Query 006084
Match_columns 662
No_of_seqs 255 out of 861
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 18:07:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2001 Gamma-tubulin complex, 100.0 2E-113 4E-118 907.7 56.9 608 3-618 34-662 (734)
2 PF04130 Spc97_Spc98: Spc97 / 100.0 2.2E-68 4.9E-73 604.0 46.7 505 60-586 1-542 (542)
3 KOG2065 Gamma-tubulin ring com 100.0 1.4E-65 3.1E-70 519.8 41.6 537 57-611 1-611 (679)
4 KOG2000 Gamma-tubulin complex, 100.0 5.7E-54 1.2E-58 480.9 34.1 520 51-614 201-763 (879)
5 KOG4344 Uncharacterized conser 100.0 6.2E-26 1.3E-30 238.2 31.7 549 51-615 289-1051(1121)
6 PF14609 GCP5-Mod21: gamma-Tub 49.5 2.2E+02 0.0047 31.5 11.6 64 51-128 179-246 (653)
7 KOG4344 Uncharacterized conser 31.1 27 0.00059 39.2 1.7 125 135-261 451-581 (1121)
8 PLN00032 DNA-directed RNA poly 29.1 68 0.0015 25.5 3.1 50 546-596 10-59 (71)
9 COG5415 Predicted integral mem 22.4 4.7E+02 0.01 25.5 8.0 85 149-245 11-95 (251)
10 KOG2000 Gamma-tubulin complex, 22.2 1.4E+02 0.003 35.9 5.4 120 459-587 589-710 (879)
11 PF08673 RsbU_N: Phosphoserine 22.0 2.6E+02 0.0055 22.8 5.4 45 560-607 30-74 (77)
12 PF10334 DUF2421: Protein of u 20.9 7.5E+02 0.016 24.4 9.9 24 106-129 13-36 (229)
No 1
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=100.00 E-value=1.7e-113 Score=907.65 Aligned_cols=608 Identities=45% Similarity=0.745 Sum_probs=546.0
Q ss_pred CCCCCCCCCcccCCCc-CC-ccccchhh-----hhh-hccc-cccCcccccCCCCCccchHHHHHHHHHHHhcCCCCCce
Q 006084 3 MSYPSTPRWNIERPFL-TG-RFHQETKA-----ASR-FADS-FSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYI 73 (662)
Q Consensus 3 ~~~p~~p~w~~~rp~~-~~-~~~~~~~~-----~~~-~~~~-~~~~~~~~~~~~~~~~~qE~~lv~dlL~aL~G~~g~~i 73 (662)
++.|..|.|...||++ || .+++.... .+. ...+ ..+.....+++.+|.+.||..+++|+|+||.|++|+|+
T Consensus 34 i~~~~~s~~~~~rp~~~tG~~~~~s~~~~l~~~~s~r~~~~~~~~~~~~~~is~~~lp~QE~~li~dLl~af~Gv~~ryV 113 (734)
T KOG2001|consen 34 INPKEESELEEKRPALDTGSVQHQSLVSDLVNLLSKRILEGVGIDYFTDYEISDMPLPSQESKLIDDLLYAFVGVEGRYV 113 (734)
T ss_pred cCccccccccccCcCCCcCccchhhhhhccccchhhhhhhccccccccccCcccCCchhHHHHHHHHHHHHHcCCCccee
Confidence 5677889999999999 77 33333221 111 1111 23556677899999999999999999999999999999
Q ss_pred eeecccccCCCCCC---CCCccceEecCCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 006084 74 SIKRRVNHVHGNDT---YDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLD 150 (662)
Q Consensus 74 ~~~~~~~~~~~~~~---~~~~~~f~v~~~l~~sl~~l~~~il~lg~~~~~l~~fi~~~~~~~~g~v~~Al~~al~~~L~~ 150 (662)
++.. ..+... ......|.|.|+++-++++++++++|+|.+|..+++||+..+.+.+|.|++|+|+|++++|.+
T Consensus 114 ~~Q~----~~~s~~~~~~~~~~~F~v~~~fd~~ir~la~eilpl~~yy~~v~~fie~~s~f~~G~vn~alaaAlr~ll~d 189 (734)
T KOG2001|consen 114 SPQY----MIISEAYEKWIDSIFFMVLPRFDLAIRELAEEILPLASYYLLVQDFIEETSFFEYGQVNHALAAALRELLYD 189 (734)
T ss_pred ecch----hhhhhhhhhhccCcceeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHH
Confidence 9865 212111 013578999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHhhhhhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006084 151 YEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQC 230 (662)
Q Consensus 151 y~~~v~~lE~~~~~~~lsL~~L~~~~~~~~~~L~~L~~i~~~~~~~~~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~ 230 (662)
|+..|.++|++.+.+.+||++||+|++|++..|+.|+..++.+..+.++||.+|+.|++++..+.||+.++.++.+|++.
T Consensus 190 yy~li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~ 269 (734)
T KOG2001|consen 190 YYELISQLEQELRTNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRN 269 (734)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhceecCCCCcceeeecccccccccccchhhhhhcccccc-ccCCchhhHHHHHHHHhhhhHHHHHH
Q 006084 231 ASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMR 309 (662)
Q Consensus 231 ~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~~~~~~~l~~~~~~~~W~~~y~l-~~~vP~Fl~~~a~kIl~~GK~l~vLr 309 (662)
+++||++|++.|++.|.++|||+||||.++ ...++.+++|+.++||++||+| +|.+|.|+.+.|+|||.||||+||+|
T Consensus 270 as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~-~~~k~~l~ed~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvR 348 (734)
T KOG2001|consen 270 ASQPYCTMLEEWIYQGIINDPYQEFMIYDN-LITKEDLPEDYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVR 348 (734)
T ss_pred hcchHHHHHHHHHhcccccCchHhHhhhhc-chhhhcCchhhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999999999999999 7778889999999999999999 68999999999999999999999999
Q ss_pred hhCCCCCCCCcccccccc--cCCccchHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 006084 310 ECGHSAQVPTSENSKLLS--FGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIARE 387 (662)
Q Consensus 310 ~~~~~~~~p~~e~~~~~~--f~~~~~~~~~I~~~~~~as~~Ll~ll~~~~~L~~~L~~l~~~fLL~~Gdf~~~f~d~~~~ 387 (662)
+||+.+++|.+.+. +.. ...+..+.+.|+++|.+|+..++++|+++++|.+||+++|+||||++|||+.+|||.+.+
T Consensus 349 eC~~~v~~p~~~n~-~~~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~e 427 (734)
T KOG2001|consen 349 ECGKIVTIPQSSNE-INDPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEE 427 (734)
T ss_pred HhCccCCCCcchhh-hccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 99999988876532 222 223578999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCcccCHHHHHHHHHHHHH-hhhccCCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCC---CCCccee
Q 006084 388 ELMKQLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQP---VSITGLE 463 (662)
Q Consensus 388 ~L~k~~~~~~~~~L~sll~~alr-~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~s~~~~~~---~~~~~~d 463 (662)
||.|+.+.+++.+|+++|+.|+| .|.+..||++++|+|+++++++..++..+..++....+ ++...+| ..++|+|
T Consensus 428 EL~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~-ans~~dP~~~l~lsGlE 506 (734)
T KOG2001|consen 428 ELTKNVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHILAIEPEEES-ANSQADPLEHLDLSGLE 506 (734)
T ss_pred HHhcchhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHHHhcCccccc-cccccCcchhccccchh
Confidence 99999999999999999999999 78888999999999999999999999887665532211 1122333 5789999
Q ss_pred eEEeeeecCCcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcC-chhHHHHHHHHHHHHHHHHHHH
Q 006084 464 TFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNAS-GTAISRSSLLCRSMLKFINSLL 542 (662)
Q Consensus 464 ~~~L~Y~v~wPLslIlt~~~l~~Y~~IFr~Ll~lk~ve~~L~~~w~~~~~~r~~~~~-~~~~~~~~~Lr~~m~~Fv~~l~ 542 (662)
+|+|+|+||||||+||++++|.+||+|||++|.|||||++||.+|..++..|..+.. .++.++++.||+||++||++|.
T Consensus 507 ~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~ 586 (734)
T KOG2001|consen 507 AFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIE 586 (734)
T ss_pred hheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987766654 3567889999999999999999
Q ss_pred HHhhhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006084 543 HYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLP-DLLKKVERLKSLCLQYAAATQWLISSSI 618 (662)
Q Consensus 543 ~Y~~~~VIe~~w~~l~~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~-~l~~~l~~ll~~c~~F~~~~~~~~~~~~ 618 (662)
+|++.+||||+|+.|+..+++|+++|+|++.|+.|||.|++.|||+.+ .+++.+.++..+|..||+++|+++ ++.
T Consensus 587 ~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~-~~~ 662 (734)
T KOG2001|consen 587 YYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLT-QSD 662 (734)
T ss_pred HHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHh-ccc
Confidence 999999999999999999999999999999999999999999999986 899999999999999999999999 433
No 2
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=100.00 E-value=2.2e-68 Score=604.02 Aligned_cols=505 Identities=29% Similarity=0.562 Sum_probs=356.1
Q ss_pred HHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecCC-----CCHHHHHHHHHHHHHHhHHHHHHHHhhhccCC--C
Q 006084 60 DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDAS-----MDLALQEMAKRIFPLCESFVLTGQFVESRSQF--K 132 (662)
Q Consensus 60 dlL~aL~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~~-----l~~sl~~l~~~il~lg~~~~~l~~fi~~~~~~--~ 132 (662)
|+|+||+|++|.+|++++. ...|.+.++ +++++++++++++++|+.|.+|++|++..... .
T Consensus 1 dll~~L~G~~s~~f~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~i~~~g~~~~~l~~~i~~~~~~~~~ 68 (542)
T PF04130_consen 1 DLLYALQGVESTFFIWDKD------------SDRFELRPNISSHLSPPSLRSILNEILEIGTLYRRLRSFIERVSSSSSE 68 (542)
T ss_dssp HHHHHHTT---SSSEEETT-------------TEEE--S----TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS----S
T ss_pred CHHHHccCCCCceEEEeCC------------CCeEEECCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 7999999999999999881 246777665 58899999999999999999999999975443 4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchHHHHHhhhhhHHHHHHHHHHHHHh----hcCCCchhhHHHHH
Q 006084 133 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKA----SANNFTGSAVLNLL 207 (662)
Q Consensus 133 ~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~L~~L~~i~~~~----~~~~~~G~~lL~~L 207 (662)
.|++.+|||++++++|.+|+..|..+|.++.. +.+||..+...++|+...++.|++|+.++ ..+..+|+.+|+.|
T Consensus 69 ~~~~~~a~~~~l~~~L~~y~~~l~~le~~~~~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~g~~lL~~L 148 (542)
T PF04130_consen 69 RGPTLQAFASALSSILQEYREFLSELEESILSNGSLSLLQLLAQLRPWFRRLEALADLIQEIIQLSLSQNLRGGQLLSIL 148 (542)
T ss_dssp -SHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TT--HHHHHHHTHHHHHHHHHHHHHHHHH----HHHT--THHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHHHHHHH
Confidence 89999999999999999999999999999877 78999999999999999999999999987 33578999999999
Q ss_pred HHHH-HHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceecCCCCcceeeecccccccccccchhhhhhcccccc-cc
Q 006084 208 QSQA-KAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KD 285 (662)
Q Consensus 208 ~~~~-~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~~~~~~~l~~~~~~~~W~~~y~l-~~ 285 (662)
|+.+ ...+|++..++++..|+.++++||++++..||.+|++.||++||||..+++. ....+..+|.++|.+ .+
T Consensus 149 ~~~~~~~~~g~~~~~~~l~~ll~~~~~p~l~~l~~Wl~~G~l~D~~~EFfI~~~~~~-----~~~~~~~~w~~~f~l~~~ 223 (542)
T PF04130_consen 149 YERIYHQQSGDPELRKILQRLLNRCLQPYLRMLDSWLYRGELDDPYDEFFIQRNKES-----NSESSEDFWDDRFVLRES 223 (542)
T ss_dssp HHHH---HS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTS-SSEEE---------------------EEE-GG
T ss_pred HHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccceeEeecccc-----cCcccchhhccCEEECcc
Confidence 9987 3358999999999999999999999999999999999999999999998321 123467899999999 67
Q ss_pred CCchhh-HHHHHHHHhhhhHHHHHHhhCCCCCCCCccccc---------------cccc--CCccchHHHHHHHHHHHHH
Q 006084 286 GIPSFL-ANIAGKILTTGKYLNVMRECGHSAQVPTSENSK---------------LLSF--GSNHHYLECVKVAYEFASG 347 (662)
Q Consensus 286 ~vP~Fl-~~~a~kIl~~GK~l~vLr~~~~~~~~p~~e~~~---------------~~~f--~~~~~~~~~I~~~~~~as~ 347 (662)
.+|.|+ .++|++|+.+||++++||.|+............ ...+ .....+...|++.+..+++
T Consensus 224 ~~P~fl~~~~a~~Il~~Gk~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 303 (542)
T PF04130_consen 224 RVPSFLSKDLAEKILEIGKSLRLLRSCNPEHEWCSDQELSSDLCLSDKESSESSSLQPFEPLDQDKLESKIESQYKLVNK 303 (542)
T ss_dssp GS-TTS-HHHHHHHHHHHHHHHT------S------TT-SHHH----HHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHH
T ss_pred cCChhcCHHHHHHHHHHHHHHHHHHHhccccccchhccchhhhhhhhhhhhhHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 899999 459999999999999999997654221111000 0011 1225678899999999999
Q ss_pred HHHHHHhhhhcHHHHHHHHHHHHhccCcchHHHHHHHHHHHHcccCcccCHHHHHHHHHHHHHhhhccCCCCCCccceee
Q 006084 348 ELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSV 427 (662)
Q Consensus 348 ~Ll~ll~~~~~L~~~L~~l~~~fLL~~Gdf~~~f~d~~~~~L~k~~~~~~~~~L~sll~~alr~s~~~~d~~~~~l~~~l 427 (662)
.++++++++++|.+||+++|+||||++|||+..|++.+++.+.++..+.+...++..++.+++.......+...... .
T Consensus 304 ~l~~~l~~~~~l~~~l~~l~~~~Ll~~gdf~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 381 (542)
T PF04130_consen 304 SLLDLLFEDYNLLEHLKALRDFFLLGDGDFADSFLESLFEKLESPSSRSSDSNLNSILQEALRASSADWSDESSNLR-S- 381 (542)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHHHHHTT---TTSGGGEE-E-
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHhCccccccchhhhh-h-
Confidence 99999999999999999999999999999999999999999999888888888888888888765433222110000 0
Q ss_pred ccccHHHHHHhhhccccccCCCCCCCCCCCCCcceeeEEeeeecCCcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006084 428 ERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGA 507 (662)
Q Consensus 428 ~~~~l~~~l~~~~~l~~~~~~~s~~~~~~~~~~~~d~~~L~Y~v~wPLslIlt~~~l~~Y~~IFr~Ll~lk~ve~~L~~~ 507 (662)
........... ...... ........+.+..+|+.+.|+|++||||++|||+++|.+|+.||+|||++|++++.|+++
T Consensus 382 ~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~l~L~y~~~~PL~lilt~~~~~~Y~~IF~~Ll~lk~~~~~L~~~ 458 (542)
T PF04130_consen 382 GEISSSTSLSS--NLSSND-SSSRNSNNSSSLEGWDALTLSYKVPWPLNLILTPSVMEKYNRIFRFLLQLKRAEWALQSV 458 (542)
T ss_dssp ---------------------------------TTTTEEEEE---TTGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchh--hhhhhh-hhcccccccccccccceeEEEecCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000 000000 000112344578999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccc-cC----cCchhHHHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 006084 508 WQVHQGARA-FN----ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCL 582 (662)
Q Consensus 508 w~~~~~~r~-~~----~~~~~~~~~~~Lr~~m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l~~a~~ld~li~~H~~fL~~i~ 582 (662)
|...+..+. .. .....+++.+.+|++|.||++++++|++++||++.|.+|.++++++.|+|+|+++|++||++|+
T Consensus 459 w~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~l~~y~~~~vI~~~~~~f~~~l~~~~~~d~l~~~H~~yL~~i~ 538 (542)
T PF04130_consen 459 WRQLRRLSRKFGKPDRQSRPQLRRLQILRHRMQHFVNSLQSYLQFDVIEPSWSEFMEKLEKAKSLDELIEAHDDYLDRIL 538 (542)
T ss_dssp HHHHTSGGG--------S-SHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 998764321 11 1234678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 006084 583 RECL 586 (662)
Q Consensus 583 ~~c~ 586 (662)
++||
T Consensus 539 ~~~f 542 (542)
T PF04130_consen 539 RRCF 542 (542)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 9997
No 3
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-65 Score=519.80 Aligned_cols=537 Identities=22% Similarity=0.351 Sum_probs=418.6
Q ss_pred HHHHHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecCCCCHHHHHHHHHHHHHHhHHHHHHHHhh---hcc----
Q 006084 57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVE---SRS---- 129 (662)
Q Consensus 57 lv~dlL~aL~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~~l~~sl~~l~~~il~lg~~~~~l~~fi~---~~~---- 129 (662)
|++|||.||.|++|+.|.++.+.+... .+=.++.-++||+++++++++.+|..|+.+.+|.+ +..
T Consensus 1 MiHeLLLAl~g~~g~~~~~~~R~~GLa--------~~~d~p~FihPsEr~i~~rliklg~~Y~e~~rFtswIrsvTsH~~ 72 (679)
T KOG2065|consen 1 MIHELLLALRGHNGEQLGIKARFNGLA--------ETTDIPQFIHPSEREIFMRLIKLGKVYQEVERFTSWIRSVTSHSS 72 (679)
T ss_pred CHHHHHHHHhCCChhheeehhhccccc--------cccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 689999999999999999887332111 11112224689999999999999999998888862 211
Q ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchHHHHHhhhhhHHHHHHHHHHHHHhhcCC
Q 006084 130 -----------QFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN 197 (662)
Q Consensus 130 -----------~~~~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~L~~L~~i~~~~~~~~ 197 (662)
...+|.|.+|||.+|...|++|+..|..||+.+.. ...||..++..+......+..+..++.++...+
T Consensus 73 ~r~~~~s~q~~~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg~~~~sls~V~~~L~~ff~Lfp~~~~vi~eI~~~~ 152 (679)
T KOG2065|consen 73 GRKSDTSGQLPDSLHGYYLRALAKGIEMALEEYRAAILRLEQYCLGNERNSLSYVYNALYAFFPLFPFMRNVITEIHVLN 152 (679)
T ss_pred cccccccccCCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 12479999999999999999999999999998865 478999988887777778888889999998889
Q ss_pred CchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceecCCCCcceeeecccc--cccccccchhhh
Q 006084 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSL--LKESLTQDYDAK 275 (662)
Q Consensus 198 ~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~~~--~~~~l~~~~~~~ 275 (662)
.+||+||+.||++ ++|.|.++..+..++..|..+++.+|..||.+|.|+||++||||+..+.. +..+.++...++
T Consensus 153 irGcqlL~~l~k~---HCg~p~ir~~l~~~l~~~h~vmy~qLaaWml~Gvl~D~H~EFFIK~q~~~~~d~ss~~ee~~e~ 229 (679)
T KOG2065|consen 153 IRGCQLLHNLHKQ---HCGHPDIRLELAIKLKPVHNVMYSQLAAWMLFGVLDDVHSEFFIKFQPTDAVDGSSFSEEATES 229 (679)
T ss_pred cchhHHHHHHHHh---ccCCCcHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchheEEeccCCCCCCcccCchhhhhh
Confidence 9999999999996 58999999999999999999999999999999999999999999955421 111111111111
Q ss_pred hh-----------ccccccc-----cCCchhhHH-HHHHHHhhhhHHHHHHhhCCCC-------CCCCccc---c-----
Q 006084 276 YW-----------RQRYSLK-----DGIPSFLAN-IAGKILTTGKYLNVMRECGHSA-------QVPTSEN---S----- 323 (662)
Q Consensus 276 ~W-----------~~~y~l~-----~~vP~Fl~~-~a~kIl~~GK~l~vLr~~~~~~-------~~p~~e~---~----- 323 (662)
.- -+.|.+. ...|.|.+- .+.++|..|+...+.+.-.... ..|..|+ .
T Consensus 230 L~vhsLTgi~l~~l~D~rl~~E~nm~a~~~~~sl~~~s~~l~v~~~~s~~~~~R~~~~i~F~~~~~~~~e~eld~dlt~G 309 (679)
T KOG2065|consen 230 LLVHSLTGIALKNLEDYRLQYEVNMSALPGFFSLVLASKVLFVGQTVSVFKMGRNVKVINFKTDPLAAKEAELDSDLTYG 309 (679)
T ss_pred hhhcccchhhhhchhhhhHHHHHhhhccccceeeeccccceeeccchHHHhhccceeeeeccCCchhhHHhhccccchhh
Confidence 00 0112221 246777776 8888999999888776432110 1111111 0
Q ss_pred ccccc------------CC-----ccchHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 006084 324 KLLSF------------GS-----NHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAR 386 (662)
Q Consensus 324 ~~~~f------------~~-----~~~~~~~I~~~~~~as~~Ll~ll~~~~~L~~~L~~l~~~fLL~~Gdf~~~f~d~~~ 386 (662)
.+.+- .. ...|+..|+..++.|+.+||++..++.+|.+||+.||+|||||+||||..|++.+.
T Consensus 310 ~ll~~~Ed~f~aml~dLk~~~~f~~~~fE~vVd~ir~~va~hLw~l~V~e~DL~gqlk~iKDffLLgrGeffq~F~~~~~ 389 (679)
T KOG2065|consen 310 QLLSGREDEFFAMLVDLKNEDTFNVFRFEKVVDDIRNYVAAHLWELAVNEVDLEGQLKLIKDFFLLGRGEFFQEFCSQMV 389 (679)
T ss_pred hhcCCChHHHHHHHHhhhcCCceeeeeHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 01110 00 13567889999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCcccCHHHHHHHHHHHHHhhhccCCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCcceeeEE
Q 006084 387 EELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFS 466 (662)
Q Consensus 387 ~~L~k~~~~~~~~~L~sll~~alr~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~s~~~~~~~~~~~~d~~~ 466 (662)
..|+.|++....++++--++.|-..+.+..|.|-+.++..+....-..+.. ..+.+. +++ ......+..|||++.
T Consensus 390 ~~m~tpp~~~tE~dv~v~FqlaAtkt~~~dDkyl~~~sL~~~~~grs~~aD---~~~~~t-Gka-~ltsdtsvdGWdAl~ 464 (679)
T KOG2065|consen 390 GTMETPPEERTEKDVTVSFQLAATKTGITDDKYLDKFSLICQRSGRSEPAD---TSDFNT-GKA-FLTSDTSVDGWDALS 464 (679)
T ss_pred HHhhCCchhhcccccchhhhhhhhhccccccccccceEEEecccCCCCccc---hhhhcc-Ccc-cccCCCCccchhhhc
Confidence 999999888877788888888776666677777777766555432100000 000010 000 112245689999999
Q ss_pred eeeecCCcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---ccC-cCchhHHHHHHHHHHHHHHHHHHH
Q 006084 467 LSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGAR---AFN-ASGTAISRSSLLCRSMLKFINSLL 542 (662)
Q Consensus 467 L~Y~v~wPLslIlt~~~l~~Y~~IFr~Ll~lk~ve~~L~~~w~~~~~~r---~~~-~~~~~~~~~~~Lr~~m~~Fv~~l~ 542 (662)
|.|+|.|||+++|||.++.+||.||+||+.+|++++.|+.+|...+..+ +-. ..++.++ |.+|+.|.+|++|+|
T Consensus 465 L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~WA~qm~r~h~~s~q~~d~~~I~--WRlRnhmaFl~~NlQ 542 (679)
T KOG2065|consen 465 LKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRVWAKQMWRAHSASDQPPDNKIIT--WRLRNHMAFLLNNLQ 542 (679)
T ss_pred eeeEeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccch--HHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999998665321 111 1223443 899999999999999
Q ss_pred HHhhhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 006084 543 HYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQ 611 (662)
Q Consensus 543 ~Y~~~~VIe~~w~~l~~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l~~ll~~c~~F~~~~~ 611 (662)
||++.||||++|..++..|+...|++.|..+|+.||.+++.+|||...++..++.+|+.+|.+||+++.
T Consensus 543 yYiQVDVlESQf~~L~~~I~s~~DFe~i~~aH~~fLsnllsqsFll~~pV~~~L~~i~~lC~~Fcn~~~ 611 (679)
T KOG2065|consen 543 YYIQVDVLESQFGILMNVIKSRSDFEVIQRAHTVFLSNLLSQSFLLNEPVYGTLLKIFGLCEKFCNHMT 611 (679)
T ss_pred eeeeehhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999997765
No 4
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=100.00 E-value=5.7e-54 Score=480.94 Aligned_cols=520 Identities=26% Similarity=0.422 Sum_probs=438.8
Q ss_pred cchHHHHHHHHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecCC--CCHHHHHHHHHHHHHHhHHHHHHHHhhhc
Q 006084 51 GVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDAS--MDLALQEMAKRIFPLCESFVLTGQFVESR 128 (662)
Q Consensus 51 ~~qE~~lv~dlL~aL~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~~--l~~sl~~l~~~il~lg~~~~~l~~fi~~~ 128 (662)
.+.|..+|++++|+++|++|.++.++... ..|.+... ++.+...++..+.++|.+|.++..|+...
T Consensus 201 ~i~e~~lvk~v~yvl~gv~~~~~~~~~~~------------~~~~~k~~~~~~~~~~~l~~~lSelg~l~~~~~~~~~~~ 268 (879)
T KOG2000|consen 201 LIKEEDLVKDVLYVLQGVDGALFSFDSEL------------ECFVVKGPVHLPRGISGLLYLLSELGVLYQRVSTFSDQL 268 (879)
T ss_pred cchHHHHHHHHHHHHhhhhhceeecccHH------------hhhhhhccccchhhHHHHHHHHHHHhHHHHhhhhhcchh
Confidence 48999999999999999999999987621 23333222 45677788999999999999999999875
Q ss_pred cCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CCchHHHHHhhhhhHHHHHHHHHHHHHhh
Q 006084 129 SQF---KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG-----------RLSIQGLWFYCQPMLGSMQAVSAVIHKAS 194 (662)
Q Consensus 129 ~~~---~~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~~-----------~lsL~~L~~~~~~~~~~L~~L~~i~~~~~ 194 (662)
... ..|.+.+||++++++.|++|+..|..+..++... .++|..++.++.....+|++++.+++.|.
T Consensus 269 ~l~~~~~~g~v~qaf~~~l~~elq~y~~~v~~~~s~~~~~~~~~~~~~~~~~~~l~r~la~~~~~~~rl~i~~~l~e~~~ 348 (879)
T KOG2000|consen 269 VLDNPYCIGLVGQAFTAELSDELQYYYALVRSLLTSLSRNKIGIVNLKLVSEVTLLRLLAWIYEPGIRLQILCKLVEHCQ 348 (879)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccceecccccchhhhhhhhhHHHHHHHHhhcchhhhHHHHHHHHhc
Confidence 433 4899999999999999999999999988776321 24778888888888899999999999986
Q ss_pred cCCCchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceecCCCCcceeeecccccccccccchhh
Q 006084 195 ANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDA 274 (662)
Q Consensus 195 ~~~~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~~~~~~~l~~~~~~ 274 (662)
..+|+.++..++... .+||+.++.+...++...|.||.+|+..|++.|.+.|+|+||||.+++.... -..+
T Consensus 349 --~~~g~~l~~~~~~f~--~~g~~~i~~i~~~lL~~~~~p~~~~i~~wi~~G~l~D~y~EFfV~~~~~~~~-----~~~d 419 (879)
T KOG2000|consen 349 --VPKGGKLLSAVHEFL--THGDLYVHPIVFSLLHSSCSPYYRMLRNWLLEGELRDTYGEFFVAENPDPGS-----VKDD 419 (879)
T ss_pred --ccCCCcchHHHHHHH--HhCCCcccHHHHHHhhhcchHHHHHHHHHHHcCcccccccceEEeccCCCCc-----cccc
Confidence 778999999998875 5999999999999999999999999999999999999999999999986321 1246
Q ss_pred hhhcccccc-ccCCchhhHH-HHHHHHhhhhHHHHHHhhCCCCCCCCccc---------ccccccCCccchHHHHHHHHH
Q 006084 275 KYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQVPTSEN---------SKLLSFGSNHHYLECVKVAYE 343 (662)
Q Consensus 275 ~~W~~~y~l-~~~vP~Fl~~-~a~kIl~~GK~l~vLr~~~~~~~~p~~e~---------~~~~~f~~~~~~~~~I~~~~~ 343 (662)
.+|+++|.+ .+.+|.|+.. +|.|||.|||++|+|+.|+.+..+-..-. ..-..++.+..+...|+++|.
T Consensus 420 ~lw~~~~~l~~~~lP~Fi~~~~a~kI~l~GKsinfL~~~c~e~~w~~e~~~~~~~~~s~~~~l~~~~~~~l~~~v~~ay~ 499 (879)
T KOG2000|consen 420 RLWHDGYKLRYEMLPSFIPMELAQKILLIGKSINFLRDCCNEQTWSDEIDAKASVEESSTRDLEYASDVGLLGSVSEAYS 499 (879)
T ss_pred cccccccccchhhcccccCHHHHHHHHHhhhHHHHHHHhccccccccchhHHHHHhhhhhhhhccCCChhHHHHHhhhhc
Confidence 799999999 4899999998 99999999999999999887643321100 012344556778899999999
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHHHHHHhccCcchHHHHHHHHHHHHcccCcccCHHHHHHHHHHHHHhh-hccCCCCCCc
Q 006084 344 FASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRST-AAAADPCHED 422 (662)
Q Consensus 344 ~as~~Ll~ll~~~~~L~~~L~~l~~~fLL~~Gdf~~~f~d~~~~~L~k~~~~~~~~~L~sll~~alr~s-~~~~d~~~~~ 422 (662)
...+++.+++.+.+++.+|+.++|+|.|+|+|||+...|+.+.+.+..|.+.+..+.|+..+|.|+|.+ +++.||-
T Consensus 500 e~inhl~~ll~~~~~l~dh~~a~k~ylllGqgDfid~lme~~~n~l~~p~~tl~~~~lt~~ldsaiR~s~na~yd~~--- 576 (879)
T KOG2000|consen 500 EIVNHLNDILEEVISLLDHNQALKRYLLLGQSDFIDVLMEEKKNILARPRDTLPEHKLTGVLDSAVRSSLNAQYDDR--- 576 (879)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHhccchHHHHHHHhhcchhcCcchhhhHhHHHHHHHHHHhhhhccccCCh---
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 6665542
Q ss_pred cceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCcceeeEEeeeecCCcceeeechHHHHHHHHHHHHHHHHHHHHH
Q 006084 423 LTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVER 502 (662)
Q Consensus 423 l~~~l~~~~l~~~l~~~~~l~~~~~~~s~~~~~~~~~~~~d~~~L~Y~v~wPLslIlt~~~l~~Y~~IFr~Ll~lk~ve~ 502 (662)
+.+.++ |.+.. ....+..|||.|+++|.|.-|+++++|++++.+|-+||+|||++||+++
T Consensus 577 --------~vL~Rl------d~~~~------~~~~gd~gwdvfsl~y~v~~p~s~v~t~~~~~~ylrif~flwrlkR~e~ 636 (879)
T KOG2000|consen 577 --------DVLNRL------DVRVL------KLSHGDDGWDVFSLDYAVDGPLSLVLTRELMLKYLRVFNFLWKLKRVEF 636 (879)
T ss_pred --------hhhhhh------hhHhh------hccCCcccceeeeecceecccHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 22221 1234679999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHhhc-cc--ccC------cCchhHHHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhccCCC-HHHHH
Q 006084 503 QL-CGAWQVHQG-AR--AFN------ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKS-IDEVI 571 (662)
Q Consensus 503 ~L-~~~w~~~~~-~r--~~~------~~~~~~~~~~~Lr~~m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l~~a~~-ld~li 571 (662)
.| ...|+.++. .+ +.. .....+.+.+.+..+|.||+.++|+|+.++|||.+|+.|..+++.+.+ +|..+
T Consensus 637 ~L~~~i~k~~m~~~~~~~~~~~~~i~~~~~~~~r~h~~~~E~~~f~sq~q~y~~f~vie~~wk~l~~~~~~a~~~ld~~~ 716 (879)
T KOG2000|consen 637 LLELHIWKMLMKDCNVAKRDRLLKIPEISCALHRCHILTNEMNHFISQMQYYILFEVIECSWKELSKKMEPARNPLDFQL 716 (879)
T ss_pred HHHHHHHHhhhhhhcccccchhcchHHHHhhhhhhhhHHHHHHHHHHhhhhccccchhhcChHHHHHHHhhccCchHHHH
Confidence 99 789998873 11 111 113345678889999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHhcCCC-hh---HHHHHHHHHHHHHHHHHHHHHHh
Q 006084 572 QHHDFFLDKCLRECLLHL-PD---LLKKVERLKSLCLQYAAATQWLI 614 (662)
Q Consensus 572 ~~H~~fL~~i~~~c~L~~-~~---l~~~l~~ll~~c~~F~~~~~~~~ 614 (662)
++|+-|++.+.-.|++.+ ++ +...+..+++.++.+......+.
T Consensus 717 eah~~~~~ti~i~~~l~~~~~~~s~~~~l~~l~e~Il~~~~~~~~~~ 763 (879)
T KOG2000|consen 717 EAHRPFLDTISIRGILQEKASVESIEHSLSALLELILNLAELQSSFY 763 (879)
T ss_pred hhccccccceeecccccCcccchhhHHhHHHHHHHHhhhhccccccc
Confidence 999999999999999997 33 67788888888888887765554
No 5
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=6.2e-26 Score=238.22 Aligned_cols=549 Identities=18% Similarity=0.201 Sum_probs=364.3
Q ss_pred cchHHHHHHHHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecCC-CCHHHHHHHHHHHHHHhHHHHHHHHhhhcc
Q 006084 51 GVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDAS-MDLALQEMAKRIFPLCESFVLTGQFVESRS 129 (662)
Q Consensus 51 ~~qE~~lv~dlL~aL~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~~-l~~sl~~l~~~il~lg~~~~~l~~fi~~~~ 129 (662)
-++|-..+.+-++.+.|.+.-|+..- ..|++.. ....+-|+ ..+-.+..++.+.-+|.....+..|+....
T Consensus 289 lvtepprifeqlWllggtdkLFifih-----idgkcqd---rhlialphlahpcdnfaleqiaalghnafgLlafidekm 360 (1121)
T KOG4344|consen 289 LVTEPPRIFEQLWLLGGTDKLFIFIH-----IDGKCQD---RHLIALPHLAHPCDNFALEQIAALGHNAFGLLAFIDEKM 360 (1121)
T ss_pred ccCCCCcHHHHHHHhcCCceEEEEEe-----ecceeee---eeeeeccccccchHHHHHHHHHHhhhhHHHHHhccchhc
Confidence 35566778888999999877666543 2444432 22222233 356667788999999999999999987643
Q ss_pred CCC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCchHHHHHhhhhhHHH--HHHHH
Q 006084 130 QFK------------------NGLVNHAFAASLRALLLDYEAMVAQLEHQFRL--GRLSIQGLWFYCQPMLGS--MQAVS 187 (662)
Q Consensus 130 ~~~------------------~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~--~~lsL~~L~~~~~~~~~~--L~~L~ 187 (662)
..+ .=..-+||.-++-+.--.|...++.++.-+.+ .+++|..+.-.+.|++.. +..+.
T Consensus 361 ghepcllleglfmfpkkascafFefdkAfmralvkdfisfkeelaeIckcianndqnflLadVVdaLadmlelrhiidlH 440 (1121)
T KOG4344|consen 361 GHEPCLLLEGLFMFPKKASCAFFEFDKAFMRALVKDFISFKEELAEICKCIANNDQNFLLADVVDALADMLELRHIIDLH 440 (1121)
T ss_pred cCCchHhhhhcccccCccccchhhHHHHHHHHHHHHHhhhHHHHHhHHhhhhcCCceeeHHHHHHHHHHHHhhHHHHHHH
Confidence 211 11334555555555444566677777765543 356777777666666543 33333
Q ss_pred HHHHHhh-------cCCCchhhHHHHHHHHHHHh--cCC--hHH-HHHHHHHHHHHhHHHHHHHHHHHhhceecCCCCcc
Q 006084 188 AVIHKAS-------ANNFTGSAVLNLLQSQAKAM--AGD--NTV-RSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEF 255 (662)
Q Consensus 188 ~i~~~~~-------~~~~~G~~lL~~L~~~~~~~--~Gd--~~~-~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~Dp~~EF 255 (662)
.+.-.-. ........+++-+++.+..+ .|+ ++. ..++-.+......||++.++.|+..|.++|...||
T Consensus 441 klffhGVaetppdeffavgardLlnpickaiiaYddrgeadeakntlilFsiefeehfpqLqlldElaedghLddGaaef 520 (1121)
T KOG4344|consen 441 KLFFHGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIEFEEHFPQLQLLDELAEDGHLDDGAAEF 520 (1121)
T ss_pred HHhhcccccCCCchhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEehhhhhHHHHHHHHHHHhccccccHHHH
Confidence 3321110 01223357899999876532 343 322 22344566778899999999999999999999999
Q ss_pred eeeecccccccccccchhhhhhc---------------ccccc-------ccC--------CchhhHHHHHHHHhhhhHH
Q 006084 256 FIAEDKSLLKESLTQDYDAKYWR---------------QRYSL-------KDG--------IPSFLANIAGKILTTGKYL 305 (662)
Q Consensus 256 fI~~~~~~~~~~l~~~~~~~~W~---------------~~y~l-------~~~--------vP~Fl~~~a~kIl~~GK~l 305 (662)
.|.++.+.-- ....+|- ++|.+ ++. +-.|..+.-..|..+||..
T Consensus 521 iiarlknrlv------kHrdfqyaphqklataekfeneekmcdiadassgraagedhlqefiVeFckeedaniimagkrk 594 (1121)
T KOG4344|consen 521 IIARLKNRLV------KHRDFQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVEFCKEEDANIIMAGKRK 594 (1121)
T ss_pred HHHHHhcccc------ccchhhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9998765310 0112220 11211 012 3356666556788999999
Q ss_pred HHHHh--hCCCC----------C-CCC-------------------------------ccc----------------cc-
Q 006084 306 NVMRE--CGHSA----------Q-VPT-------------------------------SEN----------------SK- 324 (662)
Q Consensus 306 ~vLr~--~~~~~----------~-~p~-------------------------------~e~----------------~~- 324 (662)
..+.. |..+- + +|. .|. .+
T Consensus 595 qllgnlqcaEddKOGaeafdaeqscpLYqLfLEhalergehgddlcspntLsEmlqankEiqLmklhdeaeshffalddV 674 (1121)
T KOG4344|consen 595 QLLGNLQCAEDDLCLAEAFDAEQSCPLYQLFLEHALERGEHGDDLCSPNTLSEMLQANKEIQLMKLHDEAESHFFALDDV 674 (1121)
T ss_pred HhhccccccchhhHHHHhhhhhhcCcHHHHHHHHHHHhccccccccCHHHHHHHHhhccccchhhHHHHHHHhHHHHhhc
Confidence 98874 43221 1 110 000 00
Q ss_pred -----ccccCC--------------------------c---------cchHHHHHHH--HHHHHHHHHHHHhhhhcHHHH
Q 006084 325 -----LLSFGS--------------------------N---------HHYLECVKVA--YEFASGELLNLIKERYDLMGK 362 (662)
Q Consensus 325 -----~~~f~~--------------------------~---------~~~~~~I~~~--~~~as~~Ll~ll~~~~~L~~~ 362 (662)
-..|.+ + .-+...|+++ |-..+..|+.-+.+++.+.+.
T Consensus 675 hcgadaidfadepeedkDfedkfacgdvcvdrsqeirncelFaiflqpclephidkQrerLdccgnLManikKdlelsec 754 (1121)
T KOG4344|consen 675 HCGADAIDFADEPEEDKDFEDKFACGDVCVDRSQEIRNCELFAIFLQPCLEPHIDKQRERLDCCGNLMANIKKDLELSEC 754 (1121)
T ss_pred cCcccccchhhCCCccccHHHhhccccccccccccceehhhHHHHhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 000100 0 1124578888 566788999999999999999
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHcccCcccCHHHHHHHHHHHHHhhhccCC--CCCCccceeeccccHHH-HHHhh
Q 006084 363 LRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAAD--PCHEDLTCSVERSSLLK-RMATL 439 (662)
Q Consensus 363 L~~l~~~fLL~~Gdf~~~f~d~~~~~L~k~~~~~~~~~L~sll~~alr~s~~~~d--~~~~~l~~~l~~~~l~~-~l~~~ 439 (662)
|++.+.||++..||.+..|.-..+..+...-.+-+...++..|+.|..-.. .+. ++...+.+.++..+-.+ .|+++
T Consensus 755 LQakreffeaegedlmrdfwlaiedaIRakckeqnVaekmrfLqeamglek-rYlfvedsnaLfirfEnvdnakkaLgsv 833 (1121)
T KOG4344|consen 755 LQAKREFFEAEGEDLMRDFWLAIEDAIRAKCKEQNVAEKMRFLQEAMGLEK-RYLFVEDSNALFIRFENVDNAKKALGSV 833 (1121)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhhhh-cccccccccceeEEeecccchhhhcchh
Confidence 999999999999999999998888877665556566666666776653210 111 33344555444211000 01100
Q ss_pred hc-----------------cccccCCCCCCCCCCCCCcceeeEEeeee--cCCcceeeechHHHHHHHHHHHHHHHHHHH
Q 006084 440 KG-----------------VEIKTSSDSVDLEQPVSITGLETFSLSYK--VQWPLSIVISRKALTKYQMVFRLLFHCKHV 500 (662)
Q Consensus 440 ~~-----------------l~~~~~~~s~~~~~~~~~~~~d~~~L~Y~--v~wPLslIlt~~~l~~Y~~IFr~Ll~lk~v 500 (662)
.. +-++..+.- ....-....++|++.|+|+ ++||..+|||+.+|..||.+|+.|+++|++
T Consensus 834 ltsklcavllphypqlahylhvklisqi-nsnsikvveaLdaieLdferpmamhqdiiislacmkdYNqVflLlLkiKWA 912 (1121)
T KOG4344|consen 834 LTSKLCAVLLPHYPQLAHYLHVKLISQI-NSNSIKVVEALDAIELDFERPMAMHQDIIISLACMKDYNQVFLLLLKIKWA 912 (1121)
T ss_pred hhhhhhhhhcccchhhhhHHHHHHHhhh-cccchhhhhhhhheeecccCCcccchheEecHHHHHHHHHHHHHHHHHHHH
Confidence 00 000000000 0011234678999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHh---hc----cc---------------ccCcCchhHHHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHH
Q 006084 501 ERQLCGAWQVH---QG----AR---------------AFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMH 558 (662)
Q Consensus 501 e~~L~~~w~~~---~~----~r---------------~~~~~~~~~~~~~~Lr~~m~~Fv~~l~~Y~~~~VIe~~w~~l~ 558 (662)
.|.|.++-... +. .| +.+..+..++|...+|.+++||||+|+.|+|..|+++.-.+|+
T Consensus 913 kwkLdnllfgelvsmaekpRakegliheqdtvaqfcapkdliglqIhRleilRfkLiffiNnLHahIMeailhStgleFe 992 (1121)
T KOG4344|consen 913 KWKLDNLLFGELVSMAEKPRAKEGLIHEQDTVAQFCAPKDLIGLQIHRLEILRFKLIFFINNLHAHIMEAILHSTGLEFE 992 (1121)
T ss_pred HHhhhhhhhhhhhhhhhhhhhhccccccccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 99999854321 10 01 1122356789999999999999999999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 006084 559 NRLQTAKSIDEVIQHHDFFLDKCLRECLLHL--PDLLKKVERLKSLCLQYAAATQWLIS 615 (662)
Q Consensus 559 ~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~--~~l~~~l~~ll~~c~~F~~~~~~~~~ 615 (662)
.++.+|+|+|+++..|++||..+...|+|++ +.+..+|.+|+.++..|++-||...+
T Consensus 993 hqieEaKdldeLiiiHdehLatihdhClLrdefkafkeAidkifhLalmfadeWqtcas 1051 (1121)
T KOG4344|consen 993 HQIEEAKDLDELIIIHDEHLATIHDHCLLRDEFKAFKEAIDKIFHLALMFADEWQTCAS 1051 (1121)
T ss_pred HHHhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhh
Confidence 9999999999999999999999999999997 46788999999999999999997775
No 6
>PF14609 GCP5-Mod21: gamma-Tubulin ring complex non-core subunit mod21
Probab=49.50 E-value=2.2e+02 Score=31.48 Aligned_cols=64 Identities=11% Similarity=0.160 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecC---CCCHH-HHHHHHHHHHHHhHHHHHHHHhh
Q 006084 51 GVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLA-LQEMAKRIFPLCESFVLTGQFVE 126 (662)
Q Consensus 51 ~~qE~~lv~dlL~aL~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~---~l~~s-l~~l~~~il~lg~~~~~l~~fi~ 126 (662)
.+.|+-+++|.+++|+|++|-+|.... ..|...| +++.+ ++.++..+...|..+..+++-..
T Consensus 179 riseqs~~~e~IymL~Gy~~~~f~~ve--------------~~l~~~P~~~~ls~~i~~~il~~~~~~G~~l~~~nqva~ 244 (653)
T PF14609_consen 179 RISEQSWKYEIIYMLMGYQGHIFTCVE--------------EILRHAPQNQHLSYWIQQHILSNFCNWGRELHIMNQVAN 244 (653)
T ss_pred eecccchHHHHHHHHhcCcchhhhhhH--------------hhhcccccccchHHHHHHHHHHHhhccccchHHHHHHhC
Confidence 688999999999999999999996544 1222223 33333 34567777777877777776554
Q ss_pred hc
Q 006084 127 SR 128 (662)
Q Consensus 127 ~~ 128 (662)
++
T Consensus 245 ~~ 246 (653)
T PF14609_consen 245 ER 246 (653)
T ss_pred Cc
Confidence 43
No 7
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.10 E-value=27 Score=39.25 Aligned_cols=125 Identities=12% Similarity=0.051 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCchHHHHHhhhhhHHHHHHHHHHHHHhhcC----CCchhhHHHHHH
Q 006084 135 LVNHAFAASLRALLLDYEAMVAQLEHQFRLG--RLSIQGLWFYCQPMLGSMQAVSAVIHKASAN----NFTGSAVLNLLQ 208 (662)
Q Consensus 135 ~v~~Al~~al~~~L~~y~~~v~~lE~~~~~~--~lsL~~L~~~~~~~~~~L~~L~~i~~~~~~~----~~~G~~lL~~L~ 208 (662)
+.-.-|+-+.+++|+...+.|...|.....+ .-++...-.+++.....|+.|.+++...... ......++|.++
T Consensus 451 ppdeffavgardLlnpickaiiaYddrgeadeakntlilFsiefeehfpqLqlldElaedghLddGaaefiiarlknrlv 530 (1121)
T KOG4344|consen 451 PPDEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIEFEEHFPQLQLLDELAEDGHLDDGAAEFIIARLKNRLV 530 (1121)
T ss_pred CCchhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEehhhhhHHHHHHHHHHHhccccccHHHHHHHHHhcccc
Confidence 4557788999999999999998888765432 1122221122345556677777776543210 112235566665
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceecCCCCcceeeecc
Q 006084 209 SQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDK 261 (662)
Q Consensus 209 ~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~ 261 (662)
+... .-....+.+.........+-|+..++.|.......|...||+|+-..
T Consensus 531 kHrd--fqyaphqklataekfeneekmcdiadassgraagedhlqefiVeFck 581 (1121)
T KOG4344|consen 531 KHRD--FQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVEFCK 581 (1121)
T ss_pred ccch--hhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHHHHH
Confidence 5321 11124566777778888899999999999998899999999997554
No 8
>PLN00032 DNA-directed RNA polymerase; Provisional
Probab=29.15 E-value=68 Score=25.53 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=37.5
Q ss_pred hhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 006084 546 TFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKV 596 (662)
Q Consensus 546 ~~~VIe~~w~~l~~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l 596 (662)
...||...|.++.+.+++-.+-.++++.-. .=..|.+..||+..++.+.+
T Consensus 10 CGkvig~~we~y~~~~~~g~~~~~~LD~LG-~~RYCCRRMllsHvdlid~l 59 (71)
T PLN00032 10 CGKVIGNKWDTYLDLLQADYSEGDALDALG-LVRYCCRRMLMTHVDLIEKL 59 (71)
T ss_pred CCCCcHHHHHHHHHHHhcCCCHHHHHHHhC-chhhhhhhHHHHHHHHHHHH
Confidence 456899999999999988888877766543 33567888898887665443
No 9
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=22.38 E-value=4.7e+02 Score=25.55 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhcCCCchHHHHHhhhhhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006084 149 LDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMT 228 (662)
Q Consensus 149 ~~y~~~v~~lE~~~~~~~lsL~~L~~~~~~~~~~L~~L~~i~~~~~~~~~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll 228 (662)
-+|..-+.+||.|+.++...+.++...+..+..++.+-+-.+..+ -|+.+|-. ++|-.....+...++
T Consensus 11 ~~~~~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l---------~~S~iy~~---~~~y~~~~~It~~ll 78 (251)
T COG5415 11 TKYTADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVL---------ALSYIYWE---YHGYRPYLVITALLL 78 (251)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------HHHHHHhh---ccccchhHHHHHHHH
Confidence 457777888888876665555555555555544443322111111 12555543 678777666666666
Q ss_pred HHHhHHHHHHHHHHHhh
Q 006084 229 QCASNAYLGILERWVYE 245 (662)
Q Consensus 229 ~~~~~py~~~l~~Wl~~ 245 (662)
-..+--.++..-.|+++
T Consensus 79 gs~slymfrwal~~lye 95 (251)
T COG5415 79 GSGSLYMFRWALTKLYE 95 (251)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 65555556667777764
No 10
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=22.17 E-value=1.4e+02 Score=35.87 Aligned_cols=120 Identities=12% Similarity=-0.031 Sum_probs=88.1
Q ss_pred CcceeeEEeeeecCCcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-ccccCcCchhHHHHHHHHHHHHH
Q 006084 459 ITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQ-G-ARAFNASGTAISRSSLLCRSMLK 536 (662)
Q Consensus 459 ~~~~d~~~L~Y~v~wPLslIlt~~~l~~Y~~IFr~Ll~lk~ve~~L~~~w~~~~-~-~r~~~~~~~~~~~~~~Lr~~m~~ 536 (662)
..++|.....|++..++.-.++. ..+ ..+|.++|++.+-.|.+.+.|.... . ++........ .-..|..|.|
T Consensus 589 ~~~gd~gwdvfsl~y~v~~p~s~-v~t--~~~~~~ylrif~flwrlkR~e~~L~~~i~k~~m~~~~~---~~~~~~~~i~ 662 (879)
T KOG2000|consen 589 LSHGDDGWDVFSLDYAVDGPLSL-VLT--RELMLKYLRVFNFLWKLKRVEFLLELHIWKMLMKDCNV---AKRDRLLKIP 662 (879)
T ss_pred ccCCcccceeeeecceecccHHH-Hhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc---cccchhcchH
Confidence 56788889999999999998874 233 9999999999999999999998773 2 2211100011 3456778999
Q ss_pred HHHHHHHHhhhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcC
Q 006084 537 FINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLL 587 (662)
Q Consensus 537 Fv~~l~~Y~~~~VIe~~w~~l~~~l~~a~~ld~li~~H~~fL~~i~~~c~L 587 (662)
++.+..++....+.|-+| |..+++--..++ ++.+|-.++...+..-..
T Consensus 663 ~~~~~~~r~h~~~~E~~~--f~sq~q~y~~f~-vie~~wk~l~~~~~~a~~ 710 (879)
T KOG2000|consen 663 EISCALHRCHILTNEMNH--FISQMQYYILFE-VIECSWKELSKKMEPARN 710 (879)
T ss_pred HHHhhhhhhhhHHHHHHH--HHHhhhhccccc-hhhcChHHHHHHHhhccC
Confidence 999999999887776544 444555444454 899999999888876665
No 11
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=21.98 E-value=2.6e+02 Score=22.80 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=30.6
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q 006084 560 RLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYA 607 (662)
Q Consensus 560 ~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l~~ll~~c~~F~ 607 (662)
.+++.-+.+||++.|..++..+...+ ..++...+.=|+++..-|.
T Consensus 30 ~i~~~I~PEeIv~iH~~~v~~l~~~~---~~~v~~sld~LlEvm~~yg 74 (77)
T PF08673_consen 30 LIEKDISPEEIVEIHKSAVQELSPSL---PEDVLDSLDFLLEVMIGYG 74 (77)
T ss_dssp HHHTT--HHHHHHHHHHHHHHH-TTS----HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcccc---HHHHHHHHHHHHHHHHHcC
Confidence 34566789999999999999887665 5567777766666665553
No 12
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=20.93 E-value=7.5e+02 Score=24.44 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhcc
Q 006084 106 EMAKRIFPLCESFVLTGQFVESRS 129 (662)
Q Consensus 106 ~l~~~il~lg~~~~~l~~fi~~~~ 129 (662)
.+.+-+..+|.+|..|..++..+.
T Consensus 13 ~La~~l~~l~~~Y~~v~s~~~~~~ 36 (229)
T PF10334_consen 13 TLASTLSELGDLYSLVVSFWSRRL 36 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466778899999999999988754
Done!