Query 006084
Match_columns 662
No_of_seqs 255 out of 861
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 15:31:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 100.0 1.8E-86 6.1E-91 765.4 52.4 536 57-612 1-598 (677)
2 2jxc_B Stonin-2, stoned B; end 72.9 4.7 0.00016 26.9 3.9 37 3-54 6-42 (45)
3 3t98_B Nucleoporin NUP58/NUP45 35.8 1.7E+02 0.0059 23.6 8.7 54 134-187 7-64 (93)
4 4e17_B Catenin alpha-1; four h 17.3 1E+02 0.0036 20.6 2.8 17 137-153 21-37 (40)
5 3obv_E Protein diaphanous homo 15.6 6.9E+02 0.023 26.2 10.4 90 102-191 202-305 (457)
6 1w53_A Phosphoserine phosphata 13.5 3.2E+02 0.011 21.5 5.2 43 561-607 38-81 (84)
7 2j6y_A Phosphoserine phosphata 12.2 6E+02 0.021 21.1 6.8 51 560-614 37-88 (111)
8 4a64_A Cullin-4B, CUL4B, CUL-4 12.1 6.8E+02 0.023 25.0 9.0 72 523-600 269-345 (354)
9 1ef4_A Subunit N, DNA-directed 10.2 1.2E+02 0.0042 21.9 1.7 44 547-591 10-53 (55)
10 3ljm_A Coil Ser L9C; de novo d 9.8 3E+02 0.01 16.5 2.9 22 139-160 8-29 (31)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-86 Score=765.39 Aligned_cols=536 Identities=22% Similarity=0.367 Sum_probs=443.4
Q ss_pred HHHHHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecC---CCCHHHHHHHHHHHHHHhHHHHHHHHhhhccCC--
Q 006084 57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLALQEMAKRIFPLCESFVLTGQFVESRSQF-- 131 (662)
Q Consensus 57 lv~dlL~aL~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~---~l~~sl~~l~~~il~lg~~~~~l~~fi~~~~~~-- 131 (662)
||+|||+||+|++|.||++.+ ..+|.|++ .+++|+++++++++++|.+|++|++|++.....
T Consensus 1 Ml~dlL~~L~G~~g~~i~~~~-------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~ 67 (677)
T 3rip_A 1 MIHELLLALSGYPGSIFTWNK-------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQ 67 (677)
T ss_dssp CHHHHHHHHTTCCCSSSEEET-------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred ChHHHHHHHcCCCCCceEecC-------------CCceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 689999999999999999876 14689988 567999999999999999999999999964321
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchHHHHHhhhhhHHHHHHHHHHHHHhhcCC
Q 006084 132 -------------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN 197 (662)
Q Consensus 132 -------------~~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~L~~L~~i~~~~~~~~ 197 (662)
..|+|.+|||++|+++|++|+..|+++|+++.. +.+||+.++.+++|+...|+.|++|+.++..+.
T Consensus 68 ~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~ 147 (677)
T 3rip_A 68 QQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQK 147 (677)
T ss_dssp -----------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 169999999999999999999999999999854 579999999999999999999999999887667
Q ss_pred CchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceecCCCCcceeeecccccccccc--------
Q 006084 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLT-------- 269 (662)
Q Consensus 198 ~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~~~~~~~l~-------- 269 (662)
++||++|+.||+.+ .+||+.+++++.+|+.+|++||++||..||++|+|.|||+||||.+++...+....
T Consensus 148 ~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~ 225 (677)
T 3rip_A 148 IHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL 225 (677)
T ss_dssp CCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-----------------
T ss_pred CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEecccccccccccccccccc
Confidence 89999999999987 49999999999999999999999999999999999999999999998654321100
Q ss_pred -------------------c-chhhhhhcccccc-ccCCchhhHH-HHHHHHhhhhHHHHHHhhCCCCCC-----CCccc
Q 006084 270 -------------------Q-DYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQV-----PTSEN 322 (662)
Q Consensus 270 -------------------~-~~~~~~W~~~y~l-~~~vP~Fl~~-~a~kIl~~GK~l~vLr~~~~~~~~-----p~~e~ 322 (662)
. +....+|..+|+| .+++|+|+++ +|+|||.|||++|+||+|+..... +..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~ 305 (677)
T 3rip_A 226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQED 305 (677)
T ss_dssp ---------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHH
T ss_pred ccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHH
Confidence 0 0112479999999 6889999986 999999999999999998754210 00000
Q ss_pred c------cccccC--CccchHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHhccCcchHHHHHHHHHHHHcccCc
Q 006084 323 S------KLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLD 394 (662)
Q Consensus 323 ~------~~~~f~--~~~~~~~~I~~~~~~as~~Ll~ll~~~~~L~~~L~~l~~~fLL~~Gdf~~~f~d~~~~~L~k~~~ 394 (662)
. .+.++. +...|...|+++|..||+.|+++++++++|.+||+++|+||||++|||+.+|++.++++|.++..
T Consensus 306 ~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~ 385 (677)
T 3rip_A 306 TFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPT 385 (677)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Confidence 0 011110 12467889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCcceeeEEeeeecCCc
Q 006084 395 EITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP 474 (662)
Q Consensus 395 ~~~~~~L~sll~~alr~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~s~~~~~~~~~~~~d~~~L~Y~v~wP 474 (662)
+++..+|+..|+.|++.+....+++.+.+.+.+........ ..-.+.+. .+ ........+..|||+|.|+|+||||
T Consensus 386 ~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~-~~~~~~~~--~~-~~~~~~~~~~~~~d~l~L~Y~v~~P 461 (677)
T 3rip_A 386 AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHK-DATQAREG--PS-RETSPREAPASGWAALGLSYKVQWP 461 (677)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC---------------------------CCTTTTEEEEECCCTT
T ss_pred ccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccc-cccccccc--cc-cccccccCCccchheEEEEEeCCCh
Confidence 99999999999999998776666677777776654332100 00000000 00 0011223457899999999999999
Q ss_pred ceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHhhhhcchhhH
Q 006084 475 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNW 554 (662)
Q Consensus 475 LslIlt~~~l~~Y~~IFr~Ll~lk~ve~~L~~~w~~~~~~r~~~~~~~~~~~~~~Lr~~m~~Fv~~l~~Y~~~~VIe~~w 554 (662)
|++|||+++|.+|++||+|||++||+++.|+++|+.++..|........+++ +.+|++|+|||+++++|++++||+++|
T Consensus 462 L~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w 540 (677)
T 3rip_A 462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQF 540 (677)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765543322233444 899999999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 006084 555 HVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQW 612 (662)
Q Consensus 555 ~~l~~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l~~ll~~c~~F~~~~~~ 612 (662)
.+|++++++++|+|+|+++|++||++|+++|||+.+++.+++.+|+++|.+||..+++
T Consensus 541 ~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~ 598 (677)
T 3rip_A 541 SQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQ 598 (677)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999886
No 2
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=72.90 E-value=4.7 Score=26.91 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=26.8
Q ss_pred CCCCCCCCCcccCCCcCCccccchhhhhhhccccccCcccccCCCCCccchH
Q 006084 3 MSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQE 54 (662)
Q Consensus 3 ~~~p~~p~w~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qE 54 (662)
.++|..|+|...-|||..++-. -.+.||.+++.-..|
T Consensus 6 p~~~e~~Pw~atNPFLde~l~d---------------vqPSPINPFsafFeE 42 (45)
T 2jxc_B 6 PSVTEASPWRATNPFLNETLQD---------------VQPSPINPFSAFFEE 42 (45)
T ss_dssp CCCSCCCCSCSSCSSSSTTTSC---------------CCCCTTCSCTTHHHH
T ss_pred CccccCCCcccCCcchhhhHHh---------------CCCCCCChHHHhhhh
Confidence 4678889999999999988721 224567777765544
No 3
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=35.82 E-value=1.7e+02 Score=23.57 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCchHHHHHhhhhhHHHHHHHH
Q 006084 134 GLVNHAFAASLRALLLDYEAMVAQLEHQFRL----GRLSIQGLWFYCQPMLGSMQAVS 187 (662)
Q Consensus 134 g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~----~~lsL~~L~~~~~~~~~~L~~L~ 187 (662)
..+.+-++.-.++.|..|+..|.++|+.+.. ..+|.+.|..-++.....+-.||
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLA 64 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALA 64 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999988644 35677776655555544444444
No 4
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=17.30 E-value=1e+02 Score=20.60 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006084 137 NHAFAASLRALLLDYEA 153 (662)
Q Consensus 137 ~~Al~~al~~~L~~y~~ 153 (662)
++|+..||+.+|.+|..
T Consensus 21 CnavrqALQdLlseY~~ 37 (40)
T 4e17_B 21 CNAVRQALQDLLSEYMG 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56777777888888753
No 5
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=15.59 E-value=6.9e+02 Score=26.23 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhHHHH--------------HHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 006084 102 LALQEMAKRIFPLCESFVL--------------TGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRL 167 (662)
Q Consensus 102 ~sl~~l~~~il~lg~~~~~--------------l~~fi~~~~~~~~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~~~l 167 (662)
..++.++.-+|.+|++... |.+..+..+.......+|-++..+++.--+...+...|.+--....+
T Consensus 202 ~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~~p~l~~f~~eL~~v~~Aakv 281 (457)
T 3obv_E 202 ENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRV 281 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTCBCSSTTCBHHHHHHHHHHHHCGGGGGHHHHCTTHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhhhcCCCCccHHHHHHHHHHHcCccccCChhhhhhHHhhccC
Confidence 4456667777777765432 22222222221223455666666554332322333333222223578
Q ss_pred chHHHHHhhhhhHHHHHHHHHHHH
Q 006084 168 SIQGLWFYCQPMLGSMQAVSAVIH 191 (662)
Q Consensus 168 sL~~L~~~~~~~~~~L~~L~~i~~ 191 (662)
++..|...+......+..+..-+.
T Consensus 282 s~~~l~~dl~~L~~~l~~v~~~l~ 305 (457)
T 3obv_E 282 SAENLQKSLDQMKKQIADVERDVQ 305 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877666666555555544443
No 6
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=13.50 E-value=3.2e+02 Score=21.55 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=31.8
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHH
Q 006084 561 LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYA 607 (662)
Q Consensus 561 l~~a~~ld~li~~H~~fL~~i~~~c~L~-~~~l~~~l~~ll~~c~~F~ 607 (662)
+++.-..+|++..|.+++..+. ++ ..++...+.=|+.+..-|.
T Consensus 38 iek~i~PEeiV~iHk~~i~el~----~~l~e~v~~Sfd~L~Evm~gyG 81 (84)
T 1w53_A 38 IEHQIPPEEIISIHRKVLKELY----PSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHhC
Confidence 4567889999999998877654 44 5677777777777766553
No 7
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=12.15 E-value=6e+02 Score=21.08 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=38.5
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHh
Q 006084 560 RLQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYAAATQWLI 614 (662)
Q Consensus 560 ~l~~a~~ld~li~~H~~fL~~i~~~c~L~-~~~l~~~l~~ll~~c~~F~~~~~~~~ 614 (662)
.+++.-..++|+..|..++..+ ..+ ...+...+.=|+.+..-|.-.-+...
T Consensus 37 liek~I~PEeiV~iHk~~i~~l----~~~l~e~v~~s~d~L~Evm~gyGlayre~q 88 (111)
T 2j6y_A 37 TIEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYGMAYQEHQ 88 (111)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHcCCCHHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 3456778999999999999887 555 56788888888888888887665544
No 8
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=12.12 E-value=6.8e+02 Score=25.04 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=44.7
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHhhhhcchhhHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 006084 523 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRL-QTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVE 597 (662)
Q Consensus 523 ~~~~~~~Lr~~----m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l-~~a~~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l~ 597 (662)
.+++++.|..+ +-.+.+.+..|+.....+ ..... +...=|+++++.|+.| +.+.+.||-.++.+..++.
T Consensus 269 dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~-----iv~~~~~~~~~V~~LL~l~~k~-~~iv~~~F~~d~~f~~al~ 342 (354)
T 4a64_A 269 DLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGST-----IVINPEKDKTMRQELDDFKDKV-DHIIDICFLKNEKFINAMK 342 (354)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH-----HHHSCCSSSCHHHHHHHHHHHH-HHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHHHHH-----HHcCccchHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHH
Confidence 34455544432 345666677776554321 11111 2234589999999976 5566789999998888877
Q ss_pred HHH
Q 006084 598 RLK 600 (662)
Q Consensus 598 ~ll 600 (662)
+-+
T Consensus 343 ~af 345 (354)
T 4a64_A 343 EAF 345 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 9
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=10.25 E-value=1.2e+02 Score=21.89 Aligned_cols=44 Identities=11% Similarity=0.240 Sum_probs=31.1
Q ss_pred hhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChh
Q 006084 547 FEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPD 591 (662)
Q Consensus 547 ~~VIe~~w~~l~~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~~ 591 (662)
..||...|.++.+.+++-.+-.++++.-. .=.-|.+..||+.-+
T Consensus 10 Gkvi~~~we~y~~~~~~~~~~~~~LD~Lg-~~RyCCRRMlLthvd 53 (55)
T 1ef4_A 10 GKPVSAYFNEYQRRVADGEDPKDVLDDLG-LKRYCCRRMLISHVE 53 (55)
T ss_dssp TSCCHHHHHHHHHHHHHTCCHHHHHHHHT-CSSHHHHHHHTTTCC
T ss_pred CCChhHHHHHHHHHHHcCCCHHHHHHHcC-CceEeccccceehee
Confidence 46899999999999998778776655432 114566777776543
No 10
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=9.79 E-value=3e+02 Score=16.50 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006084 139 AFAASLRALLLDYEAMVAQLEH 160 (662)
Q Consensus 139 Al~~al~~~L~~y~~~v~~lE~ 160 (662)
-=|+++.+-|+.....+..||+
T Consensus 8 kkcaalesklqalekklealeh 29 (31)
T 3ljm_A 8 KKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3477777777777766666653
Done!