Query 006076
Match_columns 662
No_of_seqs 816 out of 4672
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 15:19:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.9E-42 3.4E-46 377.0 39.3 475 27-522 68-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.1E-37 1.4E-41 340.0 24.6 471 18-505 87-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.5E-27 5.1E-32 253.5 22.2 184 254-440 27-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-24 6.3E-29 225.0 42.3 372 88-508 7-388 (388)
5 4g26_A Pentatricopeptide repea 99.9 3.1E-27 1E-31 251.0 19.6 211 164-404 8-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 5.9E-24 2E-28 221.2 42.3 351 153-521 6-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 6.6E-22 2.3E-26 213.6 34.7 425 82-522 8-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.9E-21 6.5E-26 210.0 33.2 435 52-499 9-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 6.5E-21 2.2E-25 202.2 35.6 335 145-518 25-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.6E-20 8.9E-25 202.3 35.2 421 52-522 28-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 9.7E-20 3.3E-24 193.1 32.9 297 219-522 23-358 (450)
12 3ieg_A DNAJ homolog subfamily 99.8 5.4E-17 1.8E-21 165.9 35.7 303 185-522 5-335 (359)
13 3ieg_A DNAJ homolog subfamily 99.8 1.5E-16 5.2E-21 162.5 36.4 320 147-505 4-352 (359)
14 3fp2_A TPR repeat-containing p 99.8 7.5E-18 2.6E-22 182.9 27.5 359 146-523 25-408 (537)
15 3hym_B Cell division cycle pro 99.8 1E-16 3.5E-21 161.9 29.4 287 218-509 18-321 (330)
16 1b89_A Protein (clathrin heavy 99.8 2.2E-17 7.5E-22 167.2 22.8 321 127-490 15-343 (449)
17 2xm6_A Protein corresponding t 99.8 4.3E-15 1.5E-19 159.2 39.4 365 114-505 38-452 (490)
18 2ooe_A Cleavage stimulation fa 99.8 7.9E-15 2.7E-19 158.8 41.5 394 114-521 12-491 (530)
19 3hym_B Cell division cycle pro 99.8 4.1E-16 1.4E-20 157.4 29.1 264 251-521 20-298 (330)
20 1fch_A Peroxisomal targeting s 99.7 2E-16 7E-21 162.5 25.9 279 233-517 36-354 (368)
21 1b89_A Protein (clathrin heavy 99.7 6.2E-17 2.1E-21 163.9 20.8 289 19-349 10-306 (449)
22 1xi4_A Clathrin heavy chain; a 99.7 1.1E-13 3.6E-18 155.8 45.7 436 17-517 875-1340(1630)
23 2ooe_A Cleavage stimulation fa 99.7 4.3E-14 1.5E-18 153.0 41.4 403 79-491 12-495 (530)
24 4eqf_A PEX5-related protein; a 99.7 3.8E-16 1.3E-20 160.5 22.2 261 252-518 64-352 (365)
25 3mkr_A Coatomer subunit epsilo 99.7 8.3E-15 2.8E-19 145.0 30.9 270 231-516 8-288 (291)
26 1xi4_A Clathrin heavy chain; a 99.7 1.2E-13 4E-18 155.4 43.0 383 79-515 984-1377(1630)
27 1fch_A Peroxisomal targeting s 99.7 1.5E-15 5.2E-20 156.0 26.4 295 159-486 38-357 (368)
28 2xm6_A Protein corresponding t 99.7 1.2E-13 4.2E-18 147.9 42.1 352 143-523 36-433 (490)
29 4eqf_A PEX5-related protein; a 99.7 6.7E-16 2.3E-20 158.7 21.6 231 289-522 64-310 (365)
30 3cv0_A Peroxisome targeting si 99.7 3E-15 1E-19 150.8 24.4 256 256-518 24-311 (327)
31 4g1t_A Interferon-induced prot 99.7 8.1E-14 2.8E-18 148.4 33.7 366 146-533 51-470 (472)
32 3mkr_A Coatomer subunit epsilo 99.7 8.1E-15 2.8E-19 145.1 24.0 246 260-522 6-264 (291)
33 3spa_A Mtrpol, DNA-directed RN 99.7 6.6E-17 2.3E-21 176.1 8.4 132 321-453 123-262 (1134)
34 3spa_A Mtrpol, DNA-directed RN 99.6 1.6E-16 5.5E-21 173.1 9.2 151 218-370 123-286 (1134)
35 3cv0_A Peroxisome targeting si 99.6 1.9E-13 6.6E-18 137.4 27.3 224 184-418 22-267 (327)
36 4g1t_A Interferon-induced prot 99.6 4.1E-13 1.4E-17 143.0 30.2 367 115-500 51-471 (472)
37 3uq3_A Heat shock protein STI1 99.6 9.4E-14 3.2E-18 134.5 22.5 214 295-521 10-235 (258)
38 2pl2_A Hypothetical conserved 99.6 1.3E-13 4.5E-18 130.1 20.1 195 322-520 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.6 2.1E-13 7.3E-18 131.9 21.1 233 254-501 6-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 4E-13 1.4E-17 131.5 21.5 240 266-516 18-269 (275)
41 3u4t_A TPR repeat-containing p 99.5 1.1E-12 3.7E-17 128.3 21.5 241 226-506 7-268 (272)
42 3e4b_A ALGK; tetratricopeptide 99.5 4.2E-12 1.4E-16 134.0 25.8 374 86-520 9-419 (452)
43 2ho1_A Type 4 fimbrial biogene 99.5 5.1E-12 1.8E-16 121.9 23.3 197 325-523 37-239 (252)
44 2ho1_A Type 4 fimbrial biogene 99.5 1E-11 3.5E-16 119.8 24.6 207 253-496 37-246 (252)
45 2vq2_A PILW, putative fimbrial 99.5 8.4E-12 2.9E-16 117.8 23.3 195 325-521 8-210 (225)
46 2q7f_A YRRB protein; TPR, prot 99.5 2E-12 6.9E-17 123.9 18.5 169 329-500 61-234 (243)
47 2q7f_A YRRB protein; TPR, prot 99.5 2.3E-12 7.8E-17 123.5 18.7 197 324-523 22-223 (243)
48 2vq2_A PILW, putative fimbrial 99.5 2.2E-11 7.6E-16 114.9 25.2 199 298-499 16-222 (225)
49 2h6f_A Protein farnesyltransfe 99.4 1.4E-11 4.7E-16 126.1 24.6 243 253-504 97-364 (382)
50 1ouv_A Conserved hypothetical 99.4 5.9E-11 2E-15 116.1 27.6 228 252-523 5-252 (273)
51 1ouv_A Conserved hypothetical 99.4 5.3E-11 1.8E-15 116.4 27.2 231 220-492 4-255 (273)
52 2pl2_A Hypothetical conserved 99.4 1.3E-11 4.5E-16 116.3 21.6 192 254-453 6-211 (217)
53 2h6f_A Protein farnesyltransfe 99.4 1.1E-11 3.8E-16 126.8 20.4 226 290-521 97-347 (382)
54 4a1s_A PINS, partner of inscut 99.4 4.4E-12 1.5E-16 132.2 17.8 196 326-521 127-371 (411)
55 3sf4_A G-protein-signaling mod 99.4 1.4E-11 4.6E-16 128.0 21.1 195 327-521 89-335 (406)
56 3u4t_A TPR repeat-containing p 99.4 2.8E-11 9.6E-16 118.2 22.1 226 294-523 7-251 (272)
57 3vtx_A MAMA; tetratricopeptide 99.4 4.4E-11 1.5E-15 109.3 21.9 164 355-522 4-170 (184)
58 4e6h_A MRNA 3'-END-processing 99.4 1.9E-09 6.6E-14 117.7 38.3 419 76-503 62-584 (679)
59 4abn_A Tetratricopeptide repea 99.4 3.9E-12 1.3E-16 135.1 16.6 208 307-519 85-318 (474)
60 3e4b_A ALGK; tetratricopeptide 99.4 2.4E-11 8.3E-16 128.1 22.4 308 192-524 12-353 (452)
61 3ro2_A PINS homolog, G-protein 99.4 1.4E-11 4.7E-16 124.0 19.5 229 293-521 46-331 (338)
62 3sf4_A G-protein-signaling mod 99.4 1.5E-11 5.1E-16 127.7 19.6 154 357-510 188-364 (406)
63 1xnf_A Lipoprotein NLPI; TPR, 99.4 2E-11 6.9E-16 119.3 19.4 217 302-523 17-245 (275)
64 4a1s_A PINS, partner of inscut 99.3 2.2E-11 7.5E-16 126.9 16.7 265 227-491 53-375 (411)
65 2ond_A Cleavage stimulation fa 99.3 1.4E-09 4.7E-14 108.5 29.0 219 270-494 33-276 (308)
66 3vtx_A MAMA; tetratricopeptide 99.3 9.3E-11 3.2E-15 107.1 18.4 166 324-492 4-174 (184)
67 3ro2_A PINS homolog, G-protein 99.3 9.2E-11 3.1E-15 117.9 19.9 199 293-491 86-335 (338)
68 3nf1_A KLC 1, kinesin light ch 99.3 9.7E-12 3.3E-16 123.9 12.1 239 253-521 27-306 (311)
69 4gyw_A UDP-N-acetylglucosamine 99.3 6.5E-11 2.2E-15 130.9 18.8 162 356-521 9-173 (723)
70 4e6h_A MRNA 3'-END-processing 99.3 2.6E-08 8.9E-13 108.8 37.8 422 99-524 51-572 (679)
71 3ulq_A Response regulator aspa 99.3 1.6E-10 5.6E-15 119.1 19.3 221 300-521 113-367 (383)
72 3as5_A MAMA; tetratricopeptide 99.2 3.6E-10 1.2E-14 102.7 18.7 160 359-521 11-172 (186)
73 2ond_A Cleavage stimulation fa 99.2 7.5E-10 2.6E-14 110.4 22.3 212 307-523 33-271 (308)
74 3ulq_A Response regulator aspa 99.2 8.8E-10 3E-14 113.6 23.3 292 194-489 23-369 (383)
75 3nf1_A KLC 1, kinesin light ch 99.2 4.4E-11 1.5E-15 119.1 12.2 242 219-491 24-310 (311)
76 1hz4_A MALT regulatory protein 99.2 1.4E-08 4.9E-13 104.0 29.5 258 262-521 23-321 (373)
77 3as5_A MAMA; tetratricopeptide 99.2 1.9E-09 6.4E-14 97.9 20.2 167 325-494 8-179 (186)
78 3q15_A PSP28, response regulat 99.2 1.2E-09 4.1E-14 112.4 20.7 222 299-521 110-364 (378)
79 4i17_A Hypothetical protein; T 99.2 1.8E-09 6.2E-14 102.2 20.4 204 288-503 5-224 (228)
80 4i17_A Hypothetical protein; T 99.1 2E-09 6.8E-14 102.0 18.2 188 324-522 6-209 (228)
81 4abn_A Tetratricopeptide repea 99.1 2.7E-09 9.4E-14 113.1 19.2 207 269-483 84-316 (474)
82 3q15_A PSP28, response regulat 99.1 1E-07 3.6E-12 97.8 29.9 290 194-488 23-365 (378)
83 3edt_B KLC 2, kinesin light ch 99.0 4.1E-09 1.4E-13 102.9 15.9 221 301-521 12-280 (283)
84 4gyw_A UDP-N-acetylglucosamine 99.0 2.6E-09 8.7E-14 118.2 15.2 162 324-489 8-175 (723)
85 1hz4_A MALT regulatory protein 99.0 2E-07 7E-12 95.3 28.5 224 154-383 22-280 (373)
86 3qky_A Outer membrane assembly 99.0 4.3E-08 1.5E-12 94.9 20.1 182 324-522 14-224 (261)
87 1qqe_A Vesicular transport pro 98.9 8.4E-09 2.9E-13 101.8 14.7 201 305-520 32-267 (292)
88 2fo7_A Synthetic consensus TPR 98.9 3.9E-08 1.3E-12 83.6 15.8 129 358-521 3-131 (136)
89 4ga2_A E3 SUMO-protein ligase 98.9 3E-09 1E-13 93.4 8.5 141 364-508 5-149 (150)
90 3mv2_B Coatomer subunit epsilo 98.9 2.1E-07 7.3E-12 90.3 22.1 162 355-521 99-281 (310)
91 2fo7_A Synthetic consensus TPR 98.9 6.8E-08 2.3E-12 82.1 16.9 124 327-453 3-129 (136)
92 1qqe_A Vesicular transport pro 98.9 2.7E-08 9.3E-13 98.1 16.3 167 326-492 78-273 (292)
93 3qky_A Outer membrane assembly 98.9 2.8E-08 9.7E-13 96.2 15.9 201 289-510 14-249 (261)
94 3edt_B KLC 2, kinesin light ch 98.9 3.4E-08 1.2E-12 96.2 16.3 199 290-488 43-281 (283)
95 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.6E-07 8.9E-12 87.1 20.6 181 325-524 4-215 (225)
96 3mv2_B Coatomer subunit epsilo 98.8 4.8E-07 1.6E-11 87.8 22.1 239 233-495 24-289 (310)
97 2pzi_A Probable serine/threoni 98.8 1.5E-08 5.2E-13 112.4 12.8 168 336-508 402-583 (681)
98 3qou_A Protein YBBN; thioredox 98.8 1.4E-07 4.7E-12 92.7 17.2 172 344-520 105-282 (287)
99 3rjv_A Putative SEL1 repeat pr 98.8 8.2E-07 2.8E-11 82.8 20.5 162 354-524 16-199 (212)
100 2pzi_A Probable serine/threoni 98.7 4.1E-07 1.4E-11 100.9 20.4 190 301-496 402-610 (681)
101 2uy1_A Cleavage stimulation fa 98.7 1.1E-05 3.8E-10 85.3 30.2 342 129-486 28-411 (493)
102 2ifu_A Gamma-SNAP; membrane fu 98.7 5.6E-07 1.9E-11 89.3 18.3 220 266-515 4-254 (307)
103 2vsy_A XCC0866; transferase, g 98.7 1.8E-07 6.2E-12 101.7 16.0 159 338-500 2-169 (568)
104 3gyz_A Chaperone protein IPGC; 98.7 8.8E-08 3E-12 83.7 10.6 100 423-522 31-133 (151)
105 2vsy_A XCC0866; transferase, g 98.7 3.7E-07 1.3E-11 99.2 18.1 147 303-453 2-154 (568)
106 3urz_A Uncharacterized protein 98.7 5.4E-07 1.8E-11 83.7 16.0 128 360-492 58-190 (208)
107 2r5s_A Uncharacterized protein 98.7 2.7E-07 9.3E-12 83.1 13.3 75 446-520 93-171 (176)
108 4ga2_A E3 SUMO-protein ligase 98.7 2.7E-08 9.1E-13 87.2 6.3 120 399-521 5-128 (150)
109 2r5s_A Uncharacterized protein 98.6 4.2E-07 1.4E-11 81.9 14.2 156 328-487 9-172 (176)
110 2vgx_A Chaperone SYCD; alterna 98.6 1.5E-07 5.1E-12 82.1 10.5 97 426-522 20-118 (148)
111 2yhc_A BAMD, UPF0169 lipoprote 98.6 8E-07 2.7E-11 83.7 16.3 185 289-494 3-219 (225)
112 4gco_A Protein STI-1; structur 98.6 5.1E-07 1.7E-11 76.2 13.1 109 392-502 14-124 (126)
113 3dra_A Protein farnesyltransfe 98.6 1.4E-05 4.9E-10 78.2 24.2 149 370-521 124-286 (306)
114 3urz_A Uncharacterized protein 98.6 6.5E-07 2.2E-11 83.1 13.8 156 362-522 10-186 (208)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.7E-06 5.8E-11 80.4 16.7 125 394-523 9-151 (213)
116 1na0_A Designed protein CTPR3; 98.6 1.7E-06 5.8E-11 72.1 14.6 114 392-507 10-125 (125)
117 3u3w_A Transcriptional activat 98.5 7.4E-06 2.5E-10 80.5 21.4 160 362-521 81-265 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.5 3.1E-06 1.1E-10 78.6 17.7 145 328-492 9-154 (213)
119 1a17_A Serine/threonine protei 98.5 1.8E-06 6.2E-11 76.3 15.2 127 393-521 15-145 (166)
120 3qou_A Protein YBBN; thioredox 98.5 3.8E-06 1.3E-10 82.3 18.8 161 290-452 117-280 (287)
121 2xcb_A PCRH, regulatory protei 98.5 1.1E-06 3.8E-11 75.9 13.0 96 426-521 17-114 (142)
122 4gco_A Protein STI-1; structur 98.5 1.1E-06 3.8E-11 74.1 12.2 100 423-522 8-110 (126)
123 3rjv_A Putative SEL1 repeat pr 98.5 5.7E-06 2E-10 76.9 18.3 173 309-491 5-200 (212)
124 2qfc_A PLCR protein; TPR, HTH, 98.5 3.4E-06 1.1E-10 83.0 17.4 163 358-520 77-264 (293)
125 2vyi_A SGTA protein; chaperone 98.5 2.1E-06 7.1E-11 72.2 13.7 116 392-509 13-130 (131)
126 2lni_A Stress-induced-phosphop 98.5 1.9E-06 6.6E-11 72.8 13.0 115 392-508 17-133 (133)
127 2c2l_A CHIP, carboxy terminus 98.5 4.5E-07 1.5E-11 88.7 9.9 190 325-522 4-199 (281)
128 3u3w_A Transcriptional activat 98.4 4E-05 1.4E-09 75.2 23.8 158 331-488 81-266 (293)
129 2ifu_A Gamma-SNAP; membrane fu 98.4 1.2E-06 4E-11 87.0 12.7 196 302-520 3-222 (307)
130 3dra_A Protein farnesyltransfe 98.4 0.00018 6E-09 70.4 27.2 226 267-500 47-300 (306)
131 1p5q_A FKBP52, FK506-binding p 98.4 1.7E-06 5.9E-11 86.9 12.8 160 339-520 127-292 (336)
132 2e2e_A Formate-dependent nitri 98.4 1.7E-06 5.7E-11 77.9 11.2 118 403-522 22-144 (177)
133 3upv_A Heat shock protein STI1 98.4 3E-06 1E-10 71.3 11.5 95 427-521 4-100 (126)
134 2uy1_A Cleavage stimulation fa 98.3 0.00034 1.1E-08 73.9 29.2 342 63-419 28-412 (493)
135 2qfc_A PLCR protein; TPR, HTH, 98.3 2.4E-05 8.1E-10 76.9 18.5 162 327-488 77-266 (293)
136 2vgx_A Chaperone SYCD; alterna 98.3 2.2E-06 7.5E-11 74.6 9.8 103 392-496 22-126 (148)
137 3gyz_A Chaperone protein IPGC; 98.3 6.6E-06 2.3E-10 71.6 12.8 104 387-492 31-137 (151)
138 4f3v_A ESX-1 secretion system 98.3 2.8E-06 9.7E-11 81.3 11.0 135 360-499 106-247 (282)
139 2kck_A TPR repeat; tetratricop 98.3 4E-06 1.4E-10 68.3 10.6 98 426-523 5-107 (112)
140 2e2e_A Formate-dependent nitri 98.3 8.8E-06 3E-10 73.0 13.9 127 367-496 21-152 (177)
141 3gw4_A Uncharacterized protein 98.3 1.3E-05 4.5E-10 73.5 15.1 94 428-521 67-175 (203)
142 3q49_B STIP1 homology and U bo 98.3 7.8E-06 2.7E-10 69.6 12.6 98 425-522 7-106 (137)
143 1elw_A TPR1-domain of HOP; HOP 98.3 1.6E-05 5.5E-10 65.2 13.9 108 393-502 6-115 (118)
144 1hxi_A PEX5, peroxisome target 98.3 3.5E-06 1.2E-10 70.4 9.7 94 429-522 19-114 (121)
145 3gw4_A Uncharacterized protein 98.3 1.3E-05 4.5E-10 73.5 14.5 152 337-488 4-176 (203)
146 3sz7_A HSC70 cochaperone (SGT) 98.3 6.3E-06 2.2E-10 73.0 11.5 95 427-521 11-107 (164)
147 1na0_A Designed protein CTPR3; 98.2 1.1E-05 3.8E-10 67.0 12.2 96 427-522 9-106 (125)
148 1elw_A TPR1-domain of HOP; HOP 98.2 1.1E-05 3.8E-10 66.2 11.9 97 426-522 3-101 (118)
149 2lni_A Stress-induced-phosphop 98.2 1.1E-05 3.6E-10 68.1 11.8 99 424-522 13-113 (133)
150 4gcn_A Protein STI-1; structur 98.2 5.9E-06 2E-10 69.7 9.9 95 427-521 8-111 (127)
151 4f3v_A ESX-1 secretion system 98.2 1.5E-05 5.2E-10 76.2 13.8 181 337-522 18-237 (282)
152 1a17_A Serine/threonine protei 98.2 3.1E-05 1E-09 68.2 15.1 128 357-487 14-145 (166)
153 2dba_A Smooth muscle cell asso 98.2 1.6E-05 5.5E-10 68.5 12.9 96 426-521 27-127 (148)
154 2xcb_A PCRH, regulatory protei 98.2 1.2E-05 4.1E-10 69.2 11.8 105 393-499 20-126 (142)
155 2fbn_A 70 kDa peptidylprolyl i 98.2 1.1E-05 3.9E-10 73.9 12.4 171 331-522 10-186 (198)
156 3upv_A Heat shock protein STI1 98.2 2E-05 6.7E-10 66.1 12.4 109 393-503 6-122 (126)
157 3sz7_A HSC70 cochaperone (SGT) 98.2 2.8E-05 9.7E-10 68.7 13.8 108 391-500 11-120 (164)
158 2dba_A Smooth muscle cell asso 98.2 3.9E-05 1.3E-09 66.0 14.1 109 392-503 29-143 (148)
159 2vyi_A SGTA protein; chaperone 98.2 1.5E-05 5.1E-10 66.8 11.1 98 425-522 10-109 (131)
160 1p5q_A FKBP52, FK506-binding p 98.1 2.7E-05 9.1E-10 78.2 13.7 120 324-446 146-283 (336)
161 2hr2_A Hypothetical protein; a 98.1 1.4E-05 4.8E-10 69.1 9.8 92 430-521 14-130 (159)
162 3q49_B STIP1 homology and U bo 98.1 3.2E-05 1.1E-09 65.7 12.3 100 390-491 8-109 (137)
163 3q7a_A Farnesyltransferase alp 98.1 0.00037 1.2E-08 69.0 21.1 224 256-521 57-330 (349)
164 2kck_A TPR repeat; tetratricop 98.1 3.6E-05 1.2E-09 62.4 11.2 98 393-492 8-110 (112)
165 3rkv_A Putative peptidylprolyl 98.0 5E-05 1.7E-09 66.9 12.4 63 459-521 63-125 (162)
166 1wao_1 Serine/threonine protei 98.0 1.6E-05 5.5E-10 83.9 10.6 116 400-517 15-134 (477)
167 3q7a_A Farnesyltransferase alp 98.0 0.0038 1.3E-07 61.7 26.8 176 224-405 56-256 (349)
168 1wao_1 Serine/threonine protei 98.0 8.2E-05 2.8E-09 78.4 16.0 114 366-483 16-134 (477)
169 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 6.7E-05 2.3E-09 78.7 15.1 160 339-520 248-413 (457)
170 1elr_A TPR2A-domain of HOP; HO 98.0 2.8E-05 9.6E-10 65.1 10.1 107 394-503 7-122 (131)
171 2xev_A YBGF; tetratricopeptide 98.0 2.7E-05 9.4E-10 65.3 10.0 89 433-521 8-104 (129)
172 1ihg_A Cyclophilin 40; ppiase 98.0 4.5E-05 1.5E-09 77.5 13.2 137 357-514 224-362 (370)
173 2fbn_A 70 kDa peptidylprolyl i 98.0 1.5E-05 5.2E-10 73.0 8.7 146 298-447 12-176 (198)
174 1elr_A TPR2A-domain of HOP; HO 98.0 3.2E-05 1.1E-09 64.8 9.9 95 427-521 4-107 (131)
175 3dss_A Geranylgeranyl transfer 98.0 0.0021 7.1E-08 63.2 24.0 190 306-500 90-316 (331)
176 4gcn_A Protein STI-1; structur 98.0 4.3E-05 1.5E-09 64.3 10.4 104 358-491 10-115 (127)
177 1hxi_A PEX5, peroxisome target 98.0 4E-05 1.4E-09 63.8 10.1 96 395-492 21-118 (121)
178 3k9i_A BH0479 protein; putativ 98.0 7.8E-06 2.7E-10 67.7 5.6 82 440-521 3-89 (117)
179 2xev_A YBGF; tetratricopeptide 97.9 0.00015 5.1E-09 60.7 13.4 99 398-498 9-115 (129)
180 4b4t_Q 26S proteasome regulato 97.9 9.1E-05 3.1E-09 77.0 14.7 163 358-520 57-243 (434)
181 2c2l_A CHIP, carboxy terminus 97.9 6.5E-05 2.2E-09 73.2 12.6 106 390-497 3-110 (281)
182 3dss_A Geranylgeranyl transfer 97.9 0.0027 9.2E-08 62.5 23.8 179 341-522 90-304 (331)
183 3ro3_A PINS homolog, G-protein 97.9 9.8E-05 3.4E-09 64.3 12.2 93 429-521 51-157 (164)
184 2if4_A ATFKBP42; FKBP-like, al 97.9 5.1E-05 1.8E-09 76.1 10.4 147 357-523 180-329 (338)
185 3rkv_A Putative peptidylprolyl 97.9 5.7E-05 1.9E-09 66.6 9.5 76 426-501 62-140 (162)
186 2hr2_A Hypothetical protein; a 97.8 4.2E-05 1.4E-09 66.0 7.5 69 429-497 59-140 (159)
187 3ro3_A PINS homolog, G-protein 97.8 0.00012 4.3E-09 63.6 11.0 132 358-489 11-159 (164)
188 2if4_A ATFKBP42; FKBP-like, al 97.8 4.8E-05 1.6E-09 76.3 9.2 113 393-522 181-293 (338)
189 4b4t_Q 26S proteasome regulato 97.8 0.00028 9.7E-09 73.2 15.4 118 336-453 106-242 (434)
190 1dce_A Protein (RAB geranylger 97.7 0.0014 4.7E-08 70.4 19.8 168 341-511 45-244 (567)
191 3n71_A Histone lysine methyltr 97.7 7.4E-05 2.5E-09 78.4 9.4 123 401-523 319-465 (490)
192 3k9i_A BH0479 protein; putativ 97.7 4.2E-05 1.4E-09 63.2 5.9 92 404-495 3-97 (117)
193 2l6j_A TPR repeat-containing p 97.7 8.2E-05 2.8E-09 60.3 7.5 92 426-517 3-102 (111)
194 3ma5_A Tetratricopeptide repea 97.7 0.00019 6.6E-09 57.2 9.2 65 457-521 5-69 (100)
195 1na3_A Designed protein CTPR2; 97.7 0.0002 6.9E-09 55.5 9.1 82 426-507 8-91 (91)
196 1ihg_A Cyclophilin 40; ppiase 97.6 0.00041 1.4E-08 70.4 12.2 113 391-522 223-336 (370)
197 2kat_A Uncharacterized protein 97.6 0.00023 8E-09 58.3 8.3 77 445-521 3-81 (115)
198 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00067 2.3E-08 71.1 13.6 94 324-418 267-378 (457)
199 1zu2_A Mitochondrial import re 97.5 7.8E-05 2.7E-09 64.2 4.5 85 439-523 14-121 (158)
200 3bee_A Putative YFRE protein; 97.3 0.0013 4.4E-08 51.4 9.3 69 456-524 3-74 (93)
201 3n71_A Histone lysine methyltr 97.3 0.00063 2.2E-08 71.3 9.1 115 435-567 317-449 (490)
202 2l6j_A TPR repeat-containing p 97.3 0.00089 3E-08 54.0 8.2 66 457-522 2-67 (111)
203 1zu2_A Mitochondrial import re 97.2 0.00037 1.3E-08 60.0 5.4 85 407-493 18-125 (158)
204 3qwp_A SET and MYND domain-con 97.2 0.0014 4.6E-08 67.7 10.2 116 434-567 294-427 (429)
205 1klx_A Cysteine rich protein B 97.1 0.006 2.1E-07 51.7 12.5 114 371-523 10-127 (138)
206 1dce_A Protein (RAB geranylger 97.1 0.0094 3.2E-07 63.9 16.3 149 369-521 42-220 (567)
207 1na3_A Designed protein CTPR2; 97.0 0.0021 7.1E-08 49.5 8.0 65 458-522 8-72 (91)
208 2kat_A Uncharacterized protein 97.0 0.0028 9.7E-08 51.6 9.0 80 410-491 4-85 (115)
209 1klx_A Cysteine rich protein B 97.0 0.0043 1.5E-07 52.6 10.4 106 339-453 9-123 (138)
210 3qww_A SET and MYND domain-con 96.9 0.00089 3E-08 69.0 6.4 82 440-521 311-410 (433)
211 3ly7_A Transcriptional activat 96.8 0.019 6.5E-07 56.7 14.1 47 353-401 191-243 (372)
212 3ma5_A Tetratricopeptide repea 96.7 0.008 2.7E-07 47.5 9.0 62 355-418 6-68 (100)
213 1wy6_A Hypothetical protein ST 96.7 0.17 5.6E-06 41.4 15.9 139 368-525 19-157 (172)
214 2kc7_A BFR218_protein; tetratr 96.6 0.013 4.3E-07 46.0 9.2 64 433-496 6-72 (99)
215 3qww_A SET and MYND domain-con 96.6 0.016 5.4E-07 59.6 12.2 93 403-495 310-423 (433)
216 3mkq_A Coatomer beta'-subunit; 96.5 0.095 3.3E-06 59.0 19.9 102 230-350 660-761 (814)
217 3qwp_A SET and MYND domain-con 96.5 0.024 8.3E-07 58.3 12.9 98 400-497 296-414 (429)
218 2kc7_A BFR218_protein; tetratr 96.5 0.0072 2.5E-07 47.4 7.2 59 465-523 6-65 (99)
219 1pc2_A Mitochondria fission pr 96.1 0.04 1.4E-06 46.8 10.1 65 457-521 30-99 (152)
220 3mkq_A Coatomer beta'-subunit; 96.1 0.24 8.4E-06 55.6 20.0 131 294-454 633-763 (814)
221 3ly7_A Transcriptional activat 95.9 0.089 3E-06 51.9 13.1 133 387-523 190-340 (372)
222 3u64_A Protein TP_0956; tetrat 95.7 0.042 1.5E-06 52.0 9.3 86 443-528 179-275 (301)
223 1qsa_A Protein (soluble lytic 95.4 3.5 0.00012 44.1 27.4 250 223-487 73-347 (618)
224 3lvg_A Clathrin heavy chain 1; 95.4 0.016 5.4E-07 58.6 5.3 403 18-451 31-536 (624)
225 2v5f_A Prolyl 4-hydroxylase su 95.3 0.12 4.2E-06 40.9 9.8 74 426-499 4-86 (104)
226 3bee_A Putative YFRE protein; 95.3 0.12 4.1E-06 40.0 9.2 69 424-492 3-76 (93)
227 3mkq_B Coatomer subunit alpha; 95.1 0.41 1.4E-05 41.6 12.8 128 334-485 14-141 (177)
228 1pc2_A Mitochondria fission pr 94.8 0.12 4.3E-06 43.7 8.6 86 408-495 15-107 (152)
229 3lvg_A Clathrin heavy chain 1; 94.2 0.015 5.1E-07 58.8 1.7 237 114-376 53-324 (624)
230 3mkq_B Coatomer subunit alpha; 94.2 2.6 8.9E-05 36.6 16.4 105 230-353 13-117 (177)
231 3u64_A Protein TP_0956; tetrat 93.3 4.9 0.00017 38.0 17.1 111 338-453 134-266 (301)
232 1nzn_A CGI-135 protein, fissio 92.7 0.55 1.9E-05 38.2 8.4 69 425-493 33-108 (126)
233 2v5f_A Prolyl 4-hydroxylase su 92.2 0.63 2.2E-05 36.6 8.3 64 458-521 4-74 (104)
234 4gns_B Protein CSD3, chitin bi 91.6 1.3 4.6E-05 48.3 12.5 54 467-520 345-398 (754)
235 1y8m_A FIS1; mitochondria, unk 90.3 6.9 0.00024 32.4 13.1 65 457-521 37-105 (144)
236 1nzn_A CGI-135 protein, fissio 90.1 2.6 8.8E-05 34.2 9.8 86 370-458 15-106 (126)
237 4h7y_A Dual specificity protei 88.5 2.9 0.0001 35.0 9.1 51 473-523 74-124 (161)
238 2wpv_A GET4, UPF0363 protein Y 88.0 19 0.00066 34.5 21.7 171 117-317 35-215 (312)
239 4h7y_A Dual specificity protei 87.7 5.9 0.0002 33.2 10.4 54 441-494 74-129 (161)
240 4fhn_B Nucleoporin NUP120; pro 86.7 14 0.00047 43.1 17.1 164 226-409 816-989 (1139)
241 1wy6_A Hypothetical protein ST 85.9 13 0.00045 30.5 15.0 83 338-423 74-156 (172)
242 2p58_C Putative type III secre 85.9 10 0.00034 29.1 9.9 88 304-396 21-108 (116)
243 3lpz_A GET4 (YOR164C homolog); 85.2 28 0.00097 33.6 21.8 138 118-268 38-182 (336)
244 2uwj_G Type III export protein 85.1 10 0.00036 28.9 9.5 85 203-294 22-106 (115)
245 2uwj_G Type III export protein 85.0 9.4 0.00032 29.2 9.3 87 305-396 21-107 (115)
246 2p58_C Putative type III secre 85.0 11 0.00038 28.8 10.6 85 203-294 23-107 (116)
247 3ffl_A Anaphase-promoting comp 83.6 7.4 0.00025 33.2 9.4 110 331-454 26-149 (167)
248 2ff4_A Probable regulatory pro 83.1 3.1 0.00011 41.8 8.4 60 462-521 174-233 (388)
249 4b4t_P 26S proteasome regulato 82.7 45 0.0015 33.9 17.6 87 189-279 143-244 (445)
250 3o48_A Mitochondria fission 1 81.2 7.3 0.00025 31.8 8.1 44 477-520 61-105 (134)
251 1v54_E Cytochrome C oxidase po 80.3 12 0.00043 28.7 8.5 62 269-333 26-87 (109)
252 4gns_B Protein CSD3, chitin bi 80.2 58 0.002 35.5 17.3 52 401-454 347-398 (754)
253 2ff4_A Probable regulatory pro 79.8 13 0.00044 37.2 11.5 68 361-429 176-247 (388)
254 1v54_E Cytochrome C oxidase po 79.6 11 0.00036 29.1 7.9 62 372-435 26-87 (109)
255 4ady_A RPN2, 26S proteasome re 76.5 1E+02 0.0035 34.5 22.6 147 231-384 499-657 (963)
256 3txn_A 26S proteasome regulato 76.2 65 0.0022 32.0 17.3 56 397-452 105-164 (394)
257 1zbp_A Hypothetical protein VP 75.3 18 0.00061 33.7 9.9 52 400-453 6-57 (273)
258 4fhn_B Nucleoporin NUP120; pro 74.3 25 0.00087 40.9 13.5 123 396-524 817-969 (1139)
259 3lpz_A GET4 (YOR164C homolog); 73.8 67 0.0023 31.0 22.3 169 223-419 36-215 (336)
260 3ltm_A Alpha-REP4; protein eng 70.3 56 0.0019 28.7 20.5 80 323-406 93-172 (211)
261 2y69_E Cytochrome C oxidase su 69.7 23 0.00078 28.9 7.9 60 374-435 71-130 (152)
262 3o48_A Mitochondria fission 1 68.9 29 0.001 28.3 8.6 70 425-494 38-113 (134)
263 1y8m_A FIS1; mitochondria, unk 68.5 49 0.0017 27.3 10.9 71 424-494 36-112 (144)
264 1wdy_A 2-5A-dependent ribonucl 67.6 41 0.0014 31.1 11.3 47 303-349 192-240 (285)
265 1n11_A Ankyrin; clathrin, BAND 67.0 23 0.00077 35.8 9.9 82 55-140 17-102 (437)
266 2wpv_A GET4, UPF0363 protein Y 66.7 92 0.0031 29.7 22.7 168 327-521 35-216 (312)
267 4b4t_P 26S proteasome regulato 66.5 1.2E+02 0.0039 30.8 22.2 95 359-453 140-244 (445)
268 3ffl_A Anaphase-promoting comp 66.3 61 0.0021 27.6 11.5 111 229-352 27-149 (167)
269 1zbp_A Hypothetical protein VP 66.3 12 0.00042 34.7 6.7 56 436-491 6-63 (273)
270 2y69_E Cytochrome C oxidase su 62.0 64 0.0022 26.3 9.8 49 452-500 81-129 (152)
271 1n11_A Ankyrin; clathrin, BAND 60.1 97 0.0033 30.9 13.2 197 27-248 26-235 (437)
272 4g8k_A 2-5A-dependent ribonucl 58.5 1.3E+02 0.0044 28.7 15.2 56 53-113 26-85 (337)
273 3ltj_A Alpharep-4; protein eng 58.0 93 0.0032 26.9 22.1 141 220-370 26-166 (201)
274 4b4t_R RPN7, 26S proteasome re 57.8 58 0.002 32.9 10.8 95 327-421 133-238 (429)
275 2qx5_A Nucleoporin NIC96; mRNA 56.6 2.1E+02 0.0072 30.6 15.2 41 52-92 155-198 (661)
276 3esl_A Checkpoint serine/threo 56.5 1E+02 0.0035 27.2 10.5 105 444-574 61-171 (202)
277 4ady_A RPN2, 26S proteasome re 55.7 2.6E+02 0.0088 31.4 28.2 255 193-462 384-664 (963)
278 4b4t_R RPN7, 26S proteasome re 50.7 91 0.0031 31.4 10.9 96 358-453 133-234 (429)
279 3ltm_A Alpha-REP4; protein eng 50.2 1.3E+02 0.0044 26.2 21.7 171 219-403 30-200 (211)
280 2qx5_A Nucleoporin NIC96; mRNA 49.0 2.8E+02 0.0094 29.7 17.0 21 231-251 452-472 (661)
281 2l0z_A Glycoprotein G2; zinc-b 46.2 6.5 0.00022 24.1 0.8 17 645-661 12-29 (42)
282 1wdy_A 2-5A-dependent ribonucl 45.1 1E+02 0.0035 28.2 9.8 18 230-247 10-27 (285)
283 4b4t_S RPN3, 26S proteasome re 43.4 1.5E+02 0.0052 30.5 10.9 58 392-453 232-296 (523)
284 3eu9_A Huntingtin-interacting 42.1 1.3E+02 0.0045 26.5 9.8 78 58-140 15-98 (240)
285 3mv2_A Coatomer subunit alpha; 42.1 2.4E+02 0.0081 26.9 13.0 122 60-216 125-256 (325)
286 3eu9_A Huntingtin-interacting 41.3 89 0.0031 27.7 8.5 19 122-140 46-64 (240)
287 1k1a_A B-cell lymphoma 3-encod 41.1 1.3E+02 0.0043 26.7 9.5 19 229-247 154-172 (241)
288 2nsz_A Programmed cell death p 40.8 86 0.0029 25.3 7.1 63 328-390 10-77 (129)
289 3hra_A Ankyrin repeat family p 39.5 1.8E+02 0.0061 24.8 10.5 154 56-221 9-172 (201)
290 4gq2_M Nucleoporin NUP120; bet 37.8 2.7E+02 0.0093 31.4 13.1 90 397-492 816-931 (950)
291 1k1a_A B-cell lymphoma 3-encod 37.5 1.8E+02 0.0062 25.6 10.0 81 193-278 16-101 (241)
292 2d2s_A Exocyst complex compone 36.5 1.3E+02 0.0046 27.2 8.5 21 259-279 24-44 (235)
293 3esl_A Checkpoint serine/threo 36.4 2.2E+02 0.0076 25.0 9.5 47 306-352 95-142 (202)
294 4a1g_A Mitotic checkpoint seri 35.0 2E+02 0.0068 24.0 9.4 48 477-524 83-132 (152)
295 3ltj_A Alpharep-4; protein eng 34.8 2.2E+02 0.0074 24.4 20.3 17 289-305 151-167 (201)
296 2zu6_B Programmed cell death p 33.5 78 0.0027 30.2 6.6 68 256-326 169-238 (307)
297 2d2s_A Exocyst complex compone 32.7 1E+02 0.0034 28.1 7.0 19 55-73 24-42 (235)
298 2ion_A PDCD4, programmed cell 32.2 81 0.0028 26.4 5.8 62 328-389 12-78 (152)
299 2hgo_A CASSIICOLIN; toxin, dis 32.1 9.1 0.00031 20.2 -0.1 14 649-662 7-22 (27)
300 3kea_A K1L; tropism, ANK repea 31.6 1.2E+02 0.0042 28.1 7.9 88 433-525 132-220 (285)
301 3ygs_P Procaspase 9; apoptosis 30.9 42 0.0015 25.6 3.5 65 101-167 25-89 (97)
302 3ljn_A Hypothetical protein; a 29.1 96 0.0033 30.0 6.9 41 208-248 154-196 (364)
303 2k0q_A Putative uncharacterize 28.6 18 0.00063 25.2 0.9 21 638-658 8-28 (74)
304 2nsz_A Programmed cell death p 28.6 2.3E+02 0.0078 22.7 9.7 62 225-288 10-76 (129)
305 3b7b_A Euchromatic histone-lys 28.3 1.2E+02 0.0041 26.8 7.0 23 55-77 14-36 (237)
306 3ljn_A Hypothetical protein; a 28.3 1.5E+02 0.0051 28.6 8.2 88 181-278 16-106 (364)
307 3kea_A K1L; tropism, ANK repea 28.2 1.7E+02 0.006 27.0 8.3 10 64-73 11-20 (285)
308 2ion_A PDCD4, programmed cell 28.1 1.6E+02 0.0055 24.5 7.0 23 257-279 13-35 (152)
309 4b4t_S RPN3, 26S proteasome re 27.9 1.7E+02 0.0057 30.2 8.3 59 51-109 233-299 (523)
310 2wvi_A Mitotic checkpoint seri 27.6 2.8E+02 0.0095 23.4 9.5 47 478-524 79-127 (164)
311 1qsa_A Protein (soluble lytic 27.5 5.7E+02 0.02 27.0 39.6 418 59-513 16-470 (618)
312 2rfa_A Transient receptor pote 26.8 2.7E+02 0.0094 24.3 9.2 82 55-142 6-99 (232)
313 3hra_A Ankyrin repeat family p 26.7 1.6E+02 0.0055 25.1 7.3 16 126-141 13-28 (201)
314 4gq2_M Nucleoporin NUP120; bet 26.1 6.1E+02 0.021 28.5 13.4 126 228-370 816-950 (950)
315 1oyz_A Hypothetical protein YI 25.9 3.8E+02 0.013 24.4 22.8 48 221-268 36-83 (280)
316 3b7b_A Euchromatic histone-lys 25.2 2.2E+02 0.0075 25.0 8.2 103 209-318 126-235 (237)
317 2rfa_A Transient receptor pote 24.7 2.2E+02 0.0074 25.0 8.0 26 297-322 158-183 (232)
318 2lo3_A SAGA-associated factor 23.3 22 0.00076 22.0 0.5 13 618-630 16-28 (44)
319 4a1g_A Mitotic checkpoint seri 22.4 3.4E+02 0.012 22.6 8.5 51 271-323 83-134 (152)
320 2p1h_A APAF-1, apoptotic prote 22.1 1.5E+02 0.005 22.1 5.2 63 99-165 24-86 (94)
321 3ygs_P Procaspase 9; apoptosis 21.8 1.2E+02 0.0039 23.1 4.5 37 339-375 51-87 (97)
322 3u84_A Menin; MLL, JUND, ledgf 21.8 2.8E+02 0.0097 27.4 7.9 54 492-565 317-370 (550)
323 3mkr_B Coatomer subunit alpha; 21.4 5.3E+02 0.018 24.5 11.6 123 60-217 113-248 (320)
324 1oyz_A Hypothetical protein YI 21.2 4.6E+02 0.016 23.7 26.0 21 248-268 137-157 (280)
325 3jxi_A Vanilloid receptor-rela 20.8 1.4E+02 0.0047 27.0 5.9 88 55-143 8-118 (260)
326 2pk8_A Uncharacterized protein 20.8 47 0.0016 24.7 1.9 29 550-578 13-41 (103)
327 2zu6_B Programmed cell death p 20.6 5.4E+02 0.018 24.3 12.8 55 225-279 6-64 (307)
328 3bqo_A Telomeric repeat-bindin 20.5 4.3E+02 0.015 23.1 8.1 51 443-493 94-151 (211)
329 2p1h_A APAF-1, apoptotic prote 20.2 2.7E+02 0.0092 20.6 6.8 63 206-272 24-86 (94)
330 3aji_A 26S proteasome non-ATPa 20.1 2.1E+02 0.0071 25.1 6.8 13 127-139 15-27 (231)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.9e-42 Score=376.98 Aligned_cols=475 Identities=9% Similarity=-0.036 Sum_probs=395.2
Q ss_pred CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh--cCCCCCHhhHHHHHHHHhcCCChHHHHHHHH
Q 006076 27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS--IEPNPTQHTYELLLLSCTHHNSLSDALNVHS 104 (662)
Q Consensus 27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 104 (662)
.+..++..| +.++.+++.. |+.++..|.+.|++++|+.+|+ ....|+..++..++.+|.+.|++++|..+|.
T Consensus 68 ~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 68 SFLKERNAQ-NTDSLSREDY-----LRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ---------------CHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCcc-ccchHHHHHH-----HHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 567788888 8887776665 5669999999999999999998 3456788999999999999999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCC-------------------CcchHHHHHHHHHhcCCccHH
Q 006076 105 HLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR-------------------TIYVWNALFRALTLAGRGEEV 165 (662)
Q Consensus 105 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A 165 (662)
.+... ++++.+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 88654 678999999999999999999999999965443 378999999999999999999
Q ss_pred HHHHHHHhhCCCCCCCChh-hHHHHHHHHHhCCCCccchHHHHHH-HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006076 166 LELYRRMNGTGTGIRSDRF-TYTYVLKACVASSCGFSLLKHGKEI-HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243 (662)
Q Consensus 166 ~~l~~~m~~~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 243 (662)
+++|++|.+. .|+.. .+..+...+...+. ...+....+ +..+...+..+...+++.++.+|.+.|++++|.+
T Consensus 220 ~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 220 KECYKEALMV----DAKCYEAFDQLVSNHLLTAD--EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHH----CTTCHHHHHHHHHTTCSCHH--HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHh----CchhhHHHHHHHHhhcccch--hHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 9999999876 34433 33333332221111 001111111 3444444555566778888999999999999999
Q ss_pred HHHcCCC--CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 006076 244 VFSQMAV--KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL 321 (662)
Q Consensus 244 ~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 321 (662)
+|+++.+ ++..+|+.++.+|.+.|++++|+++|+++ ...+ +.+..++..++.++...|++++|..+++.+.+..
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI--LEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 9999987 79999999999999999999999999999 4433 3477889999999999999999999999999764
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 006076 322 DSILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398 (662)
Q Consensus 322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 398 (662)
+.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG 448 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 5578899999999999999999999999875 3568899999999999999999999999999853 44778999999
Q ss_pred HHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-------CCCCC--HHHHHHHHHHH
Q 006076 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-------RIEPG--PKVWGSLLGSC 469 (662)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~ 469 (662)
.+|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 99999999999999999998653 457899999999999999999999999988 44777 78999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
...|++++|...++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-37 Score=339.97 Aligned_cols=471 Identities=11% Similarity=0.027 Sum_probs=393.5
Q ss_pred chhhhccCC---CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcC--CCCCHhhHHHHHHHHhc
Q 006076 18 HTNSIAHLP---PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIE--PNPTQHTYELLLLSCTH 92 (662)
Q Consensus 18 ~~~li~~y~---~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~p~~~~~~~ll~~~~~ 92 (662)
-+.++..|. +.++|..+| +.+...++ +..+|+.++.+|.+.|++++|+.+|+.. .+++..+++.++.++.+
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~-~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVG-EKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH-HHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHH-HHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 467777777 899999999 88863322 2245778999999999999999999943 67899999999999999
Q ss_pred CCChHHHHHHHHHHHHh---------------CCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCC---cchHHHHHH
Q 006076 93 HNSLSDALNVHSHLTDN---------------GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT---IYVWNALFR 154 (662)
Q Consensus 93 ~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~ 154 (662)
.|++++|.++|+.+... |..++..+|+.++.+|.+.|++++|.++|+++.+.+ ...|..+..
T Consensus 163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 242 (597)
T 2xpi_A 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS 242 (597)
T ss_dssp TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 99999999999853211 223457899999999999999999999999987543 345555555
Q ss_pred HHHhcCCccHHHH--H-HHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006076 155 ALTLAGRGEEVLE--L-YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231 (662)
Q Consensus 155 ~~~~~g~~~~A~~--l-~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 231 (662)
.+...+..+.+.. + +..+... +..++..+|+.++..|.+.++ +++|.+++..+.+. +++..+++.++.+
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~----~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKE--DAAFLRSLYMLKLNKTSHEDE----LRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGG--GHHHHHHHHHTTSCTTTTHHH----HHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhcCCcccccc--hHHHHHHHHHHHHHHHcCcch----HHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 4444333222221 1 4555544 444555566666777777777 99999999998866 5889999999999
Q ss_pred HHhcCCHHHHHHHHHcCC---CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHH
Q 006076 232 YARFGCVMYAGFVFSQMA---VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308 (662)
Q Consensus 232 y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~ 308 (662)
|.+.|++++|..+|+++. ..+..+|+.++.+|.+.|++++|.++|+++ ... .+.+..++..+...|.+.|++++
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL--VDR-HPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH--HHH-CTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH--Hhh-CcccHHHHHHHHHHHHHhccHHH
Confidence 999999999999999985 347789999999999999999999999999 432 24568899999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006076 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385 (662)
Q Consensus 309 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (662)
|.++|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999998864 3468899999999999999999999999875 357889999999999999999999999999986
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc---CCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-C
Q 006076 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH---MIRPS--VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-G 458 (662)
Q Consensus 386 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 458 (662)
. +.+..+|..+...+.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...| +
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 3 4468899999999999999999999999997542 45677 789999999999999999999999987 3334 7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 006076 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505 (662)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (662)
..+|..+..+|...|++++|...++++++++|+++..+..|+++|..
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999988753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.5e-27 Score=253.46 Aligned_cols=184 Identities=13% Similarity=0.169 Sum_probs=164.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHhCCCCc
Q 006076 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA---------LEQGKMIHGYILRRGLDSI 324 (662)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~g~~~~ 324 (662)
..++.+|.+|++.|+.++|+++|++| ...|++||.+||+++|.+|+..+. ++.|.++|++|.+.|+.||
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M--~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEA--RRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHH--HHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH--HHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 45788889999999999999999999 788999999999999999886543 6888999999999999999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 006076 325 LPVVSALVTMYARCGKLELGQCVFDHMD----KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400 (662)
Q Consensus 325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 400 (662)
..+||+||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999886 489999999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 006076 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA 440 (662)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 440 (662)
|++.|++++|.+++++|. +.|+.|+..+|+.++..|...
T Consensus 185 ~~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999996 567899999999999988764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.8e-24 Score=224.99 Aligned_cols=372 Identities=14% Similarity=0.097 Sum_probs=232.7
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCCccH
Q 006076 88 LSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR---RRTIYVWNALFRALTLAGRGEE 164 (662)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 164 (662)
..+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++... ..+..+|+.+...|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 33445566666666666666543 2233445555555566666666666655432 2244556666666666666666
Q ss_pred HHHHHHHHhhCCCCCCCC-hhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006076 165 VLELYRRMNGTGTGIRSD-RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF 243 (662)
Q Consensus 165 A~~l~~~m~~~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 243 (662)
|++.|+++... .|+ ..++..+..++...++ +++|.+.+..+++.. +.+..
T Consensus 86 A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~-p~~~~-------------------- 136 (388)
T 1w3b_A 86 AIEHYRHALRL----KPDFIDGYINLAAALVAAGD----MEGAVQAYVSALQYN-PDLYC-------------------- 136 (388)
T ss_dssp HHHHHHHHHHH----CTTCHHHHHHHHHHHHHHSC----SSHHHHHHHHHHHHC-TTCTH--------------------
T ss_pred HHHHHHHHHHc----CcchHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhC-CCcHH--------------------
Confidence 66666655543 222 2234444444444444 444444444444432 22223
Q ss_pred HHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 006076 244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323 (662)
Q Consensus 244 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 323 (662)
.+..+...+...|++++|++.|.++. ... +.+..++..+...+...|++++|...++.+++.+ +.
T Consensus 137 -----------~~~~l~~~~~~~g~~~~A~~~~~~al--~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 201 (388)
T 1w3b_A 137 -----------VRSDLGNLLKALGRLEEAKACYLKAI--ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN 201 (388)
T ss_dssp -----------HHHHHHHHHHTTSCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT
T ss_pred -----------HHHHHHHHHHHccCHHHHHHHHHHHH--HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 33444444444444444444444442 111 1123344444444445555555555555554443 22
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHH
Q 006076 324 ILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLG 399 (662)
Q Consensus 324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 399 (662)
+...+..+...+...|++++|...|++.. ..+..+|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLAN 279 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 34556666777777777777777776554 234667888888888888888888888888874 34 3567788888
Q ss_pred HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 006076 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVEL 477 (662)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 477 (662)
++.+.|++++|.+.|+.+.+.. +.+..++..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887542 557788888888888888888888888887 3344 56788888888888899999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076 478 AERASKRLFELEPTNAGNYVLLADVYAAADM 508 (662)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (662)
|...+++++++.|+++..|..++.+|...|+
T Consensus 358 A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 358 ALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999988888888888888888876653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.1e-27 Score=251.04 Aligned_cols=211 Identities=13% Similarity=0.065 Sum_probs=170.3
Q ss_pred HHHHHHHHHhhCCCCCCCCh-hhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 006076 164 EVLELYRRMNGTGTGIRSDR-FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG 242 (662)
Q Consensus 164 ~A~~l~~~m~~~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 242 (662)
.+..+.+++.+. ++.+.. ..++.+|.+|++.|+ +++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k--~~~~spe~~l~~~id~c~k~G~----~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~- 80 (501)
T 4g26_A 8 PSENLSRKAKKK--AIQQSPEALLKQKLDMCSKKGD----VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES- 80 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCC----HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-
T ss_pred hHHHHHHHHHHh--cccCCCHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-
Confidence 344555666655 454433 356777888888887 888888888888888888888888888877776653221
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 006076 243 FVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD 322 (662)
Q Consensus 243 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 322 (662)
.+.+..++|.++|++| ...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.
T Consensus 81 ---------------------~~~~~l~~A~~lf~~M--~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~ 137 (501)
T 4g26_A 81 ---------------------SPNPGLSRGFDIFKQM--IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 137 (501)
T ss_dssp ---------------------SCCHHHHHHHHHHHHH--HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred ---------------------hhcchHHHHHHHHHHH--HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 1234568899999999 88999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 006076 323 SILPVVSALVTMYARCGKLELGQCVFDHMD----KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398 (662)
Q Consensus 323 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 398 (662)
||..+||+||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++
T Consensus 138 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~ 217 (501)
T 4g26_A 138 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIE 217 (501)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 999999999999999999999999999996 5899999999999999999999999999999999999999999999
Q ss_pred HHHhcC
Q 006076 399 GACSHA 404 (662)
Q Consensus 399 ~a~~~~ 404 (662)
..|+..
T Consensus 218 ~~F~s~ 223 (501)
T 4g26_A 218 EWFKSE 223 (501)
T ss_dssp HHHHSH
T ss_pred HHHhcC
Confidence 988764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=5.9e-24 Score=221.20 Aligned_cols=351 Identities=13% Similarity=0.073 Sum_probs=303.1
Q ss_pred HHHHHhcCCccHHHHHHHHHhhCCCCCCCCh-hhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006076 153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDR-FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM 231 (662)
Q Consensus 153 i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 231 (662)
...+.+.|++++|++.+.++.+. .|+. ..+..+...+...++ ++++...+...++.. +.+..++..+...
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~----~~~a~~~~~~a~~~~-p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRR----LDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 45567789999999999988765 4554 445555566677788 999999999888775 6678899999999
Q ss_pred HHhcCCHHHHHHHHHcCC--CC-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH-HHHHHHHHHHHccCCHH
Q 006076 232 YARFGCVMYAGFVFSQMA--VK-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS-VTMVSVLQACAALAALE 307 (662)
Q Consensus 232 y~~~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-~t~~~ll~a~~~~~~~~ 307 (662)
|.+.|++++|...|+++. .| +..+|..+..++.+.|++++|++.|.++ ... .|+. ..+..+...+...|+++
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--l~~--~p~~~~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA--LQY--NPDLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH--HHH--CTTCTHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHh--CCCcHHHHHHHHHHHHHccCHH
Confidence 999999999999999875 23 5678999999999999999999999998 332 3554 45666777788899999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384 (662)
Q Consensus 308 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (662)
+|.+.+..+++.. +.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++...
T Consensus 153 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 153 EAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999874 34578899999999999999999999998863 3567899999999999999999999999988
Q ss_pred cCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-C-CCCCHHH
Q 006076 385 HGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-R-IEPGPKV 461 (662)
Q Consensus 385 ~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~ 461 (662)
. .| +..++..+..++...|++++|.+.|+.+.+.. +.+...|..+...|.+.|++++|.+.++++ . .+++..+
T Consensus 232 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 307 (388)
T 1w3b_A 232 L--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307 (388)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred h--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH
Confidence 4 45 46788899999999999999999999998642 346788999999999999999999999988 2 3457889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
|..+...+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999886
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.6e-22 Score=213.56 Aligned_cols=425 Identities=10% Similarity=-0.044 Sum_probs=300.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCC---CCCcchHHHHHHHHHh
Q 006076 82 TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR---RRTIYVWNALFRALTL 158 (662)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 158 (662)
.+......+.+.|++++|...+..+++.. |++.++..+..+|.+.|++++|...|+++. ..+..+|..+...|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 44555566667777777777777777764 567777777777777777777777777543 2355677777788888
Q ss_pred cCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhc
Q 006076 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL---IDMYARF 235 (662)
Q Consensus 159 ~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~y~~~ 235 (662)
.|++++|+..|+++... + +++......++..+..... ...+.+.+..+...+..|+....+.- .......
T Consensus 86 ~g~~~~A~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLN--G-DFNDASIEPMLERNLNKQA----MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp TTCHHHHHHHHHHHHHS--S-SCCGGGTHHHHHHHHHHHH----HHHHTTC---------------------------CC
T ss_pred HhhHHHHHHHHHHHHhc--C-CCccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 88888888888887765 2 2344444444433332211 22222222111111111111000000 0000011
Q ss_pred CCHHHHHHHHHcCC---------CC-CHhHHHHHHHHHHH---cCChhHHHHHHHHHhhhh-----CCC--------cCC
Q 006076 236 GCVMYAGFVFSQMA---------VK-NVVSWSAMIACYAR---NGMAFEALELFREMIMES-----HDL--------CPN 289 (662)
Q Consensus 236 g~~~~A~~~f~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~-----~~~--------~p~ 289 (662)
.....+...+.... .+ +...|......+.. .|++++|+..|+++. . ... +.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA--RLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH--HHHHHHTTTSTTCHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH--HHhhhhhccCccccccChHH
Confidence 11111112222211 12 24455555555554 899999999999984 3 211 223
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHH
Q 006076 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSY 366 (662)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 366 (662)
..++..+...+...|++++|...++.+.+.... ..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 456777788889999999999999999988644 88889999999999999999999998753 4677899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 006076 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446 (662)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 446 (662)
...|++++|+..|++..... +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999853 2345788888899999999999999999998653 44678899999999999999999
Q ss_pred HHHHHhc----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHH
Q 006076 447 AKIIEDL----RIEPG----PKVWGSLLGSCRI---HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515 (662)
Q Consensus 447 ~~~~~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (662)
...++++ +..|+ ..+|..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|...
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999887 22232 4488999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhC
Q 006076 516 KRLLEAR 522 (662)
Q Consensus 516 ~~~m~~~ 522 (662)
+++..+.
T Consensus 472 ~~~a~~~ 478 (514)
T 2gw1_A 472 FEESADL 478 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998864
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.9e-21 Score=209.97 Aligned_cols=435 Identities=8% Similarity=-0.050 Sum_probs=317.0
Q ss_pred hHHHHHHHHhCCCchHHHHHHh--cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCC
Q 006076 52 KNELIQSLCKQGNLRQALDVLS--IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129 (662)
Q Consensus 52 ~~~li~~~~~~g~~~~A~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 129 (662)
|......+.+.|++++|+..|+ ....|+..+|..+..++...|++++|.+.+..+++.. +.+..++..+..+|.+.|
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHh
Confidence 4557788999999999999999 2233789999999999999999999999999999876 446678999999999999
Q ss_pred ChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHH
Q 006076 130 SVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206 (662)
Q Consensus 130 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a 206 (662)
++++|...|+++.. .+......++..+........+.+.+..+... +..|+...+..-......... ....
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~ 161 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA--TATPTELSTQPAKERKDKQEN----LPSV 161 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------C----CCCH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhccCChhhHHHhhccC----Cchh
Confidence 99999999987643 23444455555444433333333333222222 111221111111000000000 1111
Q ss_pred HHHHHHHHHhCC---------CCchhHHHHHHHHHHh---cCCHHHHHHHHHcCCC----------------C-CHhHHH
Q 006076 207 KEIHASVLRHGY---------NGIVHIMTTLIDMYAR---FGCVMYAGFVFSQMAV----------------K-NVVSWS 257 (662)
Q Consensus 207 ~~~~~~~~~~g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~ 257 (662)
..+...+..... +.+...+..+...+.. .|++++|...|+++.. + +..+|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111100 2234444445554554 8999999999987644 2 356788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006076 258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337 (662)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 337 (662)
.+...+...|++++|+..|+++ .... |+..++..+...+...|++++|...++.+.+.. +.+..++..+...|.+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~--l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKA--IELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHH--HHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH--HhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 8999999999999999999988 4333 447778888889999999999999999998764 3467788999999999
Q ss_pred cCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076 338 CGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414 (662)
Q Consensus 338 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (662)
.|++++|...|++.. ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999874 3467789999999999999999999999998852 335678888999999999999999999
Q ss_pred HHhHHhcCCCCC----hHHHHHHHHHHhh---cCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076 415 ESMRKEHMIRPS----VEHYACMVDLLGR---ANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRL 485 (662)
Q Consensus 415 ~~~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 485 (662)
+.+.+...-.++ ...+..+...|.+ .|++++|...++++ .. +.+..+|..+...+...|++++|...++++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 998764322222 4489999999999 99999999999987 22 346788999999999999999999999999
Q ss_pred HhcCCCCcchHHHH
Q 006076 486 FELEPTNAGNYVLL 499 (662)
Q Consensus 486 ~~~~p~~~~~~~~l 499 (662)
+++.|+++..+..+
T Consensus 476 ~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 476 ADLARTMEEKLQAI 489 (514)
T ss_dssp HHHCSSHHHHHHHH
T ss_pred HHhccccHHHHHHH
Confidence 99999987766655
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=6.5e-21 Score=202.22 Aligned_cols=335 Identities=13% Similarity=0.051 Sum_probs=239.1
Q ss_pred CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhH
Q 006076 145 TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI 224 (662)
Q Consensus 145 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 224 (662)
++..|..+...+.+.|++++|+.+|+++... .+.+..++..+..++...++ +++|...+..+++.+ +.+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~-p~~~~~ 96 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGK----SKAALPDLTKVIQLK-MDFTAA 96 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhcC-CCcHHH
Confidence 3455666666677777777777777766653 23345555666666666666 666666666666554 334556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCCC---CH---hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHH
Q 006076 225 MTTLIDMYARFGCVMYAGFVFSQMAVK---NV---VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298 (662)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~f~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~ 298 (662)
+..+..+|.+.|++++|...|+++.+. +. ..|..++..+...+ +..+..
T Consensus 97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------------~~~~a~ 151 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------------LRSQAL 151 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------------HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------------HHHHHH
Confidence 666666666666666666666665432 22 44444433311110 111222
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHH
Q 006076 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKA 375 (662)
Q Consensus 299 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 375 (662)
.+...|++++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|
T Consensus 152 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 152 NAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3455666777777777666653 34667788888889999999999998888753 5678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhH-HHHH------------HHHHhcCCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHH
Q 006076 376 IQIFKEMIYHGVSPSPIS-FVSV------------LGACSHAGLVEEGKMLFESMRKEHMIRPS-----VEHYACMVDLL 437 (662)
Q Consensus 376 ~~~~~~m~~~g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~ 437 (662)
+..|+++... .|+... +..+ ..+|.+.|++++|..+|+.+.+. .|+ ..++..+...+
T Consensus 231 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 231 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHH
Confidence 9999999874 555433 3333 77899999999999999999864 354 45889999999
Q ss_pred hhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH------------HHH
Q 006076 438 GRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA------------DVY 503 (662)
Q Consensus 438 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~ 503 (662)
.+.|++++|...++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++ +.|
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 9999999999999987 3344 7899999999999999999999999999999999999999988 456
Q ss_pred HhcC-----ChHHHHHHHHH
Q 006076 504 AAAD-----MWDEVKRVKRL 518 (662)
Q Consensus 504 ~~~g-----~~~~A~~~~~~ 518 (662)
...| +.+++.+.+++
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHH
T ss_pred HHhCCCccCCHHHHHHHHHH
Confidence 6666 55566666665
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=2.6e-20 Score=202.32 Aligned_cols=421 Identities=9% Similarity=-0.007 Sum_probs=237.1
Q ss_pred hHHHHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcC
Q 006076 52 KNELIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128 (662)
Q Consensus 52 ~~~li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 128 (662)
|..+...+.+.|++++|+..|+ ...+.+..++..+..++...|++++|.+.+..+++.. +.+...+..+...|.+.
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 3445555566666666666665 2223345555555555555666666666666655543 22444555555555555
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHH
Q 006076 129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE 208 (662)
Q Consensus 129 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~ 208 (662)
|++++|...|+.+ ..+....+..+..+...+...+|+..++.+....++..+.
T Consensus 107 g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~-------------------------- 159 (537)
T 3fp2_A 107 GNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ-------------------------- 159 (537)
T ss_dssp TCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------C--------------------------
T ss_pred CCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc--------------------------
Confidence 5555555555422 1122222222333334444445555555554321000000
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHh---HHHHHHHHHHH--------cCChhHHHHHHH
Q 006076 209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV---SWSAMIACYAR--------NGMAFEALELFR 277 (662)
Q Consensus 209 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~ 277 (662)
..|+ ...+..|....+.+.+...+......+.. .+..+...+.. .|++++|+.+|+
T Consensus 160 ---------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 160 ---------VLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp ---------CCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred ---------ccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 0111 12223333444445554444444333221 22222222111 235666666666
Q ss_pred HHhhhhCCCcCC--------HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 006076 278 EMIMESHDLCPN--------SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD 349 (662)
Q Consensus 278 ~m~~~~~~~~p~--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 349 (662)
++ ... .|+ ..++..+...+...|++++|...+..+++.. |+..++..+...|.+.|++++|...|+
T Consensus 227 ~~--l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 227 SL--LSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HH--HC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HH--HHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66 221 233 1234444455566667777777777776653 335666667777777777777777777
Q ss_pred hCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC
Q 006076 350 HMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS 426 (662)
Q Consensus 350 ~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 426 (662)
+.. ..+..+|..+...|...|++++|++.|++..... +.+..++..+...+...|++++|..+++.+.+.. +.+
T Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~ 377 (537)
T 3fp2_A 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTL 377 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 654 2345677777777777777777777777777642 2234567777777777788888888887776542 345
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhc----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 006076 427 VEHYACMVDLLGRANKLEEAAKIIEDL----R----IEPGPKVWGSLLGSCRIH----------CNVELAERASKRLFEL 488 (662)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~ 488 (662)
...+..+...|.+.|++++|...++++ + .......+..+...+... |++++|...++++++.
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 667777777788888888888777765 1 111222344445566666 8888888888888888
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 489 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
.|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 458 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 458 DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888877653
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=9.7e-20 Score=193.12 Aligned_cols=297 Identities=14% Similarity=0.064 Sum_probs=249.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHH
Q 006076 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS 295 (662)
Q Consensus 219 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ 295 (662)
+.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+..+|.+.|++++|+..|+++ ...+ +.+..++..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~~~~~ 99 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV--IQLK-MDFTAARLQ 99 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH--HhcC-CCcHHHHHH
Confidence 55677888889999999999999999988752 46788999999999999999999999988 3332 235677888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhCCCCch---hHHHHH------------HHHHHhcCChHHHHHHHhhCC---CCChh
Q 006076 296 VLQACAALAALEQGKMIHGYILRRGLDSIL---PVVSAL------------VTMYARCGKLELGQCVFDHMD---KRDVV 357 (662)
Q Consensus 296 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~~~~m~---~~~~~ 357 (662)
+..++...|++++|...++.+.+.. +.+. ..+..+ ...|.+.|++++|...|+++. ..+..
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 8888999999999999999888754 2233 455555 445899999999999999876 35778
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHH----
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM---- 433 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l---- 433 (662)
.|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+.. +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHH
Confidence 99999999999999999999999998853 4467889999999999999999999999998542 3344555554
Q ss_pred --------HHHHhhcCCHHHHHHHHHhc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076 434 --------VDLLGRANKLEEAAKIIEDL-RIEPG-----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499 (662)
Q Consensus 434 --------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (662)
...|.+.|++++|...|+++ ...|+ ...|..+...+...|++++|...++++++..|+++..+..+
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 88999999999999999988 33454 44788889999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 006076 500 ADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
+.+|...|++++|...+++..+.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999864
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=5.4e-17 Score=165.90 Aligned_cols=303 Identities=13% Similarity=0.058 Sum_probs=184.1
Q ss_pred hHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHH
Q 006076 185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIA 261 (662)
Q Consensus 185 t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 261 (662)
.+..+-..+...++ +++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+..
T Consensus 5 ~~~~~~~~~~~~g~----~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 5 KHLELGKKLLAAGQ----LADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHTTC----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC----HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34444455555555 666666666665543 33455555566666666666666666655431 24455555666
Q ss_pred HHHHcCChhHHHHHHHHHhhhhCCCcC---C-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006076 262 CYARNGMAFEALELFREMIMESHDLCP---N-SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337 (662)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m~~~~~~~~p---~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 337 (662)
.|.+.|++++|+..|++. ... .| + ...+..+... .. ...+..+...|..
T Consensus 80 ~~~~~~~~~~A~~~~~~~--~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKV--LKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHTCHHHHHHHHHHH--HTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHH--Hhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHH
Confidence 666666666666666655 221 23 1 1111111000 00 0011122456666
Q ss_pred cCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076 338 CGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF 414 (662)
Q Consensus 338 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (662)
.|++++|.+.|+++. ..+...|..+...|...|++++|+..++++.... +.+..++..+...+...|++++|...+
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776654 2355566677777777777777777777776642 234556666666777777777777777
Q ss_pred HHhHHhcCCCCChHHHH------------HHHHHHhhcCCHHHHHHHHHhc-CCCCC-H----HHHHHHHHHHHhcCCHH
Q 006076 415 ESMRKEHMIRPSVEHYA------------CMVDLLGRANKLEEAAKIIEDL-RIEPG-P----KVWGSLLGSCRIHCNVE 476 (662)
Q Consensus 415 ~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~ 476 (662)
+...+.. +.+...+. .+...+.+.|++++|...++++ ...|+ . ..|..+...+...|+++
T Consensus 212 ~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 212 RECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence 7766432 22222222 3366678888888888888876 22333 2 22445667788888888
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 477 LAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
+|...++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888888888888887753
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=1.5e-16 Score=162.49 Aligned_cols=320 Identities=11% Similarity=0.016 Sum_probs=223.9
Q ss_pred chHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCC-ChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHH
Q 006076 147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS-DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225 (662)
Q Consensus 147 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 225 (662)
..|..+...+...|+ -.+......+.- ...| +..++..+...+...++ +++|...+..+++.. +.+..++
T Consensus 4 ~~~~~~~~~~~~~g~---~~~A~~~~~~~l-~~~p~~~~~~~~~a~~~~~~~~----~~~A~~~~~~~~~~~-~~~~~~~ 74 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQ---LADALSQFHAAV-DGDPDNYIAYYRRATVFLAMGK----SKAALPDLTKVIALK-MDFTAAR 74 (359)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHH-hhCcccHHHHHHHHHHHHHccC----HHHHHHHHHHHHHhC-CCcchHH
Confidence 345555555555542 223333332210 2334 46677788888888899 999999999999885 5567899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCCC------CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHH
Q 006076 226 TTLIDMYARFGCVMYAGFVFSQMAVK------NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299 (662)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a 299 (662)
..+...|.+.|++++|...|++..+. +...|..+...+. ...+......
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~ 129 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------------MQRLRSQALD 129 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHH
Confidence 99999999999999999999987543 2333443321100 0011222334
Q ss_pred HHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHH
Q 006076 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAI 376 (662)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 376 (662)
+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|...|++++|.
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 455566666666666665553 23456667777777777777777777776543 35667778888888888888888
Q ss_pred HHHHHHHHcCCCCCH-hHHH------------HHHHHHhcCCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHhh
Q 006076 377 QIFKEMIYHGVSPSP-ISFV------------SVLGACSHAGLVEEGKMLFESMRKEHMIRPSV----EHYACMVDLLGR 439 (662)
Q Consensus 377 ~~~~~m~~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~ 439 (662)
..|++..+. .|+. ..+. .+...+.+.|++++|...++.+.+.. +.+. ..+..+...|.+
T Consensus 209 ~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 209 SEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHH
Confidence 888888774 3433 2222 23556888999999999999987643 2223 335568889999
Q ss_pred cCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 006076 440 ANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505 (662)
Q Consensus 440 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (662)
.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..|..++..
T Consensus 285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999987 3344 788999999999999999999999999999999998888877776653
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.80 E-value=7.5e-18 Score=182.86 Aligned_cols=359 Identities=11% Similarity=0.023 Sum_probs=262.8
Q ss_pred cchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHH
Q 006076 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225 (662)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 225 (662)
...|..+...+.+.|++++|++.|+++... -+.+..++..+..++...++ +++|.+.+..+++.. +.+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~-p~~~~~~ 96 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL---DPNEPVFYSNISACYISTGD----LEKVIEFTTKALEIK-PDHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcC-CchHHHH
Confidence 346777778888888899999998888865 23456677778888888888 889999888888875 5567888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhh----CCCcCCHHHHHHHHHHHH
Q 006076 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES----HDLCPNSVTMVSVLQACA 301 (662)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~p~~~t~~~ll~a~~ 301 (662)
..+...|.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++.... ....|+...+.. +.
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~ 171 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FF 171 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HH
Confidence 888999999999999999997443 233333344556666667788888888873111 122344433333 33
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHh--------cCChHHHHHHHhhCCC--CC--------hhHHHHH
Q 006076 302 ALAALEQGKMIHGYILRRGLDSI-LPVVSALVTMYAR--------CGKLELGQCVFDHMDK--RD--------VVSWNSL 362 (662)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~--------~g~~~~A~~~~~~m~~--~~--------~~~~~~l 362 (662)
...+.+.+...+..... ..+. ......+...|.. .|++++|..+|+++.+ |+ ..+|..+
T Consensus 172 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249 (537)
T ss_dssp HTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHH
Confidence 33333333222211110 1111 1133333333322 2578899999988764 33 2357777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006076 363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442 (662)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 442 (662)
...+...|++++|+..|+++... .|+..++..+...+...|++++|...++.+.+.. +.+...+..+...|...|+
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCC
Confidence 78889999999999999999984 6778888889999999999999999999998653 4568899999999999999
Q ss_pred HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 443 LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 443 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
+++|.+.++++ ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999987 2233 578899999999999999999999999999999999999999999999999999999999987
Q ss_pred hCC
Q 006076 521 ARG 523 (662)
Q Consensus 521 ~~~ 523 (662)
+..
T Consensus 406 ~~~ 408 (537)
T 3fp2_A 406 RLE 408 (537)
T ss_dssp HHH
T ss_pred HcC
Confidence 643
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1e-16 Score=161.87 Aligned_cols=287 Identities=10% Similarity=-0.007 Sum_probs=222.4
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHH
Q 006076 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294 (662)
Q Consensus 218 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~ 294 (662)
.+.+..++..+...+...|++++|.++|+++.. .+...+..++..+.+.|++++|+.++.++. ... +.+...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV--DLY-PSNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH--HHC-TTSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHH--HhC-cCCHHHHH
Confidence 355666777788888888999999998888743 245567777888888899999999998883 322 23456777
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcC
Q 006076 295 SVLQACAALA-ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHG 370 (662)
Q Consensus 295 ~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 370 (662)
.+...+...| ++++|...++.+++.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 7777888888 8888998888888764 33567788888889999999999988887752 34567777888888999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHhhcCCH
Q 006076 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM-------IRPSVEHYACMVDLLGRANKL 443 (662)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~ 443 (662)
++++|++.|++..+.. +.+..++..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999888742 33457788888888899999999999888875321 133467888899999999999
Q ss_pred HHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HhcCCh
Q 006076 444 EEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY-AAADMW 509 (662)
Q Consensus 444 ~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 509 (662)
++|...+++. .. +.+...|..+...+...|++++|...+++++++.|+++..+..++.++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999988876 22 336778888888899999999999999999999998888888888888 445554
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.2e-17 Score=167.21 Aligned_cols=321 Identities=16% Similarity=0.101 Sum_probs=151.5
Q ss_pred cCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHH
Q 006076 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206 (662)
Q Consensus 127 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a 206 (662)
+.|++++|.+++++++.++ +|..|..++.+.|++++|++.|.+. +|..+|..+..++...+. +++|
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~----~EeA 80 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGN----WEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCC----HHHH
Confidence 6788999999999996654 9999999999999999999999642 466789999999998888 9999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCC
Q 006076 207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286 (662)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 286 (662)
...+....+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 9988877774 55678899999999999999999988864 67789999999999999999999999976
Q ss_pred cCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH
Q 006076 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY 366 (662)
Q Consensus 287 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 366 (662)
..|..+..++.++|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Y 217 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYY 217 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHH
Confidence 26889999999999999999999987 378899999999999999999988777655 3444455689999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc--CCCHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHh
Q 006076 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH--AGLVEEGKMLFESMRKEHMIRP------SVEHYACMVDLLG 438 (662)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~ 438 (662)
.+.|++++|+.+++...... +-....|+-+.-++++ .+++.+..+.|. ++-+++| +...|.-++..|.
T Consensus 218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887532 2233455555444544 455556666554 3334555 4678999999999
Q ss_pred hcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076 439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP 490 (662)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (662)
.-++++.|...+-+-+ |+..--..+.....+..+.|.--++..-.++..|
T Consensus 294 ~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 294 KYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp HTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred hhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 9999999988765543 2322222333444445555544444444444443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=4.3e-15 Score=159.21 Aligned_cols=365 Identities=10% Similarity=-0.039 Sum_probs=267.7
Q ss_pred ChhHHHHHHHHhhc----CCChHHHHHHHhcCCC-CCcchHHHHHHHHHh----cCCccHHHHHHHHHhhCCCCCCCChh
Q 006076 114 DPFLVTKLINVYSH----FDSVDDARHVFDKTRR-RTIYVWNALFRALTL----AGRGEEVLELYRRMNGTGTGIRSDRF 184 (662)
Q Consensus 114 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~g~~p~~~ 184 (662)
++.....|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|++.|++..+. | +..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~---~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G---LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C---CHH
Confidence 45555556666665 6677777777765433 355566666666666 67777777777777665 3 334
Q ss_pred hHHHHHHHHHh----CCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHcCCC-CCHhH
Q 006076 185 TYTYVLKACVA----SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR----FGCVMYAGFVFSQMAV-KNVVS 255 (662)
Q Consensus 185 t~~~ll~~~~~----~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~ 255 (662)
.+..+-..+.. .++ .++|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~----~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a 185 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVD----KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWS 185 (490)
T ss_dssp HHHHHHHHHHHTSSSCCC----HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 44445555555 445 778888887777665 45566677777776 6788888888877643 46777
Q ss_pred HHHHHHHHHH----cCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCchhH
Q 006076 256 WSAMIACYAR----NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA----LAALEQGKMIHGYILRRGLDSILPV 327 (662)
Q Consensus 256 ~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~ 327 (662)
+..+...|.+ .++.++|++.|++. ...+ +...+..+...+.. .++.++|...++...+.| +...
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a--~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKS--ATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHH--HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 8888888877 78888888888877 4444 45556666666654 678888888888887764 4567
Q ss_pred HHHHHHHHHh----cCChHHHHHHHhhCCC-CChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 006076 328 VSALVTMYAR----CGKLELGQCVFDHMDK-RDVVSWNSLISSYGVH-----GYGGKAIQIFKEMIYHGVSPSPISFVSV 397 (662)
Q Consensus 328 ~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~l 397 (662)
+..|..+|.. .++.++|...|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 7778888887 8899999999988764 4666788888888877 89999999999998865 44566667
Q ss_pred HHHHhcCC---CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006076 398 LGACSHAG---LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR----ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR 470 (662)
Q Consensus 398 l~a~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 470 (662)
...+...| +.++|.++|+...+. .++..+..|..+|.. .+++++|.+.|++.--..++..+..|...|.
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYY 410 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 77776656 788999999988753 467888889999988 8999999999998732346778888888888
Q ss_pred h----cCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHh
Q 006076 471 I----HCNVELAERASKRLFELEPT---NAGNYVLLADVYAA 505 (662)
Q Consensus 471 ~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 505 (662)
. .++.++|...++++.+.+|+ ++.....|+.++..
T Consensus 411 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 411 YGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 7 89999999999999998854 66666666666553
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=7.9e-15 Score=158.82 Aligned_cols=394 Identities=11% Similarity=0.060 Sum_probs=242.4
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHH
Q 006076 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRR---TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL 190 (662)
Q Consensus 114 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll 190 (662)
+...|..++. +.+.|++++|..+|+++... +...|..++..+.+.|++++|.++|++.+.. .|+...+...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~----~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK----VLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT----CCCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCChHHHHHHH
Confidence 3444555554 24455555555555544331 3344555555555555555555555555543 23433333332
Q ss_pred HHH-HhCCCCccchHHHH----HHHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCCHHHHHHHHHcCCC-CC-
Q 006076 191 KAC-VASSCGFSLLKHGK----EIHASVLRH-GYNG-IVHIMTTLIDMYAR---------FGCVMYAGFVFSQMAV-KN- 252 (662)
Q Consensus 191 ~~~-~~~~~~~~~~~~a~----~~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~f~~~~~-~~- 252 (662)
... ...++ .+.++ ++++..+.. |..| +..+|...+....+ .|+++.|.++|++... |+
T Consensus 87 ~~~~~~~~~----~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 87 SYVRETKGK----LPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHTTT----STTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHccc----hhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 211 12233 33332 244444332 3322 34455555554443 4566666666666432 21
Q ss_pred --HhHHHHHHHHH-------------HHcCChhHHHHHHHHHhh----hhC---CCcCCH--------HHHHHHHHHHHc
Q 006076 253 --VVSWSAMIACY-------------ARNGMAFEALELFREMIM----ESH---DLCPNS--------VTMVSVLQACAA 302 (662)
Q Consensus 253 --~~~~~~li~~~-------------~~~g~~~~A~~~~~~m~~----~~~---~~~p~~--------~t~~~ll~a~~~ 302 (662)
...|....... .+.+++.+|..++.++.. ... .++|+. ..|...+.....
T Consensus 163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 12232221110 123456667766665210 111 134431 233333322221
Q ss_pred ----cCCH----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCChH-------HHHHHHhhCCC---C-Ch
Q 006076 303 ----LAAL----EQGKMIHGYILRRGLDSILPVVSALVTMYAR-------CGKLE-------LGQCVFDHMDK---R-DV 356 (662)
Q Consensus 303 ----~~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~m~~---~-~~ 356 (662)
.++. +.+..+++.++... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +.
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred CCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 1222 36677888888763 4467788888888876 69987 89999997763 4 57
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 434 (662)
..|..++..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|+++|+...+.. +.+...|...+
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a 397 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHH
Confidence 7899999999999999999999999998 56653 478888888888999999999999987532 22334443333
Q ss_pred HH-HhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----hHHHHHHHHHhcC
Q 006076 435 DL-LGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG----NYVLLADVYAAAD 507 (662)
Q Consensus 435 ~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g 507 (662)
.+ +...|+.++|..+|++. ...| +...|..++..+...|+.++|..++++++...|.++. .+...+......|
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 22 34689999999999976 3234 6788999999999999999999999999998776655 6777788888899
Q ss_pred ChHHHHHHHHHHHh
Q 006076 508 MWDEVKRVKRLLEA 521 (662)
Q Consensus 508 ~~~~A~~~~~~m~~ 521 (662)
+.+.+.++.+++.+
T Consensus 478 ~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 478 DLASILKVEKRRFT 491 (530)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988875
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=4.1e-16 Score=157.44 Aligned_cols=264 Identities=11% Similarity=-0.012 Sum_probs=226.9
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHH
Q 006076 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330 (662)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 330 (662)
.+...+..+...+...|++++|+++|+++. ... +.+...+..+...+...|++++|..++..+++.. +.+..++..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVM--EKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 356677888889999999999999999984 322 2344566667788899999999999999999875 446778899
Q ss_pred HHHHHHhcC-ChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCC
Q 006076 331 LVTMYARCG-KLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406 (662)
Q Consensus 331 li~~y~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (662)
+...|...| ++++|...|++..+ .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 999999999 99999999998753 456789999999999999999999999999853 2345677778889999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC-C----------CCCHHHHHHHHHHHHhcCCH
Q 006076 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR-I----------EPGPKVWGSLLGSCRIHCNV 475 (662)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~----------~p~~~~~~~ll~~~~~~g~~ 475 (662)
+++|.+.++...+.. +.+...+..+...|.+.|++++|...+++.- . +.+..+|..+...+...|++
T Consensus 175 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999997542 4568899999999999999999999998761 1 33467899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999987664
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=2e-16 Score=162.53 Aligned_cols=279 Identities=9% Similarity=-0.076 Sum_probs=220.1
Q ss_pred HhcCCHHHHHH-HHHcCCC---C----CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccC
Q 006076 233 ARFGCVMYAGF-VFSQMAV---K----NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304 (662)
Q Consensus 233 ~~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~ 304 (662)
.-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++ .... +.+..++..+..++...|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAA--VQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHH--HHSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHHCc
Confidence 34578888888 8875532 1 3456888889999999999999999988 4332 345677888888889999
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHH---------------HHHHH
Q 006076 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-DVVSWNS---------------LISSY 366 (662)
Q Consensus 305 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~---------------li~~~ 366 (662)
++++|...++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+ | +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999999998875 44678888999999999999999999987753 2 2222221 23334
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006076 367 GVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445 (662)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 445 (662)
...|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999999853221 47888999999999999999999999998643 4468899999999999999999
Q ss_pred HHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCChHHH
Q 006076 446 AAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN-----------AGNYVLLADVYAAADMWDEV 512 (662)
Q Consensus 446 A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 512 (662)
|...++++ ... .+..+|..+...+...|++++|...+++++++.|++ ..+|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 333 467889999999999999999999999999988877 78899999999999999999
Q ss_pred HHHHH
Q 006076 513 KRVKR 517 (662)
Q Consensus 513 ~~~~~ 517 (662)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 99876
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=6.2e-17 Score=163.92 Aligned_cols=289 Identities=8% Similarity=0.047 Sum_probs=123.4
Q ss_pred hhhhccCCCchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCCHhhHHHHHHHHhcCCChHH
Q 006076 19 TNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSD 98 (662)
Q Consensus 19 ~~li~~y~~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 98 (662)
+.||..-.++++|..+| +.+++++ .| ..+..++.+.|++++|++.|.. .+|..+|..++.++...|++++
T Consensus 10 ~~ll~~~~~ld~A~~fa-e~~~~~~--vW-----s~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFA-ERCNEPA--VW-----SQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHH-HhCCChH--HH-----HHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHH
Confidence 44555444799999999 8986654 44 4599999999999999999985 3677799999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCC
Q 006076 99 ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178 (662)
Q Consensus 99 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g 178 (662)
|...+....+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp -------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 99988887774 56688899999999999999999988864 67789999999999999999999999976
Q ss_pred CCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHH
Q 006076 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA 258 (662)
Q Consensus 179 ~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 258 (662)
..|..+..++.+.++ ++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....
T Consensus 149 -----~n~~~LA~~L~~Lg~----yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGE----YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTC----HHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhcc----HHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHH
Confidence 258889999999999 99998888876 367889999999999999999988777655 34444556
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHhCCCC------chhHHHH
Q 006076 259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA--ALAALEQGKMIHGYILRRGLDS------ILPVVSA 330 (662)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~ 330 (662)
++..|.+.|++++|+.+++... ... +-....|+-+--+++ +.+++.+..+.|.. +.+++| +...|.-
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL--~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAAL--GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT--TST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHh--CCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHH
Confidence 8888999999999999998762 222 223334444433333 34455555554431 112222 3556777
Q ss_pred HHHHHHhcCChHHHHHHHh
Q 006076 331 LVTMYARCGKLELGQCVFD 349 (662)
Q Consensus 331 li~~y~~~g~~~~A~~~~~ 349 (662)
++-.|.+-++++.|....-
T Consensus 288 ~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHHH
Confidence 7778888888887766443
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=1.1e-13 Score=155.79 Aligned_cols=436 Identities=12% Similarity=0.061 Sum_probs=304.1
Q ss_pred cchhhhccCC-CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCC--------HhhHHHHH
Q 006076 17 YHTNSIAHLP-PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPT--------QHTYELLL 87 (662)
Q Consensus 17 ~~~~li~~y~-~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~--------~~~~~~ll 87 (662)
++|+|...|- +=..+.+++ .+-+.-|+ .++.-||...++.-|.-.|++|..-+ ...|-...
T Consensus 875 ~hnalakiyid~n~npe~fL-~~n~~yd~---------~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~a 944 (1630)
T 1xi4_A 875 THNALAKIYIDSNNNPERFL-RENPYYDS---------RVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLS 944 (1630)
T ss_pred HHHHHHHHHhccCCCHHHHh-hccCcccH---------HHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHH
Confidence 8999999998 556677776 44333222 25667777777777666665332211 01111122
Q ss_pred HHHhcCCChH-----------HHHHHHHHHHHhCC--CCChhHHHHHHHHhhcCCChHHHHHHHhcCCCC------Ccch
Q 006076 88 LSCTHHNSLS-----------DALNVHSHLTDNGF--DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR------TIYV 148 (662)
Q Consensus 88 ~~~~~~~~~~-----------~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~ 148 (662)
+-+.+..+.+ -=+++.++.....+ ..++.--...+..|...|.+.+|.++++++.-. +...
T Consensus 945 rylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~L 1024 (1630)
T 1xi4_A 945 RYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNL 1024 (1630)
T ss_pred HHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHH
Confidence 2222222221 11223333222221 223333455677777888888888888776522 2245
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 006076 149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228 (662)
Q Consensus 149 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 228 (662)
-|.++.+..+. +..+..+...+.... + ..-+-..|...+. +++|.++++... ......+.+
T Consensus 1025 qnlLi~tAIka-D~~Rv~eyI~kLd~~------d---~~eIA~Iai~lgl----yEEAf~IYkKa~-----~~~~A~~VL 1085 (1630)
T 1xi4_A 1025 QNLLILTAIKA-DRTRVMEYINRLDNY------D---APDIANIAISNEL----FEEAFAIFRKFD-----VNTSAVQVL 1085 (1630)
T ss_pred HHHHHHHHHHh-ChhhHHHHHHHhhhc------c---HHHHHHHHHhCCC----HHHHHHHHHHcC-----CHHHHHHHH
Confidence 56666666666 455655555554321 1 2334455666676 888888887742 112222333
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHH
Q 006076 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ 308 (662)
Q Consensus 229 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~ 308 (662)
+-..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -|...|..+..+|.+.|++++
T Consensus 1086 ---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1086 ---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred ---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHH
Confidence 237788999999988774 4678999999999999999999999643 367788889999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006076 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS 388 (662)
Q Consensus 309 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 388 (662)
+.+++....+.. ++..+.+.++.+|++.+++++..... ..++...|..+...|...|++++|..+|...
T Consensus 1153 AIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------ 1221 (1630)
T 1xi4_A 1153 LVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 1221 (1630)
T ss_pred HHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------
Confidence 999999888765 44444556999999999998655543 4667778888999999999999999999984
Q ss_pred CCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006076 389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468 (662)
Q Consensus 389 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 468 (662)
..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|....... ..++..+..++..
T Consensus 1222 ---~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~y 1289 (1630)
T 1xi4_A 1222 ---SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINY 1289 (1630)
T ss_pred ---hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHH
Confidence 47889999999999999999998866 34688888999999999999999877653 3455566788999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc--CChHHHHHHHH
Q 006076 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA--DMWDEVKRVKR 517 (662)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 517 (662)
|...|.+++|+.+++..++++|.....|.-|+.+|++- ++..|+.+.|.
T Consensus 1290 Ye~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1290 YQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999988888888888888764 46666666665
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=4.3e-14 Score=152.99 Aligned_cols=403 Identities=11% Similarity=0.052 Sum_probs=274.9
Q ss_pred CHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC--CCcchHHHHHHHH
Q 006076 79 TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR--RTIYVWNALFRAL 156 (662)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~ 156 (662)
|...|..++.. .+.|+++.|+.+++.+++.- +.+...|..++..+.+.|++++|.++|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 55667767763 56677888888888877652 44566777788888888888888888877654 4555666666422
Q ss_pred -HhcCCccHHHH----HHHHHhhCCCCCCCC-hhhHHHHHHHHHhCC-----CCccchHHHHHHHHHHHHhCCCCchhHH
Q 006076 157 -TLAGRGEEVLE----LYRRMNGTGTGIRSD-RFTYTYVLKACVASS-----CGFSLLKHGKEIHASVLRHGYNGIVHIM 225 (662)
Q Consensus 157 -~~~g~~~~A~~----l~~~m~~~~~g~~p~-~~t~~~ll~~~~~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 225 (662)
...|+.++|.+ +|++....- |..|+ ...|...+....... ...+.++.++.++...++....+....|
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~-g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKI-GMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHT-TTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 34567766655 666654421 44443 334444444332210 0022388999999998873211222344
Q ss_pred HHHHHHH-------------HhcCCHHHHHHHHHc-------CC------CCC--------HhHHHHHHHHHHHc----C
Q 006076 226 TTLIDMY-------------ARFGCVMYAGFVFSQ-------MA------VKN--------VVSWSAMIACYARN----G 267 (662)
Q Consensus 226 ~~li~~y-------------~~~g~~~~A~~~f~~-------~~------~~~--------~~~~~~li~~~~~~----g 267 (662)
....... .+.++++.|..++.. +. .|+ ...|...+.....+ +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 4333221 134567777776654 11 111 34676666443332 2
Q ss_pred Ch----hHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHHhCCCCchhHHH
Q 006076 268 MA----FEALELFREMIMESHDLCPNSVTMVSVLQACAA-------LAALE-------QGKMIHGYILRRGLDSILPVVS 329 (662)
Q Consensus 268 ~~----~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~ 329 (662)
+. ++|+.+|++.. .. .+-+...|......+.+ .|+++ +|..+++.+++.-.+.+...+.
T Consensus 249 ~~~~~~~~a~~~y~~al--~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCL--LV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSHHHHHHHHHHHHHHH--HH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred cchhHHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 22 37788898884 22 12355666666666654 68887 8999999998632345688999
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--CC-h-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHH-Hhc
Q 006076 330 ALVTMYARCGKLELGQCVFDHMDK--RD-V-VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGA-CSH 403 (662)
Q Consensus 330 ~li~~y~~~g~~~~A~~~~~~m~~--~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a-~~~ 403 (662)
.++..+.+.|++++|..+|+++.+ |+ . ..|...+..+.+.|+.++|.++|++..+. .|+ ...|...... +..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHH
Confidence 999999999999999999998763 43 3 48999999999999999999999999874 343 3333332222 336
Q ss_pred CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhcCCHHH
Q 006076 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL----RIEPG--PKVWGSLLGSCRIHCNVEL 477 (662)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~ 477 (662)
.|++++|..+|+...+.. +.++..|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.
T Consensus 404 ~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred cCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 899999999999998753 446889999999999999999999999987 22332 4589999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 006076 478 AERASKRLFELEPT 491 (662)
Q Consensus 478 a~~~~~~~~~~~p~ 491 (662)
+..+.+++.+..|+
T Consensus 482 ~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 482 ILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHCch
Confidence 99999999998875
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=3.8e-16 Score=160.51 Aligned_cols=261 Identities=11% Similarity=-0.053 Sum_probs=211.9
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006076 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331 (662)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 331 (662)
+...|..+...+.+.|++++|++.|+++. ... +.+..++..+...+...|++++|...++.+++.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al--~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAI--LQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHH--HhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 45568889999999999999999999884 322 3467788888889999999999999999998875 3457889999
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CC-----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHhHHHHH
Q 006076 332 VTMYARCGKLELGQCVFDHMDK--RD-----------VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PSPISFVSV 397 (662)
Q Consensus 332 i~~y~~~g~~~~A~~~~~~m~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~l 397 (662)
...|.+.|++++|...|+++.+ |+ ...+..+...|...|++++|++.|+++...... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998763 21 223445688899999999999999999985322 157889999
Q ss_pred HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCH
Q 006076 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNV 475 (662)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 475 (662)
...+...|++++|...|+.+.+.. +.+...+..+...|.+.|++++|...|+++ ...| +..+|..+...|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999998653 456889999999999999999999999987 3344 588899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076 476 ELAERASKRLFELEPT------------NAGNYVLLADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 476 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (662)
++|...+++++++.|+ +...+..|+.++...|+.+.+.++.+.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999988766 367889999999999999999887654
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=8.3e-15 Score=144.97 Aligned_cols=270 Identities=8% Similarity=-0.016 Sum_probs=217.3
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCH----hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCH
Q 006076 231 MYARFGCVMYAGFVFSQMAVKNV----VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL 306 (662)
Q Consensus 231 ~y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~ 306 (662)
-....|++..|...++.....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP------SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc------cCChhHHHHHHHHHHHcCCCcH
Confidence 34557999999999988765432 3456678899999999999875542 2356777888888889999999
Q ss_pred HHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006076 307 EQGKMIHGYILRRGLDS-ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385 (662)
Q Consensus 307 ~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (662)
+.|.+.++.++..+..| +...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|+.++|.+.|+++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 99999999998877544 567778888999999999999999998 567889999999999999999999999999985
Q ss_pred CCCCCHhHH---HHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHH
Q 006076 386 GVSPSPISF---VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPK 460 (662)
Q Consensus 386 g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~ 460 (662)
.|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..+|.+.|++++|...+++. ...| ++.
T Consensus 160 --~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 --DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp --CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4665321 123344456699999999999998763 668899999999999999999999999986 3344 778
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 006076 461 VWGSLLGSCRIHCNVEL-AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516 (662)
Q Consensus 461 ~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (662)
+|..++..+...|+.++ +..+++++++++|+++.+ .+...+.+.++++..-|
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 89999999999999876 678999999999998654 45566666666665443
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=1.2e-13 Score=155.44 Aligned_cols=383 Identities=10% Similarity=0.051 Sum_probs=295.7
Q ss_pred CHhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHH
Q 006076 79 TQHTYELLLLSCTHHNSLSDALNVHSHLTDNG--FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL 156 (662)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 156 (662)
++.--+..++++...|.+.++.++++.++..+ +.-+....+.|+.+..+. +..+..+..++...-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 33444667788889999999999999998432 123456677787777776 5566666665555333 45577888
Q ss_pred HhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006076 157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG 236 (662)
Q Consensus 157 ~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 236 (662)
...|++++|.++|++... .....+.++. ..++ +++|.++...+ .+..+|..+..++.+.|
T Consensus 1060 i~lglyEEAf~IYkKa~~-------~~~A~~VLie---~i~n----ldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV-------NTSAVQVLIE---HIGN----LDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC-------HHHHHHHHHH---HHhh----HHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 899999999999998631 1222333443 3445 88888887754 34788999999999999
Q ss_pred CHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006076 237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316 (662)
Q Consensus 237 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 316 (662)
++++|.+.|.+. .|...|..++.++.+.|++++|+++|... +... ++....+.+..+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mA--rk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMA--RKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHH--Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 999999999775 67788999999999999999999999876 4333 44333445888899999988655443
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHH
Q 006076 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396 (662)
Q Consensus 317 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 396 (662)
+ .++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. .+..+|..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 2 345567778999999999999999999985 59999999999999999999999976 35689999
Q ss_pred HHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc--
Q 006076 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH-- 472 (662)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-- 472 (662)
+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. ++.| ....|.-|...+++.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 999999999999998876543 356778889999999999999999999776 4444 345666666666654
Q ss_pred CCHHHHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCChHHHHHH
Q 006076 473 CNVELAERASKRLFELEP-----TNAGNYVLLADVYAAADMWDEVKRV 515 (662)
Q Consensus 473 g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (662)
++..++.+.|..-..+.| .++..|.-++-+|.+.|+|+.|..+
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 566677777776666555 4667889999999999999999853
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=1.5e-15 Score=155.99 Aligned_cols=295 Identities=10% Similarity=0.022 Sum_probs=153.6
Q ss_pred cCCccHHHH-HHHHHhhCCCCCCC--ChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006076 159 AGRGEEVLE-LYRRMNGTGTGIRS--DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF 235 (662)
Q Consensus 159 ~g~~~~A~~-l~~~m~~~~~g~~p--~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 235 (662)
.|++++|++ .|.+..... .-.| +...+..+...+...++ +++|...+..+++.. +.+..++..+...|.+.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~g~----~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFE-EENPLRDHPQPFEEGLRRLQEGD----LPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp --------CHHHHCCCCCC-SSCTTTTCSSHHHHHHHHHHTTC----HHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhHHHhcC-CCCcccchHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 355666665 555443321 0111 23345555555555666 666666666666553 44556666777777777
Q ss_pred CCHHHHHHHHHcCC---CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHH-HHHHHHHHHHccCCHHHHHH
Q 006076 236 GCVMYAGFVFSQMA---VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV-TMVSVLQACAALAALEQGKM 311 (662)
Q Consensus 236 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~-t~~~ll~a~~~~~~~~~a~~ 311 (662)
|++++|...|+++. ..+..+|..+...|...|++++|++.|+++ .... |+.. .+...... ..
T Consensus 112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~--~~~~~~~~~~~~~-------~~--- 177 (368)
T 1fch_A 112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW--LRYT--PAYAHLVTPAEEG-------AG--- 177 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHTS--TTTGGGCC-----------------
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhC--cCcHHHHHHHHHH-------hh---
Confidence 77777777777653 235667777888888888888888888877 3322 2221 11110000 00
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006076 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R---DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386 (662)
Q Consensus 312 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 386 (662)
...+ ...+..+...+ +.|++++|...|+++.+ | +..+|..+...|...|++++|+..|+++....
T Consensus 178 --------~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 247 (368)
T 1fch_A 178 --------GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247 (368)
T ss_dssp -----------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --------hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 0000 00001111122 44555555555554431 2 24455556666666666666666666655531
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC--------
Q 006076 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-------- 457 (662)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------- 457 (662)
+.+..++..+...+...|++++|...|+.+.+.. +.+...+..+...|.+.|++++|...++++ ...|
T Consensus 248 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 248 -PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 2234555566666666666666666666665432 234556666666666666666666666554 1111
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006076 458 ----GPKVWGSLLGSCRIHCNVELAERASKRLF 486 (662)
Q Consensus 458 ----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (662)
...+|..+..++...|+.++|..++++.+
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 14667777777777777777766665443
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=1.2e-13 Score=147.87 Aligned_cols=352 Identities=10% Similarity=-0.056 Sum_probs=293.9
Q ss_pred CCCcchHHHHHHHHHh----cCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHh----CCCCccchHHHHHHHHHHH
Q 006076 143 RRTIYVWNALFRALTL----AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA----SSCGFSLLKHGKEIHASVL 214 (662)
Q Consensus 143 ~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~----~~~~~~~~~~a~~~~~~~~ 214 (662)
..++.++..+...|.. .+++++|+..|++..+. | +...+..+-..+.. .++ .++|.+.+....
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~~----~~~A~~~~~~a~ 106 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--G---YTPAEYVLGLRYMNGEGVPQD----YAQAVIWYKKAA 106 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCC----HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHH
Confidence 3467778888888887 89999999999999876 3 45566666666766 666 999999999998
Q ss_pred HhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHcCCCC-CHhHHHHHHHHHHH----cCChhHHHHHHHHHhhhhCC
Q 006076 215 RHGYNGIVHIMTTLIDMYAR----FGCVMYAGFVFSQMAVK-NVVSWSAMIACYAR----NGMAFEALELFREMIMESHD 285 (662)
Q Consensus 215 ~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~ 285 (662)
+.| +...+..|..+|.. .+++++|...|++..+. +..++..+...|.. .++.++|++.|++. ...+
T Consensus 107 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a--~~~~ 181 (490)
T 2xm6_A 107 LKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA--AEQG 181 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTT
T ss_pred HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH--HHCC
Confidence 876 56677788899988 88999999999987544 67788889888988 78999999999998 5544
Q ss_pred CcCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CCh
Q 006076 286 LCPNSVTMVSVLQACAA----LAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR----CGKLELGQCVFDHMDK-RDV 356 (662)
Q Consensus 286 ~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~ 356 (662)
+...+..+...+.. .++.++|...++...+.| +...+..|..+|.. .+++++|...|++..+ .+.
T Consensus 182 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 255 (490)
T 2xm6_A 182 ---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS 255 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH
T ss_pred ---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 66777777777776 799999999999999875 56788889999987 8999999999998764 567
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcC-----CCHHHHHHHHHHhHHhcCCCCCh
Q 006076 357 VSWNSLISSYGV----HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA-----GLVEEGKMLFESMRKEHMIRPSV 427 (662)
Q Consensus 357 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~~ 427 (662)
.++..+...|.. .++.++|++.|++..+.| +...+..+...+... +++++|...|+...+. .+.
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~ 328 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDA 328 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCH
Confidence 788888888888 899999999999998765 455666777777776 8999999999999753 356
Q ss_pred HHHHHHHHHHhhcC---CHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076 428 EHYACMVDLLGRAN---KLEEAAKIIEDLRIEPGPKVWGSLLGSCRI----HCNVELAERASKRLFELEPTNAGNYVLLA 500 (662)
Q Consensus 428 ~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (662)
..+..|..+|.+.| ++++|.+.|++.-...++..+..|...|.. .++.++|...++++.+.+ ++.++..|+
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg 406 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Confidence 77888888888767 889999999987324578889999999988 899999999999998865 478899999
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCC
Q 006076 501 DVYAA----ADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 501 ~~~~~----~g~~~~A~~~~~~m~~~~ 523 (662)
.+|.. .+++++|...+++..+.+
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99998 899999999999998765
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=6.7e-16 Score=158.67 Aligned_cols=231 Identities=11% Similarity=-0.018 Sum_probs=195.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHH
Q 006076 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISS 365 (662)
Q Consensus 289 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 365 (662)
+...+......+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|...|++..+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44558888889999999999999999999875 44688999999999999999999999998763 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-----------hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 006076 366 YGVHGYGGKAIQIFKEMIYHGVSPSP-----------ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434 (662)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 434 (662)
|...|++++|++.|+++.+. .|+. ..+..+...+...|++++|.++++.+.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 3432 2233457788999999999999999987542222688999999
Q ss_pred HHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHH
Q 006076 435 DLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512 (662)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (662)
..|.+.|++++|.+.++++ .. +.+..+|..+..+|...|++++|...++++++..|+++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 23 346889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 006076 513 KRVKRLLEAR 522 (662)
Q Consensus 513 ~~~~~~m~~~ 522 (662)
...+++..+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=3e-15 Score=150.76 Aligned_cols=256 Identities=8% Similarity=-0.090 Sum_probs=178.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006076 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335 (662)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 335 (662)
|..+...+.+.|++++|+.+|+++. ... +.+..++..+..++...|++++|...++.+.+.. +.+..++..+...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVC--QAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH--HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 4444445555555555555555542 111 1133444444444555555555555555555442 22344555555556
Q ss_pred HhcCChHHHHHHHhhCCC--C-ChhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 006076 336 ARCGKLELGQCVFDHMDK--R-DVVSWNSL--------------IS-SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397 (662)
Q Consensus 336 ~~~g~~~~A~~~~~~m~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 397 (662)
...|++++|.+.|+++.+ | +...+..+ .. .+...|++++|++.++++.+.. +.+..++..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 666666666655555431 1 11222222 22 3777889999999999998853 3366788888
Q ss_pred HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCH
Q 006076 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNV 475 (662)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~ 475 (662)
...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...++++ ... .+..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 999999999999999999997643 446788999999999999999999999987 333 4678899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076 476 ELAERASKRLFELEPT------------NAGNYVLLADVYAAADMWDEVKRVKRL 518 (662)
Q Consensus 476 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (662)
++|...++++++..|+ ++..+..++.+|.+.|++++|..++++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999998 678999999999999999999998864
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=8.1e-14 Score=148.45 Aligned_cols=366 Identities=12% Similarity=0.008 Sum_probs=240.5
Q ss_pred cchHHHHHHHHHhcCCccHHHHHHHHHhhC-----CCCCCC-ChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhC--
Q 006076 146 IYVWNALFRALTLAGRGEEVLELYRRMNGT-----GTGIRS-DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG-- 217 (662)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g-- 217 (662)
...||.|...+...|++++|++.|++..+. +....| ...+|..+-..+...|+ +++|...+..+++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~----~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR----LSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHhHh
Confidence 346777777777777777777777765431 001223 34578888889999999 999999998877641
Q ss_pred ----CC-CchhHHHHHHHHHHhc--CCHHHHHHHHHcCC--CC-CHhHHHHHHHH---HHHcCChhHHHHHHHHHhhhhC
Q 006076 218 ----YN-GIVHIMTTLIDMYARF--GCVMYAGFVFSQMA--VK-NVVSWSAMIAC---YARNGMAFEALELFREMIMESH 284 (662)
Q Consensus 218 ----~~-~~~~~~~~li~~y~~~--g~~~~A~~~f~~~~--~~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~ 284 (662)
.. ....+++.+..++.+. +++++|...|++.. .| ++..+..+... +...++.++|++.|++.. ..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al--~l 204 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI--RL 204 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH--HH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh--hc
Confidence 11 1245666665566655 46899999999874 23 55566655544 445678899999998773 22
Q ss_pred CCcC-CHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-Ch
Q 006076 285 DLCP-NSVTMVSVLQACAA----LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-DV 356 (662)
Q Consensus 285 ~~~p-~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~ 356 (662)
.| +..++..+...+.. .++.++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|++..+ | +.
T Consensus 205 --~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 205 --NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp --CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred --CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence 34 44555555444443 467889999999988875 44677888999999999999999999998763 3 45
Q ss_pred hHHHHHHHHHHhc-------------------CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHh
Q 006076 357 VSWNSLISSYGVH-------------------GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417 (662)
Q Consensus 357 ~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 417 (662)
.+|..+...|... +..++|+..|++..... +.+..++..+...+...|++++|...|+..
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 5777776665432 33567888888887743 234467788888999999999999999998
Q ss_pred HHhcCCCCChH----HHHHHHH-HHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076 418 RKEHMIRPSVE----HYACMVD-LLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 418 ~~~~~~~~~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (662)
.+. .|+.. .+..+.. .+...|+.++|+..|++. .+.|+...+... ...+..++++.++.+|+
T Consensus 361 L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~ 428 (472)
T 4g1t_A 361 FSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGA 428 (472)
T ss_dssp HHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-
T ss_pred Hhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCC
Confidence 753 34332 2333333 235779999999999876 566765544333 34456778888899999
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEE
Q 006076 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI 533 (662)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 533 (662)
++.+|..|+.+|...|++++|.+.+++..+.+-..+...+|+
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999999888765544455664
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=8.1e-15 Score=145.05 Aligned_cols=246 Identities=11% Similarity=0.031 Sum_probs=202.0
Q ss_pred HHHHHHcCChhHHHHHHHHHhhhhCCCcCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006076 260 IACYARNGMAFEALELFREMIMESHDLCPNS--VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR 337 (662)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 337 (662)
|.-....|++..|+..++.. . ...|+. .....+..++...|+++.|...++. .-+|+..++..+...|..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~--~--~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRV--K--PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHS--C--CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhc--c--cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcC
Confidence 34556789999999999865 3 334543 3456677899999999999876543 245677888899999999
Q ss_pred cCChHHHHHHHhhCC----CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 006076 338 CGKLELGQCVFDHMD----KR-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM 412 (662)
Q Consensus 338 ~g~~~~A~~~~~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 412 (662)
.|+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999864 24 456777888999999999999999987 4567888889999999999999999
Q ss_pred HHHHhHHhcCCCCChHH---HHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076 413 LFESMRKEHMIRPSVEH---YACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487 (662)
Q Consensus 413 ~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (662)
.++.+.+. .|+... ...++..+...|++++|..+|+++ ..+++...|+.+..++...|++++|+..++++++
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999864 455321 233445566679999999999998 2345888999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCChHH-HHHHHHHHHhC
Q 006076 488 LEPTNAGNYVLLADVYAAADMWDE-VKRVKRLLEAR 522 (662)
Q Consensus 488 ~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 522 (662)
.+|+++.++..++.++...|+.++ +.++++++.+.
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999987 56888887763
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=6.6e-17 Score=176.13 Aligned_cols=132 Identities=13% Similarity=0.145 Sum_probs=109.2
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhhCC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 006076 321 LDSILPVVSALVTMYARCGKLELGQCVFDHMD-------KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS 393 (662)
Q Consensus 321 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (662)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33446689999999999999999999997653 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 394 FVSVLGACSHAGL-VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 394 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
|+++|.++++.|. .++|.++|++|. ..|+.||..+|++++....+.+-++...++..++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999887 478889999997 4689999999999988777765555544443333
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=173.12 Aligned_cols=151 Identities=14% Similarity=0.102 Sum_probs=127.0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC-------CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH
Q 006076 218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA-------VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290 (662)
Q Consensus 218 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~ 290 (662)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++| ...|+.||.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM--~~~G~~PDv 200 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV--KDAGLTPDL 200 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHTTCCCCH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH--HHcCCCCcH
Confidence 44456799999999999999999999997753 589999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHccCCH-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CChhHHHHHHH
Q 006076 291 VTMVSVLQACAALAAL-EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK-----RDVVSWNSLIS 364 (662)
Q Consensus 291 ~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~ 364 (662)
+||+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.. |.+.+-+.|.+
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999999999984 78999999999999999999999999988887666666665544432 12334444555
Q ss_pred HHHhcC
Q 006076 365 SYGVHG 370 (662)
Q Consensus 365 ~~~~~g 370 (662)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 566544
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=1.9e-13 Score=137.43 Aligned_cols=224 Identities=11% Similarity=-0.012 Sum_probs=121.8
Q ss_pred hhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCHhHHHHHH
Q 006076 184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA---VKNVVSWSAMI 260 (662)
Q Consensus 184 ~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li 260 (662)
..+......+...++ +++|..++..+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+.
T Consensus 22 ~~~~~~a~~~~~~~~----~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 96 (327)
T 3cv0_A 22 ENPMEEGLSMLKLAN----LAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96 (327)
T ss_dssp SCHHHHHHHHHHTTC----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 345555566666777 888888888877764 4466777777778888888888888877664 23566777777
Q ss_pred HHHHHcCChhHHHHHHHHHhhhhCCCcCCHH-HHHHHH-------------HH--HHccCCHHHHHHHHHHHHHhCCCCc
Q 006076 261 ACYARNGMAFEALELFREMIMESHDLCPNSV-TMVSVL-------------QA--CAALAALEQGKMIHGYILRRGLDSI 324 (662)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~-t~~~ll-------------~a--~~~~~~~~~a~~~~~~~~~~g~~~~ 324 (662)
..|...|++++|++.|+++ ... .|+.. .+..+. .. +...|++++|...++.+.+.. +.+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 171 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAW--LLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PND 171 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHH--HHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHcCCHHHHHHHHHHH--HHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCC
Confidence 7888888888888888777 322 22222 121110 11 444555555555555555443 223
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076 325 LPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401 (662)
Q Consensus 325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (662)
..++..+...|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4444445555555555555555544432 1223344444444444444444444444444421 11233444444444
Q ss_pred hcCCCHHHHHHHHHHhH
Q 006076 402 SHAGLVEEGKMLFESMR 418 (662)
Q Consensus 402 ~~~g~~~~a~~~~~~~~ 418 (662)
...|++++|.+.++.+.
T Consensus 251 ~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 44444444444444443
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=4.1e-13 Score=142.97 Aligned_cols=367 Identities=10% Similarity=-0.043 Sum_probs=219.9
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHhcC------------CCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhC----CCC
Q 006076 115 PFLVTKLINVYSHFDSVDDARHVFDKT------------RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT----GTG 178 (662)
Q Consensus 115 ~~~~~~li~~y~~~g~~~~A~~~f~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~g 178 (662)
...||.|...|...|+.++|++.|++. .....++|+.+...|...|++++|...|++.... ...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 344555555555566666655555432 1123456777777777777777777777665431 001
Q ss_pred CCCC-hhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH---HhcCCHHHHHHHHHcCC---CC
Q 006076 179 IRSD-RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY---ARFGCVMYAGFVFSQMA---VK 251 (662)
Q Consensus 179 ~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y---~~~g~~~~A~~~f~~~~---~~ 251 (662)
..++ ..++...-.++...+ .+.+++|.+.|..+++.. +.+...+..+...+ ...++.++|...|++.. ..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~--~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCG--GNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cchhhHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1222 234444333333322 122899999999999875 44566666665554 34577777888777653 34
Q ss_pred CHhHHHHHHHHHHH----cCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhH
Q 006076 252 NVVSWSAMIACYAR----NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV 327 (662)
Q Consensus 252 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 327 (662)
+...+..+...+.. .|+.++|.+.+++. .... +.+...+..+...+...|++++|...+..+.+.. +.+..+
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a--l~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEA--LEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHH--HHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 56667666655554 46778999999887 3322 3456678888889999999999999999999875 335667
Q ss_pred HHHHHHHHHhc-------------------CChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006076 328 VSALVTMYARC-------------------GKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385 (662)
Q Consensus 328 ~~~li~~y~~~-------------------g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (662)
+..+...|... +..+.|...|+... ..+..+|..+...|...|++++|++.|++..+.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 77777666432 23556777776654 345678999999999999999999999999885
Q ss_pred CCCCCHh--HHHHHHH-HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHH
Q 006076 386 GVSPSPI--SFVSVLG-ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPK 460 (662)
Q Consensus 386 g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~ 460 (662)
...|... .+..+.. ...+.|+.++|...|....+ +.|+........ ..+..+++.. .. +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHH
Confidence 4333221 2222222 34578999999999999875 456544332222 2333344333 22 34678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076 461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500 (662)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (662)
+|..|...+...|+.++|...++++++++|.+|.++.-++
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 8999999999999999999999999999998887766554
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=9.4e-14 Score=134.50 Aligned_cols=214 Identities=9% Similarity=0.009 Sum_probs=155.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C----C----hhHHHHHHH
Q 006076 295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R----D----VVSWNSLIS 364 (662)
Q Consensus 295 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~----~----~~~~~~li~ 364 (662)
.+...+...|++++|...+..+++.. .+..++..+...|...|++++|.+.|++..+ | + ..+|..+..
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 33344444444444444444444444 3444555555555555555555555555432 1 1 467777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 006076 365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444 (662)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 444 (662)
.|...|++++|++.|++... +.|+.. .+...|++++|...++.+.+.. +.+...+..+...+...|+++
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhcCHH
Confidence 88888888888888888887 345532 3555677888888888886532 335677888889999999999
Q ss_pred HHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 445 EAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 445 ~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
+|...+++. .. +.+..+|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|...+++..+
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999998887 22 346788889999999999999999999999999999999999999999999999999999988765
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=1.3e-13 Score=130.11 Aligned_cols=195 Identities=13% Similarity=0.075 Sum_probs=153.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHH
Q 006076 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSV 397 (662)
Q Consensus 322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 397 (662)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666777888888899999999999887653 45678888899999999999999999998884 454 4677788
Q ss_pred HHHHhcC-----------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHH
Q 006076 398 LGACSHA-----------GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSL 465 (662)
Q Consensus 398 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 465 (662)
..++... |++++|...++...+.. +.+...+..+...|...|++++|+..|++. .+..+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 99999999999998642 336788999999999999999999999987 222788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
..++...|++++|...++++++++|+++..+..++.+|.+.|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.1e-13 Score=131.95 Aligned_cols=233 Identities=10% Similarity=-0.034 Sum_probs=171.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC--Cc----hhH
Q 006076 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD--SI----LPV 327 (662)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~ 327 (662)
..|..+...+...|++++|+..|++. .... ++..++..+..++...|++++|...+..+++.... ++ ..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a--~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKA--WELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH--HHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH--HHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 45666666777777777777777776 3333 55666666777777777777777777776654311 11 467
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcC
Q 006076 328 VSALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHA 404 (662)
Q Consensus 328 ~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 404 (662)
+..+...|.+.|++++|...|++..+ |+. ..+...|++++|+..++++... .|+ ...+..+...+...
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHh
Confidence 77778888888888888888877653 432 3456677888899988888873 443 45677778888889
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006076 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERAS 482 (662)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 482 (662)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|...+++. ...| +..+|..+...+...|+.++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999887643 446788889999999999999999999877 2233 5788888999999999999999999
Q ss_pred HHHHhcC------CCCcchHHHHHH
Q 006076 483 KRLFELE------PTNAGNYVLLAD 501 (662)
Q Consensus 483 ~~~~~~~------p~~~~~~~~l~~ 501 (662)
++++++. |++...+..+..
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHhChhhcCCCchHHHHHHHHH
Confidence 9999888 776655555443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=4e-13 Score=131.55 Aligned_cols=240 Identities=8% Similarity=-0.112 Sum_probs=180.9
Q ss_pred cCChhHHHHHHHHHhhhhCCC--cC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 006076 266 NGMAFEALELFREMIMESHDL--CP-NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE 342 (662)
Q Consensus 266 ~g~~~~A~~~~~~m~~~~~~~--~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 342 (662)
.|++++|++.|+++ ..... .| +..++..+...+...|++++|...++.+++.. +.+..++..+...|...|+++
T Consensus 18 ~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 18 TLQQEVILARMEQI--LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CHHHHHHHHHHHHH--HTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHH--HhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 46677788888777 33221 11 34566667777777888888888888877764 335778888888888889999
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHH
Q 006076 343 LGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419 (662)
Q Consensus 343 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 419 (662)
+|.+.|++..+ .+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 98888887753 4677899999999999999999999999988 456665555556666777999999999988775
Q ss_pred hcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG-----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493 (662)
Q Consensus 420 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (662)
.. +++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|+.++|...++++++.+|++.
T Consensus 173 ~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 KS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 43 4444444 4777788888889999999877 32332 57888999999999999999999999999999875
Q ss_pred chHHHHHHHHHhcCChHHHHHHH
Q 006076 494 GNYVLLADVYAAADMWDEVKRVK 516 (662)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~ 516 (662)
..+ ..++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 444 66778889999987765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=1.1e-12 Score=128.28 Aligned_cols=241 Identities=12% Similarity=-0.015 Sum_probs=128.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCC--HHHHHHHHHHH
Q 006076 226 TTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN--SVTMVSVLQAC 300 (662)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~--~~t~~~ll~a~ 300 (662)
......|.+.|++++|...|++..+ .+...|..+...|.+.|++++|++.|++. ....-.|+ ...+..+...+
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY--FSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHH--HTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH--HhccCchhHHHHHHHHHHHHH
Confidence 3445556666666666666666532 23446666666666666666666666666 32221111 12244555555
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHH
Q 006076 301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQ 377 (662)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 377 (662)
...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~-------------- 149 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG-------------- 149 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH--------------
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH--------------
Confidence 55555666655555555543 12334455555555555555555555554432 1233333333
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhc-
Q 006076 378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK---LEEAAKIIEDL- 453 (662)
Q Consensus 378 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m- 453 (662)
..+...+++++|.+.|+.+.+.. +.+...+..+...+...|+ +++|...+++.
T Consensus 150 ---------------------~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 150 ---------------------QAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ---------------------HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 12222335555555555544321 2224444444555554454 44444444433
Q ss_pred ---CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 006076 454 ---RIEPG------PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506 (662)
Q Consensus 454 ---~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (662)
...|+ ..+|..+...|...|++++|...++++++++|+++.+...+..+....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 11122 246777888888899999999999999999999887777666655443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=4.2e-12 Score=133.96 Aligned_cols=374 Identities=11% Similarity=0.020 Sum_probs=197.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCCh---HHHHHHHhcCCCCCcchHHHHHHHHHhcC--
Q 006076 86 LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV---DDARHVFDKTRRRTIYVWNALFRALTLAG-- 160 (662)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 160 (662)
+...+.+.|++++|.+++....+.| ++..+..|..+|...|+. ++|...|++..+.++..+..|...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4455566788999999999988876 344555667777777887 89999998877667777777777565555
Q ss_pred ---CccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-
Q 006076 161 ---RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG- 236 (662)
Q Consensus 161 ---~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g- 236 (662)
++++|+..|++.... |... .+..+-..+...+.... -..+.+.+......| +......|..+|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~--g~~~---A~~~Lg~~y~~~~~~~~-~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFAN--GEGN---TLIPLAMLYLQYPHSFP-NVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCSS---CHHHHHHHHHHCGGGCT-TCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHHC--CCHH---HHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 677899999888876 4322 44444444444433111 123444444444444 2345555666666665
Q ss_pred ---CHHHHHHHHHcCCCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHH
Q 006076 237 ---CVMYAGFVFSQMAVKNVVSWSAMIACYARNG---MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK 310 (662)
Q Consensus 237 ---~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (662)
..+.+..++......++..+..|...|.+.| +.++|++.|++. ...| .++...+
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a--a~~g-~~~a~~~----------------- 216 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG--VSRG-TVTAQRV----------------- 216 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTT-CSCHHHH-----------------
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH--HHCC-CHHHHHH-----------------
Confidence 3344445555555555556666666666666 666666666655 3333 2222222
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhc----CChHHHHHHHhhCCCCChhHHHHHHHH-H--HhcCChHHHHHHHHHHH
Q 006076 311 MIHGYILRRGLDSILPVVSALVTMYARC----GKLELGQCVFDHMDKRDVVSWNSLISS-Y--GVHGYGGKAIQIFKEMI 383 (662)
Q Consensus 311 ~~~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~m~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~ 383 (662)
..|..+|... +++++|.+.|+.....+...+..|... | ...++.++|++.|++..
T Consensus 217 ------------------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 217 ------------------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp ------------------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3333333322 455555555554442234455555544 2 34667777777777776
Q ss_pred HcCCCCCHhHHHHHHHHHhcCC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhcC
Q 006076 384 YHGVSPSPISFVSVLGACSHAG-----LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR----ANKLEEAAKIIEDLR 454 (662)
Q Consensus 384 ~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 454 (662)
+.| +...+..+...|. .| ++++|.++|+... +-++..+..|..+|.. ..++++|...|++.-
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA 349 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 655 4445555555554 34 7777777777664 2345666666666655 337777887777662
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH--HhcCChHHHHHHHHHHH
Q 006076 455 IEPGPKVWGSLLGSCRI----HCNVELAERASKRLFELEPTNAGNYVLLADVY--AAADMWDEVKRVKRLLE 520 (662)
Q Consensus 455 ~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~ 520 (662)
-..+......|...|.. ..+.++|...+++..+.++.+ .-..+..+. ...++.++|.++.++-.
T Consensus 350 ~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 350 RNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp TTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22344444555555543 347788888888887776542 333333332 22335556666665544
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=5.1e-12 Score=121.93 Aligned_cols=197 Identities=12% Similarity=-0.010 Sum_probs=154.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076 325 LPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401 (662)
Q Consensus 325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (662)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4566677777888888888888887765 2456678888888888888888888888887753 23556777778888
Q ss_pred hcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHH
Q 006076 402 SHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELA 478 (662)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a 478 (662)
...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|+.++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888864 22334 5667788888888888888888888876 223 3577788888888888899999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
...++++++..|++...+..++.+|.+.|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999888888888888888888888888899999988888887643
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=1e-11 Score=119.81 Aligned_cols=207 Identities=13% Similarity=-0.001 Sum_probs=137.2
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006076 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV 332 (662)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 332 (662)
...|..+...+...|++++|++.|+++ .... +.+...+..+...+...|++++|...++.+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~a--l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------ 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKA--LEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD------------ 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH--HhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------
Confidence 566778888888888888888888877 3221 1234444444455555555555555555554432
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHH
Q 006076 333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGK 411 (662)
Q Consensus 333 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 411 (662)
..+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+...|++++|.
T Consensus 102 --------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 102 --------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 12344555566666666666666666666655333443 345666666777777777777
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELE 489 (662)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (662)
++++.+.+.. +.+...+..+...|.+.|++++|...++++ ... .+...|..+...+...|+.++|...++++.+..
T Consensus 162 ~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 162 EYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777776532 335677778888888888888888888776 323 456677778888888899999999999998888
Q ss_pred CCCcchH
Q 006076 490 PTNAGNY 496 (662)
Q Consensus 490 p~~~~~~ 496 (662)
|+++...
T Consensus 240 p~~~~~~ 246 (252)
T 2ho1_A 240 PGSLEYQ 246 (252)
T ss_dssp TTSHHHH
T ss_pred CCCHHHH
Confidence 8875543
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=8.4e-12 Score=117.80 Aligned_cols=195 Identities=12% Similarity=0.028 Sum_probs=127.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076 325 LPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401 (662)
Q Consensus 325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (662)
..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4455556666666666666666666543 2345566666667777777777777777766642 22445666666677
Q ss_pred hcC-CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 006076 402 SHA-GLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVEL 477 (662)
Q Consensus 402 ~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 477 (662)
... |++++|...++.+.+ .+..| +...+..+...|.+.|++++|...++++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 777 777777777777654 21222 3556667777777777777777777665 2223 46667777777777777777
Q ss_pred HHHHHHHHHhcCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 478 AERASKRLFELEP-TNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 478 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
|...++++++..| +++..+..++..+...|+.++|..+++.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777777777 6666777777777777777777777777654
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=2e-12 Score=123.89 Aligned_cols=169 Identities=11% Similarity=0.035 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCC
Q 006076 329 SALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405 (662)
Q Consensus 329 ~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 405 (662)
..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|
T Consensus 61 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLE 139 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 333334444444444444443332 1234445555555555555555555555555532 223444555555555666
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006076 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASK 483 (662)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 483 (662)
++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|+.++|...++
T Consensus 140 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 140 QPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6666666666555432 234555555666666666666666666554 11 2245556666666666666666666666
Q ss_pred HHHhcCCCCcchHHHHH
Q 006076 484 RLFELEPTNAGNYVLLA 500 (662)
Q Consensus 484 ~~~~~~p~~~~~~~~l~ 500 (662)
++++..|+++..+..+.
T Consensus 218 ~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 218 KAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHCTTCHHHHHHHT
T ss_pred HHHccCcchHHHHHHHH
Confidence 66666666555544443
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=2.3e-12 Score=123.52 Aligned_cols=197 Identities=10% Similarity=0.046 Sum_probs=156.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 006076 324 ILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400 (662)
Q Consensus 324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 400 (662)
....+..+...+.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 455677788888899999999999988753 467789999999999999999999999998853 3356788888899
Q ss_pred HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHH
Q 006076 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELA 478 (662)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 478 (662)
+...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|...++++ .. +.+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998653 457888999999999999999999999987 22 34678899999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
...++++++..|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999987643
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=2.2e-11 Score=114.87 Aligned_cols=199 Identities=10% Similarity=-0.064 Sum_probs=136.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhc-CChH
Q 006076 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVH-GYGG 373 (662)
Q Consensus 298 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~-g~~~ 373 (662)
..+...|++++|...++.+++.. +.+...+..+...|...|++++|.+.|++.. ..+..+|..+...|... |+++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPA 94 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHH
Confidence 33333444444444444433332 1234455555566666666666666666543 23556777777788888 8888
Q ss_pred HHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 006076 374 KAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452 (662)
Q Consensus 374 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (662)
+|+..|+++.+.+..|+ ...+..+..++...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...+++
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888877333344 4567777778888888888888888887542 34577888888899999999999988887
Q ss_pred c-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076 453 L-RI-E-PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499 (662)
Q Consensus 453 m-~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (662)
+ .. + .+...|..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 6 22 2 4667777777788889999999999999998899876655443
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=1.4e-11 Score=126.10 Aligned_cols=243 Identities=11% Similarity=0.027 Sum_probs=194.5
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcC-CHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCCCchhHHHH
Q 006076 253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCP-NSVTMVSVLQACAALAA-LEQGKMIHGYILRRGLDSILPVVSA 330 (662)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ 330 (662)
...|+.+...+.+.|++++|++.|++.+ . +.| +...|..+..++...|+ +++|...++.+++.. +.+..+|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al--~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAI--E--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHH--H--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 4567888888888899999999988873 2 234 45667777778888886 999999998888875 336778888
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhc-CC
Q 006076 331 LVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSH-AG 405 (662)
Q Consensus 331 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~-~g 405 (662)
+..+|.+.|++++|...|+++.+ .+...|..+..++.+.|++++|+..|+++++. .| +...|..+..++.. .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998763 57789999999999999999999999999985 44 45788888888888 56
Q ss_pred CHHHH-----HHHHHHhHHhcCCCCChHHHHHHHHHHhhcC--CHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC----
Q 006076 406 LVEEG-----KMLFESMRKEHMIRPSVEHYACMVDLLGRAN--KLEEAAKIIEDLRIEP-GPKVWGSLLGSCRIHC---- 473 (662)
Q Consensus 406 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g---- 473 (662)
..++| +..++...+.. +-+...|..+..+|.+.| ++++|.+.+.++...| +...+..+...+...|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 65777 47888877542 336778999999999988 6899999998885455 5677888888888764
Q ss_pred -----CHHHHHHHHHHH-HhcCCCCcchHHHHHHHHH
Q 006076 474 -----NVELAERASKRL-FELEPTNAGNYVLLADVYA 504 (662)
Q Consensus 474 -----~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 504 (662)
..++|..+++++ .+++|.....|..++..+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 258999999999 8999998888887776664
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=5.9e-11 Score=116.14 Aligned_cols=228 Identities=11% Similarity=-0.042 Sum_probs=119.2
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCchhH
Q 006076 252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA----LAALEQGKMIHGYILRRGLDSILPV 327 (662)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~ 327 (662)
+..++..+...|.+.|++++|++.|++. ...+ +...+..+...+.. .+++++|...++...+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a--~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKA--CDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHH--HHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 4556666666677777777777777666 3321 33444444455555 555666665555555543 3444
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----
Q 006076 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH---- 403 (662)
Q Consensus 328 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---- 403 (662)
+..+..+|... ....+++++|++.|++..+.+ +...+..+...+..
T Consensus 77 ~~~lg~~~~~g---------------------------~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 77 CHLLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp HHHHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHhCC---------------------------CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCc
Confidence 44444444440 000445555555555444432 33444444444444
Q ss_pred CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCH
Q 006076 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR----ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI----HCNV 475 (662)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~ 475 (662)
.+++++|...|+...+. + +...+..+...|.. .+++++|...+++.--..+...+..+...+.. .++.
T Consensus 127 ~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred ccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccH
Confidence 55555555555555431 1 33444445555554 55555555555544111234455555555555 5666
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 006076 476 ELAERASKRLFELEPTNAGNYVLLADVYAA----ADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 523 (662)
++|...++++.+.+| +..+..|+.+|.. .|++++|.+.+++..+.|
T Consensus 203 ~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666666666665544 3455566666666 666666666666555443
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=5.3e-11 Score=116.43 Aligned_cols=231 Identities=8% Similarity=-0.120 Sum_probs=158.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC-CHhHHHHHHHHHHH----cCChhHHHHHHHHHhhhhCCCcCCHHHHH
Q 006076 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMIACYAR----NGMAFEALELFREMIMESHDLCPNSVTMV 294 (662)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~p~~~t~~ 294 (662)
.+..++..+...|.+.|++++|...|++..++ +..++..+...|.. .+++++|++.|++. ...+ +...+.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a--~~~~---~~~a~~ 78 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA--CDLN---YSNGCH 78 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTT---CHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH--HHCC---CHHHHH
Confidence 35677888999999999999999999987655 67788999999999 99999999999998 5554 677777
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 006076 295 SVLQACAA----LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370 (662)
Q Consensus 295 ~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 370 (662)
.+...+.. .+++++|...++.+.+.+ +...+..+..+|.+.. ...+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~ 128 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTR 128 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCC
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------Cccc
Confidence 88888888 889999999988887764 4555555555555500 0044
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCC
Q 006076 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH----AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR----ANK 442 (662)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 442 (662)
++++|++.|++..+.+ +...+..+...+.. .+++++|...|+...+. .+...+..+...|.. .++
T Consensus 129 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCC
T ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcc
Confidence 4555555555554433 33344444445554 56666666666665532 234555666666666 677
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC
Q 006076 443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRI----HCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 443 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 492 (662)
+++|.+.+++.--..+...+..+...+.. .++.++|...++++.+.+|++
T Consensus 202 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 202 FKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 77777776665111235566667777776 778888888888888877753
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=1.3e-11 Score=116.26 Aligned_cols=192 Identities=15% Similarity=0.047 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006076 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333 (662)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 333 (662)
..|..+...+.+.|++++|+..|++. .... +.+...+..+..++...|++++|...++.+++.. +.+...+..+..
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERA--LKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH--HTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34444445555555555555555544 1111 1133344444444445555555555555554443 223444555555
Q ss_pred HHHhc-----------CChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 006076 334 MYARC-----------GKLELGQCVFDHMDK--R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399 (662)
Q Consensus 334 ~y~~~-----------g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (662)
.|.+. |++++|...|++..+ | +...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55555 666666666665542 2 44566666666777777777777777766654 55666666666
Q ss_pred HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
++...|++++|...|+...+.. +.+...+..+...+.+.|++++|...+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777777777666432 334566666667777777777776666654
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=1.1e-11 Score=126.83 Aligned_cols=226 Identities=8% Similarity=0.035 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-hHHHHHHHhhCCC---CChhHHHHHHHH
Q 006076 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK-LELGQCVFDHMDK---RDVVSWNSLISS 365 (662)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~m~~---~~~~~~~~li~~ 365 (662)
...|..+..++...|++++|...++.+++.. +.+..+|+.+...|.+.|+ +++|...|++..+ .+...|+.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456667777888999999999999999885 3467889999999999997 9999999998863 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh-cCCH
Q 006076 366 YGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR-ANKL 443 (662)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~ 443 (662)
|...|++++|+..|+++.+. .| +...|..+..++...|++++|+..++.+.+.. +.+...|+.+..+|.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999994 45 55788899999999999999999999998653 3468899999999999 6665
Q ss_pred HHH-----HHHHHhc-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-------
Q 006076 444 EEA-----AKIIEDL-RIEP-GPKVWGSLLGSCRIHC--NVELAERASKRLFELEPTNAGNYVLLADVYAAAD------- 507 (662)
Q Consensus 444 ~~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 507 (662)
++| ++.|++. .+.| +...|..+...+...| +.++|...++++ +.+|+++.++..|+++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4667665 3445 6778999999898888 689999999998 889999999999999999875
Q ss_pred --ChHHHHHHHHHH-Hh
Q 006076 508 --MWDEVKRVKRLL-EA 521 (662)
Q Consensus 508 --~~~~A~~~~~~m-~~ 521 (662)
.+++|.++++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 358999999998 54
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=4.4e-12 Score=132.22 Aligned_cols=196 Identities=10% Similarity=-0.007 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC---------CChhHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 006076 326 PVVSALVTMYARCGKLELGQCVFDHMDK---------RDVVSWNSLISSYGVHGY-----------------GGKAIQIF 379 (662)
Q Consensus 326 ~~~~~li~~y~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 379 (662)
.++..+...|...|++++|...|++..+ ....+|..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3444555555555666655555554431 123356666666777777 77777776
Q ss_pred HHHHHc----CCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHH
Q 006076 380 KEMIYH----GVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS----VEHYACMVDLLGRANKLEEAAKII 450 (662)
Q Consensus 380 ~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 450 (662)
++..+. +-.| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 665432 1111 1246666777778888888888888777543211111 236778888888888888888888
Q ss_pred Hhc-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCChHHHHHHH
Q 006076 451 EDL-RI---EP----GPKVWGSLLGSCRIHCNVELAERASKRLFELEPT------NAGNYVLLADVYAAADMWDEVKRVK 516 (662)
Q Consensus 451 ~~m-~~---~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (662)
++. .. .. ...++..+...+...|++++|...++++++..+. ...++..++.+|.+.|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 765 11 11 1456778888888999999999999988876433 2347888999999999999999999
Q ss_pred HHHHh
Q 006076 517 RLLEA 521 (662)
Q Consensus 517 ~~m~~ 521 (662)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.40 E-value=1.4e-11 Score=128.00 Aligned_cols=195 Identities=12% Similarity=0.043 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHHHH
Q 006076 327 VVSALVTMYARCGKLELGQCVFDHMDK-----RD----VVSWNSLISSYGVHGY--------------------GGKAIQ 377 (662)
Q Consensus 327 ~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 377 (662)
++..+...|...|++++|...|++..+ ++ ..+|..+...|...|+ +++|++
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 444455555555555555555554431 11 2355566666666666 666666
Q ss_pred HHHHHHHc----CCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHH
Q 006076 378 IFKEMIYH----GVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS----VEHYACMVDLLGRANKLEEAAK 448 (662)
Q Consensus 378 ~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 448 (662)
.+.+.... +-.|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66655431 11111 235566666777777777777777766542211111 2367777777888888888877
Q ss_pred HHHhc----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChHHHHH
Q 006076 449 IIEDL----RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTN------AGNYVLLADVYAAADMWDEVKR 514 (662)
Q Consensus 449 ~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 514 (662)
.+++. +..++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77765 11112 4566777778888888888888888887654332 4467778888888888888888
Q ss_pred HHHHHHh
Q 006076 515 VKRLLEA 521 (662)
Q Consensus 515 ~~~~m~~ 521 (662)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.40 E-value=2.8e-11 Score=118.16 Aligned_cols=226 Identities=8% Similarity=-0.036 Sum_probs=169.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----hhHHHHHHHHHH
Q 006076 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RD----VVSWNSLISSYG 367 (662)
Q Consensus 294 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~ 367 (662)
......+...|++++|...++.+++.. +.+...+..+...|...|++++|...|++..+ ++ ..+|..+...|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 334445556666666666666666553 22344666677777778888888777776543 22 224888889999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006076 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447 (662)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 447 (662)
..|++++|++.|++..+.. +.+..++..+...+...|++++|...++...+. -+.+...+..+...+...+++++|.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998853 234578888999999999999999999988743 2346777888883444456999999
Q ss_pred HHHHhc-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHhcCChHHHHH
Q 006076 448 KIIEDL-RIEP-GPKVWGSLLGSCRIHCN---VELAERASKRLFELE---PTN-----AGNYVLLADVYAAADMWDEVKR 514 (662)
Q Consensus 448 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~ 514 (662)
+.|+++ ...| +...|..+...+...|+ .++|...++++++.. |+. ..+|..++..|.+.|++++|.+
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999987 3344 46778888888888888 888999999998764 442 2578889999999999999999
Q ss_pred HHHHHHhCC
Q 006076 515 VKRLLEARG 523 (662)
Q Consensus 515 ~~~~m~~~~ 523 (662)
.+++..+.+
T Consensus 243 ~~~~al~~~ 251 (272)
T 3u4t_A 243 AWKNILALD 251 (272)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999988643
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=4.4e-11 Score=109.26 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=133.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 006076 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM 433 (662)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 433 (662)
+...|..+...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|...+....... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 4567788888888888888888888888774 44 44677777788888888888888888886542 4456777778
Q ss_pred HHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHH
Q 006076 434 VDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511 (662)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (662)
...+...+++++|.+.+.+. ... .+...|..+...+...|++++|+..++++++++|+++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888888998888888876 223 3677888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 006076 512 VKRVKRLLEAR 522 (662)
Q Consensus 512 A~~~~~~m~~~ 522 (662)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999887764
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=1.9e-09 Score=117.68 Aligned_cols=419 Identities=10% Similarity=0.018 Sum_probs=275.0
Q ss_pred CCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCC---hHHHHHHHhcCCC-----CCcc
Q 006076 76 PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS---VDDARHVFDKTRR-----RTIY 147 (662)
Q Consensus 76 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~-----~~~~ 147 (662)
.+-|..+|..++..+.+.+.++.++.+++.+++. ++.....|...+..-.+.|. .+.+..+|++... +++.
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 4568888889998888888899999999998887 46677788888888888888 8999999986543 5677
Q ss_pred hHHHHHHHHHhcCCc--------cHHHHHHHHHhhCCCCC-CCCh-hhHHHHHHHHHhCCC-----CccchHHHHHHHHH
Q 006076 148 VWNALFRALTLAGRG--------EEVLELYRRMNGTGTGI-RSDR-FTYTYVLKACVASSC-----GFSLLKHGKEIHAS 212 (662)
Q Consensus 148 ~~~~li~~~~~~g~~--------~~A~~l~~~m~~~~~g~-~p~~-~t~~~ll~~~~~~~~-----~~~~~~~a~~~~~~ 212 (662)
.|...+.-..+.++. +...++|+..+..- |. .|+. ..|...+.-...... ..+.++.++.++..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~v-G~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKC-AIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHT-TTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 788877765555543 23346777655431 55 5543 344444443322110 01126778888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHh-------------cCCHHHHHHHHHcC-----------CC----------C--C----
Q 006076 213 VLRHGYNGIVHIMTTLIDMYAR-------------FGCVMYAGFVFSQM-----------AV----------K--N---- 252 (662)
Q Consensus 213 ~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~~-----------~~----------~--~---- 252 (662)
++......-..+|......--. ..+++.|...+.++ +. | +
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 8753222222333322221111 12234455555431 11 0 0
Q ss_pred --HhHHHHHHHHHHHcCC-------hhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHhCCC
Q 006076 253 --VVSWSAMIACYARNGM-------AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK-MIHGYILRRGLD 322 (662)
Q Consensus 253 --~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~ 322 (662)
...|...+.---.++. .+.+..+|++.+ .. .+-+...|.....-+...|+.+.|. .+++.++.. .+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL--~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P 375 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA--QH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IP 375 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH--HH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH--HH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CC
Confidence 2346555554333321 233456677763 21 2235566666666677788888896 999999875 34
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCC-------------CC------------hhHHHHHHHHHHhcCChHHHHH
Q 006076 323 SILPVVSALVTMYARCGKLELGQCVFDHMDK-------------RD------------VVSWNSLISSYGVHGYGGKAIQ 377 (662)
Q Consensus 323 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~ 377 (662)
.+...+-.++..+-+.|+++.|.++|+.+.+ |+ ...|...+....+.|..+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677788889999999999999999987753 31 2368888888888899999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHhcC-CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC
Q 006076 378 IFKEMIYHGVSPSPISFVSVLGACSHA-GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI 455 (662)
Q Consensus 378 ~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 455 (662)
+|.+..+.-..+....|......-.+. ++.+.|..+|+...+.+ +.+...+...++.....|+.+.|..+|++. ..
T Consensus 456 vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 456 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999998751112233443332222333 55899999999998764 556777888999999999999999999987 22
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076 456 EP----GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503 (662)
Q Consensus 456 ~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (662)
.| ....|...+.--..+|+.+.+..+.+++.+..|+++ ....+++-|
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 33 346799999988999999999999999999999864 334444444
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=3.9e-12 Score=135.14 Aligned_cols=208 Identities=9% Similarity=-0.025 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh-HHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006076 307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL-ELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEM 382 (662)
Q Consensus 307 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 382 (662)
+.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444433322 233566677777777777887 888877776642 34678888999999999999999999998
Q ss_pred HHcCCCCCHhHHHHHHHHHhcC---------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc--------CCHHH
Q 006076 383 IYHGVSPSPISFVSVLGACSHA---------GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA--------NKLEE 445 (662)
Q Consensus 383 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~ 445 (662)
.+ +.|+...+..+..++... |++++|.+.++...+.. +.+...|..+..+|... |++++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 88 467778888888899998 99999999999988643 44688899999999988 99999
Q ss_pred HHHHHHhc-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006076 446 AAKIIEDL-RIEP----GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519 (662)
Q Consensus 446 A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (662)
|++.|++. ...| +...|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999987 3345 78899999999999999999999999999999999999999999999999999999866543
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.39 E-value=2.4e-11 Score=128.13 Aligned_cols=308 Identities=12% Similarity=0.057 Sum_probs=208.6
Q ss_pred HHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHHcCCCCCHhHHHHHHHHHHHcC-
Q 006076 192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV---MYAGFVFSQMAVKNVVSWSAMIACYARNG- 267 (662)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g- 267 (662)
.+.+.++ +++|.+++..+.+.|. ...+..|..+|...|+. ++|...|++..+.++..+..+...+...|
T Consensus 12 ~~~~~g~----~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 12 EALKRGD----TVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHhCCC----HHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 3444556 9999999999988873 33445677777778888 89999999987777777888887666665
Q ss_pred ----ChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCH---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006076 268 ----MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL---EQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340 (662)
Q Consensus 268 ----~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 340 (662)
++++|+..|++. ...|. |+ .+..+...+...+.. ..+.+.+....+.| ++.....|..+|...+.
T Consensus 85 ~~~~~~~~A~~~~~~A--a~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKA--FANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp CCHHHHHHHHHHHHHH--HHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHH--HHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 678999999988 55553 22 455555556554443 33444555555555 45677778888888884
Q ss_pred ----hHHHHHHHhhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcC----CCHHH
Q 006076 341 ----LELGQCVFDHMDKRDVVSWNSLISSYGVHG---YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA----GLVEE 409 (662)
Q Consensus 341 ----~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~ 409 (662)
.+.+..+++.....++.++..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 455666677777777779999999999999 8999999999998876 44555555666666554 78999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHH-H--hhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHH
Q 006076 410 GKMLFESMRKEHMIRPSVEHYACMVDL-L--GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC-----NVELAERA 481 (662)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~ 481 (662)
|..+|+... +-++..+..|..+ | ...|++++|.+.|++.--..+...+..|...|. .| +.++|...
T Consensus 236 A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 236 AQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999999875 3456677777777 4 568899999999998732347777777777776 55 99999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 006076 482 SKRLFELEPTNAGNYVLLADVYAA----ADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 524 (662)
+++.. |.++.++..|+.+|.. ..++++|.+.+++..+.|.
T Consensus 310 ~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 310 FEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 99988 7788899999999887 3489999999998887664
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=1.4e-11 Score=124.01 Aligned_cols=229 Identities=13% Similarity=0.031 Sum_probs=148.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhH
Q 006076 293 MVSVLQACAALAALEQGKMIHGYILRR----GLD-SILPVVSALVTMYARCGKLELGQCVFDHMDK-----RD----VVS 358 (662)
Q Consensus 293 ~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~ 358 (662)
+..+...+...|++++|...+..+.+. +.. ....++..+...|...|++++|...|++..+ ++ ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 334444444555555555554444322 111 1134555566666666666666666655431 11 236
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHhcCCCHHHHHHH
Q 006076 359 WNSLISSYGVHGY--------------------GGKAIQIFKEMIYH----GVSPS-PISFVSVLGACSHAGLVEEGKML 413 (662)
Q Consensus 359 ~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 413 (662)
|..+...|...|+ +++|++.+++.... +-.|. ..++..+...+...|++++|.+.
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6667777777777 77777777665432 11111 23566677778888888888888
Q ss_pred HHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhc----CCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 006076 414 FESMRKEHMIRPS----VEHYACMVDLLGRANKLEEAAKIIEDL----RIEPG----PKVWGSLLGSCRIHCNVELAERA 481 (662)
Q Consensus 414 ~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 481 (662)
++...+...-.++ ...+..+...|...|++++|...+++. +..++ ..++..+...+...|++++|...
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8877543211111 337788888889999999999888765 11122 45677888889999999999999
Q ss_pred HHHHHhcCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 482 SKRLFELEPTN------AGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 482 ~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
++++++..|.. ..++..++.+|.+.|++++|...+++..+
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99988764432 34778899999999999999999998875
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=1.5e-11 Score=127.70 Aligned_cols=154 Identities=10% Similarity=-0.013 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC----h
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGV-SPS----PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS----V 427 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~ 427 (662)
.+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++...+...-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 4677777888888888888888887765210 112 236777778888889999998888877643211111 5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhc----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCc
Q 006076 428 EHYACMVDLLGRANKLEEAAKIIEDL----RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEP------TNA 493 (662)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~ 493 (662)
.++..+...|.+.|++++|...+++. +..++ ..++..+...+...|++++|...+++++++.+ ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 67788889999999999999988876 11122 55778888899999999999999999887532 234
Q ss_pred chHHHHHHHHHhcCChH
Q 006076 494 GNYVLLADVYAAADMWD 510 (662)
Q Consensus 494 ~~~~~l~~~~~~~g~~~ 510 (662)
.++..++.+|...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 56777888888777654
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.37 E-value=2e-11 Score=119.30 Aligned_cols=217 Identities=11% Similarity=-0.004 Sum_probs=179.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHH
Q 006076 302 ALAALEQGKMIHGYILRRGLD---SILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKA 375 (662)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 375 (662)
..+++++|...++.+++.... .+..++..+...|...|++++|...|++.. ..+..+|..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 457899999999999886422 246788899999999999999999999876 34678999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--
Q 006076 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-- 453 (662)
Q Consensus 376 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-- 453 (662)
++.|++..+.. +.+..++..+...+...|++++|...|+.+.+. .|+..........+...|++++|...+++.
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999853 335678889999999999999999999999864 465555555666667889999999999766
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT----NAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 454 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
..+++...|. ++..+...++.++|...++++++..|. ++..+..++.+|.+.|++++|...+++....+
T Consensus 173 ~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 173 KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2234444554 777778888899999999999887663 36788999999999999999999999998643
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.32 E-value=2.2e-11 Score=126.92 Aligned_cols=265 Identities=11% Similarity=0.008 Sum_probs=172.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCC--C-CH----hHHHHHHHHHHHcCChhHHHHHHHHHhhhh--CCC-cCCHHHHHHH
Q 006076 227 TLIDMYARFGCVMYAGFVFSQMAV--K-NV----VSWSAMIACYARNGMAFEALELFREMIMES--HDL-CPNSVTMVSV 296 (662)
Q Consensus 227 ~li~~y~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~-~p~~~t~~~l 296 (662)
.+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++..... .+- .....++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344455566666666666655431 1 22 345566666666666666666666553110 111 1123345555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhcCC-----------------hHHHHHHHhhCCC-
Q 006076 297 LQACAALAALEQGKMIHGYILRR----G-LDSILPVVSALVTMYARCGK-----------------LELGQCVFDHMDK- 353 (662)
Q Consensus 297 l~a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~~~~m~~- 353 (662)
...+...|++++|...+..+++. + ......++..+...|...|+ +++|.+.|++..+
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55566666666666666665443 1 11124466667777777777 7777776665431
Q ss_pred --------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHhcCCCHHHHHHHHHHhHHh
Q 006076 354 --------RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PS----PISFVSVLGACSHAGLVEEGKMLFESMRKE 420 (662)
Q Consensus 354 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 420 (662)
....+|..+...|...|++++|++.|++..+.... ++ ..++..+...+...|++++|...++...+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 12347778888888999999999998887663110 12 136777888899999999999999887643
Q ss_pred cCCC----CChHHHHHHHHHHhhcCCHHHHHHHHHhcC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076 421 HMIR----PSVEHYACMVDLLGRANKLEEAAKIIEDLR-I---EPG----PKVWGSLLGSCRIHCNVELAERASKRLFEL 488 (662)
Q Consensus 421 ~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (662)
..-. .....+..+...|...|++++|...+++.- + .++ ..++..+...+...|+.++|...+++++++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 2101 125678889999999999999999988761 1 112 346778889999999999999999999987
Q ss_pred CCC
Q 006076 489 EPT 491 (662)
Q Consensus 489 ~p~ 491 (662)
.+.
T Consensus 373 ~~~ 375 (411)
T 4a1s_A 373 AXX 375 (411)
T ss_dssp CCH
T ss_pred Hhh
Confidence 654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.4e-09 Score=108.50 Aligned_cols=219 Identities=11% Similarity=0.029 Sum_probs=154.8
Q ss_pred hHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006076 270 FEALELFREMIMESHDLCPNSVTMVSVLQACA-------ALAAL-------EQGKMIHGYILRRGLDSILPVVSALVTMY 335 (662)
Q Consensus 270 ~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y 335 (662)
++|+..|++.. .. .+-+...|......+. ..|++ ++|..+++.+++.-.+.+...+..++..+
T Consensus 33 ~~a~~~~~~al--~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCL--LV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHH--HH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45666666663 21 1123444444444443 24654 77777777777632233566788888888
Q ss_pred HhcCChHHHHHHHhhCCC--CC-hh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH-hcCCCHHHH
Q 006076 336 ARCGKLELGQCVFDHMDK--RD-VV-SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC-SHAGLVEEG 410 (662)
Q Consensus 336 ~~~g~~~~A~~~~~~m~~--~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a 410 (662)
.+.|++++|.++|++..+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888887653 32 33 78888888888899999999999888743 23334444333332 236899999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006076 411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-R---IEP--GPKVWGSLLGSCRIHCNVELAERASKR 484 (662)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 484 (662)
..+|+...+.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999887653 446788888999999999999999999877 2 344 466888888888889999999999999
Q ss_pred HHhcCCCCcc
Q 006076 485 LFELEPTNAG 494 (662)
Q Consensus 485 ~~~~~p~~~~ 494 (662)
+.+..|++..
T Consensus 267 a~~~~p~~~~ 276 (308)
T 2ond_A 267 RFTAFREEYE 276 (308)
T ss_dssp HHHHTTTTTS
T ss_pred HHHHcccccc
Confidence 9998887543
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=9.3e-11 Score=107.06 Aligned_cols=166 Identities=13% Similarity=0.052 Sum_probs=139.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 006076 324 ILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400 (662)
Q Consensus 324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 400 (662)
+..+|..|...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 566788888889999999999998887652 466788999999999999999999999988753 3345667777778
Q ss_pred HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006076 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELA 478 (662)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 478 (662)
+...++++.+...+....+.. +.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 889999999999999987643 446788999999999999999999999887 3344 678899999999999999999
Q ss_pred HHHHHHHHhcCCCC
Q 006076 479 ERASKRLFELEPTN 492 (662)
Q Consensus 479 ~~~~~~~~~~~p~~ 492 (662)
...++++++++|++
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999999875
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.31 E-value=9.2e-11 Score=117.89 Aligned_cols=199 Identities=11% Similarity=0.017 Sum_probs=122.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHHhcCC--------------------hHHHHHH
Q 006076 293 MVSVLQACAALAALEQGKMIHGYILRRGLD-SI----LPVVSALVTMYARCGK--------------------LELGQCV 347 (662)
Q Consensus 293 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~y~~~g~--------------------~~~A~~~ 347 (662)
+..+...+...|++++|...+..+.+.... ++ ..++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 334444444455555555555444332100 01 2245555556666666 5666555
Q ss_pred HhhCCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhcCCCHHHHHHH
Q 006076 348 FDHMDK-----R----DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV-SPS----PISFVSVLGACSHAGLVEEGKML 413 (662)
Q Consensus 348 ~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~ 413 (662)
+++..+ + ...+|..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|..+
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 554321 1 133667777777888888888888877664210 011 23666777778888888888888
Q ss_pred HHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhc-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 006076 414 FESMRKEHMIRPS----VEHYACMVDLLGRANKLEEAAKIIEDL-RI---EPG----PKVWGSLLGSCRIHCNVELAERA 481 (662)
Q Consensus 414 ~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 481 (662)
++...+...-.++ ...+..+...|...|++++|...+++. .. .++ ..++..+...+...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8877543211111 556778888888999999998888765 11 112 44677888889999999999999
Q ss_pred HHHHHhcCCC
Q 006076 482 SKRLFELEPT 491 (662)
Q Consensus 482 ~~~~~~~~p~ 491 (662)
+++++++.+.
T Consensus 326 ~~~a~~~~~~ 335 (338)
T 3ro2_A 326 AEKHLEISRE 335 (338)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=9.7e-12 Score=123.87 Aligned_cols=239 Identities=11% Similarity=0.074 Sum_probs=123.8
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhC-----CCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh------CC
Q 006076 253 VVSWSAMIACYARNGMAFEALELFREMIMESH-----DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR------GL 321 (662)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~ 321 (662)
..+|..+...|...|++++|+.+|+++..... .......++..+...+...|++++|...++.+++. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45677778888888888888888887731100 11122344455555556666666666666555443 11
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HhHH
Q 006076 322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH------GVSPS-PISF 394 (662)
Q Consensus 322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~ 394 (662)
.+ ....+|..+...|...|++++|++.|++..+. +-.|+ ...+
T Consensus 107 ~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp CH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Ch------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 11 11234444555555555555555555554442 11121 2345
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhHHhc-----C-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC----------CCCC
Q 006076 395 VSVLGACSHAGLVEEGKMLFESMRKEH-----M-IRPSVEHYACMVDLLGRANKLEEAAKIIEDLR----------IEPG 458 (662)
Q Consensus 395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~ 458 (662)
..+...+...|++++|.++++.+.+.. + -+.....+..+...|.+.|++++|.+.++++- ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 555556666666666666666554320 0 11123455666666666666666666665541 0111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 459 -------PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 459 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
...+..+...+...+.+.++...+++.....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111222233344455566666677777777777777888888888888888888888887654
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=6.5e-11 Score=130.86 Aligned_cols=162 Identities=16% Similarity=0.217 Sum_probs=136.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 006076 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV 434 (662)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 434 (662)
..+|+.|...|.+.|++++|++.|++..+ +.|+ ..++..+..++.+.|++++|.+.|++..+.. +-+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 45788888888888888888888888887 4555 4678888888888999999999998887542 23577888899
Q ss_pred HHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHH
Q 006076 435 DLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512 (662)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (662)
.+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++.+|..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999998876 4445 5778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 006076 513 KRVKRLLEA 521 (662)
Q Consensus 513 ~~~~~~m~~ 521 (662)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887644
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=2.6e-08 Score=108.80 Aligned_cols=422 Identities=8% Similarity=-0.008 Sum_probs=283.5
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCC---ccHHHHHHHHH
Q 006076 99 ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGR---GEEVLELYRRM 172 (662)
Q Consensus 99 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m 172 (662)
-...++..+... +.|...|..++..+.+.+.++.+..+|+.+.. .....|...+..-.+.|. ++.+.++|++.
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 334445555554 46889999999999999999999999998764 355678888888888888 99999999999
Q ss_pred hhCCCCCCCChhhHHHHHHHHHhCCCC----ccchHHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHHHh---------cC
Q 006076 173 NGTGTGIRSDRFTYTYVLKACVASSCG----FSLLKHGKEIHASVLRH-GY-NGI-VHIMTTLIDMYAR---------FG 236 (662)
Q Consensus 173 ~~~~~g~~p~~~t~~~ll~~~~~~~~~----~~~~~~a~~~~~~~~~~-g~-~~~-~~~~~~li~~y~~---------~g 236 (662)
+... ...|+...+..-+.-..+.++. .+..+..+++|+.++.. |. .++ ..+|...+..... .+
T Consensus 130 l~~~-~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 130 LSKE-LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp TCSS-SCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHhc-CCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 8761 1137777666666544443331 11134456788776653 66 554 5788888876542 34
Q ss_pred CHHHHHHHHHcCCC-C--CH-hHHH---HHHHHHH----------HcCChhHHHHHHHHHhhhhCCCc------------
Q 006076 237 CVMYAGFVFSQMAV-K--NV-VSWS---AMIACYA----------RNGMAFEALELFREMIMESHDLC------------ 287 (662)
Q Consensus 237 ~~~~A~~~f~~~~~-~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~~~~~~------------ 287 (662)
+++.+.++|++... | +. ..|. .+...+. ....++.|...+.++.....++.
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 57889999998764 2 11 2332 2222110 01123344555544321111211
Q ss_pred ---C-----CH---HHHHHHHHHHHccC-------CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH-HHH
Q 006076 288 ---P-----NS---VTMVSVLQACAALA-------ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ-CVF 348 (662)
Q Consensus 288 ---p-----~~---~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~ 348 (662)
| +. ..|...+.---..+ ..+....+|++++... +.+..+|-..+..+...|+.++|. ++|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 00 12222222211111 1234566788887763 447788888888888999999996 999
Q ss_pred hhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC------------HhHHHHHHHHHhcC
Q 006076 349 DHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV---------SPS------------PISFVSVLGACSHA 404 (662)
Q Consensus 349 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~ 404 (662)
++... .+...|-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 87653 3556788888889999999999999999886410 142 23577777777788
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006076 405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN-KLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELAERA 481 (662)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 481 (662)
|..+.|+.+|....+..+ .+....|...+.+-.+.| +.+.|..+|+.. ..+.+...|...+.-....|+.+.|..+
T Consensus 448 ~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp HCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999986411 123445554444444554 599999999977 2334677888888888889999999999
Q ss_pred HHHHHhcCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 482 SKRLFELEPT---NAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 482 ~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
|++++...|+ ....+...++.-.+.|..+.+.++.+++.+.-.
T Consensus 527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999998773 345677777778899999999999999987543
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.26 E-value=1.6e-10 Score=119.13 Aligned_cols=221 Identities=7% Similarity=-0.071 Sum_probs=124.2
Q ss_pred HHccCCHHHHHHHHHHHHHhC--CCC---chhHHHHHHHHHHhcCChHHHHHHHhhCCC-----C-----ChhHHHHHHH
Q 006076 300 CAALAALEQGKMIHGYILRRG--LDS---ILPVVSALVTMYARCGKLELGQCVFDHMDK-----R-----DVVSWNSLIS 364 (662)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~g--~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~-----~~~~~~~li~ 364 (662)
+...|++++|...+..+.+.- .+. ...++..+...|...|++++|...+++..+ + ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 344555555555555554320 111 123455555666666666665555554331 1 1235666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCCH----hHHHHHHHHHhcCCCHHHHHHHHHHhHHh---cCC-CCChHHHHHHHH
Q 006076 365 SYGVHGYGGKAIQIFKEMIYHGV-SPSP----ISFVSVLGACSHAGLVEEGKMLFESMRKE---HMI-RPSVEHYACMVD 435 (662)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~~~li~ 435 (662)
.|...|++++|++.|++..+... .++. .++..+...+...|++++|.+.++...+. .+- +....++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 67777777777777766654210 0111 35666666777777777777777766531 011 223456667777
Q ss_pred HHhhcCCHHHHHHHHHhc-CC-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 006076 436 LLGRANKLEEAAKIIEDL-RI-----EPG-PKVWGSLLGSCRIHCN---VELAERASKRLFELEPTNAGNYVLLADVYAA 505 (662)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (662)
.|.+.|++++|...+++. .+ .|. ...+..+...+...|+ .++|...+++. ...|.....+..|+.+|.+
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 777777777777777654 10 111 1224455556666666 55555555554 2223334566678888888
Q ss_pred cCChHHHHHHHHHHHh
Q 006076 506 ADMWDEVKRVKRLLEA 521 (662)
Q Consensus 506 ~g~~~~A~~~~~~m~~ 521 (662)
.|++++|...+++..+
T Consensus 352 ~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888777654
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=3.6e-10 Score=102.66 Aligned_cols=160 Identities=13% Similarity=0.010 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 006076 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438 (662)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 438 (662)
|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 3334444444444444444444443321 1233344444445555555555555555554321 234455555666666
Q ss_pred hcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 006076 439 RANKLEEAAKIIEDL-R-IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK 516 (662)
Q Consensus 439 ~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (662)
..|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666554 1 12355666667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHh
Q 006076 517 RLLEA 521 (662)
Q Consensus 517 ~~m~~ 521 (662)
++..+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=7.5e-10 Score=110.39 Aligned_cols=212 Identities=9% Similarity=0.040 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCh-------HHHHHHHhhCCC---C-ChhHHHHHHHHHHh
Q 006076 307 EQGKMIHGYILRRGLDSILPVVSALVTMYA-------RCGKL-------ELGQCVFDHMDK---R-DVVSWNSLISSYGV 368 (662)
Q Consensus 307 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~m~~---~-~~~~~~~li~~~~~ 368 (662)
+.|..+|+.+++.. +.++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888888764 456778888887776 35886 899999997653 3 55689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh-hcCCHHH
Q 006076 369 HGYGGKAIQIFKEMIYHGVSPSPI--SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG-RANKLEE 445 (662)
Q Consensus 369 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 445 (662)
.|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|..+|+...+.. +++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 567543 78889999999999999999999997532 345556655544432 3699999
Q ss_pred HHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006076 446 AAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFEL---EPT-NAGNYVLLADVYAAADMWDEVKRVKRLL 519 (662)
Q Consensus 446 A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (662)
|..+|++. .. +.+...|..++..+...|+.++|..+++++++. .|+ ....+..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 22 236788999999999999999999999999985 453 5668888999999999999999999998
Q ss_pred HhCC
Q 006076 520 EARG 523 (662)
Q Consensus 520 ~~~~ 523 (662)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8754
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=8.8e-10 Score=113.64 Aligned_cols=292 Identities=8% Similarity=-0.006 Sum_probs=207.7
Q ss_pred HhCCCCccchHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHH--hcCCHHHHH-----------HHHHcCCCC--CHh
Q 006076 194 VASSCGFSLLKHGKEIHASVLRHG--Y--NGIVHIMTTLIDMYA--RFGCVMYAG-----------FVFSQMAVK--NVV 254 (662)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~--~~g~~~~A~-----------~~f~~~~~~--~~~ 254 (662)
.+.++ +++|.++.+.+.+.- . .++...|-.++..-. -.+.++.+. ..++.+... +..
T Consensus 23 i~~~~----~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~ 98 (383)
T 3ulq_A 23 IRRFS----IPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLT 98 (383)
T ss_dssp HHTTC----HHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHH
T ss_pred HHHcC----HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCch
Confidence 34566 999999999986642 2 233444444443211 223333444 555554321 111
Q ss_pred ------HHHHHHHHHHHcCChhHHHHHHHHHhhhhCCC--cC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-C-
Q 006076 255 ------SWSAMIACYARNGMAFEALELFREMIMESHDL--CP-NSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-S- 323 (662)
Q Consensus 255 ------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~- 323 (662)
.|......+...|++++|+..|++........ .+ ...++..+...+...|+++.|...+..+.+.-.. +
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 12235566788999999999999884211111 11 2356778888899999999999999998765211 1
Q ss_pred ----chhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----C
Q 006076 324 ----ILPVVSALVTMYARCGKLELGQCVFDHMDK-----RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYH----G 386 (662)
Q Consensus 324 ----~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g 386 (662)
...+++.+...|...|++++|...|++..+ ++ ..+|+.+...|...|++++|++.|++..+. +
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 245788899999999999999999987652 22 247888999999999999999999998772 3
Q ss_pred CCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcC---CCCChHHHHHHHHHHhhcCC---HHHHHHHHHhcCCCCC-
Q 006076 387 VSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHM---IRPSVEHYACMVDLLGRANK---LEEAAKIIEDLRIEPG- 458 (662)
Q Consensus 387 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~- 458 (662)
..| ...++..+...+...|++++|...++...+... -+.....+..+...|...|+ +++|+.++++.+..|+
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 338 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADL 338 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHH
Confidence 323 346788888999999999999999998764321 11123346778889999999 9999999999864443
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076 459 PKVWGSLLGSCRIHCNVELAERASKRLFELE 489 (662)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (662)
...+..+...|...|++++|...+++++++.
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3467788899999999999999999998754
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=4.4e-11 Score=119.06 Aligned_cols=242 Identities=11% Similarity=0.070 Sum_probs=144.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--------C---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhh----
Q 006076 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--------K---NVVSWSAMIACYARNGMAFEALELFREMIMES---- 283 (662)
Q Consensus 219 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---- 283 (662)
+.+..++..+...|...|++++|..+|+++.+ . ...+|..+...|...|++++|+..|++.....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 33567888999999999999999999988753 2 34578889999999999999999999984221
Q ss_pred -CCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC------CCC-chhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 006076 284 -HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG------LDS-ILPVVSALVTMYARCGKLELGQCVFDHMDKRD 355 (662)
Q Consensus 284 -~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g------~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 355 (662)
........++..+...+...|++++|...+..+++.. ..| ...++..+...|.+.|++++|.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~---------- 173 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE---------- 173 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH----------
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH----------
Confidence 1112235567777778888888888888888776541 111 2233444444455555555444
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc------C
Q 006076 356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYH------GVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEH------M 422 (662)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~ 422 (662)
++|+++... +-.|+ ..++..+...+...|++++|..+++.+.+.. .
T Consensus 174 ---------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 174 ---------------------YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp ---------------------HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ---------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 444444332 11121 1234444555555555555555555554210 0
Q ss_pred CCC-------ChHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076 423 IRP-------SVEHYACMVDLLGRANKLEEAAKIIEDLR-IEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 423 ~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (662)
..+ ....+..+...+...+.+.+|...+.... ..| +..+|..+...|...|++++|...+++++++.|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 011 12223333344455556666666666653 223 4567888899999999999999999999887764
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=1.4e-08 Score=104.02 Aligned_cols=258 Identities=12% Similarity=-0.028 Sum_probs=153.5
Q ss_pred HHHHcCChhHHHHHHHHHhhhhCCCcCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-Cc----hhHHHHHH
Q 006076 262 CYARNGMAFEALELFREMIMESHDLCPNSV----TMVSVLQACAALAALEQGKMIHGYILRRGLD-SI----LPVVSALV 332 (662)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li 332 (662)
.+...|++++|...+++.. ...-..+.. ++..+...+...|++++|...+....+.... .+ ..+...+.
T Consensus 23 ~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLAL--EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH--HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3444555555555555542 211011111 2233334444555666665555555432100 11 12344566
Q ss_pred HHHHhcCChHHHHHHHhhCCC----------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHhHHHHH
Q 006076 333 TMYARCGKLELGQCVFDHMDK----------R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS--P--SPISFVSV 397 (662)
Q Consensus 333 ~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~l 397 (662)
..|...|++++|...+++..+ | ....+..+...|...|++++|...+++....... | ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 666777777777766665431 1 1234556677777888888888888877663221 1 12456666
Q ss_pred HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHHhcC-CCCC-----HHHHHHHH
Q 006076 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA-----CMVDLLGRANKLEEAAKIIEDLR-IEPG-----PKVWGSLL 466 (662)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll 466 (662)
...+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 6777788888888888887754321111111111 23345778899999998888772 1221 23566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 467 GSCRIHCNVELAERASKRLFELEPT------NAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
..+...|+.++|...++++.+..+. ....+..++.+|...|+.++|...++....
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888889999999999888764322 123667788899999999999998887654
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=1.9e-09 Score=97.89 Aligned_cols=167 Identities=11% Similarity=-0.014 Sum_probs=143.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076 325 LPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401 (662)
Q Consensus 325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (662)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778889999999999999998874 467789999999999999999999999998852 34567888888899
Q ss_pred hcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 006076 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAE 479 (662)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~ 479 (662)
...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|.+.+++. .. +.+..+|..+...+...|+.++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999997653 457888999999999999999999999987 22 346788999999999999999999
Q ss_pred HHHHHHHhcCCCCcc
Q 006076 480 RASKRLFELEPTNAG 494 (662)
Q Consensus 480 ~~~~~~~~~~p~~~~ 494 (662)
..++++++..|++..
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 999999998887654
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=1.2e-09 Score=112.39 Aligned_cols=222 Identities=9% Similarity=-0.033 Sum_probs=143.0
Q ss_pred HHHccCCHHHHHHHHHHHHHhCC-CC----chhHHHHHHHHHHhcCChHHHHHHHhhCCC-----C-----ChhHHHHHH
Q 006076 299 ACAALAALEQGKMIHGYILRRGL-DS----ILPVVSALVTMYARCGKLELGQCVFDHMDK-----R-----DVVSWNSLI 363 (662)
Q Consensus 299 a~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~-----~~~~~~~li 363 (662)
.+...|++++|...+..+.+... .+ ...++..+...|...|+++.|...+++..+ + ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34566777777777777664311 11 234666677777777877777766665431 1 134677778
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc---CCCCChHHHHHHHH
Q 006076 364 SSYGVHGYGGKAIQIFKEMIYH----GVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEH---MIRPSVEHYACMVD 435 (662)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~ 435 (662)
..|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|.+.++...+.. +-+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 8888888888888888776652 1111 12456677777888888888888888776411 12233667778888
Q ss_pred HHhhcCCHHHHHHHHHhc----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 006076 436 LLGRANKLEEAAKIIEDL----RI--EPG-PKVWGSLLGSCRIHCN---VELAERASKRLFELEPTNAGNYVLLADVYAA 505 (662)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (662)
.|.+.|++++|...+++. +. .|. ...+..+...+...++ .++|...+++. ...|.....+..++..|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 888888888888888765 11 122 2334455555666666 66666666552 1223334566778889999
Q ss_pred cCChHHHHHHHHHHHh
Q 006076 506 ADMWDEVKRVKRLLEA 521 (662)
Q Consensus 506 ~g~~~~A~~~~~~m~~ 521 (662)
.|++++|.+.+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999888887653
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=1.8e-09 Score=102.24 Aligned_cols=204 Identities=10% Similarity=0.006 Sum_probs=150.0
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHH
Q 006076 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-DVVSWNSLIS 364 (662)
Q Consensus 288 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~ 364 (662)
.|+..+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|.+.|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355677777888888999999999999998887546767777788889999999999998887652 3 4567888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-H-------hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC---hHHHHHH
Q 006076 365 SYGVHGYGGKAIQIFKEMIYHGVSPS-P-------ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS---VEHYACM 433 (662)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 433 (662)
.|...|++++|++.|++..+. .|+ . ..|..+...+...|++++|.+.|+...+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999988874 444 3 3466677778888999999999988864 3454 5677777
Q ss_pred HHHHhhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076 434 VDLLGRANKLEEAAKIIEDLR--IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503 (662)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (662)
...|...|+. +++++. ...+...|.... ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777665543 223221 122344444333 23446689999999999999999887777666554
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.13 E-value=2e-09 Score=101.96 Aligned_cols=188 Identities=10% Similarity=-0.082 Sum_probs=112.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCC---C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHH
Q 006076 324 ILPVVSALVTMYARCGKLELGQCVFDHMD---K-RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVL 398 (662)
Q Consensus 324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 398 (662)
|+..+..+...|.+.|++++|...|++.. . ++...|..+..+|...|++++|++.|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 44566666666777777777777766553 2 4555565566667777777777777777666 34433 4556666
Q ss_pred HHHhcCCCHHHHHHHHHHhHHhcCCCCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC---HHHHHHHHH
Q 006076 399 GACSHAGLVEEGKMLFESMRKEHMIRPSV-------EHYACMVDLLGRANKLEEAAKIIEDL-RIEPG---PKVWGSLLG 467 (662)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~ 467 (662)
.++...|++++|...++...+.. +.+. ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 66667777777777777666432 2233 34566666666666777777666665 34454 344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
.+.. .+...++++..+.+.++..|..+ .....|.+++|...+++..+.
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 5432 33444555555555544444332 233445568999999888763
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.09 E-value=2.7e-09 Score=113.11 Aligned_cols=207 Identities=10% Similarity=0.025 Sum_probs=150.4
Q ss_pred hhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 006076 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL-EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347 (662)
Q Consensus 269 ~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 347 (662)
.++++..+.+. ... .+.+...+..+..++...|++ ++|...++.+++.. +.+...+..+...|.+.|++++|.+.
T Consensus 84 ~~~al~~l~~~--~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEV--LGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHH--HTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHH--hcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45566666655 221 123556666677777777888 88888888777764 33467778888888888888888888
Q ss_pred HhhCC--CCChhHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcC--------CCH
Q 006076 348 FDHMD--KRDVVSWNSLISSYGVH---------GYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHA--------GLV 407 (662)
Q Consensus 348 ~~~m~--~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~--------g~~ 407 (662)
|++.. .|+...|..+...|... |++++|++.|++..+. .| +...+..+..++... |++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 88765 36667778888888888 8888888888888874 34 456777777777777 888
Q ss_pred HHHHHHHHHhHHhcCCC---CChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006076 408 EEGKMLFESMRKEHMIR---PSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERAS 482 (662)
Q Consensus 408 ~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 482 (662)
++|...|+...+.. + .+...|..+...|.+.|++++|.+.|++. ...| +...|..+...+...|+.++|...+
T Consensus 238 ~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888887532 2 36778888888888888888888888876 3334 5567777778888878777777654
Q ss_pred H
Q 006076 483 K 483 (662)
Q Consensus 483 ~ 483 (662)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.08 E-value=1e-07 Score=97.77 Aligned_cols=290 Identities=11% Similarity=0.039 Sum_probs=203.5
Q ss_pred HhCCCCccchHHHHHHHHHHHHhC--CC--CchhHHHHHHHHHH--hcCCHHHHH---------HHHHcCC---CC--CH
Q 006076 194 VASSCGFSLLKHGKEIHASVLRHG--YN--GIVHIMTTLIDMYA--RFGCVMYAG---------FVFSQMA---VK--NV 253 (662)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~g--~~--~~~~~~~~li~~y~--~~g~~~~A~---------~~f~~~~---~~--~~ 253 (662)
....+ +++|.++.+.+.+.. .+ ++...|-.|+..-. -.+.+..+. ..++.+. .+ +.
T Consensus 23 i~~~~----~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 98 (378)
T 3q15_A 23 IRQFS----VPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGL 98 (378)
T ss_dssp HHTTC----HHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHH
T ss_pred HHHcC----HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccH
Confidence 45566 999999999887642 22 33444455544311 112222222 4444432 22 11
Q ss_pred h---HHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC--C--
Q 006076 254 V---SWSAMIACYARNGMAFEALELFREMIMESHDLCPN----SVTMVSVLQACAALAALEQGKMIHGYILRRGL--D-- 322 (662)
Q Consensus 254 ~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~-- 322 (662)
. .|......+...|++++|+..|++....... .++ ..++..+...+...|+++.|...+..+.+... .
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 177 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF-VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY 177 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc
Confidence 1 2333445678899999999999988421111 133 35677788888999999999999998876421 1
Q ss_pred --CchhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC
Q 006076 323 --SILPVVSALVTMYARCGKLELGQCVFDHMDK-----RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYH----GV 387 (662)
Q Consensus 323 --~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~ 387 (662)
....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++.... +.
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 1245778899999999999999999887652 22 347888999999999999999999998761 22
Q ss_pred CCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHhhcCC---HHHHHHHHHhcCCCCC-HH
Q 006076 388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI---RPSVEHYACMVDLLGRANK---LEEAAKIIEDLRIEPG-PK 460 (662)
Q Consensus 388 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~ 460 (662)
+....++..+...+.+.|++++|..+++...+...- +.....+..+...|...|+ +++|+..+++.+..|+ ..
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~ 337 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEA 337 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHH
Confidence 223567888889999999999999999998764321 1224456777788888888 9999999998754443 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076 461 VWGSLLGSCRIHCNVELAERASKRLFEL 488 (662)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (662)
.+..+...|...|+.++|...++++++.
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5667888999999999999999988764
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.03 E-value=4.1e-09 Score=102.89 Aligned_cols=221 Identities=11% Similarity=0.094 Sum_probs=155.2
Q ss_pred HccCCHHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC----------C-ChhHHHHH
Q 006076 301 AALAALEQGKMIHGYILRR-------GLDSILPVVSALVTMYARCGKLELGQCVFDHMDK----------R-DVVSWNSL 362 (662)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~l 362 (662)
...|++++|...++.+++. ..+....++..+...|...|++++|...|++..+ | ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567778888887777653 2223467888899999999999999999887641 1 34578889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc-----C-CCCChHH
Q 006076 363 ISSYGVHGYGGKAIQIFKEMIYH------GVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEH-----M-IRPSVEH 429 (662)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~ 429 (662)
...|...|++++|++.|++.... .-.| ...++..+...+...|++++|..+++...+.. + -+.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1123 24677888889999999999999999887541 0 1224567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC----------CCC-CHHHHHHHHHHHHhcCCHHHH------HHHHHHHHhcCCCC
Q 006076 430 YACMVDLLGRANKLEEAAKIIEDLR----------IEP-GPKVWGSLLGSCRIHCNVELA------ERASKRLFELEPTN 492 (662)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~----------~~p-~~~~~~~ll~~~~~~g~~~~a------~~~~~~~~~~~p~~ 492 (662)
+..+...|.+.|++++|...+++.- ..+ ....|..+.......+....+ ...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999988761 122 223344444444333332222 22222222233455
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 493 AGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
+.++..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66888999999999999999999998764
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.01 E-value=2.6e-09 Score=118.15 Aligned_cols=162 Identities=14% Similarity=0.175 Sum_probs=130.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHH
Q 006076 324 ILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLG 399 (662)
Q Consensus 324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 399 (662)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 356777788888888888888888887652 3567888888888889999999999988887 4554 567888888
Q ss_pred HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 006076 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVEL 477 (662)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 477 (662)
++...|++++|.+.|++..+.. +-+...|+.+..+|.+.|++++|++.|++. .+.| +...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 8889999999999998887642 335778889999999999999999998876 4455 56788889999999999999
Q ss_pred HHHHHHHHHhcC
Q 006076 478 AERASKRLFELE 489 (662)
Q Consensus 478 a~~~~~~~~~~~ 489 (662)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999988887654
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.01 E-value=2e-07 Score=95.30 Aligned_cols=224 Identities=10% Similarity=-0.031 Sum_probs=118.5
Q ss_pred HHHHhcCCccHHHHHHHHHhhCCCCCCCChh----hHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCC-CCc----hhH
Q 006076 154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRF----TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY-NGI----VHI 224 (662)
Q Consensus 154 ~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~----t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~ 224 (662)
..+...|++++|...+++.... .-..+.. ++..+-..+...++ ++.|.+.+...++..- .++ ..+
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGE----LTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3455677777777777776654 2111111 23333344445566 7777766666554321 111 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCC----------C-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcC--CHH
Q 006076 225 MTTLIDMYARFGCVMYAGFVFSQMAV----------K-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP--NSV 291 (662)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p--~~~ 291 (662)
.+.+...|...|++++|...|++... + ....+..+...+...|++++|...+.+.........| ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45566677777777777777765421 1 1234555666777777777777777766321111111 123
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCChHHHHHHHhhCCCCC-------hhH
Q 006076 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSIL-PVVS-----ALVTMYARCGKLELGQCVFDHMDKRD-------VVS 358 (662)
Q Consensus 292 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~-----~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~ 358 (662)
++..+...+...|++++|...++...+..-.++. ..+. ..+..+...|++++|...+++...++ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 4555555666677777777777666544211111 1111 22333556666666666666655321 113
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 359 WNSLISSYGVHGYGGKAIQIFKEMI 383 (662)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~ 383 (662)
+..+...+...|++++|...+++..
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555666666666555543
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=4.3e-08 Score=94.86 Aligned_cols=182 Identities=12% Similarity=-0.037 Sum_probs=113.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HhHHH
Q 006076 324 ILPVVSALVTMYARCGKLELGQCVFDHMDK--RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV-SPS-PISFV 395 (662)
Q Consensus 324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 395 (662)
+...+-.+...+.+.|++++|...|+++.+ |+ ...|..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344555566666667777777777766653 22 34566666666677777777777776666321 111 23344
Q ss_pred HHHHHHhc--------CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006076 396 SVLGACSH--------AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG 467 (662)
Q Consensus 396 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 467 (662)
.+..++.. .|++++|...|+.+.+.+ +.+......+.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 45555555 666666666666665432 11222221111111000000 112456778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhc----------CChHHHHHHHHHHHhC
Q 006076 468 SCRIHCNVELAERASKRLFELEPTNA---GNYVLLADVYAAA----------DMWDEVKRVKRLLEAR 522 (662)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 522 (662)
.+...|++++|...++++++..|+++ ..+..++.+|... |++++|...++++.+.
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 89999999999999999999999854 4788899999877 9999999999998864
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=8.4e-09 Score=101.81 Aligned_cols=201 Identities=12% Similarity=0.007 Sum_probs=145.5
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-------C--ChhHHHHHHHHHHhcCChHHH
Q 006076 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK-------R--DVVSWNSLISSYGVHGYGGKA 375 (662)
Q Consensus 305 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~--~~~~~~~li~~~~~~g~~~~A 375 (662)
++++|...+..+ ...|...|++++|...|.+..+ + ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 4467788999998888876542 1 145889999999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HhHHHHHHHHHhcC-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHH
Q 006076 376 IQIFKEMIYHGVS-PS----PISFVSVLGACSHA-GLVEEGKMLFESMRKEHMIRPS----VEHYACMVDLLGRANKLEE 445 (662)
Q Consensus 376 ~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 445 (662)
+..|++....... .+ ..++..+..++... |++++|...|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999888763111 11 35788888899996 9999999999998753210111 4578899999999999999
Q ss_pred HHHHHHhc-CCCCC---H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-----HHHHHHHHH--hcCCh
Q 006076 446 AAKIIEDL-RIEPG---P-----KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN-----YVLLADVYA--AADMW 509 (662)
Q Consensus 446 A~~~~~~m-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 509 (662)
|+..|++. ...|+ . ..|..+..++...|++++|...+++.++++|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 22232 1 157778888999999999999999999999975543 344566664 45778
Q ss_pred HHHHHHHHHHH
Q 006076 510 DEVKRVKRLLE 520 (662)
Q Consensus 510 ~~A~~~~~~m~ 520 (662)
++|.+.++.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888875443
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=3.9e-08 Score=83.58 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 437 (662)
.|..+...|...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+++.+.+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence 34555555555566666666665555432 1233344444444444555555555555443321
Q ss_pred hhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 006076 438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517 (662)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 517 (662)
+.+...|..+...+...|++++|...++++.+..|.++..+..++.+|.+.|++++|...++
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 22344455555555556666666666666666666555566666666666666666666666
Q ss_pred HHHh
Q 006076 518 LLEA 521 (662)
Q Consensus 518 ~m~~ 521 (662)
++..
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5544
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.90 E-value=3e-09 Score=93.39 Aligned_cols=141 Identities=9% Similarity=-0.042 Sum_probs=105.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006076 364 SSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK 442 (662)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 442 (662)
..+...|++++|++.+..... ..|+ ...+..+...|.+.|++++|.+.|+...+.. +.+...|..+...|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence 344556777777777777654 2333 3455567777888888888888888877542 3367788888888888888
Q ss_pred HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076 443 LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAER-ASKRLFELEPTNAGNYVLLADVYAAADM 508 (662)
Q Consensus 443 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (662)
+++|...|++. .+.| +...|..+...+...|+.++|.. .++++++++|+++.+|.....++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888876 3445 57788888889999998876655 4689999999999999998888888775
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=2.1e-07 Score=90.28 Aligned_cols=162 Identities=12% Similarity=0.019 Sum_probs=82.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-----ChH
Q 006076 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-----SVE 428 (662)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~ 428 (662)
+..++..+..+|...|++++|++++.+....|..+ +...+..++..+.+.|+++.|.+.++.|.+. .| +..
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~ 175 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNE 175 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchH
Confidence 33344455555555666666666665554433211 2234445555556666666666666665432 34 233
Q ss_pred HHHHHHHH--HhhcC--CHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCCCc
Q 006076 429 HYACMVDL--LGRAN--KLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL----------EPTNA 493 (662)
Q Consensus 429 ~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------~p~~~ 493 (662)
+...|..+ ....| +.++|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+. +|+++
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 33333333 22222 566666666665 22343222233333555666666666666655544 35555
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 494 GNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.++..++.++...|+ +|.++++++.+
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 566555555555555 56666666654
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=6.8e-08 Score=82.05 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 006076 327 VVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403 (662)
Q Consensus 327 ~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (662)
.+..+...|...|++++|..+|+++. ..+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 56788999999999999999999875 3467789999999999999999999999998863 3356677788888888
Q ss_pred CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
.|++++|.++++.+.+.. +.+...+..+...|.+.|++++|...++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 999999999998887542 334566666667777777777776666654
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.90 E-value=2.7e-08 Score=98.11 Aligned_cols=167 Identities=11% Similarity=-0.020 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-C----
Q 006076 326 PVVSALVTMYARCGKLELGQCVFDHMDK-----RD----VVSWNSLISSYGVH-GYGGKAIQIFKEMIYHGVSP-S---- 390 (662)
Q Consensus 326 ~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~---- 390 (662)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 3455555555555555555555544331 11 24677777778775 88888888888776621100 1
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHH----
Q 006076 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV-----EHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPK---- 460 (662)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~---- 460 (662)
..++..+...+...|++++|...|+...+...-.+.. ..|..+...+...|++++|...+++. .+.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 2456777778888888888888888876532111111 15667777888888888888888876 3444321
Q ss_pred --HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCC
Q 006076 461 --VWGSLLGSCR--IHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 461 --~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
.+..++.++. ..+++++|...++++..++|..
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2344555554 3456777777777777777654
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.89 E-value=2.8e-08 Score=96.17 Aligned_cols=201 Identities=12% Similarity=0.031 Sum_probs=144.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCChHHHHHHHhhCCC--C---C-hhHHH
Q 006076 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS--ILPVVSALVTMYARCGKLELGQCVFDHMDK--R---D-VVSWN 360 (662)
Q Consensus 289 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~---~-~~~~~ 360 (662)
+...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|+...+ | . ..+|.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45666777778889999999999999998874221 166788899999999999999999998763 3 2 34677
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 006076 361 SLISSYGV--------HGYGGKAIQIFKEMIYHGVSPSPI-SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431 (662)
Q Consensus 361 ~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 431 (662)
.+..+|.. .|++++|+..|++..+. .|+.. ... +...+...... -...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~--------------a~~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDD--------------ATQKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHH--------------HHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHH--------------HHHHHHHHHHH-----HHHHHH
Confidence 78888888 99999999999999984 45432 221 11111111111 122356
Q ss_pred HHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcc--
Q 006076 432 CMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSCRIH----------CNVELAERASKRLFELEPTNAG-- 494 (662)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~-- 494 (662)
.+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6788888999999999998876 22333 34667777777765 8899999999999999998754
Q ss_pred -hHHHHHHHHHhcCChH
Q 006076 495 -NYVLLADVYAAADMWD 510 (662)
Q Consensus 495 -~~~~l~~~~~~~g~~~ 510 (662)
++..+..++.+.|+++
T Consensus 233 ~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 233 TAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 3344555554444443
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.88 E-value=3.4e-08 Score=96.23 Aligned_cols=199 Identities=9% Similarity=0.046 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---------
Q 006076 290 SVTMVSVLQACAALAALEQGKMIHGYILRR------GL-DSILPVVSALVTMYARCGKLELGQCVFDHMDK--------- 353 (662)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------- 353 (662)
..++..+...+...|++++|...+..+++. +- +....++..+...|...|++++|...|++..+
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555556666666666666666666543 21 22355778888899999999999988887642
Q ss_pred -C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc---
Q 006076 354 -R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYH------GVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEH--- 421 (662)
Q Consensus 354 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--- 421 (662)
| ...+|..+...|...|++++|+..|++..+. +-.|+ ..++..+...+...|++++|..+++...+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2 2457888999999999999999999999874 11333 3578888899999999999999999987531
Q ss_pred ---CCCC-ChHHHHHHHHHHhhc------CCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076 422 ---MIRP-SVEHYACMVDLLGRA------NKLEEAAKIIEDLR-IEP-GPKVWGSLLGSCRIHCNVELAERASKRLFEL 488 (662)
Q Consensus 422 ---~~~~-~~~~~~~li~~~~~~------g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (662)
...+ ....+..+...+... ..+.++...++... ..| ...++..+...+...|++++|...++++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1112 222333333333332 23455555555553 223 3457888999999999999999999998875
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=2.6e-07 Score=87.09 Aligned_cols=181 Identities=12% Similarity=-0.001 Sum_probs=113.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh----HH
Q 006076 325 LPVVSALVTMYARCGKLELGQCVFDHMDK--RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI----SF 394 (662)
Q Consensus 325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 394 (662)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 33455566667777888888888877652 32 235667777788888888888888887774 34321 23
Q ss_pred HHHHHHHhc------------------CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 006076 395 VSVLGACSH------------------AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 456 (662)
Q Consensus 395 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (662)
..+..++.. .|+.++|...|+.+.+.+ +-+...+.++..+ +.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----HHHHHHH---------
Confidence 333333332 344555555555554322 1111111111100 0000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA---GNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
......+...+...|++++|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112455678889999999999999999999875 5688999999999999999999999887654
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.84 E-value=4.8e-07 Score=87.80 Aligned_cols=239 Identities=10% Similarity=-0.036 Sum_probs=160.4
Q ss_pred HhcCCHHHHHHHHHcCCCCC-HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHH
Q 006076 233 ARFGCVMYAGFVFSQMAVKN-VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM 311 (662)
Q Consensus 233 ~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~ 311 (662)
.-.|++..+..-...+...+ ...-.-+.++|...|++... + .-.|....+..+. .|...+ +..
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~------~-----~~~~~~~a~~~la-~~~~~~----a~~ 87 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ------D-----PTSKLGKVLDLYV-QFLDTK----NIE 87 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC------C-----SSSTTHHHHHHHH-HHHTTT----CCH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC------C-----CCCHHHHHHHHHH-HHhccc----HHH
Confidence 34577777777555554322 22233345777777776531 1 1123332322222 222222 556
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006076 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK-----RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386 (662)
Q Consensus 312 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 386 (662)
.++..++.+ .++......+...|...|++++|.+++.+... .+...+..++..|.+.|+.+.|.+.+++|.+
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 666665554 34555556788889999999999999988743 2456788888999999999999999999988
Q ss_pred CCC-----CHhHHHHHHHHH--hc--CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-
Q 006076 387 VSP-----SPISFVSVLGAC--SH--AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI- 455 (662)
Q Consensus 387 ~~p-----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~- 455 (662)
..| +..+...+..++ .. .+++.+|..+|+++... .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467 366666676663 32 34899999999999754 355344444555899999999999998765 21
Q ss_pred ---------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 006076 456 ---------EP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495 (662)
Q Consensus 456 ---------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (662)
.| |+.+...++......|+ +|.++++++.+..|+++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 14 56666566666666776 8899999999999998643
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=1.5e-08 Score=112.39 Aligned_cols=168 Identities=8% Similarity=-0.123 Sum_probs=98.8
Q ss_pred HhcCChHHHHHHHhhCC-----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhc
Q 006076 336 ARCGKLELGQCVFDHMD-----------KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSH 403 (662)
Q Consensus 336 ~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 403 (662)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 44566666666555543 223445666666666666666666666666653 23 33455555666666
Q ss_pred CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 006076 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERA 481 (662)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 481 (662)
.|++++|.+.|++..+.. +.+...+..+...|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665432 2245566666666666666666 6666654 2233 455666666666666666666666
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076 482 SKRLFELEPTNAGNYVLLADVYAAADM 508 (662)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (662)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666666666666666666666655444
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=1.4e-07 Score=92.75 Aligned_cols=172 Identities=9% Similarity=-0.055 Sum_probs=132.6
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcC
Q 006076 344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHM 422 (662)
Q Consensus 344 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 422 (662)
..+.+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++.+.+.
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 334444444444556677778888899999999999998884 45 4467777888889999999999999888643
Q ss_pred CCCChHHHHHH-HHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchHH
Q 006076 423 IRPSVEHYACM-VDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN--AGNYV 497 (662)
Q Consensus 423 ~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~ 497 (662)
.|+....... ...+.+.++.++|...+++. ...| +...+..+...+...|+.++|...++++++.+|++ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 4554433333 33366777888888888776 2334 67889999999999999999999999999999987 77899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 006076 498 LLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
.|+.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999998887643
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=8.2e-07 Score=82.76 Aligned_cols=162 Identities=12% Similarity=-0.046 Sum_probs=123.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCC----CHHHHHHHHHHhHHhcCCCCChHH
Q 006076 354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG----LVEEGKMLFESMRKEHMIRPSVEH 429 (662)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~ 429 (662)
.++.++..+...|...+++++|++.|++..+.| +...+..+...+.. + ++++|.++|+...+ .-++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHH
Confidence 456667777777777788888888888877755 45566666666666 5 78888888888764 235677
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhc-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHH
Q 006076 430 YACMVDLLGR----ANKLEEAAKIIEDL-RIEPG---PKVWGSLLGSCRI----HCNVELAERASKRLFELEPTNAGNYV 497 (662)
Q Consensus 430 ~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (662)
+..|..+|.. .+++++|.++|++. ...|+ +..+..|...|.. .++.++|...+++..+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7788888876 78889999988887 33343 6778888888887 78899999999999888 55677888
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 006076 498 LLADVYAAA-D-----MWDEVKRVKRLLEARGL 524 (662)
Q Consensus 498 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 524 (662)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999998764 3 89999999998887653
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.73 E-value=4.1e-07 Score=100.85 Aligned_cols=190 Identities=11% Similarity=0.021 Sum_probs=149.2
Q ss_pred HccCCHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhc
Q 006076 301 AALAALEQGKMIHGYIL--------RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVH 369 (662)
Q Consensus 301 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 369 (662)
...|++++|.+.++.++ +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67889999999999888 32 244567888899999999999999999998763 4677999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 006076 370 GYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK 448 (662)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 448 (662)
|++++|++.|++..+. .| +...+..+..++.+.|++++ .+.|+...+.. +.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999984 45 45778888889999999999 99999998643 3467889999999999999999999
Q ss_pred HHHhc-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCcchH
Q 006076 449 IIEDL-RIEPG-PKVWGSLLGSCRIHCN-----VELAERASKRLFELEPTNAGNY 496 (662)
Q Consensus 449 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 496 (662)
.|++. ...|+ ...|..+..++...++ .+...++.+.+.++.+.++..+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99998 46675 5677777777766554 3444555555555655544443
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.72 E-value=1.1e-05 Score=85.34 Aligned_cols=342 Identities=11% Similarity=0.014 Sum_probs=174.8
Q ss_pred CChHHHHHHHhcCCC--CCcchHHHHHHHHHhcCC-ccHHHHHHHHHhhCCCCCCC-ChhhHHHHHHHHHhCCCCccchH
Q 006076 129 DSVDDARHVFDKTRR--RTIYVWNALFRALTLAGR-GEEVLELYRRMNGTGTGIRS-DRFTYTYVLKACVASSCGFSLLK 204 (662)
Q Consensus 129 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~ 204 (662)
|..+.+..+|++-.. |++..|...+.-..+.+. .+....+|+..+..- |..| +...+...+.-+.......+.++
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v-g~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF-ENYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHS-TTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc-CCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence 556666666654332 455566666555544442 344556666655431 3222 23333333333221111123377
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------cCCHHHHHHHHHcCCC----CCHhHHHHHHHHHHHcC
Q 006076 205 HGKEIHASVLRHGYNGIVHIMTTLIDMYAR-------------FGCVMYAGFVFSQMAV----KNVVSWSAMIACYARNG 267 (662)
Q Consensus 205 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g 267 (662)
.++.+++.+++.....-...|......-.. .+.+..|..+++.+.. .+...|...+.--..++
T Consensus 107 ~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~ 186 (493)
T 2uy1_A 107 KIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG 186 (493)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC
Confidence 788888888864222112233322221111 1122333433333221 13445655554432221
Q ss_pred C-------hhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006076 268 M-------AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK 340 (662)
Q Consensus 268 ~-------~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 340 (662)
. .+.+..+|++.+ .. .+.+...|...+.-+...|+.+.|+.+++.+++. +.+...+. .|+...+
T Consensus 187 ~~~~~~~~~~Rv~~~ye~al--~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 187 MKLGGRPHESRMHFIHNYIL--DS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHHH--HH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred ccCcchhhHHHHHHHHHHHH--Hc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 1 234566787773 22 2334556666666677788899999999998888 33433333 2333222
Q ss_pred hHHH-HHHHhhCC------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc-CCC
Q 006076 341 LELG-QCVFDHMD------------KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH-AGL 406 (662)
Q Consensus 341 ~~~A-~~~~~~m~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~ 406 (662)
.++. ..+.+... ......|...+..+.+.+..+.|..+|.+. .. ..++...|......-.. .++
T Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d 335 (493)
T 2uy1_A 258 EEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGS 335 (493)
T ss_dssp CTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCC
Confidence 2211 11221110 011234666666666667777888888777 21 11233333321111111 235
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006076 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF 486 (662)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (662)
++.|+.+|+...+.+ +.++..+...++...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++..
T Consensus 336 ~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 336 RATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777888888777653 2234556666777777778888888887763 246667777766666777777777666665
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.70 E-value=5.6e-07 Score=89.33 Aligned_cols=220 Identities=12% Similarity=0.036 Sum_probs=153.3
Q ss_pred cCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 006076 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345 (662)
Q Consensus 266 ~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 345 (662)
.|++++|.+++++......+ . + +...++++.|...+..+ ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~---~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT---S---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---C---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc---c---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 56778888888877311111 1 0 11146677776666554 45677888888888
Q ss_pred HHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HhHHHHHHHHHhcCCCHHHHH
Q 006076 346 CVFDHMDK-----RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV---SPS--PISFVSVLGACSHAGLVEEGK 411 (662)
Q Consensus 346 ~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~ 411 (662)
..|.+..+ .+ ..+|+.+...|...|++++|+..|++....-. .|. ..++..+...+.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 88776542 11 34788888999999999999999988765311 121 3567778888888 9999999
Q ss_pred HHHHHhHHhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC---CCC----HHHHHHHHHHHHhcCCHHHHH
Q 006076 412 MLFESMRKEHMIRP----SVEHYACMVDLLGRANKLEEAAKIIEDL-RI---EPG----PKVWGSLLGSCRIHCNVELAE 479 (662)
Q Consensus 412 ~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~ 479 (662)
..|+...+...-.. ...++..+...|.+.|++++|+..|++. .+ .++ ...+..+...+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998875321001 1467888999999999999999999876 11 122 235667777788889999999
Q ss_pred HHHHHHHhcCCCCcch-----HHHHHHHHHhcCChHHHHHH
Q 006076 480 RASKRLFELEPTNAGN-----YVLLADVYAAADMWDEVKRV 515 (662)
Q Consensus 480 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 515 (662)
..+++.+ +.|..... ...++..| ..|+.+.+..+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 98875432 33455555 56777666553
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=1.8e-07 Score=101.73 Aligned_cols=159 Identities=13% Similarity=0.065 Sum_probs=125.5
Q ss_pred cCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHH
Q 006076 338 CGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKML 413 (662)
Q Consensus 338 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 413 (662)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999998764 35778999999999999999999999999884 45 467888889999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 006076 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH---CNVELAERASKRLFEL 488 (662)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 488 (662)
++...+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998653 446789999999999999999999999987 3334 678889999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 006076 489 EPTNAGNYVLLA 500 (662)
Q Consensus 489 ~p~~~~~~~~l~ 500 (662)
+|++...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887776
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=8.8e-08 Score=83.65 Aligned_cols=100 Identities=12% Similarity=-0.011 Sum_probs=88.5
Q ss_pred CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076 423 IRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499 (662)
Q Consensus 423 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (662)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 344 4567888888999999999999999987 3344 688899999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 006076 500 ADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
+.+|.+.|++++|...+++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998864
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=3.7e-07 Score=99.23 Aligned_cols=147 Identities=10% Similarity=-0.035 Sum_probs=103.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 006076 303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIF 379 (662)
Q Consensus 303 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (662)
.|++++|...++.+++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888888888887653 33577888888889999999999999887653 35678888888999999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc---CCHHHHHHHHHhc
Q 006076 380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA---NKLEEAAKIIEDL 453 (662)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m 453 (662)
++..+.. +.+...+..+..++...|++++|.+.++...+.. +.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9888852 2345678888888899999999999999887642 34577888888888888 8999999888876
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.67 E-value=5.4e-07 Score=83.73 Aligned_cols=128 Identities=12% Similarity=0.064 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 006076 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438 (662)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 438 (662)
+.+...|.+.|++++|+..|++..+. .| +...+..+..++...|++++|...|+...+.. +.+...+..+...|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 34888899999999999999999884 45 45778888889999999999999999998643 346788888888887
Q ss_pred hcCC--HHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 439 RANK--LEEAAKIIEDLRIEPGP--KVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 439 ~~g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
..|. .+++...++... .|+. ..|..+..++...|++++|...+++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 445566666653 4443 344555666777899999999999999999973
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=2.7e-07 Score=83.14 Aligned_cols=75 Identities=12% Similarity=-0.026 Sum_probs=57.1
Q ss_pred HHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 446 AAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN--AGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 446 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
|...+++. ...| +...|..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44455444 2234 56778888888888888888888888888888764 4578888888888999988888887654
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.65 E-value=2.7e-08 Score=87.21 Aligned_cols=120 Identities=17% Similarity=0.083 Sum_probs=100.2
Q ss_pred HHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCH
Q 006076 399 GACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNV 475 (662)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 475 (662)
..+...|++++|+..++.... ..| +...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 345566889999999888753 234 3445677899999999999999999987 4445 678999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 006076 476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV-KRLLEA 521 (662)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 521 (662)
++|...++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887765 466654
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.64 E-value=4.2e-07 Score=81.89 Aligned_cols=156 Identities=8% Similarity=-0.040 Sum_probs=109.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH-Hhc
Q 006076 328 VSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA-CSH 403 (662)
Q Consensus 328 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 403 (662)
...+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 44456667788888888888888774 35667888888888888888888888877653 3433322221111 112
Q ss_pred CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 006076 404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG---PKVWGSLLGSCRIHCNVELAE 479 (662)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~ 479 (662)
.+...+|...++...+.. +.+...+..+...|...|++++|...|+++ ...|+ ...|..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222334677787776542 335788888889999999999999998876 44553 567888888899999999999
Q ss_pred HHHHHHHh
Q 006076 480 RASKRLFE 487 (662)
Q Consensus 480 ~~~~~~~~ 487 (662)
..+++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.63 E-value=1.5e-07 Score=82.12 Aligned_cols=97 Identities=10% Similarity=0.002 Sum_probs=85.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (662)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4567778888899999999999999877 2334 7788999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 006076 504 AAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~ 522 (662)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999987753
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.63 E-value=8e-07 Score=83.70 Aligned_cols=185 Identities=11% Similarity=-0.002 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCh----hHHH
Q 006076 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS--ILPVVSALVTMYARCGKLELGQCVFDHMDK--RDV----VSWN 360 (662)
Q Consensus 289 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~----~~~~ 360 (662)
+...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+. .+|.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455566677889999999999999999874322 235778889999999999999999998763 432 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHhHHhc
Q 006076 361 SLISSYGV------------------HGYGGKAIQIFKEMIYHGVSPSPI-SFVSVLGACSHAGLVEEGKMLFESMRKEH 421 (662)
Q Consensus 361 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 421 (662)
.+..+|.. .|+.++|+..|+++.+. .|+.. ..... .....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~--------------~~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDAT--------------KRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHH--------------HHHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHH--------------HHHHHHHHH-
Confidence 55555554 57899999999999884 56543 22111 111111100
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 006076 422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494 (662)
Q Consensus 422 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (662)
.......+...|.+.|++++|...|+++ ...|+ ...+..+..++...|+.++|...++++....|++..
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0112245678889999999999999987 23343 246888899999999999999999999998888654
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=5.1e-07 Score=76.23 Aligned_cols=109 Identities=11% Similarity=0.018 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHH
Q 006076 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSC 469 (662)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 469 (662)
..+......+.+.|++++|.+.|+...+.. +.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 345555666666677777777776665432 335666666777777777777777776665 2233 456677777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADV 502 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (662)
...|++++|...++++++++|++..++..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777777777777777777777776666655543
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.58 E-value=1.4e-05 Score=78.18 Aligned_cols=149 Identities=16% Similarity=0.161 Sum_probs=76.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHH--HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC-----
Q 006076 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE--EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK----- 442 (662)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 442 (662)
+++++++++++++.+.. +-|...|..-.-.+.+.|.++ +++++++.+.+.. +-|...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhh
Confidence 44555555555555431 123344444444444444444 5555555555432 2244444444444444444
Q ss_pred -HHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCChHHHHHH
Q 006076 443 -LEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNV-ELAERASKRLFELE---PTNAGNYVLLADVYAAADMWDEVKRV 515 (662)
Q Consensus 443 -~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (662)
++++++.++++ ... -|...|+-+...+...|+. +....+.+++.+++ |.++.++..++++|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55566655544 222 2555666665555555553 22444555555544 55556666666666666666666666
Q ss_pred HHHHHh
Q 006076 516 KRLLEA 521 (662)
Q Consensus 516 ~~~m~~ 521 (662)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
No 114
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.57 E-value=6.5e-07 Score=83.14 Aligned_cols=156 Identities=10% Similarity=0.058 Sum_probs=113.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHH----------------HHHHHhcCCCHHHHHHHHHHhHHhcCCC
Q 006076 362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVS----------------VLGACSHAGLVEEGKMLFESMRKEHMIR 424 (662)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 424 (662)
....+...|++++|+..|++..+. .|+. ..+.. +..++...|++++|...|+...+.. +
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--P 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--C
Confidence 344556667777777777776663 4433 33444 7788999999999999999998653 4
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076 425 PSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCN--VELAERASKRLFELEPTNAGNYVLLA 500 (662)
Q Consensus 425 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (662)
.+...+..+...|...|++++|...|++. ...| +...|..+...+...|+ .+.+...++++....|. ...+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence 47889999999999999999999999987 3445 67788888888766553 34455566665543332 23455678
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 006076 501 DVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
..+...|++++|...+++..+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888899999999999988753
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=1.7e-06 Score=80.38 Aligned_cols=125 Identities=11% Similarity=-0.030 Sum_probs=97.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHh
Q 006076 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRI 471 (662)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~ 471 (662)
+..+...+...|++++|...|+.. ++|+...+..+...|.+.|++++|.+.+++. .. +.+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334455566677777777777655 2456777777777788888888888777765 22 3366778888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 472 HCNVELAERASKRLFELEPTNA----------------GNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
.|++++|...++++++..|.+. ..+..++.+|.+.|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998888766 789999999999999999999999988643
No 116
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=1.7e-06 Score=72.08 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=82.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHH
Q 006076 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-R-IEPGPKVWGSLLGSC 469 (662)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~ 469 (662)
.++..+...+...|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|..+++++ . .+.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 455556666666777777777777665432 335666777777777777777777777766 2 234667788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD 507 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (662)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999888888888888887776544
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.55 E-value=7.4e-06 Score=80.52 Aligned_cols=160 Identities=8% Similarity=-0.035 Sum_probs=114.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCCCHh----HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC----hHHHHH
Q 006076 362 LISSYGVHGYGGKAIQIFKEMIYHG-VSPSPI----SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS----VEHYAC 432 (662)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 432 (662)
.+..+...|++++|.+++++..... ..|+.. .+..+...+...|++++|...|+...+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4566777888888888888877632 122211 2234555666777888888888888753211222 336888
Q ss_pred HHHHHhhcCCHHHHHHHHHhcC-----C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 006076 433 MVDLLGRANKLEEAAKIIEDLR-----I---EPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTN------AGNYV 497 (662)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~-----~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 497 (662)
+...|...|++++|...++++- . .|. ..+|..+...|...|++++|...+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888888888888887651 1 111 2467888899999999999999999998764322 56888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHh
Q 006076 498 LLADVYAAADM-WDEVKRVKRLLEA 521 (662)
Q Consensus 498 ~l~~~~~~~g~-~~~A~~~~~~m~~ 521 (662)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999998887653
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=3.1e-06 Score=78.58 Aligned_cols=145 Identities=7% Similarity=-0.099 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCH
Q 006076 328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407 (662)
Q Consensus 328 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 407 (662)
+..+...|...|++++|...|++...++...|..+...|...|++++|++.|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34455556666666666666666655556666666666666666666666666655532 22334455555555555555
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006076 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP-GPKVWGSLLGSCRIHCNVELAERASKRLF 486 (662)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (662)
++|.+.|+...+.. |+.... .+...| +...| ....|..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~---~~~~~~-----~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQL---RGNQLI-----DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTT---TTCSEE-----ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCccHH-----HHHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555554321 110000 000000 01222 23677888888899999999999999999
Q ss_pred hcCCCC
Q 006076 487 ELEPTN 492 (662)
Q Consensus 487 ~~~p~~ 492 (662)
++.|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 998875
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=1.8e-06 Score=76.35 Aligned_cols=127 Identities=8% Similarity=-0.045 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHH
Q 006076 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCR 470 (662)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~ 470 (662)
.+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++. .. +.+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44555556666777777777777766432 335667777777788888888888877765 22 335677888888899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHH--HHHHHHhcCChHHHHHHHHHHHh
Q 006076 471 IHCNVELAERASKRLFELEPTNAGNYVL--LADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
..|++++|...++++++..|.+...+.. ++..+.+.|++++|.+.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988777744 44447888999999999887643
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.54 E-value=3.8e-06 Score=82.30 Aligned_cols=161 Identities=7% Similarity=-0.037 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHH-HHHHH
Q 006076 290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RDVVSWNS-LISSY 366 (662)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~ 366 (662)
...+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|++++|...|+++.. |+...+.. ....+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3344455555666777777777777776654 23456677777777777888888887777763 44332222 22235
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 006076 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446 (662)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 446 (662)
.+.++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 55666667777777766642 22345666666677777777777777777765421111245666666666666666666
Q ss_pred HHHHHh
Q 006076 447 AKIIED 452 (662)
Q Consensus 447 ~~~~~~ 452 (662)
...+++
T Consensus 275 ~~~~r~ 280 (287)
T 3qou_A 275 ASXYRR 280 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.53 E-value=1.1e-06 Score=75.91 Aligned_cols=96 Identities=14% Similarity=-0.021 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (662)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4556667778888999999999999876 2334 7788888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 006076 504 AAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~ 521 (662)
...|++++|.+.+++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998775
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.51 E-value=1.1e-06 Score=74.11 Aligned_cols=100 Identities=11% Similarity=0.114 Sum_probs=89.7
Q ss_pred CCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076 423 IRPS-VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499 (662)
Q Consensus 423 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (662)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4453 456788899999999999999999987 3344 788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 006076 500 ADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988763
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.51 E-value=5.7e-06 Score=76.94 Aligned_cols=173 Identities=10% Similarity=-0.101 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-CChhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 006076 309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK-RDVVSWNSLISSYGVHG----YGGKAIQIFKEMI 383 (662)
Q Consensus 309 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 383 (662)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++..+ .+..++..|...|.. + +.++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555555543 566677777777777788888877776653 456677777777776 5 7888888888887
Q ss_pred HcCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhh----cCCHHHHHHHHHh
Q 006076 384 YHGVSPSPISFVSVLGACSH----AGLVEEGKMLFESMRKEHMIRPS---VEHYACMVDLLGR----ANKLEEAAKIIED 452 (662)
Q Consensus 384 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 452 (662)
+.| +...+..|...+.. .+++++|.++|+...+. .|+ +..+..|..+|.. .+++++|...|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 755 55667777777776 78889999988888642 332 6788888888887 7789999999888
Q ss_pred c-CCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCCC
Q 006076 453 L-RIEPGPKVWGSLLGSCRIH-C-----NVELAERASKRLFELEPT 491 (662)
Q Consensus 453 m-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p~ 491 (662)
. ...++...+..|...|... | +.++|...+++..+.++.
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 7 3235666777777777653 3 889999999998887643
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.50 E-value=3.4e-06 Score=83.01 Aligned_cols=163 Identities=6% Similarity=-0.049 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcC--CCCC--hH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-----ISFVSVLGACSHAGLVEEGKMLFESMRKEHM--IRPS--VE 428 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~~--~~ 428 (662)
.+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...++...+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455667778888888888888877764322111 1233445566778899999998888764221 1111 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cc
Q 006076 429 HYACMVDLLGRANKLEEAAKIIEDLR----IEPG-----PKVWGSLLGSCRIHCNVELAERASKRLFELEPT------NA 493 (662)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 493 (662)
+++.+...|...|++++|...+++.- ..|+ ..+|..+...|...|++++|...+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999998887651 1222 257888999999999999999999998875422 14
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHHH
Q 006076 494 GNYVLLADVYAAADMWDEV-KRVKRLLE 520 (662)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 520 (662)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788999999999999999 77677654
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=2.1e-06 Score=72.24 Aligned_cols=116 Identities=11% Similarity=-0.021 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHH
Q 006076 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSC 469 (662)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~ 469 (662)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++. ... .+...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 445555666666777777777777665432 335666777777777777888877777765 223 3567788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (662)
...|++++|...++++++..|+++..+..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8899999999999999999998888888888888887765
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.47 E-value=1.9e-06 Score=72.83 Aligned_cols=115 Identities=10% Similarity=0.012 Sum_probs=78.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHH
Q 006076 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSC 469 (662)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~ 469 (662)
..+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++. .. +.+...|..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 445555555666666666666666654321 234556666666677777777777766655 22 23567777888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM 508 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (662)
...|++++|...++++++..|.+...+..++.++.+.|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888876653
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.46 E-value=4.5e-07 Score=88.71 Aligned_cols=190 Identities=10% Similarity=-0.025 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHH
Q 006076 325 LPVVSALVTMYARCGKLELGQCVFDHMD--KR-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGA 400 (662)
Q Consensus 325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 400 (662)
...+..+...|.+.|++++|...|++.. .| +...|..+...|...|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3445555666666666666666666554 23 5566667777777777777777777776653 34 34566666667
Q ss_pred HhcCCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006076 401 CSHAGLVEEGKMLFESMRKEHMIRPSV-EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479 (662)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~ 479 (662)
+...|++++|...|+...+. .|+. ..+...+....+......... .......++......+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 77777777777777766542 1211 011111111111111111111 2222333444444333 222 268889999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 006076 480 RASKRLFELEPTNAGNYVLLADVYAAA-DMWDEVKRVKRLLEAR 522 (662)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 522 (662)
..++++++++|++......+...+.+. +++++|.++|.+..+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998777777777777776 7899999999887653
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.45 E-value=4e-05 Score=75.16 Aligned_cols=158 Identities=12% Similarity=-0.049 Sum_probs=119.9
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhHHHH
Q 006076 331 LVTMYARCGKLELGQCVFDHMDK-----RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PS----PISFVS 396 (662)
Q Consensus 331 li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 396 (662)
.+..+...|++++|..++++..+ ++ ...+..+...|...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778889999999999988653 22 113344666777788999999999999884322 22 226888
Q ss_pred HHHHHhcCCCHHHHHHHHHHhHHhc----CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-------CCCCC-HHHHH
Q 006076 397 VLGACSHAGLVEEGKMLFESMRKEH----MIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-------RIEPG-PKVWG 463 (662)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~ 463 (662)
+..++...|++++|..+|+.+.+.. +..+ ...++..+...|.+.|++++|...+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999987421 1122 2347889999999999999999998866 11222 57888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhc
Q 006076 464 SLLGSCRIHCN-VELAERASKRLFEL 488 (662)
Q Consensus 464 ~ll~~~~~~g~-~~~a~~~~~~~~~~ 488 (662)
.+..++...|+ .++|...+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999994 69999999988753
No 129
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.45 E-value=1.2e-06 Score=86.97 Aligned_cols=196 Identities=7% Similarity=-0.047 Sum_probs=149.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006076 302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR-CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK 380 (662)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 380 (662)
..|++++|.++++...+.... . +.+ .+++++|...|.+ ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 357788999999888765321 1 112 5788888888765 3567889999999999999
Q ss_pred HHHHcCC---CC-C-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCC--CC--ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 006076 381 EMIYHGV---SP-S-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMI--RP--SVEHYACMVDLLGRANKLEEAAKIIE 451 (662)
Q Consensus 381 ~m~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (662)
+...... .+ . ..+|..+...|...|++++|...|+...+...- .+ ...++..+...|.+ |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8766311 11 1 357888889999999999999999987653210 11 24678889999998 99999999998
Q ss_pred hc-CCC---CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCChHHHHHHHH
Q 006076 452 DL-RIE---PG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA------GNYVLLADVYAAADMWDEVKRVKR 517 (662)
Q Consensus 452 ~m-~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 517 (662)
+. .+. .+ ..++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76 111 11 45788889999999999999999999998765443 256678888899999999999999
Q ss_pred HHH
Q 006076 518 LLE 520 (662)
Q Consensus 518 ~m~ 520 (662)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 877
No 130
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.43 E-value=0.00018 Score=70.44 Aligned_cols=226 Identities=7% Similarity=-0.046 Sum_probs=161.5
Q ss_pred CChhHHHHHHHHHhhhhCCCcCCHH-HHHHHHHHHHccC--CHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc-
Q 006076 267 GMAFEALELFREMIMESHDLCPNSV-TMVSVLQACAALA--ALEQGKMIHGYILRRGLDSILPVVSALVTMY----ARC- 338 (662)
Q Consensus 267 g~~~~A~~~~~~m~~~~~~~~p~~~-t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~- 338 (662)
...++|++++..++ . +.|+.. .++.--.++...+ +++++..+++.++....+ +..+++.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L--~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 47 EYSERALHITELGI--N--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CCSHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHH--H--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 33457777777662 2 235433 3444445555666 777777777777776533 334444333333 444
Q ss_pred --CChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCC-----
Q 006076 339 --GKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGG--KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL----- 406 (662)
Q Consensus 339 --g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~----- 406 (662)
++++++..+++.+. .+|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.-.....+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 78889998888876 367788888888888888888 9999999999864 2355677666666677776
Q ss_pred -HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH-HHHHHHhc-CC----CCCHHHHHHHHHHHHhcCCHHHHH
Q 006076 407 -VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE-AAKIIEDL-RI----EPGPKVWGSLLGSCRIHCNVELAE 479 (662)
Q Consensus 407 -~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~ 479 (662)
++++++.++.+.... +-|...|+.+...+.+.|+..+ +.++..+. .. ..+...+..+...+.+.|+.++|.
T Consensus 201 ~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 889999999888653 5578899999999999888544 55566665 21 347788999999999999999999
Q ss_pred HHHHHHHh-cCCCCcchHHHHH
Q 006076 480 RASKRLFE-LEPTNAGNYVLLA 500 (662)
Q Consensus 480 ~~~~~~~~-~~p~~~~~~~~l~ 500 (662)
++++.+.+ .+|.....+...+
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHH
Confidence 99999996 7998766555443
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.41 E-value=1.7e-06 Score=86.89 Aligned_cols=160 Identities=13% Similarity=0.025 Sum_probs=114.7
Q ss_pred CChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 006076 339 GKLELGQCVFDHMDK--R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415 (662)
Q Consensus 339 g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 415 (662)
+++++|...|+...+ | +...|..+...|.+.|++++|+..|++.... .|+...+ ..+.+.++-
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~- 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ- 192 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-
Confidence 344445444443332 2 4457777777888888888888888877774 3332110 001111100
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493 (662)
Q Consensus 416 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (662)
+.....|..+...|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|++.
T Consensus 193 --------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 193 --------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred --------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 012467888888999999999999998877 3334 678899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHHH
Q 006076 494 GNYVLLADVYAAADMWDEV-KRVKRLLE 520 (662)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 520 (662)
.++..++.++.+.|++++| ...++.|.
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 44666554
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.40 E-value=1.7e-06 Score=77.86 Aligned_cols=118 Identities=8% Similarity=0.054 Sum_probs=75.7
Q ss_pred cCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHH-HHhcCCH--HH
Q 006076 403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGS-CRIHCNV--EL 477 (662)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~-~~~~g~~--~~ 477 (662)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++. ... .+...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455666666666655432 335566666666677777777777666655 222 245566666666 6667776 77
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
|...++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777776654
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=3e-06 Score=71.28 Aligned_cols=95 Identities=11% Similarity=0.057 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006076 427 VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504 (662)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (662)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888776 2233 67788888888888899999999999999999988888888999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 006076 505 AADMWDEVKRVKRLLEA 521 (662)
Q Consensus 505 ~~g~~~~A~~~~~~m~~ 521 (662)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 99999999988887765
No 134
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.35 E-value=0.00034 Score=73.92 Aligned_cols=342 Identities=9% Similarity=-0.038 Sum_probs=152.4
Q ss_pred CCchHHHHHHh--cCCCCCHhhHHHHHHHHhcCCC-hHHHHHHHHHHHHh-CCCC-ChhHHHHHHHHhhc----CCChHH
Q 006076 63 GNLRQALDVLS--IEPNPTQHTYELLLLSCTHHNS-LSDALNVHSHLTDN-GFDQ-DPFLVTKLINVYSH----FDSVDD 133 (662)
Q Consensus 63 g~~~~A~~~~~--~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-g~~~-~~~~~~~li~~y~~----~g~~~~ 133 (662)
|+++.+..+|+ -...|+...|..-+.-..+.++ .+....+|+..+.. |..+ +..+|...+..+.. .++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 66777777777 2233676666666655554442 34455666666554 4322 45666666666542 345666
Q ss_pred HHHHHhcCCC-C--Cc-chHHHHHHHHH-------------hcCCccHHHHHHHHHhhCCCCCCC-ChhhHHHHHHHHHh
Q 006076 134 ARHVFDKTRR-R--TI-YVWNALFRALT-------------LAGRGEEVLELYRRMNGTGTGIRS-DRFTYTYVLKACVA 195 (662)
Q Consensus 134 A~~~f~~~~~-~--~~-~~~~~li~~~~-------------~~g~~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~~~~~ 195 (662)
++++|++... | +. ..|......-. ..+.+..|..+++.+... .+. +...+...+.--..
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~---~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL---IRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHhc
Confidence 7777765432 1 11 11221111000 001122233333333221 000 11122222221111
Q ss_pred CCCCc---cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC-C-CHhHHHHHHHHHHHcCChh
Q 006076 196 SSCGF---SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-K-NVVSWSAMIACYARNGMAF 270 (662)
Q Consensus 196 ~~~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~-~~~~~~~li~~~~~~g~~~ 270 (662)
.+... +..+.+..+++.++... +.+..+|...+..+.+.|+++.|..+|++... | +...|. .|+.....+
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~ 259 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEE 259 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchh
Confidence 10000 00233455666666543 44456666666666666777777776665421 2 111221 222221112
Q ss_pred HHHHHHHHHhhhhC----CCcC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-ChH
Q 006076 271 EALELFREMIMESH----DLCP---NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG-KLE 342 (662)
Q Consensus 271 ~A~~~~~~m~~~~~----~~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~ 342 (662)
+..+-+.+...... +..+ ....|...+....+.+.++.|+.+++.+ +.. ..+..+|.....+-..++ +.+
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 260 AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChH
Confidence 22111111100000 0001 1233444444444556677777777666 211 123333333222222333 466
Q ss_pred HHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHH
Q 006076 343 LGQCVFDHMDK--R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419 (662)
Q Consensus 343 ~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 419 (662)
.|.++|+...+ | +...|...+.-....|+.+.|..+|+++. .....|...+.--...|+.+.+..+++...+
T Consensus 338 ~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 338 TPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777765532 2 23345555555556667777777776651 1234455555544555777777766666653
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.32 E-value=2.4e-05 Score=76.86 Aligned_cols=162 Identities=13% Similarity=-0.035 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC--C-C------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--Hh
Q 006076 327 VVSALVTMYARCGKLELGQCVFDHMDK--R-D------VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV---SPS--PI 392 (662)
Q Consensus 327 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 392 (662)
.+...+..|...|++++|.+.+....+ + . ...+..+...|...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456677888888888888765431 1 1 12344456667788899999999988876321 112 34
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhc-CC------CC-CH
Q 006076 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-----VEHYACMVDLLGRANKLEEAAKIIEDL-RI------EP-GP 459 (662)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~------~p-~~ 459 (662)
+++.+...|...|++++|..+|+...+.....|+ ..++..+...|.+.|++++|...+++. .+ .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999999999888632111222 257888899999999999999998875 11 11 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 006076 460 KVWGSLLGSCRIHCNVELA-ERASKRLFEL 488 (662)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 488 (662)
.+|..+...+...|+.++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888899999999999 7778877653
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.32 E-value=2.2e-06 Score=74.62 Aligned_cols=103 Identities=10% Similarity=-0.049 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHH
Q 006076 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSC 469 (662)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 469 (662)
..+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 455566667778888888888888876542 346777788888888888888888888876 2333 567788888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchH
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNY 496 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (662)
...|++++|...+++++++.|+++...
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999999999999999999988876553
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.32 E-value=6.6e-06 Score=71.62 Aligned_cols=104 Identities=9% Similarity=-0.042 Sum_probs=86.2
Q ss_pred CCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHH
Q 006076 387 VSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWG 463 (662)
Q Consensus 387 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 463 (662)
+.|+. ..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|++.|++. .+.| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34543 466677778889999999999999998643 346888999999999999999999999887 3344 577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 464 SLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
.+..++...|++++|...+++++++.|++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999874
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.31 E-value=2.8e-06 Score=81.28 Aligned_cols=135 Identities=10% Similarity=-0.077 Sum_probs=91.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHH
Q 006076 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS--VEHYACMVDLL 437 (662)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~ 437 (662)
-.....+...|++++|.++|..+... .|+....-.+...+.+.+++++|+..|+...+ .. .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHH
Confidence 34556677778888888888777653 35444444444567778888888888875532 10 111 23567778888
Q ss_pred hhcCCHHHHHHHHHhcC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076 438 GRANKLEEAAKIIEDLR---IEPG--PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL 499 (662)
Q Consensus 438 ~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (662)
.+.|++++|+..|++.. ..|. ...+.....++...|+.++|...|+++...+|+ ..+...|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 88888888888888772 2143 235666777788888888888888888888887 5555444
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.31 E-value=4e-06 Score=68.29 Aligned_cols=98 Identities=14% Similarity=0.015 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHH
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT--NAGNYVLLAD 501 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 501 (662)
+...+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3445666777777778888887777765 22 335677788888888888888888888888888888 8888888888
Q ss_pred HHHhc-CChHHHHHHHHHHHhCC
Q 006076 502 VYAAA-DMWDEVKRVKRLLEARG 523 (662)
Q Consensus 502 ~~~~~-g~~~~A~~~~~~m~~~~ 523 (662)
+|.+. |++++|.+.++.....+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888 89999988888887654
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.31 E-value=8.8e-06 Score=73.05 Aligned_cols=127 Identities=9% Similarity=0.094 Sum_probs=97.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HhhcCCH--
Q 006076 367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL-LGRANKL-- 443 (662)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 443 (662)
...|++++|+..|++..... +.+...+..+...+...|++++|...|+...+.. +.+...+..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677888888888887742 3355778888888889999999999999887643 3467778888888 7788998
Q ss_pred HHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 006076 444 EEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496 (662)
Q Consensus 444 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (662)
++|...+++. ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998877 3334 577888888999999999999999999999999876544
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=1.3e-05 Score=73.47 Aligned_cols=94 Identities=9% Similarity=-0.054 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhc-C---CCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----
Q 006076 428 EHYACMVDLLGRANKLEEAAKIIEDL-R---IEP-G----PKVWGSLLGSCRIHCNVELAERASKRLFELEP--TN---- 492 (662)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~---- 492 (662)
..+..+...|...|++++|.+.+++. . ..+ + ...+..+...+...|++++|...+++.++..+ .+
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 34455555555555555555555443 0 011 1 23455566666677777777777777665321 11
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 493 AGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
..++..++.+|...|++++|.+.+++..+
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 12356777888888888888887776553
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.29 E-value=7.8e-06 Score=69.63 Aligned_cols=98 Identities=16% Similarity=0.054 Sum_probs=81.6
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006076 425 PSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502 (662)
Q Consensus 425 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (662)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677788888888888888888888776 2233 577888888888899999999999999999999988899999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 006076 503 YAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 503 ~~~~g~~~~A~~~~~~m~~~ 522 (662)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999887653
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.28 E-value=1.6e-05 Score=65.19 Aligned_cols=108 Identities=11% Similarity=0.036 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHH
Q 006076 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCR 470 (662)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 470 (662)
.+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444455555566666666655554321 224555556666666666666666666554 2222 4556666666677
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006076 471 IHCNVELAERASKRLFELEPTNAGNYVLLADV 502 (662)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (662)
..|++++|...++++++.+|+++..+..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777666555555443
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=3.5e-06 Score=70.43 Aligned_cols=94 Identities=19% Similarity=0.034 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 006076 429 HYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA 506 (662)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (662)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|+.++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3456677888899999999998877 3344 6788888889999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 006076 507 DMWDEVKRVKRLLEAR 522 (662)
Q Consensus 507 g~~~~A~~~~~~m~~~ 522 (662)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=1.3e-05 Score=73.46 Aligned_cols=152 Identities=13% Similarity=-0.007 Sum_probs=97.5
Q ss_pred hcCChHHHHH---HHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhcCCCHH
Q 006076 337 RCGKLELGQC---VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH----GVSP-SPISFVSVLGACSHAGLVE 408 (662)
Q Consensus 337 ~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~ 408 (662)
..|++++|.+ ++..-+.....+|+.+...|...|++++|+..|++.... |..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777777 544433334556777777777777777777777776551 1122 2245666667777888888
Q ss_pred HHHHHHHHhHHhcCCCC-----ChHHHHHHHHHHhhcCCHHHHHHHHHhc----CCCCC----HHHHHHHHHHHHhcCCH
Q 006076 409 EGKMLFESMRKEHMIRP-----SVEHYACMVDLLGRANKLEEAAKIIEDL----RIEPG----PKVWGSLLGSCRIHCNV 475 (662)
Q Consensus 409 ~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~ 475 (662)
+|...++...+...-.+ ....+..+...+...|++++|...+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888877654311112 2345777788888888888888887765 11122 23356777788888999
Q ss_pred HHHHHHHHHHHhc
Q 006076 476 ELAERASKRLFEL 488 (662)
Q Consensus 476 ~~a~~~~~~~~~~ 488 (662)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888888764
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=6.3e-06 Score=73.01 Aligned_cols=95 Identities=9% Similarity=0.031 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006076 427 VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504 (662)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (662)
...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555555555555555555554 2222 44555555566666666666666666666666666666666666666
Q ss_pred hcCChHHHHHHHHHHHh
Q 006076 505 AADMWDEVKRVKRLLEA 521 (662)
Q Consensus 505 ~~g~~~~A~~~~~~m~~ 521 (662)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666665544
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.25 E-value=1.1e-05 Score=66.97 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006076 427 VEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA 504 (662)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (662)
...+..+...+.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 22 3467889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 006076 505 AADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 505 ~~g~~~~A~~~~~~m~~~ 522 (662)
..|++++|...++++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=1.1e-05 Score=66.23 Aligned_cols=97 Identities=10% Similarity=0.096 Sum_probs=87.2
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (662)
....+..+...+...|++++|...+++. ... .+...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3567788889999999999999999987 223 47788999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 006076 504 AAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~ 522 (662)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988764
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.23 E-value=1.1e-05 Score=68.14 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=89.6
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 006076 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD 501 (662)
Q Consensus 424 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (662)
+.+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345778899999999999999999999987 4444 77889999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 006076 502 VYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 502 ~~~~~g~~~~A~~~~~~m~~~ 522 (662)
+|.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988763
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.22 E-value=5.9e-06 Score=69.66 Aligned_cols=95 Identities=4% Similarity=-0.035 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hHH
Q 006076 427 VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG-------NYV 497 (662)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~ 497 (662)
...+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345677888888999999999998876 3344 5778889999999999999999999999998876543 677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 006076 498 LLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.++.+|...|++++|.+.+++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788999999999999999988664
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.22 E-value=1.5e-05 Score=76.24 Aligned_cols=181 Identities=9% Similarity=-0.052 Sum_probs=133.5
Q ss_pred hcCChHHHHHHHhhCCC--C-ChhHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCH---------------
Q 006076 337 RCGKLELGQCVFDHMDK--R-DVVSWNSL-------ISSYGVHGYGGKAIQIFKEMIYHGVSPSP--------------- 391 (662)
Q Consensus 337 ~~g~~~~A~~~~~~m~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 391 (662)
..++.+.|.+.|.+..+ | ....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46788888888887763 3 34577777 4555555555566655555443 33322
Q ss_pred -------hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCH----H
Q 006076 392 -------ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP----K 460 (662)
Q Consensus 392 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 460 (662)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223455677889999999999998863 2454436677778999999999999999977434433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 461 VWGSLLGSCRIHCNVELAERASKRLFELE--PT-NAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
.+..+..++...|++++|+..+++..... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67788899999999999999999998533 54 4457788999999999999999999999864
No 152
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.22 E-value=3.1e-05 Score=68.22 Aligned_cols=128 Identities=10% Similarity=-0.043 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 436 (662)
..|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|...++...+.. +.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 456667777777888888888887777642 2345667777777778888888888888776542 3456777788888
Q ss_pred HhhcCCHHHHHHHHHhc-CCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 006076 437 LGRANKLEEAAKIIEDL-RIEP-GPKVWGS--LLGSCRIHCNVELAERASKRLFE 487 (662)
Q Consensus 437 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 487 (662)
|.+.|++++|...+++. ...| +...+.. +...+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888776 2223 4444433 33336667888888887776654
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=1.6e-05 Score=68.53 Aligned_cols=96 Identities=9% Similarity=-0.025 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (662)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3444555555555555555555555554 33444 345555555555666666666666666666665555555666
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 006076 501 DVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.+|...|++++|...+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666655543
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.21 E-value=1.2e-05 Score=69.22 Aligned_cols=105 Identities=10% Similarity=-0.020 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHH
Q 006076 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCR 470 (662)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 470 (662)
.+..+...+...|++++|...|+...+.. +.+...|..+...|.+.|++++|...|++. ...| ++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44455556677777777777777776542 336667777778888888888888888776 2233 5667778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076 471 IHCNVELAERASKRLFELEPTNAGNYVLL 499 (662)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (662)
..|++++|...+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 88999999999999988888776655443
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.21 E-value=1.1e-05 Score=73.91 Aligned_cols=171 Identities=9% Similarity=-0.030 Sum_probs=105.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCH
Q 006076 331 LVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407 (662)
Q Consensus 331 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 407 (662)
.+......|+++.|.+.|+.-.+ .....|..+...+...|++++|+..|++.... .|+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~---------- 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ---------- 77 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH----------
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh----------
Confidence 33444455667777666654332 23456777778888888888888888888773 3332111000
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRL 485 (662)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 485 (662)
....-.. ......+..+..+|.+.|++++|+..+++. ... .+...|..+..++...|++++|...++++
T Consensus 78 -----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 78 -----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp -----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000000 011356777888888889999998888876 223 46778888999999999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcCChHHHH-HHHHHHHhC
Q 006076 486 FELEPTNAGNYVLLADVYAAADMWDEVK-RVKRLLEAR 522 (662)
Q Consensus 486 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 522 (662)
++++|+++.++..+..++...|+.+++. ..++.|-.+
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998888887776 455555443
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.18 E-value=2e-05 Score=66.13 Aligned_cols=109 Identities=8% Similarity=-0.100 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHH
Q 006076 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCR 470 (662)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 470 (662)
.+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|+..+++. .+.| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44455556666666777766666665432 335666777777777777777777777665 2233 4667777777888
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHH
Q 006076 471 IHCNVELAERASKRLFELE------PTNAGNYVLLADVY 503 (662)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 503 (662)
..|++++|...++++++++ |.+......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888877 66655555554443
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=2.8e-05 Score=68.69 Aligned_cols=108 Identities=14% Similarity=0.009 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHH
Q 006076 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGS 468 (662)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 468 (662)
...+..+...+...|++++|...|+...+.. +.+...|..+...|.+.|++++|+..|++. .+.| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456666667777777888877777776542 336777888888888888888888888776 3334 57788899999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLA 500 (662)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (662)
+...|++++|...++++++++|++...+....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999888665443
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=3.9e-05 Score=65.99 Aligned_cols=109 Identities=9% Similarity=-0.056 Sum_probs=69.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHH
Q 006076 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS----VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSL 465 (662)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 465 (662)
..+..+...+...|++++|.+.|+...+ ..|+ ...+..+...|...|++++|...+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444455555555555555555542 2333 455666666666777777777666654 2223 56677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076 466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503 (662)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (662)
..++...|++++|...++++++++|++...+..+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 78888888888888888888888888776666655554
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.15 E-value=1.5e-05 Score=66.80 Aligned_cols=98 Identities=9% Similarity=0.026 Sum_probs=88.0
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006076 425 PSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV 502 (662)
Q Consensus 425 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (662)
.+...+..+...+...|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|+++..+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 35667888899999999999999999987 22 34678899999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 006076 503 YAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 503 ~~~~g~~~~A~~~~~~m~~~ 522 (662)
|...|++++|...+++..+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999988764
No 160
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.11 E-value=2.7e-05 Score=78.15 Aligned_cols=120 Identities=12% Similarity=-0.031 Sum_probs=70.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006076 324 ILPVVSALVTMYARCGKLELGQCVFDHMDK--RD----------------VVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385 (662)
Q Consensus 324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (662)
+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466788899999999999999999997652 33 245666666666666666666666666553
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 006076 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446 (662)
Q Consensus 386 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 446 (662)
. +.+...+..+..++...|++++|...|+...+.. +.+...+..+..++.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233445555555555555555555555554321 12334444444444444444444
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.10 E-value=1.4e-05 Score=69.05 Aligned_cols=92 Identities=10% Similarity=-0.074 Sum_probs=70.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 006076 430 YACMVDLLGRANKLEEAAKIIEDL-RIEPG-------------PKVWGSLLGSCRIHCNVELAERASKRLFEL------- 488 (662)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------- 488 (662)
+......+.+.|++++|+..|++. .+.|+ ...|..+..++...|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344445555566666666666554 12222 237888888888999999999999998888
Q ss_pred CCCCcchH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 489 EPTNAGNY----VLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 489 ~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
+|+++..| ...+.++...|++++|...|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99998888 9999999999999999999998765
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.10 E-value=3.2e-05 Score=65.72 Aligned_cols=100 Identities=10% Similarity=-0.089 Sum_probs=67.9
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHH
Q 006076 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLG 467 (662)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 467 (662)
+...+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 44556666666666777777777776665432 334566777777777777777777777665 2223 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 006076 468 SCRIHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~ 491 (662)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888877766
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.09 E-value=0.00037 Score=69.00 Aligned_cols=224 Identities=15% Similarity=0.083 Sum_probs=113.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHH-HHHHHHHHHHccC-CHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006076 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSV-TMVSVLQACAALA-ALEQGKMIHGYILRRGLDSILPVVSALVT 333 (662)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 333 (662)
++.+-....+.+..++|++++.+++ . +.|+.. .++.--..+...+ .++++..+++.+++... -+..+|+.-..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L--~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~w 131 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIV--R--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH--H--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 3333334444555667888887773 2 234433 3444444444555 46677777766666542 24445555444
Q ss_pred HHHhc-C-ChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 006076 334 MYARC-G-KLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGG--------KAIQIFKEMIYHGVSPSPISFVSVLGA 400 (662)
Q Consensus 334 ~y~~~-g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a 400 (662)
.+.+. + +++++.++++.+.+ +|..+|+.-.-.+.+.|..+ ++++.++++.+..
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-------------- 197 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-------------- 197 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--------------
Confidence 44444 4 56666666666553 34445554444444444333 4455555544432
Q ss_pred HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC-------HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHh
Q 006076 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK-------LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRI 471 (662)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 471 (662)
+-|...|+.....+.+.++ ++++++.++++ ...| |...|+-+-..+..
T Consensus 198 -----------------------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 198 -----------------------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp -----------------------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 2233444444444444433 34444444443 1122 44445444444443
Q ss_pred cCCH--------------------HHHHHHHHHHHhc------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 472 HCNV--------------------ELAERASKRLFEL------EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 472 ~g~~--------------------~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.|+. .........+... ++.++.+...|+++|...|+.++|.++++.+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 255 FSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp TTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3332 1111111112111 134556677899999999999999999999864
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.05 E-value=3.6e-05 Score=62.39 Aligned_cols=98 Identities=17% Similarity=0.060 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC---CHHHHHHHHHH
Q 006076 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP---GPKVWGSLLGS 468 (662)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~ 468 (662)
.+..+...+...|++++|...++...+.. +.+...+..+...|.+.|++++|...+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 33444445555555555555555554321 234455556666666666666666666554 2223 35566666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCC
Q 006076 469 CRIH-CNVELAERASKRLFELEPTN 492 (662)
Q Consensus 469 ~~~~-g~~~~a~~~~~~~~~~~p~~ 492 (662)
+... |+.++|...++++.+..|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCC
Confidence 6677 77777777777777766654
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.03 E-value=5e-05 Score=66.91 Aligned_cols=63 Identities=21% Similarity=0.120 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
...|..+..++...|++++|...++++++++|+++.+|..++.+|...|++++|...+++...
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 457778888888899999999999999999999888999999999999999999998888765
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=1.6e-05 Score=83.90 Aligned_cols=116 Identities=9% Similarity=-0.025 Sum_probs=84.5
Q ss_pred HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 006076 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVEL 477 (662)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 477 (662)
.+.+.|++++|.+.+++..+.. +.+...|..+...|.+.|++++|++.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4456677777777777776532 334677777888888888888888887766 3344 56778888888888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH--HHhcCChHHHHHHHH
Q 006076 478 AERASKRLFELEPTNAGNYVLLADV--YAAADMWDEVKRVKR 517 (662)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 517 (662)
|+..++++++++|++...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888888888887777 778888888888876
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.02 E-value=0.0038 Score=61.75 Aligned_cols=176 Identities=11% Similarity=-0.029 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcC-ChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHH
Q 006076 224 IMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNG-MAFEALELFREMIMESHDLCPNSVTMVSVLQA 299 (662)
Q Consensus 224 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a 299 (662)
+++.+-....+.+..++|.++++.+.. .+...||.--..+...| .++++++++..+ .... +-+...|+.--..
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~--L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEF--AVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH--HHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHH--HHhC-CCcHHHHHHHHHH
Confidence 334444444555566789999998863 36678998888888888 599999999998 4332 2355566665555
Q ss_pred HHcc-C-CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH--------HHHHHHhhCCC---CChhHHHHHHHHH
Q 006076 300 CAAL-A-ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE--------LGQCVFDHMDK---RDVVSWNSLISSY 366 (662)
Q Consensus 300 ~~~~-~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~--------~A~~~~~~m~~---~~~~~~~~li~~~ 366 (662)
+... + +++++..+++.+++.. +.+..+++--.-.+.+.|.++ ++.+.++++.+ .|..+|+.....+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6555 6 7899999999988764 346667766555555555555 78888887763 5778999888888
Q ss_pred HhcCC-------hHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCC
Q 006076 367 GVHGY-------GGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAG 405 (662)
Q Consensus 367 ~~~g~-------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 405 (662)
.+.+. ++++++.++++... .| |...|+.+-..+.+.|
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 77775 56777777777763 34 3445544444444333
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=8.2e-05 Score=78.45 Aligned_cols=114 Identities=12% Similarity=-0.006 Sum_probs=56.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 006076 366 YGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE 444 (662)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 444 (662)
|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 44455566666666555553 23 24455555555666666666666666555321 224455555666666666666
Q ss_pred HHHHHHHhc-CCCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 006076 445 EAAKIIEDL-RIEP-GPKVWGSLLGS--CRIHCNVELAERASK 483 (662)
Q Consensus 445 ~A~~~~~~m-~~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~ 483 (662)
+|.+.+++. ...| +...+..+..+ +...|++++|...++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666554 1122 22233333333 555566666666665
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.01 E-value=6.7e-05 Score=78.74 Aligned_cols=160 Identities=11% Similarity=0.057 Sum_probs=109.9
Q ss_pred CChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 006076 339 GKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE 415 (662)
Q Consensus 339 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 415 (662)
+++++|...|+...+ .....|..+...|.+.|++++|+..|++..+. .|+...+ . -+...
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~---- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK---- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----
Confidence 344445444443322 23456777778888888888888888887763 2322110 0 01110
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076 416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493 (662)
Q Consensus 416 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (662)
... +.....|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|...++++++++|++.
T Consensus 311 ~~~-----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 311 ASE-----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 010 112567888899999999999999999877 3333 678899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHH-HHHHHH
Q 006076 494 GNYVLLADVYAAADMWDEVKR-VKRLLE 520 (662)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 520 (662)
.++..+..++.+.|++++|.+ .++.|.
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875 445444
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.01 E-value=2.8e-05 Score=65.12 Aligned_cols=107 Identities=4% Similarity=-0.051 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC----CCC----HHHHHH
Q 006076 394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI----EPG----PKVWGS 464 (662)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~ 464 (662)
+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3334444444555555555555444321 223444555555555555555555555544 11 112 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076 465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503 (662)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (662)
+...+...|++++|...++++++..| ++.....+..++
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 66677777777777777777777666 344444444443
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.01 E-value=2.7e-05 Score=65.33 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=54.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhc-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHH
Q 006076 433 MVDLLGRANKLEEAAKIIEDL-RIEPG-P---KVWGSLLGSCRIHCNVELAERASKRLFELEPTN---AGNYVLLADVYA 504 (662)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 504 (662)
+...+.+.|++++|...|++. ...|+ . ..|..+..++...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344555566666666666554 11222 2 355556666666677777777777777666666 555666677777
Q ss_pred hcCChHHHHHHHHHHHh
Q 006076 505 AADMWDEVKRVKRLLEA 521 (662)
Q Consensus 505 ~~g~~~~A~~~~~~m~~ 521 (662)
..|++++|...+++...
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777766654
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=4.5e-05 Score=77.45 Aligned_cols=137 Identities=10% Similarity=-0.016 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 436 (662)
..|..+...|.+.|++++|++.|++..+. .|+.. .... .+...+. -+.+...|..+...
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~~--~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAKL--QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGGG--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHHH--HHHHHHHHHHHHHH
Confidence 45777777788888888888888777652 11100 0001 1111111 12246788899999
Q ss_pred HhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHH
Q 006076 437 LGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514 (662)
Q Consensus 437 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 514 (662)
|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++...+..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4555 677899999999999999999999999999999999999999999998888887765
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.00 E-value=1.5e-05 Score=73.01 Aligned_cols=146 Identities=10% Similarity=-0.026 Sum_probs=79.0
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCh----------------hH
Q 006076 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDV----------------VS 358 (662)
Q Consensus 298 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~----------------~~ 358 (662)
......+.++.+.+.++...+.. ......+..+...|.+.|++++|...|++..+ .+. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33455667777766665433221 11345677788899999999999999997652 222 45
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 006076 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG 438 (662)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 438 (662)
|..+..+|...|++++|+..+++..... +.+...+..+..++...|++++|...|+...+.. +.+...+..+..++.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHH
Confidence 6666666666666666666666666531 2234455555556666666666666666655321 223445555555555
Q ss_pred hcCCHHHHH
Q 006076 439 RANKLEEAA 447 (662)
Q Consensus 439 ~~g~~~~A~ 447 (662)
..++.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 544444443
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.98 E-value=3.2e-05 Score=64.77 Aligned_cols=95 Identities=8% Similarity=0.041 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHH
Q 006076 427 VEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN-------AGNYV 497 (662)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 497 (662)
...+..+...+...|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456788889999999999999999987 22 3467889999999999999999999999999988766 77889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 006076 498 LLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999998876
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.98 E-value=0.0021 Score=63.25 Aligned_cols=190 Identities=11% Similarity=0.013 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--ChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC-hHHHHHHH
Q 006076 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCG--KLELGQCVFDHMDK---RDVVSWNSLISSYGVHGY-GGKAIQIF 379 (662)
Q Consensus 306 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 379 (662)
++++..+++.++... +-+..+|+.-...+.+.| .++++..+++.+.+ +|..+|+.-.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455555666665543 234555555555555555 36666666666652 455666666666666666 46777777
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHhcC--------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc-----
Q 006076 380 KEMIYHGVSPSPISFVSVLGACSHA--------------GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA----- 440 (662)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 440 (662)
.++.+.. +-|...|+.....+.+. +.++++.+++....... +-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccc
Confidence 7777643 22334444443333322 33566666666665432 33555565554444444
Q ss_pred ------CCHHHHHHHHHhc-CCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076 441 ------NKLEEAAKIIEDL-RIEPGPKVWGSLLGSC-----RIHCNVELAERASKRLFELEPTNAGNYVLLA 500 (662)
Q Consensus 441 ------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (662)
+.++++++.++++ ...||. .|..+-.+. ...+..++....+.++.+++|....-|.-|.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 3456666666655 334543 343221111 1235556666666666677766544444433
No 176
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.97 E-value=4.3e-05 Score=64.29 Aligned_cols=104 Identities=13% Similarity=-0.017 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV-EHYACMVD 435 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~ 435 (662)
+|..+...|.+.|++++|++.|++..+. .|+ ...|..+..++...|++++|++.++...+. .|+. ..+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~-- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH--
Confidence 4555555556666666666666655552 332 344455555555555555555555554431 1110 000000
Q ss_pred HHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076 436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (662)
..+|..+..++...|++++|+..+++.++..|+
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124445555666666666666666666665553
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.97 E-value=4e-05 Score=63.80 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc
Q 006076 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH 472 (662)
Q Consensus 395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 472 (662)
..+...+.+.|++++|...|+...+.. +.+...|..+..++.+.|++++|+..+++. .+.| +...|..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344455666777777777777776532 335666777777777777777777777765 3334 556777777777788
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 006076 473 CNVELAERASKRLFELEPTN 492 (662)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~ 492 (662)
|+.++|...++++++.+|++
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 88888888888888877764
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=7.8e-06 Score=67.71 Aligned_cols=82 Identities=13% Similarity=-0.014 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHhc-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHH
Q 006076 440 ANKLEEAAKIIEDL-RI---EP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR 514 (662)
Q Consensus 440 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 514 (662)
.|++++|+..|++. .. .| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555554 22 13 234555666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 006076 515 VKRLLEA 521 (662)
Q Consensus 515 ~~~~m~~ 521 (662)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.95 E-value=0.00015 Score=60.69 Aligned_cols=99 Identities=14% Similarity=-0.003 Sum_probs=62.0
Q ss_pred HHHHhcCCCHHHHHHHHHHhHHhcCCCCCh---HHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHH
Q 006076 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSV---EHYACMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSC 469 (662)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~ 469 (662)
...+...|++++|...|+.+.+.. +.+. ..+..+...|.+.|++++|...+++. ...|+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 344555666666666666665432 1122 35556666667777777777776665 22232 45566677777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVL 498 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (662)
...|+.++|...++++++..|+++.....
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 88888888888888888888876544433
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=9.1e-05 Score=77.03 Aligned_cols=163 Identities=9% Similarity=-0.128 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHh----HHHHHHHHHhcCCCHHHHHHHHHHhHHhc---CCCC-ChH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPI----SFVSVLGACSHAGLVEEGKMLFESMRKEH---MIRP-SVE 428 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~ 428 (662)
++..+...|...|++++|.+.+.++...- -.++.. ..+.+-..+...|+.+++..++....... +..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667777777788888877777665421 111221 12222233445678888888877664321 1112 245
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhc-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----c
Q 006076 429 HYACMVDLLGRANKLEEAAKIIEDL-----R--IEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELE---PTN----A 493 (662)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~ 493 (662)
++..|...|...|++++|..++++. + -+| ...++..++..|...|++++|...+++++... +++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788888899999999998888765 1 122 24567788888999999999999998887643 221 2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 494 GNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
..+..++..+...|++++|...+....
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 356677888888899999988777654
No 181
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.94 E-value=6.5e-05 Score=73.16 Aligned_cols=106 Identities=10% Similarity=-0.080 Sum_probs=77.3
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHH
Q 006076 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLG 467 (662)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 467 (662)
+...+..+...+...|++++|...|+...+.. +.+...|..+...|.+.|++++|...+++. ...| +...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44566677777888888888888888877542 336777778888888888888888888776 4444 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 006076 468 SCRIHCNVELAERASKRLFELEPTNAGNYV 497 (662)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (662)
++...|++++|...++++++++|+++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 888888888888888888887776544433
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.93 E-value=0.0027 Score=62.46 Aligned_cols=179 Identities=11% Similarity=0.048 Sum_probs=132.1
Q ss_pred hHHHHHHHhhCC---CCChhHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCC-HHHHHHHH
Q 006076 341 LELGQCVFDHMD---KRDVVSWNSLISSYGVHG--YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL-VEEGKMLF 414 (662)
Q Consensus 341 ~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 414 (662)
++++..+++.+. ..+..+|+.-...+...| .++++++++.++.+.. +-|...|+.-.-.+.+.|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777665 357788998888888888 4899999999999853 3356677776667777887 69999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhc--------------CCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc------
Q 006076 415 ESMRKEHMIRPSVEHYACMVDLLGRA--------------NKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH------ 472 (662)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------ 472 (662)
+.+.+.. +.|...|+.....+.+. +.++++++.+.+. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9998754 45777888777776665 5688899998876 3344 778887665555544
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHH---HhcCChHHHHHHHHHHHhC
Q 006076 473 -----CNVELAERASKRLFELEPTNAGNYVLLADVY---AAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 473 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~ 522 (662)
+.+++++..++++++++|++.-++..++... ...|..++....+.++.+-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578999999999999999855554443322 2467778888888888763
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.91 E-value=9.8e-05 Score=64.29 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhc----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCcc
Q 006076 429 HYACMVDLLGRANKLEEAAKIIEDL----RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEP------TNAG 494 (662)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 494 (662)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555555555555555443 00111 33455666667777777777777777765421 1234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 495 NYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677788888888888888888877653
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=5.1e-05 Score=76.11 Aligned_cols=147 Identities=10% Similarity=-0.035 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436 (662)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 436 (662)
..|..+...|.+.|++++|+..|++... +.|+... +...|+.+++...+ ....|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHHH
Confidence 3566677777888888888888888776 3454432 22333333333221 12367778888
Q ss_pred HhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HhcCChHHHH
Q 006076 437 LGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY-AAADMWDEVK 513 (662)
Q Consensus 437 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 513 (662)
|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++.++..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776 3334 6677888888888888888888888888888888888888877774 3456777778
Q ss_pred HHHHHHHhCC
Q 006076 514 RVKRLLEARG 523 (662)
Q Consensus 514 ~~~~~m~~~~ 523 (662)
+++++|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888776543
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.86 E-value=5.7e-05 Score=66.55 Aligned_cols=76 Identities=18% Similarity=0.091 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-chHHHHHH
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA-GNYVLLAD 501 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~ 501 (662)
+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....|..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4567888899999999999999998876 3344 678899999999999999999999999999999876 33434433
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.81 E-value=4.2e-05 Score=66.02 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhc-C-------CCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 006076 429 HYACMVDLLGRANKLEEAAKIIEDL-R-------IEPG-PKVW----GSLLGSCRIHCNVELAERASKRLFELEPTNAGN 495 (662)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m-~-------~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (662)
.|..+..++.+.|++++|+..+++. . +.|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6666666777777777766666554 2 3775 4678 899999999999999999999999999988665
Q ss_pred HH
Q 006076 496 YV 497 (662)
Q Consensus 496 ~~ 497 (662)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.81 E-value=0.00012 Score=63.61 Aligned_cols=132 Identities=11% Similarity=0.006 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC----ChH
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PS----PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP----SVE 428 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~ 428 (662)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+...-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555544432100 11 12444555555566666666666655543210001 134
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076 429 HYACMVDLLGRANKLEEAAKIIEDLR----IEP----GPKVWGSLLGSCRIHCNVELAERASKRLFELE 489 (662)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (662)
.+..+...+...|++++|.+.+++.- ..+ ...++..+...+...|+.++|...+++.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55666666677777777776666540 011 13456667777778888888888888776643
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.81 E-value=4.8e-05 Score=76.32 Aligned_cols=113 Identities=10% Similarity=-0.078 Sum_probs=88.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006076 393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472 (662)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 472 (662)
.+..+...+.+.|++++|...|+...+. .|+.. .+...|+.+++...+. ...|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 4556667788889999999999887653 34432 1334455555544332 23788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987654
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00028 Score=73.23 Aligned_cols=118 Identities=10% Similarity=-0.041 Sum_probs=75.7
Q ss_pred HhcCChHHHHHHHhhCCC--------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CCC-HhHHHHHHHHH
Q 006076 336 ARCGKLELGQCVFDHMDK--------R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYH--GV--SPS-PISFVSVLGAC 401 (662)
Q Consensus 336 ~~~g~~~~A~~~~~~m~~--------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~a~ 401 (662)
...|+.+.|..++..... + -..++..+...|...|++++|..++++.... +. +|. ..++..+...|
T Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (434)
T 4b4t_Q 106 QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY 185 (434)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 344555555555544321 1 1235667777888888888888888776653 11 111 24677777888
Q ss_pred hcCCCHHHHHHHHHHhHHhcC-CC-C-C--hHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 402 SHAGLVEEGKMLFESMRKEHM-IR-P-S--VEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~-~~-~-~--~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
...|++++|..+++....... +. | . ...+..+...+...|++++|...|.+.
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888999998888887654321 11 1 1 345677778888889999988777654
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.75 E-value=0.0014 Score=70.45 Aligned_cols=168 Identities=8% Similarity=-0.062 Sum_probs=131.0
Q ss_pred hHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCC--
Q 006076 341 LELGQCVFDHMDK---RDVVSWNSLISSYGVHGY----------GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG-- 405 (662)
Q Consensus 341 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 405 (662)
-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-.-++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3566777776653 345577776666666666 889999999998853 224567777777778888
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc----------
Q 006076 406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN-KLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH---------- 472 (662)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---------- 472 (662)
+++++.+.++.+.+.. +-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6799999999998653 446778888888888888 899999998888 4444 778888877776653
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHH
Q 006076 473 ----CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511 (662)
Q Consensus 473 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (662)
+.++++.+.+++++..+|++..+|..+..++.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999888655
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.73 E-value=7.4e-05 Score=78.39 Aligned_cols=123 Identities=9% Similarity=0.025 Sum_probs=91.4
Q ss_pred HhcCCCHHHHHHHHHHhHHhcC--CCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhc---------CCCCC-HHHHHH
Q 006076 401 CSHAGLVEEGKMLFESMRKEHM--IRP----SVEHYACMVDLLGRANKLEEAAKIIEDL---------RIEPG-PKVWGS 464 (662)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ 464 (662)
+...|++++|..+++...+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777766654321 112 2456788888888888888888877765 23444 356888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 465 LLGSCRIHCNVELAERASKRLFE-----LEPTNAG---NYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
|...|...|++++|+.+++++++ ++|+.+. ....|..++...|++++|+.++++++++-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875 4676554 45578888999999999999999998754
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.72 E-value=4.2e-05 Score=63.18 Aligned_cols=92 Identities=9% Similarity=0.003 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006076 404 AGLVEEGKMLFESMRKEHM-IRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAER 480 (662)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 480 (662)
.|++++|...|+...+... -+.+...+..+...|.+.|++++|...|++. ...| +...+..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4566666666666653100 0223556677777777777777777777766 2233 56677777778888888888888
Q ss_pred HHHHHHhcCCCCcch
Q 006076 481 ASKRLFELEPTNAGN 495 (662)
Q Consensus 481 ~~~~~~~~~p~~~~~ 495 (662)
.++++++..|+++..
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 888888888876543
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=8.2e-05 Score=60.34 Aligned_cols=92 Identities=12% Similarity=-0.036 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN------AGNYV 497 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 497 (662)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888899999999888876 2233 67888889999999999999999999999999988 66777
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 006076 498 LLADVYAAADMWDEVKRVKR 517 (662)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~ 517 (662)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 78888877777766655443
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.68 E-value=0.00019 Score=57.17 Aligned_cols=65 Identities=22% Similarity=0.158 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
.+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36778889999999999999999999999999999999999999999999999999999998764
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.67 E-value=0.0002 Score=55.46 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY 503 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (662)
+...+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|...++++++.+|+++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3556777788888888888888888776 223 36677888888999999999999999999999999888888888888
Q ss_pred HhcC
Q 006076 504 AAAD 507 (662)
Q Consensus 504 ~~~g 507 (662)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.59 E-value=0.00041 Score=70.37 Aligned_cols=113 Identities=9% Similarity=0.024 Sum_probs=82.9
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Q 006076 391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP-GPKVWGSLLGSC 469 (662)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~ 469 (662)
...+..+...+.+.|++++|.+.|+...+.. +... .....+++. ...| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777665321 1100 000111111 1223 457788899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988763
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.56 E-value=0.00023 Score=58.25 Aligned_cols=77 Identities=10% Similarity=0.029 Sum_probs=62.7
Q ss_pred HHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 445 EAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 445 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
+|++.|++. ...| +...|..+...+...|++++|...++++++.+|+++..|..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555554 3344 5777888888888999999999999999999999888899999999999999999999988765
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.55 E-value=0.00067 Score=71.05 Aligned_cols=94 Identities=16% Similarity=0.059 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006076 324 ILPVVSALVTMYARCGKLELGQCVFDHMDK--RD----------------VVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385 (662)
Q Consensus 324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (662)
....+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355778889999999999999999997753 22 244555555555555555555555555442
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhH
Q 006076 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418 (662)
Q Consensus 386 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 418 (662)
. +.+...+..+..++...|++++|...|+...
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1 1123344444444444444444444444443
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.49 E-value=7.8e-05 Score=64.21 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=63.0
Q ss_pred hcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 006076 439 RANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCN----------VELAERASKRLFELEPTNAGNYVLLADVYAAA 506 (662)
Q Consensus 439 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (662)
+.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344555566555544 2223 45555555555555544 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHhCC
Q 006076 507 D-----------MWDEVKRVKRLLEARG 523 (662)
Q Consensus 507 g-----------~~~~A~~~~~~m~~~~ 523 (662)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988743
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.32 E-value=0.0013 Score=51.42 Aligned_cols=69 Identities=13% Similarity=0.018 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 456 EPGPKVWGSLLGSCRIHCN---VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 456 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
++|+..|..+..++...++ .++|..+++++++++|+++.+...++..+.+.|++++|...++++.+.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4577788888888765555 79999999999999999999999999999999999999999999987653
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.26 E-value=0.00063 Score=71.29 Aligned_cols=115 Identities=15% Similarity=0.038 Sum_probs=86.3
Q ss_pred HHHhhcCCHHHHHHHHHhc---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---chH
Q 006076 435 DLLGRANKLEEAAKIIEDL---------RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFE-----LEPTNA---GNY 496 (662)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~ 496 (662)
..+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+.+ .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466789999999998765 12333 35789999999999999999999999875 355544 568
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHH
Q 006076 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK 567 (662)
Q Consensus 497 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 567 (662)
..|+.+|...|++++|..++++..+--. ..-...||...++...+.+...+++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL------------------VTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998764110 1123579988877766666555544
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00089 Score=53.96 Aligned_cols=66 Identities=11% Similarity=-0.092 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
++...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356678889999999999999999999999999999999999999999999999999999998864
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.21 E-value=0.00037 Score=60.01 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC----------HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc--
Q 006076 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK----------LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH-- 472 (662)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-- 472 (662)
+++|.+.++...+.. +.+...|..+..++...|+ +++|+..|++. .+.| +...|..+..+|...
T Consensus 18 feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 18 FEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 444444444444321 2234444444444444433 34666666655 3344 445666666666655
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCCc
Q 006076 473 ---------CNVELAERASKRLFELEPTNA 493 (662)
Q Consensus 473 ---------g~~~~a~~~~~~~~~~~p~~~ 493 (662)
|++++|...|+++++++|++.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 589999999999999999874
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.17 E-value=0.0014 Score=67.68 Aligned_cols=116 Identities=17% Similarity=0.136 Sum_probs=84.4
Q ss_pred HHHHhhcCCHHHHHHHHHhc-C-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---cch
Q 006076 434 VDLLGRANKLEEAAKIIEDL-R-----IEPG----PKVWGSLLGSCRIHCNVELAERASKRLFE-----LEPTN---AGN 495 (662)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m-~-----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~ 495 (662)
+.-+.+.|++++|++++++. . +.|+ ..+++.|..+|...|++++|+.+++++++ +.|+. ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677888888777655 1 2222 35688888899999999999999998875 34444 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHH
Q 006076 496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK 567 (662)
Q Consensus 496 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 567 (662)
+..|+.+|...|++++|..++++..+--. ..-...||...++...+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999998764100 1223579999988888877777765
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.14 E-value=0.006 Score=51.70 Aligned_cols=114 Identities=10% Similarity=-0.059 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 006076 371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII 450 (662)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 450 (662)
+.++|++.|++..+.| .|+.. +...|...+.+++|.++|+...+. -++..+..|..+|..-.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~--------- 71 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGK--------- 71 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCS---------
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCC---------
Confidence 4556666666665554 22222 334444445555555555555431 23444444444444400
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 006076 451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA----ADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 451 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 523 (662)
...++.++|...+++..+.+ ++.++..|+.+|.. .+++++|.+.+++..+.|
T Consensus 72 -------------------g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 72 -------------------YVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp -------------------SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred -------------------CCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 00344555555555554442 34455555555555 555555555555555443
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.09 E-value=0.0094 Score=63.91 Aligned_cols=149 Identities=9% Similarity=0.008 Sum_probs=120.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCC----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006076 369 HGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGL----------VEEGKMLFESMRKEHMIRPSVEHYACMVDLL 437 (662)
Q Consensus 369 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 437 (662)
....++|++.++++.. +.|+. ..|+.--.++.+.|+ ++++.+.++.+.+.. +-+...|+.-.-.+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3345788999999998 56765 445555555555566 899999999998754 45778888888888
Q ss_pred hhcC--CHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc------
Q 006076 438 GRAN--KLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHC-NVELAERASKRLFELEPTNAGNYVLLADVYAAA------ 506 (662)
Q Consensus 438 ~~~g--~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 506 (662)
.+.| ++++++++++++ .. ..+...|+.-.......| ..+++.+.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8999 779999999998 33 347889998888888888 899999999999999999999999998888774
Q ss_pred --------CChHHHHHHHHHHHh
Q 006076 507 --------DMWDEVKRVKRLLEA 521 (662)
Q Consensus 507 --------g~~~~A~~~~~~m~~ 521 (662)
++++++.+.+++...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 567888888877655
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.04 E-value=0.0021 Score=49.50 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR 522 (662)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (662)
+...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999999999999999999988764
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.02 E-value=0.0028 Score=51.57 Aligned_cols=80 Identities=10% Similarity=0.030 Sum_probs=50.9
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076 410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFE 487 (662)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (662)
+...|+...+.. +.+...+..+...|.+.|++++|...+++. ...| +...|..+..++...|+.++|...++++++
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555554321 234566666777777777777777776665 2223 456677777777777777777777777777
Q ss_pred cCCC
Q 006076 488 LEPT 491 (662)
Q Consensus 488 ~~p~ 491 (662)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6654
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.02 E-value=0.0043 Score=52.62 Aligned_cols=106 Identities=8% Similarity=-0.079 Sum_probs=80.8
Q ss_pred CChHHHHHHHhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----CCCHHHHHHH
Q 006076 339 GKLELGQCVFDHMDK-RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH----AGLVEEGKML 413 (662)
Q Consensus 339 g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~ 413 (662)
+++++|.+.|++..+ .+.... |...|...+..++|++.|++..+.| +...+..|...|.. .+++++|.++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 467889999987653 344455 7777777788999999999999875 56777777777777 7899999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhc
Q 006076 414 FESMRKEHMIRPSVEHYACMVDLLGR----ANKLEEAAKIIEDL 453 (662)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m 453 (662)
|+...+. -++..+..|..+|.. .+++++|.++|++.
T Consensus 84 ~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 84 YSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 9988742 356677777777776 67777777777665
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.95 E-value=0.00089 Score=68.96 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=61.3
Q ss_pred cCCHHHHHHHHHhc---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---cchHHHHHH
Q 006076 440 ANKLEEAAKIIEDL---------RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFE-----LEPTN---AGNYVLLAD 501 (662)
Q Consensus 440 ~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~ 501 (662)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+. ...|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777766654 12233 35688888888889999999998888875 34444 456888999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 006076 502 VYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 502 ~~~~~g~~~~A~~~~~~m~~ 521 (662)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.80 E-value=0.019 Score=56.71 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=28.0
Q ss_pred CCChhHHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHH
Q 006076 353 KRDVVSWNSLISSYG--VHG---YGGKAIQIFKEMIYHGVSPSP-ISFVSVLGAC 401 (662)
Q Consensus 353 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 401 (662)
..+..+|...+.+.. ..+ ...+|+.+|++..+ ..|+. ..+..+.-++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 346667777766543 233 34688889998888 56764 3444333333
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.70 E-value=0.008 Score=47.48 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=35.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhH
Q 006076 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMR 418 (662)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 418 (662)
+...|..+...|...|++++|+..|++..+. .| +...|..+..++...|++++|.+.|+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666666666666666666666553 23 23455555556666666666666666554
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.67 E-value=0.17 Score=41.37 Aligned_cols=139 Identities=9% Similarity=0.028 Sum_probs=98.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006076 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA 447 (662)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 447 (662)
-.|..++..++..+..... +..-|+.++--....-+-+-..++++.+-+.+. ...+|++....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHHHH
Confidence 3566677777777666532 344455555544444555555555555543322 23567777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006076 448 KIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525 (662)
Q Consensus 448 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 525 (662)
..+-.+. .+......-+......|+.+.-..++..++..+|.++....-++++|.+.|+..+|.+++.+.-++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 7777665 344556677888889999999999999987777777899999999999999999999999999999984
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.56 E-value=0.013 Score=45.95 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=50.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhc-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 006076 433 MVDLLGRANKLEEAAKIIEDL-RIEP-GPK-VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496 (662)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (662)
....+.+.|++++|...+++. ...| +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677788888888888876 2334 556 788888888888999999999999999999887665
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.55 E-value=0.016 Score=59.61 Aligned_cols=93 Identities=13% Similarity=-0.022 Sum_probs=65.5
Q ss_pred cCCCHHHHHHHHHHhHHhc--CCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhc---------CCCCCH-HHHHHHH
Q 006076 403 HAGLVEEGKMLFESMRKEH--MIRP----SVEHYACMVDLLGRANKLEEAAKIIEDL---------RIEPGP-KVWGSLL 466 (662)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll 466 (662)
+.|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777776665422 1222 2456788888888888888888887765 234543 5688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCcch
Q 006076 467 GSCRIHCNVELAERASKRLFE-----LEPTNAGN 495 (662)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 495 (662)
..|...|++++|+.+++++++ ++|+.+.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999998875 46776543
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.54 E-value=0.095 Score=58.97 Aligned_cols=102 Identities=12% Similarity=0.106 Sum_probs=70.1
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHH
Q 006076 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309 (662)
Q Consensus 230 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 309 (662)
.....+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++ .. |..+...+...++.+..
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~--~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA--HD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH--TC---------HHHHHHHHHHTTCHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc--cC---------hhhhHHHHHHcCCHHHH
Confidence 34567899999999887764 5678999999999999999999999987 21 33444445556676666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 006076 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH 350 (662)
Q Consensus 310 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 350 (662)
.++-+.+...| -++....+|.++|++++|.+++.+
T Consensus 727 ~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 727 VTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 66555555544 124445556667777777766543
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.46 E-value=0.024 Score=58.29 Aligned_cols=98 Identities=10% Similarity=-0.086 Sum_probs=63.9
Q ss_pred HHhcCCCHHHHHHHHHHhHHhcC--CCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhc---------CCCCCH-HHHH
Q 006076 400 ACSHAGLVEEGKMLFESMRKEHM--IRP----SVEHYACMVDLLGRANKLEEAAKIIEDL---------RIEPGP-KVWG 463 (662)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~ 463 (662)
.+.+.|++++|..+++...+... +.| ...+++.|...|...|++++|+.++++. +..|+. .+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34455666666666665543211 112 2456777777777777777777777654 233443 5688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcchHH
Q 006076 464 SLLGSCRIHCNVELAERASKRLFE-----LEPTNAGNYV 497 (662)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 497 (662)
.|...|...|++++|+.+++++++ ++|+.+.+-.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 888889999999999999988875 4677665443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.45 E-value=0.0072 Score=47.38 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=53.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 465 LLGSCRIHCNVELAERASKRLFELEPTNAG-NYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455677889999999999999999999999 99999999999999999999999988643
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.10 E-value=0.04 Score=46.75 Aligned_cols=65 Identities=8% Similarity=-0.129 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 457 PGPKVWGSLLGSCRIHC---NVELAERASKRLFELE-P-TNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 457 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
++..+.-.+..++.+.+ +.++|..+++.+++.+ | ++...+..|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56666666666666666 5557777777777766 5 3456666777777777777777777777665
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.08 E-value=0.24 Score=55.57 Aligned_cols=131 Identities=12% Similarity=0.035 Sum_probs=73.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 006076 294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG 373 (662)
Q Consensus 294 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 373 (662)
..++..+.+.|.++.|.++.+... .-......+|+++.|.++.+.+. +...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 445555566666666655442110 11334566788888888877664 4567888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
.|.+.|.++.. |..+...+...|+.+...++-+..... | -++.-...|.+.|++++|.+++.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88888887643 223333334455555544443333221 1 1122333455556666666665554
Q ss_pred C
Q 006076 454 R 454 (662)
Q Consensus 454 ~ 454 (662)
.
T Consensus 763 ~ 763 (814)
T 3mkq_A 763 Q 763 (814)
T ss_dssp T
T ss_pred C
Confidence 3
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.92 E-value=0.089 Score=51.95 Aligned_cols=133 Identities=16% Similarity=0.069 Sum_probs=92.6
Q ss_pred CCCCHhHHHHHHHHHhc--CC---CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHh----hcC-------CHHHHHHH
Q 006076 387 VSPSPISFVSVLGACSH--AG---LVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLG----RAN-------KLEEAAKI 449 (662)
Q Consensus 387 ~~p~~~t~~~ll~a~~~--~g---~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~----~~g-------~~~~A~~~ 449 (662)
.+.+...|...+.+... .+ ...+|..+|++..+. .|+ ...|..+.-+|. ..+ .+.+|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 45566777777766443 23 357899999999863 675 344443333332 111 11122222
Q ss_pred HHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 450 IEDLR-IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 450 ~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
...+. .+.++.+|..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 22232 2457888888877777889999999999999999975 6788899999999999999999998877644
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.69 E-value=0.042 Score=51.97 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=68.4
Q ss_pred HHHHHHHHHhc-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CChHH
Q 006076 443 LEEAAKIIEDL-RIEPG---PKVWGSLLGSCRI-----HCNVELAERASKRLFELEPTN-AGNYVLLADVYAAA-DMWDE 511 (662)
Q Consensus 443 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 511 (662)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. ..+++..++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45555555554 45565 5678888888887 499999999999999999974 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCcCCC
Q 006076 512 VKRVKRLLEARGLQKVP 528 (662)
Q Consensus 512 A~~~~~~m~~~~~~~~~ 528 (662)
|.+.+++....+....|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999886654333
No 223
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.41 E-value=3.5 Score=44.08 Aligned_cols=250 Identities=8% Similarity=-0.041 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc
Q 006076 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA 302 (662)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~ 302 (662)
..-+.-+..+.+.+++......+.. +..+...-.....+....|+..+|......+ -..| .........++..+.+
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l--W~~~-~~~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL--WLTG-KSQPNACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH--HSCS-SCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH--HhCC-CCCcHHHHHHHHHHHH
Confidence 3445556667778888888886666 4345555556677778888887777777766 4444 2334455566666665
Q ss_pred cCCHHH--HHHHHHHHHHhC-----------CCCch-hHHHHHHHHHHhcCChHHHHHHHhhCCCCChhH---HHHHHHH
Q 006076 303 LAALEQ--GKMIHGYILRRG-----------LDSIL-PVVSALVTMYARCGKLELGQCVFDHMDKRDVVS---WNSLISS 365 (662)
Q Consensus 303 ~~~~~~--a~~~~~~~~~~g-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~---~~~li~~ 365 (662)
.|.+.. ..+=+..+...| +.++. .....++..+. +...+....... .++... +..-+.-
T Consensus 149 ~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 149 SGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFAS 224 (618)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHH
Confidence 443322 222222222221 11111 11112221111 122222222221 111111 1111222
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhHHH----HHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 006076 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFV----SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN 441 (662)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 441 (662)
+.+ .+.+.|..+|....... ..+..... .+.......+...++...+...... .++.....-.+....+.|
T Consensus 225 lar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 225 VAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTG 299 (618)
T ss_dssp HHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHT
T ss_pred HHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCC
Confidence 333 36788888887776543 22332222 2222333444344555555554322 233333334444455778
Q ss_pred CHHHHHHHHHhcCCCC-CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076 442 KLEEAAKIIEDLRIEP-GP---KVWGSLLGSCRIHCNVELAERASKRLFE 487 (662)
Q Consensus 442 ~~~~A~~~~~~m~~~p-~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (662)
+++.|...|+.|+..+ +. .-| +..+....|+.++|..+++.+.+
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW--~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYW--QADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHH--HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccccccccHhHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888888888885332 21 234 33456677888888888888865
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.35 E-value=0.016 Score=58.56 Aligned_cols=403 Identities=10% Similarity=0.086 Sum_probs=210.2
Q ss_pred chhhhccCCCchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCCHhhHHHHHHHHhcCCChH
Q 006076 18 HTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLS 97 (662)
Q Consensus 18 ~~~li~~y~~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 97 (662)
.+.||.--.+++.|...= ++...+ ..|+. +-.+..+.++..+|++.|-+.. |...|..++.++.+.|.++
T Consensus 31 ~~VL~e~i~~ldRa~eyA-~~~n~p--~VWs~-----LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~e 100 (624)
T 3lvg_A 31 VQVLIEHIGNLDRAYEFA-ERCNEP--AVWSQ-----LAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWE 100 (624)
T ss_dssp TTTCCGGGCCSTTTTTSS-SSCCCC--CCSSS-----HHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCT
T ss_pred HHHHHHhccccHHHHHHH-HHhCCc--cHHHH-----HHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHH
Confidence 344444433777777766 555554 34666 8889999999999988776433 4455778888888888888
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCC
Q 006076 98 DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177 (662)
Q Consensus 98 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 177 (662)
+-...+....+. ..++.+=+.|+-+|+|.+++.+-.+++.. +|+.--..+.+-|...|.++.|.-+|..+.....
T Consensus 101 dLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak 175 (624)
T 3lvg_A 101 ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR 175 (624)
T ss_dssp THHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT
T ss_pred HHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHH
Confidence 777777655554 34556667888889888877664433321 2222222233333333333333333222211000
Q ss_pred ------------------CCCCChhhHHHHHHHHHhCCC--------------------------CccchHHHHHHHHHH
Q 006076 178 ------------------GIRSDRFTYTYVLKACVASSC--------------------------GFSLLKHGKEIHASV 213 (662)
Q Consensus 178 ------------------g~~p~~~t~~~ll~~~~~~~~--------------------------~~~~~~~a~~~~~~~ 213 (662)
.-.-+..||--+-.+|...+. ..|.+++-..+++.-
T Consensus 176 LAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 001233455555555554443 122255555555443
Q ss_pred HHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHc----CCCC-------CHhHHHHHHHHHHHcCChhHHHHHH-----
Q 006076 214 LRHGY-NGIVHIMTTLIDMYARFGCVMYAGFVFSQ----MAVK-------NVVSWSAMIACYARNGMAFEALELF----- 276 (662)
Q Consensus 214 ~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~----~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~----- 276 (662)
+ |+ ....-+++-|.-.|+|-. .++-.+-++. +--| ....|.-++-.|.+-.+++.|....
T Consensus 256 l--glErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~ 332 (624)
T 3lvg_A 256 L--GLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT 332 (624)
T ss_dssp T--TSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHH
T ss_pred h--CCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCCh
Confidence 3 22 234567788888888753 3333333332 2112 3456899999999888888764321
Q ss_pred ---HHHh-hhhCCCcCCHHHHHHHHHHHH---------------ccCCHHHHHHHHHHHHHh----------CCCCchhH
Q 006076 277 ---REMI-MESHDLCPNSVTMVSVLQACA---------------ALAALEQGKMIHGYILRR----------GLDSILPV 327 (662)
Q Consensus 277 ---~~m~-~~~~~~~p~~~t~~~ll~a~~---------------~~~~~~~a~~~~~~~~~~----------g~~~~~~~ 327 (662)
+... ..-..-.+|...|-..++-|. ..=+...+.+++...-.. .-..+..+
T Consensus 333 ~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aV 412 (624)
T 3lvg_A 333 DAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSV 412 (624)
T ss_dssp HHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHH
T ss_pred hhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHH
Confidence 1100 000001234444444443333 222222222222211000 01122334
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC------------CChhHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH
Q 006076 328 VSALVTMYARCGKLELGQCVFDHMDK------------RDVVSWNSL-ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF 394 (662)
Q Consensus 328 ~~~li~~y~~~g~~~~A~~~~~~m~~------------~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 394 (662)
-.++-+.|....+++.-+.-.+.-.. .+..-+.-+ ...|.+++++.+++++.++ ...|
T Consensus 413 NeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------Dkly 483 (624)
T 3lvg_A 413 NESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLY 483 (624)
T ss_dssp HHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccH
Confidence 44555666666655544433222221 111212211 2234555666665554321 1223
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 006076 395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE 451 (662)
Q Consensus 395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (662)
.-.+...+.+|+.+-+.++++...+. -+.+.|.+.+-.|-..=+++-++++--
T Consensus 484 kDAietAa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlElaW 536 (624)
T 3lvg_A 484 KDAMQYASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLETAW 536 (624)
T ss_dssp TGGGTTTTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHHHH
Confidence 33445567788999999999988753 356677777777777778888888743
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.31 E-value=0.12 Score=40.86 Aligned_cols=74 Identities=15% Similarity=0.064 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhc-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 006076 426 SVEHYACMVDLLGRANKLEEAAKIIEDL-----R----IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496 (662)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (662)
+..-+..|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++++++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444455666666666666666666554 0 123466788889999999999999999999999999986664
Q ss_pred HHH
Q 006076 497 VLL 499 (662)
Q Consensus 497 ~~l 499 (662)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.25 E-value=0.12 Score=39.97 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=49.4
Q ss_pred CCChHHHHHHHHHHhhcCC---HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076 424 RPSVEHYACMVDLLGRANK---LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN 492 (662)
Q Consensus 424 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (662)
+.++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...++++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3566677777777754444 67888887776 3344 55666677777888888888888888888888873
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.41 Score=41.63 Aligned_cols=128 Identities=14% Similarity=0.105 Sum_probs=77.4
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHH
Q 006076 334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 413 (662)
Q Consensus 334 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 413 (662)
...++|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+..+ |..+.--|.-.|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888777766 3566788888888888888888888876543 22333344445666555444
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076 414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485 (662)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 485 (662)
-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|..+.|.++.+.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 3333221 1 134444556667888888888887753222211 123466677777776654
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.79 E-value=0.12 Score=43.72 Aligned_cols=86 Identities=16% Similarity=0.017 Sum_probs=55.8
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhc-CCC-C--CHHHHHHHHHHHHhcCCHHHHHH
Q 006076 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN---KLEEAAKIIEDL-RIE-P--GPKVWGSLLGSCRIHCNVELAER 480 (662)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~ 480 (662)
..+++-|....+. + +++..+.-.+.-++++.+ +++++..++++. ... | ....+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3344444444332 1 256666666666666666 455666666655 212 3 23445567778899999999999
Q ss_pred HHHHHHhcCCCCcch
Q 006076 481 ASKRLFELEPTNAGN 495 (662)
Q Consensus 481 ~~~~~~~~~p~~~~~ 495 (662)
.++.+++.+|++..+
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 999999999987543
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.17 E-value=0.015 Score=58.76 Aligned_cols=237 Identities=11% Similarity=0.093 Sum_probs=135.2
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHH
Q 006076 114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193 (662)
Q Consensus 114 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~ 193 (662)
.+.+|..|..++.+.+++.+|.+-| +...|+..|..+|....+.|.+++-+..+.-.++. .-++..=+.++-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~----~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT----CCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccHHHHHHHH
Confidence 3456666666666666666665544 33446666666777777777776666655544433 12223334566666
Q ss_pred HhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC------------------------
Q 006076 194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA------------------------ 249 (662)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------------------------ 249 (662)
++.+. +.+-+++. -.|+..-...+.+-+...|.++.|.-+|..+.
T Consensus 127 Ak~~r----L~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 127 AKTNR----LAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HTSCS----SSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HhhCc----HHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66655 33322222 12343334455555666666666666665553
Q ss_pred CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHH
Q 006076 250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS 329 (662)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 329 (662)
..++.||-.+-.+|...+.+.-|.-.--.+. +.||. ...++..|-..|.+++-..+++..... -.....+++
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFT 267 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFT 267 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHH
Confidence 1367789999899998888776654433331 11111 122344466677777777766655421 134677778
Q ss_pred HHHHHHHhcCChHHHHHHHhh----CCCC-------ChhHHHHHHHHHHhcCChHHHH
Q 006076 330 ALVTMYARCGKLELGQCVFDH----MDKR-------DVVSWNSLISSYGVHGYGGKAI 376 (662)
Q Consensus 330 ~li~~y~~~g~~~~A~~~~~~----m~~~-------~~~~~~~li~~~~~~g~~~~A~ 376 (662)
-|.-.|+|- +.++-.+-++. +.-| ....|.-++-.|.+-..++.|.
T Consensus 268 ELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 268 ELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 887778775 34443333332 2212 3446888888888777777664
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.15 E-value=2.6 Score=36.58 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=73.3
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHH
Q 006076 230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG 309 (662)
Q Consensus 230 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 309 (662)
+...++|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+. . | +..+.-.|...|+.+.-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~--~------D---~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ--H------S---FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT--T------C---HHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh--C------C---HHHHHHHHHHhCCHHHH
Confidence 3456789999999988776 46778999999999999999999999876 2 2 33444445667777776
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006076 310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353 (662)
Q Consensus 310 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 353 (662)
..+-+.....| -++.....+.-.|+++++.++|.+..+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 66655555554 134444455567888887777765543
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.34 E-value=4.9 Score=37.99 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=73.9
Q ss_pred cCChHHHHHHHhhCCCCCh--hHHHHHHHH-HHhc--CC------hHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHhc
Q 006076 338 CGKLELGQCVFDHMDKRDV--VSWNSLISS-YGVH--GY------GGKAIQIFKEMIYHGVSPS---PISFVSVLGACSH 403 (662)
Q Consensus 338 ~g~~~~A~~~~~~m~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~ 403 (662)
.|+..+-.+.+.+....++ ..|..++.+ +... |. ..+|...+++..+ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 4455555566666654333 467766653 3332 32 4466666777776 5676 4567777777777
Q ss_pred C-----CCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhc-CCHHHHHHHHHhc
Q 006076 404 A-----GLVEEGKMLFESMRKEHMIRP--SVEHYACMVDLLGRA-NKLEEAAKIIEDL 453 (662)
Q Consensus 404 ~-----g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~-g~~~~A~~~~~~m 453 (662)
. |+.++|.+.|++..+ +.| +..++..+.+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4 888888888888875 345 377777888888774 8888888888776
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.68 E-value=0.55 Score=38.24 Aligned_cols=69 Identities=17% Similarity=0.008 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHhhcCCHHH---HHHHHHhc-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076 425 PSVEHYACMVDLLGRANKLEE---AAKIIEDL-RIE-P--GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493 (662)
Q Consensus 425 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (662)
++..+--.+.-++.+.....+ ++.++++. ... | .....-.|.-++.+.|++++|.+..+.+++.+|+|.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 445555555555555554444 55555544 111 2 111222334455555555555555555555555543
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.16 E-value=0.63 Score=36.59 Aligned_cols=64 Identities=8% Similarity=-0.127 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELE-------PTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
+..-+..|...+...++++.|...++++++.. +..+..+..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44556678889999999999999999998742 23456788999999999999999999998875
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.60 E-value=1.3 Score=48.29 Aligned_cols=54 Identities=15% Similarity=0.026 Sum_probs=50.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
.-|...|+++.|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.+..++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 346778999999999999999999999999999999999999999999999886
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.33 E-value=6.9 Score=32.42 Aligned_cols=65 Identities=8% Similarity=-0.082 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 457 PGPKVWGSLLGSCRIHC---NVELAERASKRLFELEPT-NAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 457 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
|+..+--.+..++.+.. +..+++.+++.+....|. .......|+-++.+.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444444443 344566666666666653 234455666677777777777777776664
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.06 E-value=2.6 Score=34.25 Aligned_cols=86 Identities=16% Similarity=0.063 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHH---HHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCHH
Q 006076 370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE---GKMLFESMRKEHMIRP--SVEHYACMVDLLGRANKLE 444 (662)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~ 444 (662)
.....+.+-|.+....|. |+..|--.+.-++.++.+... |+.+++.+.+.. .| .....-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHH
Confidence 344455566666555553 666666666777777776655 888888776431 23 3445556777788888888
Q ss_pred HHHHHHHhc-CCCCC
Q 006076 445 EAAKIIEDL-RIEPG 458 (662)
Q Consensus 445 ~A~~~~~~m-~~~p~ 458 (662)
+|.+.++.+ .++|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 888888876 44564
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.55 E-value=2.9 Score=34.97 Aligned_cols=51 Identities=12% Similarity=-0.109 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076 473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG 523 (662)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 523 (662)
+|.++|..+|+.++.+...-+..+...+..-.+.|+++.|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 566777777777766543334444555555566777777777777666543
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.02 E-value=19 Score=34.48 Aligned_cols=171 Identities=11% Similarity=0.067 Sum_probs=97.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHH----HHHHhhCCCCCCCChhhHHHHHHH
Q 006076 117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL----YRRMNGTGTGIRSDRFTYTYVLKA 192 (662)
Q Consensus 117 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~~~g~~p~~~t~~~ll~~ 192 (662)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+...+. ++++|..+...++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~--~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLA--EVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Confidence 3455666678888888888876432 2234555666555443 4444455 677777777777766
Q ss_pred HHhCCCC-ccchHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHc---
Q 006076 193 CVASSCG-FSLLKHGKEIHASVLRHGY--NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN--- 266 (662)
Q Consensus 193 ~~~~~~~-~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~--- 266 (662)
+...... ..+.+-..+....-.+.|- ..++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 6553321 1122233333333344432 246777888888899999999998887643333566666666555544
Q ss_pred CChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006076 267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL 317 (662)
Q Consensus 267 g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 317 (662)
|...++--+..+. ++. +...+++..|..++....
T Consensus 182 ~~~~e~dlf~~Ra----------------VL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 182 IEDSTVAEFFSRL----------------VFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCHHHHHHHHHHH----------------HHH-HHHTTBHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHH----------------HHH-HHHhcCHHHHHHHHHHHH
Confidence 5544432222221 222 334567777777666543
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.68 E-value=5.9 Score=33.18 Aligned_cols=54 Identities=11% Similarity=-0.039 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 006076 441 NKLEEAAKIIEDL-R-IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494 (662)
Q Consensus 441 g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (662)
++.++|.++|+.+ . .+.=...|-....--.++|++..|.+++.+++++.|.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 4555566665555 1 0111666766666677888889999998888888887543
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.70 E-value=14 Score=43.11 Aligned_cols=164 Identities=10% Similarity=0.016 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCC
Q 006076 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305 (662)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~ 305 (662)
..++..+.+.+..+.|..+..-.+. +..+--.+..+|...|++++|.+.|.+. ..|+..+..... .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka---a~~~~~~~~l~~----------~ 881 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT---SLVLYSHTSQFA----------V 881 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC---CCSCTTCCCSCS----------S
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH---hhhhcccchhhh----------h
Confidence 3456666777888777776665544 4444445667788899999999999865 233322211100 0
Q ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhh----CCCCC--h--hHHHHHHHHHHhcCChHHH
Q 006076 306 LEQGKMIHGYILRRG--LDSILPVVSALVTMYARCGKLELGQCVFDH----MDKRD--V--VSWNSLISSYGVHGYGGKA 375 (662)
Q Consensus 306 ~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----m~~~~--~--~~~~~li~~~~~~g~~~~A 375 (662)
... ...+.... ...-..-|.-++..+.+.|.++.+.++-.. ....+ . ..|..+..++...|++++|
T Consensus 882 ~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 882 LRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred hcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 000 01111111 111233466677777777777776655432 22211 1 2588889999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHH
Q 006076 376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE 409 (662)
Q Consensus 376 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 409 (662)
...+..+.....+ ...+..++..++..|..+.
T Consensus 958 y~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 958 HVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 9988888764333 4556667776666665443
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=85.94 E-value=13 Score=30.46 Aligned_cols=83 Identities=16% Similarity=0.048 Sum_probs=49.0
Q ss_pred cCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHh
Q 006076 338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417 (662)
Q Consensus 338 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 417 (662)
||++......+-.+.. +....+.-++.+..+|+-++-.+++.++.. +.+|++.....+.+||.+.|+..++.+++.+.
T Consensus 74 C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4444444444443322 222334455666677777777777777533 24666777777777777777777777777777
Q ss_pred HHhcCC
Q 006076 418 RKEHMI 423 (662)
Q Consensus 418 ~~~~~~ 423 (662)
.+ .|+
T Consensus 152 C~-kG~ 156 (172)
T 1wy6_A 152 CK-KGE 156 (172)
T ss_dssp HH-TTC
T ss_pred HH-hhh
Confidence 63 344
No 242
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.92 E-value=10 Score=29.06 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI 383 (662)
Q Consensus 304 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 383 (662)
...++|..|-+.+...+. ...+--.=+..+...|++++|..+.+.+.-||+..|-+|-. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 355667666666665543 22222222345678999999999999999999999988865 46677888877777777
Q ss_pred HcCCCCCHhHHHH
Q 006076 384 YHGVSPSPISFVS 396 (662)
Q Consensus 384 ~~g~~p~~~t~~~ 396 (662)
.+| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 455555543
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.19 E-value=28 Score=33.61 Aligned_cols=138 Identities=14% Similarity=0.049 Sum_probs=77.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHH----HHHhhCCCCCCCChhhHHHHHHHH
Q 006076 118 VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY----RRMNGTGTGIRSDRFTYTYVLKAC 193 (662)
Q Consensus 118 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~~~g~~p~~~t~~~ll~~~ 193 (662)
+.++..-|.+.+++++|.+++-.- ...+.+.|+...|-++- +...+. ++++|..+...++..+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~--~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQA--GQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHH--TCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Confidence 445556678888888888876331 22344556655444433 444445 6777777777777666
Q ss_pred HhCCCCc-cchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCC
Q 006076 194 VASSCGF-SLLKHGKEIHASVLRHG--YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268 (662)
Q Consensus 194 ~~~~~~~-~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 268 (662)
....... .+..-..+...+-.+.| -..|+.....+...|.+.+++.+|+.-|=.-.++....+..|+.-+...+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 6554311 11112222333333334 234566777788888888888888888743222233566555554444443
No 244
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.07 E-value=10 Score=28.92 Aligned_cols=85 Identities=13% Similarity=-0.014 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q 006076 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282 (662)
Q Consensus 203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 282 (662)
-++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||+++|-+|-. .+.|..+++..-+.++ .
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l--a 95 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL--G 95 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH--H
Confidence 7788888888777663 44444444556778999999999999999999999988765 4778888888888777 5
Q ss_pred hCCCcCCHHHHH
Q 006076 283 SHDLCPNSVTMV 294 (662)
Q Consensus 283 ~~~~~p~~~t~~ 294 (662)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 555 44444443
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.01 E-value=9.4 Score=29.16 Aligned_cols=87 Identities=14% Similarity=0.108 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY 384 (662)
Q Consensus 305 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (662)
..++|..|-+.+...+. ...+--.=+..+...|++++|..+.+.+.-||+..|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666665543 22222222345678999999999999999999999988765 467888888888878877
Q ss_pred cCCCCCHhHHHH
Q 006076 385 HGVSPSPISFVS 396 (662)
Q Consensus 385 ~g~~p~~~t~~~ 396 (662)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 555555543
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.98 E-value=11 Score=28.80 Aligned_cols=85 Identities=14% Similarity=0.085 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q 006076 203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME 282 (662)
Q Consensus 203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 282 (662)
-++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||+++|-+|-.+ +.|..+++..-+.++ .
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l--a 96 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL--A 96 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH--H
Confidence 7788888888877763 444444445567789999999999999999999999888654 678888888888777 5
Q ss_pred hCCCcCCHHHHH
Q 006076 283 SHDLCPNSVTMV 294 (662)
Q Consensus 283 ~~~~~p~~~t~~ 294 (662)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 555 44444443
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.55 E-value=7.4 Score=33.22 Aligned_cols=110 Identities=8% Similarity=-0.038 Sum_probs=54.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCC-----CCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHh-HHHH
Q 006076 331 LVTMYARCGKLELGQCVFDHMD-----KRDV-------VSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPI-SFVS 396 (662)
Q Consensus 331 li~~y~~~g~~~~A~~~~~~m~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-t~~~ 396 (662)
=+..+...|.++.|+-+.+.+. .|++ .+...+.+++...|++.+|...|++.++.. .-|... +..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3555666777777766655432 2332 134455666667777777777777654321 111111 1111
Q ss_pred HHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 006076 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454 (662)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (662)
+-. ..... ......++.+.---+...|.+.|++++|+.+++.+|
T Consensus 106 ~~~----~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 106 TGN----SASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccc----cCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 100 00000 000122344454556777778888888888887775
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.08 E-value=3.1 Score=41.75 Aligned_cols=60 Identities=10% Similarity=-0.030 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
...++.++...|+.+++...++.+...+|-+-..|..|+.+|.++|+..+|.+.|+....
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566777888888888888888888888888888899999999999999888887654
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.65 E-value=45 Score=33.93 Aligned_cols=87 Identities=7% Similarity=0.126 Sum_probs=53.0
Q ss_pred HHHHHHhCCCCccchHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHcCC--------CCC--H
Q 006076 189 VLKACVASSCGFSLLKHGKEIHASVLRH--GYNGI---VHIMTTLIDMYARFGCVMYAGFVFSQMA--------VKN--V 253 (662)
Q Consensus 189 ll~~~~~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~~--------~~~--~ 253 (662)
+...+-..|+ +.+|..++..+... |..+. +..+..-+..|...+++..|..++.++. .|+ .
T Consensus 143 La~i~e~~g~----~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 143 LVEIKKEEGK----IDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHTC----HHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHccC----HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3344445566 77777777776543 22111 3456666777777888887777766542 111 2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHH
Q 006076 254 VSWSAMIACYARNGMAFEALELFREM 279 (662)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m 279 (662)
.-+..++..+...+++.+|-+.|.+.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34556666677777777777777666
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.20 E-value=7.3 Score=31.80 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076 477 LAERASKRLFELEPT-NAGNYVLLADVYAAADMWDEVKRVKRLLE 520 (662)
Q Consensus 477 ~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (662)
+|+.+++.+...+|. ....+..|+-++.+.|++++|.+..+.+.
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444442 12333444444555555555555554444
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.25 E-value=12 Score=28.71 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006076 269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT 333 (662)
Q Consensus 269 ~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 333 (662)
.-+..+-++.+ ....+.|++....+.|.||.+.+++..|.++++-+...- .+...+|..+++
T Consensus 26 ~~e~rrglN~l--~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTL--VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHH--TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHH--hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33566667777 677888999999999999999999999999998876542 222445665554
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.19 E-value=58 Score=35.54 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=32.0
Q ss_pred HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 006076 401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 454 (662)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (662)
|...|+++.|+++-++.... .+.+-.+|..|...|...|+++.|+-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34456666666666666542 13345666666666777777777666666664
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.77 E-value=13 Score=37.19 Aligned_cols=68 Identities=7% Similarity=0.065 Sum_probs=41.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHH----hcCCCCChHH
Q 006076 361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK----EHMIRPSVEH 429 (662)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 429 (662)
.++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|.+.|+...+ +.|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455566666777777666666553 233556666777777777777777766665532 3456665544
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.64 E-value=11 Score=29.09 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435 (662)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 435 (662)
.-+..+-++.+....+-|++....+.|.||.+.+++..|.++|+.++.+.| +...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 346666777777778899999999999999999999999999999976543 33446766654
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=76.49 E-value=1e+02 Score=34.48 Aligned_cols=147 Identities=14% Similarity=0.028 Sum_probs=71.2
Q ss_pred HHHhcCCHHHHHHHHHcCCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHH---HHHHHHHccC
Q 006076 231 MYARFGCVMYAGFVFSQMAV--K-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV---SVLQACAALA 304 (662)
Q Consensus 231 ~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~---~ll~a~~~~~ 304 (662)
.|.-.|+-+....++..+.+ . ++.-.-++.-++...|+.+.+..+.+.+ .... .|. .-|. .+.-+|+..|
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L--~~~~-dp~-vRygaa~alglAyaGTG 574 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKM--LASD-ESL-LRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHH--HHCS-CHH-HHHHHHHHHHHHTTTSC
T ss_pred hhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHH--HhCC-CHH-HHHHHHHHHHHHhcCCC
Confidence 34455665555555554321 1 2222333334455667777777777766 3321 121 2222 2223456777
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH--hcCChHHHHHHHhhCCC-CC--hhHHHHHHHHHHhcCCh-HHHHHH
Q 006076 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYA--RCGKLELGQCVFDHMDK-RD--VVSWNSLISSYGVHGYG-GKAIQI 378 (662)
Q Consensus 305 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~--~~g~~~~A~~~~~~m~~-~~--~~~~~~li~~~~~~g~~-~~A~~~ 378 (662)
+.....+++..+.... +..+-...+-+.+ ..|+.+.+.++++.+.+ .| +..-.++.-|....|.. .+|+++
T Consensus 575 n~~aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CHHHHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 7777776777766532 2222233333333 35666666666664432 23 22222333334434433 466777
Q ss_pred HHHHHH
Q 006076 379 FKEMIY 384 (662)
Q Consensus 379 ~~~m~~ 384 (662)
+..+..
T Consensus 652 L~~L~~ 657 (963)
T 4ady_A 652 LDPLTK 657 (963)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 777654
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.20 E-value=65 Score=32.02 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=24.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 006076 397 VLGACSHAGLVEEGKMLFESMRKEHMIRP----SVEHYACMVDLLGRANKLEEAAKIIED 452 (662)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (662)
+..-|...|++.+|.+++..+.+...-.. -.++|..-+.+|...+++.++...+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34444455555555555544443211100 123344444455555555555544443
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.35 E-value=18 Score=33.65 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=31.6
Q ss_pred HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
...+.|+++++++....-++.. +-|...-..|+..||-.|+++.|.+-++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445666666666666655442 445666666666677777777666655544
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.30 E-value=25 Score=40.85 Aligned_cols=123 Identities=8% Similarity=-0.127 Sum_probs=74.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC--CC-----------------
Q 006076 396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR--IE----------------- 456 (662)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~----------------- 456 (662)
.++..+...+..+.+.++.... +.+....-.+..+|..+|++++|.+.|.+.. +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3444555555555555443322 2233333445566667777777777776651 10
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCcc----hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 457 ------PGPKVWGSLLGSCRIHCNVELAERASKRLFELEP-TNAG----NYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 457 ------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
.-...|.-++..+.+++..+.+.++.+.+++..+ ++.. .|..+.+.+...|++++|...+-.++....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 0123456667777788888888888888776543 3221 456677777888888888888877766544
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.79 E-value=67 Score=31.02 Aligned_cols=169 Identities=11% Similarity=0.016 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHH----HHHhhhhCCCcCCHHHHHHHHH
Q 006076 223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELF----REMIMESHDLCPNSVTMVSVLQ 298 (662)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~~p~~~t~~~ll~ 298 (662)
..+.++..=|.+.+++++|.+++..- ...+.+.|+...|-++- +-. ...++++|..+...++.
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy--~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTF--RQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHH--HHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHH--HHcCCCCCHHHHHHHHH
Confidence 34566777789999999998875432 22344555554443332 333 45566677766666666
Q ss_pred HHHccCCHH-HHHHHHHHH----HHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCC
Q 006076 299 ACAALAALE-QGKMIHGYI----LRRG--LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371 (662)
Q Consensus 299 a~~~~~~~~-~a~~~~~~~----~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 371 (662)
.+.....-+ .=..+...+ .+.| ..-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 665444211 112233333 3334 345677888899999999999999998853333334566555554444333
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHH
Q 006076 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419 (662)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 419 (662)
..+ +|...-.++|. |.-.+++..|..+++...+
T Consensus 183 ~~e--------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 SHT--------------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGG--------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred Ccc--------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 211 12222333333 4456788888887766653
No 260
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=70.33 E-value=56 Score=28.70 Aligned_cols=80 Identities=11% Similarity=-0.005 Sum_probs=37.4
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 006076 323 SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 402 (662)
Q Consensus 323 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 402 (662)
++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.+.|.. ++...+.++.. .++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34445555555555555544444444444455555444455555555443 23333333332 344444444444554
Q ss_pred cCCC
Q 006076 403 HAGL 406 (662)
Q Consensus 403 ~~g~ 406 (662)
+.+.
T Consensus 169 ~~~~ 172 (211)
T 3ltm_A 169 EIGG 172 (211)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 4444
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.68 E-value=23 Score=28.91 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076 374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD 435 (662)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 435 (662)
+..+-++.+....+-|++....+.|.||.+.+++..|.++|+.++.+. .+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 556666777777889999999999999999999999999999997654 344556766654
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=68.90 E-value=29 Score=28.27 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=42.4
Q ss_pred CChHHHHHHHHHHhhcCCH---HHHHHHHHhc-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 006076 425 PSVEHYACMVDLLGRANKL---EEAAKIIEDL-RIEP--GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494 (662)
Q Consensus 425 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (662)
|++.+--.+.-++.+.... .+++.++++. ...| ....+--|.-|+.+.|++++|.+..+.+++.+|+|..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4455444455555555433 3455555544 1123 2334445667788888888888888888888888743
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.45 E-value=49 Score=27.32 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHHHhhcCCHH---HHHHHHHhc-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 006076 424 RPSVEHYACMVDLLGRANKLE---EAAKIIEDL-RIEP-G-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG 494 (662)
Q Consensus 424 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (662)
.|+..+--.+.-++.+....+ +++.++++. ...| + ....--|.-++.+.|++++|.+..+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 355555555555555555433 455555554 1123 1 223334667889999999999999999999998743
No 264
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.56 E-value=41 Score=31.06 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHh
Q 006076 303 LAALEQGKMIHGYILRRGLDSILP--VVSALVTMYARCGKLELGQCVFD 349 (662)
Q Consensus 303 ~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~ 349 (662)
.+.......+.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 334333445555666666544421 12233444455666666666665
No 265
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=66.97 E-value=23 Score=35.81 Aligned_cols=82 Identities=11% Similarity=0.064 Sum_probs=39.2
Q ss_pred HHHHHHhCCCchHHHHHHhcCCCCCHhh--HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHhhcCCC
Q 006076 55 LIQSLCKQGNLRQALDVLSIEPNPTQHT--YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPF--LVTKLINVYSHFDS 130 (662)
Q Consensus 55 li~~~~~~g~~~~A~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~ 130 (662)
.+...+..|+.+-+..+++.+..|+... ..+.|...+..|+.+-++ .+++.|..++.. ...+.+...++.|.
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQTPLHCAARIGH 92 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 4555566777777776766544443221 122333344456655333 334445433221 12223334445566
Q ss_pred hHHHHHHHhc
Q 006076 131 VDDARHVFDK 140 (662)
Q Consensus 131 ~~~A~~~f~~ 140 (662)
.+-+.-+++.
T Consensus 93 ~~~v~~Ll~~ 102 (437)
T 1n11_A 93 TNMVKLLLEN 102 (437)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 6666666554
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=66.67 E-value=92 Score=29.75 Aligned_cols=168 Identities=11% Similarity=-0.026 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCCHhHHHHHHHHHh
Q 006076 327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI----FKEMIYHGVSPSPISFVSVLGACS 402 (662)
Q Consensus 327 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~ 402 (662)
.|.++..=|.+.+++++|.+++.. -...+.++|+...|-++ .+-..+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344556668888888888887543 22345566776665554 444555678888877777777665
Q ss_pred cCCC--H---HHHHHHHHHhHHhcC-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---C
Q 006076 403 HAGL--V---EEGKMLFESMRKEHM-IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH---C 473 (662)
Q Consensus 403 ~~g~--~---~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~---g 473 (662)
.... + +-..+....-.+..+ -.-++.....+...|.+.|++.+|..-|-- +..-|...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence 5321 1 111222222222111 123678888899999999999999887652 2112455565555554444 4
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHH-HHHHHHHhcCChHHHHHHHHHHHh
Q 006076 474 NVELAERASKRLFELEPTNAGNYV-LLADVYAAADMWDEVKRVKRLLEA 521 (662)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 521 (662)
...++ ..|. ..+--|.-.|+...|..+++...+
T Consensus 183 ~~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 43332 2222 123345678899999999887654
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.47 E-value=1.2e+02 Score=30.83 Aligned_cols=95 Identities=15% Similarity=0.124 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc-CCCCC----hH
Q 006076 359 WNSLISSYGVHGYGGKAIQIFKEMIYH--GVSPS---PISFVSVLGACSHAGLVEEGKMLFESMRKEH-MIRPS----VE 428 (662)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~~~----~~ 428 (662)
...|...|...|++.+|.+++.++... |..+. ...+...+..|...+++..|..+...+.... ...+. ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456778888999999999999988753 22221 1355666778889999999999998874211 12222 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 429 HYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
.|.+++..+...+++.+|...|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6788888999999999998887765
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=66.34 E-value=61 Score=27.58 Aligned_cols=111 Identities=14% Similarity=0.028 Sum_probs=58.5
Q ss_pred HHHHHhcCCHHHHHHHHHcCC-----CCCH-------hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHH
Q 006076 229 IDMYARFGCVMYAGFVFSQMA-----VKNV-------VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSV 296 (662)
Q Consensus 229 i~~y~~~g~~~~A~~~f~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~l 296 (662)
+..+...|.++.|+-+.+.+. .+++ .+...+..++...|++..|...|++.+.....+.-+..+.+++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 455666777877777666542 2332 1445566777778888888888877642222211111111111
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 006076 297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD 352 (662)
Q Consensus 297 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 352 (662)
- . ...... .....++..+---+..+|.+.|+.++|..+++.++
T Consensus 107 ~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 107 G-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred c-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 0 0 000000 01122344555557788888888888888888886
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.32 E-value=12 Score=34.74 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=30.0
Q ss_pred HHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076 436 LLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPT 491 (662)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (662)
.+.+.|.+++|++....- +-.| |...=..|+.-++..|++++|..-++.+.+++|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 344556666665554432 2233 3344444555566666666666666666666654
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.03 E-value=64 Score=26.35 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=38.4
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076 452 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA 500 (662)
Q Consensus 452 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (662)
.+.+-|++.+..+-+.+|++.+|+..|.++++-+...-.+....|-.++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3457899999999999999999999999999988754333345565554
No 271
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=60.10 E-value=97 Score=30.94 Aligned_cols=197 Identities=11% Similarity=0.043 Sum_probs=96.0
Q ss_pred CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCC---HhhHHHHHHHHhcCCChHHHHHHH
Q 006076 27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPT---QHTYELLLLSCTHHNSLSDALNVH 103 (662)
Q Consensus 27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~ 103 (662)
+.+-+..++ +.-...+..... ..+.+...++.|+.+-+.-+++.+..++ ....+ .|...+..|+.+ +.
T Consensus 26 ~~~~v~~Ll-~~g~~~~~~~~~---~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~----~v 96 (437)
T 1n11_A 26 HLPIVKNLL-QRGASPNVSNVK---VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT-PLHCAARIGHTN----MV 96 (437)
T ss_dssp CHHHHHHHH-HTTCCSCCSSSC---CCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC-HHHHHHHHTCHH----HH
T ss_pred CHHHHHHHH-HcCCCCCCCCCC---CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHCCCHH----HH
Confidence 566666666 543333322211 1235666677888887777777444332 22222 333444567765 44
Q ss_pred HHHHHhCCCCChh--HHHHHHHHhhcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCC
Q 006076 104 SHLTDNGFDQDPF--LVTKLINVYSHFDSVDDARHVFDKTRRR---TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178 (662)
Q Consensus 104 ~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g 178 (662)
+.+++.|..++.. .....+...++.|..+.+..+++.-... +..-++. +...+..|+.+ +++.+.+. |
T Consensus 97 ~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~--g 169 (437)
T 1n11_A 97 KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVR----VAELLLER--D 169 (437)
T ss_dssp HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHT--T
T ss_pred HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHH----HHHHHHhC--C
Confidence 4555666554432 1223344455678888888888754332 2222223 33344556654 33344444 4
Q ss_pred CCCChh---hHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHcC
Q 006076 179 IRSDRF---TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI--MTTLIDMYARFGCVMYAGFVFSQM 248 (662)
Q Consensus 179 ~~p~~~---t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~~ 248 (662)
..|+.. ..+.+. ..+..+. .+ +...+++.|..++... ..+.+...++.|+.+-+..+++.-
T Consensus 170 ~~~~~~~~~g~t~L~-~A~~~~~----~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 170 AHPNAAGKNGLTPLH-VAVHHNN----LD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp CCTTCCCSSCCCHHH-HHHHTTC----HH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCHHH-HHHHcCC----HH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 444322 122222 2333344 43 3444455554443211 122344555677777777776643
No 272
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=58.52 E-value=1.3e+02 Score=28.69 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCchHHHHHHhcCCCCCHh----hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 006076 53 NELIQSLCKQGNLRQALDVLSIEPNPTQH----TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ 113 (662)
Q Consensus 53 ~~li~~~~~~g~~~~A~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 113 (662)
++.+-..+++|+.+-...+++.|..+|.. -++. |...+..|+.+ +.+.+++.|..+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~Tp-Lh~A~~~g~~~----iv~~Ll~~ga~~ 85 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSRED----IVELLLRHGADP 85 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCT
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCH-HHHHHHcCCHH----HHHHHHHcCCch
Confidence 44566667888988888888865555422 1223 33344556665 444455566443
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=58.02 E-value=93 Score=26.93 Aligned_cols=141 Identities=11% Similarity=-0.020 Sum_probs=61.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHH
Q 006076 220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299 (662)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a 299 (662)
+|..+....+..+.+.|..+....+.+.+..+|...-...+.++.+.|..+ +...+.++ .. .++...-...+.+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~--l~---d~~~~vr~~a~~a 99 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKA--LK---DEDGWVRQSAAVA 99 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHH--TT---CSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHH--Hc---CCCHHHHHHHHHH
Confidence 344444444555555555444444555555555554444555555555432 33333333 11 2444444445555
Q ss_pred HHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 006076 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG 370 (662)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 370 (662)
+...++.+....+.. +. -.++..+-...+.++.+.|+.+....+...+.+++...-...+.++.+.|
T Consensus 100 L~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 100 LGQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHhCcHHHHHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 555444322222211 11 13344444444555555554333333333333444443334444444443
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.76 E-value=58 Score=32.90 Aligned_cols=95 Identities=8% Similarity=-0.104 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHhHHH--
Q 006076 327 VVSALVTMYARCGKLELGQCVFDHMDK------RDVVSWNSLISSYGVHGYGGKAIQIFKEMIY---HGVSPSPISFV-- 395 (662)
Q Consensus 327 ~~~~li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~-- 395 (662)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-.+|..+...+++..+...+.+... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556788888888888888888887753 2344677778888888888888888877654 22223222111
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhHHhc
Q 006076 396 SVLGACSHAGLVEEGKMLFESMRKEH 421 (662)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~~~ 421 (662)
.-...+...+++..|.+.|-.....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11123345688888888887765544
No 275
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=56.60 E-value=2.1e+02 Score=30.60 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=25.7
Q ss_pred hHHHHHHHHhCCCchHHHHHHhcC---CCCCHhhHHHHHHHHhc
Q 006076 52 KNELIQSLCKQGNLRQALDVLSIE---PNPTQHTYELLLLSCTH 92 (662)
Q Consensus 52 ~~~li~~~~~~g~~~~A~~~~~~~---~~p~~~~~~~ll~~~~~ 92 (662)
--++|--+.|.|.+++|.++.+.. ...-...|...+..++.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 346888899999999999988721 22222466666777663
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.52 E-value=1e+02 Score=27.16 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=68.2
Q ss_pred HHHHHHHHhc-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 006076 444 EEAAKIIEDL-RIEPGPK---VWGSLLGSCRIHCNVELAERASKRLFE--LEPTNAGNYVLLADVYAAADMWDEVKRVKR 517 (662)
Q Consensus 444 ~~A~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 517 (662)
+.+...|... ..+.|+. .|-..+..| ..++...+..+|..+.. ++-.-+..|...+..+...|++++|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444 2344554 344444443 23446788889988875 556667788999999999999999999998
Q ss_pred HHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHHHCCcccC
Q 006076 518 LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQ 574 (662)
Q Consensus 518 ~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~ 574 (662)
.=.+++-+ | .+.+.+...+...+|.+.+++-|
T Consensus 140 ~GI~~~A~------------------------P-~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 140 LGAENNCR------------------------P-YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHHTTCB------------------------S-HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCc------------------------c-HHHHHHHHHHHHHHHHhcCCCCC
Confidence 87776543 2 13333445567778888877333
No 277
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=55.69 E-value=2.6e+02 Score=31.35 Aligned_cols=255 Identities=12% Similarity=0.068 Sum_probs=137.1
Q ss_pred HHhCCCCccchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC-CCC----------HhHHHHH
Q 006076 193 CVASSCGFSLLKHGKEIHASVLRHG--YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA-VKN----------VVSWSAM 259 (662)
Q Consensus 193 ~~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~~----------~~~~~~l 259 (662)
....++ .+++..++...+..+ -.+.......+.-+...+|.-+++..++.... ..+ +..-.++
T Consensus 384 lIh~g~----~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 384 VIHKGN----LLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHTSSC----TTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred hhccCc----hHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 445566 777777665544321 12223344445555666776666766555432 222 1122333
Q ss_pred HHHHHHcCC-hhHHHHHHHHHhhhhCCCcCCHHH--HH--HHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006076 260 IACYARNGM-AFEALELFREMIMESHDLCPNSVT--MV--SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334 (662)
Q Consensus 260 i~~~~~~g~-~~~A~~~~~~m~~~~~~~~p~~~t--~~--~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 334 (662)
.-|++-.|. -+++.+.+..+. ... +..+ .. ++-..+...|+-+....++..+.+.. +..+...+.-+
T Consensus 460 GLGla~~GS~~eev~e~L~~~L--~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalg 531 (963)
T 4ady_A 460 GIGLAAMGSANIEVYEALKEVL--YND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVG 531 (963)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHH--HTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHH--hcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHH
Confidence 334444443 356777777763 221 2111 11 22233456678888888888776532 23334444444
Q ss_pred HH--hcCChHHHHHHHhhCCC-CCh-hHHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCH
Q 006076 335 YA--RCGKLELGQCVFDHMDK-RDV-VSWN---SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV 407 (662)
Q Consensus 335 y~--~~g~~~~A~~~~~~m~~-~~~-~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 407 (662)
++ -.|+.+.+..+.+.+.. .|. +-|. ++..+|+..|+.....+++..+.... ..+......+.-++...|+.
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred HHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence 44 56888888887777652 333 3343 34456778888766666888887631 22222222222244456776
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH-HHHHHHHHhcCCCCCHHHH
Q 006076 408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL-EEAAKIIEDLRIEPGPKVW 462 (662)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~p~~~~~ 462 (662)
+.+.++++.+.+. ..|.+..-.++.-+....|.. .+|.+++..+...+|..+-
T Consensus 611 e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 611 TTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp SSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 6677777766532 245555555555555555543 6778888877545555443
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.74 E-value=91 Score=31.42 Aligned_cols=96 Identities=15% Similarity=0.039 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHH----
Q 006076 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA---- 431 (662)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---- 431 (662)
++..+..-|.+.|+.++|.+.|.++...-..+.. ..+..++..+...+++..+.....++.....-.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 6677889999999999999999999885444433 5677788889999999999999998864322223332221
Q ss_pred HHHHHHhhcCCHHHHHHHHHhc
Q 006076 432 CMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~m 453 (662)
+-.-.+...+++.+|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2223345678999998888765
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.20 E-value=1.3e+02 Score=26.23 Aligned_cols=171 Identities=9% Similarity=-0.023 Sum_probs=110.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHH
Q 006076 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298 (662)
Q Consensus 219 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~ 298 (662)
.++..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|.. ++...+.++ .. .+|...-...+.
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~--l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKA--LK---DEDGWVRQSAAV 103 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHH--TT---CSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHH--Hc---CCCHHHHHHHHH
Confidence 455666666667777777755556666667777777666777777777764 445555554 22 366667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006076 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQI 378 (662)
Q Consensus 299 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 378 (662)
++...++.+....+.. +. -.++..+-...+.++.+.|..+....+...+.+++...-...+.++.+.+. .++...
T Consensus 104 aL~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~ 178 (211)
T 3ltm_A 104 ALGQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAA 178 (211)
T ss_dssp HHHHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHH
T ss_pred HHHHhCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHH
Confidence 8877776543333332 22 356777888888888888887666666666667887777777778887776 466666
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhc
Q 006076 379 FKEMIYHGVSPSPISFVSVLGACSH 403 (662)
Q Consensus 379 ~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (662)
+.++.+. ++...-...+.++..
T Consensus 179 L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 179 MEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHHhC---CCHHHHHHHHHHHHh
Confidence 6666653 344444444444433
No 280
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=49.04 E-value=2.8e+02 Score=29.71 Aligned_cols=21 Identities=5% Similarity=-0.067 Sum_probs=14.6
Q ss_pred HHHhcCCHHHHHHHHHcCCCC
Q 006076 231 MYARFGCVMYAGFVFSQMAVK 251 (662)
Q Consensus 231 ~y~~~g~~~~A~~~f~~~~~~ 251 (662)
-+...|++++|..+|+-..+.
T Consensus 452 ~ae~~G~~~dAi~LY~La~~~ 472 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAEEY 472 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHhcCH
Confidence 455678888888887766543
No 281
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=46.25 E-value=6.5 Score=24.05 Aligned_cols=17 Identities=35% Similarity=0.774 Sum_probs=11.9
Q ss_pred CCccccc-cCcccCCCCC
Q 006076 645 VNRFHHF-RNGVCSCGDY 661 (662)
Q Consensus 645 ~~~~h~f-~~g~csc~~~ 661 (662)
|-.-|.. .+|.||||-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 4444554 7899999976
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=45.12 E-value=1e+02 Score=28.18 Aligned_cols=18 Identities=6% Similarity=-0.237 Sum_probs=8.2
Q ss_pred HHHHhcCCHHHHHHHHHc
Q 006076 230 DMYARFGCVMYAGFVFSQ 247 (662)
Q Consensus 230 ~~y~~~g~~~~A~~~f~~ 247 (662)
...++.|+++....+++.
T Consensus 10 ~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 10 IKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 333444555444444443
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.42 E-value=1.5e+02 Score=30.51 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-------hHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076 392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-------VEHYACMVDLLGRANKLEEAAKIIEDL 453 (662)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (662)
..++.++.-|.+.+.++.|..+..... ++.. ..-+-.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 567788889999999999999998773 2211 112234456677789999998888765
No 284
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.09 E-value=1.3e+02 Score=26.49 Aligned_cols=78 Identities=9% Similarity=0.049 Sum_probs=38.2
Q ss_pred HHHhCCCchHHHHHHhcCCCCCH---hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH---HHHHHHHhhcCCCh
Q 006076 58 SLCKQGNLRQALDVLSIEPNPTQ---HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL---VTKLINVYSHFDSV 131 (662)
Q Consensus 58 ~~~~~g~~~~A~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~y~~~g~~ 131 (662)
..++.|+.+-...+++.+..++. ... +.+...+..|+.+ +.+.+++.|..++... ....+...++.|..
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~ 89 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred HHHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence 35667777777777774433322 212 2334444556654 3344445554332111 22233444455666
Q ss_pred HHHHHHHhc
Q 006076 132 DDARHVFDK 140 (662)
Q Consensus 132 ~~A~~~f~~ 140 (662)
+-+..+++.
T Consensus 90 ~~v~~Ll~~ 98 (240)
T 3eu9_A 90 SMVVQLMKY 98 (240)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 666666654
No 285
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=42.09 E-value=2.4e+02 Score=26.94 Aligned_cols=122 Identities=7% Similarity=-0.013 Sum_probs=72.5
Q ss_pred HhCCCchHHHHHHhc----------CCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCC
Q 006076 60 CKQGNLRQALDVLSI----------EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD 129 (662)
Q Consensus 60 ~~~g~~~~A~~~~~~----------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 129 (662)
...|++++|+..|+. ..+-+..-...++..|. .+-.|..+ ++.+..+..+...-+.=+.+|.-.=
T Consensus 125 ~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icr---EYilal~i--El~Rr~l~~~~~kR~lELAAYFT~c 199 (325)
T 3mv2_A 125 FKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAR---EYILGLSI--ELERRSLKEGNTVRMLELAAYFTKA 199 (325)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHH---HHHHHHHH--HHHHHTCCTTCHHHHHHHHHHGGGS
T ss_pred HhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHhcCcccHHHHHHHHHHhccC
Confidence 679999999999981 11112223344454443 23344433 3333444444445566666666554
Q ss_pred ChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHH
Q 006076 130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209 (662)
Q Consensus 130 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~ 209 (662)
+++-....+ +...-|....+.+++..|..+-+++++. +-.|+. .++|+++
T Consensus 200 ~LQp~H~~L---------aLr~AM~~a~K~KNy~tAa~fArrLLel--~p~~~~-------------------a~qArki 249 (325)
T 3mv2_A 200 KLSPIHRTN---------ALQVAMSQHFKHKNFLQASYFAGEFLKI--ISSGPR-------------------AEQARKI 249 (325)
T ss_dssp CCCHHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSSHH-------------------HHHHHHH
T ss_pred CCcHHHHHH---------HHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCHHH-------------------HHHHHHH
Confidence 444444333 5666777888999999999999999876 322221 6667777
Q ss_pred HHHHHHh
Q 006076 210 HASVLRH 216 (662)
Q Consensus 210 ~~~~~~~ 216 (662)
.....+.
T Consensus 250 l~~ce~~ 256 (325)
T 3mv2_A 250 KNKADSM 256 (325)
T ss_dssp HHHHHTS
T ss_pred HHHHhcC
Confidence 7766654
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.28 E-value=89 Score=27.67 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=9.0
Q ss_pred HHHhhcCCChHHHHHHHhc
Q 006076 122 INVYSHFDSVDDARHVFDK 140 (662)
Q Consensus 122 i~~y~~~g~~~~A~~~f~~ 140 (662)
+...++.|+.+-+..+++.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3334445555555555443
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.05 E-value=1.3e+02 Score=26.75 Aligned_cols=19 Identities=0% Similarity=0.001 Sum_probs=9.7
Q ss_pred HHHHHhcCCHHHHHHHHHc
Q 006076 229 IDMYARFGCVMYAGFVFSQ 247 (662)
Q Consensus 229 i~~y~~~g~~~~A~~~f~~ 247 (662)
+...++.|+.+-+.-+++.
T Consensus 154 L~~A~~~~~~~~v~~Ll~~ 172 (241)
T 1k1a_A 154 LIHAVENNSLSMVQLLLQH 172 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344455555555555544
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.79 E-value=86 Score=25.34 Aligned_cols=63 Identities=8% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCC
Q 006076 328 VSALVTMYARCGKLELGQCVFDHMDKRDV---VSWNSLISSYGVHGY--GGKAIQIFKEMIYHGVSPS 390 (662)
Q Consensus 328 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 390 (662)
.+.++.-|...|+.++|.+.++++..|.. +...++..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45678888889999999999998876632 344555556655442 3556777777777664443
No 289
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=39.51 E-value=1.8e+02 Score=24.80 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=73.0
Q ss_pred HHHHHhCCCchHHHHHHhcCC-C---CCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHhhcCC
Q 006076 56 IQSLCKQGNLRQALDVLSIEP-N---PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL--VTKLINVYSHFD 129 (662)
Q Consensus 56 i~~~~~~g~~~~A~~~~~~~~-~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g 129 (662)
+...+..|+.+....++..+. . +|....+.+.. .+..|+.+ +.+.+++.|..++... ....+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 444466788888888887322 2 23333333333 34456654 4455556665544321 223344445678
Q ss_pred ChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHH
Q 006076 130 SVDDARHVFDKTR----RRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205 (662)
Q Consensus 130 ~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~ 205 (662)
..+-+..+++.-. .+|..-++.+ ...++.|+.+-+..+++.-... --.+|..-.+.+..++..... ...
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~~g~t~L~~A~~~~~~----~~~ 156 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLEDGRED--IDFQNDFGYTALIEAVGLREG----NQL 156 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHHHCCCC--TTCCCTTSCCHHHHHHHSSCC----SHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHHcCCCC--cCCCCCCCCCHHHHHHHhccc----hhh
Confidence 8887777774432 1222222222 2334556654443333332111 011233333444444433322 222
Q ss_pred HHHHHHHHHHhCCCCc
Q 006076 206 GKEIHASVLRHGYNGI 221 (662)
Q Consensus 206 a~~~~~~~~~~g~~~~ 221 (662)
-.++.+.+++.|..++
T Consensus 157 ~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 157 YQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHCCCCCC
Confidence 3566667777776554
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.79 E-value=2.7e+02 Score=31.39 Aligned_cols=90 Identities=7% Similarity=-0.152 Sum_probs=56.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCC-C---------------
Q 006076 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR--IEP-G--------------- 458 (662)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p-~--------------- 458 (662)
++..|...|..+-+.++.... +.++..--.+..+|..+|++++|.+.|++.. +.+ +
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 666777778777666544322 3344443456777888899999999888762 111 0
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC
Q 006076 459 -------PKVWGSLLGSCRIHCNVELAERASKRLFEL-EPTN 492 (662)
Q Consensus 459 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~ 492 (662)
...|.-++..+-.++-++-+..+.+.+++. .++|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd 931 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD 931 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCC
Confidence 124555666667777777777777777753 3443
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.53 E-value=1.8e+02 Score=25.62 Aligned_cols=81 Identities=9% Similarity=-0.057 Sum_probs=43.4
Q ss_pred HHhCCCCccchHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHcCCCC---CHhHHHHHHHHHHHcC
Q 006076 193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVH--IMTTLIDMYARFGCVMYAGFVFSQMAVK---NVVSWSAMIACYARNG 267 (662)
Q Consensus 193 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g 267 (662)
.+..++ .+..+.+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.-..+ |..-++. +...+..|
T Consensus 16 A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~ 90 (241)
T 1k1a_A 16 AVVQGN----LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHR 90 (241)
T ss_dssp HHHTTC----HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTT
T ss_pred HHHcCC----HHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcC
Confidence 344466 777777777666666544421 1223455566678887777777654332 2222222 23334566
Q ss_pred ChhHHHHHHHH
Q 006076 268 MAFEALELFRE 278 (662)
Q Consensus 268 ~~~~A~~~~~~ 278 (662)
+.+-+..+++.
T Consensus 91 ~~~~~~~Ll~~ 101 (241)
T 1k1a_A 91 SPTCLRALLDS 101 (241)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHc
Confidence 66555555543
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.51 E-value=1.3e+02 Score=27.22 Aligned_cols=21 Identities=14% Similarity=-0.064 Sum_probs=13.3
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 006076 259 MIACYARNGMAFEALELFREM 279 (662)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m 279 (662)
-+..+....++++|++++++.
T Consensus 24 eLDv~IA~r~feeAv~lle~~ 44 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDI 44 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 345566666777777766655
No 293
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=36.44 E-value=2.2e+02 Score=25.00 Aligned_cols=47 Identities=4% Similarity=0.146 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 006076 306 LEQGKMIHGYILRRGLDSI-LPVVSALVTMYARCGKLELGQCVFDHMD 352 (662)
Q Consensus 306 ~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~ 352 (662)
......+|..|...|+-.. ...|......+-..|++.+|.++|+.-.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI 142 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGA 142 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666655433 3455555556666666666666666444
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.00 E-value=2e+02 Score=24.00 Aligned_cols=48 Identities=10% Similarity=-0.003 Sum_probs=37.0
Q ss_pred HHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 477 LAERASKRLFE--LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 477 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
.+..+|+.+.. ++-..+..|...+..+...|++++|.++++.=.+++-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 37778888775 4455567788888889999999999999987776654
No 295
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=34.85 E-value=2.2e+02 Score=24.41 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHccCC
Q 006076 289 NSVTMVSVLQACAALAA 305 (662)
Q Consensus 289 ~~~t~~~ll~a~~~~~~ 305 (662)
+...-...+.++...+.
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33444444444444443
No 296
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.47 E-value=78 Score=30.19 Aligned_cols=68 Identities=9% Similarity=0.080 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHhCCCCchh
Q 006076 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA--LEQGKMIHGYILRRGLDSILP 326 (662)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~ 326 (662)
.+.++.-|...|+.++|.+.++++ ......| ......+..+.-+.++ .+...+++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL--~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKEL--EVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--CCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--CCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 567888899999999999999988 4322222 2333344444444322 355566677776666544433
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.72 E-value=1e+02 Score=28.05 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=15.9
Q ss_pred HHHHHHhCCCchHHHHHHh
Q 006076 55 LIQSLCKQGNLRQALDVLS 73 (662)
Q Consensus 55 li~~~~~~g~~~~A~~~~~ 73 (662)
-++.+..+.++++|+++++
T Consensus 24 eLDv~IA~r~feeAv~lle 42 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLL 42 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 5778888889999988887
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.22 E-value=81 Score=26.39 Aligned_cols=62 Identities=8% Similarity=0.200 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 006076 328 VSALVTMYARCGKLELGQCVFDHMDKRD---VVSWNSLISSYGVHGY--GGKAIQIFKEMIYHGVSP 389 (662)
Q Consensus 328 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 389 (662)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567888888999999999999887663 2344555556655332 345667777777666443
No 299
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=32.12 E-value=9.1 Score=20.19 Aligned_cols=14 Identities=50% Similarity=1.443 Sum_probs=9.7
Q ss_pred ccccCccc--CCCCCC
Q 006076 649 HHFRNGVC--SCGDYW 662 (662)
Q Consensus 649 h~f~~g~c--sc~~~~ 662 (662)
-+|.+|.| .|++-|
T Consensus 7 v~fgngfcgdncgnsw 22 (27)
T 2hgo_A 7 VNFGNGFCGDNCGNSW 22 (27)
T ss_dssp EEETTTEEECSSSCEE
T ss_pred EeecCccccCCcCCcc
Confidence 36788888 576665
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.60 E-value=1.2e+02 Score=28.10 Aligned_cols=88 Identities=6% Similarity=-0.076 Sum_probs=43.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHH
Q 006076 433 MVDLLGRANKLEEAAKIIEDLRIEPGP-KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE 511 (662)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (662)
.+...+..|+.+-+..+++.-....+. .-+ +.+...+..|+.+....+++.-...+..+..-.......-...|..
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~-- 208 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILL-SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI-- 208 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCTTCCCSTHH-HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH--
T ss_pred HHHHHHHcCCHHHHHHHHhCCCccccccCCc-cHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH--
Confidence 344445567766666565554322222 223 3344445678888887777776554433222111111222334554
Q ss_pred HHHHHHHHHhCCCc
Q 006076 512 VKRVKRLLEARGLQ 525 (662)
Q Consensus 512 A~~~~~~m~~~~~~ 525 (662)
++.+.+.+.|..
T Consensus 209 --~~v~~Ll~~gad 220 (285)
T 3kea_A 209 --EMLQALFKYDIN 220 (285)
T ss_dssp --HHHHHHTTSCBC
T ss_pred --HHHHHHHHcCCC
Confidence 345555666654
No 301
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.90 E-value=42 Score=25.56 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHH
Q 006076 101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167 (662)
Q Consensus 101 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 167 (662)
.++..+.+.|+- +..-...+ .........+.|.++++.++.++..+|..++.++...|+..-|..
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I-~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDI-QRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHH-HTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHH-HhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 356666666642 22222211 111012578999999999999999999999999987777655543
No 302
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=29.10 E-value=96 Score=30.03 Aligned_cols=41 Identities=10% Similarity=0.017 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHcC
Q 006076 208 EIHASVLRHGYNGIVHI--MTTLIDMYARFGCVMYAGFVFSQM 248 (662)
Q Consensus 208 ~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~~ 248 (662)
++.+.+++.|..++... ..+.+...+..|+.+-+..+++.-
T Consensus 154 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 154 EMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTV 196 (364)
T ss_dssp HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 34445555565544211 123344455667777777777653
No 303
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=28.63 E-value=18 Score=25.24 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=17.4
Q ss_pred ceEEEecCCccccccCcccCC
Q 006076 638 KEILVRDVNRFHHFRNGVCSC 658 (662)
Q Consensus 638 ~~~~~~d~~~~h~f~~g~csc 658 (662)
..|=+.|....|+|+||+-+-
T Consensus 8 k~v~LkDGstvyiFKDGKMam 28 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGM 28 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEE
T ss_pred eeEecCCCcEEEEEcCCceeh
Confidence 457789999999999998653
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.58 E-value=2.3e+02 Score=22.73 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCCCC---HhHHHHHHHHHHHcCC--hhHHHHHHHHHhhhhCCCcC
Q 006076 225 MTTLIDMYARFGCVMYAGFVFSQMAVKN---VVSWSAMIACYARNGM--AFEALELFREMIMESHDLCP 288 (662)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~p 288 (662)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+ ...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L--~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL--WKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH--HHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--HHCCCcC
Confidence 4567788888899999999999887662 2344445555555432 34566777777 5555433
No 305
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.35 E-value=1.2e+02 Score=26.84 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=13.4
Q ss_pred HHHHHHhCCCchHHHHHHhcCCC
Q 006076 55 LIQSLCKQGNLRQALDVLSIEPN 77 (662)
Q Consensus 55 li~~~~~~g~~~~A~~~~~~~~~ 77 (662)
.+...++.|+.+-...+++.+..
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~g~~ 36 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQAGAN 36 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHcCcHHHHHHHHHcCCC
Confidence 45555666777666666664433
No 306
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.27 E-value=1.5e+02 Score=28.56 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=40.1
Q ss_pred CChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHcCCCCCH-hHHH
Q 006076 181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH--IMTTLIDMYARFGCVMYAGFVFSQMAVKNV-VSWS 257 (662)
Q Consensus 181 p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~ 257 (662)
.|..-.+.+..++ ..++ .+.. +.+++.|..++.. ...+.+...+..|+.+-+.-+++.-...+. .-++
T Consensus 16 ~d~~g~t~L~~Aa-~~g~----~~~v----~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKIHVAA-RKGQ----TDEV----RRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHHHHHHHH-HHTC----HHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBC
T ss_pred cCCCCCCHHHHHH-HcCC----HHHH----HHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCC
Confidence 3444455555444 3344 4433 3344555444321 112334455566777766666665443322 1122
Q ss_pred HHHHHHHHcCChhHHHHHHHH
Q 006076 258 AMIACYARNGMAFEALELFRE 278 (662)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~ 278 (662)
.+...+..|+.+-+..+++.
T Consensus 87 -~L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 87 -PIHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp -HHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHcCCHHHHHHHHHh
Confidence 22233455665555555544
No 307
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=28.19 E-value=1.7e+02 Score=27.01 Aligned_cols=10 Identities=30% Similarity=0.255 Sum_probs=4.6
Q ss_pred CchHHHHHHh
Q 006076 64 NLRQALDVLS 73 (662)
Q Consensus 64 ~~~~A~~~~~ 73 (662)
+.++..+++.
T Consensus 11 ~~~~v~~lL~ 20 (285)
T 3kea_A 11 KSKQLKSFLS 20 (285)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3444444444
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.08 E-value=1.6e+02 Score=24.51 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHH
Q 006076 257 SAMIACYARNGMAFEALELFREM 279 (662)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~m 279 (662)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34445555555555555555554
No 309
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.88 E-value=1.7e+02 Score=30.18 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=39.2
Q ss_pred ChHHHHHHHHhCCCchHHHHHHhcCCCC-CH------hhHHH-HHHHHhcCCChHHHHHHHHHHHHh
Q 006076 51 NKNELIQSLCKQGNLRQALDVLSIEPNP-TQ------HTYEL-LLLSCTHHNSLSDALNVHSHLTDN 109 (662)
Q Consensus 51 ~~~~li~~~~~~g~~~~A~~~~~~~~~p-~~------~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~ 109 (662)
.+|.++..|...+.+++|..+.....-| +. .+|.. +.....-.+++.+|.+.+....+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4788889999999999999888822222 11 22221 234556678888888887777654
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.61 E-value=2.8e+02 Score=23.43 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=37.1
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076 478 AERASKRLFE--LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL 524 (662)
Q Consensus 478 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 524 (662)
...+|..+.. ++-.-+..|...+..+...|++.+|.++++.-.+++-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 6667777765 4455677888899999999999999999988777654
No 311
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=27.48 E-value=5.7e+02 Score=27.00 Aligned_cols=418 Identities=11% Similarity=-0.016 Sum_probs=206.6
Q ss_pred HHhCCCchHHHHHHhc--CCC-CCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCChhHHHHHHHHhhcCCChHHH
Q 006076 59 LCKQGNLRQALDVLSI--EPN-PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG-FDQDPFLVTKLINVYSHFDSVDDA 134 (662)
Q Consensus 59 ~~~~g~~~~A~~~~~~--~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A 134 (662)
..+.|++..+..+... +.+ ..-..|..+..... ..... ++-..+.+.. .+.....-+.-+..+.+.+++...
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~-~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLM-NQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGG-GCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcc-cCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 3456788877777652 111 12223433333221 12334 4444444432 222234455667777888899998
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHH--HHHHHHH
Q 006076 135 RHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH--GKEIHAS 212 (662)
Q Consensus 135 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~--a~~~~~~ 212 (662)
..++.. +..+...-.....+....|+..+|......+-..+ .. .......++......+. +.. ..+=+..
T Consensus 92 l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~--~p~~c~~l~~~~~~~g~----lt~~~~~~R~~~ 163 (618)
T 1qsa_A 92 LAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KS--QPNACDKLFSVWRASGK----QDPLAYLERIRL 163 (618)
T ss_dssp HHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SC--CCTHHHHHHHHHHHTTC----SCHHHHHHHHHH
T ss_pred HHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CC--CcHHHHHHHHHHHHCCC----CCHHHHHHHHHH
Confidence 887776 44455555556677778898888888777776552 22 33456666766665443 211 1111111
Q ss_pred HHHhC-----------CCCch-hHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHh---HHHHHHHHHHHcCChhHHHHHHH
Q 006076 213 VLRHG-----------YNGIV-HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV---SWSAMIACYARNGMAFEALELFR 277 (662)
Q Consensus 213 ~~~~g-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~ 277 (662)
+...| ++++. .....++..+.+ ...+........ ++.. .+..-+.-+.+. +.+.|..+|.
T Consensus 164 al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar~-d~~~A~~~~~ 238 (618)
T 1qsa_A 164 AMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVARQ-DAENARLMIP 238 (618)
T ss_dssp HHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHHH-CHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 22111 11111 111222222221 112222222211 1111 111123333333 7788988888
Q ss_pred HHhhhhCCCcCCHHHHHHHHHH----HHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006076 278 EMIMESHDLCPNSVTMVSVLQA----CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK 353 (662)
Q Consensus 278 ~m~~~~~~~~p~~~t~~~ll~a----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 353 (662)
.. .... ..+......+-.. ....+...++...+....... .+.....-.+....+.|+++.|...|+.|..
T Consensus 239 ~~--~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~ 313 (618)
T 1qsa_A 239 SL--AQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPM 313 (618)
T ss_dssp HH--HHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT
T ss_pred hh--hhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccc
Confidence 77 3322 2233332222222 233342445555555544332 3333344455555678999999999999975
Q ss_pred CC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC---h
Q 006076 354 RD---VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS---V 427 (662)
Q Consensus 354 ~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~ 427 (662)
.. ....-=+..++...|+.++|..+|..+.. + .+|-.++.+ .+.|..-. . ....+.+. .
T Consensus 314 ~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~--~~fYg~lAa-~~Lg~~~~-------~-~~~~~~~~~~~~ 378 (618)
T 1qsa_A 314 EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----Q--RGFYPMVAA-QRIGEEYE-------L-KIDKAPQNVDSA 378 (618)
T ss_dssp TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----S--CSHHHHHHH-HHTTCCCC-------C-CCCCCCSCCCCH
T ss_pred cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----C--CChHHHHHH-HHcCCCCC-------C-CCCCCChhHHhh
Confidence 32 22222345567788999999999998864 2 134444422 23332100 0 00000110 0
Q ss_pred -H--HHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCcchHHHHHH
Q 006076 428 -E--HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP---TNAGNYVLLAD 501 (662)
Q Consensus 428 -~--~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~ 501 (662)
. .-..-+..+...|...+|...+....-..+......+.......|..+.+.....+....+. .-|..|..++.
T Consensus 379 ~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~ 458 (618)
T 1qsa_A 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFK 458 (618)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHH
T ss_pred hccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHH
Confidence 0 11223456778899999988777652233443334444445667788877766544322210 01234566666
Q ss_pred HHHhcCChHHHH
Q 006076 502 VYAAADMWDEVK 513 (662)
Q Consensus 502 ~~~~~g~~~~A~ 513 (662)
-+++.-.++.+.
T Consensus 459 ~~a~~~gv~~~l 470 (618)
T 1qsa_A 459 RYTSGKEIPQSY 470 (618)
T ss_dssp HHHTTSSSCHHH
T ss_pred HHHHHcCCCHHH
Confidence 666655555543
No 312
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.78 E-value=2.7e+02 Score=24.27 Aligned_cols=82 Identities=9% Similarity=-0.012 Sum_probs=39.6
Q ss_pred HHHHHHhCCCchHHHHHHhc-CCCC---CHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--------ChhHHHHHH
Q 006076 55 LIQSLCKQGNLRQALDVLSI-EPNP---TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ--------DPFLVTKLI 122 (662)
Q Consensus 55 li~~~~~~g~~~~A~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--------~~~~~~~li 122 (662)
.+...++.|+.+-...+++. +..+ |..-.+.+ ...+..|+.+-++.+++ .|..+ |..-. ..+
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~g~-t~L 79 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL-HIAALYDNLEAAMVLME----AAPELVFEPMTSELYEGQ-TAL 79 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHH----HCGGGGGCCCCSTTTTTC-CHH
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHH-HHHHHcCCHHHHHHHHH----cCchhccccccccCCCCc-CHH
Confidence 45555677777777777763 4333 22223333 33344566654444443 33211 11122 233
Q ss_pred HHhhcCCChHHHHHHHhcCC
Q 006076 123 NVYSHFDSVDDARHVFDKTR 142 (662)
Q Consensus 123 ~~y~~~g~~~~A~~~f~~~~ 142 (662)
...+..|..+-+..+++.-.
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~ 99 (232)
T 2rfa_A 80 HIAVINQNVNLVRALLARGA 99 (232)
T ss_dssp HHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCC
Confidence 34445677776666666533
No 313
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=26.66 E-value=1.6e+02 Score=25.10 Aligned_cols=16 Identities=6% Similarity=0.275 Sum_probs=8.9
Q ss_pred hcCCChHHHHHHHhcC
Q 006076 126 SHFDSVDDARHVFDKT 141 (662)
Q Consensus 126 ~~~g~~~~A~~~f~~~ 141 (662)
+..|+.+....+++.-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 3456666666666543
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.14 E-value=6.1e+02 Score=28.51 Aligned_cols=126 Identities=10% Similarity=-0.013 Sum_probs=69.8
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHH
Q 006076 228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307 (662)
Q Consensus 228 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~ 307 (662)
++.-+...|..+-|..+....+. +...--.+..+|...|++++|...|++. ..|+.++....... +
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA---A~gl~~~~~~~~~~----------~ 881 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT---SLVLYSHTSQFAVL----------R 881 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC---CCTTCSSCCSCGGG----------H
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH---hhhcccCcccccch----------h
Confidence 66677778888888877766664 4444345677899999999999999876 34443322110000 0
Q ss_pred HHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCChHHHHHHHh----hCCCCCh----hHHHHHHHHHHhcC
Q 006076 308 QGKMIHGYILRRGL-DSILPVVSALVTMYARCGKLELGQCVFD----HMDKRDV----VSWNSLISSYGVHG 370 (662)
Q Consensus 308 ~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~----~m~~~~~----~~~~~li~~~~~~g 370 (662)
....++. .... .....-|..++..+-+.+.++.+.++-+ .+...|. ..|+.+..+.+..|
T Consensus 882 ~~~~ll~---~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 882 EFQEIAE---KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHH---HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccC---cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0000000 0000 1112356677777777777776655433 3332232 25666666655443
No 315
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.93 E-value=3.8e+02 Score=24.37 Aligned_cols=48 Identities=6% Similarity=-0.143 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCC
Q 006076 221 IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM 268 (662)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 268 (662)
+..+-..-+..+.+.|..+....+.+.+..++...-...+.++.+.|.
T Consensus 36 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp SHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 333333344444444443333334444444554444444455555553
No 316
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.20 E-value=2.2e+02 Score=25.04 Aligned_cols=103 Identities=14% Similarity=0.019 Sum_probs=47.2
Q ss_pred HHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHcCCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHhhhh
Q 006076 209 IHASVLRHGYNGIVH--IMTTLIDMYARFGCVMYAGFVFSQMAVKN---VVSWSAMIACYARNGMAFEALELFREMIMES 283 (662)
Q Consensus 209 ~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 283 (662)
+.+.+++.|..++.. ...+.+...++.|+.+-+.-+++.-...+ ..-++ .+...++.|+.+-+.-++ .
T Consensus 126 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll------~ 198 (237)
T 3b7b_A 126 LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS-PLHIAARENRYDCVVLFL------S 198 (237)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH------T
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHhCCHhHHHHHH------H
Confidence 344445555444321 11233444556677776666665543322 11122 233334556554333332 2
Q ss_pred CCCcCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006076 284 HDLCPNSV--TMVSVLQACAALAALEQGKMIHGYILR 318 (662)
Q Consensus 284 ~~~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~ 318 (662)
.|..++.. .-.+.+......++.+.+.++.+.+.+
T Consensus 199 ~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 199 RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp TTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 23333211 112334444566777777777776654
No 317
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.73 E-value=2.2e+02 Score=24.99 Aligned_cols=26 Identities=8% Similarity=-0.093 Sum_probs=16.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCC
Q 006076 297 LQACAALAALEQGKMIHGYILRRGLD 322 (662)
Q Consensus 297 l~a~~~~~~~~~a~~~~~~~~~~g~~ 322 (662)
+...+..++.+.+..+.+.+.+.|..
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 34445566777666666777666643
No 318
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=23.26 E-value=22 Score=21.96 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=10.3
Q ss_pred cccccCCCcchhh
Q 006076 618 NLRLCEDCHSFTK 630 (662)
Q Consensus 618 ~l~~c~~~~~~~~ 630 (662)
+.|+|.+|+.-+.
T Consensus 16 ~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 16 QYRVCEKCGKPLA 28 (44)
T ss_dssp CEEECTTTCCEEE
T ss_pred cchhhcccCCcch
Confidence 6899999986543
No 319
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=22.39 E-value=3.4e+02 Score=22.58 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhCCCcCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 006076 271 EALELFREMIMESHDLCPN-SVTMVSVLQACAALAALEQGKMIHGYILRRGLDS 323 (662)
Q Consensus 271 ~A~~~~~~m~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 323 (662)
++.++|..| ...|+--. ..-|......+...|++.+|.+++..-++.+-.|
T Consensus 83 dp~~if~~L--~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFL--YNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHH--HTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHH--HHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355556555 33333222 2233333444445555555555555555554444
No 320
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.10 E-value=1.5e+02 Score=22.12 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHH
Q 006076 99 ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165 (662)
Q Consensus 99 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 165 (662)
...++..+.+.|+-. ..-+..+- +.....+.|.++++.++.++..+|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vlt-~~~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLT-ISEEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSC-HHHHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 346777777777432 22222222 2357889999999999999999999999999887764433
No 321
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.78 E-value=1.2e+02 Score=23.06 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=27.7
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 006076 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKA 375 (662)
Q Consensus 339 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 375 (662)
...+.|.++++.+++++..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4577788888888888888888888888766665444
No 322
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.78 E-value=2.8e+02 Score=27.37 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=39.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHH
Q 006076 492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565 (662)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 565 (662)
....|..++..|.+.+++.||.+.+-....- +..+.-..+-+|||.++.++-.+
T Consensus 317 HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V--------------------i~~YNY~reDeEIYKEf~eIAne 370 (550)
T 3u84_A 317 HIYPYMYLAGYHCRNRNVREALQAWADTATV--------------------IQDYNYCREDEEIYKEFFEVAND 370 (550)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------HTTSCCCGGGHHHHHHHHHHHHT
T ss_pred CccceeecchhhhhcchHHHHHHHHHHHHHH--------------------HHHcCCCcchHHHHHHHHHHHHH
Confidence 4678899999999999999999998876541 22333445678899887765544
No 323
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.39 E-value=5.3e+02 Score=24.48 Aligned_cols=123 Identities=9% Similarity=0.115 Sum_probs=70.3
Q ss_pred HhCCCchHHHHHHhc-------CC---CCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHhh
Q 006076 60 CKQGNLRQALDVLSI-------EP---NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ---DPFLVTKLINVYS 126 (662)
Q Consensus 60 ~~~g~~~~A~~~~~~-------~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~ 126 (662)
...|++++|+..|+. -. +-+..-...++..|. .+-.|..+ ++.+..+.. +...-+.=+.+|.
T Consensus 113 ~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icr---eYilal~i--El~Rr~l~~~~~~~~kR~lELAAYF 187 (320)
T 3mkr_B 113 TTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICR---EYIVGLSM--ETERKKLPKETLEQQKRICEMAAYF 187 (320)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHH---HHHHHHHH--HHHHTTSCCCSHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHhcccCCchhHHHHHHHHHHh
Confidence 679999999999981 01 111222333444443 23333333 333333322 3334555566665
Q ss_pred cCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHH
Q 006076 127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG 206 (662)
Q Consensus 127 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a 206 (662)
-.=+++-....+ +...-|....+.+++..|..+-+++++. + |+.. ..++|
T Consensus 188 T~c~Lqp~H~~L---------aLr~AM~~a~K~KNy~tAa~fArrLLel--~--p~~~-----------------~~~qA 237 (320)
T 3mkr_B 188 THSNLQPVHMIL---------VLRTALNLFFKLKNFRTAAAFARRLLEL--G--PKPE-----------------VAQQT 237 (320)
T ss_dssp TTSCCCHHHHHH---------HHHHHHHHHHHTTBHHHHHHHHHHHHHT--C--CCHH-----------------HHHHH
T ss_pred ccCCCcHHHHHH---------HHHHHHHHHHHhhhHHHHHHHHHHHHhc--C--CCHH-----------------HHHHH
Confidence 554444444333 5666777788899999999999999876 3 3211 16667
Q ss_pred HHHHHHHHHhC
Q 006076 207 KEIHASVLRHG 217 (662)
Q Consensus 207 ~~~~~~~~~~g 217 (662)
++++....+.+
T Consensus 238 rkil~~ce~~~ 248 (320)
T 3mkr_B 238 RKILSACEKNP 248 (320)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHhcCC
Confidence 77777776653
No 324
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=21.22 E-value=4.6e+02 Score=23.72 Aligned_cols=21 Identities=10% Similarity=-0.228 Sum_probs=8.9
Q ss_pred CCCCCHhHHHHHHHHHHHcCC
Q 006076 248 MAVKNVVSWSAMIACYARNGM 268 (662)
Q Consensus 248 ~~~~~~~~~~~li~~~~~~g~ 268 (662)
+..++...-...+.++.+.|+
T Consensus 137 l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 137 AFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp TTCSCHHHHHHHHHHHHTC--
T ss_pred hhCCCHHHHHHHHHHHHhcCC
Confidence 344454444444445555444
No 325
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.81 E-value=1.4e+02 Score=27.02 Aligned_cols=88 Identities=9% Similarity=-0.013 Sum_probs=45.1
Q ss_pred HHHHHHhCCCchHHHHHHh----cCCCCCH-------hhHHHHHHHHh--cCCChHHHHHHHHHHHHhC---------CC
Q 006076 55 LIQSLCKQGNLRQALDVLS----IEPNPTQ-------HTYELLLLSCT--HHNSLSDALNVHSHLTDNG---------FD 112 (662)
Q Consensus 55 li~~~~~~g~~~~A~~~~~----~~~~p~~-------~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~ 112 (662)
.+...++.|+.+....+++ .+..++. .-.+.|..++. +.|+.+-++.+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 3445556777776544444 3333332 22334444332 5677777776666543311 11
Q ss_pred -CChhHHHHHHHHhhcCCChHHHHHHHhcCCC
Q 006076 113 -QDPFLVTKLINVYSHFDSVDDARHVFDKTRR 143 (662)
Q Consensus 113 -~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 143 (662)
.|.. ..+.+..-+..|..+-+..+++.-..
T Consensus 88 ~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 88 DVYYR-GQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp CSSEE-SBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccC-CCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 1112 22334445567888888888775443
No 326
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=20.76 E-value=47 Score=24.72 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHHHHHHHCCcccCCccc
Q 006076 550 PQFEQLHALLINLSAEMKEKGYVPQTKVV 578 (662)
Q Consensus 550 ~~~~~~~~~~~~l~~~m~~~g~~p~~~~~ 578 (662)
+...+|...+++-.++++..|+.||...+
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 44566777788889999999999997654
No 327
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.58 E-value=5.4e+02 Score=24.26 Aligned_cols=55 Identities=9% Similarity=0.079 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCCCCH--hHHHHHHHHHHHcCC--hhHHHHHHHHH
Q 006076 225 MTTLIDMYARFGCVMYAGFVFSQMAVKNV--VSWSAMIACYARNGM--AFEALELFREM 279 (662)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m 279 (662)
..+++.-|...|+.++|...++++..|.- ..-..+|......++ -+.+-.++..+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L 64 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDL 64 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 46788889999999999999999976641 122233333333333 23345566776
No 328
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.48 E-value=4.3e+02 Score=23.08 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076 443 LEEAAKIIEDLRIEPGPK-------VWGSLLGSCRIHCNVELAERASKRLFELEPTNA 493 (662)
Q Consensus 443 ~~~A~~~~~~m~~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (662)
++.|+.+++.+.-+-|.. .=...+..|.+.|.+++|.+++++..+..|++.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~ 151 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHM 151 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCch
Confidence 455666666664222211 111234568888888888888888877665543
No 329
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.24 E-value=2.7e+02 Score=20.61 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHH
Q 006076 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEA 272 (662)
Q Consensus 206 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 272 (662)
...++..+.+.|+-.+...- .+ -......+.|.++++.++.++..++..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vlt~~~~e-~I---~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEE-KV---RNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHH-HH---HTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHH-HH---HcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 34566666666643322211 11 12356788899999999999999999999998887764433
No 330
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.15 E-value=2.1e+02 Score=25.08 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=5.6
Q ss_pred cCCChHHHHHHHh
Q 006076 127 HFDSVDDARHVFD 139 (662)
Q Consensus 127 ~~g~~~~A~~~f~ 139 (662)
+.|+++....+++
T Consensus 15 ~~g~~~~v~~ll~ 27 (231)
T 3aji_A 15 YSGKLDELKERIL 27 (231)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 3444444444443
Done!