Query 006084
Match_columns 662
No_of_seqs 255 out of 861
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 15:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006084.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006084hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hyja2 a.121.1.1 (A:83-200) P 23.9 1.3E+02 0.0098 22.6 8.1 48 199-249 25-72 (118)
2 d1rkta2 a.121.1.1 (A:83-205) H 23.0 1.6E+02 0.011 22.7 8.4 65 182-249 6-70 (123)
3 d1kxpd3 a.126.1.1 (D:405-473) 18.1 42 0.0031 23.3 2.9 27 564-593 31-57 (69)
4 d1ldja2 a.118.17.1 (A:17-410) 15.5 1.6E+02 0.012 27.7 8.0 75 523-603 302-386 (394)
5 d1pb6a2 a.121.1.1 (A:86-211) H 15.1 1.2E+02 0.0087 23.4 5.7 35 215-249 35-69 (126)
6 d2id3a2 a.121.1.1 (A:81-203) P 11.3 2.7E+02 0.02 21.0 6.9 50 197-249 23-72 (123)
7 d1w53a_ a.186.1.2 (A:) Phospho 9.8 2.7E+02 0.019 20.1 5.5 44 560-607 37-81 (84)
8 d2i10a2 a.121.1.1 (A:79-194) P 9.4 70 0.0051 24.3 2.3 52 196-250 22-73 (116)
9 d1knya1 a.24.16.1 (A:126-253) 6.7 5.1E+02 0.037 19.9 9.5 17 229-245 99-115 (128)
10 d2hyec2 a.118.17.1 (C:55-401) 6.5 3.9E+02 0.029 24.0 6.9 37 566-603 307-343 (347)
No 1
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=23.85 E-value=1.3e+02 Score=22.58 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=40.0
Q ss_pred chhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceec
Q 006084 199 TGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (662)
Q Consensus 199 ~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~ 249 (662)
.||.+.+..-+. ...|+.+++.+...+.....-+-+.|..-...|++.
T Consensus 25 ~GC~~~~~~~E~---~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~ 72 (118)
T d2hyja2 25 GGCLLTAALSEY---DGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELP 72 (118)
T ss_dssp TSCHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCChhHhHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 478888777664 367889999999999999999999999999999874
No 2
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=22.99 E-value=1.6e+02 Score=22.73 Aligned_cols=65 Identities=9% Similarity=0.069 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceec
Q 006084 182 SMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (662)
Q Consensus 182 ~L~~L~~i~~~~~~~~~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~ 249 (662)
.+.++..++..+.. .+-.+--+.++......-||.++..+...+..-..-+..+|..++..|++.
T Consensus 6 ~~~~~d~~~~~l~~---~~~~~~~~~~E~~~~a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~~ 70 (123)
T d1rkta2 6 ISSYLDELTEGLRD---VADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQ 70 (123)
T ss_dssp HHHHHHHHHHHTTT---GGGSSHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHh---cCcchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 34455556655532 222233344454433467999999999999999999999999999888874
No 3
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.13 E-value=42 Score=23.33 Aligned_cols=27 Identities=22% Similarity=0.630 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCChhHH
Q 006084 564 AKSIDEVIQHHDFFLDKCLRECLLHLPDLL 593 (662)
Q Consensus 564 a~~ld~li~~H~~fL~~i~~~c~L~~~~l~ 593 (662)
...+.++++.|.+|-.+| |.++.|+++
T Consensus 31 ~~~l~~mVekrsdfASkC---CsiNsPPlY 57 (69)
T d1kxpd3 31 PKELAKLVNKRSDFASNC---CSINSPPLY 57 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH---SSTTCCHHH
T ss_pred HHHHHHHHHHHhHHHHHh---hcCCCCchh
Confidence 347899999999998886 788888874
No 4
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.49 E-value=1.6e+02 Score=27.68 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=46.5
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHhhhhcchhhHHHHHHHhcc-CC-----CHHHHHHHHHHHHHHHHHHhcCCChhH
Q 006084 523 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRLQT-AK-----SIDEVIQHHDFFLDKCLRECLLHLPDL 592 (662)
Q Consensus 523 ~~~~~~~Lr~~----m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l~~-a~-----~ld~li~~H~~fL~~i~~~c~L~~~~l 592 (662)
.+.+.+.|..+ +-.+.+.+..|+..... ...+.... +. =|++++..|+. .+.+.+.||-.++.+
T Consensus 302 ~L~~lY~L~~rv~~~~~~l~~~~~~~I~~~G~-----~~i~~~~~~~~~~~~~~V~~ll~l~~~-~~~ii~~~F~~d~~f 375 (394)
T d1ldja2 302 DLGRMYNLVSRIQDGLGELKKLLETHIHNQGL-----AAIEKCGEAALNDPKMYVQTVLDVHKK-YNALVMSAFNNDAGF 375 (394)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-----HHHHHHTTSGGGCHHHHHHHHHHHHHH-HHHHHHTTTTTCHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-----HHHHhhhhcccCChHHHHHHHHHHHHH-HHHHHHHHcCCCHHH
Confidence 45555555443 35556667777655432 22222221 11 27889999986 567788999999998
Q ss_pred HHHHHHHHHHH
Q 006084 593 LKKVERLKSLC 603 (662)
Q Consensus 593 ~~~l~~ll~~c 603 (662)
.+++.+-+.-+
T Consensus 376 ~~~l~~af~~f 386 (394)
T d1ldja2 376 VAALDKACGRF 386 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888775543
No 5
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=15.12 E-value=1.2e+02 Score=23.37 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=27.3
Q ss_pred cCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceec
Q 006084 215 AGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (662)
Q Consensus 215 ~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~ 249 (662)
.|.+..+..+...+........+.|++|+..|.+.
T Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~~r 69 (126)
T d1pb6a2 35 AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLA 69 (126)
T ss_dssp TTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 45555666677777777788888999999999875
No 6
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.30 E-value=2.7e+02 Score=21.05 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=37.3
Q ss_pred CCchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceec
Q 006084 197 NFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (662)
Q Consensus 197 ~~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~ 249 (662)
...|+.++-.+-..+ ..|+.....+..++...-.-+-.++++.+..|++.
T Consensus 23 ~p~~~~~~~~l~ae~---~~~p~l~~~~~~~~~~r~~~~~~il~rA~~RGEl~ 72 (123)
T d2id3a2 23 DPRQGRLFRALIAAS---LCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVP 72 (123)
T ss_dssp SHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CcchHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345666666554432 45677888888888888888889999999999984
No 7
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=9.78 E-value=2.7e+02 Score=20.11 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=32.8
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHH
Q 006084 560 RLQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYA 607 (662)
Q Consensus 560 ~l~~a~~ld~li~~H~~fL~~i~~~c~L~-~~~l~~~l~~ll~~c~~F~ 607 (662)
.|++--+.+||++.|..++..+ .++ .+++...+.=|+.+..-|.
T Consensus 37 ~iek~IsPEeIV~iHk~~l~el----~~~~~e~v~~Sfd~LlEVm~gyG 81 (84)
T d1w53a_ 37 TIEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHHHHHcC
Confidence 4566779999999999888764 444 4667788877777776653
No 8
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=9.37 E-value=70 Score=24.35 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=41.3
Q ss_pred CCCchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceecC
Q 006084 196 NNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 250 (662)
Q Consensus 196 ~~~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~D 250 (662)
...+||-+.+...+. ...|+.+++.+...+.....-+...|.+-...|++.+
T Consensus 22 ~~p~GCl~~~~~~E~---~~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~~ 73 (116)
T d2i10a2 22 GQPFGCMTVQAGLAS---GEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPA 73 (116)
T ss_dssp ----CCCCSSCBTTT---BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred CCCCCCHHHHhHhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 455788888777653 3578999999999999999999999999999999964
No 9
>d1knya1 a.24.16.1 (A:126-253) Kanamycin nucleotidyltransferase (KNTase), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=6.75 E-value=5.1e+02 Score=19.85 Aligned_cols=17 Identities=6% Similarity=0.239 Sum_probs=14.0
Q ss_pred HHHhHHHHHHHHHHHhh
Q 006084 229 QCASNAYLGILERWVYE 245 (662)
Q Consensus 229 ~~~~~py~~~l~~Wl~~ 245 (662)
..||+-|++-|..|..+
T Consensus 99 ~~~CE~~w~Gl~~w~a~ 115 (128)
T d1knya1 99 LESLENFWNGIQEWTER 115 (128)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35788999999999865
No 10
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.47 E-value=3.9e+02 Score=24.04 Aligned_cols=37 Identities=8% Similarity=0.240 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 006084 566 SIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 603 (662)
Q Consensus 566 ~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l~~ll~~c 603 (662)
=+++++..|+.| +.+...||-.++.+.+++.+-+.-.
T Consensus 307 ~V~~ll~l~~k~-~~li~~~F~~d~~f~~~l~~af~~~ 343 (347)
T d2hyec2 307 MVQDLLDFKDKV-DHVIEVCFQKNERFVNLMKESFETF 343 (347)
T ss_dssp HHHHHHHHHHHH-HHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 488999999875 5567789999999888887775543
Done!