158.2
Q ss_pred cchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHH
Q 006076 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225 (662)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 225 (662)
+..--.-..-+...+++.+.+++++...+. .++....+..-|.++...++ ..+-..+-..+++. .|....+|
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~---dpfh~~~~~~~ia~l~el~~----~n~Lf~lsh~LV~~-yP~~a~sW 315 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEK---DPFHLPCLPLHIACLYELGK----SNKLFLLSHKLVDL-YPSKALSW 315 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhh---CCCCcchHHHHHHHHHHhcc----cchHHHHHHHHHHh-CCCCCcch
Confidence 333444445566678888888888888775 34555555555666666666 33333333344443 35566777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc
Q 006076 226 TTLIDMYARFGCVMYAGFVFSQMAVKN---VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA 302 (662)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~ 302 (662)
-++.-.|.-.|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+......-.|. .--+.-+---|.+
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~---hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC---HLPSLYLGMEYMR 392 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC---cchHHHHHHHHHH
Confidence 777777777788888888887654322 3467777777887787788777666542111221 0111112223455
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006076 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382 (662)
Q Consensus 303 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 382 (662)
.++++.|.++|.++.... +.|+.+.+-+.-++...+.+.+|..+|+... ...+..
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l------------------------~~ik~~ 447 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKAL------------------------EVIKSV 447 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHH------------------------HHhhhc
Confidence 666666666666655442 3345555555444444455555555544221 000000
Q ss_pred HHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHH
Q 006076 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKV 461 (662)
Q Consensus 383 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 461 (662)
... ..--..+++.|..+|.+.+.+++|+..++..... .+.+..++.++.-.|...|+++.|.+.|.+. .+.||..+
T Consensus 448 ~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 448 LNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred ccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 000 0012345566666666666666666666666532 2446666666666666666777766666655 45666655
Q ss_pred HHHHHH
Q 006076 462 WGSLLG 467 (662)
Q Consensus 462 ~~~ll~ 467 (662)
-..++.
T Consensus 525 ~~~lL~ 530 (611)
T KOG1173|consen 525 ISELLK 530 (611)
T ss_pred HHHHHH
Confidence 555554
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.96 E-value=3.5e-07 Score=91.02 Aligned_cols=228 Identities=10% Similarity=-0.058 Sum_probs=148.0
Q ss_pred CChhHHHHHHHHHhhhhCCCcCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 006076 267 GMAFEALELFREMIMESHDLCPN--SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG 344 (662)
Q Consensus 267 g~~~~A~~~~~~m~~~~~~~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 344 (662)
+..+.++.-+.+++ ......|+ ...|......+...|+.++|...+..+++.. +.+...++.+...|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l-~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQIL-ASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHH-ccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666663 12222232 2345555556677788888888777777764 33577888888889999999999
Q ss_pred HHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc
Q 006076 345 QCVFDHMDK--R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421 (662)
Q Consensus 345 ~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 421 (662)
...|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|......
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 988887753 4 456788888888899999999999999887 4565432222222344567899999999765432
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHH--HHHHHHhc-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q 006076 422 MIRPSVEHYACMVDLLGRANKLEE--AAKIIEDL-RI----EP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN- 492 (662)
Q Consensus 422 ~~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~- 492 (662)
..|+... ..++..+ .|++.+ +.+.+.+- .. .| ....|..+...+...|+.++|...|+++++.+|.+
T Consensus 195 -~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 -LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 2333322 2333333 444433 33223221 11 12 34578899999999999999999999999999754
Q ss_pred cchHHHHHHHH
Q 006076 493 AGNYVLLADVY 503 (662)
Q Consensus 493 ~~~~~~l~~~~ 503 (662)
..+-..++...
T Consensus 271 ~e~~~~~~e~~ 281 (296)
T PRK11189 271 VEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHH
Confidence 33333444443
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=4.1e-08 Score=92.09 Aligned_cols=221 Identities=12% Similarity=0.006 Sum_probs=138.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChhHH-HHHHHHHHhcCChHH
Q 006076 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RDVVSW-NSLISSYGVHGYGGK 374 (662)
Q Consensus 298 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~-~~li~~~~~~g~~~~ 374 (662)
..|.++|.+.+|+..++...+. .|-+.+|-.|-..|.+..+.+.|..+|.+-.+ |.-+|| .-+...+-..++.++
T Consensus 231 kCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 3334444444444444443333 22233444444555555555555555554442 322332 234444555566666
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 006076 375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454 (662)
Q Consensus 375 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (662)
|.++|++..+.. ..+......+...|.-.++++-|..++.++.. .|+ .+++.|+.+.-.|.-.++++-++.-|.+..
T Consensus 309 a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 309 ALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 666666666531 22334444555556666666777777666653 333 456666666666666666666666666541
Q ss_pred ---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 455 ---IEPG--PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 455 ---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
-.|+ ..+|-.|.......||+..|.+.|+..+..+|++..+++.|+-+-.+.|++++|..++.......
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 1233 45688888888888999999999999999999999999999999999999999999999887644
No 74
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=1.5e-06 Score=89.94 Aligned_cols=432 Identities=12% Similarity=0.075 Sum_probs=223.8
Q ss_pred hhhccCC-CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh-cCCCCCHhhHHHHHHHHhcCCChH
Q 006076 20 NSIAHLP-PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS-IEPNPTQHTYELLLLSCTHHNSLS 97 (662)
Q Consensus 20 ~li~~y~-~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~ 97 (662)
+++.+.. .+..|..+| +.+.++.. -|..|....++++|+.+-+ .+.+.-...-.+-++++...|+-+
T Consensus 538 a~lail~kkfk~ae~if---leqn~te~--------aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ 606 (1636)
T KOG3616|consen 538 AMLAILEKKFKEAEMIF---LEQNATEE--------AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDE 606 (1636)
T ss_pred HHHHHHHhhhhHHHHHH---HhcccHHH--------HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchh
Confidence 3444444 788888888 23333332 7888888899999999888 433323333344456666666666
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHh--cCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhC
Q 006076 98 DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175 (662)
Q Consensus 98 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 175 (662)
.|-++- . +.--.-+-|+.|.+.|.+..|.+.-. +....|......+..++.+..-+++|=.+|+++...
T Consensus 607 ka~elk----~-----sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~ 677 (1636)
T KOG3616|consen 607 KAAELK----E-----SDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDF 677 (1636)
T ss_pred hhhhhc----c-----ccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH
Confidence 554432 1 11223456889999999888877652 222234444444445555555555555555554321
Q ss_pred CCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHH------------------------H---HH
Q 006076 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM------------------------T---TL 228 (662)
Q Consensus 176 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------------------------~---~l 228 (662)
.-.+..+.+... +-+|.++-.. .++..+... | .-
T Consensus 678 -----------dkale~fkkgda----f~kaielarf----afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 678 -----------DKALECFKKGDA----FGKAIELARF----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred -----------HHHHHHHHcccH----HHHHHHHHHh----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 111111111111 2222221111 011111000 0 11
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCCHhH--HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCH
Q 006076 229 IDMYARFGCVMYAGFVFSQMAVKNVVS--WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306 (662)
Q Consensus 229 i~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~ 306 (662)
+.+-.....+.+|..+++.+..+++.+ |..+..-|+..|+++.|.++|.+. + .+.-.+..|.+.|.+
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-----D------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-----c------hhHHHHHHHhccccH
Confidence 222233444555555555554443332 444445555555555555555433 1 123344455555555
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006076 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386 (662)
Q Consensus 307 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 386 (662)
+.|.++-.+. .|.+.....|-+-..-+-+.|++.+|++++-.+..|+. -|..|-++|..+..+++..+-
T Consensus 808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~---- 876 (1636)
T KOG3616|consen 808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH---- 876 (1636)
T ss_pred HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh----
Confidence 5554443322 22233344444444444555555555555555555543 244555666666555555442
Q ss_pred CCCCH--hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCC----CCCHH
Q 006076 387 VSPSP--ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI----EPGPK 460 (662)
Q Consensus 387 ~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~ 460 (662)
.|+. .|-..+..-+...|++..|..-|-+.. -|.+-+++|-..+.+++|.++-+.-+- +.-..
T Consensus 877 -h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~f 945 (1636)
T KOG3616|consen 877 -HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAF 945 (1636)
T ss_pred -ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHH
Confidence 2332 455566666777888888877665442 245677888888999999888765430 11123
Q ss_pred HHHH------HHHHHHhcCCHHHHHHHH------HHHHh-----cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 461 VWGS------LLGSCRIHCNVELAERAS------KRLFE-----LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 461 ~~~~------ll~~~~~~g~~~~a~~~~------~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
.|.- -+..+.++|-.+.|.... +-+++ .....+....-++..+...|++++|.+-+-+..+.+
T Consensus 946 lwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 946 LWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 3432 122344555555554432 11111 122234567777888889999999988776665543
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=1.9e-06 Score=82.00 Aligned_cols=129 Identities=15% Similarity=0.061 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHH-HHHHHHHh
Q 006076 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY-ACMVDLLG 438 (662)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~ 438 (662)
.+|.+.+.-..++++.+-.+.....- +..|..--..+..|.+..|++.+|.++|-.+. ...++ |..+| ..|...|.
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~ik-n~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEIK-NKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-Chhhh-hhHHHHHHHHHHHH
Confidence 34444444445555555555555443 22222222334555666666666666665553 11122 22233 33445566
Q ss_pred hcCCHHHHHHHHHhcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076 439 RANKLEEAAKIIEDLRIEPGPKVWGS-LLGSCRIHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (662)
++++++-|++++-++....+..+... +.+-|.+.+.+--|-++|..+..++|.
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 66666666666666542223333322 224455556666666666666656554
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.8e-06 Score=82.12 Aligned_cols=438 Identities=13% Similarity=0.098 Sum_probs=221.9
Q ss_pred HHHHHhCCCchHHHHHHh--cCCC-CCHhhHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCCh
Q 006076 56 IQSLCKQGNLRQALDVLS--IEPN-PTQHTYELLLLS-CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV 131 (662)
Q Consensus 56 i~~~~~~g~~~~A~~~~~--~~~~-p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 131 (662)
+.-+..+.++..|+.+++ .... -.......-+.. +-+.|++++|...+..+.... .++..++-.|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 455566667777777776 1111 111233333333 346677777777776665533 44555555555555555667
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHH
Q 006076 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211 (662)
Q Consensus 132 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~ 211 (662)
.+|..+-.+.++ ++..-..|...-.+.|+-++-+.+-..+... .-|..+..++- |.+.. +++|..++.
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~----~EdqLSLAsvh--YmR~H-----YQeAIdvYk 175 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT----LEDQLSLASVH--YMRMH-----YQEAIDVYK 175 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHH--HHHHH-----HHHHHHHHH
Confidence 777666655443 2222223333334445544444444433321 12222222221 11111 556666666
Q ss_pred HHHHhCCCCchhHHHH-HHHHHHhcCCHHHHHHHHHcCC---CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCc
Q 006076 212 SVLRHGYNGIVHIMTT-LIDMYARFGCVMYAGFVFSQMA---VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287 (662)
Q Consensus 212 ~~~~~g~~~~~~~~~~-li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 287 (662)
.++..+ |+-...|. +.-.|.|..-++-+.++++--. ..+++.-|.......+.=....|..-.+++ ...+-.
T Consensus 176 rvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~l--adN~~~ 251 (557)
T KOG3785|consen 176 RVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKEL--ADNIDQ 251 (557)
T ss_pred HHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHH--Hhcccc
Confidence 555432 22222222 2223445554554444433221 113344444443333322222222222222 111100
Q ss_pred CCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHH
Q 006076 288 PNSVTMVSVLQACA----ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI 363 (662)
Q Consensus 288 p~~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li 363 (662)
. |--.-..|. --.+-+.|.+++--+.+. =+..--.|+--|.+.+++++|..+.+.+....+.-|-.-.
T Consensus 252 --~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKg 323 (557)
T KOG3785|consen 252 --E--YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKG 323 (557)
T ss_pred --c--chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHH
Confidence 0 111111111 112334444444333332 1223344666788999999999998888654444332222
Q ss_pred HHHHhcCC-------hHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076 364 SSYGVHGY-------GGKAIQIFKEMIYHGVSPSPI-SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435 (662)
Q Consensus 364 ~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 435 (662)
-.++..|+ ..-|.+.|+-.-..+..-|.. ---++.+++.-.-++++.+-++..+. .+=...|...+ .+..
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQ 401 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQ 401 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHH
Confidence 22333332 334555555444444443332 22344455555667888888888885 44233344444 5788
Q ss_pred HHhhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcC-CCC-cchHHHHHHHHHhcCChH
Q 006076 436 LLGRANKLEEAAKIIEDLR-IE-PGPKVWGSLLGSC-RIHCNVELAERASKRLFELE-PTN-AGNYVLLADVYAAADMWD 510 (662)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~ 510 (662)
+++..|.+.+|+++|-.+. .+ .|..+|.+++.-| .+.+..+.|.. .++..+ |.+ ......+++-|.+++.+-
T Consensus 402 Ak~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~---~~lk~~t~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD---MMLKTNTPSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH---HHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998873 11 3677887777654 56677777644 445444 322 334556788889999999
Q ss_pred HHHHHHHHHHhCC
Q 006076 511 EVKRVKRLLEARG 523 (662)
Q Consensus 511 ~A~~~~~~m~~~~ 523 (662)
-|.+.|+.+...+
T Consensus 479 yaaKAFd~lE~lD 491 (557)
T KOG3785|consen 479 YAAKAFDELEILD 491 (557)
T ss_pred HHHHhhhHHHccC
Confidence 9999999887644
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.90 E-value=1.8e-05 Score=83.57 Aligned_cols=254 Identities=17% Similarity=0.154 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006076 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPN-SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333 (662)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 333 (662)
++.-+...|-..|++++|+++.++. .. ..|+ ...|..-...+-+.|++++|....+.+..... .|.++-+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~a--I~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aK 270 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKA--IE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH--Hh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHH
Confidence 3455667788889999999999876 32 3455 45677777788889999999999988887763 37777788888
Q ss_pred HHHhcCChHHHHHHHhhCCCCChh----------HH--HHHHHHHHhcCChHHHHHHHHHHHHc--CCC-----------
Q 006076 334 MYARCGKLELGQCVFDHMDKRDVV----------SW--NSLISSYGVHGYGGKAIQIFKEMIYH--GVS----------- 388 (662)
Q Consensus 334 ~y~~~g~~~~A~~~~~~m~~~~~~----------~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~----------- 388 (662)
.+.++|++++|.+++....+++.. .| ..-..+|.+.|++..|++-|....+. .+.
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~ 350 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCL 350 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 889999999999988877654421 23 33466788999998888877665442 111
Q ss_pred --CCHhHHHHHHHHHhcCCC-------HHHHHHHHHHhHHhcCCCC-----------ChHHHHHHHHHH---hhcCCHHH
Q 006076 389 --PSPISFVSVLGACSHAGL-------VEEGKMLFESMRKEHMIRP-----------SVEHYACMVDLL---GRANKLEE 445 (662)
Q Consensus 389 --p~~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~~-----------~~~~~~~li~~~---~~~g~~~~ 445 (662)
.+..+|..+|.-.-+... ...|.+++-.+........ +..--..+-.-- .+...-++
T Consensus 351 RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~ 430 (517)
T PF12569_consen 351 RKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEE 430 (517)
T ss_pred hhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHH
Confidence 223344444443322211 1234444444432110000 000001111000 11111111
Q ss_pred HHHHHH-----------hc----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076 446 AAKIIE-----------DL----R--IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508 (662)
Q Consensus 446 A~~~~~-----------~m----~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (662)
+...-. +. + ..||+.- ..|+ ....-.++|.++++-+.+..|++..+|..--++|.+.|+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K 506 (517)
T PF12569_consen 431 AEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGK 506 (517)
T ss_pred HHHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCc
Confidence 211110 00 1 1122211 1122 123457889999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 006076 509 WDEVKRVKR 517 (662)
Q Consensus 509 ~~~A~~~~~ 517 (662)
+--|.+.+.
T Consensus 507 ~LLaLqaL~ 515 (517)
T PF12569_consen 507 YLLALQALK 515 (517)
T ss_pred HHHHHHHHH
Confidence 988887664
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=1.9e-07 Score=83.87 Aligned_cols=163 Identities=16% Similarity=0.087 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 436 (662)
+...|.-+|.+.|+...|.+-+++.++ ..|+. .++..+...|.+.|..+.|.+-|+...+.. +.+-.+.|...-.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHH
Confidence 345567788999999999999999888 45654 678888888999999999999999887532 3367788999999
Q ss_pred HhhcCCHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHH
Q 006076 437 LGRANKLEEAAKIIEDLRIEP----GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512 (662)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (662)
+|..|++++|...|++.-..| -..+|..+.-+..+.|+.+.|...+++.++.+|+.+.+...+.+...+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999873233 3467888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 006076 513 KRVKRLLEARGL 524 (662)
Q Consensus 513 ~~~~~~m~~~~~ 524 (662)
...++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998887654
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=7.7e-08 Score=90.28 Aligned_cols=230 Identities=13% Similarity=0.104 Sum_probs=189.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006076 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336 (662)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 336 (662)
+.|..+|.+.|.+.+|.+.|+.. .. -.|-..||..+-.+|.+..+++.|..++.+-++. ++-|+....-....+-
T Consensus 227 ~Q~gkCylrLgm~r~Aekqlqss--L~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSS--LT--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHH--hh--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 67889999999999999999866 32 3467778888889999999999999999887765 3445555566777888
Q ss_pred hcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHH
Q 006076 337 RCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413 (662)
Q Consensus 337 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 413 (662)
..++.++|.++++...+ .|+.+...+..+|.-.++.+-|+..|+++++.|+. +...|+.+.-+|.-.+++|-++.-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 88999999999998874 46667777888899999999999999999999965 567888888899999999999999
Q ss_pred HHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076 414 FESMRKEHMIRPS--VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELE 489 (662)
Q Consensus 414 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (662)
|++..... -.|+ ..+|..+.....-.|++.-|.+.|+-. ...| ....++.|.-.-.+.|+++.|..+++.+....
T Consensus 381 f~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99886432 2343 467888988899999999999999876 2233 56788888888889999999999999999998
Q ss_pred CCCc
Q 006076 490 PTNA 493 (662)
Q Consensus 490 p~~~ 493 (662)
|+-.
T Consensus 460 P~m~ 463 (478)
T KOG1129|consen 460 PDMA 463 (478)
T ss_pred cccc
Confidence 8743
No 80
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.80 E-value=8.9e-06 Score=84.35 Aligned_cols=190 Identities=14% Similarity=0.263 Sum_probs=93.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 006076 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381 (662)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (662)
....+.+|..+++.+...... ..-|.-+.+-|+..|+++.|+++|-+.. .++--|..|.+.|+++.|.++-.+
T Consensus 744 ~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHH
Confidence 334444555555444433211 1233444555555555555555554331 233344555555555555555443
Q ss_pred HHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHH
Q 006076 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461 (662)
Q Consensus 382 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~ 461 (662)
.. |.......|.+-..-.-..|++.+|.+++-.+. .|+. -|.+|-+.|..++.+++.++-.-..-..|
T Consensus 817 ~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt 884 (1636)
T KOG3616|consen 817 CH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDT 884 (1636)
T ss_pred hc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHH
Confidence 32 122223333333334445555555555543331 2332 34555555555555555554310111123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (662)
-..+..-+-..|+...|+.-|-++ .-+..-+++|-..+.|++|.++-+.
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 333444455556666655544433 3355667888888999988887664
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.80 E-value=0.00017 Score=74.65 Aligned_cols=432 Identities=11% Similarity=0.025 Sum_probs=229.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcC
Q 006076 84 ELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAG 160 (662)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 160 (662)
..+++. -..+++..+..+...+++. .+-...+.....-.+...|+-++|......-.+ ++.+.|..+.-.+-...
T Consensus 12 ~~~lk~-yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKC-YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHH-HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 334443 3456677777777777663 222333333333334456788888777765443 35578888877777778
Q ss_pred CccHHHHHHHHHhhCCCCCCCChh-hHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 006076 161 RGEEVLELYRRMNGTGTGIRSDRF-TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239 (662)
Q Consensus 161 ~~~~A~~l~~~m~~~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 239 (662)
++++|+..|+..... .||.. .+.-+--.-++.++ ++.....-....+.. +.....|..+..++.-.|+..
T Consensus 90 ~Y~eaiKcy~nAl~~----~~dN~qilrDlslLQ~QmRd----~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKI----EKDNLQILRDLSLLQIQMRD----YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred hHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Confidence 888888888887754 45443 22222222233344 444444444443332 233445666666666667777
Q ss_pred HHHHHHHcCCC-----CCHhHHHHH------HHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHH-HHHHHHHccCCHH
Q 006076 240 YAGFVFSQMAV-----KNVVSWSAM------IACYARNGMAFEALELFREMIMESHDLCPNSVTMV-SVLQACAALAALE 307 (662)
Q Consensus 240 ~A~~~f~~~~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~-~ll~a~~~~~~~~ 307 (662)
.|..+.+.... ++...+.-. ......+|..++|++.+..- + +-..|...+. +-...+.+.++++
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~--e--~~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN--E--KQIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh--h--hHHHHHHHHhhhHHHHHHHHhhHH
Confidence 77776655431 233222221 23345667777777766543 1 1112333222 2334456777778
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH-HHHhhCCC--CChhHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 006076 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ-CVFDHMDK--RDVVSWNSLISSYGVHGYG-GKAIQIFKEMI 383 (662)
Q Consensus 308 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~m~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 383 (662)
+|..++..++... +.+...|-.+..++.+--+.-++. .+|....+ |-...-.-+--......++ +..-+++..+.
T Consensus 237 eA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 237 EAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred hHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 8887777777764 223333444445554333333333 45554432 0000000000001111222 23334556666
Q ss_pred HcCCCCCHhHHHHHHHHHhcCCCHHH----HHHHHHHhHHhc--------C-CCCChH--HHHHHHHHHhhcCCHHHHHH
Q 006076 384 YHGVSPSPISFVSVLGACSHAGLVEE----GKMLFESMRKEH--------M-IRPSVE--HYACMVDLLGRANKLEEAAK 448 (662)
Q Consensus 384 ~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~--------~-~~~~~~--~~~~li~~~~~~g~~~~A~~ 448 (662)
+.|++|--..+.++. -.-...+- +..+...+.... . -+|+.. ++-.++..|-+.|+++.|..
T Consensus 316 ~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 777665333333322 21111111 111111111000 0 134443 44567788889999999999
Q ss_pred HHHhc-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc-
Q 006076 449 IIEDL-RIEPGPK-VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ- 525 (662)
Q Consensus 449 ~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~- 525 (662)
+++.. ...|+.+ .|..-...+...|+.++|...++++.+++-.|...-.--+.-..++.+.++|.++..+....|..
T Consensus 393 yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~ 472 (700)
T KOG1156|consen 393 YIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGA 472 (700)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccch
Confidence 98876 4456543 34444466777889999999999999988655433334556667888999999988887765531
Q ss_pred ----CCCceeEEE
Q 006076 526 ----KVPGRSRIE 534 (662)
Q Consensus 526 ----~~~~~s~~~ 534 (662)
.+..|.|..
T Consensus 473 ~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQ 485 (700)
T ss_pred hhhHHHhhhHHHh
Confidence 123467754
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.0001 Score=79.46 Aligned_cols=157 Identities=17% Similarity=0.231 Sum_probs=118.7
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhH
Q 006076 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418 (662)
Q Consensus 339 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 418 (662)
+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+. -|+..|.-++.++++.|.+++-..++...+
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344444444444333 356899999999999999999888542 356789999999999999999999998876
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 006076 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVL 498 (662)
Q Consensus 419 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (662)
++ .-+|.+. +.||-+|++.+++.|-++++. .|+..-...+..-|...+.++.|.-++.. .+.|.-
T Consensus 1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~ 1225 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAK 1225 (1666)
T ss_pred Hh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHH
Confidence 54 3455544 579999999999999877764 47777777888889999999988877764 456777
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 006076 499 LADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 499 l~~~~~~~g~~~~A~~~~~~ 518 (662)
|+..+...|.+..|...-++
T Consensus 1226 La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 77777777877777665444
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.78 E-value=1.4e-05 Score=84.02 Aligned_cols=408 Identities=15% Similarity=0.097 Sum_probs=241.3
Q ss_pred CCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCC-----CcchH
Q 006076 75 EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR-----TIYVW 149 (662)
Q Consensus 75 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~ 149 (662)
..+.|...|..+.-+....|+++.+-+.|++....-+ -....|+.+-..|..+|.-..|..+.++-..+ |+..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3446777888887778888888888888887766432 34567777888888888888888888654332 22222
Q ss_pred HHHHHHHHh-cCCccHHHHHHHHHhhCC----CCCCCChhhHHHHHHHHHhC------CC-CccchHHHHHHHHHHHHhC
Q 006076 150 NALFRALTL-AGRGEEVLELYRRMNGTG----TGIRSDRFTYTYVLKACVAS------SC-GFSLLKHGKEIHASVLRHG 217 (662)
Q Consensus 150 ~~li~~~~~-~g~~~~A~~l~~~m~~~~----~g~~p~~~t~~~ll~~~~~~------~~-~~~~~~~a~~~~~~~~~~g 217 (662)
-..-..|.+ -+..+++++.-.+..... ..++|-.. -.+--+|... .+ +.....++.+.++..++.+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~--l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGY--LFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHH--HHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 222222322 355666665555544410 01333222 2211111110 00 1222566777788877765
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC----CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHH
Q 006076 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA----VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293 (662)
Q Consensus 218 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~ 293 (662)
+.|..+.-.|.--|+-.++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+... ...|. |....
T Consensus 475 -~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al-~E~~~--N~~l~ 550 (799)
T KOG4162|consen 475 -PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL-EEFGD--NHVLM 550 (799)
T ss_pred -CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHhhh--hhhhc
Confidence 3333333334445667778888877766543 3467888888888888888888888877663 22221 11111
Q ss_pred HHHHHHHHccCCHHHHHHH-------HH----------HHH----HhCC-------CCchhHHHHHHHHHHh---cCChH
Q 006076 294 VSVLQACAALAALEQGKMI-------HG----------YIL----RRGL-------DSILPVVSALVTMYAR---CGKLE 342 (662)
Q Consensus 294 ~~ll~a~~~~~~~~~a~~~-------~~----------~~~----~~g~-------~~~~~~~~~li~~y~~---~g~~~ 342 (662)
..-+..-...++.+++... |+ +.. +.|+ ...+.++..+...... .-..+
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 1111111112222222211 11 111 1111 1112233322222221 11111
Q ss_pred HHHHHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHH
Q 006076 343 LGQCVFDHMDKRD------VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFE 415 (662)
Q Consensus 343 ~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 415 (662)
.....+...+.|+ ...|......+.+.++.++|...+.+... +.| ....|......+...|..++|.+.|.
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 1112222222333 23566777888899999999988888776 334 33455555566777899999999998
Q ss_pred HhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHH--HHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076 416 SMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAK--IIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490 (662)
Q Consensus 416 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (662)
.... +.| ++....++..++.+.|+..-|.. ++.++ .+.| +...|-.+...+.+.|+.+.|-..|.-..++++
T Consensus 709 ~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 709 VALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 8764 456 57788999999999998777776 77776 5566 678999999999999999999999999999987
Q ss_pred CCcc
Q 006076 491 TNAG 494 (662)
Q Consensus 491 ~~~~ 494 (662)
.+|.
T Consensus 786 S~PV 789 (799)
T KOG4162|consen 786 SNPV 789 (799)
T ss_pred CCCc
Confidence 7653
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.76 E-value=4.4e-06 Score=88.05 Aligned_cols=148 Identities=13% Similarity=0.081 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc----C---------CCCCh--HHHHHHHHHHh
Q 006076 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH----M---------IRPSV--EHYACMVDLLG 438 (662)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~---------~~~~~--~~~~~li~~~~ 438 (662)
.+..++..+...|+++ +|+.|-.-|......+-..+++....... . -+|+. .++.-+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3445556666777544 44444444554444444444444443211 0 12333 34456677788
Q ss_pred hcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 006076 439 RANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516 (662)
Q Consensus 439 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (662)
..|++++|++++++. ...|+ +..|..-...+...|++++|...++.+.++++.|...-.-.+..+.++|++++|.++.
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888999999888866 45565 4567777778888899999999999998888887666666777888889999998888
Q ss_pred HHHHhCCC
Q 006076 517 RLLEARGL 524 (662)
Q Consensus 517 ~~m~~~~~ 524 (662)
......+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 88776654
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2.6e-07 Score=93.61 Aligned_cols=219 Identities=11% Similarity=0.065 Sum_probs=175.1
Q ss_pred HHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHH
Q 006076 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAI 376 (662)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 376 (662)
+.+.|++.+|.-.|+..++.. +.+...|.-|....+..++-..|+..+.+..+ .|....-+|...|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 357788999999999988875 44688888898888988888888888887764 46677888888999999999999
Q ss_pred HHHHHHHHcCCC-----C---CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 006076 377 QIFKEMIYHGVS-----P---SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448 (662)
Q Consensus 377 ~~~~~m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 448 (662)
+.++.-.....+ + +..+-.. ..+.+...+.+..++|-.+....+..+|+.++..|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887653211 0 1100000 12223334556667777777666666889999999999999999999999
Q ss_pred HHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 449 IIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 449 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.|+.. .++| |..+||-|....+...+.++|...|.+++++.|.-..+...|+-.|...|.++||.+.+=....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99987 5677 6788999999999999999999999999999999999999999999999999999998876543
No 86
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=0.00012 Score=78.90 Aligned_cols=443 Identities=12% Similarity=0.107 Sum_probs=240.3
Q ss_pred Hhhccc---cchhhhccCC-CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCC-------
Q 006076 11 QLLRSP---YHTNSIAHLP-PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPT------- 79 (662)
Q Consensus 11 ~~~g~~---~~~~li~~y~-~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~------- 79 (662)
+..|.. +.|+|-..|- +-....+++ .+-+.-|+ ..+.-||...++--|.-.|++|..-.
T Consensus 865 i~eG~~d~a~hnAlaKIyIDSNNnPE~fL-keN~yYDs---------~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcN 934 (1666)
T KOG0985|consen 865 IQEGSQDPATHNALAKIYIDSNNNPERFL-KENPYYDS---------KVVGKYCEKRDPHLACVAYERGQCDLELINVCN 934 (1666)
T ss_pred HhccCcchHHHhhhhheeecCCCChHHhc-ccCCcchh---------hHHhhhhcccCCceEEEeecccCCcHHHHHhcC
Confidence 345654 8899999888 445555555 44333222 26677787777776665555332210
Q ss_pred -HhhHHHHHHHHhcCCChH-----------HHHHHHHHHHHhCC--CCChhHHHHHHHHhhcCCChHHHHHHHhcCCC-C
Q 006076 80 -QHTYELLLLSCTHHNSLS-----------DALNVHSHLTDNGF--DQDPFLVTKLINVYSHFDSVDDARHVFDKTRR-R 144 (662)
Q Consensus 80 -~~~~~~ll~~~~~~~~~~-----------~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~ 144 (662)
...|-...+-+....+.+ --+++.++.+..++ ..|+.-.+.-+.++...+-..+-.++++++.- +
T Consensus 935 eNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~ 1014 (1666)
T KOG0985|consen 935 ENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN 1014 (1666)
T ss_pred chhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC
Confidence 111222222222222222 12344445554443 23444445556666666666666666666542 2
Q ss_pred Cc-----chHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCC
Q 006076 145 TI-----YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219 (662)
Q Consensus 145 ~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ 219 (662)
++ ..-|.||-...+ -+.....+..+++-.- -.|+. ...+....- +++|..+|... .
T Consensus 1015 S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdny---Da~~i------a~iai~~~L----yEEAF~ifkkf-----~ 1075 (1666)
T KOG0985|consen 1015 SVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNY---DAPDI------AEIAIENQL----YEEAFAIFKKF-----D 1075 (1666)
T ss_pred cccccchhhhhhHHHHHhh-cChHHHHHHHHHhccC---CchhH------HHHHhhhhH----HHHHHHHHHHh-----c
Confidence 22 223333333332 2334445555544322 11221 112222222 56666666442 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHH
Q 006076 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299 (662)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a 299 (662)
.+....+.||+ .-+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+. -|+..|.-+++.
T Consensus 1076 ~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~ 1142 (1666)
T KOG0985|consen 1076 MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDV 1142 (1666)
T ss_pred ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHH
Confidence 34444444544 346677777777776654 57999999999999999999988755 377889999999
Q ss_pred HHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhH---------------------
Q 006076 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS--------------------- 358 (662)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~--------------------- 358 (662)
+.+.|.+++-.+++..+.+..-+|. +-+.||-+|++.+++.+-++++. -||+.-
T Consensus 1143 a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1143 ASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 9999999999999988888766665 45679999999999988776654 344443
Q ss_pred -----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 006076 359 -----WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433 (662)
Q Consensus 359 -----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 433 (662)
|..|...+...|++..|...-++. .+..||.-+-.||...+.+..|. |.. ..+.....-..-|
T Consensus 1218 ~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeel 1285 (1666)
T KOG0985|consen 1218 SNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEEL 1285 (1666)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHH
Confidence 444444444444444444333321 13345555555555544443321 110 1122233445556
Q ss_pred HHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHhcCChH
Q 006076 434 VDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFE-LEPTNAGNYVLLADVYAAADMWD 510 (662)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~ 510 (662)
+..|-..|.++|-+.+++.. +++. .-..|+-|.-.|++-. .++..+.++-... ++ .--++.+.-++.-|.
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvN------ipKviRA~eqahlW~ 1358 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVN------IPKVIRAAEQAHLWS 1358 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcc------hHHHHHHHHHHHHHH
Confidence 66677777777766666654 3322 3334444444444432 3333333332221 11 112455556666666
Q ss_pred HHHHHHHHH
Q 006076 511 EVKRVKRLL 519 (662)
Q Consensus 511 ~A~~~~~~m 519 (662)
|..-++.+-
T Consensus 1359 ElvfLY~~y 1367 (1666)
T KOG0985|consen 1359 ELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHhh
Confidence 666655543
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.72 E-value=0.0006 Score=70.70 Aligned_cols=411 Identities=12% Similarity=0.036 Sum_probs=194.7
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCCccHHH
Q 006076 90 CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR---RRTIYVWNALFRALTLAGRGEEVL 166 (662)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 166 (662)
+...|+-++|....+..++..+ .+.+.|..+.-.+-...++++|.+.|.... ..|...|.-+--.-++.++++...
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3445666666666665555432 234455555555555566777777765432 234445554444444555665555
Q ss_pred HHHHHHhhCCCCCCCC-hhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhC-CCCchhHHHHHHH------HHHhcCCH
Q 006076 167 ELYRRMNGTGTGIRSD-RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG-YNGIVHIMTTLID------MYARFGCV 238 (662)
Q Consensus 167 ~l~~~m~~~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~------~y~~~g~~ 238 (662)
..-....+. .|. ...|.....+.--.++ ...|..+.+...+.. -.|+...+.-... ...+.|.+
T Consensus 130 ~tr~~LLql----~~~~ra~w~~~Avs~~L~g~----y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~ 201 (700)
T KOG1156|consen 130 ETRNQLLQL----RPSQRASWIGFAVAQHLLGE----YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL 201 (700)
T ss_pred HHHHHHHHh----hhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence 555555443 222 2234444444444455 666666666665554 2344333332221 23345666
Q ss_pred HHHHHHHHcCCCC--CHhH-HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHH-c-cCCHHHHHHHH
Q 006076 239 MYAGFVFSQMAVK--NVVS-WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA-A-LAALEQGKMIH 313 (662)
Q Consensus 239 ~~A~~~f~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~-~-~~~~~~a~~~~ 313 (662)
++|.+.....+.. |-.. --+...-+.+.++.++|..++..+ ... .||..-|.-.+..+. . ....+....++
T Consensus 202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L--l~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly 277 (700)
T KOG1156|consen 202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL--LER--NPDNLDYYEGLEKALGKIKDMLEALKALY 277 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH--Hhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6666655544322 2111 223344556667777777777666 332 366555555444433 1 22222222444
Q ss_pred HHHHHhC---CCCchhHHHHHHHHHHhcCChHH-HHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHH----H
Q 006076 314 GYILRRG---LDSILPVVSALVTMYARCGKLEL-GQCVFDHMDKRD-VVSWNSLISSYGVHGYGGKAIQIFKEMI----Y 384 (662)
Q Consensus 314 ~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~ 384 (662)
....+.- ..|-....+.+ ...++.+ ..+++..+.++. +..+..+.+-|-.-...+-..++.-.+. .
T Consensus 278 ~~ls~~y~r~e~p~Rlplsvl-----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~ 352 (700)
T KOG1156|consen 278 AILSEKYPRHECPRRLPLSVL-----NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG 352 (700)
T ss_pred HHHhhcCcccccchhccHHHh-----CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence 4333220 01110000000 0011111 111222222111 1222233332222111111111111111 1
Q ss_pred cC----------CCCCHh--HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHH
Q 006076 385 HG----------VSPSPI--SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLGRANKLEEAAKIIE 451 (662)
Q Consensus 385 ~g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 451 (662)
.| -+|... |+..+...+-+.|+++.|..+.+..... .|+ ++.|..-...+...|.+++|..+++
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH~G~l~eAa~~l~ 429 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKHAGLLDEAAAWLD 429 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 11 134432 3444566677788888888888877632 343 4566666677788888888888887
Q ss_pred hcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hH--HHHHHHHHhcCChHHHHHHHHHHH
Q 006076 452 DLR-I-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG-------NY--VLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 452 ~m~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~--~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
+.. + .||...-.--..-..+.++.++|..+..+.-..+-+-.. .| ..=+.+|.+.|++.+|.+-|..+.
T Consensus 430 ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 430 EAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 763 1 344433323334445667778887777766554321000 11 123567778888888877666554
Q ss_pred h
Q 006076 521 A 521 (662)
Q Consensus 521 ~ 521 (662)
.
T Consensus 510 k 510 (700)
T KOG1156|consen 510 K 510 (700)
T ss_pred H
Confidence 3
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.68 E-value=1.5e-06 Score=85.21 Aligned_cols=247 Identities=13% Similarity=0.045 Sum_probs=139.1
Q ss_pred HhcCCHHHHHHHHHc--CCC-CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHH
Q 006076 233 ARFGCVMYAGFVFSQ--MAV-KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309 (662)
Q Consensus 233 ~~~g~~~~A~~~f~~--~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 309 (662)
.-.|++..+..-.+. ... .+.....-+.++|...|+++.++. ++ .... .|.......+...+....+-+.+
T Consensus 12 fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei--~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 12 FYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EI--KKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS---TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---Hh--ccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 335777777654441 111 123345556777888887765543 33 2222 55555554444444333333333
Q ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006076 310 KMIHGYILRRGLD-SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388 (662)
Q Consensus 310 ~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 388 (662)
..-+...+..... .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 3333222222222 23333334445666778888888877765 45556666778888888888888888888763 3
Q ss_pred CCHhHHHHHHHHHhc----CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHH
Q 006076 389 PSPISFVSVLGACSH----AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVW 462 (662)
Q Consensus 389 p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 462 (662)
.| .+...+..++.. ...+.+|..+|+++..+ ..+++.+.+.+..+....|++++|.+++.+. ...| ++.+.
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 33 444445444332 23577788888887543 3567777777777777777777777777765 2233 45556
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHhcCCCC
Q 006076 463 GSLLGSCRIHCNV-ELAERASKRLFELEPTN 492 (662)
Q Consensus 463 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~ 492 (662)
..++......|+. +.+.+...++....|+.
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 6666666666666 55666777777777764
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=3.6e-05 Score=79.42 Aligned_cols=294 Identities=8% Similarity=-0.093 Sum_probs=161.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHcCC---CC--CH-hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH-HHHHH
Q 006076 223 HIMTTLIDMYARFGCVMYAGFVFSQMA---VK--NV-VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS-VTMVS 295 (662)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~f~~~~---~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-~t~~~ 295 (662)
..+..+...|...|+.+.+.+.+.... .+ +. .........+...|++++|.+.+++. ... .|+. ..+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~--l~~--~P~~~~a~~~ 82 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQL--LDD--YPRDLLALKL 82 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHH--CCCcHHHHHH
Confidence 344445555555566666544444332 11 11 11222233456677888888888776 322 2332 23221
Q ss_pred HHHHHH----ccCCHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 006076 296 VLQACA----ALAALEQGKMIHGYILRRGLDS-ILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYG 367 (662)
Q Consensus 296 ll~a~~----~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 367 (662)
...+. ..+..+.+.+.+.. .....| .......+...+...|++++|...+++..+ .+...+..+...|.
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE 159 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 11122 23344444444433 111122 233444556677788888888888887653 34567777888888
Q ss_pred hcCChHHHHHHHHHHHHcCC-CCCH--hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHhhcC
Q 006076 368 VHGYGGKAIQIFKEMIYHGV-SPSP--ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY-A--CMVDLLGRAN 441 (662)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g 441 (662)
..|++++|..++++...... .|+. ..|..+...+...|++++|..+++.........+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 88888888888888776421 1222 234456667788888888888888875322111212111 1 2233333344
Q ss_pred CHHHHHHH---HHhc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C--------CCcchHHHHHHHHHh
Q 006076 442 KLEEAAKI---IEDL-RIEP---GPKVWGSLLGSCRIHCNVELAERASKRLFELE-P--------TNAGNYVLLADVYAA 505 (662)
Q Consensus 442 ~~~~A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~ 505 (662)
..+.+.++ .... +..| ..........++...|+.+.|...++.+.... . .........+.++.+
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 32222222 1111 1001 11222345666778889999999988876522 1 123455567778889
Q ss_pred cCChHHHHHHHHHHHhCC
Q 006076 506 ADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 506 ~g~~~~A~~~~~~m~~~~ 523 (662)
.|++++|.+.+.......
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999998877543
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.66 E-value=1.5e-05 Score=85.84 Aligned_cols=172 Identities=11% Similarity=0.047 Sum_probs=111.9
Q ss_pred HHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHH
Q 006076 343 LGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419 (662)
Q Consensus 343 ~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 419 (662)
.|...+.... ..+...||+|.-. ...|++.-|...|-+-... .+.+..+|..+.-.|....+++.|...|...+.
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 4555555433 3677788877665 5567777777776655543 234557777777778888888888888887752
Q ss_pred hcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHH----------H
Q 006076 420 EHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-------RIEPGPKVWGSLLGSCRIHCNVELAER----------A 481 (662)
Q Consensus 420 ~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~----------~ 481 (662)
+.| +...|....-.....|+.-++..+|..- +--|+...|-.-..-...+|+.++-.. .
T Consensus 879 ---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 879 ---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred ---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 444 4555655555556677777777777642 223566666555555556665554433 4
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006076 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519 (662)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (662)
.++.+.-.|++..+|.+.+...-..+.+++|.+.....
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44555667888888888888888888777777666543
No 91
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=0.00022 Score=69.82 Aligned_cols=384 Identities=13% Similarity=0.046 Sum_probs=214.8
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHH-HhcC-CccHHHHHHHHHhhCCCCCCCChhhHHHHHHHH
Q 006076 116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL-TLAG-RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193 (662)
Q Consensus 116 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~-~~~g-~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~ 193 (662)
..-...+..|...++-+.|.....+++..-..--+.|+.+. -+.| +-.++.--+.+.... . | ... ..|.+.
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvre---c-p--~aL-~~i~~l 170 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRE---C-P--MAL-QVIEAL 170 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHh---c-c--hHH-HHHHHH
Confidence 34445667777778888888888888775443334444333 3322 222332233333222 0 0 001 111111
Q ss_pred HhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHHcCC-----CCCHhHHHHHHHHHHHc
Q 006076 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF--GCVMYAGFVFSQMA-----VKNVVSWSAMIACYARN 266 (662)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~ 266 (662)
...+ +..+...--.|-...++|...+...-+.+|+.+ ++...|...|-... ..|+.....+...+...
T Consensus 171 l~l~-----v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 171 LELG-----VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred HHHh-----hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence 1111 111111111222223344433444445555544 44444444443222 23677778888888888
Q ss_pred CChhHHHHHHHHHhhhhCCCcCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 006076 267 GMAFEALELFREMIMESHDLCPNSVTMVSV-LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345 (662)
Q Consensus 267 g~~~~A~~~~~~m~~~~~~~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 345 (662)
|+.++|+..|++. + -+.|+..+-.-+ .-.+.+.|+.+....+...+.... +-+...|-.-........+++.|.
T Consensus 246 Gdn~~a~~~Fe~~--~--~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL 320 (564)
T KOG1174|consen 246 GDYFQAEDIFSST--L--CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERAL 320 (564)
T ss_pred cCchHHHHHHHHH--h--hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHH
Confidence 8888888888866 3 233443321111 111345667766666666554332 011111222222334456777777
Q ss_pred HHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc
Q 006076 346 CVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEH 421 (662)
Q Consensus 346 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 421 (662)
.+-++-.+ +++..|-.=...+.+.|+.++|.-.|+..+. +.| +...|..|+.+|...|.+.+|.-.-+...+.
T Consensus 321 ~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~- 397 (564)
T KOG1174|consen 321 NFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL- 397 (564)
T ss_pred HHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-
Confidence 77665543 3444554444567777888888888887776 454 4578888888888888888887766666543
Q ss_pred CCCCChHHHHHHH-HHHhh-cCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 006076 422 MIRPSVEHYACMV-DLLGR-ANKLEEAAKIIEDL-RIEPGP-KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497 (662)
Q Consensus 422 ~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (662)
++.+..+.+.+. ..+.- ..--++|..++++. .+.|+- ...+.+...|...|..+.+..++++.+...|+ ...++
T Consensus 398 -~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~ 475 (564)
T KOG1174|consen 398 -FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHN 475 (564)
T ss_pred -hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHH
Confidence 344555544442 22222 22336677777765 566753 44566667788888888888888888888776 46778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 006076 498 LLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.|++.+.....+.+|...|.....
T Consensus 476 ~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 476 HLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888888888888888888776553
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.65 E-value=7.9e-07 Score=87.19 Aligned_cols=244 Identities=13% Similarity=0.041 Sum_probs=160.4
Q ss_pred HHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 006076 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341 (662)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 341 (662)
-+.-.|.+..++.-.. . ....-..+..+...+.+++..+|..+.+ ...+.+.. .|.......+...+...++-
T Consensus 10 n~fy~G~Y~~~i~e~~-~--~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-L--KSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHCTT-HHHHCHHHH-C--HTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHhhhHHHHHHHhh-c--cCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 3445688888876554 2 2222222344555667778888876643 23333333 56655555554444333455
Q ss_pred HHHHHHHhhCC-CC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 006076 342 ELGQCVFDHMD-KR----DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416 (662)
Q Consensus 342 ~~A~~~~~~m~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 416 (662)
+.+..-+++.. ++ +....-.....|...|++++|++++.+- .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56666555443 32 2222222234466689999999988642 3556667788899999999999999999
Q ss_pred hHHhcCCCCChHH---HHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076 417 MRKEHMIRPSVEH---YACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 417 ~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (662)
|.+ +..|... ..+.+..+.-.+.+++|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|.
T Consensus 157 ~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 157 MQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 963 3444322 233344443345799999999999 34578889999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 006076 492 NAGNYVLLADVYAAADMW-DEVKRVKRLLEA 521 (662)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 521 (662)
++.+...++-+....|+. +.+.+.+.+++.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999999999999999988 667788888775
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.65 E-value=5.4e-05 Score=72.08 Aligned_cols=188 Identities=11% Similarity=0.079 Sum_probs=103.6
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHH
Q 006076 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKA 375 (662)
Q Consensus 299 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 375 (662)
.+...|+...+......+++.. +.|...+..-..+|...|++..|+.=+.... ..+..+.--+-..+...|+.+.+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 3444566666666666666543 3456666666777777777777765554433 45555666666677777888888
Q ss_pred HHHHHHHHHcCCCCCHhH-HH---HH---------HHHHhcCCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHH
Q 006076 376 IQIFKEMIYHGVSPSPIS-FV---SV---------LGACSHAGLVEEGKMLFESMRKEHMIRPS-----VEHYACMVDLL 437 (662)
Q Consensus 376 ~~~~~~m~~~g~~p~~~t-~~---~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~ 437 (662)
+...++-++ +.||... |. .| .......+.+.++.+-.+...+. .|. ...+..+-..+
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecc
Confidence 877777776 5676532 11 10 01112234444444444444321 222 12233333444
Q ss_pred hhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 438 GRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 438 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
...|++.+|++...+. .+.|| +.++.--..+|.....++.|+.-|+++.+.+|+|
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 5555666666555544 34443 4455555555555556666666666666666554
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.61 E-value=2e-05 Score=71.14 Aligned_cols=132 Identities=13% Similarity=0.030 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 436 (662)
..|....-+|.+|++++|...|++....-.-| -..||..+.-+..+.|+.+.|..+|++..+.. +........+...
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~ 182 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARL 182 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHH
Confidence 33333334444444444444444444321111 12344444444444455555555554444211 1123344444444
Q ss_pred HhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076 437 LGRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 437 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (662)
..+.|++-.|..+++.. ...++..+.-..|..-...||.+.+.+.-.++...-|.
T Consensus 183 ~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 183 HYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 55555555555554444 12234444333444444455555555554455555454
No 95
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.00038 Score=71.35 Aligned_cols=428 Identities=13% Similarity=0.093 Sum_probs=218.9
Q ss_pred CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCC--CCCHhhHHHHHHHH--hcCCChHHHHHH
Q 006076 27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEP--NPTQHTYELLLLSC--THHNSLSDALNV 102 (662)
Q Consensus 27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~p~~~~~~~ll~~~--~~~~~~~~a~~~ 102 (662)
.+++|.+.- +.+....+-.-+. ...-+-++++.+++++|+.+.+... ..+..-+ +=++| .+.+..++|...
T Consensus 27 e~e~a~k~~-~Kil~~~pdd~~a--~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~--fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 27 EYEEAVKTA-NKILSIVPDDEDA--IRCKVVALIQLDKYEDALKLIKKNGALLVINSFF--FEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred HHHHHHHHH-HHHHhcCCCcHhh--HhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh--HHHHHHHHHcccHHHHHHH
Confidence 666777766 6665443222222 4446667888889999987776211 1111111 22333 367788888777
Q ss_pred HHHHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCC
Q 006076 103 HSHLTDNGFDQDPF-LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181 (662)
Q Consensus 103 ~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p 181 (662)
+. |.+++.. +...-...+-+.|++++|..+++.+.+.+...+...+.+-+-.--.....+ .|... ...|
T Consensus 102 ~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~---~~q~v--~~v~ 171 (652)
T KOG2376|consen 102 LK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ---LLQSV--PEVP 171 (652)
T ss_pred Hh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH---HHHhc--cCCC
Confidence 76 3333332 444445566688889999999888866655555444433221111111111 22222 2334
Q ss_pred ChhhHHHHHHH---HHhCCCCccchHHHHHHHHHHHHhCCC-------C--ch-----hHHHHHHHHHHhcCCHHHHHHH
Q 006076 182 DRFTYTYVLKA---CVASSCGFSLLKHGKEIHASVLRHGYN-------G--IV-----HIMTTLIDMYARFGCVMYAGFV 244 (662)
Q Consensus 182 ~~~t~~~ll~~---~~~~~~~~~~~~~a~~~~~~~~~~g~~-------~--~~-----~~~~~li~~y~~~g~~~~A~~~ 244 (662)
..||..+.+. +...+. +..|.+++....+.+.+ . +. .+---|.-.+...|+-++|..+
T Consensus 172 -e~syel~yN~Ac~~i~~gk----y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 172 -EDSYELLYNTACILIENGK----YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred -cchHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 2345444432 234455 88888888877443210 0 11 1112344456678999999998
Q ss_pred HHcCCCC---CH----hHHHHHHHHHHHcCChh-HHHHHHHHHhhhhCCC----------cCCHHHHH-HHHHHHHccCC
Q 006076 245 FSQMAVK---NV----VSWSAMIACYARNGMAF-EALELFREMIMESHDL----------CPNSVTMV-SVLQACAALAA 305 (662)
Q Consensus 245 f~~~~~~---~~----~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~----------~p~~~t~~-~ll~a~~~~~~ 305 (662)
+...... |. +.-|.++..-....-++ .++..++.. ..... +-..+..+ .++..+. +.
T Consensus 247 y~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~--~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk 322 (652)
T KOG2376|consen 247 YVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ--VFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NK 322 (652)
T ss_pred HHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence 8877532 22 22333433221111122 222233222 00000 00011111 1111111 11
Q ss_pred HHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhc-C-ChHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHH
Q 006076 306 LEQGKMIHGYILRR-GLDSILPVVSALVTMYARC-G-KLELGQCVFDHMDK----RDVVSWNSLISSYGVHGYGGKAIQI 378 (662)
Q Consensus 306 ~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~-g-~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~ 378 (662)
.+.++++ .... +..|. ..+..++....++ . ....|..++....+ ...+.--+++......|+++.|+++
T Consensus 323 ~~q~r~~---~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 323 MDQVREL---SASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred HHHHHHH---HHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2222222 2222 11222 3333333333222 2 35566666655543 2344556667777788889888888
Q ss_pred HH--------HHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCC-CCChH----HHHHHHHHHhhcCCHHH
Q 006076 379 FK--------EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI-RPSVE----HYACMVDLLGRANKLEE 445 (662)
Q Consensus 379 ~~--------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~~~~----~~~~li~~~~~~g~~~~ 445 (662)
+. ...+.+..|-.+ ..+..-+.+.++.+.|..++....+.+.. .+... .+.-++..-.+.|+-++
T Consensus 399 l~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 88 555545555443 44555566666666666666655432211 12222 23333444457789999
Q ss_pred HHHHHHhc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076 446 AAKIIEDL-R-IEPGPKVWGSLLGSCRIHCNVELAERASKRL 485 (662)
Q Consensus 446 A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 485 (662)
|..+++++ . .++|..+...++.+|+.. +.+.|+.+-+++
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999888 3 456888888888888876 577777766554
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=0.00041 Score=73.46 Aligned_cols=220 Identities=12% Similarity=0.081 Sum_probs=132.0
Q ss_pred CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh------------c-CCCCCHhhHHHHHHHHhcC
Q 006076 27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS------------I-EPNPTQHTYELLLLSCTHH 93 (662)
Q Consensus 27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------------~-~~~p~~~~~~~ll~~~~~~ 93 (662)
++|.|.+.. ..+.+. +. |..|.+.+++..+++-|.-.+. + ...|+ .+=..+.......
T Consensus 743 ~MD~AfksI-~~IkS~--~v-----W~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 743 SMDAAFKSI-QFIKSD--SV-----WDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred cHHHHHHHH-HHHhhh--HH-----HHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 889888888 555443 22 5669999999888887765553 1 11122 2222223334577
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCC-cchHHHHHHHHHhcCCccHHHHHHHHH
Q 006076 94 NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT-IYVWNALFRALTLAGRGEEVLELYRRM 172 (662)
Q Consensus 94 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m 172 (662)
|.+++|+.++++-.+. ..|=..|-..|.+++|.++-+.-.+-. ..+|..-..-+-..++.+.|++.|++-
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 8999999999988764 334566778899999998876433211 134555555555667788888887753
Q ss_pred ----------hhCCCC-------CCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006076 173 ----------NGTGTG-------IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235 (662)
Q Consensus 173 ----------~~~~~g-------~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 235 (662)
+...++ -..|...|...-..+-..|+ ++.|..++..+.. |-+++...|-.
T Consensus 885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Ge----mdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGE----MDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccc----hHHHHHHHHHhhh---------hhhheeeEeec
Confidence 111000 00111222222222222333 5555554443331 33455555566
Q ss_pred CCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006076 236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279 (662)
Q Consensus 236 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (662)
|+.++|-++-++- .|......+..-|-..|++.+|+.+|.+.
T Consensus 952 Gk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 952 GKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred cCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7777777776653 35666777888888999999999998876
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.4e-05 Score=79.06 Aligned_cols=216 Identities=13% Similarity=0.082 Sum_probs=136.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChh----------HHHHHH
Q 006076 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV----------SWNSLI 363 (662)
Q Consensus 294 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~----------~~~~li 363 (662)
..+.++..+..+++.+.+-+...+... .++.-++....+|...|.+.++...-+...+..-. +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555666667777777777776665 45666666777777777766665544433221111 122234
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHhhcCC
Q 006076 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE-HYACMVDLLGRANK 442 (662)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~ 442 (662)
.+|...++++.|+..|.+.+.....||..+ +....+++....+... -+.|... -...-...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 466667788888888888666544444322 2223344444333332 1233321 11222566777888
Q ss_pred HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 443 LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 443 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
+.+|...|.++ ...| |...|..-..+|.+.|.+..|+.-.+..++++|+....|.-=+.++....+|+.|.+.|.+-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877 3334 667788888888888888888888888888888887778777777777788888888887766
Q ss_pred hCC
Q 006076 521 ARG 523 (662)
Q Consensus 521 ~~~ 523 (662)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 543
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=1.3e-05 Score=89.08 Aligned_cols=200 Identities=12% Similarity=0.096 Sum_probs=167.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 006076 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDK--------RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393 (662)
Q Consensus 322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (662)
+.+...|-..|......+++++|++++++... .-.-.|.++++.-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 34466777788888899999999999988763 12347888888888888888899999999883 333467
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC---CHHHHHHHHHHH
Q 006076 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP---GPKVWGSLLGSC 469 (662)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 469 (662)
|..|+..|.+.+..++|.++++.|.++++ .....|..+++.+.+...-+.|..++.+. ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999998875 67889999999999999999999999876 2223 344455556666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 525 (662)
.++|+.+++..+|+..+.-.|.-...|..++++=.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999998899999999999999999999999999987763
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=1e-07 Score=59.51 Aligned_cols=33 Identities=36% Similarity=0.339 Sum_probs=27.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 006076 217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA 249 (662)
Q Consensus 217 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 249 (662)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.56 E-value=0.00031 Score=72.41 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=41.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC-CCch--hHHHHHHHH
Q 006076 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL-DSIL--PVVSALVTM 334 (662)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~--~~~~~li~~ 334 (662)
.+...+...|++++|.+.+++. .... +.+...+..+..++...|++++|...++...+... .++. ..+..+...
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~a--l~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRA--LELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH--HhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 3344555566666666666555 2211 11233334444444555555555555554444321 1111 123344445
Q ss_pred HHhcCChHHHHHHHhhC
Q 006076 335 YARCGKLELGQCVFDHM 351 (662)
Q Consensus 335 y~~~g~~~~A~~~~~~m 351 (662)
+...|++++|..+|++.
T Consensus 196 ~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 196 YLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 55555555555555544
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=9e-06 Score=78.34 Aligned_cols=179 Identities=12% Similarity=-0.010 Sum_probs=117.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh----H
Q 006076 324 ILPVVSALVTMYARCGKLELGQCVFDHMDK--RD-V---VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI----S 393 (662)
Q Consensus 324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 393 (662)
....+..+...|.+.|++++|...|+++.+ |+ . .+|..+..+|...|++++|+..|+++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 455666677777788888888888876653 32 1 35666777788888888888888888773 34322 3
Q ss_pred HHHHHHHHhcC--------CCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 006076 394 FVSVLGACSHA--------GLVEEGKMLFESMRKEHMIRPSV-EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464 (662)
Q Consensus 394 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 464 (662)
+..+..++... |+.++|.+.++.+.+.+ |+. ..+..+.... ...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMD----YLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHH----HHHHHH-----------HHHHHH
Confidence 44444445443 56777777777776542 332 2222221110 000000 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 465 LLGSCRIHCNVELAERASKRLFELEPTN---AGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
+...+...|+.++|...++++++..|++ +..+..++.+|.+.|++++|...++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566888999999999999999987764 468889999999999999999999988754
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.4e-07 Score=58.97 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=24.9
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 006076 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352 (662)
Q Consensus 320 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 352 (662)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.52 E-value=0.00017 Score=84.52 Aligned_cols=296 Identities=9% Similarity=-0.058 Sum_probs=190.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCC----CC----C--Hh--HHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH---
Q 006076 226 TTLIDMYARFGCVMYAGFVFSQMA----VK----N--VV--SWSAMIACYARNGMAFEALELFREMIMESHDLCPNS--- 290 (662)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~f~~~~----~~----~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~--- 290 (662)
......+...|++++|...+.... .. + .. ....+...+...|++++|...+++. ...--..+.
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a--l~~~~~~~~~~~ 490 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELA--LAELPLTWYYSR 490 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--HhcCCCccHHHH
Confidence 344555667899999888886542 11 1 11 1122334566889999999999887 332111121
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHHHhCC---CC--chhHHHHHHHHHHhcCChHHHHHHHhhCCC-------C---
Q 006076 291 -VTMVSVLQACAALAALEQGKMIHGYILRRGL---DS--ILPVVSALVTMYARCGKLELGQCVFDHMDK-------R--- 354 (662)
Q Consensus 291 -~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~--- 354 (662)
...+.+...+...|+++.|...+.......- .+ .......+...+...|++++|...+++... +
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 2334445556788999999999988865321 11 123455667788899999999998776532 1
Q ss_pred -ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHH
Q 006076 355 -DVVSWNSLISSYGVHGYGGKAIQIFKEMIYH--GVSPS--PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429 (662)
Q Consensus 355 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 429 (662)
....+..+...+...|++++|...+.+.... ...+. ..++..+.......|+.++|.+.++.......-......
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 1223445566677789999999999887653 11222 234444556777899999999998887532111111111
Q ss_pred H-----HHHHHHHhhcCCHHHHHHHHHhcCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCC
Q 006076 430 Y-----ACMVDLLGRANKLEEAAKIIEDLRIE--PGP----KVWGSLLGSCRIHCNVELAERASKRLFELE------PTN 492 (662)
Q Consensus 430 ~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~ 492 (662)
+ ...+..+...|+.+.|..++...... ... ..+..+..++...|+.++|...++++.+.. +..
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1 11224456689999999998776311 111 113456677888899999999999987642 122
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 493 AGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
..++..++.+|.+.|+.++|...+.+..+..
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3467788899999999999999999887643
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=1.3e-05 Score=74.16 Aligned_cols=147 Identities=9% Similarity=0.064 Sum_probs=109.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006076 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442 (662)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 442 (662)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+.. +.+...|..|...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC
Confidence 3456777777665443322211 11 0 1223566677777777776543 5678889999999999999
Q ss_pred HHHHHHHHHhc-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 006076 443 LEEAAKIIEDL-RIEP-GPKVWGSLLGSC-RIHCN--VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517 (662)
Q Consensus 443 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 517 (662)
+++|...|++. ...| +...+..+..++ ...|+ .++|..+++++++.+|+++.++..|+..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887 4455 667777777764 66676 5899999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 006076 518 LLEARG 523 (662)
Q Consensus 518 ~m~~~~ 523 (662)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 988643
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=0.00028 Score=66.11 Aligned_cols=124 Identities=12% Similarity=0.040 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006076 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335 (662)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 335 (662)
+|.-...+.+.|+++.|.+.+..|+ .+..-..|++|...+.-. -..+++..+.+-+..+...+. -...++..++-.|
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmP-PRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMP-PRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCC-CcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 4444455678889999999998886 333445677887654322 123345555555555655543 3456777788889
Q ss_pred HhcCChHHHHHHHhhCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006076 336 ARCGKLELGQCVFDHMDKR-----DVVSWNSLISSYGVHGYGGKAIQIFKEM 382 (662)
Q Consensus 336 ~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m 382 (662)
||..-++.|.+++.+-..- +...|+.+=..-...-..++|++-+..+
T Consensus 321 CKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999998888765532 3333443222222233455555544443
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.45 E-value=0.00035 Score=81.87 Aligned_cols=325 Identities=10% Similarity=0.030 Sum_probs=186.5
Q ss_pred hhcCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCC----CCChh--hHHHHHHHHH
Q 006076 125 YSHFDSVDDARHVFDKTRR----RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI----RSDRF--TYTYVLKACV 194 (662)
Q Consensus 125 y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~----~p~~~--t~~~ll~~~~ 194 (662)
....|+++.+...++.++. .+..........+...|++++|..++......-... .|... .....-..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4456677777777776642 122222333344456678888887777664320000 11112 1222223344
Q ss_pred hCCCCccchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHcCCC-------CC--HhHHHHHHH
Q 006076 195 ASSCGFSLLKHGKEIHASVLRHGYNGI----VHIMTTLIDMYARFGCVMYAGFVFSQMAV-------KN--VVSWSAMIA 261 (662)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------~~--~~~~~~li~ 261 (662)
..++ ++.+...+....+.--..+ ....+.+...+...|++++|...+++... +. ..+++.+..
T Consensus 464 ~~g~----~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 464 NDGD----PEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred hCCC----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 5677 8888887777765311111 24666777777888888888887776531 11 234455566
Q ss_pred HHHHcCChhHHHHHHHHHhhh--hCCCc--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC--CCC--chhHHHHHH
Q 006076 262 CYARNGMAFEALELFREMIME--SHDLC--P-NSVTMVSVLQACAALAALEQGKMIHGYILRRG--LDS--ILPVVSALV 332 (662)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m~~~--~~~~~--p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~--~~~~~~~li 332 (662)
.+...|++++|...+.+.... ..+.. | ....+..+...+...|++++|...+....... ..+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 677788888888877765311 11211 1 22334444555666788888888877765431 111 233444566
Q ss_pred HHHHhcCChHHHHHHHhhCCC----C-ChhHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---hHHHHHHH
Q 006076 333 TMYARCGKLELGQCVFDHMDK----R-DVVSWN-----SLISSYGVHGYGGKAIQIFKEMIYHGVSPSP---ISFVSVLG 399 (662)
Q Consensus 333 ~~y~~~g~~~~A~~~~~~m~~----~-~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~ 399 (662)
..+...|+.+.|...+++... . ....|. ..+..+...|+.+.|...+............ .....+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 677788888888877766531 1 111111 1224445578888888887665432111111 11345566
Q ss_pred HHhcCCCHHHHHHHHHHhHHh---cCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 400 ACSHAGLVEEGKMLFESMRKE---HMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
++...|+.++|...++..... .|..+ ...+...+..+|.+.|+.++|...+.+.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777888888888888876532 22222 2345667778888889988888888776
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.44 E-value=7.8e-06 Score=71.55 Aligned_cols=122 Identities=11% Similarity=0.033 Sum_probs=83.7
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC
Q 006076 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI 455 (662)
Q Consensus 377 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 455 (662)
.+|++..+ +.|+. +.....++...|++++|...|+...... +.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34455444 34543 4445566677788888888777776432 346677777777788888888888887776 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006076 456 EP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504 (662)
Q Consensus 456 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (662)
.| +...|..+..++...|+.++|...+++++++.|+++..+.....+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33 66777777777788888888888888888888887777766655543
No 108
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.42 E-value=6.7e-06 Score=70.71 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=100.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (662)
+....-.+...+...|++++|..+|+-. .+.| +..-|-.|...|...|++++|+..|.++..++|+|+.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556667777888999999999999987 3455 6677899999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHH
Q 006076 504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK 567 (662)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 567 (662)
...|+.+.|.+.|+..... . ..+|+..++.+++......+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~----------~-------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI----------C-------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH----------h-------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999987742 1 246777777777777666554
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.41 E-value=0.00029 Score=76.29 Aligned_cols=379 Identities=14% Similarity=0.011 Sum_probs=214.7
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHH
Q 006076 116 FLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA 192 (662)
Q Consensus 116 ~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~ 192 (662)
..|..|...|...-+...|.+.|++..+ .|..+|.++...|++...++.|..+.-..-+. -+.-...++.+-.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk---a~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK---APAFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh---chHHHHHhhhhhcc
Confidence 4688888888888888899999986554 46678999999999999999999883332221 11111222322222
Q ss_pred --HHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHH---HHHHHHHcC
Q 006076 193 --CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA---MIACYARNG 267 (662)
Q Consensus 193 --~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g 267 (662)
+...++ ...+..-++..++.. +.|...|..|..+|.++|++..|.++|++...-++.+|-. ....-+..|
T Consensus 570 ~yyLea~n----~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 570 PYYLEAHN----LHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred ccccCccc----hhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 222233 566666666666554 5678899999999999999999999998876544333322 222346688
Q ss_pred ChhHHHHHHHHHhhhhC----CCcCCHHHHHHHHHHHHccCCHHHHHHHHHHH-------HHhCCCCchhHHHHHHHHHH
Q 006076 268 MAFEALELFREMIMESH----DLCPNSVTMVSVLQACAALAALEQGKMIHGYI-------LRRGLDSILPVVSALVTMYA 336 (662)
Q Consensus 268 ~~~~A~~~~~~m~~~~~----~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~-------~~~g~~~~~~~~~~li~~y~ 336 (662)
.+.+|+..+........ +..--..++..+...+...|-...+..+++.. .......+...|-.+
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----- 719 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----- 719 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH-----
Confidence 89999888876641111 11112233333333333333333333333332 222222222222222
Q ss_pred hcCChHHHHHHHhhCCCCChh--HHHHHHHH-HHhcCCh---H---HHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----
Q 006076 337 RCGKLELGQCVFDHMDKRDVV--SWNSLISS-YGVHGYG---G---KAIQIFKEMIYHGVSPSPISFVSVLGACSH---- 403 (662)
Q Consensus 337 ~~g~~~~A~~~~~~m~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---- 403 (662)
.+|..+|-... ||.+ .+..++.. +-..+.. + -+.+.+-.-++ +..+..+|..+...+.+
T Consensus 720 -----sdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 720 -----SDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred -----hHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHH
Confidence 23334454444 4422 11111111 1111111 1 11111211111 12223344333332221
Q ss_pred CC----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHH
Q 006076 404 AG----LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVEL 477 (662)
Q Consensus 404 ~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~ 477 (662)
.| +...|...+...++.. ..+...|+.|.-+ ...|.+.-|..-|-+- ..+....+|..+.-.|....+++-
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHH
Confidence 22 2235666666555321 2234455555444 6667777777766554 223467788888888888899999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (662)
|...+.+...++|.|...+.-...+-...|+.-++..+|..
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999998887777766666777888888777765
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=0.00075 Score=71.59 Aligned_cols=359 Identities=13% Similarity=0.072 Sum_probs=215.4
Q ss_pred CChhHHHHHH--HHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCC--------CCC
Q 006076 113 QDPFLVTKLI--NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI--------RSD 182 (662)
Q Consensus 113 ~~~~~~~~li--~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~--------~p~ 182 (662)
-|..+..+++ +.|..-|++|.|.+-.+-+. +-..|..|.+.+.+..+.+-|.-.+-.|.... |. .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR-gaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR-GARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh-hHHHHHHHHhCCc
Confidence 4666777776 45677899999888776664 44679999999999888888877777765321 11 122
Q ss_pred h-hhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC-CHhHHHHHH
Q 006076 183 R-FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI 260 (662)
Q Consensus 183 ~-~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li 260 (662)
. ..-.++| ...+|- +++|+.++.+..+.. .|=..|...|.+++|.++-+.-..- =..||..-.
T Consensus 801 e~eakvAvL--AieLgM----lEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA 865 (1416)
T KOG3617|consen 801 EDEAKVAVL--AIELGM----LEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA 865 (1416)
T ss_pred chhhHHHHH--HHHHhh----HHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH
Confidence 1 1112222 223444 999999999887764 3445678889999998886543211 123455555
Q ss_pred HHHHHcCChhHHHHHHHHHhh--------hhC---------CCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 006076 261 ACYARNGMAFEALELFREMIM--------ESH---------DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323 (662)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~m~~--------~~~---------~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 323 (662)
.-+-..++.+.|++.|++... ..+ .-.-|...|.....-.-..|+.+.|..++..+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 555566778888888775410 000 0012333344444445566777777777665543
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 006076 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403 (662)
Q Consensus 324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (662)
|-+++...+-.|+.++|.++-++- .|......+..-|-..|++.+|..+|.+.+. |...|+.|-.
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKE 1005 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKE 1005 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHh
Confidence 344566666678888887776643 4556666788889999999999999887654 2233333222
Q ss_pred ---------------CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhcC----------C--
Q 006076 404 ---------------AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII-EDLR----------I-- 455 (662)
Q Consensus 404 ---------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~----------~-- 455 (662)
..+.-.|-.+|++. |. -...-+..|-++|.+.+|+++- +.-. +
T Consensus 1006 nd~~d~L~nlal~s~~~d~v~aArYyEe~----g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~ 1076 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEEL----GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA 1076 (1416)
T ss_pred cCHHHHHHHHHhhcCchhHHHHHHHHHHc----ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC
Confidence 22333444455433 11 1123456678888888888762 2111 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------------h-cCCCC---------cchHHHHHHHHH
Q 006076 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLF---------------------E-LEPTN---------AGNYVLLADVYA 504 (662)
Q Consensus 456 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---------------------~-~~p~~---------~~~~~~l~~~~~ 504 (662)
..|+...+--..-+..+.++++|..++-... + +-|.. ......+++.+.
T Consensus 1077 ~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~ 1156 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCL 1156 (1416)
T ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHH
Confidence 2355555555555566667777665543221 1 11211 125667899999
Q ss_pred hcCChHHHHHHHHH
Q 006076 505 AADMWDEVKRVKRL 518 (662)
Q Consensus 505 ~~g~~~~A~~~~~~ 518 (662)
++|.+..|.+-|.+
T Consensus 1157 qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1157 QQGAYHAATKKFTQ 1170 (1416)
T ss_pred hccchHHHHHHHhh
Confidence 99998888776543
No 111
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00081 Score=68.37 Aligned_cols=234 Identities=13% Similarity=0.059 Sum_probs=150.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHHhCCCC--c----hhHH
Q 006076 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV-SVLQACAALAALEQGKMIHGYILRRGLDS--I----LPVV 328 (662)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~----~~~~ 328 (662)
.-.+..+.-+..+++.|++-+... .. +. ...||. ..-.++...|...+....-...++.|.+. + ....
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a--~e--l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~ 301 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKA--LE--LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL 301 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH--Hh--Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH
Confidence 445666666677777888777765 22 22 333443 34445666776666665555555544221 0 0111
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhcCC
Q 006076 329 SALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI-SFVSVLGACSHAG 405 (662)
Q Consensus 329 ~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g 405 (662)
..+..+|.+.++++.|...|.+... ++.. ...+....++++.......- +.|... -...=.+.+.+.|
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 2244478888999999999987542 2211 12233445566666555544 344431 1222356778899
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006076 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASK 483 (662)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 483 (662)
++..|...+.++++.. +-|...|..-.-+|.+.|.+.+|+.=-+.. ...|+ ...|.-=..++....+++.|...|.
T Consensus 373 dy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred CHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998653 557889999999999999999998766554 33444 3445555556666678999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHh
Q 006076 484 RLFELEPTNAGNYVLLADVYAA 505 (662)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~~~~~ 505 (662)
+.++.+|++......+.+++..
T Consensus 451 eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 451 EALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHhcCchhHHHHHHHHHHHHH
Confidence 9999999987666655555544
No 112
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=9.6e-05 Score=69.08 Aligned_cols=302 Identities=15% Similarity=0.142 Sum_probs=168.1
Q ss_pred hHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--CCHhHHHH-HHH
Q 006076 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--KNVVSWSA-MIA 261 (662)
Q Consensus 185 t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~ 261 (662)
-+.+++..+.+... +..+.+++....+.. +.+....+.|...|-...++..|-..++++.. |...-|.. -..
T Consensus 12 eftaviy~lI~d~r----y~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 12 EFTAVVYRLIRDAR----YADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQ 86 (459)
T ss_pred chHHHHHHHHHHhh----HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 34555555555555 777777776655553 33455566677777777888888888877643 22222221 123
Q ss_pred HHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHH--HccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006076 262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC--AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339 (662)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 339 (662)
.+-+.+.+.+|+++...| ... |+...-..-+.+. .+.+++..++.+.++....| +..+.+...-...+.|
T Consensus 87 SLY~A~i~ADALrV~~~~--~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLL--LDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHhcccHHHHHHHHHh--cCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 455677778888887777 221 2222211112221 23344545554444432211 2222333333344566
Q ss_pred ChHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHH----
Q 006076 340 KLELGQCVFDHMDK----RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK---- 411 (662)
Q Consensus 340 ~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~---- 411 (662)
+.+.|.+-|+...+ .....||.-+.-| +.|+.+.|+++..+..+.|++-.+.. + .|...++.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPEl-g--------IGm~tegiDvrs 228 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPEL-G--------IGMTTEGIDVRS 228 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCcc-C--------ccceeccCchhc
Confidence 66666666665543 2344555444333 34556666666666666554421110 0 00000000
Q ss_pred -----HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006076 412 -----MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR----IEPGPKVWGSLLGSCRIHCNVELAERAS 482 (662)
Q Consensus 412 -----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 482 (662)
.+.... -+..+|.-...+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++..+.+-+
T Consensus 229 vgNt~~lh~Sa--------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KL 299 (459)
T KOG4340|consen 229 VGNTLVLHQSA--------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKL 299 (459)
T ss_pred ccchHHHHHHH--------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHH
Confidence 000000 02233334445678899999999999995 34577887655432 2346677777788
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076 483 KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (662)
.-+++++|-.+.++..+.-+|++..-++-|..++-+
T Consensus 300 qFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 300 QFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 888899987788999999999999999999888754
No 113
>PLN02789 farnesyltranstransferase
Probab=98.35 E-value=0.00016 Score=71.93 Aligned_cols=176 Identities=11% Similarity=0.052 Sum_probs=103.4
Q ss_pred hHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076 341 LELGQCVFDHMDK---RDVVSWNSLISSYGVHGYG--GKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLF 414 (662)
Q Consensus 341 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (662)
++++...++++.+ .+..+|+.....+.+.|+. ++++.+++++.+. .| |..+|....-++.+.|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555544432 2334455444344444432 4556666666653 33 3455655555666666666666666
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhc---CC----HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHH
Q 006076 415 ESMRKEHMIRPSVEHYACMVDLLGRA---NK----LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH----CNVELAERA 481 (662)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~ 481 (662)
+.+.+.. +.+...|+.....+.+. |. .++++++..++ ...| |...|+-+...+... ++..+|...
T Consensus 166 ~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 6666432 23444555544444333 22 23555555333 4444 667788888887763 344668888
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcC------------------ChHHHHHHHHHHH
Q 006076 482 SKRLFELEPTNAGNYVLLADVYAAAD------------------MWDEVKRVKRLLE 520 (662)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 520 (662)
+.++...+|.++.+...|+++|+... ..++|.++++.+.
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 88888888988888889999998632 2356777777773
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00022 Score=71.71 Aligned_cols=177 Identities=16% Similarity=0.071 Sum_probs=125.8
Q ss_pred CChHHHHHHHhhCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 006076 339 GKLELGQCVFDHMDK------RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412 (662)
Q Consensus 339 g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 412 (662)
.++.+++..-++++. |+...+...+.+.........+-.++.+-.+. .-...-|..-+ .....|.+++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHH
Confidence 356666666677763 45556666666544433333333333222221 11122333333 4456788999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076 413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEP 490 (662)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (662)
.++.+.+. .+-|+.......+.+.+.|+.++|.+.++++ ...|+ ...+-++..++.+.|+..+|...++.....+|
T Consensus 328 ~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 99998764 3567778888889999999999999999887 45665 67788888999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 491 TNAGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
+|+..|..|+.+|...|+..+|...+.++-
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999998888888776655
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.29 E-value=0.00012 Score=67.82 Aligned_cols=155 Identities=9% Similarity=0.118 Sum_probs=114.4
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 006076 332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411 (662)
Q Consensus 332 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 411 (662)
+-.|.+.|+++.+....+.+..|. ..|...++.++++..+++..... +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888777655544433221 01223566778888888877742 445677888888999999999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHH-hhcCC--HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006076 412 MLFESMRKEHMIRPSVEHYACMVDLL-GRANK--LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLF 486 (662)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (662)
..|+...+.. +.+...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++++
T Consensus 94 ~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887532 34678888888864 67777 59999999988 4455 66778888889999999999999999999
Q ss_pred hcCCCCcchHH
Q 006076 487 ELEPTNAGNYV 497 (662)
Q Consensus 487 ~~~p~~~~~~~ 497 (662)
++.|.+..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99887655443
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.28 E-value=1.3e-05 Score=70.07 Aligned_cols=107 Identities=7% Similarity=-0.061 Sum_probs=91.4
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELE 489 (662)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (662)
.+++...+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34554442 3444 4667788899999999999999987 4444 77889999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 490 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
|+++..+..++.++...|++++|...++......
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999887643
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=5.3e-05 Score=79.36 Aligned_cols=209 Identities=11% Similarity=0.001 Sum_probs=133.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCChH
Q 006076 296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD--KRDVVSWNSLISSYGVHGYGG 373 (662)
Q Consensus 296 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~ 373 (662)
+...+.+.|-...|..+++.+ ..+...|.+|...|+..+|..+..+-. +||...|..+.+......-++
T Consensus 404 laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 334445555566666665543 234456666666666666666555433 355666666666665555666
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
+|.++++.-... .-..+.....+.++++++.+.|+.-.+.+ +-...+|-.+.-+..++++++.|.+.|...
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 666666543221 11111111223567777777776655433 224566777777777888888888888765
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 454 -RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 454 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
...|| ...||++-.+|.+.++..+|...++++++.+-++...+....-...+.|.|++|.+.+..+.+.
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 45664 4668888888888888888888888888877666666666666677888888888888877653
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=4.9e-05 Score=79.57 Aligned_cols=190 Identities=20% Similarity=0.218 Sum_probs=159.7
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 006076 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399 (662)
Q Consensus 320 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (662)
+++|-...-..+...+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||+.-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555667778899999999999999999976 6788899999999999999999988877 4889999999999
Q ss_pred HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 006076 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVEL 477 (662)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 477 (662)
..-...-+++|.++++....+ .-..+.....+.++++++.+.++.- .+.| -..+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999999876532 1112222334478999999998854 4455 56789888888899999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
|...|.+...++|++...++.+..+|.+.|+-.+|...+++..+-+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999887663
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.24 E-value=8.2e-05 Score=68.80 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=92.3
Q ss_pred CCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHH
Q 006076 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSL 465 (662)
Q Consensus 388 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 465 (662)
.|+......+-.++...|+-+....+....... -+.|......++....+.|++.+|...+++. +-+||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 444333344555666667777777666665422 2345556666777777788888888777776 334577777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
.-+|.+.|++++|...+.+++++.|.++..++.|+-.|.-.|+.+.|..++......
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 777888888888888888888888877777788877777788888887777766543
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.24 E-value=8.9e-05 Score=71.40 Aligned_cols=182 Identities=11% Similarity=-0.010 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hh---HH
Q 006076 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-S-ILPVVSALVTMYARCGKLELGQCVFDHMDK--RD-VV---SW 359 (662)
Q Consensus 288 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~---~~ 359 (662)
.....+......+...|+++.|...++.+++.... | ....+..+...|.+.|++++|...|+++.+ |+ .. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777778889999999999999999876432 1 124667889999999999999999998863 32 22 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHH
Q 006076 360 NSLISSYGVH--------GYGGKAIQIFKEMIYHGVSPSPI-SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430 (662)
Q Consensus 360 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 430 (662)
..+..++.+. |+.++|.+.|+++... .|+.. ....+..... . .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH---------HHHH
Confidence 5566666654 7889999999999884 45542 2211111100 0 0000 0112
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076 431 ACMVDLLGRANKLEEAAKIIEDL----RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490 (662)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (662)
..+...|.+.|++++|...+++. +-.| ....|..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667788999999999888876 2223 356788899999999999999998888776555
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.23 E-value=0.00045 Score=77.46 Aligned_cols=224 Identities=14% Similarity=0.160 Sum_probs=173.6
Q ss_pred hhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHh-CCC---CchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC-C-HhHH
Q 006076 183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH-GYN---GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-N-VVSW 256 (662)
Q Consensus 183 ~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~ 256 (662)
+..|..-+......++ ++.|+++.+++++. ++. --..+|.+++++-..-|.-+...++|++..+- | ...|
T Consensus 1458 Si~WI~YMaf~LelsE----iekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSE----IEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred chHHHHHHHHHhhhhh----hHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 4456666666667777 88899888888764 221 12467888888888888888899999988643 3 4568
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q 006076 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-SILPVVSALVTMY 335 (662)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y 335 (662)
..|...|.+.+..++|.++|+.|. +.-+ -....|...+..+.+...-+.|..++.++.+.-.. ..+......+.+-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~-KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLML-KKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHH-HHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 889999999999999999999995 3333 45667888888888999999999999998876322 2466777788888
Q ss_pred HhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhcCCCHHHH
Q 006076 336 ARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGLVEEG 410 (662)
Q Consensus 336 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a 410 (662)
.++|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-. ..|.-.|..-.+.|+-+.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 999999999999998874 35678999999999999999999999999999888865 4566666555555654444
Q ss_pred HHH
Q 006076 411 KML 413 (662)
Q Consensus 411 ~~~ 413 (662)
..+
T Consensus 1691 E~V 1693 (1710)
T KOG1070|consen 1691 EYV 1693 (1710)
T ss_pred HHH
Confidence 333
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.23 E-value=0.00011 Score=80.56 Aligned_cols=140 Identities=11% Similarity=0.040 Sum_probs=112.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 006076 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432 (662)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 432 (662)
.++..+-.|.....+.|..++|..+++...+ +.||. .....+..++.+.+.+++|....++..... +-+......
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHH
Confidence 3477788888888999999999999999988 67876 456677788899999999999999887532 346777888
Q ss_pred HHHHHhhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 006076 433 MVDLLGRANKLEEAAKIIEDLR-IEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497 (662)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (662)
+..++.+.|++++|..+|++.- -.| +..+|.++..++...|+.++|...|+++++...+-...|+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 8889999999999999999883 234 4788888999999999999999999999887654444444
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.0002 Score=66.28 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=97.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 006076 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439 (662)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 439 (662)
..+-..+...|+.+....+....... ..-|..............|++.+|...|.+...- -++|...|+.+.-.|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHH
Confidence 33445555666666666655554331 1112233334566666677777777777776532 35567777777777777
Q ss_pred cCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 006076 440 ANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517 (662)
Q Consensus 440 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 517 (662)
.|++++|..-|.+. .+.| ++...+.|...+.-.|+.+.|+.++.......+.+..+-..|.-+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777666655 3333 455666777777777777777777777777666666677777777777777777766643
No 124
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=3.3e-06 Score=53.53 Aligned_cols=35 Identities=34% Similarity=0.622 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 391 (662)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 125
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.15 E-value=0.021 Score=62.02 Aligned_cols=410 Identities=14% Similarity=0.118 Sum_probs=212.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHh--hcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHH
Q 006076 93 HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY--SHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLE 167 (662)
Q Consensus 93 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y--~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 167 (662)
.+++..|.+....+.+.. |+. .|...+.++ .|.|+.++|..+++.... .|..|...+-..|...|+.++|..
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 455666666666665542 222 233333333 366777777777765433 255667777777777777777777
Q ss_pred HHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------
Q 006076 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC---------- 237 (662)
Q Consensus 168 l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------- 237 (662)
+|++.... -|+..-...+..++.+.++ +.+-.++--++.+ .++.+.+.+=++++.+...-.
T Consensus 99 ~Ye~~~~~----~P~eell~~lFmayvR~~~----yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 99 LYERANQK----YPSEELLYHLFMAYVREKS----YKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHhh----CCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 77777643 5566666666677777666 5544444434333 234455555555555543311
Q ss_pred HHHHHHHHHcCCCCC--HhH---HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHH
Q 006076 238 VMYAGFVFSQMAVKN--VVS---WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI 312 (662)
Q Consensus 238 ~~~A~~~f~~~~~~~--~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~ 312 (662)
+.-|.+.++.+.+.+ ..+ .-.-...+-..|++++|++++..-. ...-..-+...-+.-+..+...+++.+..++
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~l-a~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITL-AEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 233555555554433 111 1111223345677888888884321 2222223444445566677778888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHh----------------cCChHHHHHHHhhCC---CCChh-HHHHHHHHHHhcCCh
Q 006076 313 HGYILRRGLDSILPVVSALVTMYAR----------------CGKLELGQCVFDHMD---KRDVV-SWNSLISSYGVHGYG 372 (662)
Q Consensus 313 ~~~~~~~g~~~~~~~~~~li~~y~~----------------~g~~~~A~~~~~~m~---~~~~~-~~~~li~~~~~~g~~ 372 (662)
-.+++..|.+. |...++.+.+ .+.++...+..++.. .+++. ++--+..-+-.-|+.
T Consensus 249 ~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ 324 (932)
T KOG2053|consen 249 SSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDS 324 (932)
T ss_pred HHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCCh
Confidence 88887776432 4443333322 122222222222221 12222 222222223345777
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChH-------HHHHHHHHHhhcCC---
Q 006076 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE-------HYACMVDLLGRANK--- 442 (662)
Q Consensus 373 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~--- 442 (662)
++++-.|-+- -|-.| .+..=+..|...=..+.-..++...... .++.. -+.+.+....-.|.
T Consensus 325 ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~ 396 (932)
T KOG2053|consen 325 EEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEK 396 (932)
T ss_pred HHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhcccc
Confidence 7765554332 22222 1222222222222222223333322211 11111 12222222222221
Q ss_pred --HHHHHHHHHhc------C------CCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCcchH
Q 006076 443 --LEEAAKIIEDL------R------IEPGP---------KVWGSLLGSCRIHCNVE---LAERASKRLFELEPTNAGNY 496 (662)
Q Consensus 443 --~~~A~~~~~~m------~------~~p~~---------~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~ 496 (662)
-+.-..++.+. + .-|.. .+-+.|+..|.+.++.. +|+-+++..+...|.|+..-
T Consensus 397 l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~K 476 (932)
T KOG2053|consen 397 LPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTK 476 (932)
T ss_pred CChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHH
Confidence 11112222111 1 11221 24467788898888754 56677777788889998888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCcCC
Q 006076 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKV 527 (662)
Q Consensus 497 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 527 (662)
..|+.+|+-.|-+..|.++++.+.-++++.+
T Consensus 477 LlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 477 LLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 8999999999999999999999987777643
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0033 Score=58.41 Aligned_cols=245 Identities=11% Similarity=0.035 Sum_probs=114.7
Q ss_pred hcCCHHHHHHHHHcCC-C-CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHH-HH
Q 006076 234 RFGCVMYAGFVFSQMA-V-KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ-GK 310 (662)
Q Consensus 234 ~~g~~~~A~~~f~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~-a~ 310 (662)
-.|.+..+...-.... . .++..-.-|-.+|...|.+...+. ++ . .+-.|....+..+-.....-++.+. -.
T Consensus 20 Y~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI--~-~~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EI--K-EGKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cc--c-cccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 3455555554433322 2 344444445666777776544322 22 1 1213333333333333333333322 23
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006076 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390 (662)
Q Consensus 311 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 390 (662)
.+.+.+.......+......-...|.+.|++++|.+.......-+... .=+..+.+..+.+-|.+.+++|++- -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAA--LNVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 344444444444443333334445667777777777766633222222 2233445566667777777777652 24
Q ss_pred HhHHHHHHHHHhc----CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHH
Q 006076 391 PISFVSVLGACSH----AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGS 464 (662)
Q Consensus 391 ~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 464 (662)
..|.+.|.+++.+ .+.+.+|.-+|++|.++ .+|+..+.+-+..+....|++++|..++++. .-..++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 4555555554432 23455555566655432 3455555555555555555555555555554 11223344333
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhcCCC
Q 006076 465 LLGSCRIHCN-VELAERASKRLFELEPT 491 (662)
Q Consensus 465 ll~~~~~~g~-~~~a~~~~~~~~~~~p~ 491 (662)
++..-...|. .+.-.+...++....|.
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 3333333332 23333444444444444
No 127
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.00074 Score=69.25 Aligned_cols=209 Identities=14% Similarity=0.119 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006076 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREM 279 (662)
Q Consensus 203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (662)
+.+|.-.|+..++.. +.+...|--|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|++.|+.-
T Consensus 301 L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKW 379 (579)
T ss_pred chHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 777777777777765 55677777777777777777777777766543 35667777777888888888888887766
Q ss_pred hhhhCC-----CcC---CHHHHHHHHHHHHccCCHHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 006076 280 IMESHD-----LCP---NSVTMVSVLQACAALAALEQGKMIHGYI-LRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350 (662)
Q Consensus 280 ~~~~~~-----~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 350 (662)
+ ... ..+ +..+-.. ........+....++|-.+ ...+..+|+.++..|.-.|--.|++++|.+.|+.
T Consensus 380 i--~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 380 I--RNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred H--HhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 3 111 000 0000000 0111112233344444444 3445456777778888888888888888888887
Q ss_pred CCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHhH
Q 006076 351 MDK--R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI-SFVSVLGACSHAGLVEEGKMLFESMR 418 (662)
Q Consensus 351 m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 418 (662)
... | |...||-|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|...|-...
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 652 3 566888888888888888888888888877 677652 33445557788888888877765543
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.07 E-value=6.4e-05 Score=65.21 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (662)
+......+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455666777777888888888888776 3333 5677777777888888888888888888888888888888888888
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 006076 504 AAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~ 522 (662)
...|++++|.+.++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888777653
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.00018 Score=73.19 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=104.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHH
Q 006076 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSC 469 (662)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 469 (662)
....+|+..+...++++.|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| |...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34456677778889999999999999754 355 4456888888889999999998877 2233 666666666778
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
...++.+.|+.+++++.++.|++..+|..|+.+|.+.|++++|.-.+..++.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8999999999999999999999999999999999999999999999998874
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.04 E-value=0.0007 Score=74.49 Aligned_cols=144 Identities=11% Similarity=0.061 Sum_probs=118.5
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH-HH
Q 006076 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RD-VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS-FV 395 (662)
Q Consensus 320 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~ 395 (662)
.+..+...+-.|.......|++++|+.+++...+ || ...+..+...+.+.+++++|+..+++... ..|+..+ ..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 3556688889999999999999999999998874 54 55788899999999999999999999998 5677654 55
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHH
Q 006076 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSLLG 467 (662)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~ 467 (662)
.+..++.+.|++++|..+|+++... .+-+...+..+...+-..|+.++|...|++. ...|...-|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 5566888999999999999999863 2345889999999999999999999999987 23455566655543
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=7.3e-06 Score=51.87 Aligned_cols=35 Identities=43% Similarity=0.628 Sum_probs=32.8
Q ss_pred chHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCCh
Q 006076 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR 183 (662)
Q Consensus 147 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~ 183 (662)
++||++|.+|++.|++++|.++|++|.+. |++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~--g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLER--GIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCC
Confidence 47999999999999999999999999999 999983
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.00 E-value=0.0012 Score=66.65 Aligned_cols=179 Identities=13% Similarity=0.057 Sum_probs=129.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHH-HHH
Q 006076 323 SILPVVSALVTMYARCGKLELGQCVFDHMDK-RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV-LGA 400 (662)
Q Consensus 323 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a 400 (662)
|+...+...+........-..+..++....+ .....+--....+.+.|..++|+..++.+... .||...|..+ ...
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i 349 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDI 349 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4444444444433333322333333332222 33344444555566789999999999998884 6766665554 457
Q ss_pred HhcCCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHH
Q 006076 401 CSHAGLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVEL 477 (662)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~ 477 (662)
+...++.++|.+.++.+... .|+ ....-.+.++|.+.|++++|..++++. ..+-|+..|..|..+|...|+..+
T Consensus 350 ~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 350 LLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 88999999999999999853 565 667788899999999999999999987 334588999999999999999887
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
+... ....|.-.|+|++|.......+++.
T Consensus 427 a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 427 ALLA-----------------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHH-----------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 7654 3566888999999999998888754
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.98 E-value=0.028 Score=57.53 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 435 (662)
.+|-..+..-.+..-...|..+|.+..+.+..+ +....++++.-++ .++.+-|.++|+.-.+.+ ..++.--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf--~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF--GDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 356667777777777889999999999988888 5566677776555 578899999999887765 445666678899
Q ss_pred HHhhcCCHHHHHHHHHhcC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----cchHHHHHHHHHhc
Q 006076 436 LLGRANKLEEAAKIIEDLR---IEP--GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN----AGNYVLLADVYAAA 506 (662)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 506 (662)
-+...|+=..|..+|++.- +.| ...+|..+|.--..-|+...+..+-++....-|.+ ...-..+++.|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 9999999999999999872 233 35789999999999999999999998887655521 12344567777766
Q ss_pred CChHHHHHHHHHH
Q 006076 507 DMWDEVKRVKRLL 519 (662)
Q Consensus 507 g~~~~A~~~~~~m 519 (662)
+.+..-..-++.|
T Consensus 524 d~~~c~~~elk~l 536 (656)
T KOG1914|consen 524 DLYPCSLDELKFL 536 (656)
T ss_pred ccccccHHHHHhh
Confidence 6655444444433
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.4e-05 Score=50.26 Aligned_cols=33 Identities=33% Similarity=0.564 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 389 (662)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 135
>PLN02789 farnesyltranstransferase
Probab=97.94 E-value=0.0011 Score=66.20 Aligned_cols=185 Identities=8% Similarity=-0.005 Sum_probs=131.8
Q ss_pred HHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCH--
Q 006076 334 MYARCGKLELGQCVFDHMDK--R-DVVSWNSLISSYGVHG-YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV-- 407 (662)
Q Consensus 334 ~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-- 407 (662)
.+.+.++.++|..+.+++.+ | +..+|+.--..+...| +.++++..++++..... -+..+|..-...+.+.|..
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhh
Confidence 34455777788888777663 3 4456776666677777 57999999999988532 2334565554455556653
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhc---CC----HHHH
Q 006076 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIH---CN----VELA 478 (662)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~---g~----~~~a 478 (662)
+++..+++.+.+.. +-+...|+...-++.+.|++++|++.++++ ... .|...|+.....+... |. .+.+
T Consensus 125 ~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 67788888887543 447788988889999999999999999988 333 3677788776665544 22 2467
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhc----CChHHHHHHHHHHHh
Q 006076 479 ERASKRLFELEPTNAGNYVLLADVYAAA----DMWDEVKRVKRLLEA 521 (662)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~ 521 (662)
.....+++..+|+|.++|..+..+|... ++..+|.++......
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 7788899999999999999999999873 344567666665443
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.92 E-value=0.036 Score=56.81 Aligned_cols=123 Identities=12% Similarity=0.153 Sum_probs=75.7
Q ss_pred CChHHHHHHHHhCCCchHHHHHHh--cCCCC-CHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhh
Q 006076 50 RNKNELIQSLCKQGNLRQALDVLS--IEPNP-TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS 126 (662)
Q Consensus 50 ~~~~~li~~~~~~g~~~~A~~~~~--~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 126 (662)
.+|+.||.-+..+ ..+++.+.++ -+.-| ....|..-+..-....+++....+|.+-+..-+ +...|..-|+---
T Consensus 21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~YVR 97 (656)
T KOG1914|consen 21 DSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLSYVR 97 (656)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHHHHH
Confidence 3477799887666 9999999999 33334 455677778888888999999999998877643 4666666665333
Q ss_pred c-CCChHHHH----HHHh------cCCCCCcchHHHHHHH---------HHhcCCccHHHHHHHHHhhC
Q 006076 127 H-FDSVDDAR----HVFD------KTRRRTIYVWNALFRA---------LTLAGRGEEVLELYRRMNGT 175 (662)
Q Consensus 127 ~-~g~~~~A~----~~f~------~~~~~~~~~~~~li~~---------~~~~g~~~~A~~l~~~m~~~ 175 (662)
+ .|+...++ +.|+ .|.-..-..|+..|.- |..+.+.+...++|+++...
T Consensus 98 ~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 98 ETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 2 23333221 2222 1222334456665542 33344555666667666543
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.92 E-value=0.0014 Score=72.97 Aligned_cols=215 Identities=11% Similarity=0.125 Sum_probs=137.0
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHhCCCCchhHHH
Q 006076 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ-ACAALAALEQGKMIHGYILRRGLDSILPVVS 329 (662)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 329 (662)
.+...|..|+..|...+++++|.++.+.- . ...|+...+-.++. .+.+.++.+.+..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~--l--~~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEH--L--KEHKKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHH--H--HhCCcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 36778999999999999999999999855 2 23455544333222 34455555554443
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCH
Q 006076 330 ALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407 (662)
Q Consensus 330 ~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 407 (662)
.+++...+..++.....+...|.+ .+-.++..+..+|-+.|+.++|..+|+++.+.. +-|....+.+...++.. ++
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 222222333333223333333322 223366677788888888888888888888854 33456677777777777 88
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc----------------------CCCCCHHHHHHH
Q 006076 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL----------------------RIEPGPKVWGSL 465 (662)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------------------~~~p~~~~~~~l 465 (662)
++|.+++....+. |...+++.++.+++.++ +...-..++--+
T Consensus 166 ~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 166 EKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 8888877777643 22223333333333333 222334455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006076 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504 (662)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (662)
-.-|....+++++..+++.+++.+|.|..+..-++..|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 677888899999999999999999999888888888776
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.92 E-value=0.00038 Score=70.75 Aligned_cols=127 Identities=11% Similarity=0.063 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCC
Q 006076 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406 (662)
Q Consensus 327 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (662)
...+|+..+...++++.|..+|+++.+.++..+..|+..+...++-.+|++++++.... .+-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 33445566666788999999999988766666667888888888888999999888864 22244444444556778899
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC
Q 006076 407 VEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457 (662)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 457 (662)
++.|.++.+++.+. .| +..+|..|...|.+.|++++|+..++.+|+-|
T Consensus 250 ~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999988753 45 56689999999999999999999999887443
No 139
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.88 E-value=0.036 Score=55.59 Aligned_cols=412 Identities=13% Similarity=0.124 Sum_probs=206.2
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCC------hhHHHHHHHHhhcCCChHHHHHHHhcCCCC-CcchHHHHHHHH--HhcCC
Q 006076 91 THHNSLSDALNVHSHLTDNGFDQD------PFLVTKLINVYSHFDSVDDARHVFDKTRRR-TIYVWNALFRAL--TLAGR 161 (662)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~ 161 (662)
-+.+++.++..+|..+.+.. ..+ ....+.++++|.-. +++.....+....+. ....|-.+..++ -+.++
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 35678888888888877653 222 23456777888743 444444444333322 133455555543 45788
Q ss_pred ccHHHHHHHHHhhCCCCCCC------------ChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCC----CCchhHH
Q 006076 162 GEEVLELYRRMNGTGTGIRS------------DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY----NGIVHIM 225 (662)
Q Consensus 162 ~~~A~~l~~~m~~~~~g~~p------------~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~ 225 (662)
+.+|++.+......-.+-.| |-.-=+.....+...|. +.+|+.++..++..=+ .-+..+|
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~----f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR----FSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC----cchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 88888888776554101111 11111233445556677 9999988887766533 4788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhH-------------------------------HHH
Q 006076 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE-------------------------------ALE 274 (662)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~-------------------------------A~~ 274 (662)
+.++-+++++=-++-- +.+...=..-|.-||..|.+.=+.-+ -++
T Consensus 171 d~~vlmlsrSYfLEl~----e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELK----ESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHHHhHHHHHHHH----HhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 8888888764322211 11111111224444444433211111 111
Q ss_pred HHHHHhhhhCCCcCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcCChHHHHHHHh
Q 006076 275 LFREMIMESHDLCPNSVT-MVSVLQACAALAALEQGKMIHGYILRRGLDS----ILPVVSALVTMYARCGKLELGQCVFD 349 (662)
Q Consensus 275 ~~~~m~~~~~~~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~----~~~~~~~li~~y~~~g~~~~A~~~~~ 349 (662)
++..- ...-+.|+... ...+...+.. +.+++..+-+.+....+.+ =+.++..++....+.++...|.+.+.
T Consensus 247 ~l~~W--e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 247 ILENW--ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHH--HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11111 11223333221 1122222222 3444444433333321111 12234444444555566666655555
Q ss_pred hCC--CCChh-------HHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHhHH-HHHH---HHHhcCCC-HHHHH
Q 006076 350 HMD--KRDVV-------SWNSLISSYGVH----GYGGKAIQIFKEMIYHGVSPSPISF-VSVL---GACSHAGL-VEEGK 411 (662)
Q Consensus 350 ~m~--~~~~~-------~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll---~a~~~~g~-~~~a~ 411 (662)
-+. +|+.. +-.++-+..+.. -+..+-+.++.+..... .|..-. ..++ .-+-+.|. -++|.
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHH
Confidence 433 33322 111222222211 11223333444443322 222111 1111 12333444 67788
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHH----HHhhc---C---CHHHHHHHHHhcCCCC----CHHHHHHHHHH--HHhcCCH
Q 006076 412 MLFESMRKEHMIRPSVEHYACMVD----LLGRA---N---KLEEAAKIIEDLRIEP----GPKVWGSLLGS--CRIHCNV 475 (662)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~li~----~~~~~---g---~~~~A~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~ 475 (662)
++++.+.+-. +-|..+-|.+.. .|..+ . ++-+-..++++.++.| +...-|.|-.| ...+|++
T Consensus 401 nLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 401 NLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 8888776421 234444333322 12111 1 1222334455556555 33344555554 4678999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.++.-....+.+..| ++.+|..++-.+....+++||..++..++.
T Consensus 479 ~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 479 HKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 999999899999999 699999999999999999999999987663
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0063 Score=56.20 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076 327 VVSALVTMYARCGKLELGQCVFDHMDK--R---DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401 (662)
Q Consensus 327 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (662)
+|..++-+...+|+.+.|...++++.. | -+.-..+| -+-..|++++|+++|+.+.+.. +.|.+++..=+...
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 334445555567777777777776653 2 12222222 2345788999999999998875 44567777666666
Q ss_pred hcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHh---cCCHH
Q 006076 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRI---HCNVE 476 (662)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~g~~~ 476 (662)
-..|..-+|++-+....+. +..|.+.|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+.. ..+.+
T Consensus 131 ka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 6678877888888888765 5789999999999999999999999999998 3455 44555555554433 34678
Q ss_pred HHHHHHHHHHhcCCCCc
Q 006076 477 LAERASKRLFELEPTNA 493 (662)
Q Consensus 477 ~a~~~~~~~~~~~p~~~ 493 (662)
.+...+.+.+++.|.+.
T Consensus 209 ~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHHhChHhH
Confidence 89999999999998543
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.84 E-value=0.00066 Score=58.76 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=87.9
Q ss_pred HHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC
Q 006076 378 IFKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI 455 (662)
Q Consensus 378 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 455 (662)
.|++... ..|+. .....+...+...|++++|.+.|+.+.... +.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 45544 445566677888899999999998887532 447788888999999999999999988877 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 006076 456 EP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494 (662)
Q Consensus 456 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (662)
.| +...|..+...+...|+.+.|...+++.++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5677888888899999999999999999999998754
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0037 Score=57.68 Aligned_cols=160 Identities=14% Similarity=0.112 Sum_probs=125.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHH-HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006076 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV-LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437 (662)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 437 (662)
|..++-+....|+.+-|...++++... + |.+.-...+ ..-+...|++++|.++++.+..+. +.|..++-.-+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHH
Confidence 444555666788999999999999886 3 554322222 122445799999999999998764 55777888888888
Q ss_pred hhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---ChHHH
Q 006076 438 GRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD---MWDEV 512 (662)
Q Consensus 438 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 512 (662)
-..|+--+|++-+.+. .+..|...|.-+-..|...|+++.|.-.+++++-..|.++..+..+++.+.-.| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888877766 456799999999999999999999999999999999999999999999987666 56667
Q ss_pred HHHHHHHHhC
Q 006076 513 KRVKRLLEAR 522 (662)
Q Consensus 513 ~~~~~~m~~~ 522 (662)
.+.+.+..+-
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 7777766653
No 143
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.81 E-value=0.037 Score=53.39 Aligned_cols=367 Identities=16% Similarity=0.110 Sum_probs=193.5
Q ss_pred HHHHHHhCCCchHHHHHHhcCCCCCHhhHHHH---HHHHhcCCChHHHHHHHHHHHHhCCCCChhHH-HHHHHHhhcCCC
Q 006076 55 LIQSLCKQGNLRQALDVLSIEPNPTQHTYELL---LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV-TKLINVYSHFDS 130 (662)
Q Consensus 55 li~~~~~~g~~~~A~~~~~~~~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~ 130 (662)
+-..+...|++.+|+.-|...+..|+..|.++ ...|...|+-..|..-+...++. .||-... -.-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 55666777888888888874444444444444 34566667777777777766663 4543211 112234557777
Q ss_pred hHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHH
Q 006076 131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH 210 (662)
Q Consensus 131 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~ 210 (662)
++.|..-|+.+.+.++. -+....++.+.- +.+++. .....+..+...|+ ...+....
T Consensus 122 le~A~~DF~~vl~~~~s-~~~~~eaqskl~-------~~~e~~-----------~l~~ql~s~~~~GD----~~~ai~~i 178 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPS-NGLVLEAQSKLA-------LIQEHW-----------VLVQQLKSASGSGD----CQNAIEMI 178 (504)
T ss_pred HHHHHHHHHHHHhcCCC-cchhHHHHHHHH-------hHHHHH-----------HHHHHHHHHhcCCc----hhhHHHHH
Confidence 77777777666543321 011111111111 111111 11222333344455 66666666
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCc
Q 006076 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM---AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287 (662)
Q Consensus 211 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 287 (662)
..+++.. +-|...+..-..+|...|.+..|+.-+... ...++...--+-..+-..|+.+.++...++- ..+.
T Consensus 179 ~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iREC----LKld 253 (504)
T KOG0624|consen 179 THLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIREC----LKLD 253 (504)
T ss_pred HHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHH----HccC
Confidence 6666654 556667777777777777777776554433 3445666666666677777777777766654 2344
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC--hh---HHH
Q 006076 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RD--VV---SWN 360 (662)
Q Consensus 288 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~--~~---~~~ 360 (662)
||....-.. | ..+....+.++.|. .....+++.++..-.+...+ |. .+ .+.
T Consensus 254 pdHK~Cf~~---Y---KklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r 311 (504)
T KOG0624|consen 254 PDHKLCFPF---Y---KKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFR 311 (504)
T ss_pred cchhhHHHH---H---HHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeh
Confidence 554322111 1 11111111111111 11233445454444444332 22 12 334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 006076 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439 (662)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 439 (662)
.+-.+|...|++.+|++.-.+.++ +.|| ..++.--..||.-...++.|+.-|+...+ +.++-.- ++
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e---~n~sn~~--------~r 378 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE---LNESNTR--------AR 378 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCcccHH--------HH
Confidence 455667777888888888888877 5666 56776777777777788888888887753 2232111 01
Q ss_pred cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCC
Q 006076 440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE-LEPTN 492 (662)
Q Consensus 440 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~ 492 (662)
. -++.|.++-+..+ +.| |.-++. -.++..-.+...+|+++-. -.|+|
T Consensus 379 e-Gle~Akrlkkqs~-kRD---YYKILG-VkRnAsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 379 E-GLERAKRLKKQSG-KRD---YYKILG-VKRNASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred H-HHHHHHHHHHHhc-cch---HHHHhh-hcccccHHHHHHHHHHHHHhcCCcc
Confidence 1 2344555554443 222 222222 2344445566666776654 56776
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.79 E-value=3.1e-05 Score=48.56 Aligned_cols=34 Identities=32% Similarity=0.620 Sum_probs=31.6
Q ss_pred cchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCC
Q 006076 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS 181 (662)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p 181 (662)
+.+||.+|.+|++.|+++.|+++|++|.+. |++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~--gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQ--GVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 368999999999999999999999999998 8887
No 145
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0096 Score=55.44 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=114.8
Q ss_pred HHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 006076 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354 (662)
Q Consensus 275 ~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 354 (662)
+.+.+ .......|......-...|.+.+++++|.+..... . +......=+..+.|..+++-|++.++.|.+-
T Consensus 95 l~E~~--a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 95 LYELV--ADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHH--HhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444 34444444444444455688889999998877651 1 2233333355667888899999999999874
Q ss_pred -ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHH
Q 006076 355 -DVVSWNSLISSYGV----HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH 429 (662)
Q Consensus 355 -~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 429 (662)
+-.+.+-|..++.. .+...+|.-+|++|-+. ..|+..+.+....++...|++++|..+++....+. ..++.+
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpet 243 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPET 243 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHH
Confidence 34455656665543 44688899999999765 68999999999999999999999999999988654 446667
Q ss_pred HHHHHHHHhhcCCHHHHH-HHHHhc
Q 006076 430 YACMVDLLGRANKLEEAA-KIIEDL 453 (662)
Q Consensus 430 ~~~li~~~~~~g~~~~A~-~~~~~m 453 (662)
...+|-.-...|...++. +.+.+.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHH
Confidence 766666666666554433 334444
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=3.3e-05 Score=47.22 Aligned_cols=31 Identities=42% Similarity=0.636 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 387 (662)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 147
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.73 E-value=0.015 Score=64.95 Aligned_cols=240 Identities=10% Similarity=0.034 Sum_probs=144.2
Q ss_pred CCCC-hhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHH
Q 006076 179 IRSD-RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS 257 (662)
Q Consensus 179 ~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 257 (662)
..|+ ...+..|+..+...++ ++++.++....++.. +.....|-.+...|.+.++.+++..+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~----~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv------------- 87 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENL----TDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL------------- 87 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------
Confidence 3443 3355667777767777 888888877655543 22233333333366666665554433
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006076 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337 (662)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 337 (662)
.++.......++.-+..+...| ... .-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i--~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKI--LLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred hhhhhcccccchhHHHHHHHHH--Hhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 3334444444453333333444 221 2344567777788888899999999999988887 5578888888888888
Q ss_pred cCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHh
Q 006076 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417 (662)
Q Consensus 338 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 417 (662)
. ++++|.+++.+.. .-|...+++.++.+++.++... .|+...+ -.++.+.+
T Consensus 163 ~-dL~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki 213 (906)
T PRK14720 163 E-DKEKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKV 213 (906)
T ss_pred h-hHHHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHH
Confidence 8 8888888876542 3366677888888888888773 4444322 12222223
Q ss_pred HHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHH
Q 006076 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCR 470 (662)
Q Consensus 418 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 470 (662)
....|..--+.++--+..-|-..++++++..+++.+ ...| |.....-++..|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222222333445555666677777777777777766 3333 4444445555544
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00041 Score=55.18 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=71.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 006076 430 YACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507 (662)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (662)
+..+...+...|++++|...+++. ...| +...|..+...+...++++.|...+++.....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455666777788888888888776 3333 34667777778888888888888888888888887778888888888888
Q ss_pred ChHHHHHHHHHHHh
Q 006076 508 MWDEVKRVKRLLEA 521 (662)
Q Consensus 508 ~~~~A~~~~~~m~~ 521 (662)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.71 E-value=0.0015 Score=57.37 Aligned_cols=114 Identities=18% Similarity=0.115 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCCCH----HHHHHHHHHHHhcCCHHH
Q 006076 404 AGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDLR-IEPGP----KVWGSLLGSCRIHCNVEL 477 (662)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~g~~~~ 477 (662)
.++...+...++.+.++++-.| .....-.+...+...|++++|...|+... ..||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5566666666666655431110 12233334455666666766666666651 12332 233345555666677777
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (662)
|+..++... -.+-.+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 776665522 1222345566677777777777777777664
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=9.1e-05 Score=58.02 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 006076 441 NKLEEAAKIIEDL-RIEP---GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516 (662)
Q Consensus 441 g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (662)
|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5556666666555 1122 344455566666667777777777666 5555555555566677777777777777776
Q ss_pred HH
Q 006076 517 RL 518 (662)
Q Consensus 517 ~~ 518 (662)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.59 E-value=0.001 Score=55.89 Aligned_cols=58 Identities=10% Similarity=-0.038 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 464 SLLGSCRIHCNVELAERASKRLFELEPTN---AGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.+..++...|+++.|...++.+....|++ +..+..++.+|.+.|++++|.+.++.+.+
T Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 34444444444555555555444444432 22344444445555555555555544443
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.57 E-value=0.00023 Score=53.27 Aligned_cols=64 Identities=20% Similarity=0.164 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 006076 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD-MWDEVKRVKRLLEA 521 (662)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 521 (662)
++.+|..+...+...|++++|+..|+++++++|+++..|..++.+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999999988765
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.57 E-value=0.0018 Score=54.46 Aligned_cols=104 Identities=14% Similarity=0.072 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHH
Q 006076 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLL 466 (662)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 466 (662)
++..+...+...|++++|.+.|..+.....-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555666667777776666654321101 1334555677777777777777777765 22232 45566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 006076 467 GSCRIHCNVELAERASKRLFELEPTNAGNY 496 (662)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (662)
.++...|+.++|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 777788888888888888888888765443
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.57 E-value=7.8e-05 Score=45.52 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCCccHHHHHHHHHhhC
Q 006076 147 YVWNALFRALTLAGRGEEVLELYRRMNGT 175 (662)
Q Consensus 147 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 175 (662)
++||++|++|++.|++++|.++|++|.+.
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 47888999999999999999999988876
No 155
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.52 E-value=0.13 Score=51.75 Aligned_cols=417 Identities=12% Similarity=0.035 Sum_probs=221.2
Q ss_pred cchhhhccCC--CchhhHHhhhhccCCCCccccCCCChHHHHHHH--HhCCCchHHHHHHh------cCCCC--------
Q 006076 17 YHTNSIAHLP--PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSL--CKQGNLRQALDVLS------IEPNP-------- 78 (662)
Q Consensus 17 ~~~~li~~y~--~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~------~~~~p-------- 78 (662)
+++.++++|. .++...... ....+..+.+ .|-.+..++ -+.+.+.+|++.|. .+..|
T Consensus 48 l~grilnAffl~nld~Me~~l-~~l~~~~~~s----~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~ 122 (549)
T PF07079_consen 48 LGGRILNAFFLNNLDLMEKQL-MELRQQFGKS----AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQ 122 (549)
T ss_pred HhhHHHHHHHHhhHHHHHHHH-HHHHHhcCCc----hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 7888999988 777766666 5555554432 365666655 46888999988887 12221
Q ss_pred ----CHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC----CCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHH
Q 006076 79 ----TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF----DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN 150 (662)
Q Consensus 79 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 150 (662)
|-.-=+..+.++...|++.+|+.++++++..=+ ..+..+|+.++-++++.=-+ ++-+.+...=..-|-
T Consensus 123 ~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfL----El~e~~s~dl~pdyY 198 (549)
T PF07079_consen 123 QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFL----ELKESMSSDLYPDYY 198 (549)
T ss_pred HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHH----HHHHhcccccChHHH
Confidence 122223455677788999999999888876543 37888888888777754111 111222221123455
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCc-hhHHHHHH
Q 006076 151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI-VHIMTTLI 229 (662)
Q Consensus 151 ~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li 229 (662)
-+|-.|.+.=+.-++ -.=. .+.|...-+..++....-... .++.--.+++..-.+.-+.|+ ..+...|+
T Consensus 199 emilfY~kki~~~d~------~~Y~--k~~peeeL~s~imqhlfi~p~--e~l~~~mq~l~~We~~yv~p~~~LVi~~L~ 268 (549)
T PF07079_consen 199 EMILFYLKKIHAFDQ------RPYE--KFIPEEELFSTIMQHLFIVPK--ERLPPLMQILENWENFYVHPNYDLVIEPLK 268 (549)
T ss_pred HHHHHHHHHHHHHhh------chHH--hhCcHHHHHHHHHHHHHhCCH--hhccHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 566565543111111 0000 233444444444444333221 113334445544444445554 33444555
Q ss_pred HHHHhcCCHHHHHHHHHcCC--------CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHH------
Q 006076 230 DMYARFGCVMYAGFVFSQMA--------VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS------ 295 (662)
Q Consensus 230 ~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~------ 295 (662)
.-+.+ +.+++..+-+.+. ++=+.++..++...++.++..+|-+.+.-+ . -+.|+...-.-
T Consensus 269 ~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL--~--~ldp~~svs~Kllls~~ 342 (549)
T PF07079_consen 269 QQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL--K--ILDPRISVSEKLLLSPK 342 (549)
T ss_pred HHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--H--hcCCcchhhhhhhcCHH
Confidence 55554 4444444433332 234567888999999999999998887755 2 23344321111
Q ss_pred -HHHHHH-cc---CCHHHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhcCC-hHHHHHHHhhCCC---CChhHHHHHH
Q 006076 296 -VLQACA-AL---AALEQGKMIHGYILRRGLDSILPVVSAL---VTMYARCGK-LELGQCVFDHMDK---RDVVSWNSLI 363 (662)
Q Consensus 296 -ll~a~~-~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~y~~~g~-~~~A~~~~~~m~~---~~~~~~~~li 363 (662)
+-+..+ .- .++..-..+++.+...++... ....-| ..-+-+.|. -++|..+++.+.+ -|..+-|...
T Consensus 343 ~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~ 421 (549)
T PF07079_consen 343 VLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF 421 (549)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH
Confidence 111111 11 112222333333333322211 111112 222444555 6667777776653 3444333322
Q ss_pred ----HHHHhc---CChHHHHHHHHHHHHcCCCCCHhHH----HHHHH--HHhcCCCHHHHHHHHHHhHHhcCCCCChHHH
Q 006076 364 ----SSYGVH---GYGGKAIQIFKEMIYHGVSPSPISF----VSVLG--ACSHAGLVEEGKMLFESMRKEHMIRPSVEHY 430 (662)
Q Consensus 364 ----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 430 (662)
..|.+. ..+.+-+.+-+-..+.|++|-.+.= +.|.. -+...|++.++.-+-..+.+ +.|++.+|
T Consensus 422 ~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~ 498 (549)
T PF07079_consen 422 LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAY 498 (549)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHH
Confidence 223221 1223333333444556777644322 22222 23456888888776666653 67888888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 006076 431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS 464 (662)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 464 (662)
..+.-.+....+++||.+++.++| |+..+|++
T Consensus 499 RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 499 RLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 888888888888888888888876 56666665
No 156
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.15 Score=53.84 Aligned_cols=253 Identities=13% Similarity=0.140 Sum_probs=126.5
Q ss_pred hCCCchHHHHHHhcCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CCC--------CChhHHHHHHHHhhcCCCh
Q 006076 61 KQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDN-GFD--------QDPFLVTKLINVYSHFDSV 131 (662)
Q Consensus 61 ~~g~~~~A~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~y~~~g~~ 131 (662)
..=.+++|.++.+. .|.+..|..+.......-.++.|...|-+.... |+. .+...-.+=|.+| .|++
T Consensus 675 e~vgledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~f 750 (1189)
T KOG2041|consen 675 EAVGLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEF 750 (1189)
T ss_pred HHhchHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcch
Confidence 33445666666654 345566666666555555566666555433211 110 1111122223333 4899
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCC----hhhHHHHHHHHHhCCCCccchHHHH
Q 006076 132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSD----RFTYTYVLKACVASSCGFSLLKHGK 207 (662)
Q Consensus 132 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~----~~t~~~ll~~~~~~~~~~~~~~~a~ 207 (662)
++|.+++-.+.++|. .|..+.+.|++-...++++.- |-..| ...+..+-..++.... ++.|.
T Consensus 751 eeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g-----~~d~dD~~~e~A~r~ig~~fa~~~~----We~A~ 816 (1189)
T KOG2041|consen 751 EEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG-----GSDDDDEGKEDAFRNIGETFAEMME----WEEAA 816 (1189)
T ss_pred hHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc-----CCCcchHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 999999999988875 355566667776666666532 11111 1234444444444444 55555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCc
Q 006076 208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC 287 (662)
Q Consensus 208 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 287 (662)
+.+..--. ...+++.|.+..++++-+.+-..+++. ....-.|...+...|.-++|.+.|-+- + .
T Consensus 817 ~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~-----s-~ 880 (1189)
T KOG2041|consen 817 KYYSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR-----S-L 880 (1189)
T ss_pred HHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc-----c-C
Confidence 55433211 113455555555555555555555543 233445556666666666666665433 1 1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-----------CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006076 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRG-----------LDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353 (662)
Q Consensus 288 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-----------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 353 (662)
|. ..+.+|..++++.+|.++-+...-.. +-.+..+ ---|.++-+.|+.-+|.+++.+|.+
T Consensus 881 pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 881 PK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred cH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhH
Confidence 11 23445555555555544432210000 0000000 1135566677777777777777753
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.49 E-value=0.0047 Score=54.15 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=44.7
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhHHHHHHHHHHhcCChH
Q 006076 298 QACAALAALEQGKMIHGYILRRGLDSI--LPVVSALVTMYARCGKLELGQCVFDHMDKR--DVVSWNSLISSYGVHGYGG 373 (662)
Q Consensus 298 ~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~ 373 (662)
..+...|++++|...++.+......+. ....-.|...+...|++++|...++....+ ....+......|...|+.+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHH
Confidence 444555666666666666555442222 112333455566666666666666554432 2234445555666666666
Q ss_pred HHHHHHHH
Q 006076 374 KAIQIFKE 381 (662)
Q Consensus 374 ~A~~~~~~ 381 (662)
+|...|+.
T Consensus 136 ~A~~~y~~ 143 (145)
T PF09976_consen 136 EARAAYQK 143 (145)
T ss_pred HHHHHHHH
Confidence 66666654
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.47 E-value=0.0063 Score=59.88 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA-CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 435 (662)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.+ +.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 468888888888888999999999998542 2234444444443 333577777999999998764 678889999999
Q ss_pred HHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 436 LLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+.-|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999987 22333 3589999999999999999999999999988874
No 159
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.45 E-value=0.15 Score=50.86 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHH
Q 006076 329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408 (662)
Q Consensus 329 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 408 (662)
+..|.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++... +-.++-|..++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566789999999999988889999999999999999999887765432 223478888999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 006076 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 469 (662)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 469 (662)
+|..+...+. +..-+.+|.++|++.+|.+.--+.+ |...+..+..-|
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 9988877631 1456788999999999987765543 555444444443
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.45 E-value=0.006 Score=65.15 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=24.9
Q ss_pred CCChhHHHHHHHHHHhc--C---ChHHHHHHHHHHHHcCCCCCH
Q 006076 353 KRDVVSWNSLISSYGVH--G---YGGKAIQIFKEMIYHGVSPSP 391 (662)
Q Consensus 353 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~ 391 (662)
..|...|...+.|.... + ...+|..+|++..+ ..|+.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~ 375 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDF 375 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCc
Confidence 45677787777775432 2 26678888888887 56764
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.44 E-value=0.00096 Score=68.11 Aligned_cols=105 Identities=13% Similarity=0.043 Sum_probs=87.6
Q ss_pred HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCH
Q 006076 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNV 475 (662)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 475 (662)
...+...|++++|.+.|+.+.+.. +.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 456677899999999999998642 446788889999999999999999999887 4455 567888889999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006076 476 ELAERASKRLFELEPTNAGNYVLLADVYA 504 (662)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (662)
++|+..++++++++|+++.....+..+..
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999998877766655543
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.43 E-value=0.002 Score=58.42 Aligned_cols=82 Identities=13% Similarity=0.030 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 006076 427 VEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501 (662)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (662)
...+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666667777777777777777765 22222 3567778888888889999999999888888888888888888
Q ss_pred HHHhcCC
Q 006076 502 VYAAADM 508 (662)
Q Consensus 502 ~~~~~g~ 508 (662)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8887776
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.42 E-value=0.00046 Score=50.87 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=47.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
+...+...|++++|...++++++..|+++..+..++.++...|++++|...+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456777888888888888888888888888888888888888888888888887653
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.40 E-value=0.0019 Score=58.30 Aligned_cols=94 Identities=10% Similarity=-0.129 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (662)
....|..+...+...|++++|...|++. .+.|+ ..+|..+...+...|+.++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677778888889999999998877 23332 357888999999999999999999999999999888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHH
Q 006076 501 DVYA-------AADMWDEVKRVKRLL 519 (662)
Q Consensus 501 ~~~~-------~~g~~~~A~~~~~~m 519 (662)
.+|. +.|++++|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888776666543
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.40 E-value=0.0031 Score=64.45 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=82.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 006076 362 LISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440 (662)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 440 (662)
....+...|++++|+++|++.++. .| +...|..+..++.+.|++++|...++.+.+.. +.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHh
Confidence 345667889999999999999984 44 45677788889999999999999999998642 34677899999999999
Q ss_pred CCHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 006076 441 NKLEEAAKIIEDL-RIEPGPKVWGSLLGS 468 (662)
Q Consensus 441 g~~~~A~~~~~~m-~~~p~~~~~~~ll~~ 468 (662)
|++++|...|++. .+.|+......++.-
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999987 556665554444433
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.37 E-value=0.0024 Score=50.55 Aligned_cols=62 Identities=24% Similarity=0.236 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076 429 HYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490 (662)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (662)
.+..+...+...|++++|.+.++.. ...| +..+|..+...+...|+.+.|...+++..+..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3334444444444444444444433 1112 223444455555555555555555555554444
No 167
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.34 E-value=0.034 Score=48.93 Aligned_cols=131 Identities=12% Similarity=0.074 Sum_probs=106.2
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC------CCCCHH
Q 006076 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR------IEPGPK 460 (662)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~p~~~ 460 (662)
..|+...-..|..+....|+..+|...|++.. ..-+..|......+.++....+++.+|...++++. -.||..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 56777777788889999999999999999886 33356688888889999999999999999988772 234443
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
..+...+...|..+.|+..|+.++.-.|. +..-.....++.++|+.++|..-+..+.+
T Consensus 164 --Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 --LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred --HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 44667888999999999999999998886 56667778899999999999887766654
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=97.34 E-value=0.0061 Score=53.00 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=78.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076 431 ACMVDLLGRANKLEEAAKIIEDLR-IE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508 (662)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (662)
-....-+-..|++++|..+|.-+- .. -+...|..|..+|...++++.|...|..+..++++||..+...+..|...|+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 344455668899999999998762 22 3666788899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh
Q 006076 509 WDEVKRVKRLLEA 521 (662)
Q Consensus 509 ~~~A~~~~~~m~~ 521 (662)
.+.|...|....+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987774
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.30 E-value=0.23 Score=49.57 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=50.8
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHH
Q 006076 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308 (662)
Q Consensus 229 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~ 308 (662)
|.-+...|+...|.++-.+..-||..-|-..+.+++..++|++-.++-. . . -.+.-|-.++.+|...|+..+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~-----s-k--KsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAK-----S-K--KSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHh-----C-C--CCCCChHHHHHHHHHCCCHHH
Confidence 3344445555566666555555555556666666666666554433221 1 1 122445555555555555555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 006076 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347 (662)
Q Consensus 309 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 347 (662)
|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 256 A~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 256 ASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 55544431 113345555555555555443
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.00086 Score=63.46 Aligned_cols=111 Identities=20% Similarity=0.201 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 006076 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIED 452 (662)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (662)
+...+-++++.+| +-..+.+++.+|...|...++ +.| |...|..-..+|.+.|.++.|++-.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3445555555554 346778999999999999985 455 677788889999999999999988776
Q ss_pred c-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076 453 L-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499 (662)
Q Consensus 453 m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (662)
. .+.|. ..+|..|..+|...|++++|.+.|++.++++|++......|
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 6 55664 56899999999999999999999999999999986443333
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.28 E-value=0.01 Score=53.74 Aligned_cols=131 Identities=11% Similarity=0.085 Sum_probs=88.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 006076 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS--PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC 432 (662)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 432 (662)
....|..+...|...|++++|+..|++.......++ ...+..+...+.+.|++++|...++...+.. +.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence 445677777788888888888888888876443332 3567777778888888888888888876532 234566666
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508 (662)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (662)
+...|...|+...+..-++.. ...+++|...++++.+.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 777777777766655333221 112677888999999988875 5555555555443
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.0029 Score=59.96 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=76.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcC
Q 006076 364 SSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRAN 441 (662)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 441 (662)
.-+.+.+++.+|+..|.+.++ +.|+ .+-|..=..||++.|.++.|++-.+.... +.| ....|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 346778899999999999988 5664 45666677799999999999988887764 445 3678999999999999
Q ss_pred CHHHHHHHHHhc-CCCCCHHHHHH
Q 006076 442 KLEEAAKIIEDL-RIEPGPKVWGS 464 (662)
Q Consensus 442 ~~~~A~~~~~~m-~~~p~~~~~~~ 464 (662)
++++|.+.|++. .+.|+-.+|-+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999998887 67887766643
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.14 E-value=0.12 Score=50.93 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhcC---C-----CCCHH-HHHHHHHHHHh
Q 006076 405 GLVEEGKMLFESMRKEHMIRP----SVEHYACMVDLLGRANKLEEAAKIIEDLR---I-----EPGPK-VWGSLLGSCRI 471 (662)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~~~~~ 471 (662)
|++++|.+.|+...+-+.-.. -..++..+...+.+.|++++|.++|++.. . +.+.. .+-..+-.+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 555555555554443221111 12344556666777777777777776651 1 11111 12223334555
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 006076 472 HCNVELAERASKRLFELEPT 491 (662)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~ 491 (662)
.||...|...+++..+.+|.
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTT
T ss_pred cCCHHHHHHHHHHHHhhCCC
Confidence 67777777777777777664
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.0006 Score=50.77 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=43.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
...|++++|...++++++.+|++...+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35688888888888888888888888888888888888888888888876653
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.12 E-value=0.06 Score=53.18 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHh-cCCCCC--hH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-----SP-ISFVSVLGACSHAGLVEEGKMLFESMRKE-HMIRPS--VE 428 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~--~~ 428 (662)
.+..+...+.+.|++++|+++|++....-... +. ..|...+-.+...|++..|.+.++..... .++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 44556667778888888888888776543221 11 12233333555667888888888776532 123222 33
Q ss_pred HHHHHHHHHhh--cCCHHHHHHHHHhcCCCCCHH
Q 006076 429 HYACMVDLLGR--ANKLEEAAKIIEDLRIEPGPK 460 (662)
Q Consensus 429 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~p~~~ 460 (662)
....|++++-. ...+++|..-|+.+. +.|..
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 45556666643 346666777677664 33443
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.11 E-value=0.11 Score=54.48 Aligned_cols=209 Identities=15% Similarity=0.128 Sum_probs=110.6
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH
Q 006076 211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290 (662)
Q Consensus 211 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~ 290 (662)
+.+.+.|-.|+... +.+.++-.|.+.+|.++|.+ +|....|+++|..| +--.
T Consensus 624 ~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDl--RMFD----- 675 (1081)
T KOG1538|consen 624 EERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDL--RMFD----- 675 (1081)
T ss_pred HHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHH--HHHH-----
Confidence 34555665566543 34556667888888888765 45556677777666 2110
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 006076 291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370 (662)
Q Consensus 291 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 370 (662)
..+-+...|..++-+.+.+.-.+-. -++.--.+...++...|+.++|..+. ..+|
T Consensus 676 -----~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~g 730 (1081)
T KOG1538|consen 676 -----YAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHG 730 (1081)
T ss_pred -----HHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh------------------hccc
Confidence 1122333344443333332211100 00000123345556667777765543 3344
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 006076 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450 (662)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 450 (662)
-.+-++++-+++-. .+..+...+..-+-+...+..|-++|..|-. ...++++....+++.+|..+-
T Consensus 731 W~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalA 796 (1081)
T KOG1538|consen 731 WVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALA 796 (1081)
T ss_pred HHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhh
Confidence 44555555444422 2334555555555666777778888877742 135778888888888888888
Q ss_pred HhcC-CCCCHHH-HHH----------HHHHHHhcCCHHHHHHHHHHHH
Q 006076 451 EDLR-IEPGPKV-WGS----------LLGSCRIHCNVELAERASKRLF 486 (662)
Q Consensus 451 ~~m~-~~p~~~~-~~~----------ll~~~~~~g~~~~a~~~~~~~~ 486 (662)
++.| +.||+.. |.. --.+|.+.|+..+|.++++++.
T Consensus 797 e~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 797 EKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 8875 3444432 111 1134445555555555555543
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.031 Score=50.38 Aligned_cols=81 Identities=10% Similarity=-0.007 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 006076 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS--PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433 (662)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 433 (662)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|++++|...++...+.. +.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 44666777777778888888888888776432221 2466777777778888888888887776431 2234445555
Q ss_pred HHHHh
Q 006076 434 VDLLG 438 (662)
Q Consensus 434 i~~~~ 438 (662)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.08 E-value=0.0018 Score=48.97 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=49.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
..+...+++++|..++++++.++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788899999999999999999988899999999999999999999998887643
No 179
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.08 E-value=0.0019 Score=47.59 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=48.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076 433 MVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493 (662)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (662)
+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456678888899999888887 4445 567788888888999999999999999999988764
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.07 E-value=0.0021 Score=50.26 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=44.4
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 006076 369 HGYGGKAIQIFKEMIYHGVS-PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEA 446 (662)
Q Consensus 369 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 446 (662)
+|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. .+. .| +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~---~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL---DPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH---HHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC---CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46677777777777664321 1333444456666777777777777765 211 22 223333446666677777777
Q ss_pred HHHHHh
Q 006076 447 AKIIED 452 (662)
Q Consensus 447 ~~~~~~ 452 (662)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 766654
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.019 Score=54.98 Aligned_cols=101 Identities=14% Similarity=0.083 Sum_probs=86.1
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCcchHHH
Q 006076 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIH---CNVELAERASKRLFELEPTNAGNYVL 498 (662)
Q Consensus 424 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (662)
+-|...|-.|...|.+.|+...|..-|.+. .+. +++..+..+..++... ....++..++++++.++|.|+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 558999999999999999999999999887 333 4666777776665433 35678999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 499 LADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 499 l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
|+-.+...|++.+|...++.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999997543
No 182
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.02 E-value=0.00048 Score=42.87 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChHHHHH
Q 006076 482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514 (662)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 514 (662)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 183
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.01 E-value=0.025 Score=55.65 Aligned_cols=127 Identities=10% Similarity=0.070 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006076 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA-CAALAALEQGKMIHGYILRRGLDSILPVVSALV 332 (662)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 332 (662)
.+|..++...-+.+..+.|..+|.+. ...+ ..+...|...... +...++.+.|..+|+...+. +..+...+...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a--~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRA--RKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH--HcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 35677777777777777777777777 3222 1122333322222 23345666677788777765 455677777777
Q ss_pred HHHHhcCChHHHHHHHhhCCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076 333 TMYARCGKLELGQCVFDHMDK--R----DVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384 (662)
Q Consensus 333 ~~y~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (662)
+.+.+.|+.+.|+.+|++... + -...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888877653 2 224677777777777777777777777766
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.95 E-value=0.008 Score=61.60 Aligned_cols=121 Identities=10% Similarity=0.094 Sum_probs=100.4
Q ss_pred cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC----CCcc
Q 006076 74 IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG--FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR----RTIY 147 (662)
Q Consensus 74 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~ 147 (662)
...+.+......++..+....+++.+..++-...... ...-+.+..++|+.|.+.|..+.+..+++.=.. +|..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 5566688888899999998889999999888887652 333455667999999999999999999976443 6889
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhC
Q 006076 148 VWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196 (662)
Q Consensus 148 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~ 196 (662)
++|.||..+.+.|++..|.++...|... +...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ--e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQ--EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999888 6777778888877777664
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.95 E-value=0.011 Score=47.54 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHhcCC--------CHHHHHHHHHHhHHhcCCCCChH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGV-SPSPISFVSVLGACSHAG--------LVEEGKMLFESMRKEHMIRPSVE 428 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 428 (662)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+..+.. .+.+.+.+++.|.. .+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence 334455666666889999999999999998 889999999998876542 24456777777773 46888888
Q ss_pred HHHHHHHHHhh
Q 006076 429 HYACMVDLLGR 439 (662)
Q Consensus 429 ~~~~li~~~~~ 439 (662)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 186
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.92 E-value=0.51 Score=46.79 Aligned_cols=239 Identities=16% Similarity=0.137 Sum_probs=150.4
Q ss_pred HcCChhHHHHHHHHHhhhhCCCcCCHHH----HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006076 265 RNGMAFEALELFREMIMESHDLCPNSVT----MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340 (662)
Q Consensus 265 ~~g~~~~A~~~~~~m~~~~~~~~p~~~t----~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 340 (662)
-.|+++.|.+-|+.|. . |+.| +..+.-...+.|+.+.|+++-+..-..- +.-.....+++...+..|+
T Consensus 132 ~eG~~~~Ar~kfeAMl--~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 132 LEGDYEDARKKFEAML--D-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGD 203 (531)
T ss_pred hcCchHHHHHHHHHHh--c-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCC
Confidence 3567777777777772 1 2222 2223333346677777777666665442 1124466677788888888
Q ss_pred hHHHHHHHhhCC-----CCChh--HHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhcCCCHHH
Q 006076 341 LELGQCVFDHMD-----KRDVV--SWNSLISSYGV---HGYGGKAIQIFKEMIYHGVSPSPIS-FVSVLGACSHAGLVEE 409 (662)
Q Consensus 341 ~~~A~~~~~~m~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~ 409 (662)
++.|.++.+.-. ++|+. .-..|+.+-+. .-+...|...-.+..+ +.||.+. -..-..++.+.|++.+
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rK 281 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRK 281 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhh
Confidence 888888877544 34433 22223332221 2345566665555554 6777643 3344568899999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH--HH--HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA--AK--IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485 (662)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A--~~--~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 485 (662)
+-.+++.+-+. .|.+..+...+ +.+.|+.... .. -+..|+ +.+..+--++..+-...|++..|..-.+.+
T Consensus 282 g~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 282 GSKILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred hhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999753 56666544333 3455543221 11 123333 335666777778888999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHH
Q 006076 486 FELEPTNAGNYVLLADVYAAA-DMWDEVKRVKRLLE 520 (662)
Q Consensus 486 ~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~ 520 (662)
....|. .+.|..|.++-... |+-.++...+-+-.
T Consensus 356 ~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 356 AREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred hhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 999997 57899999887655 88888877776544
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.91 E-value=0.0095 Score=54.09 Aligned_cols=97 Identities=16% Similarity=0.251 Sum_probs=71.2
Q ss_pred HHHHhhC--CCCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcC-------------
Q 006076 345 QCVFDHM--DKRDVVSWNSLISSYGV-----HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA------------- 404 (662)
Q Consensus 345 ~~~~~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 404 (662)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455555 35677777777777764 366777777788888888888888888888876542
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006076 405 ---GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442 (662)
Q Consensus 405 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 442 (662)
.+-+-|++++++|. .+|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 23466788888884 67888888888888888877664
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.90 E-value=0.021 Score=45.90 Aligned_cols=81 Identities=14% Similarity=0.051 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhhhCCC-cCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHhCCCCch
Q 006076 255 SWSAMIACYARNGMAFEALELFREMIMESHDL-CPNSVTMVSVLQACAALA--------ALEQGKMIHGYILRRGLDSIL 325 (662)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~ 325 (662)
|-...|..+...+++.....+|+.+ ++.|+ .|+..+|+.+|.+.++.. .+-....+++.|+..+++|+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqsl--kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSL--KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHH--HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcH
Confidence 4455677777779999999999999 89999 999999999999876543 345667788999999999999
Q ss_pred hHHHHHHHHHHh
Q 006076 326 PVVSALVTMYAR 337 (662)
Q Consensus 326 ~~~~~li~~y~~ 337 (662)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999887765
No 189
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.90 E-value=0.027 Score=51.29 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=80.0
Q ss_pred CcCCHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHH
Q 006076 286 LCPNSVTMVSVLQACA-----ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360 (662)
Q Consensus 286 ~~p~~~t~~~ll~a~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 360 (662)
-..|..+|..++..+. +.|..+-....+..|.+.|+..|..+|+.|++.+=| |.+- -..+|+
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ----------- 109 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ----------- 109 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-----------
Confidence 3456677777777764 346677777788889999999999999999987765 3322 111121
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCH-HHHHHHHHHh
Q 006076 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV-EEGKMLFESM 417 (662)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~~ 417 (662)
++..-| ..+-+-|++++++|...|+.||..|+..|++.+.+.+.. .+..+..-.|
T Consensus 110 ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 110 AEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 111112 234567999999999999999999999999999776643 2333333334
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.59 Score=49.70 Aligned_cols=154 Identities=10% Similarity=0.056 Sum_probs=102.0
Q ss_pred hccCC-CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCC-----CCHhhHHHHHHHHhcCCC
Q 006076 22 IAHLP-PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPN-----PTQHTYELLLLSCTHHNS 95 (662)
Q Consensus 22 i~~y~-~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----p~~~~~~~ll~~~~~~~~ 95 (662)
|+.|. ++++|.+++ -.+.+||. -|..+.+-|++-+..++++.|.. .-...++.+-..++....
T Consensus 743 i~~~~g~feeaek~y-ld~drrDL----------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 743 ISAFYGEFEEAEKLY-LDADRRDL----------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred HhhhhcchhHhhhhh-hccchhhh----------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 44444 999999999 78888875 57778888999999999983221 124567777777777777
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhC
Q 006076 96 LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT 175 (662)
Q Consensus 96 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 175 (662)
++.|.+.+..--. ....+.+|.+...+++-..+-..+++ |....-.|...+...|..++|.+.|-+--.
T Consensus 812 We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~- 880 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSL- 880 (1189)
T ss_pred HHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccC-
Confidence 7877777654321 12356666666677777666666665 334455677778888888888887765421
Q ss_pred CCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHH
Q 006076 176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211 (662)
Q Consensus 176 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~ 211 (662)
| ...+.+|..+.+ +.+|.++-+
T Consensus 881 -----p-----kaAv~tCv~LnQ----W~~avelaq 902 (1189)
T KOG2041|consen 881 -----P-----KAAVHTCVELNQ----WGEAVELAQ 902 (1189)
T ss_pred -----c-----HHHHHHHHHHHH----HHHHHHHHH
Confidence 1 234556666665 666655543
No 191
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.034 Score=55.15 Aligned_cols=263 Identities=11% Similarity=0.007 Sum_probs=156.0
Q ss_pred HHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCC-HHHHHHHHHHHHccCC
Q 006076 230 DMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN-SVTMVSVLQACAALAA 305 (662)
Q Consensus 230 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~-~~t~~~ll~a~~~~~~ 305 (662)
+.+.+..++.+|.+.+....+ .+..-|..-...+..-|++++|+--.+.-. .++|. +.+..-.-+.+...++
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~----r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSV----RLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhe----ecCCCccccccchhhhhhhhHH
Confidence 455666777777777765542 245556677777777788877776665431 22232 2234444444555555
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCChhHHHHHH-HHHHhcCChHHHHHHH
Q 006076 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-----KRDVVSWNSLI-SSYGVHGYGGKAIQIF 379 (662)
Q Consensus 306 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li-~~~~~~g~~~~A~~~~ 379 (662)
..+|.+.++. ...+ ....|...++.+. +|...+|..+- .++.-.|+.++|...-
T Consensus 133 ~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 5555554441 0000 0111111122111 13333444332 3455567777777766
Q ss_pred HHHHHcCCCCCHhHHHHHHH--HHhcCCCHHHHHHHHHHhHHhcCCCCChHH-------------HHHHHHHHhhcCCHH
Q 006076 380 KEMIYHGVSPSPISFVSVLG--ACSHAGLVEEGKMLFESMRKEHMIRPSVEH-------------YACMVDLLGRANKLE 444 (662)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~ 444 (662)
-..++. .++. .+..+++ ++-..++.+.|...|++..+ +.|+-.. +..=.+...+.|++.
T Consensus 193 ~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 193 IDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 655552 2221 1222222 33345667777777776652 3343221 122234567889999
Q ss_pred HHHHHHHhc-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076 445 EAAKIIEDL-RI-----EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 445 ~A~~~~~~m-~~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (662)
+|.+.+.+. .+ +|+...|.....+..+.|+.++|+.--+.+++++|.-..+|..-++++...++|++|.+-+++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876 33 445566766677778889999999999999999988888888888899999999999998887
Q ss_pred HHhC
Q 006076 519 LEAR 522 (662)
Q Consensus 519 m~~~ 522 (662)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 7654
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.85 E-value=0.014 Score=59.94 Aligned_cols=74 Identities=20% Similarity=0.189 Sum_probs=34.6
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 006076 330 ALVTMYARCGKLELGQCVFDHMDK----RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403 (662)
Q Consensus 330 ~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (662)
++|..|.+.|..+.+..++..=.. ||..++|.|++.+.+.|++..|.++..+|..++.-.+..|+..-+.+|.+
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 444444444444444444443221 44444555555555555555555555555444444444444444444433
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.84 E-value=0.055 Score=57.93 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=98.6
Q ss_pred cCCCCCHhHHHHHHHHHhcC-----CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc--------CCHHHHHHHH
Q 006076 385 HGVSPSPISFVSVLGACSHA-----GLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLGRA--------NKLEEAAKII 450 (662)
Q Consensus 385 ~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~ 450 (662)
.+.+.|...|...+.+.... +..+.|..+|++..+ ..|+ ...|..+..+|... .++..+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34566778888888875543 237799999999986 3675 34455444433221 1234445554
Q ss_pred Hhc---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 451 EDL---R-IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 451 ~~m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
.+. + ...++..|..+.-.....|++++|...++++++++|+ ...|..++.+|...|+.++|...+++....+.
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 442 1 2345677888877777889999999999999999994 78999999999999999999999998876543
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.81 E-value=0.0021 Score=47.84 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=34.4
Q ss_pred cCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHH
Q 006076 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGS 464 (662)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 464 (662)
..|++++|.++|+.+.... +.+...+..++.+|.+.|++++|.++++++ ...|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 4566666666666665442 335556666666666666666666666666 23455444433
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.79 E-value=0.049 Score=45.41 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=67.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHh
Q 006076 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLG 438 (662)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~ 438 (662)
+..++-..|+.++|+.+|++....|+.... ..+..+.+++...|++++|..+++.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677889999999999999998876653 4667777888899999999999998876531100 2233333455778
Q ss_pred hcCCHHHHHHHHHhc
Q 006076 439 RANKLEEAAKIIEDL 453 (662)
Q Consensus 439 ~~g~~~~A~~~~~~m 453 (662)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 889999998877543
No 196
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.78 E-value=1.2 Score=49.04 Aligned_cols=210 Identities=11% Similarity=0.092 Sum_probs=130.2
Q ss_pred CchhhHHhhhhccCCCCccccCCCChHHHHHHH--HhCCCchHHHHHHh--cCCC-CCHhhHHHHHHHHhcCCChHHHHH
Q 006076 27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSL--CKQGNLRQALDVLS--IEPN-PTQHTYELLLLSCTHHNSLSDALN 101 (662)
Q Consensus 27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~--~~~~-p~~~~~~~ll~~~~~~~~~~~a~~ 101 (662)
.+..|.+-. +....+.|.. .|...+.++ .|.|+.++|..+++ .+.+ .|..|...+-..|...+..+++..
T Consensus 24 qfkkal~~~-~kllkk~Pn~----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 24 QFKKALAKL-GKLLKKHPNA----LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHH-HHHHHHCCCc----HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 445555555 5554444433 255566665 57999999999998 3332 377888888888899999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHhhcCCChH----HHHHHHhcCCCCCcchHHHHHHHHHhc-CCc---------cHHHH
Q 006076 102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVD----DARHVFDKTRRRTIYVWNALFRALTLA-GRG---------EEVLE 167 (662)
Q Consensus 102 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~---------~~A~~ 167 (662)
++++.... .|+......+..+|.|.+++. .|.++++..+++--.-|+. ++...+. ..+ .-|..
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHH
Confidence 99998875 466777788888888887665 4677787776654455554 3333332 222 23445
Q ss_pred HHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHH-HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 006076 168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS-VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS 246 (662)
Q Consensus 168 l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 246 (662)
.++.+.+.+ |-.-+..-.-.-+..+...+. .++|..++.. ....-...+...-+--++++.+++++.+-.++-.
T Consensus 176 m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k----~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 176 MVQKLLEKK-GKIESEAEIILYLLILELQGK----YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHhccC-CccchHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 566666653 311111111122222334455 8888887743 3333234445555677788888888887666655
Q ss_pred cCC
Q 006076 247 QMA 249 (662)
Q Consensus 247 ~~~ 249 (662)
++.
T Consensus 251 ~Ll 253 (932)
T KOG2053|consen 251 RLL 253 (932)
T ss_pred HHH
Confidence 544
No 197
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=1.1 Score=48.40 Aligned_cols=317 Identities=12% Similarity=0.071 Sum_probs=183.0
Q ss_pred CCCCChhhHHH-----HHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---HHHHHHHHHcCC
Q 006076 178 GIRSDRFTYTY-----VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC---VMYAGFVFSQMA 249 (662)
Q Consensus 178 g~~p~~~t~~~-----ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~ 249 (662)
|++.+..-|.. +++-+...+. +..|.++-..+-..-... ..++.....-+.+..+ -+-+.++=+++.
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~----Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHL----YSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcch----hHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 66665555543 3444444444 666666655443111111 4666666666766532 233444444555
Q ss_pred C--CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCC-cC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC---
Q 006076 250 V--KNVVSWSAMIACYARNGMAFEALELFREMIMESHDL-CP---NSVTMVSVLQACAALAALEQGKMIHGYILRRG--- 320 (662)
Q Consensus 250 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--- 320 (662)
. .+.++|..+..---+.|+.+-|..+++.= ...+. .| +..-+...+.-+...|+.+...+++-.+.+.-
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E--~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s 579 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELE--PRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS 579 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcC--CCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 4 46678888888888889999998887643 22221 11 22334556667777788777777666554321
Q ss_pred --------CCCchhHHHHHHH---------HHHhcCChHHHHHHH--hhCC-----CCChhHHHHHHHHHHhcCC---hH
Q 006076 321 --------LDSILPVVSALVT---------MYARCGKLELGQCVF--DHMD-----KRDVVSWNSLISSYGVHGY---GG 373 (662)
Q Consensus 321 --------~~~~~~~~~~li~---------~y~~~g~~~~A~~~~--~~m~-----~~~~~~~~~li~~~~~~g~---~~ 373 (662)
.+.....|.-++. .|- .++-..+...| +... ++-..........|++... .+
T Consensus 580 ~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 580 SLFMTLRNQPLALSLYRQFMRHQDRATLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHHHhchhhhHHHHHHHHhhchhhhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHH
Confidence 1111122222221 111 11111111111 1100 1111222333444444333 11
Q ss_pred HH-------HHHHHHHHH-cCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006076 374 KA-------IQIFKEMIY-HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445 (662)
Q Consensus 374 ~A-------~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 445 (662)
+| +.+.+.+.. .|..-...|.+--+.-+...|+..+|.++-...+ -||-..|-.-+.+++..+++++
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHH
Confidence 22 222333322 2334455666777777888899999988876663 4888899999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 446 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (662)
-+++-++++ .+.-|.-+..+|.+.|+.++|...+-+.-.+. -.+.+|.+.|++.+|.+.--+
T Consensus 734 LekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 734 LEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHH
Confidence 888877764 25567778899999999999988876653322 568899999999999887543
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.71 E-value=0.015 Score=57.38 Aligned_cols=129 Identities=12% Similarity=-0.038 Sum_probs=92.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHhH---HhcCCC-CChHHHHHHHHHHhhcCCHHHHHHHHHhc-------C-CCCCH
Q 006076 392 ISFVSVLGACSHAGLVEEGKMLFESMR---KEHMIR-PSVEHYACMVDLLGRANKLEEAAKIIEDL-------R-IEPGP 459 (662)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~ 459 (662)
..|..|.+.|.-.|+++.|+..++.-. +++|=. .....+..|.+.+.-.|.++.|.+.|+.. + .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666666677789999988776432 333322 13456788889999999999999888754 2 12244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 460 KVWGSLLGSCRIHCNVELAERASKRLFE----LE--PTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
.+..+|.++|....+++.|+..+.+-+. ++ .....++.+|+++|...|..+.|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5667888888888889999988876543 22 1235688899999999999999988877543
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.69 E-value=0.15 Score=53.40 Aligned_cols=230 Identities=11% Similarity=0.115 Sum_probs=119.0
Q ss_pred hHHHHHHHHhCCCchHHHHHHhcCCC-----------CCHhhHHHHHHHHhcCCChHHHHHH--HHHHHHhCCCCChhHH
Q 006076 52 KNELIQSLCKQGNLRQALDVLSIEPN-----------PTQHTYELLLLSCTHHNSLSDALNV--HSHLTDNGFDQDPFLV 118 (662)
Q Consensus 52 ~~~li~~~~~~g~~~~A~~~~~~~~~-----------p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~ 118 (662)
+.+-+-.|...|.+++|.++-..++. .+.-.++..=++|.+.++..--+-+ ++.+.+.|-.|+....
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl 638 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL 638 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH
Confidence 44466778888888888876553222 1233344455566665554433322 3455666766766543
Q ss_pred HHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCC
Q 006076 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198 (662)
Q Consensus 119 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~ 198 (662)
...++-.|++.+|.++|.+ +|.-..|+++|..|+-- . ...-+...++
T Consensus 639 ---A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF-----------D-~aQE~~~~g~ 685 (1081)
T KOG1538|consen 639 ---ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF-----------D-YAQEFLGSGD 685 (1081)
T ss_pred ---HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-----------H-HHHHHhhcCC
Confidence 3344556788888888754 56667777777776432 0 1112222232
Q ss_pred CccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006076 199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278 (662)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (662)
-++-+.+...--. ...++.--.+-..++...|+.++|..+. ..+|-.+-+.++-++
T Consensus 686 ----~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rk 741 (1081)
T KOG1538|consen 686 ----PKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARK 741 (1081)
T ss_pred ----hHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhh
Confidence 2222222211111 0111111123344555566666665442 233333444444333
Q ss_pred HhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006076 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353 (662)
Q Consensus 279 m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 353 (662)
+ . ..+..+...+..-+-+...+..|-++|..|-+. .+++++....+++.+|..+-+..++
T Consensus 742 l--d----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 742 L--D----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred c--c----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3 1 122333434444444555666666666655332 3467777888888888888888775
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.68 E-value=0.24 Score=43.75 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006076 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351 (662)
Q Consensus 288 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 351 (662)
|+...-..+..+....|+..+|...|++...--+..|..+.-.+.++....+++..|...++.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4444444444555555555555555555444334444444444444444444444444444433
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.66 E-value=0.0057 Score=45.57 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHC-NVELAERASKRLFELEP 490 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 490 (662)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567777888888888888888888876 3344 5667888888888888 68899999999888877
No 202
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.65 E-value=0.063 Score=46.61 Aligned_cols=93 Identities=9% Similarity=-0.005 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcC
Q 006076 328 VSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA 404 (662)
Q Consensus 328 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 404 (662)
.-++..-+...|++++|.++|+.+.. -+..-|-.|..++...|++++|+..|....... +-|...+-.+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 33455556678899999988887653 355678888888888999999999998888854 23456777778888889
Q ss_pred CCHHHHHHHHHHhHHhc
Q 006076 405 GLVEEGKMLFESMRKEH 421 (662)
Q Consensus 405 g~~~~a~~~~~~~~~~~ 421 (662)
|+.+.|++.|+......
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999888877543
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.59 E-value=0.26 Score=49.71 Aligned_cols=160 Identities=18% Similarity=0.104 Sum_probs=99.3
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC---Ch----hHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 006076 330 ALVTMYARCGKLELGQCVFDHMDKR---DV----VSWNSLISSYGV---HGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399 (662)
Q Consensus 330 ~li~~y~~~g~~~~A~~~~~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (662)
.|+-.|-...+++...++.+.+... ++ ..--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777778888887777642 11 111223344555 7888888888888666556677777776665
Q ss_pred HHhc---------CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH----HHHHHH---Hhc----C---CC
Q 006076 400 ACSH---------AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE----EAAKII---EDL----R---IE 456 (662)
Q Consensus 400 a~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~---~~m----~---~~ 456 (662)
.|-. ....++|...+.+.- .+.|+..+--.++..+...|... +..++- ... + -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5432 223666776666543 35566555444444555555322 222222 111 1 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
.|-..+.+++.++.-.|+.+.|.+.++++..+.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 456667789999999999999999999999998774
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.56 E-value=0.011 Score=60.09 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGP----KVWGSLLGSCRIHCNVELAERASKRLFEL 488 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (662)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666666666666666666653 445543 24666666666666666666666666665
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.54 E-value=0.24 Score=47.55 Aligned_cols=174 Identities=12% Similarity=0.070 Sum_probs=103.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--CChh-H---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 006076 330 ALVTMYARCGKLELGQCVFDHMDK--RDVV-S---WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403 (662)
Q Consensus 330 ~li~~y~~~g~~~~A~~~~~~m~~--~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (662)
.....+.+.|++++|.+.|+.+.. |+.. . .-.++.+|.+.+++++|...|++..+.-..-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344455667888888888887763 3221 1 234556677888888888888888774322222344444444331
Q ss_pred --CC---------------C---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHH
Q 006076 404 --AG---------------L---VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG 463 (662)
Q Consensus 404 --~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 463 (662)
.+ + ..+|.+.|+.+++.+ |+ ..-..+|...+..+...--..- -
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~e-~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKYE-L 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHHH-H
Confidence 11 1 123444444444432 22 2333444443333310000001 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 464 SLLGSCRIHCNVELAERASKRLFELEPTNA---GNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
.+..-|.+.|.+..|..-++.+++.-|+.+ .+...++++|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 344557888999999999999998877643 466788999999999999999887665
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.54 E-value=0.041 Score=45.88 Aligned_cols=85 Identities=16% Similarity=-0.025 Sum_probs=47.8
Q ss_pred HHHHhhcCCHHHHHHHHHhc---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHh
Q 006076 434 VDLLGRANKLEEAAKIIEDL---RIEPG--PKVWGSLLGSCRIHCNVELAERASKRLFELEPT---NAGNYVLLADVYAA 505 (662)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 505 (662)
..++-..|+.++|+.+|++. +.... ...+-.+.+++...|+.++|..++++.....|+ +......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455556666666666554 11111 223444556666667777777777666665555 33444445556666
Q ss_pred cCChHHHHHHHHH
Q 006076 506 ADMWDEVKRVKRL 518 (662)
Q Consensus 506 ~g~~~~A~~~~~~ 518 (662)
.|+.+||.+.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 6777776665543
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.48 E-value=0.028 Score=54.34 Aligned_cols=92 Identities=11% Similarity=0.037 Sum_probs=50.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHH
Q 006076 430 YACMVDLLGRANKLEEAAKIIEDL-RIEPGP----KVWGSLLGSCRIHCNVELAERASKRLFELEPTN---AGNYVLLAD 501 (662)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 501 (662)
|..-+..+.+.|++++|...|+.+ ...|+. ..+.-+..+|...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444455666666555554 112221 233345556666666666666666666655553 334444556
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 006076 502 VYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 502 ~~~~~g~~~~A~~~~~~m~~ 521 (662)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.42 E-value=0.012 Score=44.36 Aligned_cols=63 Identities=21% Similarity=0.315 Sum_probs=49.0
Q ss_pred HHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 006076 435 DLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV 497 (662)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (662)
..|.+.+++++|.++++.+ ...| ++..|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677888888888888877 3444 5666777888888889999999999999998887655443
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.40 E-value=0.0063 Score=40.57 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 006076 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501 (662)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (662)
.+|..+..+|...|++++|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999888777654
No 210
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.40 E-value=0.88 Score=43.66 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=34.8
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHH-H---HHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 006076 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV-T---MVSVLQACAALAALEQGKMIHGYILRRG 320 (662)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~-t---~~~ll~a~~~~~~~~~a~~~~~~~~~~g 320 (662)
+...+-.....+.+.|++++|++.|+++ ... -|+.. . .-.+..++-+.++++.|...++..++.-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l--~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEAL--DNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3333334445556677777777777776 322 23221 1 1233445556666666666666666553
No 211
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=2.3 Score=46.01 Aligned_cols=330 Identities=13% Similarity=0.059 Sum_probs=169.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCC---hHHHHHHHhcCCC--CCcchHHHHHHHHHhcC
Q 006076 86 LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS---VDDARHVFDKTRR--RTIYVWNALFRALTLAG 160 (662)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 160 (662)
++.-+...+.+..|.++-..+...-... ..++.....-+.+..+ -+.+..+=+++.. ...++|..+.+-.-..|
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 3444555667777777766654321122 5667777777766532 2333444444544 45678888888888889
Q ss_pred CccHHHHHHHHHhhCCCCC--CCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 006076 161 RGEEVLELYRRMNGTGTGI--RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238 (662)
Q Consensus 161 ~~~~A~~l~~~m~~~~~g~--~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 238 (662)
+++-|..+++.=...+..+ -.+..-+...|.-+...++ .+...++.-++.+.-. .-+.+.-..+.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d----~~Li~~Vllhlk~~~~---------~s~l~~~l~~~ 588 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGD----TDLIIQVLLHLKNKLN---------RSSLFMTLRNQ 588 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCC----chhHHHHHHHHHHHHH---------HHHHHHHHHhc
Confidence 9988888776322110000 0111223333334444444 4443333333322100 00001111223
Q ss_pred HHHHHHHHcCCC-CCHhHHHHHHHHHHHcCChhHHHHHHH--HHhh--hhCCCcCCHHHHHHHHHHHHccCCHHHHHH--
Q 006076 239 MYAGFVFSQMAV-KNVVSWSAMIACYARNGMAFEALELFR--EMIM--ESHDLCPNSVTMVSVLQACAALAALEQGKM-- 311 (662)
Q Consensus 239 ~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~--~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~-- 311 (662)
..|..+|.+... .|..+ +..+-+.++-.+++.-|. .... ...+..|+. ....++|++........+
T Consensus 589 p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHH
Confidence 344444444322 12111 111222333333333222 1000 012333333 233444544443211111
Q ss_pred --------HHHHHH-HhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006076 312 --------IHGYIL-RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM 382 (662)
Q Consensus 312 --------~~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 382 (662)
+.+.+. +.|..-...+.+--+.-+...|+..+|.++-.+.+-||-..|--=+.+++..+++++-+++-+.+
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 111111 12222222233334445666788888999888888888888888888888888888776665554
Q ss_pred HHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 006076 383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452 (662)
Q Consensus 383 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (662)
. .+.-|.-...+|.+.|+.++|.+++.+.. |. . -.+.+|.+.|++.+|.++--+
T Consensus 742 k------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l---~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 742 K------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL---Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred C------CCCCchhHHHHHHhcccHHHHhhhhhccC---Ch---H----HHHHHHHHhccHHHHHHHHHH
Confidence 3 14566777888999999999988876552 11 1 567888888888888776544
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.37 Score=45.09 Aligned_cols=164 Identities=9% Similarity=-0.009 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 006076 328 VSALVTMYARCGKLELGQCVFDHMDK----------RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397 (662)
Q Consensus 328 ~~~li~~y~~~g~~~~A~~~~~~m~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 397 (662)
+++|+..|.-..-+++-...|+.-.. +-...-+.++..+.-.|.+.-.+.++++..+...+-+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45566666555445554444443322 12233456666677778888888888888886555566777778
Q ss_pred HHHHhcCCCHHHHHHHHHHhHHhcC----CCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCC-CC-CHHHHHHHHHHHHh
Q 006076 398 LGACSHAGLVEEGKMLFESMRKEHM----IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI-EP-GPKVWGSLLGSCRI 471 (662)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~~~~~ 471 (662)
.+.-.+.|+.+.|..+|+...+..+ +.-...+.......|.-++++.+|...+.+.+. .| |+..-|.-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888889999999999987754432 222233333344455566677777777766632 22 33333333333334
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 006076 472 HCNVELAERASKRLFELEPT 491 (662)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~ 491 (662)
.|+...|.+..+.+.+..|.
T Consensus 299 lg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHHhccCCc
Confidence 46677777777777777765
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.14 E-value=0.09 Score=50.89 Aligned_cols=98 Identities=10% Similarity=0.099 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC----CHHHHH
Q 006076 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS----VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP----GPKVWG 463 (662)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~ 463 (662)
.|...+....+.|++++|...|+.+.+.+ |+ ...+..+...|...|++++|...|+.+ ...| ....+-
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444433344567777777777776543 32 245566677777777777777777766 1122 234444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076 464 SLLGSCRIHCNVELAERASKRLFELEPTNA 493 (662)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (662)
.+...+...|+.+.|...++++++..|++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 556667788888888888888888888753
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.34 Score=45.30 Aligned_cols=225 Identities=8% Similarity=0.001 Sum_probs=117.5
Q ss_pred cchHHHHHHHHHhcCCccHHHHHHHHHhhCC---------CCCCCChhhHHHHHHHHHhCCCCccchHHH-HHHHHHHHH
Q 006076 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTG---------TGIRSDRFTYTYVLKACVASSCGFSLLKHG-KEIHASVLR 215 (662)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---------~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a-~~~~~~~~~ 215 (662)
...|+.-+..+++....++|..-+....+.+ |.+-||.. | ..+.-+ +-+|.++.+
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rr------------G---SmVPFsmR~lhAe~~~ 133 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRR------------G---SMVPFSMRILHAELQQ 133 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCc------------C---ccccHHHHHHHHHHHH
Confidence 3456666777777777777765555554331 01222211 1 112222 334444443
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC--CH--------hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCC
Q 006076 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK--NV--------VSWSAMIACYARNGMAFEALELFREMIMESHD 285 (662)
Q Consensus 216 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 285 (662)
.- ..-+++|...|.-..-+++-.+.|+.-..+ .+ ..-+.++..+.-.|.+.-.+.++++. ....
T Consensus 134 ~l----gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~v--i~~~ 207 (366)
T KOG2796|consen 134 YL----GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSV--IKYY 207 (366)
T ss_pred hc----CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHH--HHhC
Confidence 31 123566777666555555555555543221 22 22345555566666666677777776 3433
Q ss_pred CcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHH-----HHHHHHHhcCChHHHHHHHhhCCC---CChh
Q 006076 286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS-----ALVTMYARCGKLELGQCVFDHMDK---RDVV 357 (662)
Q Consensus 286 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-----~li~~y~~~g~~~~A~~~~~~m~~---~~~~ 357 (662)
-+.++.....+.+.-.+.|+.+.|...++...+..-..+....+ .....|.-.+++..|...|.+++. .|++
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 34455556666666667777777777777665543222222222 223334455666666666666653 3444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (662)
.-|.=.-+..-.|+..+|++....|.. ..|...+
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l 321 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYL 321 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccch
Confidence 444444444445666777777777766 3444433
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.96 E-value=0.099 Score=44.10 Aligned_cols=50 Identities=10% Similarity=0.182 Sum_probs=31.5
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436 (662)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 436 (662)
..|+..+..+++.+++..|++..|.++.+...+.++++-+...|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45666666666666666666666666666666666665555556555543
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.95 E-value=1.4 Score=41.01 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=27.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 006076 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319 (662)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 319 (662)
....+.+.|++++|.+.|+.+...-.+-+--......+..++-+.|+++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344555666666666666663111111111222333444455555555555555555443
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.87 E-value=2.2 Score=42.53 Aligned_cols=287 Identities=16% Similarity=0.077 Sum_probs=160.4
Q ss_pred HHHHHHHHHh--cCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhH--
Q 006076 149 WNALFRALTL--AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI-- 224 (662)
Q Consensus 149 ~~~li~~~~~--~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-- 224 (662)
|.+|-.|+.. .|+-..|.++-.+-... +..|...+..+|.+-+..- .|+.+.+++-|+.|... |....
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l---lssDqepLIhlLeAQaal~--eG~~~~Ar~kfeAMl~d---PEtRllG 156 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL---LSSDQEPLIHLLEAQAALL--EGDYEDARKKFEAMLDD---PETRLLG 156 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHh--cCchHHHHHHHHHHhcC---hHHHHHh
Confidence 3344444433 35555555555544332 4455556666665544321 12277777777766632 11111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHH--HHHHHHH
Q 006076 225 MTTLIDMYARFGCVMYAGFVFSQMAVK---NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT--MVSVLQA 299 (662)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t--~~~ll~a 299 (662)
...|.----+.|..+.|...-+..-.. -...|.+.+...+..|+++.|+++++.-. ...-+.++..- -..+|.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~-~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR-AAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH-HHHhhchhhHHHHHHHHHHH
Confidence 111222223557777776666554322 34567788888899999999999888763 23334555432 2223332
Q ss_pred HH--c-cCCHHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChH
Q 006076 300 CA--A-LAALEQGKMIHGYILRRGLDSILPV-VSALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGG 373 (662)
Q Consensus 300 ~~--~-~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~ 373 (662)
-+ . ..+...|+..-.+..+ +.||..- -..-...|.+.|++.++-++++.+-+ |.+..|. +-.+.+.|+
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd-- 309 (531)
T COG3898 236 KAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD-- 309 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--
Confidence 21 1 1244555555544444 3444322 22335678888888888888888753 4443332 223344444
Q ss_pred HHHHHHHHHHH-cCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc-CCHHHHHHHH
Q 006076 374 KAIQIFKEMIY-HGVSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA-NKLEEAAKII 450 (662)
Q Consensus 374 ~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~ 450 (662)
.++.-+++... ..++||. .+...+..+-...|++..|+.--+.... ..|....|..|.+.-... |+-.++...+
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 44444444433 2256654 5666677777788888887776666543 467788888777766444 7888888777
Q ss_pred Hhc
Q 006076 451 EDL 453 (662)
Q Consensus 451 ~~m 453 (662)
.+.
T Consensus 387 Aqa 389 (531)
T COG3898 387 AQA 389 (531)
T ss_pred HHH
Confidence 765
No 218
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.78 E-value=0.95 Score=37.71 Aligned_cols=139 Identities=13% Similarity=0.090 Sum_probs=81.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006076 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447 (662)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 447 (662)
-.|..++..++..+..... +..-++.++--....-+-+-..+.++.+-+.+.+ ..+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHHH
Confidence 3566667777776665532 3344444444333334444445555555333222 2455555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006076 448 KIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525 (662)
Q Consensus 448 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 525 (662)
..+-.++ .+......-+......|+.+.-.+++..+...+..+|....-++.+|.+.|...++.+++++.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5555543 234445566778888999999888988888655556889999999999999999999999999999874
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.73 E-value=0.019 Score=43.95 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 460 KVWGSLLGSCRIHCNVELAERASKRLFEL----EPT---NAGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
.+++.+...|...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566666677777777777777766543 221 23466677888888888888888777654
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.60 E-value=0.059 Score=47.22 Aligned_cols=61 Identities=25% Similarity=0.195 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
....++..+...|++++|...+++++..+|-+...|..++.+|...|+..+|.++++.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556777788899999999999999999999999999999999999999999999998764
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.56 E-value=0.13 Score=43.42 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=32.2
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc----CCCCCHHHHHHHHHHHH
Q 006076 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDL----RIEPGPKVWGSLLGSCR 470 (662)
Q Consensus 422 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~ 470 (662)
.+.|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.=+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35567777777777777777777777776654 44445667776665443
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.14 Score=51.19 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
..++..|..+|.+.+++..|+...++.++++|+|..+...-+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345667777888999999999999999999999999999999999999999999999999886
No 223
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.46 E-value=0.28 Score=48.76 Aligned_cols=128 Identities=17% Similarity=0.024 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCChHHHHHHHhhCC-------CC--Ch
Q 006076 291 VTMVSVLQACAALAALEQGKMIHGYILR----RGLD-SILPVVSALVTMYARCGKLELGQCVFDHMD-------KR--DV 356 (662)
Q Consensus 291 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~--~~ 356 (662)
..|..+-+.|.-+|+++.|...|+.-+. .|-. .....+..|.++|.-.|+++.|.+.|+... .+ ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455666666677888888887765432 2321 234566778888888899998888776532 23 23
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhH
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIY----HG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 418 (662)
.+.-+|...|.-...+++|+.++.+-+. .+ ..-....+-+|..++...|..++|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4566788888888888888888765432 11 12234667788888888898888887766543
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.42 E-value=0.03 Score=42.80 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhc-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076 428 EHYACMVDLLGRANKLEEAAKIIEDL-------R-IEPG-PKVWGSLLGSCRIHCNVELAERASKRLFE 487 (662)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (662)
.+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|+.++|+..+++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555666666666665555543 1 1122 34566666677777777777777776654
No 225
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=3.7 Score=41.35 Aligned_cols=85 Identities=16% Similarity=0.026 Sum_probs=49.2
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC
Q 006076 366 YGVHGYGGKAIQIFKEMIYH---GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLGRAN 441 (662)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 441 (662)
..++|++.+|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.--+...+ +.|. +..|-.-..++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777652 2333444555555666777777777776666642 2221 122222233444556
Q ss_pred CHHHHHHHHHhc
Q 006076 442 KLEEAAKIIEDL 453 (662)
Q Consensus 442 ~~~~A~~~~~~m 453 (662)
+|++|.+-+++.
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.28 E-value=1.1 Score=41.72 Aligned_cols=161 Identities=16% Similarity=0.092 Sum_probs=80.8
Q ss_pred HHhcCChHHHHHHHhhCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhc---
Q 006076 335 YARCGKLELGQCVFDHMDK--RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSH--- 403 (662)
Q Consensus 335 y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~--- 403 (662)
+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...|+++.+. -|+. ..+...+.+.+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHHh
Confidence 4455666666666665542 11 123444556666667777777777666653 2222 222222222211
Q ss_pred ----------CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006076 404 ----------AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC 473 (662)
Q Consensus 404 ----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 473 (662)
.+...+|...|+.+. .-|=......+|...+..+...--.. --.+..-|.+.|
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li----------------~~yP~S~y~~~A~~~l~~l~~~la~~-e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELI----------------KRYPNSEYAEEAKKRLAELRNRLAEH-ELYIARFYYKRG 155 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHH----------------HH-TTSTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTT
T ss_pred CccchhcccChHHHHHHHHHHHHHH----------------HHCcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcc
Confidence 111223333444333 33333344445544444332000000 112445678888
Q ss_pred CHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCChHHHHH
Q 006076 474 NVELAERASKRLFELEPTNAG---NYVLLADVYAAADMWDEVKR 514 (662)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 514 (662)
.+..|..-++.+++.-|+.+. +...|+..|.+.|..+.|..
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999988887543 45678888889988875443
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.03 E-value=0.21 Score=47.15 Aligned_cols=102 Identities=20% Similarity=0.155 Sum_probs=83.2
Q ss_pred hHHHHHHHhhCC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCC--------
Q 006076 341 LELGQCVFDHMD--KRDVVSWNSLISSYGVH-----GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG-------- 405 (662)
Q Consensus 341 ~~~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-------- 405 (662)
+-..++.|.... ++|-.+|-+++..|..+ +.++-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 344567788777 68889999999988754 566667778899999999999999999999876542
Q ss_pred --------CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 006076 406 --------LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443 (662)
Q Consensus 406 --------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 443 (662)
.-+-++.+++.| +.+|+.||-++-..|++++++.|..
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 234578899999 4789999999999999999998864
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.03 E-value=0.15 Score=52.03 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=45.7
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV----EHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
+...++.+..+|.+.|++++|...|+...+ +.|+. ..|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346777777888888888888888888764 35653 24778888888888888888887776
No 229
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.42 Score=46.00 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=16.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384 (662)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (662)
|...|-.|...|...|+++.|...|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444555555555555555555555555554
No 230
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.90 E-value=6.2 Score=41.84 Aligned_cols=418 Identities=11% Similarity=0.052 Sum_probs=222.2
Q ss_pred CCCccccCCCChHHHHHHHHhCCCchHHHHHHh--cCCCCCHhhH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH
Q 006076 41 STTPTSLSSRNKNELIQSLCKQGNLRQALDVLS--IEPNPTQHTY-ELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL 117 (662)
Q Consensus 41 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 117 (662)
..+....+. |+++|.---+....+.+...+. -...|..+-| -....-=.+.|..+.+.++|++-+.. ++.....
T Consensus 39 ~~~~~~f~~--wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~Svdl 115 (577)
T KOG1258|consen 39 SNDSLDFDA--WTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDL 115 (577)
T ss_pred ccchhcccc--hHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHH
Confidence 344444444 6667765544444444444554 2334554443 33333445678889999999988864 6677777
Q ss_pred HHHHHHHhh-cCCChHHHHHHHhcCCC------CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHH
Q 006076 118 VTKLINVYS-HFDSVDDARHVFDKTRR------RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190 (662)
Q Consensus 118 ~~~li~~y~-~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll 190 (662)
|...+.... ..|+.+..++.|+.... .....|...|.--..++++.....+|++.++. | ..-|+...
T Consensus 116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-----P-~~~~~~~f 189 (577)
T KOG1258|consen 116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-----P-LHQLNRHF 189 (577)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh-----h-hhHhHHHH
Confidence 777776655 45777777888876543 24567888888888889999999999999865 1 12222222
Q ss_pred HHHHhCCCC-----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 006076 191 KACVASSCG-----FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC-VMYAGFVFSQMAVKNVVSWSAMIACYA 264 (662)
Q Consensus 191 ~~~~~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~~~~~~~~~~~~li~~~~ 264 (662)
.-+.+.-+. .-..++..++-....... .-...+. .+.-....+....+
T Consensus 190 ~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~------------- 243 (577)
T KOG1258|consen 190 DRFKQLLNQNEEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDP------------- 243 (577)
T ss_pred HHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCc-------------
Confidence 222111000 000122221111111100 0000000 11111111111111
Q ss_pred HcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHh
Q 006076 265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG-------LDSILPVVSALVTMYAR 337 (662)
Q Consensus 265 ~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-------~~~~~~~~~~li~~y~~ 337 (662)
.+..+++.....+.. . .--.++-........+..++.-+++- ..++..+|...++.-.+
T Consensus 244 -s~~l~~~~~~l~~~~--~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~ 309 (577)
T KOG1258|consen 244 -SKSLTEEKTILKRIV--S-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEIT 309 (577)
T ss_pred -cchhhHHHHHHHHHH--H-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhh
Confidence 011111111111110 0 00000111111112222222222221 12345677777777778
Q ss_pred cCChHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076 338 CGKLELGQCVFDHMDKRD---VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414 (662)
Q Consensus 338 ~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (662)
.|+.+.+.-+|++..-|- ...|--.+.-....|+.+-|-.++....+--++-.+.+-..-..-+-..|+.+.|..++
T Consensus 310 ~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~l 389 (577)
T KOG1258|consen 310 LGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVIL 389 (577)
T ss_pred cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHH
Confidence 888888888888776432 22344444444444888877777766655433222222222222345678999999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH---HHHHhc-CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHH
Q 006076 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA---KIIEDL-RIEPGPKVWGSLLG-----SCRIHCNVELAERASKRL 485 (662)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~ 485 (662)
+.+..+. +--+..-..-+....+.|..+.+. +++... +.+-+..+...+.- -+...++.+.|..++.++
T Consensus 390 q~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~ 467 (577)
T KOG1258|consen 390 QRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEA 467 (577)
T ss_pred HHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9997653 223444455567778888888888 454443 21223222222222 244567899999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCh
Q 006076 486 FELEPTNAGNYVLLADVYAAADMW 509 (662)
Q Consensus 486 ~~~~p~~~~~~~~l~~~~~~~g~~ 509 (662)
.+..|++...|..+++.....+..
T Consensus 468 ~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 468 NDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred hhcCCccHHHHHHHHHHHHhCCcc
Confidence 999999988999988888766633
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.75 E-value=0.24 Score=46.95 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=51.1
Q ss_pred hcCCHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCC
Q 006076 439 RANKLEEAAKIIEDL-------RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT---NAGNYVLLADVYAAADM 508 (662)
Q Consensus 439 ~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 508 (662)
+.|++.+|..-|... ...|+...| |..++...|+++.|...|..+.+-.|+ -+..+.-|+....+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 344455555555543 134556666 666677777777777777777665544 34556666777777777
Q ss_pred hHHHHHHHHHHHhC
Q 006076 509 WDEVKRVKRLLEAR 522 (662)
Q Consensus 509 ~~~A~~~~~~m~~~ 522 (662)
.++|..+++++.++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776653
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.61 Score=46.69 Aligned_cols=138 Identities=13% Similarity=0.022 Sum_probs=97.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006076 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442 (662)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 442 (662)
...|.+.|++..|...|++.... -+ +...-+.++..... ..-..+++.|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677778888888877776552 00 01111112222211 1124467788889999999
Q ss_pred HHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHH-HHHHHHH
Q 006076 443 LEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV-KRVKRLL 519 (662)
Q Consensus 443 ~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m 519 (662)
+.+|+..-+.. .. ++|....--=..+|...|+++.|+..|+++++++|+|-.+-.-|+.+-.+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888766 33 457777767788999999999999999999999999988888888887777666655 7788888
Q ss_pred HhC
Q 006076 520 EAR 522 (662)
Q Consensus 520 ~~~ 522 (662)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 653
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.67 E-value=3.7 Score=38.21 Aligned_cols=195 Identities=17% Similarity=0.106 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 006076 325 LPVVSALVTMYARCGKLELGQCVFDHMD-----KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399 (662)
Q Consensus 325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (662)
..........+...+.+..+...+.... ......+..+...+...++...+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455555666666666666666655543 23334555555566666666777777776665332221 11222222
Q ss_pred -HHhcCCCHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC--HHHHHHHHHHHHhcC
Q 006076 400 -ACSHAGLVEEGKMLFESMRKEHMI--RPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG--PKVWGSLLGSCRIHC 473 (662)
Q Consensus 400 -a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g 473 (662)
++...|+++.+...+..... ..- ......+......+...++.++|...+.+. ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56677777777777777643 110 112333444444466677777777777766 22333 566677777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 474 NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
+.+.+...+.......|.....+..+...+...|.++++...+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888877776445566666666666677777777776654
No 234
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.66 E-value=0.4 Score=39.70 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=68.3
Q ss_pred HHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC---cchHHHHHHHHHhcCC
Q 006076 435 DLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELE-PTN---AGNYVLLADVYAAADM 508 (662)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~ 508 (662)
-+++..|++++|++.|.+. .+- .....||.-..+++-.|+.++|+.-+++++++. |.. ..+|+.-+.+|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567788888888888776 223 367788888888888999999999888888865 332 2356667778888899
Q ss_pred hHHHHHHHHHHHhCCC
Q 006076 509 WDEVKRVKRLLEARGL 524 (662)
Q Consensus 509 ~~~A~~~~~~m~~~~~ 524 (662)
-+.|..=|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999888887776553
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.63 E-value=1 Score=38.51 Aligned_cols=59 Identities=24% Similarity=0.166 Sum_probs=38.4
Q ss_pred HHhhcCCHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 006076 436 LLGRANKLEEAAKIIEDL----RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494 (662)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (662)
...+.|++++|.+.|+.+ |..| ....--.|+.++...+++++|...+++.++++|.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344566777777777666 2222 2334445777777888888888888888888776543
No 236
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=9.2 Score=41.86 Aligned_cols=75 Identities=9% Similarity=0.009 Sum_probs=44.2
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccH
Q 006076 88 LSCTHHNSLSDALNVHSHLTDNGFDQ---DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE 164 (662)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 164 (662)
..+.+.+.+++|..+-..... ..| ...++...|..|.-.|++++|-...-.|...+..-|.--+.-++..++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 334444555555544433222 222 234566667777777777777777777777777777777766666666543
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.38 E-value=0.47 Score=41.43 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=30.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhH----HhcCCCCChHH
Q 006076 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR----KEHMIRPSVEH 429 (662)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~ 429 (662)
.++..+...|++++|+.+.+.+.... +-|...+..++.++...|+..+|.++|+.+. ++.|+.|+..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34444555555555555555555531 2234455555555555555555555555442 23345554443
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=2.6 Score=40.59 Aligned_cols=122 Identities=15% Similarity=0.073 Sum_probs=85.6
Q ss_pred HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHH---HHHHHHhcCCHH
Q 006076 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS---LLGSCRIHCNVE 476 (662)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~~ 476 (662)
.....|+..++...|....... +-+...-..|+..|...|+.++|..++..+|.+-...-|.. -|....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4556788888888888886542 33466777888999999999999999999875443333333 222333333333
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 477 LAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
+... +++-...+|+|...-..|+..|...|+.++|.+.+=.+..++.
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 2222 3344556899999999999999999999999998877776543
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.18 E-value=7.5 Score=39.67 Aligned_cols=133 Identities=15% Similarity=0.112 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 435 (662)
..|...+..-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+...|..+|+.-...+ +.+..--+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 456777777777777888999999999988 6677788888887665 578888999998766543 333444456677
Q ss_pred HHhhcCCHHHHHHHHHhc--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 436 LLGRANKLEEAAKIIEDL--RIEPG--PKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
.+.+.++-+.|..+|+.. .+..+ ..+|..+|.--...|+...+..+-+++.++-|..
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 788899999999999855 22333 5678888888888899998988888888888863
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.73 E-value=4.4 Score=43.17 Aligned_cols=159 Identities=18% Similarity=0.096 Sum_probs=104.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH-----hHHHHHHHHHhc----CCCHHHHHHHHHHhHHhcCCCCChHH
Q 006076 360 NSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSP-----ISFVSVLGACSH----AGLVEEGKMLFESMRKEHMIRPSVEH 429 (662)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 429 (662)
..++....=.|+-+.+++++.+-.+.+ +.-.. .+|..++..+.. ....+.+.++++.+.+++ |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 344555555677777777776654422 22111 233334443332 457889999999998764 66555
Q ss_pred HHH-HHHHHhhcCCHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH-HHHH
Q 006076 430 YAC-MVDLLGRANKLEEAAKIIEDLRI------EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV-LLAD 501 (662)
Q Consensus 430 ~~~-li~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~ 501 (662)
|.. -...+...|++++|++.|++.-. +-....+--+...+....++++|...+.++.+.+.-+...|. ..+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 433 34667788999999999997521 112333444566677889999999999999987655455554 4555
Q ss_pred HHHhcCCh-------HHHHHHHHHHHh
Q 006076 502 VYAAADMW-------DEVKRVKRLLEA 521 (662)
Q Consensus 502 ~~~~~g~~-------~~A~~~~~~m~~ 521 (662)
+|...|+. ++|.+++++.+.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 66788888 888888888775
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.56 E-value=9.5 Score=38.75 Aligned_cols=72 Identities=14% Similarity=0.020 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCC---CH----hHHHHHHHHHHH---cCChhHHHHHHHHHhhhhCCCcCCHHHHHHH
Q 006076 227 TLIDMYARFGCVMYAGFVFSQMAVK---NV----VSWSAMIACYAR---NGMAFEALELFREMIMESHDLCPNSVTMVSV 296 (662)
Q Consensus 227 ~li~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~l 296 (662)
.|+-.|-...+++...++.+.++.. ++ ..--....++.+ .|+.++|++++..+ ......+++.||..+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~--l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPV--LESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH--HhccCCCChHHHHHH
Confidence 4455688888999999999988753 11 112233445666 78999999999886 344455677777766
Q ss_pred HHHH
Q 006076 297 LQAC 300 (662)
Q Consensus 297 l~a~ 300 (662)
...|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 6554
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=93.55 E-value=1.6 Score=45.03 Aligned_cols=62 Identities=10% Similarity=-0.082 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006076 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519 (662)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (662)
|+.....+..+....++.+.|...|+++..++|+.+.+|...+....-+|+.++|.+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444445454455555666666666666666666666666666666666666666666553
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.47 E-value=0.15 Score=31.42 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (662)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888876
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.45 E-value=2.4 Score=44.52 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=74.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCh
Q 006076 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372 (662)
Q Consensus 293 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 372 (662)
...++.-+.+.|..+.|.++-..-. .-.+...++|+++.|.++.++.. +...|..|.....++|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 4455555556666666655533211 12344567788888877766554 555788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 006076 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452 (662)
Q Consensus 373 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (662)
+-|.+.|.+..+ |..|+--|.-.|+.+.-.++-+...... -++.....+.-.|+.++..+++.+
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888776433 3445555566677666555555443221 133334444455666666666665
Q ss_pred cC
Q 006076 453 LR 454 (662)
Q Consensus 453 m~ 454 (662)
.+
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.22 E-value=2.3 Score=41.91 Aligned_cols=121 Identities=12% Similarity=0.072 Sum_probs=61.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhc-------CCCCCHHHHH--
Q 006076 397 VLGACSHAGLVEEGKMLFESMRKEHMIRP----SVEHYACMVDLLGRANKLEEAAKIIEDL-------RIEPGPKVWG-- 463 (662)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~-- 463 (662)
+..|+...+.++++++.|+...+-..-.. ...+|..|...|++..++++|.-+..+. +++.=..-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44455555566666666665543211111 2345666666676666666665443332 2111111122
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhc--CCC----CcchHHHHHHHHHhcCChHHHHHHHH
Q 006076 464 ---SLLGSCRIHCNVELAERASKRLFEL--EPT----NAGNYVLLADVYAAADMWDEVKRVKR 517 (662)
Q Consensus 464 ---~ll~~~~~~g~~~~a~~~~~~~~~~--~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 517 (662)
-|.-+++..|....|.+.-++..++ ... .......++++|-..|+.|.|..-++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 2334566666666666666655442 111 22334456677777776666665554
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=93.20 E-value=8.2 Score=39.98 Aligned_cols=159 Identities=9% Similarity=0.029 Sum_probs=104.1
Q ss_pred hHH--HHHHHHHHhcC-----ChHHHHHHHHHHHH-cCCCCCHh-HHHHHHHHHh---------cCCCHHHHHHHHHHhH
Q 006076 357 VSW--NSLISSYGVHG-----YGGKAIQIFKEMIY-HGVSPSPI-SFVSVLGACS---------HAGLVEEGKMLFESMR 418 (662)
Q Consensus 357 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~ 418 (662)
..| ...+.|..... ..+.|+.+|.+... +.+.|+.. .|..+..++. ...+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555544411 34578888888872 23666643 3333322221 1234556777777666
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-
Q 006076 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN- 495 (662)
Q Consensus 419 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~- 495 (662)
+.. +-|......+..++.-.|+++.|..+|++. .+.|| ..+|......+.-.|+.++|.+.+++.++++|.-..+
T Consensus 332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 432 346777777888888888899999999988 45564 4566666666778899999999999999999975433
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHH
Q 006076 496 -YVLLADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 496 -~~~l~~~~~~~g~~~~A~~~~~~ 518 (662)
.-..+++|+.. .+++|.+++-+
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHhh
Confidence 33445567654 46777777653
No 247
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.05 E-value=0.27 Score=30.17 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
..|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 346667777777788888888888887777764
No 248
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=8.1 Score=36.17 Aligned_cols=198 Identities=15% Similarity=0.096 Sum_probs=110.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC--hhHHHHHHHHHHhcC
Q 006076 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD--VVSWNSLISSYGVHG 370 (662)
Q Consensus 293 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~li~~~~~~g 370 (662)
|.....+|....+++++...+..+.+. .+.+...|. ....++.|.-+.++|.+-+ +..|+--...|.++|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 334445566677777777766655532 121221111 1233444555555554322 224555667777777
Q ss_pred ChHHHHHHHHHHHH--cCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc----CCCCChHHHHHHHHHHhhcCCHH
Q 006076 371 YGGKAIQIFKEMIY--HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH----MIRPSVEHYACMVDLLGRANKLE 444 (662)
Q Consensus 371 ~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~ 444 (662)
..+-|-..+++.-+ .++.| ++|++++++..... ....-...|......|.+..+++
T Consensus 106 spdtAAmaleKAak~lenv~P------------------d~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKP------------------DDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCH------------------HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77766666655433 12344 44444444332211 01112345566667788888888
Q ss_pred HHHHHHHhcC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCcchHHHHHHHHHhcCChHHH
Q 006076 445 EAAKIIEDLR-------IEPGP-KVWGSLLGSCRIHCNVELAERASKRLFE----LEPTNAGNYVLLADVYAAADMWDEV 512 (662)
Q Consensus 445 ~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A 512 (662)
||-..|.+-. .-|+. ..+-+.|-.+.-..++..|+..++.-.+ ..|++..+...|+..| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 8776665542 12222 2345555566666788888888887654 3466677777787777 47888887
Q ss_pred HHHHH
Q 006076 513 KRVKR 517 (662)
Q Consensus 513 ~~~~~ 517 (662)
.++..
T Consensus 247 ~kvl~ 251 (308)
T KOG1585|consen 247 KKVLS 251 (308)
T ss_pred HHHHc
Confidence 77654
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.84 E-value=5.7 Score=34.20 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=17.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhc
Q 006076 330 ALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVH 369 (662)
Q Consensus 330 ~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 369 (662)
.+|..+.+.+........++.+.. .+....|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 344444444455555554444432 1233444555555443
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.78 E-value=4.4 Score=34.75 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 006076 475 VELAERASKRLFELEPTN 492 (662)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~ 492 (662)
...|...|+++++.-|++
T Consensus 115 ~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 557777888888888875
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=1.5 Score=42.67 Aligned_cols=159 Identities=10% Similarity=-0.024 Sum_probs=113.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHH----HHHHhhcCCH
Q 006076 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM----VDLLGRANKL 443 (662)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~ 443 (662)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++++... ..|+...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888889888875 5667777877788999999999999999888643 35665555443 3445688999
Q ss_pred HHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCChHHHHHHHH
Q 006076 444 EEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPT----NAGNYVLLADVYAAADMWDEVKRVKR 517 (662)
Q Consensus 444 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 517 (662)
++|++.-++. .+.| |...-.++.......|+..++.++..+-...=.. -.-.|-..+-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998876 4444 5566667777788889999998887665432111 12245556666777899999999998
Q ss_pred HHHhCCCcCCCc
Q 006076 518 LLEARGLQKVPG 529 (662)
Q Consensus 518 ~m~~~~~~~~~~ 529 (662)
.=.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765555555444
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.39 E-value=3.4 Score=43.43 Aligned_cols=158 Identities=11% Similarity=0.101 Sum_probs=98.6
Q ss_pred HHHHHhCCCchHHHHHHh-cCCC--CCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChH
Q 006076 56 IQSLCKQGNLRQALDVLS-IEPN--PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132 (662)
Q Consensus 56 i~~~~~~g~~~~A~~~~~-~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 132 (662)
-....-+|+++++.+... ...- -+..-.+.++.-+-+.|..+.|.++-. |+ ..-.....++|+++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 345566888999766665 1111 124457778888888898888887643 32 22345666899999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHH
Q 006076 133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS 212 (662)
Q Consensus 133 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~ 212 (662)
.|.++-++.. +...|..|.....+.|+++-|.+.|.+... |..++-.+...|+ .+.-.++...
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------~~~L~lLy~~~g~----~~~L~kl~~~ 398 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----------FSGLLLLYSSTGD----REKLSKLAKI 398 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-----HHHHHHHHHH
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------ccccHHHHHHhCC----HHHHHHHHHH
Confidence 9999988776 566999999999999999999999997743 4555556666677 6666666666
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006076 213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248 (662)
Q Consensus 213 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 248 (662)
....| . +|.....+.-.|++++..+++.+.
T Consensus 399 a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERG-D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 66655 1 233333444456666666655443
No 253
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.33 E-value=26 Score=40.55 Aligned_cols=54 Identities=26% Similarity=0.127 Sum_probs=26.5
Q ss_pred HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
+.++-..|++++|..+...+.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 4455555555555555554421 00111122245555666666666666665554
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.22 E-value=6.9 Score=33.68 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=31.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006076 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339 (662)
Q Consensus 295 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 339 (662)
.++..+...+.......+++.+++.+ ..+....|.++..|++..
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD 55 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC
Confidence 45555566667777777777777766 356778888888888753
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.05 E-value=11 Score=35.43 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006076 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279 (662)
Q Consensus 203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (662)
.+.+.-+..++.+. +--+..++--..+|..+|..+.|-..+++.-+ ...+-++++|+++|++-
T Consensus 74 yEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqra 136 (308)
T KOG1585|consen 74 YEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRA 136 (308)
T ss_pred HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHH
Confidence 34444444444332 22234556666777777777766655554311 12344566666666554
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.01 E-value=4.1 Score=39.77 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=107.7
Q ss_pred HhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH--HHHHHH--HHhcCCCHH
Q 006076 336 ARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS--FVSVLG--ACSHAGLVE 408 (662)
Q Consensus 336 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~--a~~~~g~~~ 408 (662)
.-.|+.-+|...++++.+ .|..+|+--=.+|.-.|+.+.-...+++.... ..||... |..-+- ++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346778888878887764 58889999999999999999999999988764 3455533 333333 445789999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHhcCCHHHHHHH
Q 006076 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP-------GPKVWGSLLGSCRIHCNVELAERA 481 (662)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-------~~~~~~~ll~~~~~~g~~~~a~~~ 481 (662)
+|.+.-++..+.+ +.|.-.-.++...+--.|++.|+.+++.+-.-.= ...-|..-+ .+...+.++.|+.+
T Consensus 193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHH
Confidence 9999888776432 3456666778888889999999999988763110 111122211 23445789999999
Q ss_pred HHHHH--hcCCCCcch
Q 006076 482 SKRLF--ELEPTNAGN 495 (662)
Q Consensus 482 ~~~~~--~~~p~~~~~ 495 (662)
|.+-+ +++.+|..+
T Consensus 270 yD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHHhhccchhh
Confidence 98643 566666533
No 257
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.99 E-value=9.5 Score=35.02 Aligned_cols=178 Identities=15% Similarity=0.145 Sum_probs=102.3
Q ss_pred CChHHHHHHHhhCC--CCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHH
Q 006076 339 GKLELGQCVFDHMD--KRD-VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLF 414 (662)
Q Consensus 339 g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 414 (662)
|-..-|+-=|.+.. .|+ +..||-+.--+...|+++.|.+.|+...+ +.|.. .+...-.-++--.|++..|.+=|
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHH
Confidence 44444444444332 343 34678888888888999999999988877 34432 23322223445568888887766
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q 006076 415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII-EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN- 492 (662)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~- 492 (662)
...-....-.|-...|--++. +.-++.+|..-+ ++.. ..|..-|..-|-.+.-. ++. .+.+++++.+...++
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDNT 230 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccchH
Confidence 655443322333334433332 334566666443 3333 44556666555443321 111 123344444332222
Q ss_pred ------cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 493 ------AGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 493 ------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
..+|.-|+.-|...|..++|..+|+.....++
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35788899999999999999999998776443
No 258
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.96 E-value=10 Score=35.09 Aligned_cols=194 Identities=19% Similarity=0.133 Sum_probs=120.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCh-hHHHHHHH-HHHh
Q 006076 294 VSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RDV-VSWNSLIS-SYGV 368 (662)
Q Consensus 294 ~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~-~~~~ 368 (662)
......+...+.+..+...+...... ........+..+...+...++++.+.+.+..... ++. ..+..... .+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 33333344444444444444443331 1223334444455555556666666666665543 211 22223333 6778
Q ss_pred cCChHHHHHHHHHHHHcCCCC----CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCH
Q 006076 369 HGYGGKAIQIFKEMIYHGVSP----SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKL 443 (662)
Q Consensus 369 ~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 443 (662)
.|++++|...|.+... ..| ....+......+...++.+.+...+....+.. +. ....+..+...+...+.+
T Consensus 143 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 143 LGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred cCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHcccH
Confidence 8888888888888855 333 23344444444667888899998888887532 33 367788888888888899
Q ss_pred HHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076 444 EEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 444 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (662)
++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999888877 33444 445555555556667799999999999988886
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.84 E-value=20 Score=38.22 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCCh-----hhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchh
Q 006076 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR-----FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH 223 (662)
Q Consensus 149 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~-----~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 223 (662)
...+++...=.|+-+.+++++.+-.+.+ ++.-.. .+|..++..+.........++.+.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 3344555566788899999988876542 343222 234444444333210233488899999988876 34444
Q ss_pred HHH-HHHHHHHhcCCHHHHHHHHHcCCCC-------CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHH
Q 006076 224 IMT-TLIDMYARFGCVMYAGFVFSQMAVK-------NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295 (662)
Q Consensus 224 ~~~-~li~~y~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ 295 (662)
.|. --..++...|++++|.+.|++.... ....+--+.-++.-.+++++|.+.|..+ .... ..+..+|.-
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L--~~~s-~WSka~Y~Y 344 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL--LKES-KWSKAFYAY 344 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH--Hhcc-ccHHHHHHH
Confidence 443 3445677789999999999975431 2233445556677889999999999999 4432 234555655
Q ss_pred HHHHH-HccCCH-------HHHHHHHHHHH
Q 006076 296 VLQAC-AALAAL-------EQGKMIHGYIL 317 (662)
Q Consensus 296 ll~a~-~~~~~~-------~~a~~~~~~~~ 317 (662)
+..+| ...++. ++|..++..+.
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 55554 455666 77777777664
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.61 E-value=2.5 Score=40.32 Aligned_cols=61 Identities=20% Similarity=0.128 Sum_probs=29.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 432 CMVDLLGRANKLEEAAKIIEDL----RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
-|...+...|++++|..+|..+ |-.| -+...--|.......|+.++|...++++.+..|..
T Consensus 183 WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 3444555555555555444443 1111 12333344444555566666666666666655554
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.53 E-value=1.9 Score=35.88 Aligned_cols=90 Identities=16% Similarity=0.046 Sum_probs=59.0
Q ss_pred HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CC-CH---HHHHHHHHHHHhcC
Q 006076 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EP-GP---KVWGSLLGSCRIHC 473 (662)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p-~~---~~~~~ll~~~~~~g 473 (662)
+.+..|+++.|++.|.....- .+.....||.-..+|.-.|+.++|++=+++. .+ .| .. ..|..-...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 456677888888888777642 2446777888888888888888887777665 11 11 11 22333344577788
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 006076 474 NVELAERASKRLFELEPT 491 (662)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~ 491 (662)
+.+.|..-|+.+-+++..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888877766543
No 262
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.52 E-value=15 Score=36.09 Aligned_cols=18 Identities=11% Similarity=-0.250 Sum_probs=11.0
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 006076 468 SCRIHCNVELAERASKRL 485 (662)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~ 485 (662)
.+.+.+++++|...++-.
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 345566777777666643
No 263
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.45 E-value=4.6 Score=39.88 Aligned_cols=93 Identities=12% Similarity=0.220 Sum_probs=53.5
Q ss_pred hHHHHHHHhhCCC-------CChhHHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhcCCC-
Q 006076 341 LELGQCVFDHMDK-------RDVVSWNSLISSYGVHGY----GGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGL- 406 (662)
Q Consensus 341 ~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~- 406 (662)
...|..+|+.|++ ++-.++.+|+.. ..++ .+.+..+|+.+.+.|+..+. .....+|..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3455566666653 344455555443 2222 35677788888888877654 333444433333222
Q ss_pred -HHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076 407 -VEEGKMLFESMRKEHMIRPSVEHYACMVDL 436 (662)
Q Consensus 407 -~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 436 (662)
+..+.++++.+. +.|+++...+|..+.-+
T Consensus 197 ~v~r~~~l~~~l~-~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 197 KVARVIELYNALK-KNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHH-HcCCccccccccHHHHH
Confidence 346777888885 45788877777655443
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.17 E-value=17 Score=36.12 Aligned_cols=127 Identities=13% Similarity=0.015 Sum_probs=75.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHhHHHHHHHHHhcCCCHHHHHHHHHHhH---HhcCCCCChHHHHH
Q 006076 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSP-----SPISFVSVLGACSHAGLVEEGKMLFESMR---KEHMIRPSVEHYAC 432 (662)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~~ 432 (662)
+|..++.-.+.++++++.|+...+---.. .-..+..|-+-|.+..++++|.-+..... ...++..-..-|.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 35555666667778888777665521111 12467777777777788877766554432 23333222222333
Q ss_pred -----HHHHHhhcCCHHHHHHHHHhc-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076 433 -----MVDLLGRANKLEEAAKIIEDL-------RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFE 487 (662)
Q Consensus 433 -----li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (662)
|.-+|...|++-+|.+.-++. +.+| -......+...|+..|+.|.|..-|+.+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 334566667776666666554 2222 233445677888999999998888887765
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.02 E-value=29 Score=38.54 Aligned_cols=176 Identities=10% Similarity=0.079 Sum_probs=101.5
Q ss_pred ChHHHHHHHHhCCCchHHHHHHh-cCCCCCHhhHHHHH----HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHh
Q 006076 51 NKNELIQSLCKQGNLRQALDVLS-IEPNPTQHTYELLL----LSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY 125 (662)
Q Consensus 51 ~~~~li~~~~~~g~~~~A~~~~~-~~~~p~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 125 (662)
+-.+-|..+.+...++-|+.+-+ ... |..+...+. .-+.+.|++++|..-+-+-+.. ++|. .+|.-|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 34567888888888888888877 322 223333333 3344678888887666544332 2322 245555
Q ss_pred hcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccc
Q 006076 126 SHFDSVDDARHVFDKTRRR---TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL 202 (662)
Q Consensus 126 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~ 202 (662)
....++..-...++.+.+. +...-+.|+.+|.+.++.+.-.++.+.-. . |.. .+-.-..+..|.+.+-
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~--g~~--~fd~e~al~Ilr~sny---- 478 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-K--GEW--FFDVETALEILRKSNY---- 478 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-C--cce--eeeHHHHHHHHHHhCh----
Confidence 5555555555555555443 34456678888888888887766666443 2 221 1224455666666555
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC
Q 006076 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK 251 (662)
Q Consensus 203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 251 (662)
+++|.-+-... +. ...+...+ +-..+++++|.+.+..++-+
T Consensus 479 l~~a~~LA~k~---~~--he~vl~il---le~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 479 LDEAELLATKF---KK--HEWVLDIL---LEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHHHHHh---cc--CHHHHHHH---HHHhcCHHHHHHHHhcCCHH
Confidence 66665443322 21 22333333 34468899999999998754
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.85 E-value=23 Score=37.02 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=45.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC-C-CCC--HHHHHHHHHHHHhc
Q 006076 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR-I-EPG--PKVWGSLLGSCRIH 472 (662)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~ll~~~~~~ 472 (662)
+..++-+.|+.++|.+.+.++.+.............|+..|...+.+.++..++.+.. + -|. ...|++.+--.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 3334445555555555555555433221223344555555555566665555555542 1 122 23344333222222
Q ss_pred CC---------------HHHHHHHHHHHHhcCCCC
Q 006076 473 CN---------------VELAERASKRLFELEPTN 492 (662)
Q Consensus 473 g~---------------~~~a~~~~~~~~~~~p~~ 492 (662)
++ ...|.++..++.+.+|.-
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 22 123556777877777653
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.77 E-value=2 Score=40.82 Aligned_cols=99 Identities=10% Similarity=0.024 Sum_probs=69.6
Q ss_pred HHHHHHHcCC--CCCHhHHHHHHHHHHHc-----CChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccC--------
Q 006076 240 YAGFVFSQMA--VKNVVSWSAMIACYARN-----GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA-------- 304 (662)
Q Consensus 240 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~-------- 304 (662)
..++.|...+ ++|-.+|-+++..+... +..+-....++.| +.-|+.-|..+|..+|+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m--~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYM--KEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH--HHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 3456677776 67888888888877654 4456566677888 88899999999999988764432
Q ss_pred --------CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006076 305 --------ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340 (662)
Q Consensus 305 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 340 (662)
+-+-+..++++|...|+-||-.+-..|++++++.+-
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223456677777777777777777777777766554
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.71 E-value=21 Score=36.33 Aligned_cols=148 Identities=14% Similarity=0.029 Sum_probs=77.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC--hH
Q 006076 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP---SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS--VE 428 (662)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 428 (662)
....+|..+...+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+.. +..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~-~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR-LSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhccccc
Confidence 445578888888888888888888888887743221 22333334455566788888888887776411 1111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HHhcCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 006076 429 HYACMVDLLGRANKLEEAAKI-IEDLRIEPGPKVWGSLLGSCRI------HCNVELAERASKRLFELEPTNAGNYVLLAD 501 (662)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (662)
....+...+.. ..+..... ........-...+..+..-+.. .++.+++...|+.+.++.|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 0000000001122222222223 377888899999999999887777776666
Q ss_pred HHH
Q 006076 502 VYA 504 (662)
Q Consensus 502 ~~~ 504 (662)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 654
No 269
>PRK15331 chaperone protein SicA; Provisional
Probab=90.53 E-value=3.6 Score=36.14 Aligned_cols=85 Identities=11% Similarity=-0.035 Sum_probs=39.0
Q ss_pred HHHHcCChhHHHHHHHHHhhhhCCCcCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006076 262 CYARNGMAFEALELFREMIMESHDLCPNSVTM-VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340 (662)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 340 (662)
-+-+.|++++|..+|+-+ -.. .|...-| ..+..++-..+++++|...+......+. .|+...--...+|...|+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L--~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFL--CIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHCCCHHHHHHHHHHH--HHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 344556666666666555 221 1222222 2233333344555555555555544332 222223334455555555
Q ss_pred hHHHHHHHhhC
Q 006076 341 LELGQCVFDHM 351 (662)
Q Consensus 341 ~~~A~~~~~~m 351 (662)
.+.|...|...
T Consensus 121 ~~~A~~~f~~a 131 (165)
T PRK15331 121 AAKARQCFELV 131 (165)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 270
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.03 E-value=36 Score=37.92 Aligned_cols=79 Identities=13% Similarity=-0.050 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc
Q 006076 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA 302 (662)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~ 302 (662)
..-..-+..+.+.++++...+ |..-+..+...-.....+....|+.++|......+ -..| ...+.....++..+.+
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l--W~~g-~~~p~~cd~l~~~~~~ 175 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKEL--WLTG-KSLPNACDKLFSVWQQ 175 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--hccC-CCCChHHHHHHHHHHH
Confidence 333444455566777777777 33222345555566677777788877777666666 4444 2234455566666554
Q ss_pred cCC
Q 006076 303 LAA 305 (662)
Q Consensus 303 ~~~ 305 (662)
.|.
T Consensus 176 ~g~ 178 (644)
T PRK11619 176 SGK 178 (644)
T ss_pred cCC
Confidence 443
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.94 E-value=0.53 Score=29.51 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 495 NYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999843
No 272
>PRK09687 putative lyase; Provisional
Probab=89.87 E-value=21 Score=35.04 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=37.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCCh----hHHHHHHHHHhhhhCCCcCCHHHHH
Q 006076 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA----FEALELFREMIMESHDLCPNSVTMV 294 (662)
Q Consensus 219 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~p~~~t~~ 294 (662)
.+|..+....+..+.+.|..+-...+..-+..+|...=...+.++.+.|+. .+++..+..+ ... .|+...-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l--~~~--D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL--ALE--DKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH--Hhc--CCCHHHHH
Confidence 444555555555555555433333333323344554444555555555553 3455555544 221 24444444
Q ss_pred HHHHHHHcc
Q 006076 295 SVLQACAAL 303 (662)
Q Consensus 295 ~ll~a~~~~ 303 (662)
..+.++...
T Consensus 110 ~A~~aLG~~ 118 (280)
T PRK09687 110 SAINATGHR 118 (280)
T ss_pred HHHHHHhcc
Confidence 444444433
No 273
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.77 E-value=13 Score=41.08 Aligned_cols=177 Identities=12% Similarity=0.005 Sum_probs=91.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 006076 293 MVSVLQACAALAALEQGKMIHGYILRRGLDSI--LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370 (662)
Q Consensus 293 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 370 (662)
.-.-|....+...++.|..+- ...+..++ ........+-+.+.|++++|...+-+-..--.. ..+|.-|....
T Consensus 337 le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq 411 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHH
Confidence 334444455555555554432 22333333 122233344445677777777666543321111 12455555556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 006076 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450 (662)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 450 (662)
+..+-..+++.+.+.|+.-.. --+.||.+|.+.++.++-.++.+... +..+.-| ....+..+.+.+-+++|..+-
T Consensus 412 ~IknLt~YLe~L~~~gla~~d-httlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLANSD-HTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHcccccch-hHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHH
Confidence 666666677777777754333 23457777777777777666655442 1111112 234556666677777777666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006076 451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484 (662)
Q Consensus 451 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 484 (662)
.+... .......++ -..+++++|.+.++.
T Consensus 487 ~k~~~--he~vl~ill---e~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 487 TKFKK--HEWVLDILL---EDLHNYEEALRYISS 515 (933)
T ss_pred HHhcc--CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence 65542 233333333 235667777666543
No 274
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.27 E-value=22 Score=34.47 Aligned_cols=153 Identities=15% Similarity=0.115 Sum_probs=91.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC
Q 006076 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLGRANK 442 (662)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 442 (662)
......|++.+|..+|....... +-+...-..+..++...|+.+.|..++..+..+. ..+ ......-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~--~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA--QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc--hhhHHHHHHHHHHHHHHHhc
Confidence 34556778888888887777642 2223455566777788888888888887764321 111 1112234555666655
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChH-HHHHHHHH
Q 006076 443 LEEAAKIIEDLRIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELE--PTNAGNYVLLADVYAAADMWD-EVKRVKRL 518 (662)
Q Consensus 443 ~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~ 518 (662)
..+..++-.+..-.| |...-..+...+...|+.+.|...+-.++..+ -.|...-..|+.++.-.|.-+ .+.+.+++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 555555555553355 55555566677777888888877766666543 345566667777777666433 33344444
Q ss_pred H
Q 006076 519 L 519 (662)
Q Consensus 519 m 519 (662)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.09 E-value=2.6 Score=40.75 Aligned_cols=76 Identities=17% Similarity=0.302 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHhHHHH
Q 006076 325 LPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIY-----HGVSPSPISFVS 396 (662)
Q Consensus 325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 396 (662)
..++..++..+..+|+.+.+...++++.. -|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34677788889999999999998888764 3667899999999999999999999988766 477777666555
Q ss_pred HHHH
Q 006076 397 VLGA 400 (662)
Q Consensus 397 ll~a 400 (662)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 276
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.89 E-value=22 Score=33.83 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=46.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 465 LLGSCRIHCNVELAERASKRLFELEPTNA---GNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
+..-|.+.|.+..|..-++.+++.-|+.. ..+..|..+|.+.|..++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 44568889999999999999998766543 35667888999999999999988777653
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.87 E-value=4.7 Score=35.54 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHcCCCCCHhHHHHH-----HHHHHHcCChhHHHHHHHHH
Q 006076 235 FGCVMYAGFVFSQMAVKNVVSWSAM-----IACYARNGMAFEALELFREM 279 (662)
Q Consensus 235 ~g~~~~A~~~f~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m 279 (662)
.+..++|..-|..+.+.+--.|-.| .....+.|+...|...|.++
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdei 120 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEI 120 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 3445555555555544332222222 22344556666666666655
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.81 E-value=9.2 Score=39.80 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 463 GSLLGSCRIHCNVELAERASKRLFELEPT--NAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 463 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
..|...+.+.|+.++|.+.++.+++..|. +......|++.+...+++.|+..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555566777777777777777765553 344566677777777777777777776543
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.78 E-value=9.7 Score=34.40 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC------hHHH
Q 006076 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS------VEHY 430 (662)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~ 430 (662)
+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...+++..+.....+......-..| ..+|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 344444455555555555555555443333332 22334444444455555555444444221100001 1222
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhc
Q 006076 431 ACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~m 453 (662)
..|.. ...+++.+|-+.|-+.
T Consensus 119 ~gL~~--l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLAN--LAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHhchHHHHHHHHHcc
Confidence 22222 2356777777776655
No 280
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.53 E-value=1.9 Score=38.87 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=66.6
Q ss_pred HHHhhcCCHHHHHHHHHhc-CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 006076 435 DLLGRANKLEEAAKIIEDL-RIEPG------PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507 (662)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (662)
+-+.+.|++++|..-|.+. ..-|. .+.|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3456677777777776655 11221 2344444566778889999999999999999987777777888999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 006076 508 MWDEVKRVKRLLEARG 523 (662)
Q Consensus 508 ~~~~A~~~~~~m~~~~ 523 (662)
++++|+.=++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999888744
No 281
>PRK09687 putative lyase; Provisional
Probab=88.38 E-value=27 Score=34.31 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=41.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401 (662)
Q Consensus 322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (662)
.++..+-...+.++++.|+.+-...+.+.+..+++ .-..+.++...|.. +|+..+.++.+. .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 33555555566666666664433334444444432 23456666777764 577777776653 34655555555554
Q ss_pred h
Q 006076 402 S 402 (662)
Q Consensus 402 ~ 402 (662)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.36 E-value=0.84 Score=27.91 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076 461 VWGSLLGSCRIHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (662)
+|..+...+...|+.++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666777777777777777777777663
No 283
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=88.30 E-value=33 Score=35.26 Aligned_cols=413 Identities=13% Similarity=0.051 Sum_probs=221.7
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCCccHHHHHHHHHhhCCC
Q 006076 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI---YVWNALFRALTLAGRGEEVLELYRRMNGTGT 177 (662)
Q Consensus 101 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 177 (662)
++-+.+.+. +.|..+|-.||.-|...|.+++.++++++|..|-+ .+|..-|++=....++.....+|.+-+..
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-- 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-- 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh--
Confidence 444444443 56788999999999999999999999999998754 58999999888889999999999988776
Q ss_pred CCCCChhhHHHHHHHHHhCCC-Cccc-hHHHHHHHHHHHH-hCCCCc-hhHHHHHHHHHH---------hcCCHHHHHHH
Q 006076 178 GIRSDRFTYTYVLKACVASSC-GFSL-LKHGKEIHASVLR-HGYNGI-VHIMTTLIDMYA---------RFGCVMYAGFV 244 (662)
Q Consensus 178 g~~p~~~t~~~ll~~~~~~~~-~~~~-~~~a~~~~~~~~~-~g~~~~-~~~~~~li~~y~---------~~g~~~~A~~~ 244 (662)
.+. ...|..-|.-..+... ..|+ --...+.++..+. .+++|- ...|+..+...- ...++|..++.
T Consensus 106 ~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 SLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 444 3444444544433332 1110 0111233333333 345543 345565554432 22345566667
Q ss_pred HHcCCC-C--CH-hHHH------HHHHHH-HH--cCC----hhHHHHHHHHHhhhhCCCcC----CHHHHHHHHH-----
Q 006076 245 FSQMAV-K--NV-VSWS------AMIACY-AR--NGM----AFEALELFREMIMESHDLCP----NSVTMVSVLQ----- 298 (662)
Q Consensus 245 f~~~~~-~--~~-~~~~------~li~~~-~~--~g~----~~~A~~~~~~m~~~~~~~~p----~~~t~~~ll~----- 298 (662)
+.++.. | +. ..|+ .=+... ++ .|. +..|...+++......|++. +..|++-+-+
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 777653 2 11 1122 111111 11 121 34566666666433344332 2223332111
Q ss_pred ------HHHcc-----CC-H-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChh------
Q 006076 299 ------ACAAL-----AA-L-EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RDVV------ 357 (662)
Q Consensus 299 ------a~~~~-----~~-~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~------ 357 (662)
-=... ++ . ...--+|++++.. +.-...+|----.-+...++-+.|.+....-.+ |...
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ 342 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEY 342 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHH
Confidence 10000 00 0 0111122222221 011122222222223345666677766554332 2211
Q ss_pred ------------HHHHHHHHHHh---cCChHHHHHH------HHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 006076 358 ------------SWNSLISSYGV---HGYGGKAIQI------FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES 416 (662)
Q Consensus 358 ------------~~~~li~~~~~---~g~~~~A~~~------~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 416 (662)
+|..++..+.+ .+..+.+-.. ..+..-....--...|...+++-.+..-++.|+.+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 12222222211 1111111100 11111000111134566677777788889999999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC
Q 006076 417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKV-WGSLLGSCRIHCNVELAERASKRLFELEP--TN 492 (662)
Q Consensus 417 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~ 492 (662)
..+..-+.+++..+++++.-++ .|+..-|..+|+-- ..-||... -+-.+.-+...++-+.|..+|+..++.-. .-
T Consensus 423 ~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 423 LRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL 501 (660)
T ss_pred HhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence 9754336788999999998776 57778889998753 33455444 34566666778888999999996654211 12
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 493 AGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
...|..+++-=..-|++..+..+-+.|.+
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 35777777777788888777776666654
No 284
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.04 E-value=48 Score=36.85 Aligned_cols=21 Identities=43% Similarity=0.563 Sum_probs=13.5
Q ss_pred HhhcCCHHHHHHHHHhcCCCC
Q 006076 437 LGRANKLEEAAKIIEDLRIEP 457 (662)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~~p 457 (662)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 356778888888888887666
No 285
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.48 E-value=2.4 Score=36.34 Aligned_cols=55 Identities=18% Similarity=0.032 Sum_probs=45.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
...++.++++.++..+.-+.|+.+..-..-+.++...|+|+||.++++.+.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3477888888888888888888888888888888888999999998888876553
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.30 E-value=1 Score=28.15 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076 461 VWGSLLGSCRIHCNVELAERASKRLFEL 488 (662)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (662)
+|..|...|...|++++|+.++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667778888888888888888885543
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.27 E-value=2.8 Score=36.67 Aligned_cols=54 Identities=22% Similarity=0.145 Sum_probs=37.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
...++.+.++.++.-+.-+.|..+..-..-+..+...|+|.+|.++++.+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 455667777777777777777766666666777777777777777777765543
No 288
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.94 E-value=2.1 Score=28.22 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIY 384 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (662)
+|..+...|.+.|++++|.++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555556666666666666666655
No 289
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=86.75 E-value=18 Score=30.48 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHH
Q 006076 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419 (662)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 419 (662)
..-+..+..+|+-++-.+++.++.+. -.|++.....+..||.+.|+..++.+++....+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34456667777777777777777653 366777777777888888888888888877764
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.54 E-value=1.5 Score=26.75 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIY 384 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (662)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777666
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.17 E-value=22 Score=35.21 Aligned_cols=129 Identities=9% Similarity=0.076 Sum_probs=77.3
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cC----CHHHHHHHHHcCCCC-------CHhHHHHHHHHHHHc
Q 006076 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR--FG----CVMYAGFVFSQMAVK-------NVVSWSAMIACYARN 266 (662)
Q Consensus 200 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g----~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~ 266 (662)
...++....+++.+.+.|+..+.+++-+-.-+... .. ....|..+|+.|.+. +-.++..|+.. ..
T Consensus 75 ~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~ 152 (297)
T PF13170_consen 75 EEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TS 152 (297)
T ss_pred HHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cc
Confidence 34477888899999999998888777654433333 12 245678888888642 44555566544 22
Q ss_pred CC----hhHHHHHHHHHhhhhCCCcCC-H-HHHHHHHHHHHccCC--HHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006076 267 GM----AFEALELFREMIMESHDLCPN-S-VTMVSVLQACAALAA--LEQGKMIHGYILRRGLDSILPVVSALV 332 (662)
Q Consensus 267 g~----~~~A~~~~~~m~~~~~~~~p~-~-~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li 332 (662)
++ .+.+...|+.+ ...|+..+ . ...+.+|..+..... ...+..+++.+.+.|+++....|..+.
T Consensus 153 ~~~e~l~~~~E~~Y~~L--~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 153 EDVEELAERMEQCYQKL--ADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred ccHHHHHHHHHHHHHHH--HHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 23 34566677777 56666553 2 233344443332222 346677777777778777666655443
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.04 E-value=24 Score=31.33 Aligned_cols=134 Identities=15% Similarity=0.182 Sum_probs=79.4
Q ss_pred HHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhc-CCHHHHHH
Q 006076 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV-HIMTTLIDMYARF-GCVMYAGF 243 (662)
Q Consensus 166 ~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~-g~~~~A~~ 243 (662)
++.++.+.+. +++|+...+..+++.+.+.+. ...- ..+++.++-+|. .+..-|++.-.+. .-..-|.+
T Consensus 14 lEYirSl~~~--~i~~~~~L~~lli~lLi~~~~----~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lD 83 (167)
T PF07035_consen 14 LEYIRSLNQH--NIPVQHELYELLIDLLIRNGQ----FSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLD 83 (167)
T ss_pred HHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCC----HHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHH
Confidence 3555666666 788888889999998888776 4433 334455544443 3333333332211 01233444
Q ss_pred HHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 006076 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR 319 (662)
Q Consensus 244 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 319 (662)
.+.++. ..+..++..+...|++-+|+++.+.. .. .+......++.+..+.++...-..++....+.
T Consensus 84 MLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~--~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 84 MLKRLG----TAYEEIIEVLLSKGQVLEALRYARQY--HK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHc--CC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444443 34566778888999999999988764 21 12223345667766777666666666655543
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.03 E-value=23 Score=31.08 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=57.6
Q ss_pred HHHhcCCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHH
Q 006076 399 GACSHAGLVEEGKMLFESMRKEHMIRPSV-EHYACMVDLLGRANKLEEAAKIIEDLR-IEPGPKVWGSLLGSCRIHCNVE 476 (662)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~ 476 (662)
..-.+.++.+++..++..+.- +.|.. ..-..-...+.+.|++.+|..+|+++. -.|....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 334466788888888887753 45543 333334455678899999999999883 2345555567777776655544
Q ss_pred HHHHHHHHHHhcCCC
Q 006076 477 LAERASKRLFELEPT 491 (662)
Q Consensus 477 ~a~~~~~~~~~~~p~ 491 (662)
.=....+++++..++
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 455556666666654
No 294
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.33 E-value=4.3 Score=39.31 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
++..++..+...|+.+.+...++++++.+|-+-..|..|..+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444556666666777777777777777777777777777777777777777777776665
No 295
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.14 E-value=41 Score=34.12 Aligned_cols=68 Identities=25% Similarity=0.225 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEP----TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
....+|..+...+++.|+++.|...+.++....+ ..+.....-+......|+-++|...++......+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999988652 2456777778999999999999999988877333
No 296
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.49 E-value=57 Score=34.27 Aligned_cols=159 Identities=11% Similarity=0.092 Sum_probs=109.2
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006076 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331 (662)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 331 (662)
|-...-+++..+.++-...-...+..+| ..-| -+...|..++..|... .-+.-..+++++++..+. |++...-|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~--l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRV--LEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHH--HHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3344567788888888888888888888 4444 4677788888888777 556777888888887654 56666677
Q ss_pred HHHHHhcCChHHHHHHHhhCCCC------Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHhHHHHHHHHH
Q 006076 332 VTMYARCGKLELGQCVFDHMDKR------DV---VSWNSLISSYGVHGYGGKAIQIFKEMIY-HGVSPSPISFVSVLGAC 401 (662)
Q Consensus 332 i~~y~~~g~~~~A~~~~~~m~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~ 401 (662)
++-|-+ ++.+.+...|..+..+ +. ..|.-++..- ..+.+..+.+..+.+. .|..--.+.+--+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 777766 8888888888766421 11 1566665421 3456666666666654 34444456666666778
Q ss_pred hcCCCHHHHHHHHHHhHH
Q 006076 402 SHAGLVEEGKMLFESMRK 419 (662)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~ 419 (662)
+...++++|++++..+.+
T Consensus 216 s~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 216 SENENWTEAIRILKHILE 233 (711)
T ss_pred ccccCHHHHHHHHHHHhh
Confidence 888899999999887664
No 297
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.36 E-value=39 Score=32.23 Aligned_cols=236 Identities=14% Similarity=0.160 Sum_probs=136.0
Q ss_pred CCHHHHHHHHHcCCC----C---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhh-hCCC--cCCHHHHHHHHHHHHccCC
Q 006076 236 GCVMYAGFVFSQMAV----K---NVVSWSAMIACYARNGMAFEALELFREMIME-SHDL--CPNSVTMVSVLQACAALAA 305 (662)
Q Consensus 236 g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--~p~~~t~~~ll~a~~~~~~ 305 (662)
..+++|..-|.++.+ + .--+.-.||..+.+.|++++.++.|.+|+.- ...+ .-+..+.++++.--+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666655431 1 2233445777788888888888877777410 0011 1245567777777666666
Q ss_pred HHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC------------C---ChhHHHHHHHH
Q 006076 306 LEQGKMIHGYILRR-----GLDSILPVVSALVTMYARCGKLELGQCVFDHMDK------------R---DVVSWNSLISS 365 (662)
Q Consensus 306 ~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------~---~~~~~~~li~~ 365 (662)
.+.-..+++.-.+. +-..-..+-+.|...|...|.+..-.+++.++.. + =...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66666665543321 1122233445677888888888888888877741 1 12367777888
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHh-----cCCCHHHHHHHHHHhHHhcCC--CCC---hHHHHHHH
Q 006076 366 YGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACS-----HAGLVEEGKMLFESMRKEHMI--RPS---VEHYACMV 434 (662)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~~~---~~~~~~li 434 (662)
|..+.+-.+-..+|++...-. .-|.+ ....+++-|. +.|.+++|..-|-+.-+.+.- .|. ---|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888777777887765522 23433 3445566554 457787776444333333321 122 22366677
Q ss_pred HHHhhcC----CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006076 435 DLLGRAN----KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477 (662)
Q Consensus 435 ~~~~~~g----~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 477 (662)
+++.+.| +-+||. -....|.....+.|+.+|..+ +..+
T Consensus 280 NMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N-dI~e 321 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN-DIIE 321 (440)
T ss_pred HHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc-cHHH
Confidence 7777776 222221 011345666778899998765 4444
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.63 E-value=15 Score=33.12 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCCCC------HhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006076 224 IMTTLIDMYARFGCVMYAGFVFSQMAVKN------VVSWSAMIACYARNGMAFEALELFREM 279 (662)
Q Consensus 224 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (662)
.+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44555566666666666666666554331 123444455555555555555555444
No 299
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.41 E-value=46 Score=32.30 Aligned_cols=57 Identities=11% Similarity=-0.046 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.-..|...|.+.+|.++.++++.++|-+...+-.|...|+..|+--+|.+-++.+.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 346789999999999999999999999999999999999999998888888887754
No 300
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.81 E-value=2.7 Score=41.08 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=80.1
Q ss_pred HHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCC
Q 006076 398 LGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDLR-I-EPGPKVWGSLLGSCRIHCN 474 (662)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~g~ 474 (662)
.+-|.+.|.+++|+..+..... +.| ++.++..-..+|.+..++..|..=....- + +.-...|.--..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4568889999999999987764 455 88888888999999999888776555431 1 1112345445555556688
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 006076 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517 (662)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 517 (662)
.++|.+-++..++++|.+. -|-..|.+.....|+.-+.+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIATK 219 (536)
T ss_pred HHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHhh
Confidence 8999999999999999853 34555666666666655544
No 301
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.49 E-value=1.9 Score=24.64 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=18.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 006076 494 GNYVLLADVYAAADMWDEVKRVKR 517 (662)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~ 517 (662)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888888765
No 302
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.24 E-value=23 Score=28.11 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q 006076 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282 (662)
Q Consensus 203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 282 (662)
-++|..|-+.+...+-. ...+.-.-+..+...|++++|..+.+.+..||+..|-+|-.. +.|..+++..-+.+| .
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rl--a 95 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRL--A 95 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHH--H
Confidence 56666666666655422 333333444567788999999999999999999999887654 667777777777777 5
Q ss_pred hCCCcCCHHHHH
Q 006076 283 SHDLCPNSVTMV 294 (662)
Q Consensus 283 ~~~~~p~~~t~~ 294 (662)
..| .|...+|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 555 45544443
No 303
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.12 E-value=23 Score=28.10 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=46.6
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHH
Q 006076 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396 (662)
Q Consensus 333 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 396 (662)
..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 34667899999999999999999999988765 35677777777777787776 555555544
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.52 E-value=3.3 Score=25.03 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIY 384 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (662)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666667777777777766665
No 305
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.46 E-value=1 Score=39.04 Aligned_cols=84 Identities=18% Similarity=0.322 Sum_probs=55.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHH
Q 006076 86 LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165 (662)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 165 (662)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3555666667777777777777666566777888888888888777888887774333 3334566666666666666
Q ss_pred HHHHHHH
Q 006076 166 LELYRRM 172 (662)
Q Consensus 166 ~~l~~~m 172 (662)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666655
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.43 E-value=12 Score=29.77 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435 (662)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 435 (662)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556666666777889999999999999999999999999999976544 33336766654
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.26 E-value=13 Score=29.36 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435 (662)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 435 (662)
.-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.| .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 336666777777778899999999999999999999999999998864432 24456666654
No 308
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=80.54 E-value=3 Score=25.67 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=15.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHH
Q 006076 219 NGIVHIMTTLIDMYARFGCVMYAG 242 (662)
Q Consensus 219 ~~~~~~~~~li~~y~~~g~~~~A~ 242 (662)
+.+..+|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445666666666666666666664
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.60 E-value=3.7 Score=26.26 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=22.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 494 GNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.++..|+.+|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677889999999999999999987764
No 310
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.21 E-value=56 Score=30.64 Aligned_cols=61 Identities=18% Similarity=0.314 Sum_probs=38.2
Q ss_pred HHHHhhcCCHHHHHHHHHhc---CCCCCHHHHHH---HHH--HHH-hcCCHHHHHHHHHHHHhcCCCCcc
Q 006076 434 VDLLGRANKLEEAAKIIEDL---RIEPGPKVWGS---LLG--SCR-IHCNVELAERASKRLFELEPTNAG 494 (662)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~--~~~-~~g~~~~a~~~~~~~~~~~p~~~~ 494 (662)
.+.-+..+++.+|+++|++. .+..+..-|.. ++. .|. ...+.-.+...+++..+++|.-..
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 34445678889999998877 23333333432 222 122 236777788889999999997433
No 311
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.30 E-value=20 Score=34.91 Aligned_cols=97 Identities=22% Similarity=0.330 Sum_probs=51.8
Q ss_pred CCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCC---------CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCC
Q 006076 110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR---------TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180 (662)
Q Consensus 110 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~ 180 (662)
|......+...++..-....+++++...+-++... ...+|-.++. .-++++++.++..=.+- |+-
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqY--GiF 132 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQY--GIF 132 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchh--ccc
Confidence 33334444455555555555666666655444321 1122222222 23455666666665555 666
Q ss_pred CChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHh
Q 006076 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH 216 (662)
Q Consensus 181 p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~ 216 (662)
||.+|++.++..+.+.+. +..+.++.-.++..
T Consensus 133 ~dqf~~c~l~D~flk~~n----~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKEN----YKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhccc----HHHHHHHHHHHHHH
Confidence 777777777776666666 66666665555544
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.56 E-value=1.3e+02 Score=33.48 Aligned_cols=170 Identities=9% Similarity=0.114 Sum_probs=102.4
Q ss_pred HHHHHHhCCCchHHHHHHh--cCCCC---CHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCC
Q 006076 55 LIQSLCKQGNLRQALDVLS--IEPNP---TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129 (662)
Q Consensus 55 li~~~~~~g~~~~A~~~~~--~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 129 (662)
-|..+.+.+.+++|+.+-+ .+..| -.......+..+...|++++|....-.|.. .+..-|.--+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccc
Confidence 5777889999999999998 44444 334456667777788888888887777753 35556666666666666
Q ss_pred ChHHHHHHHhcCCC-CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHH
Q 006076 130 SVDDARHVFDKTRR-RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208 (662)
Q Consensus 130 ~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~ 208 (662)
.......++=.-+. -+...|..++..+.. .+ ..-|.+.+.. .+++.+.-.+++++.
T Consensus 438 ~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~---Wp~~Lys~l~iisa~--------------- 494 (846)
T KOG2066|consen 438 QLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKE---WPGHLYSVLTIISAT--------------- 494 (846)
T ss_pred ccchhhccCCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHh---CChhhhhhhHHHhhc---------------
Confidence 65544333322222 255678888887776 22 2334444433 233333333333221
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHh
Q 006076 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV 254 (662)
Q Consensus 209 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~ 254 (662)
..+..+.. + +..+...|+..|...+++.+|..++-...++++.
T Consensus 495 -~~q~~q~S-e-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 495 -EPQIKQNS-E-STALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred -chHHHhhc-c-chhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 11111111 1 1223334899999999999999999888776543
No 313
>PRK12798 chemotaxis protein; Reviewed
Probab=76.51 E-value=97 Score=31.91 Aligned_cols=181 Identities=15% Similarity=0.172 Sum_probs=117.7
Q ss_pred cCChHHHHHHHhhCCC----CChhHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhcCCCHH
Q 006076 338 CGKLELGQCVFDHMDK----RDVVSWNSLISSYGV-HGYGGKAIQIFKEMIYHGVSPSP----ISFVSVLGACSHAGLVE 408 (662)
Q Consensus 338 ~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 408 (662)
.|+.++|.+.|..+.. +.+..|-+|+.+-.. ..+..+|+++|++..- ..|-. ....--+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6899999999998873 456677778776544 5678999999998776 45543 23444455667889999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHH-HHHHHHhh---cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006076 409 EGKMLFESMRKEHMIRPSVEHYA-CMVDLLGR---ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR 484 (662)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 484 (662)
++..+-.....++.-.|-...|. .++..+.+ .-..+.-..++..|.-.--...|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98877766666654444333322 22333333 334555556666764223456788888888999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHH-----hcCChHHHHHHHHHHHh
Q 006076 485 LFELEPTNAGNYVLLADVYA-----AADMWDEVKRVKRLLEA 521 (662)
Q Consensus 485 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~~ 521 (662)
+..+... ...-...+..|. -..+.++|.+.++.+..
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 9987633 233333444443 23456666666655443
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.46 E-value=6 Score=25.22 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIY 384 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (662)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666665543
No 315
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.41 E-value=17 Score=29.02 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=33.0
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500 (662)
Q Consensus 452 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (662)
.+.+-|++.+..+.+.+|++.+++..|.++++-+...-.+....|-.++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3356789999999999999999999999999988754433333555443
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.25 E-value=5.8 Score=24.00 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 494 GNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688899999999999999999998764
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.77 E-value=17 Score=28.68 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=34.7
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499 (662)
Q Consensus 452 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (662)
.+.+-|++.+..+-+.||++.+|+..|.++++-+...-.++...|-.+
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 335678888999999999999999999999987764333233444443
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.63 E-value=1.2 Score=38.56 Aligned_cols=82 Identities=10% Similarity=0.114 Sum_probs=46.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 006076 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376 (662)
Q Consensus 297 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 376 (662)
+..+.+.+.++....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence 444555566666666777777666556677777788888777766666666663322 22233444455555555555
Q ss_pred HHHHH
Q 006076 377 QIFKE 381 (662)
Q Consensus 377 ~~~~~ 381 (662)
-++.+
T Consensus 91 ~Ly~~ 95 (143)
T PF00637_consen 91 YLYSK 95 (143)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 54443
No 319
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.54 E-value=15 Score=36.06 Aligned_cols=95 Identities=19% Similarity=0.134 Sum_probs=61.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 006076 362 LISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440 (662)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 440 (662)
-..-|.++|.+++|+..|..-.. +.| |.+++..-..||.+...+..|..=......-. ..-+..|+.-..+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHH
Confidence 35679999999999999998777 567 88999999999999988887776655554211 01122233333333334
Q ss_pred CCHHHHHHHHHhc-CCCCCHH
Q 006076 441 NKLEEAAKIIEDL-RIEPGPK 460 (662)
Q Consensus 441 g~~~~A~~~~~~m-~~~p~~~ 460 (662)
|.+.||.+=++.. .++|+..
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccH
Confidence 5555555554443 4667643
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.13 E-value=18 Score=33.00 Aligned_cols=74 Identities=19% Similarity=0.165 Sum_probs=46.1
Q ss_pred hcCCHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCChHHH
Q 006076 439 RANKLEEAAKIIEDLRIEP--GPKVWGSLLGSCRIHCNVELAERASKRLFELEPT----NAGNYVLLADVYAAADMWDEV 512 (662)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A 512 (662)
+.|+ ++|.+.|-.+.-.| +....-.-+..|-...|.++++.++.+++++.+. |+..+..|+.+|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344 45666666652222 2233333444455566788888888888875422 577888888888888888877
Q ss_pred H
Q 006076 513 K 513 (662)
Q Consensus 513 ~ 513 (662)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 321
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.80 E-value=6.2 Score=22.65 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076 463 GSLLGSCRIHCNVELAERASKRLFELEP 490 (662)
Q Consensus 463 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (662)
..+...+...++.+.|...+++.++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444444445555555544444443
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.75 E-value=5.6 Score=23.73 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=12.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076 467 GSCRIHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (662)
.++...|+.++|...++++++..|+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3344445555555555555554443
No 323
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.53 E-value=34 Score=33.46 Aligned_cols=97 Identities=15% Similarity=0.230 Sum_probs=69.0
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-------CC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006076 320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDK-------RD--VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390 (662)
Q Consensus 320 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 390 (662)
|......+...++..-....++++++..+-.+.. |+ .++|--++. .-+.++++.++..=..-|+=||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4444555556666666666778888877766653 22 233333333 3356788888888888899999
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHhHHh
Q 006076 391 PISFVSVLGACSHAGLVEEGKMLFESMRKE 420 (662)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 420 (662)
..|+..++..+.+.+++.+|.++...|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988887777643
No 324
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.47 E-value=22 Score=24.60 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 496 YVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 496 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
...++-++.+.|++++|.+..+.+.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45677789999999999999998876
No 325
>PRK10941 hypothetical protein; Provisional
Probab=73.62 E-value=18 Score=35.17 Aligned_cols=60 Identities=20% Similarity=0.141 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.+.+-.+|.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 456667888999999999999999999999988888888899999999999887776654
No 326
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.53 E-value=55 Score=33.97 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=24.1
Q ss_pred hcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
.+.|+++.+.+.+....+. +.....+..+++....+.|++++|..+-..|
T Consensus 334 ~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~ 383 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMM 383 (831)
T ss_pred HHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 4455555555555444221 2333444455555555555555555554444
No 327
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.20 E-value=1.3e+02 Score=31.66 Aligned_cols=146 Identities=15% Similarity=0.066 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCCCH----------hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH-------HHHHHHHHH-
Q 006076 238 VMYAGFVFSQMAVKNV----------VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS-------VTMVSVLQA- 299 (662)
Q Consensus 238 ~~~A~~~f~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-------~t~~~ll~a- 299 (662)
-|+|....++.++.|. .....++.+-.-.|++.+|++-..+|.. -..-.|.. .....++.-
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~-w~~r~p~~~Llr~~~~~ih~LlGly 376 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKN-WCTRFPTPLLLRAHEAQIHMLLGLY 376 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHhCCchHHHHHhHHHHHHHHhhH
Confidence 3555555566655441 1233344455667999999999888852 22223331 122233333
Q ss_pred HHccCCHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHH--------HHHH--H
Q 006076 300 CAALAALEQGKMIHGYILRRGLDSILP--VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL--------ISSY--G 367 (662)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l--------i~~~--~ 367 (662)
|...+.++.|+.-|..+.+.--..|.. .-..+.-.|.+.|+.++-.++++.+..+|..++.+- +.|+ .
T Consensus 377 s~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf 456 (629)
T KOG2300|consen 377 SHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAF 456 (629)
T ss_pred hhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 345677888888887776654344433 223456678888888888888888876655443321 1111 2
Q ss_pred hcCChHHHHHHHHHHHH
Q 006076 368 VHGYGGKAIQIFKEMIY 384 (662)
Q Consensus 368 ~~g~~~~A~~~~~~m~~ 384 (662)
..+++.||...+++-.+
T Consensus 457 ~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 457 KQNDLNEAKRFLRETLK 473 (629)
T ss_pred HhccHHHHHHHHHHHHh
Confidence 35666777766666554
No 328
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=72.63 E-value=75 Score=28.80 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=37.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhCC--------------CCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 006076 295 SVLQACAALAALEQGKMIHGYILRRGL--------------DSILPVVSALVTMYARCGKLELGQCVFDH 350 (662)
Q Consensus 295 ~ll~a~~~~~~~~~a~~~~~~~~~~g~--------------~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 350 (662)
+++-.|.+..++.+++++++.+.+..+ .+--.+.|.....+.++|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 556667777888888888887765422 23344556666677777777777777664
No 329
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=72.04 E-value=72 Score=29.95 Aligned_cols=148 Identities=13% Similarity=0.110 Sum_probs=87.6
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHH
Q 006076 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307 (662)
Q Consensus 228 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~ 307 (662)
.+..|.+.-++.-|...++++.+| +.+-.+++ -|.+..+.+---++.+-. +.++++-+...+..++ +...|+..
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-IQSRCAiL-Rysklsd~qiL~Rl~~v~--k~Ekv~yt~dgLeaii--fta~GDMR 209 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-IQSRCAIL-RYSKLSDQQILKRLLEVA--KAEKVNYTDDGLEAII--FTAQGDMR 209 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-HHhhhHhh-hhcccCHHHHHHHHHHHH--HHhCCCCCcchHHHhh--hhccchHH
Confidence 456777778888888888777765 22222222 233433333223333333 4555554444443333 34566666
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006076 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387 (662)
Q Consensus 308 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 387 (662)
+|...++.-.. .-.+-.++.+|+-..+|.+.....|+..+. .+++++|.+++.++.+.|.
T Consensus 210 QalNnLQst~~-------------------g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgy 269 (333)
T KOG0991|consen 210 QALNNLQSTVN-------------------GFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGY 269 (333)
T ss_pred HHHHHHHHHhc-------------------cccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCC
Confidence 66554432221 111233466777777888888888887665 5789999999999999999
Q ss_pred CCCHhHHHHHHHHHh
Q 006076 388 SPSPISFVSVLGACS 402 (662)
Q Consensus 388 ~p~~~t~~~ll~a~~ 402 (662)
.|... .+++..++-
T Consensus 270 sp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 270 SPEDI-ITTLFRVVK 283 (333)
T ss_pred CHHHH-HHHHHHHHH
Confidence 88654 334455543
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.86 E-value=5.7 Score=23.70 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 495 NYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
++..++.+|.+.|++++|.+.++.+.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998864
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=71.76 E-value=2.1e+02 Score=33.67 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=56.8
Q ss_pred HhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH--HHHHHHHHhcCCCHHHHHHH
Q 006076 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS--FVSVLGACSHAGLVEEGKML 413 (662)
Q Consensus 336 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~ 413 (662)
...+.+++|.-.|+..-+ ..--+.+|...|++.+|+.+..+|.. .-|... -..|..-+...++.-+|-++
T Consensus 950 ~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~i 1021 (1265)
T KOG1920|consen 950 REELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKI 1021 (1265)
T ss_pred HHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHH
Confidence 344555555555543321 11124455566666666666555432 112222 14566667777887777777
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 006076 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454 (662)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (662)
..+... .| .--+..|++...+++|..+.....
T Consensus 1022 l~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1022 LLEYLS----DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 765542 12 234566777788888887776654
No 332
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.37 E-value=92 Score=29.31 Aligned_cols=23 Identities=9% Similarity=-0.153 Sum_probs=16.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC
Q 006076 470 RIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
...+++.+|..+|+++....-++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45578889999999887654443
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.90 E-value=41 Score=30.79 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCChHHHH
Q 006076 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR---GLDSILPVVSALVTMYARCGKLELGQ 345 (662)
Q Consensus 270 ~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A~ 345 (662)
+.|++.|-++ ...+.--++. .-..+..+-...+.+++++++-.+.+. +-.+|+.++.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~--E~~~~l~t~e-lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQL--EGTPELETAE-LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHH--cCCCCCCCHH-HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5566666666 4444332332 223333333355666666666655543 22456667777777777777776653
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.82 E-value=54 Score=35.15 Aligned_cols=103 Identities=15% Similarity=0.062 Sum_probs=68.0
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHH
Q 006076 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413 (662)
Q Consensus 334 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 413 (662)
...+.|+++.|.++..+. .+..-|..|..+....|++..|.+.|.+... |..|+-.+...|+-+.-..+
T Consensus 646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 345678888888776544 4567788899888889999888888887654 44566666667766544433
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 006076 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454 (662)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (662)
-.... +.|. .|.-.-+|...|+++++.+++.+-+
T Consensus 715 a~~~~-~~g~------~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 715 ASLAK-KQGK------NNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHH-hhcc------cchHHHHHHHcCCHHHHHHHHHhcC
Confidence 33332 2221 1233345667788888888887664
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.81 E-value=49 Score=29.72 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006076 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525 (662)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 525 (662)
+++|...|+++.+.+|.| ..|..-..+.. .|-++..++.+++..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 566777777888899986 56665555543 577788888776653
No 336
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.73 E-value=11 Score=26.12 Aligned_cols=30 Identities=30% Similarity=0.246 Sum_probs=24.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 006076 465 LLGSCRIHCNVELAERASKRLFELEPTNAG 494 (662)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (662)
+.-++.+.|++++|.+..+.+++.+|+|..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 556788999999999999999999999753
No 337
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.55 E-value=8.2 Score=21.93 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCChHHHHHHHh
Q 006076 329 SALVTMYARCGKLELGQCVFD 349 (662)
Q Consensus 329 ~~li~~y~~~g~~~~A~~~~~ 349 (662)
..+...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666666554
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.26 E-value=2.2e+02 Score=32.43 Aligned_cols=264 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHH----HccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006076 261 ACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC----AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336 (662)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 336 (662)
..+..+|.+.+|++.--.. -|..+...++.-+ -..+++..-......+-..-+..++...-.-+-...
T Consensus 355 ~w~~~~g~~~eAI~hAlaA--------~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~ 426 (894)
T COG2909 355 EWFAEHGLPSEAIDHALAA--------GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLA 426 (894)
T ss_pred HHHHhCCChHHHHHHHHhC--------CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHH
Q ss_pred hcCChHHHHHHHhhCCCCChh-----------HHHHHHHHHHh-cCChHHHHHHHHHHHHc----CCCCCHhHHHHHHHH
Q 006076 337 RCGKLELGQCVFDHMDKRDVV-----------SWNSLISSYGV-HGYGGKAIQIFKEMIYH----GVSPSPISFVSVLGA 400 (662)
Q Consensus 337 ~~g~~~~A~~~~~~m~~~~~~-----------~~~~li~~~~~-~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a 400 (662)
...++++|..+..+....=.. .|+++-..... .|++++|+++.+..... -..+..+.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Q ss_pred HhcCCCHHHHHHHHHHhHHh----cCCCCChHHHHHHHHHHhhcC--CHHHHHHHHHhc------CCCCCHHHHHHHHHH
Q 006076 401 CSHAGLVEEGKMLFESMRKE----HMIRPSVEHYACMVDLLGRAN--KLEEAAKIIEDL------RIEPGPKVWGSLLGS 468 (662)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m------~~~p~~~~~~~ll~~ 468 (662)
..-.|++++|..+.....+. ....-...+-..-...+...| ..++....|... ...........-+..
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeE
Q 006076 469 CRIHCNVELAERASKRLFELEPTNAG-------NYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532 (662)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 532 (662)
+...-+.+.+..-.....+..-.... .+..|+.++...|+.++|...++.+..-.....+.+-|
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
No 339
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=67.96 E-value=29 Score=31.13 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC----hHHHHHHHHHHH
Q 006076 475 VELAERASKRLFELEPTNAGNYVLLADVYAAADM----WDEVKRVKRLLE 520 (662)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~ 520 (662)
+++|..-+++++.++|+...++.+++++|...|. ..+|...|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4567777788888999999999999999987663 345555555543
No 340
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=67.73 E-value=1.2e+02 Score=29.07 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=31.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhcC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 433 MVDLLGRANKLEEAAKIIEDLR-IEP----GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
+..-|.+.|.+..|..-+++|- --| .....-.|..+|...|..++|....+-+....|++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 3445566666665555555551 011 12233345566667777777776665555555554
No 341
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=67.19 E-value=85 Score=27.26 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=11.6
Q ss_pred HHhcCCHHHHHHHHHcCCCC
Q 006076 232 YARFGCVMYAGFVFSQMAVK 251 (662)
Q Consensus 232 y~~~g~~~~A~~~f~~~~~~ 251 (662)
+.+.|++++|.++|+++.+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 44556666666666666543
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.17 E-value=24 Score=32.63 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 430 YACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
.+.-++.+.+.+.+++|+...++- +-+| |...-..++..++..|++++|..-++-.-++.|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344566777888888888776543 4455 45555667788888888888888888888888774
No 343
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.98 E-value=2.1e+02 Score=31.81 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHHHHhcC---CCCc-chH-----HHHHHHHHhcCChHHHHHHHHHHH
Q 006076 472 HCNVELAERASKRLFELE---PTNA-GNY-----VLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
.|+..+..........+. |+.. ..+ ..+.+.|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 577776665555544322 3322 222 245566788899999988887654
No 344
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=66.56 E-value=67 Score=31.27 Aligned_cols=105 Identities=7% Similarity=0.058 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHhc-C-CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 006076 372 GGKAIQIFKEMIY-HGVSPSPISFVSVLGACSH-A-GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448 (662)
Q Consensus 372 ~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~-~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 448 (662)
..+|+++|+.... ..+--|..+...+++.... . .....-.++.+.+...++-.++..+....++.+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4466666653211 1233344455555544332 1 12222233333333333344555555555555555555555555
Q ss_pred HHHhcC----CCCCHHHHHHHHHHHHhcCCHH
Q 006076 449 IIEDLR----IEPGPKVWGSLLGSCRIHCNVE 476 (662)
Q Consensus 449 ~~~~m~----~~p~~~~~~~ll~~~~~~g~~~ 476 (662)
+++... -..|..-|..+|......|+..
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 554431 1124444544554444444433
No 345
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.19 E-value=1.1e+02 Score=28.04 Aligned_cols=89 Identities=12% Similarity=0.056 Sum_probs=59.8
Q ss_pred HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHHhcCCCCCH--HHHHHHHHHHH
Q 006076 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA-----CMVDLLGRANKLEEAAKIIEDLRIEPGP--KVWGSLLGSCR 470 (662)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~p~~--~~~~~ll~~~~ 470 (662)
..++...+++++|..-++.... .|.-+.+. .|.......|.+++|+..++... .++- .....-...+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHH
Confidence 3456778888888888876652 23333333 34556778899999998888764 2221 12223346788
Q ss_pred hcCCHHHHHHHHHHHHhcCCC
Q 006076 471 IHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~ 491 (662)
..|+.++|+..|++.++.+++
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 889999999999999887754
No 346
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.42 E-value=1.4e+02 Score=29.23 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=9.6
Q ss_pred CCCCHhHHHHHHHHHhcCC
Q 006076 387 VSPSPISFVSVLGACSHAG 405 (662)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g 405 (662)
++|+..|-......+...|
T Consensus 219 fPpnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 219 FPPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred cCCcchhHHHHHHHHhHhh
Confidence 4555555555544444444
No 347
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.10 E-value=1.7e+02 Score=29.99 Aligned_cols=64 Identities=19% Similarity=0.154 Sum_probs=51.2
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 006076 458 GPKVWGSL---LGSCRIHCNVELAERASKRLFELEPT-NAGNYVLLADVYA-AADMWDEVKRVKRLLEA 521 (662)
Q Consensus 458 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 521 (662)
|...|.++ +....+.|-+..|.+..+-++.++|. ||-.-...++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455544 45678899999999999999999999 8888888888885 77888888888876654
No 348
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=64.91 E-value=1e+02 Score=27.43 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 429 HYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
.+..+++.+...|++-+|+.+.+..
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3445566666677777777776664
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.55 E-value=33 Score=31.70 Aligned_cols=59 Identities=14% Similarity=0.015 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMR 418 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 418 (662)
|.+..++.+.+.+...+|+...++-.+. +|. .-+-..++.-++-.|++++|..-++...
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3445566777777788888777776664 343 3445556667777788888776666553
No 350
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.36 E-value=58 Score=32.08 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhcCCCCc
Q 006076 477 LAERASKRLFELEPTNA 493 (662)
Q Consensus 477 ~a~~~~~~~~~~~p~~~ 493 (662)
.|.+...++.+.+|.-|
T Consensus 380 ~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVP 396 (556)
T ss_pred HHHHHHHHHhhcCCCCc
Confidence 35566677777777643
No 351
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.33 E-value=2.9e+02 Score=32.47 Aligned_cols=269 Identities=8% Similarity=-0.098 Sum_probs=158.1
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHH
Q 006076 134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV 213 (662)
Q Consensus 134 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~ 213 (662)
...+.+.+..+|..+-...+..+.+.+.. ++...+...... +|...-...+.++..... .......+..+
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D-----~d~~VR~~Aa~aL~~l~~----~~~~~~~L~~~ 692 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD-----GAAAVRRAAAEGLRELVE----VLPPAPALRDH 692 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHh----ccCchHHHHHH
Confidence 34555666678888888888888877754 455555555543 233333344555444321 11111223233
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHH
Q 006076 214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM 293 (662)
Q Consensus 214 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~ 293 (662)
++ .+|..+-.+.+..+...+.- ....+...+..+|...-...+.++.+.+..+.. ... . -.++...-
T Consensus 693 L~---~~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~--l---~D~~~~VR 759 (897)
T PRK13800 693 LG---SPDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGA--A---TDENREVR 759 (897)
T ss_pred hc---CCCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHH--h---cCCCHHHH
Confidence 32 35667766777777654421 223455666777877666777777776554322 222 1 13455555
Q ss_pred HHHHHHHHccCCHHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH-HHHHhhCCCCChhHHHHHHHHHHhcCC
Q 006076 294 VSVLQACAALAALEQ-GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG-QCVFDHMDKRDVVSWNSLISSYGVHGY 371 (662)
Q Consensus 294 ~~ll~a~~~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~m~~~~~~~~~~li~~~~~~g~ 371 (662)
.....++...+..+. +...+..+.+ .+|..+-.+.+..+.+.|..+.+ ..+...+.++|...-...+.++...+.
T Consensus 760 ~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 760 IAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred HHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 666667766665432 2233333332 45788888999999999987655 345555667777666777778877765
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436 (662)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 436 (662)
.++...+..+.+ .|+...=...+.++.+......+...+....+ .+|..+-..-..+
T Consensus 837 -~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~----D~d~~Vr~~A~~a 893 (897)
T PRK13800 837 -DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT----DSDADVRAYARRA 893 (897)
T ss_pred -cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh----CCCHHHHHHHHHH
Confidence 466777766665 56777667777788776444566777766654 3454444443333
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.28 E-value=22 Score=37.76 Aligned_cols=102 Identities=13% Similarity=0.004 Sum_probs=69.7
Q ss_pred hcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 006076 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-R-IEPGPKVWGSLLGSCRIHCNVELAE 479 (662)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~ 479 (662)
.-.|+...|...+.........+.+ .....|.+.+.+.|...+|-.++.+. . ....+.++.++..++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 3467777777777666432211112 23345666677777777777776654 1 2345667778888999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHH
Q 006076 480 RASKRLFELEPTNAGNYVLLADVYA 504 (662)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (662)
+.++.++++.|+++..-..|..+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999998887776655544
No 353
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.96 E-value=77 Score=25.66 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q 006076 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282 (662)
Q Consensus 203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 282 (662)
.++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||..+|-+|-. .+.|..+++...+.++ .
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl--a 96 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL--A 96 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH--H
Confidence 7888889888887763 444454455567788999999955555566789999977754 4788888888888888 5
Q ss_pred hCCCcCCHHHH
Q 006076 283 SHDLCPNSVTM 293 (662)
Q Consensus 283 ~~~~~p~~~t~ 293 (662)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 555 3433333
No 354
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.00 E-value=45 Score=31.17 Aligned_cols=63 Identities=21% Similarity=0.124 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHH-------HHHHHhcC--CC----CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 461 VWGSLLGSCRIHCNVELAERA-------SKRLFELE--PT----NAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~-------~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
.+.-+...|+..|+.+....+ |+++.+.+ |. .......++.++.+.|+.++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 444555667777775544444 44444332 22 23566689999999999999999999988643
No 355
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.53 E-value=19 Score=28.27 Aligned_cols=45 Identities=22% Similarity=0.151 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
...+++.++.+|+|...-..++..+...|++++|.+.+-.+..++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345666777888888888889999999999999998888877654
No 356
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.50 E-value=59 Score=33.77 Aligned_cols=130 Identities=13% Similarity=0.121 Sum_probs=86.2
Q ss_pred HHhcCChHHHH-HHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHH
Q 006076 335 YARCGKLELGQ-CVFDHMD----KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409 (662)
Q Consensus 335 y~~~g~~~~A~-~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 409 (662)
-...|++-.|. ++|+.+. .|+.+...+.| +...|+++.+...+...... +.....+...++...-+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 34468877664 4555554 25555544444 56789999999998776553 45567888999999999999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHH
Q 006076 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSC 469 (662)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~ 469 (662)
|...-+.|.. ..++ +++....-...--..|.++++...+++. .+ +|...-|..+++.-
T Consensus 376 a~s~a~~~l~-~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~ 435 (831)
T PRK15180 376 ALSTAEMMLS-NEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSST 435 (831)
T ss_pred HHHHHHHHhc-cccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccc
Confidence 9999888863 3332 3333333333334567888998888877 22 34555566666553
No 357
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=61.46 E-value=3.3e+02 Score=32.07 Aligned_cols=255 Identities=6% Similarity=-0.133 Sum_probs=121.9
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 006076 242 GFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321 (662)
Q Consensus 242 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 321 (662)
..+...+.++|...--.-+..+.+.+. ++++..+.+. .. .+|...-...+.++...+........+..+.+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~a--L~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~--- 694 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAA--LG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG--- 694 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHH--Hc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---
Confidence 344555556666666666666666654 3344444444 21 22333333444444433211111122222222
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401 (662)
Q Consensus 322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (662)
.+|..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++
T Consensus 695 ~~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL 766 (897)
T PRK13800 695 SPDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGL 766 (897)
T ss_pred CCCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHH
Confidence 24555555666666554321 12344455556666665666666665544322 11222 244555555555666
Q ss_pred hcCCCHHH-HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006076 402 SHAGLVEE-GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480 (662)
Q Consensus 402 ~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~ 480 (662)
...+..+. +...+..+.+ .++...-...+..+++.|..+.+...+..+-..+|..+=...+.++...+. +++..
T Consensus 767 ~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred HHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHH
Confidence 66554332 2334444432 456777777777777777665543333333224555555556666666654 33444
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
.+..+++ +| +...-...+.++.+.+.-.++...+....
T Consensus 842 ~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 842 ALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4444442 22 23344444555555422334444444443
No 358
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.93 E-value=71 Score=26.05 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIY 384 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (662)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588889999999999999999988877
No 359
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.82 E-value=2.3e+02 Score=31.54 Aligned_cols=179 Identities=14% Similarity=0.201 Sum_probs=87.1
Q ss_pred HHHHHHHHhCCCCch---hHHHHHHHHHHhcCChHHHHHHHhhCCC-CChh----------HHHHHHHHHHhcCChHHHH
Q 006076 311 MIHGYILRRGLDSIL---PVVSALVTMYARCGKLELGQCVFDHMDK-RDVV----------SWNSLISSYGVHGYGGKAI 376 (662)
Q Consensus 311 ~~~~~~~~~g~~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~----------~~~~li~~~~~~g~~~~A~ 376 (662)
.++.+|.++--.|++ .+...++-.|-...+++...++.+.++. ||.. .|.--++---+-|+-++|+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL 263 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKAL 263 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHH
Confidence 344445444333332 2333344445555666666666655542 2211 1222222222346667777
Q ss_pred HHHHHHHHc-C-CCCCHhHH-----HHH--HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC-HHHH
Q 006076 377 QIFKEMIYH-G-VSPSPISF-----VSV--LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK-LEEA 446 (662)
Q Consensus 377 ~~~~~m~~~-g-~~p~~~t~-----~~l--l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A 446 (662)
...-.|.+. | +.||.... --+ -+.|...+..+.|.+.|++.- .+.|+..+--.+...+...|. ++..
T Consensus 264 ~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 264 NTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFENS 340 (1226)
T ss_pred HHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccch
Confidence 766666553 2 55665432 111 123445566677777776553 356655443333333333332 2221
Q ss_pred HHHH------Hhc-CCCCC----HHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 447 AKII------EDL-RIEPG----PKVW--GSLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 447 ~~~~------~~m-~~~p~----~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
.++- ..+ +.+-. ...| ...+.+-.-.+++..|.++.+.|.+++|+.
T Consensus 341 ~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 341 LELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 1110 000 11111 0111 234555666789999999999999999874
No 360
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.28 E-value=1.5e+02 Score=27.92 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=52.0
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076 359 WNSLISSYG--VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436 (662)
Q Consensus 359 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 436 (662)
|...+.||- .++++++|++.+-.- .+.|+... .++.++...|+.+.|..+++...- ...+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 334444443 345566666655211 12222211 355566666777777777765521 11223333333333
Q ss_pred HhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006076 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472 (662)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 472 (662)
..++.+.||..+-+...-+-....|..++..|...
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 45577777777776654211234566666665543
No 361
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.07 E-value=92 Score=25.25 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383 (662)
Q Consensus 304 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 383 (662)
...++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356677777777766553 222333333445677888888844444455688888877654 46777777777777776
Q ss_pred HcCCCCCHhHH
Q 006076 384 YHGVSPSPISF 394 (662)
Q Consensus 384 ~~g~~p~~~t~ 394 (662)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 654 3444444
No 362
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=59.48 E-value=55 Score=27.79 Aligned_cols=48 Identities=15% Similarity=0.037 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHh-cCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 474 NVELAERASKRLFE-LEPTN-AGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 474 ~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
+..+++.+++.+.+ -.|.. ......|+-.+.+.|+++.+.++.+.+.+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 45566667777665 33332 22334455666777777777777776654
No 363
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.24 E-value=95 Score=33.43 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=69.4
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHH
Q 006076 231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310 (662)
Q Consensus 231 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (662)
...+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+. + -|..++-.+...|+-+...
T Consensus 646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a--~---------d~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRA--R---------DLGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhh--c---------chhhhhhhhhhcCChhHHH
Confidence 345678888888876554 35677889999999999999998888755 2 2456666677777766655
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006076 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351 (662)
Q Consensus 311 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 351 (662)
.+-....+.|.. |.-.-+|...|+++++.+++.+-
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 555555555522 23334566677887777776654
No 364
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.95 E-value=1.5e+02 Score=31.02 Aligned_cols=191 Identities=18% Similarity=0.144 Sum_probs=94.2
Q ss_pred HHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHcCCCCCHh--HHHHHHHHHHHcCChhHHHHHHHHHhhhhC
Q 006076 209 IHASVLRHGYNGIVHI--MTTLIDMYARFGCVMYAGFVFSQMAVKNVV--SWSAMIACYARNGMAFEALELFREMIMESH 284 (662)
Q Consensus 209 ~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 284 (662)
+.+.+++.|..++... ..+.+...++.|+.+-+.-+++.-..++.. ...+.+...+..|+.+.+..+++.- ...
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~--~~~ 94 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG--KFA 94 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC--Ccc
Confidence 4445556676665432 345566667788888777776654333221 1123344556778877665555422 110
Q ss_pred CCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHHhhCCC---CChhHH
Q 006076 285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV--VSALVTMYARCGKLELGQCVFDHMDK---RDVVSW 359 (662)
Q Consensus 285 ~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~ 359 (662)
.-..+..-. +.+...+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.-.. +|..-+
T Consensus 95 ~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~ 169 (413)
T PHA02875 95 DDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGC 169 (413)
T ss_pred cccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Confidence 000111111 2233334455553 4455566666554321 22344555677888777777765443 233333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH---HHHHHHHhcCCCHHHHH
Q 006076 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF---VSVLGACSHAGLVEEGK 411 (662)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~ 411 (662)
+.+..+ +..|+. ++.+.+.+.|..|+...- .+++......|+.+-+.
T Consensus 170 TpL~~A-~~~g~~----eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~ 219 (413)
T PHA02875 170 TPLIIA-MAKGDI----AICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVR 219 (413)
T ss_pred CHHHHH-HHcCCH----HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHH
Confidence 344333 334553 344556667776664321 23444334456654433
No 365
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.70 E-value=34 Score=32.15 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006076 442 KLEEAAKIIEDL-RIEPGP-KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519 (662)
Q Consensus 442 ~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (662)
+++.|..-+.+. -+.|+. ..|..=+-.+.+..+++.+..--.+.+++.|+.......|+........+++|+..+.+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 344444433332 344554 334444444555566666666666666666666666666666666666666666666655
No 366
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.57 E-value=1.3e+02 Score=32.23 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC--CChh---HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076 329 SALVTMYARCGKLELGQCVFDHMDK--RDVV---SWNSLISSYGVHGYGGKAIQIFKEMIY 384 (662)
Q Consensus 329 ~~li~~y~~~g~~~~A~~~~~~m~~--~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (662)
..|+.-|.+++++++|..++..|.= -... +.+.+.+.+.+..-..+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3577789999999999999998861 1222 333344444444434444444444443
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.21 E-value=20 Score=23.74 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=21.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 498 LLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
.|+.+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57889999999999999999887543
No 368
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.17 E-value=94 Score=26.91 Aligned_cols=80 Identities=11% Similarity=0.248 Sum_probs=59.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHhcCCC---------CCcchHHHHHHHHHhcCC-ccHHHHHHHHHhhCCCCCCCChhhH
Q 006076 117 LVTKLINVYSHFDSVDDARHVFDKTRR---------RTIYVWNALFRALTLAGR-GEEVLELYRRMNGTGTGIRSDRFTY 186 (662)
Q Consensus 117 ~~~~li~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~~~g~~p~~~t~ 186 (662)
..|.++.-....+.+.-...+++.+.. .+-.+|+.++.+.++..- ---+..+|.-|.+. +.+++..-|
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~--~~~~t~~dy 118 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKN--DIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHc--CCCCCHHHH
Confidence 356666666666666666666665532 356789999999977665 45678899999987 789999999
Q ss_pred HHHHHHHHhCCC
Q 006076 187 TYVLKACVASSC 198 (662)
Q Consensus 187 ~~ll~~~~~~~~ 198 (662)
..++++|.+...
T Consensus 119 ~~li~~~l~g~~ 130 (145)
T PF13762_consen 119 SCLIKAALRGYF 130 (145)
T ss_pred HHHHHHHHcCCC
Confidence 999999877643
No 369
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.83 E-value=1.4e+02 Score=27.51 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=53.5
Q ss_pred HhcCCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHhcC
Q 006076 401 CSHAGLVEEGKMLFESMRKEHMIRPS-----VEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGP-KVWGSLLGSCRIHC 473 (662)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g 473 (662)
+...|++++|..-|...... .++. ...|..-..++.+.+.++.|++-..+. .+.|+. ....--..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34456666666666655532 1221 223444455667777777777655544 333421 11222234677778
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 006076 474 NVELAERASKRLFELEPTN 492 (662)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~ 492 (662)
.+++|+.-|+++++.+|..
T Consensus 183 k~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHhCcch
Confidence 8999999999999999974
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.74 E-value=3.2e+02 Score=30.44 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHHhC---CCCChhHHHHHHHHhh--cCCChHHHHHHHhcCC-------------CCCcchHHHHHHH
Q 006076 94 NSLSDALNVHSHLTDNG---FDQDPFLVTKLINVYS--HFDSVDDARHVFDKTR-------------RRTIYVWNALFRA 155 (662)
Q Consensus 94 ~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~--~~g~~~~A~~~f~~~~-------------~~~~~~~~~li~~ 155 (662)
++...|.+.++.+.... -.|-..++-.++.+.. +.+..+++.+..+++. .+-..+|..++..
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 67787888777766543 2333344444443333 3344455554444331 1123456666554
Q ss_pred H--HhcCCccHHHHHHHHH
Q 006076 156 L--TLAGRGEEVLELYRRM 172 (662)
Q Consensus 156 ~--~~~g~~~~A~~l~~~m 172 (662)
+ ...|+++.+...++++
T Consensus 233 ~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3 3456665665555544
No 371
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.54 E-value=2.5e+02 Score=29.23 Aligned_cols=198 Identities=12% Similarity=-0.014 Sum_probs=100.3
Q ss_pred HHHHHHhCCCchHHHHHHhcCCCCCHhh--HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHhhcCCC
Q 006076 55 LIQSLCKQGNLRQALDVLSIEPNPTQHT--YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPF--LVTKLINVYSHFDS 130 (662)
Q Consensus 55 li~~~~~~g~~~~A~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~ 130 (662)
-+...++.|+.+-+..+++.|..|+... ..+.+..++..|+.+ +...+.+.|..|+.. .....+...++.|+
T Consensus 5 ~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 5 ALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3445566788888777777666555432 233455555667765 444555666554432 12234455567788
Q ss_pred hHHHHHHHhcCCCC----CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhH--HHHHHHHHhCCCCccchH
Q 006076 131 VDDARHVFDKTRRR----TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTY--TYVLKACVASSCGFSLLK 204 (662)
Q Consensus 131 ~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~--~~ll~~~~~~~~~~~~~~ 204 (662)
.+.+..+++.-... +..-++ .+...+..|+. ++++.+.+. |..|+.... .+.+...+..++ .+
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~--gad~~~~~~~g~tpLh~A~~~~~----~~ 149 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIAR--GADPDIPNTDKFSPLHLAVMMGD----IK 149 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhC--CCCCCCCCCCCCCHHHHHHHcCC----HH
Confidence 88888887654322 111122 23333445554 344445555 555543211 122333334454 44
Q ss_pred HHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhH---HHHHHHHHHHcCChhH
Q 006076 205 HGKEIHASVLRHGYNGIV--HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVS---WSAMIACYARNGMAFE 271 (662)
Q Consensus 205 ~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~ 271 (662)
. ...+++.|..++. ....+-+...+..|+.+-+.-+++.-..++... ..+.+...+..|+.+-
T Consensus 150 ~----v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i 217 (413)
T PHA02875 150 G----IELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI 217 (413)
T ss_pred H----HHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH
Confidence 3 3444555544332 112234455566788877777777655443221 1234443455666543
No 372
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.39 E-value=3.1e+02 Score=30.13 Aligned_cols=51 Identities=24% Similarity=0.202 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhCCCc
Q 006076 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAA-DMWDEVKRVKRLLEARGLQ 525 (662)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 525 (662)
.+.+.|...++++.+.++ +.+...+...+.-. ++++.+.-.+..+.+.|..
T Consensus 378 r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 356777777777777663 23333333333221 6777777777666665553
No 373
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=56.17 E-value=2.1e+02 Score=28.07 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=15.6
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 006076 500 ADVYAAADMWDEVKRVKRLL 519 (662)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m 519 (662)
+....+.++|++|.+.++.-
T Consensus 253 ~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHH
Confidence 44567889999999998853
No 374
>PRK10941 hypothetical protein; Provisional
Probab=56.06 E-value=83 Score=30.64 Aligned_cols=67 Identities=15% Similarity=0.033 Sum_probs=51.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 006076 430 YACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496 (662)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (662)
.+.+-..|.+.++++.|+.+.+.+ .+.| |+.-|.--.-.|.+.|....|..-++..++..|+++.+-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 345667788888888888888877 3445 455577677778888999999999999998888876543
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.81 E-value=2.1e+02 Score=29.62 Aligned_cols=53 Identities=13% Similarity=0.047 Sum_probs=36.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHh--cCCCHHHHHHHHHHhHH
Q 006076 366 YGVHGYGGKAIQIFKEMIYHGVSPSPI--SFVSVLGACS--HAGLVEEGKMLFESMRK 419 (662)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 419 (662)
+...+++..|.++|.++... ++++.. .+..+..+|. ..-++++|.+.++...+
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33678888999999888886 555554 3444444444 35677888888887764
No 376
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.34 E-value=10 Score=39.27 Aligned_cols=94 Identities=10% Similarity=0.051 Sum_probs=60.1
Q ss_pred HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHH-HHHHHHhhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHhcCC
Q 006076 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA-CMVDLLGRANKLEEAAKIIEDL-RIEPGP-KVWGSLLGSCRIHCN 474 (662)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~ 474 (662)
++.....+.++.|..++..+.+ +.|+-..|- .=..++.+.+++..|+.=..+. ...|+. ..|--=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4445566778888888888764 466544433 3336777888887777554443 444432 233333456666777
Q ss_pred HHHHHHHHHHHHhcCCCCcc
Q 006076 475 VELAERASKRLFELEPTNAG 494 (662)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~ 494 (662)
+.+|...++....+.|+++.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 88888888888888887653
No 377
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.31 E-value=1.7e+02 Score=26.80 Aligned_cols=88 Identities=10% Similarity=0.002 Sum_probs=53.2
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhH--HHHHHHHHHhcCChHH
Q 006076 299 ACAALAALEQGKMIHGYILRRGLDSI--LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS--WNSLISSYGVHGYGGK 374 (662)
Q Consensus 299 a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~ 374 (662)
.+...++++.|...++.......+.+ ..+--.|.......|.+++|.++++....++-.+ -..-.+.+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 34566677777666665554321111 1111234555667788888888888777665443 2223456777888888
Q ss_pred HHHHHHHHHHcC
Q 006076 375 AIQIFKEMIYHG 386 (662)
Q Consensus 375 A~~~~~~m~~~g 386 (662)
|..-|.+.+..+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 888888777754
No 378
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=55.26 E-value=23 Score=20.72 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 006076 473 CNVELAERASKRLFELEPTNAGNYVLLAD 501 (662)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (662)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677888888888877776666665543
No 379
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.25 E-value=9.1 Score=37.73 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076 441 NKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 441 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (662)
|.+++|++.|... +..| ....|..-.+++.+.++...|++-+...++++|+...-|-.-..+-.-.|.|++|.+.+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 4445555444433 2222 2233333334445555555555555555555555555554444444555555555555555
Q ss_pred HHhCCC
Q 006076 519 LEARGL 524 (662)
Q Consensus 519 m~~~~~ 524 (662)
..+.++
T Consensus 208 a~kld~ 213 (377)
T KOG1308|consen 208 ACKLDY 213 (377)
T ss_pred HHhccc
Confidence 555444
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.94 E-value=48 Score=30.35 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490 (662)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (662)
|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444444444444444444444
No 381
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=54.92 E-value=3.1e+02 Score=29.72 Aligned_cols=127 Identities=12% Similarity=0.078 Sum_probs=86.0
Q ss_pred CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHh-cCCChHHHHHH
Q 006076 27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCT-HHNSLSDALNV 102 (662)
Q Consensus 27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~ 102 (662)
.++.++.+. +.+..+-|....= |-....-=.+-|..+.+..+|+ .+.+.+...|...+.-+. ..|+.+..+..
T Consensus 60 ~~~~~r~~y-~~fL~kyPl~~gy--W~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 60 DVDALREVY-DIFLSKYPLCYGY--WKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHH-HHHHhhCccHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 455666777 6665555543322 5556666678899999999999 555666666666554443 56788888889
Q ss_pred HHHHHHh-CCC-CChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHH
Q 006076 103 HSHLTDN-GFD-QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL 156 (662)
Q Consensus 103 ~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 156 (662)
|+.++.. |.+ .....|...|..-..++++.....+++++.+-....++..-.-|
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f 192 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRF 192 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHH
Confidence 9888764 322 23456778888888889999999999988765554555444444
No 382
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.58 E-value=72 Score=24.73 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHH
Q 006076 99 ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVL 166 (662)
Q Consensus 99 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 166 (662)
+.+++..+.+.|+- +......+-..-...|+.+.|+++++.++ +....|...+.++-..|+-+-|-
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 45677777777742 33333333333335688999999999999 88889999999998888765554
No 383
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=54.33 E-value=3.5e+02 Score=30.16 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=41.1
Q ss_pred CCCChHHHHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHhcCCC-------hHHHHHHHHHHHHhCCCCChh
Q 006076 48 SSRNKNELIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNS-------LSDALNVHSHLTDNGFDQDPF 116 (662)
Q Consensus 48 ~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~ 116 (662)
+..+--++|--+.|.|.+++|+++.. .........|...+..+....+ -+....-+++..+.....|++
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 33344468888999999999999983 4455566777888888876432 223444455555443333554
No 384
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.47 E-value=1.7e+02 Score=26.26 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=24.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHh
Q 006076 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420 (662)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 420 (662)
.+|-+++.....+-+-..|-+.-...-..|.-+-.+.|++..|.+.|..+..+
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 34555554444444333322222222233444445566666666666665543
No 385
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.27 E-value=1.2e+02 Score=24.75 Aligned_cols=25 Identities=24% Similarity=0.603 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH
Q 006076 255 SWSAMIACYARNGMAFEALELFREM 279 (662)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m 279 (662)
-|..++.-|...|..++|++++.+.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHH
Confidence 4888999999999999999999988
No 386
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.96 E-value=93 Score=29.48 Aligned_cols=88 Identities=16% Similarity=0.081 Sum_probs=63.1
Q ss_pred HHHHhhcCCHHHHHHHHHhc---------CCCCCHHHHHH-----------HHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076 434 VDLLGRANKLEEAAKIIEDL---------RIEPGPKVWGS-----------LLGSCRIHCNVELAERASKRLFELEPTNA 493 (662)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~~-----------ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (662)
.+-+.+.|++.||..-|.+. .-+|...-|.- +-..+...|++-++++.-..++..+|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34456677777776665543 23455444432 22445567888888888889999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 494 GNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.+|..-+.+.+..-+.++|..=+.+..+
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 9999988888888888888888877765
No 387
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.33 E-value=3.4e+02 Score=29.39 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=37.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHHH-hcCChHHHHHHHHHHH
Q 006076 467 GSCRIHCNVELAERASKRLFELEPT-NAGNYVLLADVYA-AADMWDEVKRVKRLLE 520 (662)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 520 (662)
....+.|-+..|.+..+.+++++|. ||.....+++.|+ ++.++.=-+++++...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4456677788888888888888887 7777777777775 5566666666666553
No 388
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.81 E-value=3.2e+02 Score=28.92 Aligned_cols=298 Identities=9% Similarity=-0.017 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCC-----------------CCCcchHHHHHHH
Q 006076 93 HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR-----------------RRTIYVWNALFRA 155 (662)
Q Consensus 93 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-----------------~~~~~~~~~li~~ 155 (662)
.+.++.-.++...+...|....++.+|.-+..|.+.|....-..+=+-.. ..+.+.+-...-.
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi 109 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVI 109 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhee
Q ss_pred HHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006076 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235 (662)
Q Consensus 156 ~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 235 (662)
|.....+..|+++....... .+.-++-+...+-. .....|...
T Consensus 110 ~yh~~~~g~a~~~~~~lv~r---------------------------~e~le~~~aa~v~~----------l~~~l~~~t 152 (696)
T KOG2471|consen 110 FYHHEENGSAMQLSSNLVSR---------------------------TESLESSSAASVTL----------LSDLLAAET 152 (696)
T ss_pred eeeHhhcchHHHhhhhHHHH---------------------------HHHHHHHHHHHHHH----------HHHHHHHHH
Q ss_pred CCHHHHHHHHHcCCCC------CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHH
Q 006076 236 GCVMYAGFVFSQMAVK------NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309 (662)
Q Consensus 236 g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 309 (662)
.+.++|..+.+-+.+. ..+.-+.-.....+.+.+..|..-|.-. .|.....-.-..++....++..+
T Consensus 153 ~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a-------~~k~~~~~ykVr~llq~~~Lk~~ 225 (696)
T KOG2471|consen 153 SQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTA-------DLKLELQLYKVRFLLQTRNLKLA 225 (696)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccCCcchhcccchhh-------ccchhhhHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC------------CChhHHHHHHHHHHhcCChHHHHH
Q 006076 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK------------RDVVSWNSLISSYGVHGYGGKAIQ 377 (662)
Q Consensus 310 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------~~~~~~~~li~~~~~~g~~~~A~~ 377 (662)
+.-.+.+.... ..+....-.--..+.-.|++.+|.+++....- ..-+.||.|...+.+.|.+.-+..
T Consensus 226 krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~ 304 (696)
T KOG2471|consen 226 KREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSV 304 (696)
T ss_pred HHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHH
Q ss_pred HHHHHHH-------cCCCCC-----------HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 006076 378 IFKEMIY-------HGVSPS-----------PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438 (662)
Q Consensus 378 ~~~~m~~-------~g~~p~-----------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 438 (662)
+|.+..+ .|++|. ..+|+.-+ .+.+.|++-.|.+.|....+.+ ..++..|-.|...|.
T Consensus 305 ~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 305 LFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.99 E-value=44 Score=25.33 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=8.3
Q ss_pred HHHHHHHHhhcCCHHHHHH
Q 006076 430 YACMVDLLGRANKLEEAAK 448 (662)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~ 448 (662)
..+|+.+|+..|++.++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 390
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.79 E-value=1.9e+02 Score=28.16 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=44.7
Q ss_pred HHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 006076 260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR-- 337 (662)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-- 337 (662)
|.+++..+++.+++...-+--...+.++|...-. -|-.|++.+....+.++-..-.+..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 6788888888888765443321233344433222 233355666666665555554443222233335555555543
Q ss_pred ---cCChHHHHHHH
Q 006076 338 ---CGKLELGQCVF 348 (662)
Q Consensus 338 ---~g~~~~A~~~~ 348 (662)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35555555544
No 391
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.23 E-value=46 Score=25.22 Aligned_cols=45 Identities=9% Similarity=-0.009 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCChHHHHHH
Q 006076 471 IHCNVELAERASKRLFELEPTNAG---NYVLLADVYAAADMWDEVKRV 515 (662)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~ 515 (662)
...+.+.|+..++++++..++.+. ++..|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777765544333 344566667777777776654
No 392
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=47.75 E-value=3.8e+02 Score=28.61 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006076 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338 (662)
Q Consensus 289 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 338 (662)
|.....+++..++......-.+.+-.++...| .+-..+..+...|...
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en 112 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN 112 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc
Confidence 44444444444444444444444444444433 1233344444444444
No 393
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.69 E-value=87 Score=28.65 Aligned_cols=52 Identities=17% Similarity=0.022 Sum_probs=35.0
Q ss_pred hcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
....+.+......+.+.+.....|++.+|..++..+...|+.++|.+...++
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555555555555444433345688888888888888888888888877776
No 394
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=46.69 E-value=44 Score=22.11 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=10.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 006076 363 ISSYGVHGYGGKAIQIFKEMIY 384 (662)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~ 384 (662)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444455555555555554443
No 395
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=46.60 E-value=1.2e+02 Score=25.40 Aligned_cols=70 Identities=16% Similarity=0.300 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
+..+-++.+..-.+.|++......|.||.+.+++..|.++|+-++.+. .+....|-.+++ +-..+.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHHH---------HHHHHHHHh
Confidence 455566677777789999999999999999999999999999986543 333335655543 344555665
Q ss_pred C
Q 006076 454 R 454 (662)
Q Consensus 454 ~ 454 (662)
+
T Consensus 136 G 136 (149)
T KOG4077|consen 136 G 136 (149)
T ss_pred C
Confidence 5
No 396
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=46.45 E-value=89 Score=26.95 Aligned_cols=63 Identities=19% Similarity=0.099 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508 (662)
Q Consensus 443 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (662)
-+.|.++.+-|+ .....-.........|++..|..+.+.++..+|+|..+-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 356677777775 233333445556778999999999999999999998888888887766553
No 397
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.45 E-value=2.5e+02 Score=27.31 Aligned_cols=124 Identities=18% Similarity=0.154 Sum_probs=59.3
Q ss_pred HHHHhcCCccHHHHHHHHHhhCCCCCCCChhh-------HHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHH
Q 006076 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFT-------YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226 (662)
Q Consensus 154 ~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t-------~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 226 (662)
+-.++.+++++|+..|.+.... |+..|..+ ...+...+.+.|+...--+...+.-+.|....-+...-+..
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~k--g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGK--GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcC--CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3445567777777777777776 66555433 33444555555551111111111112222222222334444
Q ss_pred HHHHHHHhc-CCHHHHHHHHHcCCC----CC-----HhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006076 227 TLIDMYARF-GCVMYAGFVFSQMAV----KN-----VVSWSAMIACYARNGMAFEALELFREM 279 (662)
Q Consensus 227 ~li~~y~~~-g~~~~A~~~f~~~~~----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (662)
+|++.+-.. ..++.-..+.....+ .. ...-.-+|..+.+.|.+.+|+.+....
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 555544332 234444444333221 00 111234677888888888888765443
No 398
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=44.68 E-value=3.1e+02 Score=26.84 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=32.2
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCChhHHHHHHHHHHhcCChHHHHH
Q 006076 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMD-----KRDVVSWNSLISSYGVHGYGGKAIQ 377 (662)
Q Consensus 321 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~ 377 (662)
-.++..+...++..+++.+++..-.++++... ..|...|..+|..-...|+..-..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 34455555556666666666666666555433 2355566666666666666543333
No 399
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=43.95 E-value=3.7e+02 Score=27.52 Aligned_cols=192 Identities=20% Similarity=0.240 Sum_probs=112.5
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH--HHHHHcCCCCCHhHHHHHHH
Q 006076 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIF--KEMIYHGVSPSPISFVSVLG 399 (662)
Q Consensus 322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~~~g~~p~~~t~~~ll~ 399 (662)
..+..+...+++.+...++|+.--+... ...-++|+...|+.-. +-|.-..-.||..|-..++.
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~ 114 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIE 114 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHH
Confidence 3445555666667776666655333221 1223456666665422 22222223566666555555
Q ss_pred HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHH------------HH
Q 006076 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL------------LG 467 (662)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~ 467 (662)
.+... .++. +|-+. -....-..|...+-.+|++++|.+++.+.++ .||.++ +.
T Consensus 115 tLr~V---tegk-IyvEv-------ERarlTk~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmr 179 (439)
T KOG1498|consen 115 TLRTV---TEGK-IYVEV-------ERARLTKMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMR 179 (439)
T ss_pred HHHHh---hcCc-eEEee-------hHHHHHHHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHH
Confidence 43211 1110 00000 0122334567778889999999999998863 344433 35
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC---CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEE
Q 006076 468 SCRIHCNVELAERASKRLFELE---PTN----AGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540 (662)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~ 540 (662)
.|...+|+-.|.-+.+++...- |+- ...|..++......+.+=++-+.++.+-..|-.+...--|+..-..+-
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv 259 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIV 259 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhe
Confidence 6788889988888888876432 221 236788899998999999999999999887765554445765544443
Q ss_pred EE
Q 006076 541 SF 542 (662)
Q Consensus 541 ~~ 542 (662)
.|
T Consensus 260 ~f 261 (439)
T KOG1498|consen 260 SF 261 (439)
T ss_pred eE
Confidence 33
No 400
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.81 E-value=34 Score=38.24 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=56.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006076 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNV 475 (662)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~ 475 (662)
++|..+.+.|-++-|+.+.+.-..++ +....+|+++.|++.-.+.. |..+|..|...-..+|+.
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~ 688 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNH 688 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcch
Confidence 34555566777777776654433222 34557899999988887765 778899999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 006076 476 ELAERASKRLFELE 489 (662)
Q Consensus 476 ~~a~~~~~~~~~~~ 489 (662)
+.|+..|++....+
T Consensus 689 ~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 689 QIAEMCYQRTKNFE 702 (1202)
T ss_pred HHHHHHHHHhhhhh
Confidence 99998888776543
No 401
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.63 E-value=3e+02 Score=26.00 Aligned_cols=113 Identities=13% Similarity=0.145 Sum_probs=58.4
Q ss_pred cCChHHHHHHHhhCCCCChhHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 006076 338 CGKLELGQCVFDHMDKRDVVSW--NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415 (662)
Q Consensus 338 ~g~~~~A~~~~~~m~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 415 (662)
.+++++|.+.+- +|.+..| .-++.++...|+.+.|+.+++.+.-..- +......++.+ ...+.+.+|..+-+
T Consensus 91 ~~~~~~A~~~L~---~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 91 HGDFEEALELLS---HPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred hHhHHHHHHHhC---CCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 355666666653 3332211 2367777777888888888776433211 11222233333 44578888877666
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHH
Q 006076 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK 460 (662)
Q Consensus 416 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 460 (662)
...+. -....+..++..+.....-....+.+-.+|+.+...
T Consensus 165 ~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 165 SYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred hCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 55321 113456666666654433233344444556554443
No 402
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.57 E-value=1.7e+02 Score=24.56 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=33.0
Q ss_pred HHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076 477 LAERASKRLFE--LEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 477 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (662)
.+..+|+.+.. ++-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888875 4556677888899999999999999998864
No 403
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.54 E-value=27 Score=29.46 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=24.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401 (662)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (662)
.-|.-..|..+|++|++.|-+||. |+.|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345666899999999999999985 56666654
No 404
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.48 E-value=80 Score=30.85 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=27.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (662)
.+.|+.++|..+|+.++.+.|+++....-++.......++-+|-+.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 35566666666666666666666665555555544444444444444
No 405
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.30 E-value=4.2e+02 Score=27.34 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076 325 LPVVSALVTMYARCGKLELGQCVFDHMDK------RDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384 (662)
Q Consensus 325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (662)
...+.-+.+-|..||+++.|.+.+.+..+ .-+..|-.+|..-.-.|++........+...
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34567788899999999999999988653 1233555556555566777777666666554
No 406
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=41.20 E-value=1.3e+02 Score=25.16 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=32.8
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490 (662)
Q Consensus 452 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (662)
.+.+-|++.+...-+.+|++.+|+..|.++++-+...-+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 345779999999999999999999999999998875443
No 407
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.99 E-value=1e+02 Score=20.76 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=21.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 006076 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399 (662)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (662)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666677777777777777666666665554
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.55 E-value=94 Score=24.45 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=35.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC---------cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 470 RIHCNVELAERASKRLFELEPTN---------AGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.+.|++..|.+.+.+..+..... ..+...++.+....|.+++|...+++...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46678888877777776532211 12334577788899999999999987654
No 409
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=40.48 E-value=1.8e+02 Score=28.34 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCCchHHHHHHh------cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhh
Q 006076 53 NELIQSLCKQGNLRQALDVLS------IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS 126 (662)
Q Consensus 53 ~~li~~~~~~g~~~~A~~~~~------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 126 (662)
..=|++++..+++.+++...- +..+| .....-|-.|.+.+.+....++-+.-+...-..+..-|.++...|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 345677777777777765433 22232 3333344446677777776666665555432223334555555554
Q ss_pred -----cCCChHHHHHHH
Q 006076 127 -----HFDSVDDARHVF 138 (662)
Q Consensus 127 -----~~g~~~~A~~~f 138 (662)
-.|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 335555555554
No 410
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=40.05 E-value=3.8e+02 Score=26.46 Aligned_cols=165 Identities=17% Similarity=0.153 Sum_probs=86.7
Q ss_pred hHHHhhccccchhhhccCC--------CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCC
Q 006076 8 QTPQLLRSPYHTNSIAHLP--------PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPT 79 (662)
Q Consensus 8 ~~~~~~g~~~~~~li~~y~--------~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~ 79 (662)
+..+..|..-.|.|.+.|- ...-|.++|...+.++|. |.+|+.+-+.+.-++-+++| +|+
T Consensus 155 al~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i--------~~lis~Lrkg~md~rLmeff----Ppn 222 (412)
T KOG2297|consen 155 ALLLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKDI--------NDLISSLRKGKMDDRLMEFF----PPN 222 (412)
T ss_pred HHHHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhccH--------HHHHHHHHhcChHhHHHHhc----CCc
Confidence 3445556653444444444 667789999556666653 44888887777666666664 566
Q ss_pred HhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHH-hcCCC-----CCc--chHHH
Q 006076 80 QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVF-DKTRR-----RTI--YVWNA 151 (662)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f-~~~~~-----~~~--~~~~~ 151 (662)
..+-......+...|- .+-.+.++.-...| .-...-..|..-..+-..+++..... ++|.+ +.+ +.|..
T Consensus 223 krs~E~Fak~Ft~agL-~elvey~~~q~~~~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~ 299 (412)
T KOG2297|consen 223 KRSVEHFAKYFTDAGL-KELVEYHRNQQSEG--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSG 299 (412)
T ss_pred chhHHHHHHHHhHhhH-HHHHHHHHHHHHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhh
Confidence 6665555555555442 22222222111100 01112233344444444555554443 23333 222 57999
Q ss_pred HHHHHHhcCCcc-HHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCC
Q 006076 152 LFRALTLAGRGE-EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC 198 (662)
Q Consensus 152 li~~~~~~g~~~-~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~ 198 (662)
++++---+.+-+ -|.+.++.+ .+|.-+|.+++..|.
T Consensus 300 iMsaveWnKkeelva~qalrhl-----------K~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 300 IMSAVEWNKKEELVAEQALRHL-----------KQYAPLLAAFCSQGQ 336 (412)
T ss_pred hhHHHhhchHHHHHHHHHHHHH-----------HhhhHHHHHHhcCCh
Confidence 988755443221 233333333 357888999888877
No 411
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.92 E-value=2.1e+02 Score=30.77 Aligned_cols=54 Identities=19% Similarity=0.125 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCCC--CH---hHHHHHHHHHHHcCChhHHHHHHHHH
Q 006076 226 TTLIDMYARFGCVMYAGFVFSQMAVK--NV---VSWSAMIACYARNGMAFEALELFREM 279 (662)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~f~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m 279 (662)
..|+.-|.+++++++|..++..|.-. .. .+.+.+...+.+..-..+....++.+
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~a 470 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAA 470 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 35777899999999999999988632 12 23444444555554344444444444
No 412
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.46 E-value=59 Score=31.83 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=34.7
Q ss_pred CChh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 006076 354 RDVV-SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398 (662)
Q Consensus 354 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 398 (662)
+|.. -||..|..-.+.|++++|+.++++..+.|+.--..||..-+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3443 46788888999999999999999999998776666665443
No 413
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.92 E-value=82 Score=22.59 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=10.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh
Q 006076 431 ACMVDLLGRANKLEEAAKIIED 452 (662)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~ 452 (662)
-.+|.+|...|++++|.+++++
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH
Confidence 3444455555555555544444
No 414
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=37.42 E-value=1.1e+03 Score=30.86 Aligned_cols=279 Identities=12% Similarity=0.059 Sum_probs=141.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH-cCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCC-HHHHHHHHHHHHc
Q 006076 225 MTTLIDMYARFGCVMYAGFVFS-QMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN-SVTMVSVLQACAA 302 (662)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~f~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~-~~t~~~ll~a~~~ 302 (662)
+-.|...|+.-+++|....+.. ...++++ ..-|.-....|++..|..-|+++ .+ ..|+ ..+++.++.....
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da~~Cye~~--~q--~~p~~~~~~~g~l~sml~ 1495 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADAAACYERL--IQ--KDPDKEKHHSGVLKSMLA 1495 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHHHHHHHHh--hc--CCCccccchhhHHHhhhc
Confidence 3444456777777666665555 2333322 23344455667777888888776 32 2344 5566666666555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHH-H-HHHHhcCC--hHHHHH
Q 006076 303 LAALEQGKMIHGYILRRGLDSILP-VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL-I-SSYGVHGY--GGKAIQ 377 (662)
Q Consensus 303 ~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l-i-~~~~~~g~--~~~A~~ 377 (662)
.+.++...-..+-..... .+... .++.=+.+--+.++++....... ..+..+|.+. + ..+.+..+ .-.-.+
T Consensus 1496 ~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~ 1571 (2382)
T KOG0890|consen 1496 IQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLD 1571 (2382)
T ss_pred ccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHH
Confidence 566655554333332221 22222 22222334456666666655554 4555666554 2 22222211 111112
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH----------hHHhcCCCCChH------HHHHHHHHHhhcC
Q 006076 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES----------MRKEHMIRPSVE------HYACMVDLLGRAN 441 (662)
Q Consensus 378 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~----------~~~~~~~~~~~~------~~~~li~~~~~~g 441 (662)
+.+.+++.-+.| +.+|+..|.+..+.++.-. .....++.++.. -|..-+..-....
T Consensus 1572 ~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~ 1643 (2382)
T KOG0890|consen 1572 LIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSF 1643 (2382)
T ss_pred HHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhH
Confidence 333333221111 2233333322222221111 111112233221 1111111111111
Q ss_pred CHHHHHHHHHhc----CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHH
Q 006076 442 KLEEAAKIIEDL----RIEP-----GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512 (662)
Q Consensus 442 ~~~~A~~~~~~m----~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (662)
+..+-+--+++. ...| -..+|......++..|.++.|....-.+.+..+ +..+.-.+......|+-..|
T Consensus 1644 ~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1644 RIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNA 1721 (2382)
T ss_pred HHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHH
Confidence 222222112211 1122 356798999999999999999999888887775 57889999999999999999
Q ss_pred HHHHHHHHhCCC
Q 006076 513 KRVKRLLEARGL 524 (662)
Q Consensus 513 ~~~~~~m~~~~~ 524 (662)
..++++..+.+.
T Consensus 1722 l~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1722 LSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHhhc
Confidence 999998886543
No 415
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.78 E-value=78 Score=22.70 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=18.3
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHhHH
Q 006076 390 SPISFVSVLGACSHAGLVEEGKMLFESMRK 419 (662)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 419 (662)
|-.--..++.++...|++++|.++.+.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445566677777777777777766653
No 416
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=35.72 E-value=2.9e+02 Score=23.92 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 006076 355 DVVSWNSLISSYGVHGY-GGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403 (662)
Q Consensus 355 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (662)
+-.+|.+++.+.++..- ---+..+|.-|++.+.+++..-|..++.+|.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 33455555555544333 22344555555555555555555555555544
No 417
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.64 E-value=6.3e+02 Score=27.72 Aligned_cols=45 Identities=18% Similarity=0.022 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-C--ChHHHHHHHHHHHh
Q 006076 474 NVELAERASKRLFELEPTNAGNYVLLADVYAAA-D--MWDEVKRVKRLLEA 521 (662)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~ 521 (662)
+.+.|...+.+..+.. +.....|+.++-.- | .+..|.++++....
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 3455555555444433 33344444444221 1 14566666665554
No 418
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.62 E-value=1.2e+02 Score=31.48 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=64.1
Q ss_pred CCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 006076 42 TTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKL 121 (662)
Q Consensus 42 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 121 (662)
.++..|+...--.++.+++...+..+-++..+.+..|+..+ +.+ ....++. | . -=++.-.|
T Consensus 68 ~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~-----------~~~-g~~~l~~-~--L----GYFSligL 128 (404)
T PF10255_consen 68 NNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVA-----------GEY-GSSPLYK-M--L----GYFSLIGL 128 (404)
T ss_pred hccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhh-----------ccc-ccccHHH-H--h----hHHHHHHH
Confidence 34555665444455566666666666666555444443321 000 0000000 0 0 11344556
Q ss_pred HHHhhcCCChHHHHHHHhcCCC-----------CCcchHHHHHHHHHhcCCccHHHHHHHHHh
Q 006076 122 INVYSHFDSVDDARHVFDKTRR-----------RTIYVWNALFRALTLAGRGEEVLELYRRMN 173 (662)
Q Consensus 122 i~~y~~~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 173 (662)
++.++-.|++..|+++++.+.- -.+.++--+.=+|.-.+++.+|.+.|....
T Consensus 129 lRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 129 LRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888888776542 234556666677888889999999988764
No 419
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.56 E-value=3.3e+02 Score=24.90 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=28.0
Q ss_pred HHhcCChHHHHHHHhhCCC------CChhHHHHHHH-HHHhcCC--hHHHHHHHHHHHHc
Q 006076 335 YARCGKLELGQCVFDHMDK------RDVVSWNSLIS-SYGVHGY--GGKAIQIFKEMIYH 385 (662)
Q Consensus 335 y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 385 (662)
....|++++|.+-++.+.+ +-...|..+.. +|+.++. +.+|..++.-....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3445666666666655542 23345555554 5666553 44666666665554
No 420
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.34 E-value=2.7e+02 Score=23.43 Aligned_cols=59 Identities=10% Similarity=0.214 Sum_probs=38.6
Q ss_pred HhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHhc
Q 006076 80 QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ-DPFLVTKLINVYSHFDSVDDARHVFDK 140 (662)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~ 140 (662)
..-|..+=-.++..-+ .+.++|..|...|+.. -...|......+.+.|++++|.++|+.
T Consensus 65 D~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 65 DERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp -HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3334444333444333 8888999998888644 345677778888888888888888863
No 421
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=35.20 E-value=2.2e+02 Score=22.22 Aligned_cols=38 Identities=5% Similarity=-0.006 Sum_probs=24.4
Q ss_pred hcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 006076 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375 (662)
Q Consensus 337 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 375 (662)
..|+.+.|.+++..++ +..-.|...++++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3466666777777666 6666666667766666655444
No 422
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=34.90 E-value=3.9e+02 Score=25.06 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 006076 291 VTMVSVLQACAALAALEQGKMIHGYILRRG 320 (662)
Q Consensus 291 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 320 (662)
.||--+..-+...|++++|..+|+..+..+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 456666666666666666666666666543
No 423
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.86 E-value=64 Score=30.21 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=38.9
Q ss_pred HHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 436 LLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
+..+.|+.+.|.+++.+. ...| ....|--+...--+.|+++.|.+.+++.++++|+|
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345566777777777665 3333 45667777777777788888888888888777765
No 424
>PRK11619 lytic murein transglycosylase; Provisional
Probab=34.70 E-value=7e+02 Score=27.99 Aligned_cols=79 Identities=10% Similarity=0.038 Sum_probs=48.8
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHH
Q 006076 115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACV 194 (662)
Q Consensus 115 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~ 194 (662)
...-...+..+.+.++++.....+.. +..+...-.....+....|+.++|.+..+.+=..+ .. .......++..+.
T Consensus 99 ~~Lr~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~--~p~~cd~l~~~~~ 174 (644)
T PRK11619 99 RSLQSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KS--LPNACDKLFSVWQ 174 (644)
T ss_pred HHHHHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CC--CChHHHHHHHHHH
Confidence 33444555666677888888873333 33455555667777888888888877777765442 22 2345666666665
Q ss_pred hCC
Q 006076 195 ASS 197 (662)
Q Consensus 195 ~~~ 197 (662)
..+
T Consensus 175 ~~g 177 (644)
T PRK11619 175 QSG 177 (644)
T ss_pred HcC
Confidence 444
No 425
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.47 E-value=4e+02 Score=30.47 Aligned_cols=176 Identities=16% Similarity=0.091 Sum_probs=106.7
Q ss_pred cCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 006076 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345 (662)
Q Consensus 266 ~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 345 (662)
+.++++.+.+.+.- .-.| -++|.-+.+.|-.+-|..+.+. ..+- ......||+++.|.
T Consensus 606 ~k~ydeVl~lI~ns--~LvG--------qaiIaYLqKkgypeiAL~FVkD---------~~tR---F~LaLe~gnle~al 663 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNS--NLVG--------QAIIAYLQKKGYPEIALHFVKD---------ERTR---FELALECGNLEVAL 663 (1202)
T ss_pred hhhhHHHHHHHHhc--Cccc--------HHHHHHHHhcCCcceeeeeecC---------cchh---eeeehhcCCHHHHH
Confidence 45677777766644 3333 1234444555555555544332 1111 22345789999998
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC
Q 006076 346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425 (662)
Q Consensus 346 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (662)
+.-..+. |..+|..|...-.++|+.+-|...|++.+. |..|---|.-.|+.++-.+.-..... ..
T Consensus 664 e~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~----r~ 728 (1202)
T KOG0292|consen 664 EAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI----RN 728 (1202)
T ss_pred HHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh----hh
Confidence 8877665 445799999999999999999999987654 22222234456888776665554432 22
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (662)
|... ....-.-.|+.++=.++++..+..|- .|. .-..+|.-++|.++.++.-.
T Consensus 729 D~~~---~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 729 DATG---QFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred hhHH---HHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 3221 11112235888998899988864332 221 12467888899999888765
No 426
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=33.85 E-value=4.7e+02 Score=25.73 Aligned_cols=56 Identities=16% Similarity=0.104 Sum_probs=36.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076 430 YACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRL 485 (662)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 485 (662)
.+.....|..+|.+.+|.++.++. .+.| +...|-.|+..+...||--.+..-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 444556677777777777777766 3334 5566777777777777766666655554
No 427
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=33.67 E-value=1.2e+02 Score=18.92 Aligned_cols=18 Identities=11% Similarity=-0.149 Sum_probs=8.2
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 006076 464 SLLGSCRIHCNVELAERA 481 (662)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~ 481 (662)
++.-.+-..|+.++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333444445555555555
No 428
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=33.00 E-value=2.9e+02 Score=23.24 Aligned_cols=58 Identities=10% Similarity=0.001 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHH
Q 006076 427 VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG-SLLGSCRIHCNVELAERASKR 484 (662)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~ 484 (662)
..+..++..++.=.|..++|.++++..+-.++-...| -++..|+...+.++...+-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3445556666666666666666666665444433333 355666666555555444443
No 429
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.98 E-value=2.6e+02 Score=29.31 Aligned_cols=105 Identities=12% Similarity=0.130 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-------------ChhHHHHHHHHH-----
Q 006076 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR-------------DVVSWNSLISSY----- 366 (662)
Q Consensus 305 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------------~~~~~~~li~~~----- 366 (662)
.+++-.++++.+.+.| .+| +...-|+.|.+.+++++|..-+++-.+. .+.....++.+.
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 4555556666665554 112 3444577777777777777766644321 122222333322
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHhcCCCHHHHHHHHHH
Q 006076 367 GVHGYGGKAIQIFKEMIYHGVSPSP---ISFVSVLGACSHAGLVEEGKMLFES 416 (662)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~ 416 (662)
.++|-. .+..+++-+...|+.-.. ++|+. -|++.=-++++...|+.
T Consensus 146 vRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~Wqy 194 (480)
T TIGR01503 146 IRHGTP-DARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQY 194 (480)
T ss_pred ccCCCC-cHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHH
Confidence 234433 466667777776655432 33332 34444455666655553
No 430
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.85 E-value=1.7e+02 Score=22.58 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHH
Q 006076 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272 (662)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 272 (662)
..+...+++.|+-. ....-...+...+.+.|.++.+.++.++..+|..+..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt----~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFT----PDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCC----HHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34666666666322 222223334556788899999999999999999998888887765544
No 431
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.48 E-value=1.2e+02 Score=20.33 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=28.1
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006076 90 CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV 124 (662)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 124 (662)
..+.|-+.+++.+++.|.+.|+--++..+..++..
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34668888999999999999988888888777653
No 432
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=32.33 E-value=2.9e+02 Score=23.05 Aligned_cols=20 Identities=15% Similarity=0.018 Sum_probs=13.1
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 006076 499 LADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 499 l~~~~~~~g~~~~A~~~~~~ 518 (662)
-+.++...|+.+||.+-|+.
T Consensus 106 ra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 106 RAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHH
Confidence 34456677888888887764
No 433
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.91 E-value=8.7e+02 Score=28.24 Aligned_cols=25 Identities=36% Similarity=0.691 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH
Q 006076 255 SWSAMIACYARNGMAFEALELFREM 279 (662)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m 279 (662)
-|..|+.-|...|+.++|+++|.+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l 530 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDL 530 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHH
Confidence 3788999999999999999999887
No 434
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.49 E-value=1.5e+02 Score=24.03 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=11.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 006076 258 AMIACYARNGMAFEALELFREM 279 (662)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~m 279 (662)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666555554
No 435
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.80 E-value=82 Score=30.91 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHH
Q 006076 255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295 (662)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ 295 (662)
-||..|....+.|+.++|+.++++. ++.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEA--e~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEA--ERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCchHHHHHHH
Confidence 3678888889999999999999988 77776544444443
No 436
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.63 E-value=2.3e+02 Score=28.26 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=66.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhc-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076 430 YACMVDLLGRANKLEEAAKIIEDL-R---IEP--GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503 (662)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (662)
|.-=.+-|.+..++..|...|.+- . -.| +.+.|+.-..+-.-.|++..++.-..+++.++|.+..+|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333456677888899999888765 1 123 3566776666667778999999999999999999888888877888
Q ss_pred HhcCChHHHHHHHHHH
Q 006076 504 AAADMWDEVKRVKRLL 519 (662)
Q Consensus 504 ~~~g~~~~A~~~~~~m 519 (662)
....++++|....+..
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888877666655543
No 437
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=30.39 E-value=70 Score=31.33 Aligned_cols=76 Identities=8% Similarity=0.057 Sum_probs=54.5
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 006076 423 IRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGS-LLGSCRIHCNVELAERASKRLFELEPTNAGNYVL 498 (662)
Q Consensus 423 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (662)
+..|+..|...+.--.+.|.+.+...++.+. ...| |+..|-. --.-+..+++++.+..++.+.+.++|++|..+..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 4567777777776666777777777777766 3344 5556632 2223467899999999999999999999887664
No 438
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.14 E-value=1.7e+02 Score=22.63 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHH
Q 006076 99 ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165 (662)
Q Consensus 99 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 165 (662)
...++..+.+.|+- +....-..-+...+.+.|.++++.++.++..+|.+...++-..|+..-|
T Consensus 18 ~~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34577777777642 2222223334556789999999999999999999999999888766544
No 439
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.36 E-value=69 Score=27.15 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=26.6
Q ss_pred HHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHH
Q 006076 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193 (662)
Q Consensus 156 ~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~ 193 (662)
.-..|.-.+|-.+|++|+.. |-+||. ++.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~--G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLER--GNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhC--CCCCcc--HHHHHHHh
Confidence 33457778899999999999 899984 67777654
No 440
>PF15469 Sec5: Exocyst complex component Sec5
Probab=29.14 E-value=4.3e+02 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=15.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhHH
Q 006076 396 SVLGACSHAGLVEEGKMLFESMRK 419 (662)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~ 419 (662)
.-|.-|.+.|+++.+...|.....
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 445566667777777777766643
No 441
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.51 E-value=3e+02 Score=28.58 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=28.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-------h-cCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006076 465 LLGSCRIHCNVELAERASKRLF-------E-LEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519 (662)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~-------~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (662)
|+...+-.||+..|+++++.+- . .-+-..++|..++-+|.-.+|+.+|.++|...
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555544331 0 11223455556666666666666666666644
No 442
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=28.38 E-value=4.8e+02 Score=24.08 Aligned_cols=128 Identities=11% Similarity=0.093 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 006076 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS-FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434 (662)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 434 (662)
+...+.++..+...|+++.|-+.|.-+.... ..|..+ |..-+..+.+.+.-....+ -++.|+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~----------------fl~~l~ 103 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELE----------------FLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHH----------------HHHHHH
Confidence 3467788888999999999999999888753 334322 3333333333333333223 344444
Q ss_pred HHHhhcCCHHHHHH------HHHhcC--CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC---CcchHHH
Q 006076 435 DLLGRANKLEEAAK------IIEDLR--IEPG---PKVWGSLLGSCRIHCNVELAERASKRLFEL--EPT---NAGNYVL 498 (662)
Q Consensus 435 ~~~~~~g~~~~A~~------~~~~m~--~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~---~~~~~~~ 498 (662)
..|.......+... +|+.-. ..|. ...|..++..-.+....+.+.++.+++-++ .|+ ++..|..
T Consensus 104 ~~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i 183 (199)
T PF04090_consen 104 SFYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFI 183 (199)
T ss_pred HHHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Confidence 44443322222211 111110 1122 123555555554445566678888888774 443 4455544
Q ss_pred HH
Q 006076 499 LA 500 (662)
Q Consensus 499 l~ 500 (662)
.+
T Consensus 184 ~~ 185 (199)
T PF04090_consen 184 RG 185 (199)
T ss_pred HH
Confidence 33
No 443
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.91 E-value=2.9e+02 Score=21.45 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=41.8
Q ss_pred CHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCC
Q 006076 79 TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR 142 (662)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 142 (662)
....|...++...... .++. ++|+.....|+..|+.+|..+++...-+=..+...++++.|-
T Consensus 9 ~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred hHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3455555554332222 2333 788988899999999999999888766666666677776654
No 444
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.70 E-value=8.3e+02 Score=26.63 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=74.1
Q ss_pred hhccCC-----CchhhHHhhhhccC---CCCcc--c--cCCCChHHHH---HHHHhCCCchHHHHHHh-------cCCC-
Q 006076 21 SIAHLP-----PKPSSVCCCVSLNS---STTPT--S--LSSRNKNELI---QSLCKQGNLRQALDVLS-------IEPN- 77 (662)
Q Consensus 21 li~~y~-----~~~~A~~~f~~~~~---~~~~~--~--~~~~~~~~li---~~~~~~g~~~~A~~~~~-------~~~~- 77 (662)
.+++|. ..++|.+-| .-.. .++.+ . -+.++-++|+ ..+..+|+.+-|.++.+ ....
T Consensus 242 ~isfF~~~hs~sYeqaq~~F-~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp 320 (665)
T KOG2422|consen 242 GISFFKFEHSNSYEQAQRDF-YLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHP 320 (665)
T ss_pred ceeEEEeecchHHHHHHHHH-HHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcc
Confidence 455555 667777777 3322 11111 1 1222234444 56778898887777665 1111
Q ss_pred ----------------CCHhhHHHH---HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhh-cCCChHHHHHH
Q 006076 78 ----------------PTQHTYELL---LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS-HFDSVDDARHV 137 (662)
Q Consensus 78 ----------------p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-~~g~~~~A~~~ 137 (662)
-|..-|.++ +..+.+.|-+..|.+....+.+....-|+...-.+|+.|+ +..++.-.+++
T Consensus 321 ~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~ 400 (665)
T KOG2422|consen 321 NFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIEL 400 (665)
T ss_pred ccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHH
Confidence 133344443 4556778889999998888888776667888888888887 66777777777
Q ss_pred HhcC
Q 006076 138 FDKT 141 (662)
Q Consensus 138 f~~~ 141 (662)
|+..
T Consensus 401 ~~~~ 404 (665)
T KOG2422|consen 401 SNEP 404 (665)
T ss_pred HHHH
Confidence 7654
No 445
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=27.44 E-value=3e+02 Score=21.50 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=11.1
Q ss_pred HHhcCCCHHHHHHHHHHhH
Q 006076 400 ACSHAGLVEEGKMLFESMR 418 (662)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~ 418 (662)
.....|.+++|.+.+++..
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 4445566666666666554
No 446
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=27.28 E-value=3e+02 Score=29.25 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------CcchHH
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT--------NAGNYV 497 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~ 497 (662)
++..|-..+.-|...+++++|.++.+-.+ +...|.++...-..+.+..-++.+|..+.+.+.- -++.-.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 45567777888888999999999888765 5677888887777777777777666655543210 011222
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 006076 498 LLADVYAAADMWDEVKRVKR 517 (662)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~ 517 (662)
-++....-.|++.||.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 34444555678888877664
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.17 E-value=2.2e+02 Score=27.27 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=6.4
Q ss_pred HHHHhcCCccHHHHHH
Q 006076 154 RALTLAGRGEEVLELY 169 (662)
Q Consensus 154 ~~~~~~g~~~~A~~l~ 169 (662)
..|...|++.+|+.-|
T Consensus 18 rl~l~~~~~~~Av~q~ 33 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQF 33 (247)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 3333444444444333
No 448
>PRK13342 recombination factor protein RarA; Reviewed
Probab=27.06 E-value=7.4e+02 Score=25.89 Aligned_cols=36 Identities=19% Similarity=0.105 Sum_probs=23.4
Q ss_pred hHHHHHHHHHh---cCCccHHHHHHHHHhhCCCCCCCChhh
Q 006076 148 VWNALFRALTL---AGRGEEVLELYRRMNGTGTGIRSDRFT 185 (662)
Q Consensus 148 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~~~g~~p~~~t 185 (662)
.+..+++++.+ .++++.|+..+..|.+. |..|....
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~--G~d~~~i~ 267 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEA--GEDPLFIA 267 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 34455555555 46778888888888877 66665433
No 449
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.59 E-value=5.5e+02 Score=24.20 Aligned_cols=91 Identities=23% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 006076 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-----SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433 (662)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 433 (662)
.|.||--|.-+..+.+|.+.|.. ..|+.| +...=..-+......|++++|.+....+...- +..|...+--|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pei-Ld~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEI-LDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHH-HccchhHHHHH
Q ss_pred HHH----HhhcCCHHHHHHHHHh
Q 006076 434 VDL----LGRANKLEEAAKIIED 452 (662)
Q Consensus 434 i~~----~~~~g~~~~A~~~~~~ 452 (662)
... +.|.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
No 450
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=26.53 E-value=26 Score=25.44 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.0
Q ss_pred ceEEEecCCccccccCcccC
Q 006076 638 KEILVRDVNRFHHFRNGVCS 657 (662)
Q Consensus 638 ~~~~~~d~~~~h~f~~g~cs 657 (662)
..|=+.|.+..|+|+||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 35778899999999999865
No 451
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=26.10 E-value=7.8e+02 Score=25.79 Aligned_cols=120 Identities=11% Similarity=0.005 Sum_probs=58.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 006076 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403 (662)
Q Consensus 324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (662)
+..+-..-+.++++.+..+....+-.-....|...-..-+.+....|. .+|......... .|+......+......
T Consensus 160 d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal 235 (410)
T TIGR02270 160 DALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAV 235 (410)
T ss_pred CHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHh
Confidence 344444444444444443333333333334555555555555566666 555555554332 2222222222222222
Q ss_pred CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 006076 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454 (662)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (662)
.|. +++...+..+.++ +. +-...+.++++.|+..-+.-+++.|.
T Consensus 236 ~~~-~~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 236 AGG-PDAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred CCc-hhHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 232 2555555555432 22 44566777777777777777777765
No 452
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=26.08 E-value=3.2e+02 Score=21.33 Aligned_cols=62 Identities=16% Similarity=0.052 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCChH-HHHHHHHHH
Q 006076 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPT--NAGNYVLLADVYAAADMWD-EVKRVKRLL 519 (662)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~A~~~~~~m 519 (662)
|...--.+...+...|+++.|...+-.+++.+|+ +...-..|+.++.-.|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4455556666677777777777777777766544 3445566666666666533 444444444
No 453
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=25.99 E-value=3.5e+02 Score=24.54 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=17.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 466 LGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
+..|.+.|.+++|.+++++..+ +|++
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~ 143 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPES 143 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCc
Confidence 4456777777777777777766 5554
No 454
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=25.43 E-value=4e+02 Score=27.52 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006076 291 VTMVSVLQACAALAALEQGKMIHGYILRR--GLDSILPVVSALVTMYARCGKLELGQCVFDHM 351 (662)
Q Consensus 291 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 351 (662)
.+...+++...-+|+.....++.+.+.+. |-.|...+---+.-+|.-.|++.+|.++|-.+
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566655545555544332 22222222223444555566666666666544
No 455
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.85 E-value=6.9e+02 Score=24.75 Aligned_cols=110 Identities=16% Similarity=0.050 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006076 407 VEEGKMLFESMRKEHMI---RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483 (662)
Q Consensus 407 ~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 483 (662)
.++|.+.|........- ..++.....+.....+.|..++-..+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56788888887653111 345666677777888888877766666666546678888889999998999999899999
Q ss_pred HHHhcC-CCCcchHHHHHHHHHhcCCh--HHHHHHHH
Q 006076 484 RLFELE-PTNAGNYVLLADVYAAADMW--DEVKRVKR 517 (662)
Q Consensus 484 ~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~~ 517 (662)
.++.-+ -.....+..+..+. ..+.. +.+.+.+.
T Consensus 226 ~~l~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLAGLA-SSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTTHHHHHHHHH--CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHHHHh-cCChhhHHHHHHHHH
Confidence 988743 22233444444443 22322 45555444
No 456
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=24.64 E-value=1.8e+02 Score=26.97 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=39.9
Q ss_pred HHHHHHHHHHccC---------CHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 006076 292 TMVSVLQACAALA---------ALEQGKMIHGYILRRGLDS-ILPVVSALVTMYARCGKLELGQCVFDHMD 352 (662)
Q Consensus 292 t~~~ll~a~~~~~---------~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 352 (662)
-|..+..+|++.| +++.-..+++..++.|++. =+++|+++|+--.-.-++++..++|..++
T Consensus 165 E~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 165 EYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred HHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 3455556665544 4555667777777777653 35678888876666667788888777654
No 457
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.62 E-value=1.4e+02 Score=28.06 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=49.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
...++.+.+.+++++++++-|+....|..++..-.++|+++.|.+.+++..+-+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 456889999999999999999999999999999999999999999999887644
No 458
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.36 E-value=4.5e+02 Score=25.95 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006076 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279 (662)
Q Consensus 227 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (662)
.++..+.+..++......+..+. .+..-...+..+...|++..|+++..+.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~ 153 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEEC 153 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44555556566655555555552 3444556677788899999999988877
No 459
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=24.33 E-value=6.6e+02 Score=24.32 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=25.3
Q ss_pred hHHHHHHHHhCCCchHHHHHHh--cCCCCCHhhHHHHHHH
Q 006076 52 KNELIQSLCKQGNLRQALDVLS--IEPNPTQHTYELLLLS 89 (662)
Q Consensus 52 ~~~li~~~~~~g~~~~A~~~~~--~~~~p~~~~~~~ll~~ 89 (662)
.+.++..+.+.+...+|+.+.+ ...+.=.++...+|..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~ 124 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHT 124 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 3568999999999999998877 3333334444445443
No 460
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=24.31 E-value=2.1e+02 Score=27.74 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 464 SLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.+=+++.+.++++.|....++.+.++|.++.-..--+-+|.+.|...-|.+-++...+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3445677888999999999999999999887777788899999998888888776443
No 461
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=24.27 E-value=3.9e+02 Score=21.63 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=13.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 006076 258 AMIACYARNGMAFEALELFREM 279 (662)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~m 279 (662)
.++..|...++.++|.+-+.++
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHh
Confidence 3555666666666666666665
No 462
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.18 E-value=4.7e+02 Score=28.88 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCCccchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCH
Q 006076 188 YVLKACVASSCGFSLLKHGKEIHASVLRHG--YNGIVHIMTTLIDMYARFGCV 238 (662)
Q Consensus 188 ~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~ 238 (662)
+++.+|...++ +..+.+++..++... -..-...+|..|+-..+.|.+
T Consensus 33 sl~eacv~n~~----~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGD----FLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcch----HHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56666666666 666666666555432 111123444445555555543
No 463
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=23.92 E-value=2.6e+02 Score=21.85 Aligned_cols=59 Identities=8% Similarity=0.036 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCCh
Q 006076 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269 (662)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 269 (662)
..+...+++.|+-.+. ..-...+...+.+.+.++++.++.++..+|..+..++-..|..
T Consensus 23 ~~v~~~L~~~gvlt~~----~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 23 DELLIHLLQKDILTDS----MAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHcCCCCHH----HHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 3456666666643222 2222333446778889999999888888998888888665543
No 464
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.81 E-value=1.2e+03 Score=27.18 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=58.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHhcCCCCC--c-----chHHHHHHHHHhcCCc--cHHHHHHHHHhhCCC--CC-------
Q 006076 118 VTKLINVYSHFDSVDDARHVFDKTRRRT--I-----YVWNALFRALTLAGRG--EEVLELYRRMNGTGT--GI------- 179 (662)
Q Consensus 118 ~~~li~~y~~~g~~~~A~~~f~~~~~~~--~-----~~~~~li~~~~~~g~~--~~A~~l~~~m~~~~~--g~------- 179 (662)
|..|+..|...|..++|++++.+....+ . ..+--++.-+.+.+.. +-.++.-.+.....+ |+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6677777888888888888776654421 1 1222233333333333 333333333322210 00
Q ss_pred --CCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006076 180 --RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235 (662)
Q Consensus 180 --~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 235 (662)
......-.-++..+ .... .+.....++.++...-.++....+.++..|++.
T Consensus 587 ~~~~~sis~~~Vl~~l-~~~~----~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYL-KSKE----PKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred hhhhccCCHHHHHHHh-hhhC----cchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 00111112233332 2233 666777778777766566777788888888753
No 465
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.60 E-value=4.7e+02 Score=23.79 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=20.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHH
Q 006076 433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466 (662)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 466 (662)
.+-.|.+.|.+++|.+++++.--.|+......-+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL 150 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKL 150 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHH
Confidence 3456777788888888877763255554444333
No 466
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=23.45 E-value=2.8e+02 Score=21.69 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcc
Q 006076 99 ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE 163 (662)
Q Consensus 99 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 163 (662)
...++..+.+.|+-.+ .. .-...+..-+.+.+.++++.++.++..+|..+..++-..++..
T Consensus 22 ~~~v~~~L~~~gvlt~-~~---~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~ 82 (90)
T cd08332 22 LDELLIHLLQKDILTD-SM---AESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEH 82 (90)
T ss_pred HHHHHHHHHHcCCCCH-HH---HHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHH
Confidence 3357777777774322 22 2222334467899999999999999999999999997655543
No 467
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.41 E-value=1.1e+03 Score=26.83 Aligned_cols=100 Identities=9% Similarity=0.014 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 006076 270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349 (662)
Q Consensus 270 ~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 349 (662)
++....+.... ...|+..+......++..+ .|++..+..+++.++..|- ...+.. ....++.
T Consensus 181 eeI~~~L~~Il-~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~e-------------~V~~lLG 242 (709)
T PRK08691 181 QQVADHLAHVL-DSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAEN-------------DVRQMIG 242 (709)
T ss_pred HHHHHHHHHHH-HHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCHH-------------HHHHHHc
Confidence 33444444443 4556666666666665544 4778888887776655431 011111 1111111
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 006076 350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP 391 (662)
Q Consensus 350 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 391 (662)
..+......|+.++.. ++...++.++++|...|+.+..
T Consensus 243 ---~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 243 ---AVDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred ---ccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHH
Confidence 1222334445555544 7788888888888888876543
No 468
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.97 E-value=3.7e+02 Score=20.92 Aligned_cols=42 Identities=7% Similarity=-0.084 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 006076 311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352 (662)
Q Consensus 311 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 352 (662)
++|+.....|+..|+.+|..+++...-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777777888888888888888887766666666666666664
No 469
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=22.91 E-value=7.8e+02 Score=24.67 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh---cCCHHHHHH
Q 006076 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR---ANKLEEAAK 448 (662)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~ 448 (662)
.+.-+.++++.++.+ +-+.......+..+.+..+.++..+-++.+...+ +-+...|...++.... .-.+++..+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 556778888888862 2344667778888888889999889999988653 3467788887776654 234566666
Q ss_pred HHHhc-------CCCC----------CHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076 449 IIEDL-------RIEP----------GPKVWGS---LLGSCRIHCNVELAERASKRLFELE 489 (662)
Q Consensus 449 ~~~~m-------~~~p----------~~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (662)
+|.+. .... +...... +..-....|..+.|..+++-+++++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 66543 1111 1111122 2233467788889988888888865
No 470
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=22.88 E-value=7e+02 Score=24.12 Aligned_cols=191 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhC----CCcCCHHHHHHHHHHHHccCCHH-
Q 006076 233 ARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH----DLCPNSVTMVSVLQACAALAALE- 307 (662)
Q Consensus 233 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~p~~~t~~~ll~a~~~~~~~~- 307 (662)
.+.+++++|.+++.. =...+.++|+...|-++-.-| .+. +.++|......++..+.....-+
T Consensus 1 v~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~ll--iev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLL--IEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp HHTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHH--HHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred CccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHH--HHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Q ss_pred HHHHHHHHHHHhCCC------CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 006076 308 QGKMIHGYILRRGLD------SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE 381 (662)
Q Consensus 308 ~a~~~~~~~~~~g~~------~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (662)
.-.++...+++-. + -|+.....+...|.+.|++.+|+.-|-.-.+++...+..++.-....|...++
T Consensus 68 ~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~------ 140 (260)
T PF04190_consen 68 ERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA------ 140 (260)
T ss_dssp THHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H------
T ss_pred hHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch------
Q ss_pred HHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHh--------------cCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006076 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE--------------HMIRPSVEHYACMVDLLGRANKLEEAA 447 (662)
Q Consensus 382 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~~~~~~li~~~~~~g~~~~A~ 447 (662)
..-....+--|.-.+++..|...++...+. ....+..-.+..++-.-+..+..+.-.
T Consensus 141 ---------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~ 211 (260)
T PF04190_consen 141 ---------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFK 211 (260)
T ss_dssp ---------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHH
T ss_pred ---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHH
Q ss_pred HHHHh
Q 006076 448 KIIED 452 (662)
Q Consensus 448 ~~~~~ 452 (662)
.+.+.
T Consensus 212 ~L~~~ 216 (260)
T PF04190_consen 212 KLCEK 216 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
No 471
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.87 E-value=3.3e+02 Score=24.26 Aligned_cols=61 Identities=15% Similarity=0.060 Sum_probs=38.3
Q ss_pred HHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 006076 382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444 (662)
Q Consensus 382 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 444 (662)
+...|++++..-. .++..+......-.|.++++.+.+. +...+..|...-++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 4456776665443 4444444455666788888888643 44556666666677788888764
No 472
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=22.85 E-value=1e+03 Score=26.12 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 006076 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349 (662)
Q Consensus 289 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 349 (662)
+.....-++..|.+.|..+.+..+.+.+-..-.. ..-|..-+..+.++|+......+-+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444555666666666666666666655433221 1234445555666666655544443
No 473
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.69 E-value=4.2e+02 Score=22.92 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=30.6
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 006076 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL 443 (662)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 443 (662)
..+.+.|++++..= ..++..+.+.+..-.|.++++.+.+. +..-+..|-..-++.+...|-+
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 34445555554422 23444555555556666666666542 2233344444445566666643
No 474
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.73 E-value=1.4e+03 Score=27.36 Aligned_cols=110 Identities=11% Similarity=-0.001 Sum_probs=67.5
Q ss_pred HHHHHhcCChHHHHHHHhhCCC-------------------C-----------C--hhHHHHHHHHHHhcCChHHHHHHH
Q 006076 332 VTMYARCGKLELGQCVFDHMDK-------------------R-----------D--VVSWNSLISSYGVHGYGGKAIQIF 379 (662)
Q Consensus 332 i~~y~~~g~~~~A~~~~~~m~~-------------------~-----------~--~~~~~~li~~~~~~g~~~~A~~~~ 379 (662)
..+|..+|...+|...|.+... + . ..-|-..+..+-+++..+.+.++-
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA 1006 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLA 1006 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3347778888888888876531 1 1 122556677788888888888887
Q ss_pred HHHHHcCCCCCH----hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006076 380 KEMIYHGVSPSP----ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445 (662)
Q Consensus 380 ~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 445 (662)
....+. ++|+. .+++.+.+-....|.+-+|...+-... ...........++..+..+|.++.
T Consensus 1007 ~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np---dserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1007 VKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP---DSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhccchHH
Confidence 777664 34432 356666666667777766655442211 011123456677777788876544
No 475
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=21.71 E-value=4.1e+02 Score=28.82 Aligned_cols=133 Identities=13% Similarity=0.022 Sum_probs=84.6
Q ss_pred CCCHhHHHHHHHHHhcCC--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH-hhcCCHHHHHHHHHhc-CCCC--CHHH
Q 006076 388 SPSPISFVSVLGACSHAG--LVEEGKMLFESMRKEHMIRPSVEHYACMVDLL-GRANKLEEAAKIIEDL-RIEP--GPKV 461 (662)
Q Consensus 388 ~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m-~~~p--~~~~ 461 (662)
.|+..|..+++.-...-- .-+-|-.++..|.+ .+.|--...| +...| .-.|+...|...+... ...| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 466666666655444322 23445556666632 2233222222 22333 3457888888777655 2233 2233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
...|.+.....|-...|-.++.+.+.+....|-++..++++|....+++.|++.++...++.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 34455666666777788899999888877778899999999999999999999998876644
No 476
>PRK13342 recombination factor protein RarA; Reviewed
Probab=20.87 E-value=9.7e+02 Score=25.02 Aligned_cols=48 Identities=23% Similarity=0.173 Sum_probs=32.7
Q ss_pred HHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCC
Q 006076 358 SWNSLISSYGV---HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405 (662)
Q Consensus 358 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 405 (662)
.+..+++++.+ .++.+.|+..+.+|.+.|..|....-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455555554 4789999999999999998887655555554544433
No 477
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=20.52 E-value=1e+03 Score=25.08 Aligned_cols=305 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCchHHHHHHhcCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCC---
Q 006076 53 NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD--- 129 (662)
Q Consensus 53 ~~li~~~~~~g~~~~A~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--- 129 (662)
|-++.-|+..|+..+|.+..+ ....+.+.-..+-++....+.-..+.-+.-.+.+.+...+...-+.+...+.|.+
T Consensus 218 n~~l~eyv~~getrea~rciR-~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sl 296 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIR-ELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSL 296 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHH-HhCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhcccc
Q ss_pred -----ChHHHHHHHhcCCCCCcc---------------------------hHHHHHHHHHhcCCccHHHHHHHHHhhCCC
Q 006076 130 -----SVDDARHVFDKTRRRTIY---------------------------VWNALFRALTLAGRGEEVLELYRRMNGTGT 177 (662)
Q Consensus 130 -----~~~~A~~~f~~~~~~~~~---------------------------~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 177 (662)
+...|...|+.+..+++. .-..+|+-|...|+..+..+.++.+-..
T Consensus 297 ddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DLn~~-- 374 (645)
T KOG0403|consen 297 DDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDLNLP-- 374 (645)
T ss_pred ccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHcCCc--
Q ss_pred CCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH-------------HHHHH
Q 006076 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM-------------YAGFV 244 (662)
Q Consensus 178 g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~-------------~A~~~ 244 (662)
...|-...+..-| +.-+... -.+.-.++-.-+-..+-+...+-+...-.+-...+.. -|+.+
T Consensus 375 E~~~~f~k~lITL-AldrK~~----ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAV 449 (645)
T KOG0403|consen 375 EYNPGFLKLLITL-ALDRKNS----EKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAV 449 (645)
T ss_pred cccchHHHHHHHH-Hhccchh----HHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHH
Q ss_pred HHcCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 006076 245 FSQMAVK-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323 (662)
Q Consensus 245 f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 323 (662)
.+.+..| +...+..-+..-.+....-+--+.+-.| +..| -.+++.....|--......-+.+..
T Consensus 450 iDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsa--r~aG--------eRllr~WGgGG~g~sVed~kdkI~~----- 514 (645)
T KOG0403|consen 450 IDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSA--RHAG--------ERLLRVWGGGGGGWSVEDAKDKIDM----- 514 (645)
T ss_pred hhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHH--hhcc--------cchhheecCCCCcchHHHHHHHHHH-----
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006076 324 ILPVVSALVTMYARCGKLELGQCVFDHMDKR---DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387 (662)
Q Consensus 324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 387 (662)
|+.-|.-.|++.+|.+.++++.-| ..+.+.+++.+.-+.|+-...+.++++.-..|+
T Consensus 515 -------LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 515 -------LLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred -------HHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
No 478
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=20.44 E-value=6.7e+02 Score=23.01 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCCC------------------CHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006076 224 IMTTLIDMYARFGCVMYAGFVFSQMAVK------------------NVVSWSAMIACYARNGMAFEALELFRE 278 (662)
Q Consensus 224 ~~~~li~~y~~~g~~~~A~~~f~~~~~~------------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (662)
+.-+++..|-+.-++.+.+++++.|.+- --..-|.-...+.+.|..+.|+.++++
T Consensus 134 iGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 134 IGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3446677788888888888888766321 112345556667778888888777764
No 479
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=20.14 E-value=5e+02 Score=28.68 Aligned_cols=47 Identities=17% Similarity=0.050 Sum_probs=26.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHhcCCCH
Q 006076 361 SLISSYGVHGYGGKAIQIFKEMIYHG--VSPSPISFVSVLGACSHAGLV 407 (662)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~ 407 (662)
+|..+|..+|++-.+.++++.+.... -+.=...|+..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56666777777777766666665431 111123455556666666654
No 480
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.07 E-value=30 Score=33.78 Aligned_cols=17 Identities=53% Similarity=1.087 Sum_probs=13.8
Q ss_pred CCccccccCccc---CCCCC
Q 006076 645 VNRFHHFRNGVC---SCGDY 661 (662)
Q Consensus 645 ~~~~h~f~~g~c---sc~~~ 661 (662)
.+.||.|.+|+| .|.|+
T Consensus 362 NrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 362 NRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred hhhhhhhhccccceeeehhh
Confidence 477999999999 56664
Done!