BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006085
(662 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/641 (54%), Positives = 464/641 (72%), Gaps = 7/641 (1%)
Query: 21 RHPLDSLRPSEFTRVQTIVKTSYP--SNNLSFHYVGMDEPDKAVVYSWLSN-SKTKFPRR 77
+HPLD L EF VQTIV+ YP +N L+FHY+G+D+P+K V + ++ + PR+
Sbjct: 2 QHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRK 61
Query: 78 AIVIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVK 137
V+A N QTHEI+++L RSIVSD ++ G+GFP+L+++EQ L L Y PF SVK
Sbjct: 62 IFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVK 121
Query: 138 KRGLNISDVVCSASTVGWYGEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIEEMK 197
KRGLN+S++VCS+ T+GW+GE+K+ R ++ CF + T+N+++RPI GITIV D++ MK
Sbjct: 122 KRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCF-MKESTVNIYVRPITGITIVADLDLMK 180
Query: 198 VTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSSTR-PGFKINGNTVKWANWVF 256
+ EY+DR++ +P E TEY++SK PPFGP+ +S+ + + PGF+ING++V WANW F
Sbjct: 181 IVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKF 240
Query: 257 NVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWYHITYFDNGEFG 316
++GFD R G +IS ASIYD+ HK RRVLY+G+ISELF+PYQDP+E +Y T+FD+GEFG
Sbjct: 241 HIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFG 300
Query: 317 FGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPG 376
FGL+ V L DCP +A F+D Y S +GTP+ NA+C+FE++ G++MWRHTE +P
Sbjct: 301 FGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTENGIPN 359
Query: 377 H-VREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEYTYVDQI 435
+ E R EV+L+VR + TVGN D +IDWEFK SGSIK + LSG+LE+K + D+I
Sbjct: 360 ESIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEI 419
Query: 436 KEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPRKSYWTV 495
KED HG LV+ NSI I HDHF YYLD DIDG NSFEKT L T R + ++ RKSYWT
Sbjct: 420 KEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTT 479
Query: 496 EKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPMLMEDDYPQIR 555
E +TAKTE +A++ + P E +VNP+ KT +G+ VGYRL+P P+L EDDYPQIR
Sbjct: 480 ETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIR 539
Query: 556 AGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHA 615
FTNYNVWVT Y ++EK++GG YVD S GDDTL WT NREI N DIV+W+ +GIHH
Sbjct: 540 GAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHV 599
Query: 616 PCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIPPKHVQRP 656
P QEDFP+MP +S FELRPTNFFE NPVLK + P+ V P
Sbjct: 600 PAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWP 640
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/641 (54%), Positives = 464/641 (72%), Gaps = 7/641 (1%)
Query: 21 RHPLDSLRPSEFTRVQTIVKTSYP--SNNLSFHYVGMDEPDKAVVYSWLSN-SKTKFPRR 77
+HPLD L EF VQTIV+ YP +N L+FHY+G+D+P+K V + ++ + PR+
Sbjct: 7 QHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRK 66
Query: 78 AIVIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVK 137
V+A N QTHEI+++L RSIVSD ++ G+GFP+L+++EQ L L Y PF SVK
Sbjct: 67 IFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVK 126
Query: 138 KRGLNISDVVCSASTVGWYGEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIEEMK 197
KRGLN+S++VCS+ T+GW+GE+K+ R ++ CF + T+N+++RPI GITIV D++ MK
Sbjct: 127 KRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCF-MKESTVNIYVRPITGITIVADLDLMK 185
Query: 198 VTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSSTR-PGFKINGNTVKWANWVF 256
+ EY+DR++ +P E TEY++SK PPFGP+ +S+ + + PGF+ING++V WANW F
Sbjct: 186 IVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKF 245
Query: 257 NVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWYHITYFDNGEFG 316
++GFD R G +IS ASIYD+ HK RRVLY+G+ISELF+PYQDP+E +Y T+FD+GEFG
Sbjct: 246 HIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFG 305
Query: 317 FGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPG 376
FGL+ V L DCP +A F+D Y S +GTP+ NA+C+FE++ G++MWRHTE +P
Sbjct: 306 FGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTENGIPN 364
Query: 377 H-VREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEYTYVDQI 435
+ E R EV+L+VR + TVGN D +IDWEFK SGSIK + LSG+LE+K + D+I
Sbjct: 365 ESIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEI 424
Query: 436 KEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPRKSYWTV 495
KED HG LV+ NSI I HDHF YYLD DIDG NSFEKT L T R + ++ RKSYWT
Sbjct: 425 KEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTT 484
Query: 496 EKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPMLMEDDYPQIR 555
E +TAKTE +A++ + P E +VNP+ KT +G+ VGYRL+P P+L EDDYPQIR
Sbjct: 485 ETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIR 544
Query: 556 AGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHA 615
FTNYNVWVT Y ++EK++GG YVD S GDDTL WT NREI N DIV+W+ +GIHH
Sbjct: 545 GAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHV 604
Query: 616 PCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIPPKHVQRP 656
P QEDFP+MP +S FELRPTNFFE NPVLK + P+ V P
Sbjct: 605 PAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWP 645
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 328 bits (841), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 214/645 (33%), Positives = 331/645 (51%), Gaps = 33/645 (5%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYP-SNNLSFHYVGMDEPDKAVVYSW-LSNSKTKFPRRAI 79
HPL++L E + IVK S N F + + PDK V+++ L N PR+A
Sbjct: 94 HPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKAD 153
Query: 80 VIARHNHQTHEIIVDLSKRSIVS-DKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKK 138
VI E +VDL ++S + HG ++ L++ + ++ E F A+VKK
Sbjct: 154 VIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKK 211
Query: 139 RGL-NISDVVCSASTVGWY----GEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDI 193
RG+ + V+ + TVG++ G K+ R+LK Y D G N + PIE + VVD+
Sbjct: 212 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV-ISYLDVGDGNYWAHPIENLVAVVDL 270
Query: 194 EEMKVTEYNDREVAPIP-KPEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVKWA 252
E+ K+ + + V P+P P + R ++ P P + I G+ + W
Sbjct: 271 EQKKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWR 326
Query: 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWYHITYFDN 312
NW F++ ++RVG +IST + Y+ N K R+V+Y G + + +PY DP GWY Y D+
Sbjct: 327 NWDFHLSMNSRVGPMISTVT-YNDNGTK-RKVMYEGSLGGMIVPYGDPDIGWYFKAYLDS 384
Query: 313 GEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEA 372
G++G G P+ R D P+NAV ++ A G P++ P A+ +FER+AG ++H E
Sbjct: 385 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 443
Query: 373 EMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEY-TY 431
P E R LVVR ++TVGNYDYI DW F +G+I + G +G+ VK V+ T
Sbjct: 444 GQPNVSTERR---ELVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTM 500
Query: 432 VDQIKED--QHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 489
D+ +D ++GTL+ N + H H N+ LDLD+DG NS V + NT PR
Sbjct: 501 HDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 559
Query: 490 KSYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGS------IIG 543
S V + E +A D + L NP+K+ ++G+PV Y+++P + G
Sbjct: 560 TSTMQVNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKG 618
Query: 544 PMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTD 603
D++ R F + +WVT Y E++ G Y ++S D L Q++ N ++NTD
Sbjct: 619 AQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTD 678
Query: 604 IVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVI 648
V+W T G H E++P+MPT L+P NFF+ P L +
Sbjct: 679 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 723
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 325 bits (834), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 213/645 (33%), Positives = 330/645 (51%), Gaps = 33/645 (5%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYP-SNNLSFHYVGMDEPDKAVVYSW-LSNSKTKFPRRAI 79
HPL++L E + IVK S N F + + PDK V+++ L N PR+A
Sbjct: 94 HPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKAD 153
Query: 80 VIARHNHQTHEIIVDLSKRSIVS-DKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKK 138
VI E +VDL ++S + HG ++ L++ + ++ E F A+VKK
Sbjct: 154 VIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKK 211
Query: 139 RGL-NISDVVCSASTVGWY----GEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDI 193
RG+ + V+ + TVG++ G K+ R+LK Y D G N + PIE + VVD+
Sbjct: 212 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV-ISYLDVGDGNYWAHPIENLVAVVDL 270
Query: 194 EEMKVTEYNDREVAPIP-KPEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVKWA 252
E+ K+ + + V P+P P + R ++ P P + I G+ + W
Sbjct: 271 EQKKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWR 326
Query: 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWYHITYFDN 312
NW F++ ++RVG +IST + Y+ N K R+V+Y G + + +PY DP GWY Y D+
Sbjct: 327 NWDFHLSMNSRVGPMISTVT-YNDNGTK-RKVMYEGSLGGMIVPYGDPDIGWYFKAYLDS 384
Query: 313 GEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEA 372
G++G G P+ R D P+NAV ++ A G P++ P A+ +FER+AG ++H E
Sbjct: 385 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 443
Query: 373 EMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEY-TY 431
P E R LVVR ++TVGN DYI DW F +G+I + G +G+ VK V+ T
Sbjct: 444 GQPNVSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTM 500
Query: 432 VDQIKED--QHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 489
D+ +D ++GTL+ N + H H N+ LDLD+DG NS V + NT PR
Sbjct: 501 HDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 559
Query: 490 KSYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGS------IIG 543
S V + E +A D + L NP+K+ ++G+PV Y+++P + G
Sbjct: 560 TSTMQVNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKG 618
Query: 544 PMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTD 603
D++ R F + +WVT Y E++ G Y ++S D L Q++ N ++NTD
Sbjct: 619 AQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTD 678
Query: 604 IVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVI 648
V+W T G H E++P+MPT L+P NFF+ P L +
Sbjct: 679 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 723
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 324 bits (830), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 212/645 (32%), Positives = 330/645 (51%), Gaps = 33/645 (5%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYP-SNNLSFHYVGMDEPDKAVVYSW-LSNSKTKFPRRAI 79
HPL++L E + IVK S N F + + PDK V+++ L N PR+A
Sbjct: 94 HPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKAD 153
Query: 80 VIARHNHQTHEIIVDLSKRSIVS-DKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKK 138
VI E +VDL ++S + HG ++ L++ + ++ E F A+VKK
Sbjct: 154 VIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKK 211
Query: 139 RGL-NISDVVCSASTVGWY----GEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDI 193
RG+ + V+ + TVG++ G K+ R+LK Y D G N + PIE + VVD+
Sbjct: 212 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV-ISYLDVGDGNYWAHPIENLVAVVDL 270
Query: 194 EEMKVTEYNDREVAPIP-KPEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVKWA 252
E+ K+ + + V P+P P + R ++ P P + I G+ + W
Sbjct: 271 EQKKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWR 326
Query: 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWYHITYFDN 312
NW F++ ++RVG +IST + Y+ N K R+V+Y G + + +P+ DP GWY Y D+
Sbjct: 327 NWDFHLSMNSRVGPMISTVT-YNDNGTK-RKVMYEGSLGGMIVPFGDPDIGWYFKAYLDS 384
Query: 313 GEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEA 372
G++G G P+ R D P+NAV ++ A G P++ P A+ +FER+AG ++H E
Sbjct: 385 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 443
Query: 373 EMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEY-TY 431
P E R LVVR ++TVGN DYI DW F +G+I + G +G+ VK V+ T
Sbjct: 444 GQPNVSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTM 500
Query: 432 VDQIKED--QHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 489
D+ +D ++GTL+ N + H H N+ LDLD+DG NS V + NT PR
Sbjct: 501 HDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 559
Query: 490 KSYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGS------IIG 543
S V + E +A D + L NP+K+ ++G+PV Y+++P + G
Sbjct: 560 TSTMQVNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKG 618
Query: 544 PMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTD 603
D++ R F + +WVT Y E++ G Y ++S D L Q++ N ++NTD
Sbjct: 619 AQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTD 678
Query: 604 IVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVI 648
V+W T G H E++P+MPT L+P NFF+ P L +
Sbjct: 679 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 723
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 323 bits (828), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 212/645 (32%), Positives = 330/645 (51%), Gaps = 33/645 (5%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYP-SNNLSFHYVGMDEPDKAVVYSW-LSNSKTKFPRRAI 79
HPL++L E + IVK S N F + + PDK V+++ L N PR+A
Sbjct: 89 HPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKAD 148
Query: 80 VIARHNHQTHEIIVDLSKRSIVS-DKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKK 138
VI E +VDL ++S + HG ++ L++ + ++ E F A+VKK
Sbjct: 149 VIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKK 206
Query: 139 RGL-NISDVVCSASTVGWY----GEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDI 193
RG+ + V+ + TVG++ G K+ R+LK Y D G N + PIE + VVD+
Sbjct: 207 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV-ISYLDVGDGNYWAHPIENLVAVVDL 265
Query: 194 EEMKVTEYNDREVAPIP-KPEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVKWA 252
E+ K+ + + V P+P P + R ++ P P + I G+ + W
Sbjct: 266 EQKKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWR 321
Query: 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWYHITYFDN 312
NW F++ ++RVG +IST + Y+ N K R+V+Y G + + +PY DP GWY Y ++
Sbjct: 322 NWDFHLSMNSRVGPMISTVT-YNDNGTK-RKVMYEGSLGGMIVPYGDPDIGWYFKAYLES 379
Query: 313 GEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEA 372
G++G G P+ R D P+NAV ++ A G P++ P A+ +FER+AG ++H E
Sbjct: 380 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 438
Query: 373 EMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEY-TY 431
P E R LVVR ++TVGN DYI DW F +G+I + G +G+ VK V+ T
Sbjct: 439 GQPNVSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTM 495
Query: 432 VDQIKED--QHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 489
D+ +D ++GTL+ N + H H N+ LDLD+DG NS V + NT PR
Sbjct: 496 HDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 554
Query: 490 KSYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGS------IIG 543
S V + E +A D + L NP+K+ ++G+PV Y+++P + G
Sbjct: 555 TSTMQVNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKG 613
Query: 544 PMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTD 603
D++ R F + +WVT Y E++ G Y ++S D L Q++ N ++NTD
Sbjct: 614 AQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTD 673
Query: 604 IVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVI 648
V+W T G H E++P+MPT L+P NFF+ P L +
Sbjct: 674 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 718
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 323 bits (828), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 212/645 (32%), Positives = 330/645 (51%), Gaps = 33/645 (5%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYP-SNNLSFHYVGMDEPDKAVVYSW-LSNSKTKFPRRAI 79
HPL++L E + IVK S N F + + PDK V+++ L N PR+A
Sbjct: 89 HPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKAD 148
Query: 80 VIARHNHQTHEIIVDLSKRSIVS-DKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKK 138
VI E +VDL ++S + HG ++ L++ + ++ E F A+VKK
Sbjct: 149 VIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKK 206
Query: 139 RGL-NISDVVCSASTVGWY----GEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDI 193
RG+ + V+ + TVG++ G K+ R+LK Y D G N + PIE + VVD+
Sbjct: 207 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV-ISYLDVGDGNYWAHPIENLVAVVDL 265
Query: 194 EEMKVTEYNDREVAPIP-KPEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVKWA 252
E+ K+ + + V P+P P + R ++ P P + I G+ + W
Sbjct: 266 EQKKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWR 321
Query: 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWYHITYFDN 312
NW F++ ++RVG +IST + Y+ N K R+V+Y G + + +PY DP GWY Y ++
Sbjct: 322 NWDFHLSMNSRVGPMISTVT-YNDNGTK-RKVMYEGSLGGMIVPYGDPDIGWYFKAYLNS 379
Query: 313 GEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEA 372
G++G G P+ R D P+NAV ++ A G P++ P A+ +FER+AG ++H E
Sbjct: 380 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 438
Query: 373 EMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEY-TY 431
P E R LVVR ++TVGN DYI DW F +G+I + G +G+ VK V+ T
Sbjct: 439 GQPNVSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTM 495
Query: 432 VDQIKED--QHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 489
D+ +D ++GTL+ N + H H N+ LDLD+DG NS V + NT PR
Sbjct: 496 HDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 554
Query: 490 KSYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGS------IIG 543
S V + E +A D + L NP+K+ ++G+PV Y+++P + G
Sbjct: 555 TSTMQVNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKG 613
Query: 544 PMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTD 603
D++ R F + +WVT Y E++ G Y ++S D L Q++ N ++NTD
Sbjct: 614 AQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTD 673
Query: 604 IVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVI 648
V+W T G H E++P+MPT L+P NFF+ P L +
Sbjct: 674 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 718
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 322 bits (826), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 212/645 (32%), Positives = 329/645 (51%), Gaps = 33/645 (5%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYP-SNNLSFHYVGMDEPDKAVVYSW-LSNSKTKFPRRAI 79
HPL++L E + IVK S N F + + PDK V+++ L N PR+A
Sbjct: 89 HPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKAD 148
Query: 80 VIARHNHQTHEIIVDLSKRSIVS-DKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKK 138
VI E +VDL ++S + HG ++ L++ + ++ E F A+VKK
Sbjct: 149 VIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKK 206
Query: 139 RGL-NISDVVCSASTVGWY----GEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDI 193
RG+ + V+ + TVG++ G K+ R+LK Y D G N + PIE + VVD+
Sbjct: 207 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV-ISYLDVGDGNYWAHPIENLVAVVDL 265
Query: 194 EEMKVTEYNDREVAPIP-KPEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVKWA 252
E+ K+ + + V P+P P + R ++ P P + I G+ + W
Sbjct: 266 EQKKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWR 321
Query: 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWYHITYFDN 312
NW F++ ++RVG +IST + Y+ N K R+V+Y G + + +PY DP GWY Y +
Sbjct: 322 NWDFHLSMNSRVGPMISTVT-YNDNGTK-RKVMYEGSLGGMIVPYGDPDIGWYFKAYLAS 379
Query: 313 GEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEA 372
G++G G P+ R D P+NAV ++ A G P++ P A+ +FER+AG ++H E
Sbjct: 380 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 438
Query: 373 EMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEY-TY 431
P E R LVVR ++TVGN DYI DW F +G+I + G +G+ VK V+ T
Sbjct: 439 GQPNVSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTM 495
Query: 432 VDQIKED--QHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 489
D+ +D ++GTL+ N + H H N+ LDLD+DG NS V + NT PR
Sbjct: 496 HDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 554
Query: 490 KSYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGS------IIG 543
S V + E +A D + L NP+K+ ++G+PV Y+++P + G
Sbjct: 555 TSTMQVNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKG 613
Query: 544 PMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTD 603
D++ R F + +WVT Y E++ G Y ++S D L Q++ N ++NTD
Sbjct: 614 AQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTD 673
Query: 604 IVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVI 648
V+W T G H E++P+MPT L+P NFF+ P L +
Sbjct: 674 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 718
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 228 bits (582), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 176/648 (27%), Positives = 300/648 (46%), Gaps = 40/648 (6%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 GWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHA 362
YFD GE+ G A LE DC + ++ + G P + N +C+ E
Sbjct: 290 IRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 363 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 422
G ++ +H++ + + R +V+ T+GNYDY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 423 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 482
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 483 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 541
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 542 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 599
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 600 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 647
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 226 bits (575), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 175/648 (27%), Positives = 299/648 (46%), Gaps = 40/648 (6%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 1 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 52
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 53 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 110
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 111 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 170
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 171 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 229
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 230 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 287
Query: 303 GWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHA 362
YFD GE+ G A LE DC + ++ + G P + N +C+ E
Sbjct: 288 IRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 347
Query: 363 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 422
G ++ +H++ + + R +V+ T+GN DY W G+I+ +GV+
Sbjct: 348 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVV 404
Query: 423 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 482
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 405 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 457
Query: 483 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 541
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 458 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 516
Query: 542 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 599
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 517 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 575
Query: 600 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 647
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 576 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 623
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 226 bits (575), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 175/648 (27%), Positives = 299/648 (46%), Gaps = 40/648 (6%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 GWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHA 362
YFD GE+ G A LE DC + ++ + G P + N +C+ E
Sbjct: 290 IRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 363 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 422
G ++ +H++ + + R +V+ T+GN DY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 423 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 482
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 483 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 541
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 542 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 599
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 600 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 647
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 225 bits (573), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 175/648 (27%), Positives = 299/648 (46%), Gaps = 40/648 (6%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 GWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHA 362
YFD GE+ G A LE DC + ++ + G P + N +C+ E
Sbjct: 290 IRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 363 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 422
G ++ +H++ + + R +V+ T+GN DY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 423 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 482
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 483 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 541
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 542 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 599
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 600 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 647
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 225 bits (573), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 175/648 (27%), Positives = 299/648 (46%), Gaps = 40/648 (6%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 GWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHA 362
YFD GE+ G A LE DC + ++ + G P + N +C+ E
Sbjct: 290 IRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 363 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 422
G ++ +H++ + + R +V+ T+GNYDY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 423 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 482
D I + +A A H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQAIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 483 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 541
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 542 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 599
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 600 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 647
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 174/648 (26%), Positives = 298/648 (45%), Gaps = 40/648 (6%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 GWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHA 362
YF GE+ G A LE DC + ++ + G P + N +C+ E
Sbjct: 290 IRSWQNYFKTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 363 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 422
G ++ +H++ + + R +V+ T+GN DY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 423 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 482
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 483 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 541
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 542 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 599
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 600 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 647
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 223 bits (567), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 174/648 (26%), Positives = 298/648 (45%), Gaps = 40/648 (6%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 GWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHA 362
YF GE+ G A LE DC + ++ + G P + N +C+ E
Sbjct: 290 IRSWQNYFATGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 363 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 422
G ++ +H++ + + R +V+ T+GN DY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 423 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 482
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 483 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 541
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 542 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 599
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 600 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 647
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 174/648 (26%), Positives = 298/648 (45%), Gaps = 40/648 (6%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 GWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHA 362
YFD GE+ G A LE DC + ++ + G P + N +C+ E
Sbjct: 290 IRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 363 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 422
G ++ +H++ + + R +V+ T+GN DY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 423 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 482
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 483 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 541
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 542 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 599
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 600 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 647
+ DIV+W+T G+ P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTAFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 179/654 (27%), Positives = 291/654 (44%), Gaps = 43/654 (6%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--I 79
HPLD L +E VK+ + +SF+ V + EP + W PR A +
Sbjct: 7 HPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYV 66
Query: 80 VIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKR 139
++ E +VDL+ S++ + P+LT+E+ + ++
Sbjct: 67 ILEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLS 125
Query: 140 GL---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIE 194
G+ + V C T+G Y E+ KR+ + +Y + + P++ +VD E
Sbjct: 126 GIPANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTE 183
Query: 195 EMKVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFK 243
E KV + P + + ++++ + P P P +N T FK
Sbjct: 184 EKKVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFK 237
Query: 244 INGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEG 303
+ GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +PY P
Sbjct: 238 MTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPYGSPEFP 295
Query: 304 WYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAG 363
D GE+G G PL DC ++D +F+ + G P+ NAVCI E G
Sbjct: 296 HQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG 355
Query: 364 DVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLE 423
++++H++ V LVV + T NY+Y + W F G+I++ + L+G+L
Sbjct: 356 -LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILN 414
Query: 424 VKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNT 483
Y D + GT V N A NH H + +D IDG NS +
Sbjct: 415 T----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP 470
Query: 484 NVNTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLLP 538
+ +P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 471 -LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVS 529
Query: 539 GSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-DG 595
+ E RA + +++V V PYK + Y G++V Q GD + +W DG
Sbjct: 530 TQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDG 589
Query: 596 NREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIP 649
+ I+NTDI+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 590 SENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 643
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
Length = 692
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 179/654 (27%), Positives = 291/654 (44%), Gaps = 43/654 (6%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--I 79
HPLD L +E VK+ + +SF+ V + EP + W PR A +
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYV 82
Query: 80 VIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKR 139
++ E +VDL+ S++ + P+LT+E+ + ++
Sbjct: 83 ILEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLS 141
Query: 140 GL---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIE 194
G+ + V C T+G Y E+ KR+ + +Y + + P++ +VD E
Sbjct: 142 GIPANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTE 199
Query: 195 EMKVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFK 243
E KV + P + + ++++ + P P P +N T FK
Sbjct: 200 EKKVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFK 253
Query: 244 INGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEG 303
+ GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +PY P
Sbjct: 254 MTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPYGSPEFP 311
Query: 304 WYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAG 363
D GE+G G PL DC ++D +F+ + G P+ NAVCI E G
Sbjct: 312 HQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG 371
Query: 364 DVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLE 423
++++H++ V LVV + T NY+Y + W F G+I++ + L+G+L
Sbjct: 372 -LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILN 430
Query: 424 VKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNT 483
Y D + GT V N A NH H + +D IDG NS +
Sbjct: 431 T----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP 486
Query: 484 NVNTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLLP 538
+ +P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 487 -LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVS 545
Query: 539 GSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-DG 595
+ E RA + +++V V PYK + Y G++V Q GD + +W DG
Sbjct: 546 TQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDG 605
Query: 596 NREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIP 649
+ I+NTDI+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 606 SENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 659
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 178/654 (27%), Positives = 290/654 (44%), Gaps = 43/654 (6%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--I 79
HPLD L +E VK+ + +SF+ V + EP + W PR A +
Sbjct: 6 HPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYV 65
Query: 80 VIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKR 139
++ E +VDL+ S++ + P+LT+E+ + ++
Sbjct: 66 ILEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLS 124
Query: 140 GL---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIE 194
G+ + V C T+G Y E+ KR+ + +Y + + P++ +VD E
Sbjct: 125 GIPANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTE 182
Query: 195 EMKVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFK 243
E KV + P + + ++++ + P P P +N T FK
Sbjct: 183 EKKVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFK 236
Query: 244 INGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEG 303
+ GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +PY P
Sbjct: 237 MTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPYGSPEFP 294
Query: 304 WYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAG 363
D GE+G G PL DC ++D +F+ + G P+ NAVCI E G
Sbjct: 295 HQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG 354
Query: 364 DVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLE 423
++++H++ V LVV + T N +Y + W F G+I++ + L+G+L
Sbjct: 355 -LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILN 413
Query: 424 VKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNT 483
Y D + GT V N A NH H + +D IDG NS +
Sbjct: 414 T----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP 469
Query: 484 NVNTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLLP 538
+ +P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 470 -LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVS 528
Query: 539 GSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-DG 595
+ E RA + +++V V PYK + Y G++V Q GD + +W DG
Sbjct: 529 TQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDG 588
Query: 596 NREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIP 649
+ I+NTDI+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 589 SENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 642
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 177/654 (27%), Positives = 289/654 (44%), Gaps = 43/654 (6%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--I 79
HPLD L +E VK+ + +SF+ V + EP + W PR A +
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYV 82
Query: 80 VIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKR 139
++ E +VDL+ S++ + P+LT+E+ + ++
Sbjct: 83 ILEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLS 141
Query: 140 GL---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIE 194
G+ + V C T+G Y E+ KR+ + +Y + + P++ +VD E
Sbjct: 142 GIPANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTE 199
Query: 195 EMKVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFK 243
E KV + P + + ++++ + P P P +N T FK
Sbjct: 200 EKKVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFK 253
Query: 244 INGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEG 303
+ GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +P P
Sbjct: 254 MTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPAGSPEFP 311
Query: 304 WYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAG 363
D GE+G G PL DC ++D +F+ + G P+ NAVCI E G
Sbjct: 312 HQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG 371
Query: 364 DVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLE 423
++++H++ V LVV + T N +Y + W F G+I++ + L+G+L
Sbjct: 372 -LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILN 430
Query: 424 VKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNT 483
Y D + GT V N A NH H + +D IDG NS +
Sbjct: 431 T----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP 486
Query: 484 NVNTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLLP 538
+ +P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 487 -LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVS 545
Query: 539 GSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-DG 595
+ E RA + +++V V PYK + Y G++V Q GD + +W DG
Sbjct: 546 TQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDG 605
Query: 596 NREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIP 649
+ I+NTDI+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 606 SENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 659
>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 176/652 (26%), Positives = 288/652 (44%), Gaps = 43/652 (6%)
Query: 24 LDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--IVI 81
LD L +E VK+ + +SF+ V + EP + W PR A +++
Sbjct: 13 LDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVIL 72
Query: 82 ARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGL 141
E +VDL+ S++ + P+LT+E+ + ++ G+
Sbjct: 73 EAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLSGI 131
Query: 142 ---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIEEM 196
+ V C T+G Y E+ KR+ + +Y + + P++ +VD EE
Sbjct: 132 PANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTEEK 189
Query: 197 KVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFKIN 245
KV + P + + ++++ + P P P +N T FK+
Sbjct: 190 KVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFKMT 243
Query: 246 GNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWY 305
GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +PY P
Sbjct: 244 GNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPYGSPEFPHQ 301
Query: 306 HITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDV 365
D GE+G G PL DC ++D +F+ + G P+ NAVCI E G +
Sbjct: 302 RKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-L 360
Query: 366 MWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVK 425
+++H++ V LVV + T N +Y + W F G+I++ + L+G+L
Sbjct: 361 LFKHSDFRDNFATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNT- 419
Query: 426 PVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNV 485
Y D + GT V N A NH H + +D IDG NS + +
Sbjct: 420 ---YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP-L 475
Query: 486 NTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLLPGS 540
+P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 476 GSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQ 535
Query: 541 IIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-DGNR 597
+ E RA + +++V V PYK + Y G++V Q GD + +W DG+
Sbjct: 536 CPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSE 595
Query: 598 EIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIP 649
I+NTDI+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 596 NIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 647
>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 208 bits (529), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 175/652 (26%), Positives = 287/652 (44%), Gaps = 43/652 (6%)
Query: 24 LDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--IVI 81
LD L +E VK+ + +SF+ V + EP + W PR A +++
Sbjct: 13 LDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVIL 72
Query: 82 ARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGL 141
E +VDL+ S++ + P+LT+E+ + ++ G+
Sbjct: 73 EAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLSGI 131
Query: 142 ---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIEEM 196
+ V C T+G Y E+ KR+ + +Y + + P++ +VD EE
Sbjct: 132 PANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTEEK 189
Query: 197 KVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFKIN 245
KV + P + + ++++ + P P P +N T FK+
Sbjct: 190 KVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFKMT 243
Query: 246 GNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWY 305
GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +PY P
Sbjct: 244 GNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPYGSPEFPHQ 301
Query: 306 HITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDV 365
D GE+G G PL DC ++D +F+ + G P+ NAVCI E G +
Sbjct: 302 RKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-L 360
Query: 366 MWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVK 425
+++H++ V LVV + T N +Y + W F G+I++ + L+G+L
Sbjct: 361 LFKHSDFRDNFATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNT- 419
Query: 426 PVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNV 485
Y D + GT V N A NH H + +D IDG NS + +
Sbjct: 420 ---YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP-L 475
Query: 486 NTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLLPGS 540
+P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 476 GSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQ 535
Query: 541 IIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-DGNR 597
+ E RA + +++V V PYK + Y G++V Q GD + +W DG+
Sbjct: 536 CPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSE 595
Query: 598 EIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIP 649
I+NTDI+ ++T GI H P EDFP+ P LRP +FF NP L + P
Sbjct: 596 NIDNTDILFFHTFGITHFPAPEDFPLXPAEPITLMLRPRHFFTENPGLDIQP 647
>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
Length = 657
Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 177/656 (26%), Positives = 290/656 (44%), Gaps = 45/656 (6%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--I 79
HPLD L +E VK+ + +SF+ V + EP + W PR A +
Sbjct: 6 HPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYV 65
Query: 80 VIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKR 139
++ E +VDL+ S++ + P+LT+E+ + ++
Sbjct: 66 ILEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLS 124
Query: 140 GL---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIE 194
G+ + V C T+G Y E+ KR+ + +Y + + P++ +VD E
Sbjct: 125 GIPANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTE 182
Query: 195 EMKVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFK 243
E KV + P + + ++++ + P P P +N T FK
Sbjct: 183 EKKVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFK 236
Query: 244 INGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEG 303
+ GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +P+ P
Sbjct: 237 MTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPFGSPEFP 294
Query: 304 WYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAG 363
D GE+G G PL DC ++D +F+ + G P+ NAVCI E G
Sbjct: 295 HQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG 354
Query: 364 DVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGN-YDYIIDWEFKPSGSIKMGVGLSGVL 422
++++H++ V LVV + T N +Y + W F G+I++ + L+G+L
Sbjct: 355 -LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIRLTGIL 413
Query: 423 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 482
Y D + GT V N A NH H + +D IDG NS +
Sbjct: 414 NT----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPY 469
Query: 483 TNVNTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLL 537
+ +P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 470 P-LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV 528
Query: 538 PGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-D 594
+ E RA + +++V V PYK + Y G++V Q GD + +W D
Sbjct: 529 STQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGD 588
Query: 595 GNREIENTDIVLWYTMGIHHAPCQEDFPV-MPTVSCGFELRPTNFFEYNPVLKVIP 649
G+ I+NTDI+ ++T GI H P EDFP+ MP LRP +FF NP L + P
Sbjct: 589 GSENIDNTDILFFHTFGITHFPAPEDFPLXMPAEPITLMLRPRHFFTENPGLDIQP 644
>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
Length = 663
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 177/656 (26%), Positives = 290/656 (44%), Gaps = 45/656 (6%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--I 79
HPLD L +E VK+ + +SF+ V + EP + W PR A +
Sbjct: 9 HPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYV 68
Query: 80 VIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKR 139
++ E +VDL+ S++ + P+LT+E+ + ++
Sbjct: 69 ILEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLS 127
Query: 140 GL---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIE 194
G+ + V C T+G Y E+ KR+ + +Y + + P++ +VD E
Sbjct: 128 GIPANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTE 185
Query: 195 EMKVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFK 243
E KV + P + + ++++ + P P P +N T FK
Sbjct: 186 EKKVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFK 239
Query: 244 INGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEG 303
+ GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +P+ P
Sbjct: 240 MTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPFGSPEFP 297
Query: 304 WYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAG 363
D GE+G G PL DC ++D +F+ + G P+ NAVCI E G
Sbjct: 298 HQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG 357
Query: 364 DVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGN-YDYIIDWEFKPSGSIKMGVGLSGVL 422
++++H++ V LVV + T N +Y + W F G+I++ + L+G+L
Sbjct: 358 -LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIRLTGIL 416
Query: 423 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 482
Y D + GT V N A NH H + +D IDG NS +
Sbjct: 417 NT----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPY 472
Query: 483 TNVNTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLL 537
+ +P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 473 P-LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV 531
Query: 538 PGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-D 594
+ E RA + +++V V PYK + Y G++V Q GD + +W D
Sbjct: 532 STQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGD 591
Query: 595 GNREIENTDIVLWYTMGIHHAPCQEDFPV-MPTVSCGFELRPTNFFEYNPVLKVIP 649
G+ I+NTDI+ ++T GI H P EDFP+ MP LRP +FF NP L + P
Sbjct: 592 GSENIDNTDILFFHTFGITHFPAPEDFPLXMPAEPITLMLRPRHFFTENPGLDIQP 647
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
Length = 633
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 202/413 (48%), Gaps = 24/413 (5%)
Query: 240 PGFKINGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQD 299
P F ++G+ + W W F V + T+ +IYDI+ K R V+YR +SE+ +PY D
Sbjct: 236 PSFNVDGHKISWQGWEFFV-----IPTVREGFAIYDIHF-KGRSVVYRLSLSEMTVPYGD 289
Query: 300 PSEGWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFE 359
P ++ FD G+ GFG T L DC +MD + +G V PN VC+ E
Sbjct: 290 PRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCLHE 349
Query: 360 RHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLS 419
+ G ++++HT V R E VV+ +ATV N +Y+++ F +G I++ V +
Sbjct: 350 QDGG-LLYKHTNYRTNVPVIARRRE--FVVQTIATVANXEYMLNIIFDQAGEIRIHVRAT 406
Query: 420 GVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLV- 478
G+L P+ D+ GT V +A H H L++ +D +DGY N+ ++
Sbjct: 407 GILSTMPL-----DKDVTVPWGTNVGPRVMAAYHQHMLSFRIDPAVDGYENTVVFDDVIR 461
Query: 479 TRRNTNVNTPRKSYWTVEKETAKTEFEARLNLDTKPM---EFALVNPSKKTKIGH-PVGY 534
+NT +N + V T +T E ++ P + ++N +K I PV Y
Sbjct: 462 MEKNTKLNP-----YNVGFVTERTVVEKPGYVEQSPFTNRSYKIINENKINPISKKPVAY 516
Query: 535 RLLPGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTD 594
+++ + + ED Y RA F VWVT Y+ +E Y+ G + +QS D L W
Sbjct: 517 KIMMPARQMLLADEDSYNNKRAQFATQQVWVTKYRDNELYAAGEFTNQSQTDTGLGVWAR 576
Query: 595 GNREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 647
+ + N + V+W T+G H P EDFPVMP + L P FF+ NP L V
Sbjct: 577 RDENVRNDNPVVWATLGFTHIPRVEDFPVMPVEAHEIALVPFGFFDKNPALSV 629
>pdb|3HI7|A Chain A, Crystal Structure Of Human Diamine Oxidase
pdb|3HI7|B Chain B, Crystal Structure Of Human Diamine Oxidase
pdb|3HIG|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HIG|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HII|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3HII|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3K5T|A Chain A, Crystal Structure Of Human Diamine Oxidase In Space Group
C2221
pdb|3MPH|A Chain A, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
pdb|3MPH|B Chain B, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
Length = 731
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 130/444 (29%), Positives = 192/444 (43%), Gaps = 37/444 (8%)
Query: 212 PEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVKWANWVFNVGFDARVGTIISTA 271
P P +L P GPR F++ GN V + W F F R S++
Sbjct: 272 PSPIHVSGPRLVQPHGPR------------FRLEGNAVLYGGWSF--AFRLR-----SSS 312
Query: 272 SIYDINMH-KYRRVLYRGFISELFIPYQDPSEGWYHITYFDNGEFGFGLTAVPLERLNDC 330
+ +N+H R+ Y + E Y + Y D G +G G L DC
Sbjct: 313 GLQVLNVHFGGERIAYEVSVQEAVALYGGHTPAGMQTKYLDVG-WGLGSVTHELAPGIDC 371
Query: 331 PANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPGHVR---EVRPEVSL 387
P A F+D + PV P A+C+FE G + RH + G ++ +V L
Sbjct: 372 PETATFLDTFHYYDADDPVHYPRALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQV-L 430
Query: 388 VVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADN 447
V+R +TV N DYI D+ F P+G ++ + +G V YT + +HGT + +
Sbjct: 431 VLRTTSTVYNXDYIWDFIFYPNGVMEAKMHATGY--VHATFYT----PEGLRHGTRLHTH 484
Query: 448 SIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPRKSYW--TVEKETAKTEFE 505
I H H ++Y +DLD+ G NSF+ ++ TN +PR T+E+ E +
Sbjct: 485 LIGNIHTHLVHYRVDLDVAGTKNSFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQ 544
Query: 506 ARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPMLMEDDYPQIRAGFTNYNVWV 565
A K ++ L ++ GH YRL S+ +L + + Y + V
Sbjct: 545 AAFRFKRKLPKYLLFTSPQENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYPLAV 604
Query: 566 TPYKKSEKYSGGNYVDQSHGDDTLL--QWTDGNREIENTDIVLWYTMGIHHAPCQEDFP- 622
T Y++SE S Y D ++ Q+ N IEN D+V W T+G H P ED P
Sbjct: 605 TKYRESELCSSSIYHQNDPWDPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPN 664
Query: 623 -VMPTVSCGFELRPTNFFEYNPVL 645
P S GF LRP NFF +P L
Sbjct: 665 TATPGNSVGFLLRPFNFFPEDPSL 688
>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
Length = 746
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 115/413 (27%), Positives = 182/413 (44%), Gaps = 23/413 (5%)
Query: 240 PGFKINGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQD 299
P F + GN V + W F+ G A S ++D+ R+ Y + E Y
Sbjct: 304 PRFSVQGNRVASSLWTFSFGLGA-----FSGPRVFDVRFQG-ERLAYEISLQEAGAVYGG 357
Query: 300 PSEGWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFE 359
+ Y D+G FG G A PL R DCP A +MD +F + TP +A C+FE
Sbjct: 358 NTPAAMLTRYMDSG-FGMGYFATPLIRGVDCPYLATYMDWHFVVESQTPKTLHDAFCVFE 416
Query: 360 RHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLS 419
++ G + RH ++ H + LV R V+T+ N DY+ D F P+G+I++ + +
Sbjct: 417 QNKGLPLRRH-HSDFLSHYFGGVAQTVLVFRSVSTMLNXDYVWDMVFYPNGAIEVKLHAT 475
Query: 420 GVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVT 479
G + + + ++G V ++++ H H +Y +DLD+ G N +
Sbjct: 476 GYISSA---FLFG---AARRYGNQVGEHTLGPVHTHSAHYKVDLDVGGLENWVWAEDMAF 529
Query: 480 RRNTNVNTPRKSY--WTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLL 537
+P V ++ +TE +A L + + + K GHP GYR+
Sbjct: 530 VPTAIPWSPEHQIQRLQVTRKQLETEEQAAFPLGGASPRYLYLASKQSNKWGHPRGYRIQ 589
Query: 538 PGSIIGPMLMEDDYPQIRA-GFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTD-- 594
S G M + P RA + Y + +T K++E S + +Q+ + ++D
Sbjct: 590 TVSFAG-GPMPQNSPMERAFSWGRYQLAITQRKETEP-SSSSVFNQNDPWTPTVDFSDFI 647
Query: 595 GNREIENTDIVLWYTMGIHHAPCQEDFPVMPTV--SCGFELRPTNFFEYNPVL 645
N I D+V W T G H P ED P TV GF LRP NFF+ P +
Sbjct: 648 NNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQEPSM 700
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 181/410 (44%), Gaps = 21/410 (5%)
Query: 240 PGFKINGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQD 299
P F + G+ V + W F+ G A S I+D+ R++Y + E Y
Sbjct: 321 PRFSVQGSRVASSLWTFSFGLGA-----FSGPRIFDVRFQG-ERLVYEISLQEALAIYGG 374
Query: 300 PSEGWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFE 359
S Y D G FG G PL R DCP A ++D +F + P +A C+FE
Sbjct: 375 NSPAAMTTRYVDGG-FGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFE 433
Query: 360 RHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLS 419
++ G + RH +++ H E LVVR ++T+ N DY+ D F PSG+I++ +
Sbjct: 434 QNQGLPLRRH-HSDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIRFYAT 492
Query: 420 GVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVT 479
G + + + K +G V+++++ H H ++ +DLD+ G N +V
Sbjct: 493 GYISSA---FLFGATGK---YGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVF 546
Query: 480 RRNTNVNTPRKSY--WTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLL 537
+P V ++ + E +A + + + + + K GHP GYR+
Sbjct: 547 VPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQ 606
Query: 538 PGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTD--G 595
S G L ++ + Y + VT +K E+ S + +Q+ + ++D
Sbjct: 607 MLSFAGEPLPQNSSMARGFSWERYQLAVT-QRKEEEPSSSSVFNQNDPWAPTVDFSDFIN 665
Query: 596 NREIENTDIVLWYTMGIHHAPCQEDFPVMPTV--SCGFELRPTNFFEYNP 643
N I D+V W T G H P ED P TV GF LRP NFF+ +P
Sbjct: 666 NETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 715
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 181/410 (44%), Gaps = 21/410 (5%)
Query: 240 PGFKINGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQD 299
P F + G+ V + W F+ G A S I+D+ R++Y + E Y
Sbjct: 306 PRFSVQGSRVASSLWTFSFGLGA-----FSGPRIFDVRFQG-ERLVYEISLQEALAIYGG 359
Query: 300 PSEGWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFE 359
S Y D G FG G PL R DCP A ++D +F + P +A C+FE
Sbjct: 360 NSPAAMTTRYVDGG-FGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFE 418
Query: 360 RHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLS 419
++ G + RH +++ H E LVVR ++T+ N DY+ D F PSG+I++ +
Sbjct: 419 QNQGLPLRRH-HSDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIRFYAT 477
Query: 420 GVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVT 479
G + + + K +G V+++++ H H ++ +DLD+ G N +V
Sbjct: 478 GYISSA---FLFGATGK---YGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVF 531
Query: 480 RRNTNVNTPRKSY--WTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLL 537
+P V ++ + E +A + + + + + K GHP GYR+
Sbjct: 532 VPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQ 591
Query: 538 PGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTD--G 595
S G L ++ + Y + VT +K E+ S + +Q+ + ++D
Sbjct: 592 MLSFAGEPLPQNSSMARGFSWERYQLAVT-QRKEEEPSSSSVFNQNDPWAPTVDFSDFIN 650
Query: 596 NREIENTDIVLWYTMGIHHAPCQEDFPVMPTV--SCGFELRPTNFFEYNP 643
N I D+V W T G H P ED P TV GF LRP NFF+ +P
Sbjct: 651 NETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 700
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 181/410 (44%), Gaps = 21/410 (5%)
Query: 240 PGFKINGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQD 299
P F + G+ V + W F+ G A S I+D+ R++Y + E Y
Sbjct: 293 PRFSVQGSRVASSLWTFSFGLGA-----FSGPRIFDVRFQG-ERLVYEISLQEALAIYGG 346
Query: 300 PSEGWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFE 359
S Y D G FG G PL R DCP A ++D +F + P +A C+FE
Sbjct: 347 NSPAAMTTRYVDGG-FGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFE 405
Query: 360 RHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLS 419
++ G + RH +++ H E LVVR ++T+ N DY+ D F PSG+I++ +
Sbjct: 406 QNQGLPLRRH-HSDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIRFYAT 464
Query: 420 GVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVT 479
G + + + K +G V+++++ H H ++ +DLD+ G N +V
Sbjct: 465 GYISSA---FLFGATGK---YGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVF 518
Query: 480 RRNTNVNTPRKSY--WTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLL 537
+P V ++ + E +A + + + + + K GHP GYR+
Sbjct: 519 VPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQ 578
Query: 538 PGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTD--G 595
S G L ++ + Y + VT +K E+ S + +Q+ + ++D
Sbjct: 579 MLSFAGEPLPQNSSMARGFSWERYQLAVT-QRKEEEPSSSSVFNQNDPWAPTVDFSDFIN 637
Query: 596 NREIENTDIVLWYTMGIHHAPCQEDFPVMPTV--SCGFELRPTNFFEYNP 643
N I D+V W T G H P ED P TV GF LRP NFF+ +P
Sbjct: 638 NETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 687
>pdb|3PGB|A Chain A, Crystal Structure Of Aspergillus Nidulans Amine Oxidase
Length = 797
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 180/409 (44%), Gaps = 30/409 (7%)
Query: 249 VKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPY--QDPSEGWYH 306
V W ++ F + F+ G S++DI +K +RVLY + E Y DP +
Sbjct: 347 VTWMDFSFYIAFNRDTGL-----SLFDIK-YKGQRVLYELGLQEALAHYAANDPVQS--S 398
Query: 307 ITYFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVM 366
+ Y D+ +GFG A L + DCP+ A +++ F + T +++C+FE A M
Sbjct: 399 VAYLDS-YYGFGPYAFELLKGYDCPSYASYLNTSFYKDEETHTHV-DSLCLFEFDADYPM 456
Query: 367 WRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKP 426
RH+ +E V V +R V+T+GN DY+ + F G+I + V SG ++
Sbjct: 457 ARHSTSEF----VSVTKNVYFTLRSVSTIGNXDYMFSYNFHMDGTIGVEVRASGYIQSA- 511
Query: 427 VEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKL--VTRRNTN 484
Y +Q G + D+ HDH LN+ D DI G N+ E + VT++ +
Sbjct: 512 --YYANNQ----DFGYQIHDSLSGSMHDHVLNFKADFDILGPNNTIELVSVVPVTKQFSW 565
Query: 485 VNTPRKSYWTVEKETAKTEFEARLNLD-TKPMEFALVNPSKKTKIGHPVGYRLLPGSIIG 543
++ + + +E EARLN + +VN K K G P GYR+LP +
Sbjct: 566 SGNKTRNTMQLGRSFIHSEDEARLNWGFNGQTQLHVVNQDKPNKFGEPRGYRILPSAGTA 625
Query: 544 PMLMEDDYPQIRAG-FTNYNVWVTPYKKSEKYSGGNYVDQS-HGDDTLLQWTDGNREIEN 601
+ + + + A + Y+V VT E S Y Q H +
Sbjct: 626 HLTVLNSSNLVHAAHWAEYDVQVTRQHDFEPTSAHPYNSQDIHNPPVDFSTFFNGESLNQ 685
Query: 602 TDIVLWYTMGIHHAPCQEDFP--VMPTVSCGFELRPTNFFEYNPVLKVI 648
TD+V+W +G+HH P D P V T G P N+ +P + +
Sbjct: 686 TDLVVWLNLGMHHVPHTGDLPNTVFTTAHSGVAFTPLNYLPGDPSRETV 734
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 113/472 (23%), Positives = 190/472 (40%), Gaps = 67/472 (14%)
Query: 191 VDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVK 250
+D++ + T + API L PRL V R +
Sbjct: 296 IDVDNLDWTVIQRNDSAPI----------RHLDDRKSPRL--VEPEGRRWAYDGEEEYFS 343
Query: 251 WANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPY--QDPSEGWYHIT 308
W +W F + G S YDI K R++Y + EL Y DP + T
Sbjct: 344 WMDWGFYTSWSRDTGI-----SFYDITF-KGERIVYELSLQELIAEYGSDDP---FNQHT 394
Query: 309 YFDNGEFGFG--LTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPN---AVCIFERHAG 363
++ + +G G + VP DCPA A GYF + + N + C+FE
Sbjct: 395 FYSDISYGVGNRFSLVPGY---DCPATA----GYFTTDTFEYDEFYNRTLSYCVFENQED 447
Query: 364 DVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLE 423
+ RHT A + +L VR ++T+GN DY ++F G++++ V +G ++
Sbjct: 448 YSLLRHTGASYSA----ITQNPTLNVRFISTIGNXDYNFLYKFFLDGTLEVSVRAAGYIQ 503
Query: 424 VKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNT 483
Y + +G + D HDH LNY +DLD+ G N K + ++
Sbjct: 504 AG-----YWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASKYVM---KDV 555
Query: 484 NVN---TPRKSYWT--VEKETAKTEFEARLNLDTKPMEFALVNPSKKTK-IGHPVGYRLL 537
+V P Y T + +E + E +N L+ +++T G+P Y ++
Sbjct: 556 DVEYPWAPGTVYNTKQIAREVLEKEDFNGINWPENGQGILLIESAEETNSFGNPRAYNIM 615
Query: 538 PGSIIGPMLMEDDY--PQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGD-----DTLL 590
PG ++++ P+ + + N+++T +K E S + D + L
Sbjct: 616 PGGGGVHRIVKNSRSGPETQ-NWARSNLFLTKHKDEELRSSTALNTNALYDPPVNFNAFL 674
Query: 591 QWTDGNREIENTDIVLWYTMGIHHAPCQEDFP--VMPTVSCGFELRPTNFFE 640
+ ++ DIV W +G+HH P D P + T F L P N+F+
Sbjct: 675 D----DESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFD 722
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/437 (24%), Positives = 181/437 (41%), Gaps = 61/437 (13%)
Query: 228 PRLNSVATSSTRPGFKINGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYR 287
PRL V R + + W +W F + G S YDI K R++Y
Sbjct: 283 PRL--VEPEGRRWAYDGDEEYFSWMDWGFYTSWSRDTGI-----SFYDITF-KGERIVYE 334
Query: 288 GFISELFIPY--QDPSEGWYHITYFDNGEFGFG--LTAVPLERLNDCPANAVFMDGYFAS 343
+ EL Y DP + T++ + +G G + VP DCP+ A GYF +
Sbjct: 335 LSLQELIAEYGSDDP---FNQHTFYSDISYGVGNRFSLVPGY---DCPSTA----GYFTT 384
Query: 344 QDGTPVKTPN---AVCIFERHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDY 400
+ N + C+FE + RHT A + +L VR ++T+GN DY
Sbjct: 385 DTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSA----ITQNPTLNVRFISTIGNXDY 440
Query: 401 IIDWEFKPSGSIKMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYY 460
++F G++++ V +G ++ Y + +G + D HDH LNY
Sbjct: 441 NFLYKFFLDGTLEVSVRAAGYIQAG-----YWNPETSAPYGLKIHDVLSGSFHDHVLNYK 495
Query: 461 LDLDIDGYANSFEKTKLVTRRNTNVN---TPRKSYWTVEKETAKTEFEAR----LNLDTK 513
+DLD+ G N + ++ +V P Y T K+ A+ FE +N
Sbjct: 496 VDLDVGGTKN---RASQYVMKDVDVEYPWAPGTVYNT--KQIAREVFENEDFNGINWPEN 550
Query: 514 PMEFALVNPSKKTK-IGHPVGYRLLPGSIIGPMLMEDDY--PQIRAGFTNYNVWVTPYKK 570
L+ +++T G+P Y ++PG ++++ P+ + + N+++T +K
Sbjct: 551 GQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQ-NWARSNLFLTKHKD 609
Query: 571 SEKYSGGNYVDQSHGD-----DTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFP--V 623
+E S + D + L + ++ DIV W +G+HH P D P +
Sbjct: 610 TELRSSTALNTNALYDPPVNFNAFLD----DESLDGEDIVAWVNLGLHHLPNSNDLPNTI 665
Query: 624 MPTVSCGFELRPTNFFE 640
T F L P N+F+
Sbjct: 666 FSTAHASFMLTPFNYFD 682
>pdb|2XZM|I Chain I, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|I Chain I, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 145
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 31/112 (27%)
Query: 219 LSKLKP----PFGPRLNSVATSSTRPG---FKINGNTVKWANWVFNVGFDARVGTIISTA 271
+S+ KP FG + N+VA +S RPG K+NG+ + N I A
Sbjct: 1 MSQQKPQLVQTFGRKKNAVAVASVRPGKGLLKVNGSPIDMIN------------PQILQA 48
Query: 272 SIYD----------INMHKYRRVLYRGFISELFIPYQDPSEG--WYHITYFD 311
IY+ N+ RV G+ S+++ Q S+G YH Y D
Sbjct: 49 KIYEPILLLGQQKFANLDIRIRVRGSGYTSQVYAIRQALSKGIVAYHAKYVD 100
>pdb|3LDK|A Chain A, Crystal Structure Of A. Japonicus Cb05
pdb|3LDR|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With 1-Kestose
pdb|3LEM|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja Complex With Nystose
pdb|3LIG|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja
pdb|3LIH|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With Raffinose
Length = 634
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 287 RGFISELFIPYQDPSEGWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFM 337
G I + Y DPS G +H+ + +G+ G T L D N F+
Sbjct: 36 EGQIGDPCAHYTDPSTGLFHVGFLHDGDGIAGATTANLATYTDTSDNGSFL 86
>pdb|3LF7|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus
pdb|3LFI|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
pdb|3LFI|B Chain B, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
Length = 634
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 287 RGFISELFIPYQDPSEGWYHITYFDNGEFGFGLTAVPLERLNDCPANAVFM 337
G I + Y DPS G +H+ + +G+ G T L D N F+
Sbjct: 36 EGQIGDPCAHYTDPSTGLFHVGFLHDGDGIAGATTANLATYTDTSDNGSFL 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,793,583
Number of Sequences: 62578
Number of extensions: 987251
Number of successful extensions: 2083
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1839
Number of HSP's gapped (non-prelim): 39
length of query: 662
length of database: 14,973,337
effective HSP length: 105
effective length of query: 557
effective length of database: 8,402,647
effective search space: 4680274379
effective search space used: 4680274379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)