Query 006085
Match_columns 662
No_of_seqs 153 out of 721
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 18:08:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 9E-191 2E-195 1596.1 72.0 625 19-659 11-643 (647)
2 PLN02566 amine oxidase (copper 100.0 1E-186 3E-191 1562.6 70.8 616 21-646 21-646 (646)
3 PRK14696 tynA tyramine oxidase 100.0 2E-185 5E-190 1565.0 71.1 617 21-652 87-721 (721)
4 COG3733 TynA Cu2+-containing a 100.0 1E-182 2E-187 1454.3 58.5 616 21-652 29-654 (654)
5 KOG1186 Copper amine oxidase [ 100.0 5E-160 1E-164 1315.1 55.2 635 15-661 20-666 (670)
6 PF01179 Cu_amine_oxid: Copper 100.0 1E-141 3E-146 1155.5 35.5 407 232-652 1-413 (413)
7 PF02728 Cu_amine_oxidN3: Copp 99.9 2.8E-23 6E-28 186.4 9.3 98 112-210 1-101 (101)
8 PF02727 Cu_amine_oxidN2: Copp 99.8 8.7E-20 1.9E-24 159.3 3.3 83 22-105 1-85 (86)
9 PF04270 Strep_his_triad: Stre 45.1 12 0.00025 30.4 1.2 27 15-41 25-52 (53)
10 PF02728 Cu_amine_oxidN3: Copp 41.9 8.4 0.00018 34.6 -0.0 78 26-105 2-93 (101)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=9.5e-191 Score=1596.14 Aligned_cols=625 Identities=34% Similarity=0.590 Sum_probs=590.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCC-CCCeEEEEEEccCCChHHhhhhhccCCCCCCcEEEEEEEe--CCeEEEEEEEC
Q 006085 19 SKRHPLDSLRPSEFTRVQTIVKTSYP-SNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRAIVIARH--NHQTHEIIVDL 95 (662)
Q Consensus 19 ~~~HPldpLt~~Ei~~a~~il~~~~~-~~~~~f~~i~L~EP~K~~vl~~l~~~~~~p~R~A~vv~~~--~~~~~e~vV~L 95 (662)
..+|||||||++||++|++||+++.+ +..++|.+|+|+||+|++|++|+.+++ ++|+|+|++++ +++++|++|||
T Consensus 11 ~~~HPLdpLt~~Ei~~a~~iv~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~g~~--~~R~a~v~~~~~~~~~~~e~vVdL 88 (647)
T PRK11504 11 AVSHPLDPLTAAEIEAAVAILRAEGLLGESTRFVSIELAEPPKAEVLAFDPGDP--IDRRAFVVLYDRATGKTYEAVVSL 88 (647)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhccccCCceEEEEeeccCCCHHHHHhhhcCCC--CCcEEEEEEEECCCCcEEEEEEEC
Confidence 33799999999999999999999875 689999999999999999999999865 47999999996 67899999999
Q ss_pred CCCeEEEEEeecCCCcCCCCHHHHHHHHHHHhcChHHHHHHHhcCC-CCCceEEccccccccCCC-C-CeeEEEEEEEEe
Q 006085 96 SKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGL-NISDVVCSASTVGWYGEK-K-SKRVLKFPCFYT 172 (662)
Q Consensus 96 ~~~~v~~~~~~~~~~~p~~~~~e~~~~e~~~~~~p~~~~~~~~~gi-~~~~v~~d~w~~G~~~~~-~-~rRl~~~~~~~~ 172 (662)
++++|++++.++ ++||+++.+|+.+||++|++||+|+++|+|||| +++.|+||||++||++.. + +|||+|++||+|
T Consensus 89 ~~~~V~~~~~~~-~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~~~Rl~~~~~~~r 167 (647)
T PRK11504 89 TAGEVVSWEEIP-GVQPPILLEEFEECEEVVRADPRWQAALAKRGITDFDLVMVDPWSAGYFGEPEERGRRLARGLAFVR 167 (647)
T ss_pred CCCEEEEEEECC-CccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCcceEEEcCccccccCCCCcCCceEEEEEEEEe
Confidence 999999999887 679999999999999999999999999999999 588999999999988763 3 699999999999
Q ss_pred eCCCCCcccCcCCCeEEEEecCCcEEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCceeec-cCCeEEEeceEEEe
Q 006085 173 DQGTINMFLRPIEGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSS-TRPGFKINGNTVKW 251 (662)
Q Consensus 173 ~~~~~n~Ya~Pl~g~~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~~kP~~i~q-eG~sf~v~g~~V~W 251 (662)
.++++|+||||||||.++||++++||++|+|.+..|+|+.+ .+|+++.+. ++|+++||++|+| ||+||+|+||+|+|
T Consensus 168 ~~~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~-~~Y~~~~~~-~~r~dlkPl~i~QPeG~sF~v~g~~V~W 245 (647)
T PRK11504 168 ADPGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED-GNYDPEFIP-PLRTDLKPLEITQPEGPSFTVDGNEVEW 245 (647)
T ss_pred cCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-CCCChhHcc-ccccCCCCcceeCCCCCcEEEcCCEEEE
Confidence 88899999999999999999999999999999887888776 699988764 6899999999999 99999999999999
Q ss_pred eceEEEEEecCCcceEEEeeEEecCCCCeEeEEEEeeeceeEEeecCCCCCcccceeeeecCCCCcccCCcCCCCCCCCC
Q 006085 252 ANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWYHITYFDNGEFGFGLTAVPLERLNDCP 331 (662)
Q Consensus 252 ~~W~f~vgf~~reGl~L~dv~~~d~~~~~~r~I~yrlsl~Em~vpYgdp~~~~~~k~~~D~geyG~G~~a~~L~~G~DCp 331 (662)
|||+||||||+||||+||||+|+| .|+.||||||+|||||+||||||+++|++|+|||+||||+|.+||+|++|||||
T Consensus 246 ~~W~f~vgf~~reGlvL~dv~y~d--~g~~R~v~YrlslsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCp 323 (647)
T PRK11504 246 QKWSFRVGFNPREGLVLHQVSYDD--GGRERPILYRASLSEMVVPYGDPSPTHYWKNAFDAGEYGLGRLANSLELGCDCL 323 (647)
T ss_pred CCcEEEEecCCCCceEEEEEEEcC--CCCcceEEEEeeeeeeeeecCCCCcchhhceeeeccccCCcccccccccCCCCC
Confidence 999999999999999999999999 788899999999999999999999999999999999999999999999999999
Q ss_pred CccEEeeeEeecCCCceeEeCceEEEEEeeCCCceecccccCCCCceeecccceEEEEEEEEEecccceEEEEEEecCcc
Q 006085 332 ANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGS 411 (662)
Q Consensus 332 g~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~w~F~~DGt 411 (662)
|+|+|||+++++++|+|++++|||||||+| +|+||||++++++.. .+||+++||||+|+|||||||||+|+|||||+
T Consensus 324 g~i~Y~D~~~~~~~G~p~~~~naICihE~D-~GilwkHt~~r~~~~--~v~r~r~LVvr~I~TVgNYdYi~~w~F~qdG~ 400 (647)
T PRK11504 324 GEIRYFDAVLADSDGEPYTIKNAICMHEED-YGILWKHTDFRTGSA--EVRRSRRLVISFFATVGNYDYGFYWYFYQDGT 400 (647)
T ss_pred CCCEEcceEEecCCCCeEEecCEEEEeeec-CCeeeeeeccCCCcE--EEEeccEEEEEEEEecccccEEEEEEEecCce
Confidence 999999999999999999999999999999 789999999997655 23455599999999999999999999999999
Q ss_pred EEEEEEEeEEEeeecccccccCccccCCccceecCCccccccceEEEeeeecCCCCCCCceEEEEEEEecCCCCCCCcce
Q 006085 412 IKMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPRKS 491 (662)
Q Consensus 412 Ie~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~np~~~ 491 (662)
||++|+|||||+|++.. +.++.+||++|+|+++|++|||+|||||||||||.+|||+++|+++++.. ++||+++
T Consensus 401 Ie~eV~aTGil~t~~~~-----~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~~-~~np~g~ 474 (647)
T PRK11504 401 IEFEVKLTGIVFTAAVP-----PGETPPYGTLVAPGLYAPNHQHFFNARLDMDVDGPGNSVYEVNSVPVPMG-PDNPHGN 474 (647)
T ss_pred EEEEEEeeeEEEeeeeC-----CCccCCCcceecCCcccccceEEEEEEEcccccCCCceEEEEEeEecCCC-CCCccce
Confidence 99999999999986541 12356899999999999999999999999999999999999999999876 5899999
Q ss_pred eEEEEEEEeechhhhhhcCCC-CCcEEEEeCCCCCCCCCCceeEEEccCCcccCCCCCCChhccccccceeeeEEeecCC
Q 006085 492 YWTVEKETAKTEFEARLNLDT-KPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKK 570 (662)
Q Consensus 492 ~~~~~~~~l~tE~ea~~~~~~-~~r~~~ivN~~~~N~~G~p~gYrl~p~~~~~~~~~~~s~~~~ra~fa~~~lwVT~y~~ 570 (662)
+|++++++++||++|++++++ ++|+|+|+|++++|++|+|+||||+|+++++++++++|+..+||+||+||||||+|+|
T Consensus 475 ~~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d 554 (647)
T PRK11504 475 AFYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGGNPPLLADPGSSIRQRAGFATHHLWVTPYDP 554 (647)
T ss_pred EEEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCCCccccCCCCchhhhcchhhhCcEEEeccCC
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCcCCCCCCCChhccccCCCceeeCCcEEEEEeceecCCCCCCCCcccceeeeeEEEecCCCCCCCCCCCCCC
Q 006085 571 SEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIPP 650 (662)
Q Consensus 571 ~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvp~~ 650 (662)
+|+||||+|+||+.+++||++|+++||+|+|||||||||||+||+||+|||||||++++||+|||+|||++||+||+||+
T Consensus 555 ~E~~aag~y~~Qs~~~~gl~~~~~~~~~i~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NPaldvp~s 634 (647)
T PRK11504 555 DERYAAGDYPNQSAGGDGLPAYIAADRSIENTDVVLWYTFGITHVPRPEDWPVMPVDYAGFKLKPVGFFDRNPALDLPPE 634 (647)
T ss_pred CccccCCCCcccCCCCCCHHHHhcCCCccccCceEEEEecCcccCCChhhCCCCccceEEEEEEcCCCCCCCccccCCCc
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 006085 651 KHVQRPNYT 659 (662)
Q Consensus 651 ~~~~~~~~~ 659 (662)
.+..+|.|.
T Consensus 635 ~~~~~~~~~ 643 (647)
T PRK11504 635 PPAACHEHG 643 (647)
T ss_pred ccccccccC
Confidence 887666554
No 2
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=1.2e-186 Score=1562.62 Aligned_cols=616 Identities=57% Similarity=1.016 Sum_probs=576.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCC--CCeEEEEEEccCCChHHhhhhhccCC---CCCCcEEEEEEEeCCeEEEEEEEC
Q 006085 21 RHPLDSLRPSEFTRVQTIVKTSYPS--NNLSFHYVGMDEPDKAVVYSWLSNSK---TKFPRRAIVIARHNHQTHEIIVDL 95 (662)
Q Consensus 21 ~HPldpLt~~Ei~~a~~il~~~~~~--~~~~f~~i~L~EP~K~~vl~~l~~~~---~~p~R~A~vv~~~~~~~~e~vV~L 95 (662)
.|||||||++||++|++||+++.+. .+++|.+|+|+||+|++|++|+.++. +.|+|+|+|++..+++++|++|||
T Consensus 21 ~HPLdpLs~~Ei~~a~~iv~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~p~R~a~v~~~~~~~~~e~vVdl 100 (646)
T PLN02566 21 YHPLDPLNPQEINKIRLIVQKSHLGNLPNLTFHFLDLEEPEKRDVLKWLSSNPSNKSPPPRRAKVVVRAGGETYELIVDL 100 (646)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCCceEEEEEEccCCChHHHHhhhhcccCCCCCCCcEEEEEEecCCCEEEEEEEC
Confidence 5999999999999999999998753 57999999999999999999998764 246899998775678899999999
Q ss_pred CCCeEEEEEeecCCCcCCCCHHHHHHHHHHHhcChHHHHHHHhcCCCCCceEEccccccccCCCCCeeEEEEEEEEeeCC
Q 006085 96 SKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGLNISDVVCSASTVGWYGEKKSKRVLKFPCFYTDQG 175 (662)
Q Consensus 96 ~~~~v~~~~~~~~~~~p~~~~~e~~~~e~~~~~~p~~~~~~~~~gi~~~~v~~d~w~~G~~~~~~~rRl~~~~~~~~~~~ 175 (662)
++++|++++.+++.|||+++.||+.+||++|++||+|+|+|++|||+.+.|+||||++||++..++||++|++||+| ++
T Consensus 101 ~~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~~~V~~dpw~~G~~~~~~~~R~~q~~~y~r-~~ 179 (646)
T PLN02566 101 ATGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNISEVSCIPFTVGWYGETVTKRALKISCFYR-GG 179 (646)
T ss_pred CCCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCcceEEEeCcccccCCCCCCcEEEEEEEEEc-CC
Confidence 99999999998877799999999999999999999999999999998888999999999887755799999999999 88
Q ss_pred CCCcccCcCCCeEEEEecCCcEEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCceeec-c-CCeEEEeceEEEeec
Q 006085 176 TINMFLRPIEGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSS-T-RPGFKINGNTVKWAN 253 (662)
Q Consensus 176 ~~n~Ya~Pl~g~~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~~kP~~i~q-e-G~sf~v~g~~V~W~~ 253 (662)
++|+||||||||.++||++++||++|+|.+..|+|+.++. +.|+++||+.|+| | |+||+|+||+|+|||
T Consensus 180 ~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~~---------~~R~d~kPl~i~QPegG~sF~v~G~~V~W~~ 250 (646)
T PLN02566 180 SVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEGT---------DFRTKHKPFSFPCNVSDSGFTILGHRVKWAN 250 (646)
T ss_pred CcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCCC---------CCCcCCCCccccCCCCCCcEEEcCCEEEecC
Confidence 9999999999999999999999999999865566665431 3699999999999 9 599999999999999
Q ss_pred eEEEEEecCCcceEEEeeEEecCCCCeEeEEEEeeeceeEEeecCCCCCcccceeeeecCCCCcccCCcCCCCCCCCCCc
Q 006085 254 WVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWYHITYFDNGEFGFGLTAVPLERLNDCPAN 333 (662)
Q Consensus 254 W~f~vgf~~reGl~L~dv~~~d~~~~~~r~I~yrlsl~Em~vpYgdp~~~~~~k~~~D~geyG~G~~a~~L~~G~DCpg~ 333 (662)
|+||||||+||||+||||+|+|+++++.||||||+|||||+||||||+++|++|+|||+||||+|.+||+|++||||||+
T Consensus 251 W~f~vgf~~reGlvL~~v~~~D~~~~~~R~v~YrlSlsEm~VPYgDP~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~ 330 (646)
T PLN02566 251 WDFHVGFDARAGVTISTASVFDAKVKRFRRVLYRGHVSETFVPYMDPTSEWYFRTFMDIGEFGFGRSAVTLQPLIDCPAN 330 (646)
T ss_pred cEEEEecCCCcceEEEeEEEeccCCCcceeEEEEeeeeeeEEecCCCCccccccceeeccccCccccccccccCCCCCCC
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred cEEeeeEeecCCCceeEeCceEEEEEeeCCCceecccccCCCCc-eeecccceEEEEEEEEEecccceEEEEEEecCccE
Q 006085 334 AVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPGH-VREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSI 412 (662)
Q Consensus 334 ~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~-~~~~r~~~~LVvr~i~TVgNYdYi~~w~F~~DGtI 412 (662)
|+|||+++++++|+|++++|||||||+|+|||||||++++..+. ++.++.+++||||+|+|||||||||+|+|||||+|
T Consensus 331 i~YlD~~~~~~~G~p~~~~NaICihE~D~GgilwkHt~~~~~~~~~r~g~~~~~LVvr~I~TVgNYDYif~w~F~qdGtI 410 (646)
T PLN02566 331 AVYLDGYVAGADGQAQKMTNVICIFERYSGDVAFRHTEINVPGRVIRSGEPEISLVVRMVATLGNYDYILDWEFKKSGSI 410 (646)
T ss_pred cEEeeeEEecCCCCEEEecCEEEEEeecCCccceeeccCCCCccccccCcceEEEEEEEEEEeecccEEEEEEEecCceE
Confidence 99999999999999999999999999998799999999876554 56678888999999999999999999999999999
Q ss_pred EEEEEEeEEEeeecccccccCccccCCccceecCCccccccceEEEeeeecCCCCCCCceEEEEEEEecCCC--CCCCcc
Q 006085 413 KMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTN--VNTPRK 490 (662)
Q Consensus 413 e~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~--~~np~~ 490 (662)
|+||+|||||+|+++.+....+.+..+|||+|+|+++|++|||+|||||||||||.+|||+++|+++++... ++||++
T Consensus 411 e~eV~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~~~np~g 490 (646)
T PLN02566 411 KVGVDLTGVLEMKATSYTNNDQITKDVYGTLVAENTIAVNHDHFLTYYLDLDVDGNGNSFVKAKLQTARVTAVNASSPRK 490 (646)
T ss_pred EEEEEeEEEEEecccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCCCeEEEEeeEEccCCCCCCCCCCc
Confidence 999999999999887653322122368999999999999999999999999999999999999999976543 699999
Q ss_pred eeEEEEEEEeechhhhhhcCCCCCcEEEEeCCCCCCCCCCceeEEEccCCcccCCCCCCChhccccccceeeeEEeecCC
Q 006085 491 SYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKK 570 (662)
Q Consensus 491 ~~~~~~~~~l~tE~ea~~~~~~~~r~~~ivN~~~~N~~G~p~gYrl~p~~~~~~~~~~~s~~~~ra~fa~~~lwVT~y~~ 570 (662)
++|+++++++++|++|+++++...|.|+|+|++++|++|+|+||||+|+++++++++++|+..+||+||+|+||||+|+|
T Consensus 491 ~~~~~~~~~~~tE~~a~~~~~~~~~~~~i~N~~~~N~~G~pvgYkL~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d 570 (646)
T PLN02566 491 SYWTVVKETAKTEAEGRIRLGSEPAELLIVNPNKKTKLGNQVGYRLITGQPVTSLLSDDDYPQIRAAYTKYQVWVTAYNK 570 (646)
T ss_pred ceEEEEEEEecchhhhhhccCCCCceEEEECCCCcCCCCCeeeEEEccCCCccccCCCccchhhcchhhhCcEEEecCCC
Confidence 99999999999999999999994477999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCcCCCCCCCChhccccCCCceeeCCcEEEEEeceecCCCCCCCCcccceeeeeEEEecCCCCCCCCCC
Q 006085 571 SEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLK 646 (662)
Q Consensus 571 ~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld 646 (662)
+|+||||.|++|++++++|++|+++||+|+|||||+|||||+||+||+|||||||++++||+|||+||||+||+|.
T Consensus 571 ~E~~aag~y~~qs~g~~gl~~w~~~~~~I~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NPaL~ 646 (646)
T PLN02566 571 SERWAGGFYADRSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPVMPTLHGGFELRPANFFESNPLLR 646 (646)
T ss_pred cccCCCCcCccCCCCCCChhhhhcCCCcccCCceEEEEecccccCCChhhCCCcccccceEEEEcCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999983
No 3
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=2.2e-185 Score=1564.98 Aligned_cols=617 Identities=33% Similarity=0.614 Sum_probs=573.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CCCeEEEEEEccCCChHHhhhhhccCCC-CCCcEEEEEEEeCCeEEEEEEECCCC
Q 006085 21 RHPLDSLRPSEFTRVQTIVKTSYP-SNNLSFHYVGMDEPDKAVVYSWLSNSKT-KFPRRAIVIARHNHQTHEIIVDLSKR 98 (662)
Q Consensus 21 ~HPldpLt~~Ei~~a~~il~~~~~-~~~~~f~~i~L~EP~K~~vl~~l~~~~~-~p~R~A~vv~~~~~~~~e~vV~L~~~ 98 (662)
.|||||||++||++|++||+++.+ ..+++|++|+|+||+|++|++|+.++.+ .|+|+|+|+++.+++++|++|||+++
T Consensus 87 ~HPLdpLt~~Ei~~a~~iv~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~R~A~v~~~~~~~~~e~vVdL~~~ 166 (721)
T PRK14696 87 PHPLNALTADEIKQAVEIVKASADFKPNTRFTEISLKEPDKEAVWAFALENKPVDQPRKADVIMLDGKHVIEAVVDLQNN 166 (721)
T ss_pred CCCCCCCCHHHHHHHHHHHHhccccCCceEEEEEEecCCCcHHHHHHHhcCCCCCCCcEEEEEEEeCCCEEEEEEECCCC
Confidence 599999999999999999999875 5689999999999999999999986333 37899999999888899999999999
Q ss_pred eEEEEEeecCCCcCCCCHHHHHHHHHHHhcChHHHHHHHhcCC-CCCceEEccccccccCCC----CCeeEEEEEEEEee
Q 006085 99 SIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGL-NISDVVCSASTVGWYGEK----KSKRVLKFPCFYTD 173 (662)
Q Consensus 99 ~v~~~~~~~~~~~p~~~~~e~~~~e~~~~~~p~~~~~~~~~gi-~~~~v~~d~w~~G~~~~~----~~rRl~~~~~~~~~ 173 (662)
+|++|+.++ ++||+++.||+.+||++|++||+|+++|++||| +++.|+||||++||++.. ++||++||+||++
T Consensus 167 ~v~~~~~~~-~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~~~~~Rl~~~~~y~~- 244 (721)
T PRK14696 167 KVLSWQPIK-DAHGMVLLDDFASVQNIINNSEEFAAALKKRGITDVKKVITTPLTVGYFDGKDGLKQDARLLKVVSYLD- 244 (721)
T ss_pred EEEEEEeCC-CccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCCCCCEEEEeCccccccCCcCccccCceEEEEEEEEc-
Confidence 999999887 579999999999999999999999999999999 789999999999988763 3699999999998
Q ss_pred CCCCCcccCcCCCeEEEEecCCcEEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCceeec-cCCeEEEeceEEEee
Q 006085 174 QGTINMFLRPIEGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSS-TRPGFKINGNTVKWA 252 (662)
Q Consensus 174 ~~~~n~Ya~Pl~g~~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~~kP~~i~q-eG~sf~v~g~~V~W~ 252 (662)
++++|+||||||||+++||++++||++|+|.+..+.|... .+|+++. ++|+++||++|+| ||+||+|+|++|+||
T Consensus 245 ~~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~~-~~Y~~~~---~~r~~lKPl~i~QPeG~sF~v~G~~V~W~ 320 (721)
T PRK14696 245 VGDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMTA-RPYDGRD---RVAPAVKPLQIIEPEGKNYTITGDTIHWR 320 (721)
T ss_pred CCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-cCCCccc---cccCCCCCceeeCCCCCCEEEcCCeEEEC
Confidence 8899999999999999999999999999998876556544 5998765 3799999999999 999999999999999
Q ss_pred ceEEEEEecCCcceEEEeeEEecCCCCeEeEEEEeeeceeEEeecCCCCCcccceeeeecCCCCcccCCcCCCCCCCCCC
Q 006085 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWYHITYFDNGEFGFGLTAVPLERLNDCPA 332 (662)
Q Consensus 253 ~W~f~vgf~~reGl~L~dv~~~d~~~~~~r~I~yrlsl~Em~vpYgdp~~~~~~k~~~D~geyG~G~~a~~L~~G~DCpg 332 (662)
||+||+|||+||||+||||+|+| .|+.||||||+|||||+||||||+++|++|+|||+||||+|.+||+|++||||||
T Consensus 321 ~W~f~vgf~~ReGlvL~dv~y~d--~g~~R~v~YrlSlsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg 398 (721)
T PRK14696 321 NWDFHLSLDSRVGPMLSTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPS 398 (721)
T ss_pred CcEEEEecCCCcceEEEEEEEcC--CCcceeEEEEeeeeeEEEeCCCCCchhhhceeeeccccCCcccccccccCCCCCC
Confidence 99999999999999999999999 6888999999999999999999999999999999999999999999999999999
Q ss_pred ccEEeeeEeecCCCceeEeCceEEEEEeeCCCceecccccCCCCceeecccceEEEEEEEEEecccceEEEEEEecCccE
Q 006085 333 NAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSI 412 (662)
Q Consensus 333 ~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdYi~~w~F~~DGtI 412 (662)
+|+|||+++++++|+|++++|||||||+| .|++|||++++....++| +++||||+|+|||||||+|+|+|||||+|
T Consensus 399 ~i~Y~D~~~~~~~G~p~~~~NaICihE~D-~G~~wkHt~~~~~~~~~r---~r~LVvr~i~TVgNYDYif~w~F~qdGtI 474 (721)
T PRK14696 399 NAVLLDETIADYTGVPMEIPRAIAVFERY-AGPEYKHQEMGQPNVSTE---RRELVVRWISTVGNYDYIFDWVFHENGTI 474 (721)
T ss_pred CCEEeeeEEEcCCCCeEEecCEEEEeeec-CCCceeccccCCCcceEe---eeEEEEEEEEEecceeEEEEEEEecCceE
Confidence 99999999999999999999999999999 679999999985422444 45999999999999999999999999999
Q ss_pred EEEEEEeEEEeeeccccccc-Cc--cccCCccceecCCccccccceEEEeeeecCCCCCCCceEEEEEEEecCCCCCCCc
Q 006085 413 KMGVGLSGVLEVKPVEYTYV-DQ--IKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 489 (662)
Q Consensus 413 e~~v~aTGil~t~~~~~~~~-~~--~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~np~ 489 (662)
|++|+|||||+|+++..... +. .++.+|||+|+|+++|++|||+|||||||||||.+|||+++|++++|.+ ++||+
T Consensus 475 e~eV~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~~-~~nP~ 553 (721)
T PRK14696 475 GIDAGATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 553 (721)
T ss_pred EEEEEEEEEEEeccccccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCcceEEEEeeeEccCC-CCCcc
Confidence 99999999999987543111 11 1245899999999999999999999999999999999999999999876 48999
Q ss_pred ceeEEEEEEEeechhhhhhcCCC-CCcEEEEeCCCCCCCCCCceeEEEccCC--cc----cCCCCCCChhccccccceee
Q 006085 490 KSYWTVEKETAKTEFEARLNLDT-KPMEFALVNPSKKTKIGHPVGYRLLPGS--II----GPMLMEDDYPQIRAGFTNYN 562 (662)
Q Consensus 490 ~~~~~~~~~~l~tE~ea~~~~~~-~~r~~~ivN~~~~N~~G~p~gYrl~p~~--~~----~~~~~~~s~~~~ra~fa~~~ 562 (662)
+++|++++++++||++|++++++ ++|. |+|++++|++|+|+||||+|++ +. .+++.|+|+..+||+||+||
T Consensus 554 g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~G~pvgYkL~p~~~~~~~~~~~~~~~p~s~~~~Ra~fa~~~ 631 (721)
T PRK14696 554 TSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGANFAPDEWIYHRLSFMDKQ 631 (721)
T ss_pred ceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCCCCeeeEEEecCCCCccccccccccCCcchhhhhhhhhhCc
Confidence 99999999999999999999999 8886 9999999999999999999964 42 23688999999999999999
Q ss_pred eEEeecCCCCCCCCCcCcCCCCCCCChhccccCCCceeeCCcEEEEEeceecCCCCCCCCcccceeeeeEEEecCCCCCC
Q 006085 563 VWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYN 642 (662)
Q Consensus 563 lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~n 642 (662)
||||+|+++|+||+|+|++|+.+++||++|+++||+|+|||||+|||||+||+||+|||||||++++||+|||+||||+|
T Consensus 632 lwVT~y~d~E~~aaG~y~~qs~g~~gl~~w~~~~e~i~n~DiV~W~t~G~~HvPr~ED~PvMP~~~~~f~LkP~nFFd~n 711 (721)
T PRK14696 632 LWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDET 711 (721)
T ss_pred EEEeccCCcccCCCCCCccCCCCCCCHHHHhhCCCcccCCceEEEEecCcccCCchhhCCCccceeeeEEEEcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 006085 643 PVLKVIPPKH 652 (662)
Q Consensus 643 P~ldvp~~~~ 652 (662)
|+||||++.+
T Consensus 712 Paldvp~~~~ 721 (721)
T PRK14696 712 PTLGLLKKDQ 721 (721)
T ss_pred cccCCCCCCC
Confidence 9999999743
No 4
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.9e-183 Score=1454.33 Aligned_cols=616 Identities=34% Similarity=0.623 Sum_probs=580.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CCCeEEEEEEccCCChHHhhhhhccCCCCCCcEEEEEEEe--CCeEEEEEEECCC
Q 006085 21 RHPLDSLRPSEFTRVQTIVKTSYP-SNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRAIVIARH--NHQTHEIIVDLSK 97 (662)
Q Consensus 21 ~HPldpLt~~Ei~~a~~il~~~~~-~~~~~f~~i~L~EP~K~~vl~~l~~~~~~p~R~A~vv~~~--~~~~~e~vV~L~~ 97 (662)
+|||||||++||++|++|||+... .+.+.|..|+|.||+|++|++|...+. +++|.|+++++. +...+|++|||++
T Consensus 29 shPLdpLt~~Eik~aVEivr~e~~~~~~~~F~~VtL~eP~K~~v~~f~~~~~-~ieR~a~~~~~~~~~~~i~EavV~L~~ 107 (654)
T COG3733 29 SHPLDPLTADEIKQAVEIVRAEADFKKNFAFTEVTLLEPDKQEVLAFRLENK-PIERKALAVVYELDGKGIYEAVVDLDN 107 (654)
T ss_pred CCCCCccCHHHHHHHHHHHHhhcccCCceeeEEEEecCCchHHHHHHHhcCC-CcchhhhhheeeccCCceEEEEEEccc
Confidence 699999999999999999999874 479999999999999999999987432 478999999987 7889999999999
Q ss_pred CeEEEEEeecCCCcCCCCHHHHHHHHHHHhcChHHHHHHHhcCC-CCCceEEccccccccCC--CCCeeEEEEEEEEeeC
Q 006085 98 RSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGL-NISDVVCSASTVGWYGE--KKSKRVLKFPCFYTDQ 174 (662)
Q Consensus 98 ~~v~~~~~~~~~~~p~~~~~e~~~~e~~~~~~p~~~~~~~~~gi-~~~~v~~d~w~~G~~~~--~~~rRl~~~~~~~~~~ 174 (662)
.+|.+|+.+. +++|+|+.+||..+|.+++++|+|+|||+|||| |+++|+||||+.|+++. .++||+++.+||+|+.
T Consensus 108 nkv~~~q~i~-~a~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~~~V~vdpwt~G~~~~~~~~grr~~~~~m~yr~~ 186 (654)
T COG3733 108 NKVLSWQPIK-DAHPMITLDEFASVENIVRNDPRFIEACKKRGITDMDQVIVDPWTAGYFDEEGLKGRRRALKVMWYRDV 186 (654)
T ss_pred ceeeeeEecc-ccCCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchhhceEeccccccccCccccccceeEEEEEEEEec
Confidence 9999999877 579999999999999999999999999999999 89999999999999864 4689999999999988
Q ss_pred CCCCcccCcCCCeEEEEecCCcEEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCceeec-cCCeEEEeceEEEeec
Q 006085 175 GTINMFLRPIEGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSS-TRPGFKINGNTVKWAN 253 (662)
Q Consensus 175 ~~~n~Ya~Pl~g~~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~~kP~~i~q-eG~sf~v~g~~V~W~~ 253 (662)
.++|+|+|||+||.++||++++||++|+|++++|+|.. ..+|..+..+ +.+.++||++|.| ||+||+|+|++|+||+
T Consensus 187 e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~~-~~ny~~e~i~-~~~~~~KpiqI~QPeg~sf~i~G~~i~W~~ 264 (654)
T COG3733 187 EDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPMK-RANYGRERIG-KALGPVKPIQIIQPEGKSFTITGDEISWQN 264 (654)
T ss_pred CCCCcccccccceeeEEEcccCeEEEecCCCccccccc-ccCcCHHHhh-hhcCCCCCceeecCCCceEEEecCEEEEee
Confidence 89999999999999999999999999999999999984 4688766553 3456699999999 9999999999999999
Q ss_pred eEEEEEecCCcceEEEeeEEecCCCCeEeEEEEeeeceeEEeecCCCCCcccceeeeecCCCCcccCCcCCCCCCCCCC-
Q 006085 254 WVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWYHITYFDNGEFGFGLTAVPLERLNDCPA- 332 (662)
Q Consensus 254 W~f~vgf~~reGl~L~dv~~~d~~~~~~r~I~yrlsl~Em~vpYgdp~~~~~~k~~~D~geyG~G~~a~~L~~G~DCpg- 332 (662)
|+||+|||+||||+|+||+|+| +|..|+|+||+||+||+||||||+++|++|++||+||||+|..+++|++| ||.|
T Consensus 265 w~frig~n~ReGlvl~dVsY~D--~g~~Rpv~YraSl~eMvVPYGdPd~~h~~K~~fD~GeYglG~l~~plalG-dc~g~ 341 (654)
T COG3733 265 WRFRIGMNPREGLVLSDVSYND--NGNKRPVLYRASLVEMVVPYGDPDPGHYFKNAFDSGEYGLGTLTSPLALG-DCAGS 341 (654)
T ss_pred eeEEEeccccCCeEEEEEEEcC--CCccceEEEEeeecceeeecCCCCcchhhhhcccccccCccccccchhhc-ccccc
Confidence 9999999999999999999999 88899999999999999999999999999999999999999999999999 9999
Q ss_pred ccEEeeeEeecCCCceeEeCceEEEEEeeCCCceecccccCCCCc-eeecccceEEEEEEEEEecccceEEEEEEecCcc
Q 006085 333 NAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPGH-VREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGS 411 (662)
Q Consensus 333 ~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~-~~~~r~~~~LVvr~i~TVgNYdYi~~w~F~~DGt 411 (662)
.|+|||+++++.+|+|+++||||||||+| .|+||||+|+|+++. ++|.| .||||+|+|||||||+|+|+|||||+
T Consensus 342 ~i~~lDa~~a~~tG~p~~i~~AIcIhEed-~GvlwKH~d~rs~~~~trr~r---~LVVs~i~Tv~NYdYg~~WifhqDGt 417 (654)
T COG3733 342 NIVLLDATFANYTGEPMTIPNAICIHEED-AGVLWKHQDFRSPNVETRRAR---GLVVSWIATVANYDYGFYWIFHQDGT 417 (654)
T ss_pred eeEEEeeeeeccCCceEEecceeEEEecc-ccceeeehhhcCCccceeecc---ceEEEEEEeecccceeEEEEEEcCce
Confidence 89999999999999999999999999999 889999999999876 55555 89999999999999999999999999
Q ss_pred EEEEEEEeEEEeeecccccccCccccCCccceecCCccccccceEEEeeeecCCCCCCCceEEEEEEEecCCCCCCCcce
Q 006085 412 IKMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPRKS 491 (662)
Q Consensus 412 Ie~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~np~~~ 491 (662)
||++++||||++|++.... +. ...||++|.|++.|++||||||+||||||||.+|||+++|++..|.+ ..||+||
T Consensus 418 Ie~e~klTGIin~~a~~e~---~p-~~~yGt~v~~~v~g~~HQH~Fn~RLdm~VDG~~Nsv~e~nv~~~P~~-~~np~gN 492 (654)
T COG3733 418 IEFEAKLTGIINTKAIAEG---QP-DPTYGTLVDPNVVGHTHQHFFNARLDMDVDGERNSVVEMNVVGAPIT-KGNPYGN 492 (654)
T ss_pred EEEeecceeEEEeehhcCC---CC-CCCccceeccccccccceeEEEeeecccccCcccceEEEEcccCCCC-CCCCccc
Confidence 9999999999999865322 21 23499999999999999999999999999999999999998877764 3899999
Q ss_pred eEEEEEEEeechhhhhhcCCC-CCcEEEEeCCCCCCCCCCceeEEEccCCcccCCCCCCChhccccccceeeeEEeecCC
Q 006085 492 YWTVEKETAKTEFEARLNLDT-KPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKK 570 (662)
Q Consensus 492 ~~~~~~~~l~tE~ea~~~~~~-~~r~~~ivN~~~~N~~G~p~gYrl~p~~~~~~~~~~~s~~~~ra~fa~~~lwVT~y~~ 570 (662)
+|+++++++++|++|.+++|+ +.|+|+|+|++|||.+|+|+||||+|+.+..+++.++|.+.+|++||+||||||+|++
T Consensus 493 af~~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~~~~~~~~~~~gs~v~~R~~Fa~~hlwVT~y~p 572 (654)
T COG3733 493 AFQVEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIPGHNPTPPVAEGSQVRHRAGFATKHLWVTPYHP 572 (654)
T ss_pred eEEEecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEecCCCCCCcCCCCcchhhhhhhccceEEEeccCc
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCcCCCCCCCChhccccCCCceeeCCcEEEEEeceecCCCCCCCCcccceeeeeEEEecCCCCCCCCCCCCCC
Q 006085 571 SEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIPP 650 (662)
Q Consensus 571 ~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvp~~ 650 (662)
.|+||+|+|+||+.+++||++|+++||||+|||||+|||||+||+||+|||||||+++.||.|+|+||||+||+|++|++
T Consensus 573 ~ErYp~GdYpnq~~~~~GLp~yi~~d~sl~neDlVvW~T~GitHv~rpED~PvMP~e~~gf~L~P~gFFd~nPai~lp~~ 652 (654)
T COG3733 573 GERYPAGDYPNQSAGGKGLPEYIKDDRSLDNEDLVVWHTFGITHVPRPEDWPVMPVEWAGFLLKPRGFFDRNPAIDLPRK 652 (654)
T ss_pred ccccCCCCCCCCCCCCCChhhhhhccccccCcceEEEEecCceeccCcccCCccccchhceEeccccccccCcccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 006085 651 KH 652 (662)
Q Consensus 651 ~~ 652 (662)
.+
T Consensus 653 ~n 654 (654)
T COG3733 653 DN 654 (654)
T ss_pred CC
Confidence 53
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.5e-160 Score=1315.14 Aligned_cols=635 Identities=55% Similarity=0.928 Sum_probs=587.0
Q ss_pred cccCCC-CCCCCCCCHHHHHHHHHHHHhcCCC---CCeEEEEEEccCCChHHhhhhhccCCC-CCCcEEEEEEEeCCeEE
Q 006085 15 PISSSK-RHPLDSLRPSEFTRVQTIVKTSYPS---NNLSFHYVGMDEPDKAVVYSWLSNSKT-KFPRRAIVIARHNHQTH 89 (662)
Q Consensus 15 ~~~~~~-~HPldpLt~~Ei~~a~~il~~~~~~---~~~~f~~i~L~EP~K~~vl~~l~~~~~-~p~R~A~vv~~~~~~~~ 89 (662)
.++... .|||||||+.||..++.||+...++ ....|..|.|.||.|+-++.|+.+..+ +|+|+|++|.+.+++++
T Consensus 20 ~~s~~~p~hPlDPLte~EL~kvr~iL~~~d~~s~~~~~~~~av~l~eP~K~~vlsw~~gP~~~pPpRRA~vVaR~gg~t~ 99 (670)
T KOG1186|consen 20 SASQERPSHPLDPLTELELPKVAAILAHLDPGSPHPAFEAVAVVLFEPQKQPVLSWLSGPLPHPPPRRALVVERHGGPTP 99 (670)
T ss_pred cccCCCCCCCcCccchhhhhHHHHHHhhcccCCCCCceEEEEEEecCCCcCccceeccCCCCCCCcceeEEEeecCCCce
Confidence 355555 7999999999999999999988753 677899999999999999999994434 68899999999999999
Q ss_pred EEEEECCCCeEEEEEee-cCCCcCCCCHHHHHHHHHHHhcChHHHHHHHhcCCCCCceEEccccccccCC-CCC-eeEEE
Q 006085 90 EIIVDLSKRSIVSDKVY-TGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGLNISDVVCSASTVGWYGE-KKS-KRVLK 166 (662)
Q Consensus 90 e~vV~L~~~~v~~~~~~-~~~~~p~~~~~e~~~~e~~~~~~p~~~~~~~~~gi~~~~v~~d~w~~G~~~~-~~~-rRl~~ 166 (662)
|++|||+++++++.... .+.+.|++|.+|+.++++++++.+.|..++.+||+.++.|.|.+|+.|||+. ..+ ||+++
T Consensus 100 e~~vdlst~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~~~f~~si~~rG~~~s~vic~~~t~Gwyge~~~g~~Rlik 179 (670)
T KOG1186|consen 100 EARVDLSTAEVVSIKHHLVGNGYPILTADELFNTSGRVLAFKPFCPRGLRRGDRMSWVVCYPNTSGWYGEHPVGLERLIK 179 (670)
T ss_pred EEEEecchheeeecccccccCccccccHHHHHhhhcCCccccccchhhhccCCcceeEEEecceeeecccCCcchhhhhh
Confidence 99999999999997766 6778999999999999999999999999999999999999999999998887 333 89999
Q ss_pred EEEEEeeCCCCCcccCcCCCeEEEEecCCcEEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCceeec-cCCeEEEe
Q 006085 167 FPCFYTDQGTINMFLRPIEGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSS-TRPGFKIN 245 (662)
Q Consensus 167 ~~~~~~~~~~~n~Ya~Pl~g~~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~~kP~~i~q-eG~sf~v~ 245 (662)
..||++ ....|+|.+||+|++++||++++||++++|+..+|+|...+.+|+.+.. . ..+||+..+ |||||+|+
T Consensus 180 ~~~f~~-~~~~n~y~rpieg~yi~vdld~~kVi~~~d~~~iP~P~~~Gt~~Rs~~~----p-~~~pLq~isPeGP~FrVe 253 (670)
T KOG1186|consen 180 HMAFYR-AGWVNQQVRPIEGFYIIVDLDEMKVIAGRDRVRVPLPKAKGTELRSSVL----P-GFKPLQPISPEGPGFRVE 253 (670)
T ss_pred hccccc-CCCeeEEEeecCceEEeeccccceEEEEecccccccCCCCCCccccccC----C-CCccccccCCCCCceEEE
Confidence 999999 6688999999999999999999999999999999999988888865432 1 334488887 99999999
Q ss_pred ceEEEeeceEEEEEecCCcceEEEeeEEecCCCCeEeEEEEeeeceeEEeecCCCCCcccceeeeecCCCCcccCCcCCC
Q 006085 246 GNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGWYHITYFDNGEFGFGLTAVPLE 325 (662)
Q Consensus 246 g~~V~W~~W~f~vgf~~reGl~L~dv~~~d~~~~~~r~I~yrlsl~Em~vpYgdp~~~~~~k~~~D~geyG~G~~a~~L~ 325 (662)
|+.|+|+||+|++||+.|+||+|++|+|.| .+..|||+||+|+|||+||||||+++||+|+|||+||||+|..|++|+
T Consensus 254 G~~V~w~nW~Fh~~~~~r~Gl~is~v~~~d--~~~~r~v~Y~~s~~E~~vpYgdp~~~~~~~~y~D~Ge~G~G~~a~~L~ 331 (670)
T KOG1186|consen 254 GHLVRWANWEFHIGFDVRAGLVISDASFFD--EDVYRRVLYKGSLSEMFVPYGDPSPDWYFKTYLDCGEFGLGQYAVSLA 331 (670)
T ss_pred EEEEEeeccEEEEccCCccceEEEEEEEcC--CCceeeEEEEeeeeeeEEecCCCCchhheeeeecccccCCCccccccc
Confidence 999999999999999999999999999999 556899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccEEeeeEeecCCCceeEeCceEEEEEeeCCCceecccccCCCCc-eeecccceEEEEEEEEEecccceEEEE
Q 006085 326 RLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPGH-VREVRPEVSLVVRMVATVGNYDYIIDW 404 (662)
Q Consensus 326 ~G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~-~~~~r~~~~LVvr~i~TVgNYdYi~~w 404 (662)
+|||||++|+|||++++..+|+|.+++||+||||+++|.|||||+++...+. ++.+|++++|||||++|||||||||||
T Consensus 332 ~g~DCp~~a~y~D~~f~~~~g~p~~~~n~~CifE~~~G~~l~rH~~~~~~~~~~~~~~~~~~LVvr~~~tv~NYdYi~d~ 411 (670)
T KOG1186|consen 332 PGTDCPGNATYMDGHFAGQDGTPEKIPNAMCIFEKYAGDILWRHTEAEIPGLHITEVRPDVSLVVRMVTTVGNYDYIVDY 411 (670)
T ss_pred cCCCCCCcceEEEEEEecCCCCcEEecCcEEEEEccCCCceeeccccccCCCcccccccccEEEEEEeeeecccceEEEE
Confidence 9999999999999999999999999999999999998889999999766664 788999999999999999999999999
Q ss_pred EEecCccEEEEEEEeEEEeeecccccccCccccCCccceecCCccccccceEEEeeeecCCCCCCCceEEEEEEEecCCC
Q 006085 405 EFKPSGSIKMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTN 484 (662)
Q Consensus 405 ~F~~DGtIe~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~ 484 (662)
+||+||.||++|+|||||+++++.+... ...|||+|+++++|++|||+|+|||||||||++|++...+.+..+...
T Consensus 412 ~F~~~G~ie~~v~lTG~l~~~~~~~~~~----~~~~Gt~v~~~~ig~~H~H~~~~rldldvdG~~n~~~v~~~~~~~~~~ 487 (670)
T KOG1186|consen 412 EFKPSGVIEAGVGLTGVLEVKPVEYGET----SDIYGTIVAENTIGVNHDHFVTFRLDLDVDGTKNNSFVRDELVTPRTP 487 (670)
T ss_pred EEecCCeEEEEEeeEEEEEeeccccccc----cccccceecccccccccceEEEEEEcccccCCccceeeeeeEeecccC
Confidence 9999999999999999999988765432 257999999999999999999999999999995444444444445444
Q ss_pred C-CCCcceeEEEEEEEeechhhhhhcCCC-CCcEEEEeCCCCCCCCCCceeEEEccCCcccCCCCCCChhccccccceee
Q 006085 485 V-NTPRKSYWTVEKETAKTEFEARLNLDT-KPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPMLMEDDYPQIRAGFTNYN 562 (662)
Q Consensus 485 ~-~np~~~~~~~~~~~l~tE~ea~~~~~~-~~r~~~ivN~~~~N~~G~p~gYrl~p~~~~~~~~~~~s~~~~ra~fa~~~ 562 (662)
+ .++++++|++++++++||++|+.+++. +++.|.|+|++++|++|+|+||||+|++++.+++++++..++||+|++|+
T Consensus 488 ~~~~~~~~~~~~~~~~~kte~~~~~~~~~~~~~~~~~~n~n~~~~~G~~~gYrl~~~s~a~~ll~~~~~~~~r~af~~y~ 567 (670)
T KOG1186|consen 488 PSVTPRKSYWTTKRKTAKTEAEARAKLNGLKAEELLVVNPNKKTKHGNPVGYRLVPGSTAGPLLPQDDYPQIRAAFTNYN 567 (670)
T ss_pred CCCCcccchhhhhhhhhhhHHHHhhhhccCCCceEEEECCCCccccCCccceEEeeCCcccccCCCCchHHhhhhhhcce
Confidence 4 678899999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCCCCCCcCcCCCCCCCChhccccCCCceeeCCcEEEEEeceecCCCCCCCCcccceeeeeEEEecCCCCCC
Q 006085 563 VWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYN 642 (662)
Q Consensus 563 lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~n 642 (662)
||||+|+++|.||||.|.+|++++++|+.|.+.|++|+|+|||+|||+||||||++||||+|||+..||.|||+|||++|
T Consensus 568 l~VT~y~~~E~~~~g~y~~~~~~~~tl~~w~~~nr~ien~DiV~W~t~Gf~HiP~~ED~P~mpt~~~gF~LrP~NFF~~n 647 (670)
T KOG1186|consen 568 LWVTPYNESEVWASGLYADQSQGDDTLAVWSQRNRSIENKDIVMWYTVGFHHVPCQEDFPTMPTLGGGFELRPTNFFERN 647 (670)
T ss_pred eEEeccCccccCcccccccCCCCCCcceehhhcccccccCceEEEEEcceeecCchhcCCCCcccCCceeeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 006085 643 PVLKVIPPKHVQRPNYTGK 661 (662)
Q Consensus 643 P~ldvp~~~~~~~~~~~~~ 661 (662)
|+|++||+......+|+++
T Consensus 648 P~l~~~p~~~~~~~~c~p~ 666 (670)
T KOG1186|consen 648 PSLKSPPSKYVTAPKCTPK 666 (670)
T ss_pred ccccCCCcceeecccccCC
Confidence 9999999999999999875
No 6
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=1.2e-141 Score=1155.48 Aligned_cols=407 Identities=41% Similarity=0.743 Sum_probs=365.1
Q ss_pred Cceeec-cCCeEEEeceEEEeeceEEEEEecCCcceEEEeeEEecCCCCeEeE--EEEeeeceeEEeecCCCCCccccee
Q 006085 232 SVATSS-TRPGFKINGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRR--VLYRGFISELFIPYQDPSEGWYHIT 308 (662)
Q Consensus 232 P~~i~q-eG~sf~v~g~~V~W~~W~f~vgf~~reGl~L~dv~~~d~~~~~~r~--I~yrlsl~Em~vpYgdp~~~~~~k~ 308 (662)
||+|+| ||+||+|+|++|+||+|+|||+|++||||+||||+|+| ++ ||||+|||||+||||||+++|++|+
T Consensus 1 Pl~i~qP~G~sf~v~g~~v~w~~W~f~~~~~~r~Gl~l~dV~y~~------~~~~I~yr~sl~Em~vpY~d~~~~~~~~~ 74 (413)
T PF01179_consen 1 PLHIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKG------ERRPILYRLSLQEMVVPYGDPDPPHHRKN 74 (413)
T ss_dssp -EEEE-TTS-SEEEETTEEEETTEEEEEEEETTTEEEEEEEEETT------EEEEEEEEEEEEEEEEEEE-SSTTHHH-E
T ss_pred CcceeCCCCCCEEEeCCEEEeCCcEEEEECCCCccceEEEEEEeC------CCccEEEEEeeeeeeeecCCCCchhhccc
Confidence 899999 99999999999999999999999999999999999999 55 9999999999999999999999999
Q ss_pred eeecCCCCcccCCcCCCCCCCCCCccEEeeeEeecCCCceeEeCceEEEEEeeCCCceecccccCCCCceeecccceEEE
Q 006085 309 YFDNGEFGFGLTAVPLERLNDCPANAVFMDGYFASQDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPGHVREVRPEVSLV 388 (662)
Q Consensus 309 ~~D~geyG~G~~a~~L~~G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~r~~~~LV 388 (662)
|||+||||+|.++++|++||||||+|+|||+++++++|+|++++|||||||+|. ||||||++++++.. .++++++||
T Consensus 75 ~~D~geyG~G~~~~~L~~G~DCpg~~~yld~~~~~~~g~p~~~~naiCi~E~d~-G~l~kH~~~~~~~~--~~~r~~~LV 151 (413)
T PF01179_consen 75 AFDSGEYGLGSMANSLVLGCDCPGTITYLDAVLADDSGEPVTIPNAICIFEEDA-GPLWKHTDYRTGRF--EVRRSRRLV 151 (413)
T ss_dssp EEHHHHTTTTTTBE-STTTTSS-TTSEEEEEEEEETTSSEEEEEEEEEEEEEEE-EEEEEEEETTSSEE--EEEEEEEEE
T ss_pred cccccccccCccccccccCCCCCceeEEcceEEECCCCCceeccceEEEEEecC-Cchhhccccccccc--ceeeccEEE
Confidence 999999999999999999999999999999999999999999999999999995 59999999987554 445566999
Q ss_pred EEEEEEecccceEEEEEEecCccEEEEEEEeEEEeeecccccccCccccCCccceecCCccccccceEEEeeeecCCCCC
Q 006085 389 VRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGY 468 (662)
Q Consensus 389 vr~i~TVgNYdYi~~w~F~~DGtIe~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~ 468 (662)
||+|+|||||||||+|+|||||+||++|+|||||++... ..+ +..+||++|+++++|++|||+|||||||||||+
T Consensus 152 vr~i~TV~NYDYi~~~~F~~dG~Ie~~v~aTGil~~~~~---~~~--~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~ 226 (413)
T PF01179_consen 152 VRTISTVGNYDYIFDWIFYQDGSIEVEVRATGILSTSPY---APG--EQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDGT 226 (413)
T ss_dssp EEEEEEETTEEEEEEEEEETTS-EEEEEEEEE---EEET---TTT--CGGGSEEEEETTEEEEEEEEEEEEEEEE-TTSS
T ss_pred EEEEEeccccceEEEEEEecCceEEEEEEeeeEEEEEec---CCC--CccCCcceEcCCccccceeEEEEEEEccccCCC
Confidence 999999999999999999999999999999999998653 122 246799999999999999999999999999999
Q ss_pred CCceEEEEEEEecC--CCCCCCcceeEEEEEEEeechhhhhhcCCC-CCcEEEEeCCCCCCCCCCceeEEEccCCcccCC
Q 006085 469 ANSFEKTKLVTRRN--TNVNTPRKSYWTVEKETAKTEFEARLNLDT-KPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPM 545 (662)
Q Consensus 469 ~Nsv~~~d~~~~~~--~~~~np~~~~~~~~~~~l~tE~ea~~~~~~-~~r~~~ivN~~~~N~~G~p~gYrl~p~~~~~~~ 545 (662)
+|||+++|+++++. +...||++++|+++++++++|++|++++++ ++|+|+|+|++++|++|+|+||||+|+++++++
T Consensus 227 ~Nsv~~~d~~~~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~l 306 (413)
T PF01179_consen 227 NNSVVEVDIVPEPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHLL 306 (413)
T ss_dssp EEEEEEEEEEEEEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-S
T ss_pred CCeEEEEEeEEcccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCccccc
Confidence 99999999999987 334799999999999999999999999999 999999999999999999999999999999999
Q ss_pred CCCCChhccccccceeeeEEeecCCCCCCCCCcCcCCCCCCCChhccccCCCceeeCCcEEEEEeceecCCCCCCCCccc
Q 006085 546 LMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFPVMP 625 (662)
Q Consensus 546 ~~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp 625 (662)
++++|+..+||+||+|+||||+|+|+|+||+|+|++|++++++|++|+++||+|+|||||+|+|+|+||+||+|||||||
T Consensus 307 ~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp 386 (413)
T PF01179_consen 307 APPDSWVARRASFARHHLWVTKYKDSERYASGEYNNQSPGDVGLPDWIADNESIENEDIVVWVTFGFHHVPRPEDWPVMP 386 (413)
T ss_dssp SSTTSCHHHHTGGGGSSEEEEE--TTGS-ST-TTTTT-SSSSSHHHHHTTSSB-SSEEEEEEEEEEEEE---GGGSSSEE
T ss_pred CCCcchhhhccccccCceEEeecCCCccCCCCCCccCCCCCCCHHHHhccCCcccCCCeEEEEeccccccCCcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeEEEecCCCCCCCCCCCCCCCC
Q 006085 626 TVSCGFELRPTNFFEYNPVLKVIPPKH 652 (662)
Q Consensus 626 ~~~~~f~L~P~nFFd~nP~ldvp~~~~ 652 (662)
++++||+|||+||||+||+||+|++.|
T Consensus 387 ~~~~gf~L~P~nFF~~nPald~p~~~~ 413 (413)
T PF01179_consen 387 VEWLGFMLKPFNFFDRNPALDVPPSVQ 413 (413)
T ss_dssp EEEEEEEEEEESSSSSSTTTTCTTC--
T ss_pred CcEEEEEEEcCCCCCCCccccCCCCCC
Confidence 999999999999999999999999875
No 7
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.89 E-value=2.8e-23 Score=186.37 Aligned_cols=98 Identities=36% Similarity=0.647 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHHhcChHHHHHHHhcCC-CCCceEEccccccccCCCC-CeeEEEEEEEEeeCCCCCcccCcCCCeEE
Q 006085 112 PLLTLEEQHAGAALVLAYEPFKASVKKRGL-NISDVVCSASTVGWYGEKK-SKRVLKFPCFYTDQGTINMFLRPIEGITI 189 (662)
Q Consensus 112 p~~~~~e~~~~e~~~~~~p~~~~~~~~~gi-~~~~v~~d~w~~G~~~~~~-~rRl~~~~~~~~~~~~~n~Ya~Pl~g~~~ 189 (662)
|+++.+|+.+++++++++|+|+++|++||| |++.|+|+||++|+++.++ ++|++|++||+|.. .+|+|||||+||++
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~-~~n~YahPi~gl~~ 79 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDS-GNNFYAHPIEGLEP 79 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SS-TS-GGGSEEECEEE
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcC-CCcccccccCceEE
Confidence 789999999999999999999999999999 6899999999999988755 89999999999954 44999999999999
Q ss_pred EEecCCcEEEEEeCCc-cccCC
Q 006085 190 VVDIEEMKVTEYNDRE-VAPIP 210 (662)
Q Consensus 190 ~vD~~~~~vv~i~d~~-~~~~p 210 (662)
+||++++||++|+|++ .+|+|
T Consensus 80 ~vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 80 LVDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp EEETTTTEEEEEEEEEEEETT-
T ss_pred EEECCCCEEEEEEeCCceeeCC
Confidence 9999999999999988 46654
No 8
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.77 E-value=8.7e-20 Score=159.31 Aligned_cols=83 Identities=31% Similarity=0.460 Sum_probs=71.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC--CCCCeEEEEEEccCCChHHhhhhhccCCCCCCcEEEEEEEeCCeEEEEEEECCCCe
Q 006085 22 HPLDSLRPSEFTRVQTIVKTSY--PSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRAIVIARHNHQTHEIIVDLSKRS 99 (662)
Q Consensus 22 HPldpLt~~Ei~~a~~il~~~~--~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~p~R~A~vv~~~~~~~~e~vV~L~~~~ 99 (662)
|||||||++||++|+++|+++. .+.+++|.+|+|+||+|++|++| +.+++.|+|+|+|+++++++.+|++|||+.++
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~~~~~~~F~~I~L~EP~K~~vl~~-~~~~~~p~R~A~vv~~~~~~~~e~vVdl~~~~ 79 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPLAGEKNRFRSIELQEPPKAEVLAF-ERGGPPPPRRARVVVYDGGQSYEAVVDLTSGK 79 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGTTTTSEEEEEEEEE---HHHHHHH-HCCTTTS-EEEEEEEEETSSSSEEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCHHHHhcc-ccCCcCCCeEEEEEEEECCeeeeEEEECcCCc
Confidence 9999999999999999999988 46899999999999999999999 44444589999999999877799999999999
Q ss_pred EEEEEe
Q 006085 100 IVSDKV 105 (662)
Q Consensus 100 v~~~~~ 105 (662)
|++|+.
T Consensus 80 V~~~~~ 85 (86)
T PF02727_consen 80 VVSWKE 85 (86)
T ss_dssp CSCEEE
T ss_pred cccCcc
Confidence 998874
No 9
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=45.09 E-value=12 Score=30.36 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=19.6
Q ss_pred cccCCC-CCCCCCCCHHHHHHHHHHHHh
Q 006085 15 PISSSK-RHPLDSLRPSEFTRVQTIVKT 41 (662)
Q Consensus 15 ~~~~~~-~HPldpLt~~Ei~~a~~il~~ 41 (662)
||--.. .=|..+||+.|+++|.+.|++
T Consensus 25 pHgdH~HyI~k~dLs~~E~~aA~~~~~~ 52 (53)
T PF04270_consen 25 PHGDHFHYIPKSDLSASELKAAQAYLAG 52 (53)
T ss_dssp EETTEEEEEEGGGS-HHHHHHHHHHHH-
T ss_pred eCCCcccCCchhhCCHHHHHHHHHHHhc
Confidence 554333 348899999999999999875
No 10
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=41.93 E-value=8.4 Score=34.60 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHhcCCC-CCeEEEEEEccCCChHHhhhhhccCC--CC-CCcEEEEEEEeC--C-e------E-EEE
Q 006085 26 SLRPSEFTRVQTIVKTSYPS-NNLSFHYVGMDEPDKAVVYSWLSNSK--TK-FPRRAIVIARHN--H-Q------T-HEI 91 (662)
Q Consensus 26 pLt~~Ei~~a~~il~~~~~~-~~~~f~~i~L~EP~K~~vl~~l~~~~--~~-p~R~A~vv~~~~--~-~------~-~e~ 91 (662)
|+|.+|+.++.+++++.... ..+. ...|.++.+-.+..|-.|.- .. -.|.+.+.+|.. + . . .++
T Consensus 2 pi~~~E~~~~~~~~~~~p~~~~al~--~rgi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~~~n~YahPi~gl~~ 79 (101)
T PF02728_consen 2 PITLEEFAEAEEIVKADPEFQAALK--KRGITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDSGNNFYAHPIEGLEP 79 (101)
T ss_dssp ---HHHHHHHHHHHHTGHHHHHHHH--HTTCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SSTS-GGGSEEECEEE
T ss_pred CcCHHHHHHHHHHHHHCHHHHHHHH--HhCCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcCCCcccccccCceEE
Confidence 68999999999999865321 0000 00122333333344433321 12 458888888762 2 0 1 488
Q ss_pred EEECCCCeEEEEEe
Q 006085 92 IVDLSKRSIVSDKV 105 (662)
Q Consensus 92 vV~L~~~~v~~~~~ 105 (662)
+||+.+.+|+++..
T Consensus 80 ~vD~~~~~vi~i~d 93 (101)
T PF02728_consen 80 LVDLDSMEVIRIED 93 (101)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEECCCCEEEEEEe
Confidence 99999999999864
Done!